Symbol	RAPdb	MSU	Keyword	Title	Evidence
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	nitrogen	Rice Ferredoxin-Dependent Glutamate Synthase Regulates Nitrogen-Carbon Metabolomes and Is Genetically Differentiated between japonica and indica Subspecies	Metabolomics analysis revealed the accumulation of excessive amount of amino acids with high N/C ratio (Gln and Asn) and several intermediates in the tricarboxylic acid cycle in abc1-1, suggesting that ABC1 plays a critical role in regulating nitrogen assimilation and carbon-nitrogen balance
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	nitrogen	The ferredoxin-dependent glutamate synthase (OsFd-GOGAT) participates in leaf senescence and the nitrogen remobilization in rice.	), the contribution of OsFd-GOGAT to rice foliar nitrogen metabolism remains little up-to-date
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	nitrogen	The ferredoxin-dependent glutamate synthase (OsFd-GOGAT) participates in leaf senescence and the nitrogen remobilization in rice.	The results in this study suggested that OsFd-GOGAT might participate in nitrogen remobilization during leaf senescence, which provides a potential way to improve nitrogen use efficiency in rice
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	leaf	The ferredoxin-dependent glutamate synthase (OsFd-GOGAT) participates in leaf senescence and the nitrogen remobilization in rice.	The results in this study suggested that OsFd-GOGAT might participate in nitrogen remobilization during leaf senescence, which provides a potential way to improve nitrogen use efficiency in rice
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	leaf senescence	The ferredoxin-dependent glutamate synthase (OsFd-GOGAT) participates in leaf senescence and the nitrogen remobilization in rice.	The results in this study suggested that OsFd-GOGAT might participate in nitrogen remobilization during leaf senescence, which provides a potential way to improve nitrogen use efficiency in rice
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	leaf	Isolation and characterization of a spotted leaf 32 mutant with early leaf senescence and enhanced defense response in rice.	The spl32 plants displayed early leaf senescence, identified by disintegration of chloroplasts as cellular evidence, dramatically decreased contents of chlorophyll, up-regulation of superoxide dismutase enzyme activity and malondialdehyde, as physiological characteristic, and both up-regulation of senescence-induced STAY GREEN gene and senescence-associated transcription factors, and down-regulation of photosynthesis-associated genes, as molecular indicators
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	leaf senescence	Isolation and characterization of a spotted leaf 32 mutant with early leaf senescence and enhanced defense response in rice.	The spl32 plants displayed early leaf senescence, identified by disintegration of chloroplasts as cellular evidence, dramatically decreased contents of chlorophyll, up-regulation of superoxide dismutase enzyme activity and malondialdehyde, as physiological characteristic, and both up-regulation of senescence-induced STAY GREEN gene and senescence-associated transcription factors, and down-regulation of photosynthesis-associated genes, as molecular indicators
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	transcription factor	Isolation and characterization of a spotted leaf 32 mutant with early leaf senescence and enhanced defense response in rice.	The spl32 plants displayed early leaf senescence, identified by disintegration of chloroplasts as cellular evidence, dramatically decreased contents of chlorophyll, up-regulation of superoxide dismutase enzyme activity and malondialdehyde, as physiological characteristic, and both up-regulation of senescence-induced STAY GREEN gene and senescence-associated transcription factors, and down-regulation of photosynthesis-associated genes, as molecular indicators
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	early leaf senescence	Isolation and characterization of a spotted leaf 32 mutant with early leaf senescence and enhanced defense response in rice.	The spl32 plants displayed early leaf senescence, identified by disintegration of chloroplasts as cellular evidence, dramatically decreased contents of chlorophyll, up-regulation of superoxide dismutase enzyme activity and malondialdehyde, as physiological characteristic, and both up-regulation of senescence-induced STAY GREEN gene and senescence-associated transcription factors, and down-regulation of photosynthesis-associated genes, as molecular indicators
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	nitrogen	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	qRT-PCR analysis indicated that several genes related to nitrogen metabolism were differentially expressed in es7
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	nitrogen	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	In addition, when seedlings are grown under increasing nitrogen concentrations (NH4NO3) for 15 days, the contents of chlorophyll a, chlorophyll b and total chlorophyll were significantly lower in es7
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	nitrogen	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	Our results demonstrated that ES7 is involved in nitrogen metabolism, effects chlorophyll synthesis, and may also associated with photorespiration, impacting leaf senescence in rice
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	leaf	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	Our results demonstrated that ES7 is involved in nitrogen metabolism, effects chlorophyll synthesis, and may also associated with photorespiration, impacting leaf senescence in rice
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	leaf senescence	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	Our results demonstrated that ES7 is involved in nitrogen metabolism, effects chlorophyll synthesis, and may also associated with photorespiration, impacting leaf senescence in rice
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	seedlings	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	In addition, when seedlings are grown under increasing nitrogen concentrations (NH4NO3) for 15 days, the contents of chlorophyll a, chlorophyll b and total chlorophyll were significantly lower in es7
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	chloroplast	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	ES7 was expressed constitutively, and the ES7 protein was localized in chloroplast
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	senescence	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	When es7 plants are grown under photorespiration-suppressed conditions (high CO2), the senescence phenotype and chlorophyll content are rescued
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	senescence	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	Our results demonstrated that ES7 is involved in nitrogen metabolism, effects chlorophyll synthesis, and may also associated with photorespiration, impacting leaf senescence in rice
ABC1|OsFd-GOGAT|SPL32|ES7	Os07g0658400	LOC_Os07g46460	tillering	ES7, encoding a ferredoxin-dependent glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice	The leaves of the es7 mutant begin to senesce at the tillering stage about 60 day after sowing, and become increasingly senescent as the plants develop at the heading stage
AChE	Os07g0586200	LOC_Os07g39750	seedlings	Overexpression of acetylcholinesterase gene in rice results in enhancement of shoot gravitropism.	This result clearly suggests that the function of the rice AChE relate to positive regulation of gravitropic response in rice seedlings
AChE	Os07g0586200	LOC_Os07g39750	acetylcholinesterase	Overexpression of acetylcholinesterase gene in rice results in enhancement of shoot gravitropism	Overexpression of acetylcholinesterase gene in rice results in enhancement of shoot gravitropism
AChE	Os07g0586200	LOC_Os07g39750	shoot gravitropism	Overexpression of acetylcholinesterase gene in rice results in enhancement of shoot gravitropism	Overexpression of acetylcholinesterase gene in rice results in enhancement of shoot gravitropism
AChE	Os07g0586200	LOC_Os07g39750	gravitropic response	Overexpression of acetylcholinesterase gene in rice results in enhancement of shoot gravitropism	Finally, by comparing AChE up-regulated plants with wild-type, we found that AChE overexpression causes an enhanced gravitropic response.
ACL1	Os04g0415000	LOC_Os04g33860	leaf	Overexpression of ACL1 (abaxially curled leaf 1) increased Bulliform cells and induced Abaxial curling of leaf blades in rice	The T-DNA was inserted in the promoter of a novel gene, ACL1 (Abaxially Curled Leaf 1), and led to overexpression of this gene in BY240
ACL1	Os04g0415000	LOC_Os04g33860	leaf	Overexpression of ACL1 (abaxially curled leaf 1) increased Bulliform cells and induced Abaxial curling of leaf blades in rice	Overexpression of ACL1 in wild-type rice also resulted in abaxial leaf curling
ACL1	Os04g0415000	LOC_Os04g33860	leaf	Overexpression of ACL1 (abaxially curled leaf 1) increased Bulliform cells and induced Abaxial curling of leaf blades in rice	Overexpression of ACL2, the only homolog of ACL1 in rice, also induced abaxial leaf curling
ACL1	Os04g0415000	LOC_Os04g33860	leaf	Overexpression of ACL1 (abaxially curled leaf 1) increased Bulliform cells and induced Abaxial curling of leaf blades in rice	Overexpression of ACL1 (abaxially curled leaf 1) increased Bulliform cells and induced Abaxial curling of leaf blades in rice
ACL2	Os02g0536500	LOC_Os02g33330	leaf	Overexpression of ACL1 (abaxially curled leaf 1) increased Bulliform cells and induced Abaxial curling of leaf blades in rice	Overexpression of ACL2, the only homolog of ACL1 in rice, also induced abaxial leaf curling
ACR7	Os03g0413100	LOC_Os03g29980	leaf	ACT domain repeat protein 7, ACR7, interacts with a chaperone HSP18.0-CII in rice nuclei	Gene products of ACR7 were most abundant in young developing leaf blades of rice, and ACR7 protein is specifically localized in the nucleus of the parenchyma cells of phloem and xylem in the vascular bundles
ACR7	Os03g0413100	LOC_Os03g29980	xylem	ACT domain repeat protein 7, ACR7, interacts with a chaperone HSP18.0-CII in rice nuclei	Gene products of ACR7 were most abundant in young developing leaf blades of rice, and ACR7 protein is specifically localized in the nucleus of the parenchyma cells of phloem and xylem in the vascular bundles
ACR7	Os03g0413100	LOC_Os03g29980	vascular bundle	ACT domain repeat protein 7, ACR7, interacts with a chaperone HSP18.0-CII in rice nuclei	Gene products of ACR7 were most abundant in young developing leaf blades of rice, and ACR7 protein is specifically localized in the nucleus of the parenchyma cells of phloem and xylem in the vascular bundles
ADCa|OsAdc2	Os04g0107600	LOC_Os04g01690	leaf	Molecular characterization of the Arginine decarboxylase gene family in rice	Whereas OsAdc1 is expressed in leaf, root and stem, OsAdc2 expression is restricted to stem tissue
ADCa|OsAdc2	Os04g0107600	LOC_Os04g01690	stem	Molecular characterization of the Arginine decarboxylase gene family in rice	Whereas OsAdc1 is expressed in leaf, root and stem, OsAdc2 expression is restricted to stem tissue
ADCa|OsAdc2	Os04g0107600	LOC_Os04g01690	root	Molecular characterization of the Arginine decarboxylase gene family in rice	Whereas OsAdc1 is expressed in leaf, root and stem, OsAdc2 expression is restricted to stem tissue
Adh1	Os11g0210300	LOC_Os11g10480	submergence	A Point Mutation of Adh1 Gene is Involved in the Repression of Coleoptile Elongation under Submergence in Rice	A Point Mutation of Adh1 Gene is Involved in the Repression of Coleoptile Elongation under Submergence in Rice
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	temperature	Molecular characterization of cDNA encoding for adenylate kinase of rice (Oryza sativa L.)	In order to examine the enzyme activity of the protein encoded by the rice cDNA, Adk-a was cloned into an expression vector, pUC119, which was introduced into Escherichia coli strain CV2, a temperature-sensitive mutant of adenylate kinase
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	temperature	Molecular characterization of cDNA encoding for adenylate kinase of rice (Oryza sativa L.)	We found that the transformant carrying the rice Adk-a gene in the sense orientation recovered cell growth at non-permissive high temperature (42 degrees C) and expressed enzyme activities higher than the untransformed CV2 and the transformant possessing Adk-a cDNA in the antisense orientation
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	growth	Molecular characterization of cDNA encoding for adenylate kinase of rice (Oryza sativa L.)	We found that the transformant carrying the rice Adk-a gene in the sense orientation recovered cell growth at non-permissive high temperature (42 degrees C) and expressed enzyme activities higher than the untransformed CV2 and the transformant possessing Adk-a cDNA in the antisense orientation
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	adenylate kinase	Molecular characterization of cDNA encoding for adenylate kinase of rice (Oryza sativa L.) 	Two types of genes (Adk-a, and Adk-b) encoding for adenylate kinase (AK, EC 2.7.4.3.) were isolated from the cDNA library constructed from poly(A)+ RNA of rice (Oryza sativa L.). 
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	growth	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 CONCLUSIONS: Our study reveals a novel BR signaling component OsAK3 in the regulation of grain length, and provides novel clues for uncovering the potential functions of OsAK3 in rice growth and development
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	development	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 In addition, RNA-Seq data indicate that OsAK3 is involved in a variety of biological processes that regulate BR signaling and grain development in rice
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	development	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 CONCLUSIONS: Our study reveals a novel BR signaling component OsAK3 in the regulation of grain length, and provides novel clues for uncovering the potential functions of OsAK3 in rice growth and development
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	Kinase	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	adenylate kinase	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	adenylate kinase	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 OsAK3 encodes an adenylate kinase, which regulates grain size by controlling cell expansion of rice spikelet glume
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	spikelet	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 OsAK3 encodes an adenylate kinase, which regulates grain size by controlling cell expansion of rice spikelet glume
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 Among these mutants, mutant osak3 presents shorter grain length and dwarfing phenotype
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 OsAK3 encodes an adenylate kinase, which regulates grain size by controlling cell expansion of rice spikelet glume
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 Overexpression of OsAK3 resulted in longer grain length
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 In addition, RNA-Seq data indicate that OsAK3 is involved in a variety of biological processes that regulate BR signaling and grain development in rice
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 CONCLUSIONS: Our study reveals a novel BR signaling component OsAK3 in the regulation of grain length, and provides novel clues for uncovering the potential functions of OsAK3 in rice growth and development
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain length	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain length	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 Among these mutants, mutant osak3 presents shorter grain length and dwarfing phenotype
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain length	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 Overexpression of OsAK3 resulted in longer grain length
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain length	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 CONCLUSIONS: Our study reveals a novel BR signaling component OsAK3 in the regulation of grain length, and provides novel clues for uncovering the potential functions of OsAK3 in rice growth and development
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	grain size	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 OsAK3 encodes an adenylate kinase, which regulates grain size by controlling cell expansion of rice spikelet glume
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	root	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 Lamina inclination, coleoptile elongation and root inhibition experiments showed that the osak3 mutant was less sensitive to exogenous brassinolide (BL) treatment
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	brassinosteroid	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	BR	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 In addition, RNA-Seq data indicate that OsAK3 is involved in a variety of biological processes that regulate BR signaling and grain development in rice
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	BR	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 CONCLUSIONS: Our study reveals a novel BR signaling component OsAK3 in the regulation of grain length, and provides novel clues for uncovering the potential functions of OsAK3 in rice growth and development
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	Brassinosteroid	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	BR signaling	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 In addition, RNA-Seq data indicate that OsAK3 is involved in a variety of biological processes that regulate BR signaling and grain development in rice
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	BR signaling	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 CONCLUSIONS: Our study reveals a novel BR signaling component OsAK3 in the regulation of grain length, and provides novel clues for uncovering the potential functions of OsAK3 in rice growth and development
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	lamina	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	 Lamina inclination, coleoptile elongation and root inhibition experiments showed that the osak3 mutant was less sensitive to exogenous brassinolide (BL) treatment
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	kinase	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).
Adk-a|OsAK3	Os12g0236400	LOC_Os12g13380	Brassinosteroid Signaling	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	An Adenylate Kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).
Adk-b|OsAK4	Os11g0312220	LOC_Os11g20790	adenylate kinase	Molecular characterization of cDNA encoding for adenylate kinase of rice (Oryza sativa L.) 	Two types of genes (Adk-a, and Adk-b) encoding for adenylate kinase (AK, EC 2.7.4.3.) were isolated from the cDNA library constructed from poly(A)+ RNA of rice (Oryza sativa L.). 
ADL1|OsDEK1	Os02g0709400	LOC_Os02g47970	leaf	The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice	To understand axis information in leaf development, we isolated the adaxialized leaf1 (adl1) mutant in rice, which forms abaxially rolled leaves
ADL1|OsDEK1	Os02g0709400	LOC_Os02g47970	leaf	The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice	An adl1 double mutant with the adaxially snowy leaf mutant, which has albino cells that specifically appear in the abaxial mesophyll tissue, indicated that adl1 leaves show adaxialization in both epidermal and mesophyll tissues
ADL1|OsDEK1	Os02g0709400	LOC_Os02g47970	leaf	The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice	This indicated that ADL1 may not be directly involved in determining initial leaf polarity, but rather is associated with the maintenance of axis information
ADL1|OsDEK1	Os02g0709400	LOC_Os02g47970	leaf	The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice	We propose that ADL1 plays an important role in pattern formation of the leaf and embryo by promoting proper epidermal development
ADL1|OsDEK1	Os02g0709400	LOC_Os02g47970	leaf development	The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice	To understand axis information in leaf development, we isolated the adaxialized leaf1 (adl1) mutant in rice, which forms abaxially rolled leaves
ADL1|OsDEK1	Os02g0709400	LOC_Os02g47970	shoot	The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice	Furthermore, we identified intermediate and strong alleles of the adl1 mutant that generate shootless embryos and globular-arrested embryos with aleurone layer loss, respectively
AET1	Os05g0535500	LOC_Os05g45890	temperature	Translational Regulation of Plant Response to High Temperature by a Dual Function tRNAHis Guanylyltransferase in Rice.	Furthermore, polysome profiling assays suggest that the translational status remains unaffected in the aet1 mutant, but that the translational efficiency of OsARF19 and OsARF23 is reduced; moreover, the OsARF23 protein levels are obviously decreased in the aet1 mutant under high temperature, implying that AET1 regulates auxin signaling in response to high temperature
AET1	Os05g0535500	LOC_Os05g45890	temperature	Translational Regulation of Plant Response to High Temperature by a Dual Function tRNAHis Guanylyltransferase in Rice.	Our findings provide new insights into the molecular mechanisms that AET1 plays a dual function in tRNA modification and translational control involved in the regulation of the environmental temperature response in rice
AET1	Os05g0535500	LOC_Os05g45890	auxin	Translational Regulation of Plant Response to High Temperature by a Dual Function tRNAHis Guanylyltransferase in Rice.	Furthermore, polysome profiling assays suggest that the translational status remains unaffected in the aet1 mutant, but that the translational efficiency of OsARF19 and OsARF23 is reduced; moreover, the OsARF23 protein levels are obviously decreased in the aet1 mutant under high temperature, implying that AET1 regulates auxin signaling in response to high temperature
AGO18|OsAGO18	Os07g0471300	LOC_Os07g28850	resistance	Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA.	Notably, stable transgenic expression of AGO18 confers broad-spectrum virus resistance in rice
AGO18|OsAGO18	Os07g0471300	LOC_Os07g28850	antiviral immunity	Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA	AGO18 is specifically induced by viral infection and required for antiviral immunity
AGO18|OsAGO18	Os07g0471300	LOC_Os07g28850	development	Loss of function of Oryza sativa Argonaute 18 induces male sterility and reduction in phased small RNAs.	In this manuscript, we show that Oryza sativa indica Argonaute protein AGO18 is required for male gametophyte development likely to through a small RNA-mediated mechanism
AGO18|OsAGO18	Os07g0471300	LOC_Os07g28850	development	Loss of function of Oryza sativa Argonaute 18 induces male sterility and reduction in phased small RNAs.	Although expression of rice AGO18 in specific stages of male gametogenesis has been documented, its major functions in plant development remain poorly understood
AGO18|OsAGO18	Os07g0471300	LOC_Os07g28850	development	Loss of function of Oryza sativa Argonaute 18 induces male sterility and reduction in phased small RNAs.	Here, we show that Oryza sativa indica AGO18 is involved in male gametophyte development
AGO18|OsAGO18	Os07g0471300	LOC_Os07g28850	plant development	Loss of function of Oryza sativa Argonaute 18 induces male sterility and reduction in phased small RNAs.	Although expression of rice AGO18 in specific stages of male gametogenesis has been documented, its major functions in plant development remain poorly understood
AGO18|OsAGO18	Os07g0471300	LOC_Os07g28850	fertility	Loss of function of Oryza sativa Argonaute 18 induces male sterility and reduction in phased small RNAs.	Our results indicate a distinct role for rice AGO18 in male fertility
AGO18|OsAGO18	Os07g0471300	LOC_Os07g28850	transcription factor	Jasmonate Signaling Enhances RNA Silencing and Antiviral Defense in Rice.	Mechanistically, the JA-responsive transcription factor JAMYB directly binds to the AGO18 promoter to activate AGO18 transcription
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	flower	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	In addition, aid1 mutant plants had fewer tillers and flowered 10 to 15 d later than the wild type
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	pollen	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	Spikelets of the aid1 mutant could be classified into three types based on the viability of pollen grains and the extent of anther dehiscence
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	panicle	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	AID1 was expressed in both the leaves and panicles of wild-type plants, but not in mutant plants
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	spikelet	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	cv Nipponbare) recessive mutant, anther indehiscence1 (aid1), showing partial to complete spikelet sterility
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	spikelet	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	Spikelets of the aid1 mutant could be classified into three types based on the viability of pollen grains and the extent of anther dehiscence
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	grain	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	Spikelets of the aid1 mutant could be classified into three types based on the viability of pollen grains and the extent of anther dehiscence
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	tiller	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	In addition, aid1 mutant plants had fewer tillers and flowered 10 to 15 d later than the wild type
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	anther	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	cv Nipponbare) recessive mutant, anther indehiscence1 (aid1), showing partial to complete spikelet sterility
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	anther	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	Spikelets of the aid1 mutant could be classified into three types based on the viability of pollen grains and the extent of anther dehiscence
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	sterility	The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice	cv Nipponbare) recessive mutant, anther indehiscence1 (aid1), showing partial to complete spikelet sterility
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	transcription factor	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice.	 Further studies revealed that OsMYBR57 interacts with a homeodomain transcription factor, OsHB22, which also plays a positive role in drought signaling
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	drought	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice.	 In this study, we isolated an Osmybr57 mutant that displays a drought-sensitive phenotype through a genetic screen for drought stress sensitivity
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	drought	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice.	 Further studies revealed that OsMYBR57 interacts with a homeodomain transcription factor, OsHB22, which also plays a positive role in drought signaling
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	stress	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice.	 In this study, we isolated an Osmybr57 mutant that displays a drought-sensitive phenotype through a genetic screen for drought stress sensitivity
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	drought stress	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice.	 In this study, we isolated an Osmybr57 mutant that displays a drought-sensitive phenotype through a genetic screen for drought stress sensitivity
AID1|OsMYBR57	Os06g0181300	LOC_Os06g08290	drought stress 	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice.	 In this study, we isolated an Osmybr57 mutant that displays a drought-sensitive phenotype through a genetic screen for drought stress sensitivity
akin-b|akin-beta|akin	Os05g0491200	LOC_Os05g41220	Down-regulated genes	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Down-regulated genes with U-rich sequences in their 3 untranslated region (UTR) were selected from the microarray analysis of OsTZF1-OX. Two such genes were akin and AOS.
AKR4C14|OsI_04428|OsAKR2	Os01g0847700	LOC_Os01g62870	mature leaves	Cloning and characterization of AKR4C14, a rice aldo-keto reductase, from Thai Jasmine rice	Expression level of AKR4C14 normalized to the level of Actin-1. Green tissues (i.e. mature leaves, stems, and seedling leaves) have high expression levels.
AKR4C14|OsI_04428|OsAKR2	Os01g0847700	LOC_Os01g62870	stems	Cloning and characterization of AKR4C14, a rice aldo-keto reductase, from Thai Jasmine rice	Expression level of AKR4C14 normalized to the level of Actin-1. Green tissues (i.e. mature leaves, stems, and seedling leaves) have high expression levels.
AKR4C14|OsI_04428|OsAKR2	Os01g0847700	LOC_Os01g62870	seedling leaves	Cloning and characterization of AKR4C14, a rice aldo-keto reductase, from Thai Jasmine rice	Expression level of AKR4C14 normalized to the level of Actin-1. Green tissues (i.e. mature leaves, stems, and seedling leaves) have high expression levels.
AL1	Os01g0382200	LOC_Os01g28474	vascular bundle	A novel endosperm transfer cell-containing region-specific gene and its promoter in rice	The GUS expression patterns indicated that the AL1 promoter was active exclusively in the dorsal aleurone layer adjacent to the main vascular bundle
AL2	Os09g0363100	LOC_Os09g19850	seedling	Albino Leaf 2 is involved in the splicing of chloroplast group I and II introns in rice.	Phenotypic analysis revealed that the al2 mutation caused obvious albino leaves at the early developmental stage, eventually leading to al2 seedling death
AL2	Os09g0363100	LOC_Os09g19850	chloroplast	Albino Leaf 2 is involved in the splicing of chloroplast group I and II introns in rice.	Electron microscopy investigations indicated that the chloroplast structure was disrupted in the al2 mutants at an early developmental stage and subsequently resulted in the breakdown of the entire chloroplast
AL2	Os09g0363100	LOC_Os09g19850	chloroplast	Albino Leaf 2 is involved in the splicing of chloroplast group I and II introns in rice.	Molecular cloning illustrated that AL2 encodes a chloroplast group IIA intron splicing facilitator (CRS1) in rice, which was confirmed by a genetic complementation experiment
AL2	Os09g0363100	LOC_Os09g19850	chloroplast	Albino Leaf 2 is involved in the splicing of chloroplast group I and II introns in rice.	Interestingly, we found that the expression levels of a subset of chloroplast genes that contain group IIA and IIB introns were significantly reduced in the al2 mutant compared to that in the wild type, suggesting that AL2 is a functional CRS1 in rice
AL2	Os09g0363100	LOC_Os09g19850	chloroplast	Albino Leaf 2 is involved in the splicing of chloroplast group I and II introns in rice.	Differing from the orthologous CRS1 in maize and Arabidopsis that only regulates splicing of the chloroplast group II intron, our results demonstrated that the AL2 gene is also likely to be involved in the splicing of the chloroplast group I intron
AL2	Os09g0363100	LOC_Os09g19850	chloroplast	Albino Leaf 2 is involved in the splicing of chloroplast group I and II introns in rice.	They also showed that disruption of AL2 results in the altered expression of chloroplast-associated genes, including chlorophyll biosynthetic genes, plastid-encoded polymerases and nuclear-encoded chloroplast genes
AL2	Os09g0363100	LOC_Os09g19850	seedling death	Albino Leaf 2 is involved in the splicing of chloroplast group I and II introns in rice.	Phenotypic analysis revealed that the al2 mutation caused obvious albino leaves at the early developmental stage, eventually leading to al2 seedling death
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	domestication	Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.	Our findings illuminate the molecular function of RAE2 in awn development and shed light on the independent domestication histories of Asian and African cultivated rice
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	development	Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.	Our findings illuminate the molecular function of RAE2 in awn development and shed light on the independent domestication histories of Asian and African cultivated rice
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	awn	Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.	The RAE2 precursor is specifically cleaved by SLP1 in the rice spikelet, where the mature RAE2 peptide subsequently induces awn elongation
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	awn	Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.	Our findings illuminate the molecular function of RAE2 in awn development and shed light on the independent domestication histories of Asian and African cultivated rice
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	grain	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	development	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	awn	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	grains per panicle	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.	A frame-shift insertion in gad1 destroyed the conserved cysteine residues of the peptide, resulting in a loss of function, and causing the increased number of grains per panicle, shorter grains and awnless phenotype characteristic of cultivated rice
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	grain number	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.
AL8|RAE2|GAD1	Os08g0485500	LOC_Os08g37890	grain length	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length and Awn Development in Rice Domestication.
AlaAT|OsAlaAT1	Os10g0390500	LOC_Os10g25130	nitrogen	Molecular characterization of a gene for alanine aminotransferase from rice (Oryza sativa)	These results suggest that AlaAT is involved in nitrogen metabolism during the maturation of rice seed
AlaAT|OsAlaAT1	Os10g0390500	LOC_Os10g25130	seed	Molecular characterization of a gene for alanine aminotransferase from rice (Oryza sativa)	A cDNA clone encoding alanine aminotransferase (AlaAT) has isolated from randomly sequenced clones derived from a cDNA library of maturing rice seeds by comparison to previously identified genes
AlaAT|OsAlaAT1	Os10g0390500	LOC_Os10g25130	seed	Molecular characterization of a gene for alanine aminotransferase from rice (Oryza sativa)	These results suggest that AlaAT is involved in nitrogen metabolism during the maturation of rice seed
AlaAT|OsAlaAT1	Os10g0390500	LOC_Os10g25130	starch	Alanine aminotransferase 1 (OsAlaAT1) plays an essential role in the regulation of starch storage in rice endosperm.	OsAlaAT1 is predominantly expressed in developing seeds during active starch synthesis
AlaAT|OsAlaAT1	Os10g0390500	LOC_Os10g25130	starch	Alanine aminotransferase 1 (OsAlaAT1) plays an essential role in the regulation of starch storage in rice endosperm.	Thus, our observations suggest that OsAlaAT1 plays an essential role in starch synthesis in developing seeds that are exposed to low concentrations of oxygen
AlaAT|OsAlaAT1	Os10g0390500	LOC_Os10g25130	nitrogen utilization	Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice	Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice
AlaAT|OsAlaAT1	Os10g0390500	LOC_Os10g25130	nitrogen	Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice	Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice
AlaAT|OsAlaAT1	Os10g0390500	LOC_Os10g25130	grain yield	Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice	Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice
AlaAT|OsAlaAT1	Os10g0390500	LOC_Os10g25130	grain quality	Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice	Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	mitochondria	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions	cv Nipponbare), we characterized a cDNA clone encoding mitochondrial ALDH from rice (Aldh2a)
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	mitochondria	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions	Analysis of sub-cellular localization of ALDH2a protein using green fluorescent protein and an in vitro ALDH assay using protein extracts from Escherichia coli cells that overexpressed ALDH2a indicated that ALDH2a functions in the oxidation of acetaldehyde in mitochondria
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	seedling	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b	Northern blot and immunoblot analyses revealed that ALDH2b was constitutively present in all the organs examined, whereas ALDH2a was expressed in leaves of dark-grown seedlings and panicles
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	sheath	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions	We found that the Aldh2a mRNA was present at high levels in leaves of dark-grown seedlings, mature leaf sheaths, and panicles
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	submergence	Induction of mitochondrial aldehyde dehydrogenase by submergence facilitates oxidation of acetaldehyde during re-aeration in rice	Interestingly, re-aerated rice plants showed an intense mitochondrial ALDH2a protein induction, even though ALDH2a mRNA was submergence induced and declined upon re-aeration
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	panicle	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions	We found that the Aldh2a mRNA was present at high levels in leaves of dark-grown seedlings, mature leaf sheaths, and panicles
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	seedling	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions	We found that the Aldh2a mRNA was present at high levels in leaves of dark-grown seedlings, mature leaf sheaths, and panicles
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	seedling	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions	It is interesting that expression of the rice Aldh2a gene, unlike the expression of the tobacco (Nicotiana tabacum) Aldh2a gene, was induced in rice seedlings by submergence
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	mitochondria	Induction of mitochondrial aldehyde dehydrogenase by submergence facilitates oxidation of acetaldehyde during re-aeration in rice	Interestingly, re-aerated rice plants showed an intense mitochondrial ALDH2a protein induction, even though ALDH2a mRNA was submergence induced and declined upon re-aeration
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	leaf	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions	We found that the Aldh2a mRNA was present at high levels in leaves of dark-grown seedlings, mature leaf sheaths, and panicles
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	panicle	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b	Northern blot and immunoblot analyses revealed that ALDH2b was constitutively present in all the organs examined, whereas ALDH2a was expressed in leaves of dark-grown seedlings and panicles
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	submergence	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions	It is interesting that expression of the rice Aldh2a gene, unlike the expression of the tobacco (Nicotiana tabacum) Aldh2a gene, was induced in rice seedlings by submergence
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	submergence	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions	A possible involvement of ALDH2a in the submergence tolerance of rice is discussed
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	mitochondria	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b	We suggest that the rice ALDH2a and ALDH2b genes are orthologues of maize mitochondrial ALDH genes, rf2b and rf2a, respectively
ALDH2a|OsALDH2B5	Os02g0730000	LOC_Os02g49720	mitochondria	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b
ALEX1	Os08g0456450	None	resistance	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	A T-DNA insertion line constructed using enhancer trap system showed a higher expression of ALEX1 and exerted a significant resistance to rice bacterial blight
ALEX1	Os08g0456450	None	resistance	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALEX1	Os08g0456450	None	jasmonate	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.
ALEX1	Os08g0456450	None	disease	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.
ALEX1	Os08g0456450	None	disease resistance	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.
ALEX1	Os08g0456450	None	ja	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALEX1	Os08g0456450	None	blight	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	A T-DNA insertion line constructed using enhancer trap system showed a higher expression of ALEX1 and exerted a significant resistance to rice bacterial blight
ALEX1	Os08g0456450	None	blight	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALEX1	Os08g0456450	None	JA	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALEX1	Os08g0456450	None	bacterial blight	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	A T-DNA insertion line constructed using enhancer trap system showed a higher expression of ALEX1 and exerted a significant resistance to rice bacterial blight
ALEX1	Os08g0456450	None	bacterial blight	Transcriptional Landscape of Pathogen-responsive LncRNAs in Rice Unveils the Role of ALEX1 in Jasmonate Pathway and Disease Resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALEX1	Os08g0456450	None	resistance	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	A T-DNA insertion line constructed using enhancer trap system showed a higher expression of ALEX1 and exerted a significant resistance to rice bacterial blight
ALEX1	Os08g0456450	None	resistance	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALEX1	Os08g0456450	None	jasmonate	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.
ALEX1	Os08g0456450	None	disease	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.
ALEX1	Os08g0456450	None	disease resistance	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.
ALEX1	Os08g0456450	None	ja	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALEX1	Os08g0456450	None	blight	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	A T-DNA insertion line constructed using enhancer trap system showed a higher expression of ALEX1 and exerted a significant resistance to rice bacterial blight
ALEX1	Os08g0456450	None	blight	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALEX1	Os08g0456450	None	JA	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALEX1	Os08g0456450	None	bacterial blight	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	A T-DNA insertion line constructed using enhancer trap system showed a higher expression of ALEX1 and exerted a significant resistance to rice bacterial blight
ALEX1	Os08g0456450	None	bacterial blight	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	Overexpressing ALEX1 in rice further confirmed the activation of JA pathway and resistance to bacterial blight
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	starch	Association between nonsynonymous mutations of starch synthase IIa and starch quality in rice (Oryza sativa)	Starch synthase IIa (SsIIa) is a major candidate gene for starch quality variation
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	starch	Association between nonsynonymous mutations of starch synthase IIa and starch quality in rice (Oryza sativa)	To search for the variation in SsIIa that is responsible for starch quality variation in rice, we sequenced the SsIIa exon 8 region and measured starch quality as starch disintegration in alkali for 289 accessions of cultivated rice and 57 accessions of its wild ancestor, Oryza rufipogon
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	Furthermore, OsbZIP58 was shown to bind directly to the promoters of six starch-synthesizing genes, OsAGPL3, Wx, OsSSIIa, SBE1, OsBEIIb, and ISA2, and to regulate their expression
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	grain	Association between nonsynonymous mutations of starch synthase IIa and starch quality in rice (Oryza sativa)	Variation in SsIIa enzyme activity is associated with the cohesiveness of rice grains when cooked, and our findings are consistent with selection for more cohesive grains during the domestication of tropical japonica rice
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	temperature	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch	To study the potential functional interactions of SS genes, we generated SSIIa/SSIIIa double repression lines whose kernels displayed a chalky kernel appearance and had increased amylose levels, increased pasting temperatures, and decreased viscosities
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	starch	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch	The nonadditive nature of the double mutation line suggests that SSIIa and SSIIIa interact with each other during starch synthesis
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	starch	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch	Collectively, the data showed that SSIIa and SSIIIa play distinctive, but partially overlapping, roles during rice grain starch synthesis
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	starch	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	domestication	Association between nonsynonymous mutations of starch synthase IIa and starch quality in rice (Oryza sativa)	Variation in SsIIa enzyme activity is associated with the cohesiveness of rice grains when cooked, and our findings are consistent with selection for more cohesive grains during the domestication of tropical japonica rice
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	grain	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch	Consistent with their expression domains, RNAi repression of genes that encode isozymes SSI, SSIIa, and SSIIIa had strong effects on grain development, whereas no obvious phenotypic changes were observed in transgenic plants with the other SS genes being RNAi repressed, indicating functional redundancies among the genes
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	grain	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch	Collectively, the data showed that SSIIa and SSIIIa play distinctive, but partially overlapping, roles during rice grain starch synthesis
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	starch	ALK, the key gene for gelatinization temperature, is a modifier gene for gel consistency in rice	Previous map-based cloning revealed that GT was controlled by ALK gene, which encodes a putative soluble starch synthase II-3
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	temperature	ALK, the key gene for gelatinization temperature, is a modifier gene for gel consistency in rice	ALK, the key gene for gelatinization temperature, is a modifier gene for gel consistency in rice
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	grain	Characteristics of Grain Physicochemical Properties and the Starch Structure in Rice Carrying a Mutated ALK/SSIIa Gene	ALK encoding soluble starch synthase IIa (SSIIa) is the major gene determining grain GT in rice
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	starch	Characteristics of Grain Physicochemical Properties and the Starch Structure in Rice Carrying a Mutated ALK/SSIIa Gene	ALK encoding soluble starch synthase IIa (SSIIa) is the major gene determining grain GT in rice
ALK|SSIIa	Os06g0229800	LOC_Os06g12450	quality	Genomic Regions Involved in Differences in Eating and Cooking Quality Other than Wx and Alk Genes between indica and japonica Rice Cultivars	Genomic Regions Involved in Differences in Eating and Cooking Quality Other than Wx and Alk Genes between indica and japonica Rice Cultivars
alpha1a|OsIMalpha1a	Os01g0253300	LOC_Os01g14950	defense response	OsWRKY62 and OsWRKY76 Interact with Importin ��1s for Negative Regulation of Defensive Responses in Rice Nucleus	OsWRKY62 and OsWRKY76 Interact with Importin ��1s for Negative Regulation of Defensive Responses in Rice Nucleus
alpha1a|OsIMalpha1a	Os01g0253300	LOC_Os01g14950	disease resistance	OsWRKY62 and OsWRKY76 Interact with Importin ��1s for Negative Regulation of Defensive Responses in Rice Nucleus	OsWRKY62 and OsWRKY76 Interact with Importin ��1s for Negative Regulation of Defensive Responses in Rice Nucleus
alphaAmy3|OsAmy3D|RAmy3D|OsRAM3D	Os08g0473900	LOC_Os08g36910	seed	Structural organization and differential expression of rice alpha-amylase genes	RAmy1A and RAmy3E were expressed in all tissues while RAmy3D was expressed in all tissues except the immature seeds
alphaAmy3|OsAmy3D|RAmy3D|OsRAM3D	Os08g0473900	LOC_Os08g36910	seed	Structural organization and differential expression of rice alpha-amylase genes	RAmy1A transcript was most abundant in the germinating seeds, while RAmy3D and RAmy3E transcripts were most abundant in callus and immature seeds, respectively
alphaAmy3|OsAmy3D|RAmy3D|OsRAM3D	Os08g0473900	LOC_Os08g36910	growth	A method to simplify bioreactor processing for recombinant protein production in rice cell suspension cultures	 Using the RAmy3D promoter system in transgenic rice cell suspensions results in two phases of the culture, the growth phase and the induction phase
ALS3	Os01g0674700	LOC_Os01g48380	seedling	The rice ALS3 encoding a novel pentatricopeptide repeat protein is required for chloroplast development and seedling growth.	The rice ALS3 encoding a novel pentatricopeptide repeat protein is required for chloroplast development and seedling growth.
ALS3	Os01g0674700	LOC_Os01g48380	chloroplast	The rice ALS3 encoding a novel pentatricopeptide repeat protein is required for chloroplast development and seedling growth.	The rice ALS3 encoding a novel pentatricopeptide repeat protein is required for chloroplast development and seedling growth.
ALS3	Os01g0674700	LOC_Os01g48380	development	The rice ALS3 encoding a novel pentatricopeptide repeat protein is required for chloroplast development and seedling growth.	The rice ALS3 encoding a novel pentatricopeptide repeat protein is required for chloroplast development and seedling growth.
ALT1	Os01g0779400	LOC_Os01g57110	ATPase	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice
ALT1	Os01g0779400	LOC_Os01g57110	alkaline tolerance	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice
ALT1	Os01g0779400	LOC_Os01g57110	defense	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice
ALT1	Os01g0779400	LOC_Os01g57110	oxidative stress	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice
ALT1	Os01g0779400	LOC_Os01g57110	map-based cloning	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice	Map-based cloning revealed that alt1 harbors a mutation in a chromatin remodeling ATPase gene.
ALT1	Os01g0779400	LOC_Os01g57110	alkaline stress	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice	Taken together, these results suggest that ALT1 negatively functions in alkaline tolerance mainly through the defense against oxidative damage, and provide a potential two-step strategy for improving the tolerance of rice plants to alkaline stress.
AM1	Os04g0682800	LOC_Os04g58620	seed	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Interestingly, AM1 was induced by salt and PEG, and am1 showed enhanced sensitivity to salinity in seed germination and increased tolerance to drought
AM1	Os04g0682800	LOC_Os04g58620	chloroplast	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	We found that AM1 encoded a putative KEA in chloroplast
AM1	Os04g0682800	LOC_Os04g58620	chloroplast	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Chloroplast gene expression and proteins accumulation were affected during chlorophyll biosynthesis and photosynthesis in am1 mutants
AM1	Os04g0682800	LOC_Os04g58620	drought	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Mutation of the AM1 gene causes an albino midrib phenotype and enhances tolerance to drought in rice K(+) efflux antiporter (KEA) genes encode putative potassium efflux antiporters that are mainly located in plastid-containing organisms, ranging from lower green algae to higher flowering plants
AM1	Os04g0682800	LOC_Os04g58620	drought	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Interestingly, AM1 was induced by salt and PEG, and am1 showed enhanced sensitivity to salinity in seed germination and increased tolerance to drought
AM1	Os04g0682800	LOC_Os04g58620	salinity	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Interestingly, AM1 was induced by salt and PEG, and am1 showed enhanced sensitivity to salinity in seed germination and increased tolerance to drought
AM1	Os04g0682800	LOC_Os04g58620	salt	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Interestingly, AM1 was induced by salt and PEG, and am1 showed enhanced sensitivity to salinity in seed germination and increased tolerance to drought
AM1	Os04g0682800	LOC_Os04g58620	seed germination	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Interestingly, AM1 was induced by salt and PEG, and am1 showed enhanced sensitivity to salinity in seed germination and increased tolerance to drought
AM1	Os04g0682800	LOC_Os04g58620	photosynthesis	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Chloroplast gene expression and proteins accumulation were affected during chlorophyll biosynthesis and photosynthesis in am1 mutants
AM1	Os04g0682800	LOC_Os04g58620	tolerance	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Mutation of the AM1 gene causes an albino midrib phenotype and enhances tolerance to drought in rice K(+) efflux antiporter (KEA) genes encode putative potassium efflux antiporters that are mainly located in plastid-containing organisms, ranging from lower green algae to higher flowering plants
AM1	Os04g0682800	LOC_Os04g58620	tolerance	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Interestingly, AM1 was induced by salt and PEG, and am1 showed enhanced sensitivity to salinity in seed germination and increased tolerance to drought
AM1	Os04g0682800	LOC_Os04g58620	potassium	Albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Mutation of the AM1 gene causes an albino midrib phenotype and enhances tolerance to drought in rice K(+) efflux antiporter (KEA) genes encode putative potassium efflux antiporters that are mainly located in plastid-containing organisms, ranging from lower green algae to higher flowering plants
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	development	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 AMD1 encodes a grass-specific protein exhibiting transactivation activity in the nucleus and is spatiotemporally expressed in the tapetum and microspores during pollen development
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	development	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 Taken together, we demonstrate that AMD1 is an important regulatory component involved in the TDR-mediated regulatory pathway to regulate sporopollenin biosynthesis, tapetum degradation, and exine formation for pollen development
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	pollen	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 AMD1 encodes a grass-specific protein exhibiting transactivation activity in the nucleus and is spatiotemporally expressed in the tapetum and microspores during pollen development
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	pollen	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 Further biochemical assays indicate that AMD1 directly activates the transcription of DEFECTIVE POLLEN WALL (DPW) and POLYKETIDE SYNTHASE2 (OsPKS2), which are both implicated in sporopollenin biosynthesis during exine formation
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	pollen	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 Taken together, we demonstrate that AMD1 is an important regulatory component involved in the TDR-mediated regulatory pathway to regulate sporopollenin biosynthesis, tapetum degradation, and exine formation for pollen development
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	nucleus	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 AMD1 encodes a grass-specific protein exhibiting transactivation activity in the nucleus and is spatiotemporally expressed in the tapetum and microspores during pollen development
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	tapetum	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 AMD1 encodes a grass-specific protein exhibiting transactivation activity in the nucleus and is spatiotemporally expressed in the tapetum and microspores during pollen development
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	tapetum	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 Additionally, AMD1 directly interacts with TAPETUM DEGENERATION RETARDATION (TDR), a key TF involved in the regulation of tapetum degradation and exine formation
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	tapetum	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 Taken together, we demonstrate that AMD1 is an important regulatory component involved in the TDR-mediated regulatory pathway to regulate sporopollenin biosynthesis, tapetum degradation, and exine formation for pollen development
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	tapetum degeneration	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 Additionally, AMD1 directly interacts with TAPETUM DEGENERATION RETARDATION (TDR), a key TF involved in the regulation of tapetum degradation and exine formation
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	pollen development	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 AMD1 encodes a grass-specific protein exhibiting transactivation activity in the nucleus and is spatiotemporally expressed in the tapetum and microspores during pollen development
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	pollen development	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 Taken together, we demonstrate that AMD1 is an important regulatory component involved in the TDR-mediated regulatory pathway to regulate sporopollenin biosynthesis, tapetum degradation, and exine formation for pollen development
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	pollen wall	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	 Further biochemical assays indicate that AMD1 directly activates the transcription of DEFECTIVE POLLEN WALL (DPW) and POLYKETIDE SYNTHASE2 (OsPKS2), which are both implicated in sporopollenin biosynthesis during exine formation
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	transcription factor	POLLEN WALL ABORTION 1 is essential for pollen wall development in rice.	 PWA1 interacted with the transcription factor TAPETUM DEGENERATION RETARDATION (TDR)-INTERACTING PROTEIN2 (TIP2, also named bHLH142) in vivo and in vitro
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	development	POLLEN WALL ABORTION 1 is essential for pollen wall development in rice.	 Further studies suggested that PWA1 has transcriptional activation activity and participates in pollen intine development through the β-glucosidase Os12BGlu38
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	pollen	POLLEN WALL ABORTION 1 is essential for pollen wall development in rice.	 Further studies suggested that PWA1 has transcriptional activation activity and participates in pollen intine development through the β-glucosidase Os12BGlu38
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	map-based cloning	POLLEN WALL ABORTION 1 is essential for pollen wall development in rice.	 Map-based cloning, genetic complementation, and gene knockout experiments revealed that PWA1 corresponds to the gene LOC_Os01g55094 encoding a coiled-coil domain-containing protein
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	tapetum	POLLEN WALL ABORTION 1 is essential for pollen wall development in rice.	 PWA1 localized to the nucleus, and PWA1 was expressed in the tapetum and microspores
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	tapetum	POLLEN WALL ABORTION 1 is essential for pollen wall development in rice.	 PWA1 interacted with the transcription factor TAPETUM DEGENERATION RETARDATION (TDR)-INTERACTING PROTEIN2 (TIP2, also named bHLH142) in vivo and in vitro
AMD1|PWA1	Os01g0755100	LOC_Os01g55094	tapetum degeneration	POLLEN WALL ABORTION 1 is essential for pollen wall development in rice.	 PWA1 interacted with the transcription factor TAPETUM DEGENERATION RETARDATION (TDR)-INTERACTING PROTEIN2 (TIP2, also named bHLH142) in vivo and in vitro
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	starch	The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids	The well-characterized secretory glycoprotein, rice (Oryza sativa) alpha-amylase isoform I-1 (AmyI-1), was localized within the plastids and proved to be involved in the degradation of starch granules in the organelles of rice cells
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	gibberellin	Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone	Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	transcription factor	Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone	Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	seed	Two cis-acting elements necessary and sufficient for gibberellin-upregulated proteinase expression in rice seeds	CARE and GARE were also found in the promoters of a rice alpha-amylase gene, RAmy1A, and a barley proteinase gene, EPB1, which are expressed in germinating seeds
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	gibberellin	Functional dissection of a sugar-repressed α-amylase gene (RAmy1A) promoter in rice embryos	The gibberellin-inducible rice α-amylase gene, RAmy1A, was demonstrated to be sugar repressed in rice embryos and functional dissection of the promoter of RAmy1A in relation of its sugar-modulated expression was performed
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	leaf	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)	In this study, RAmy1A was expressed under the senescence-specific promoter of SAG12, which was designed to degrade starch in the leaf sheath and stem during grain filling
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	stem	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)	In this study, RAmy1A was expressed under the senescence-specific promoter of SAG12, which was designed to degrade starch in the leaf sheath and stem during grain filling
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	grain	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	grain	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)	In this study, RAmy1A was expressed under the senescence-specific promoter of SAG12, which was designed to degrade starch in the leaf sheath and stem during grain filling
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	starch	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)	In this study, RAmy1A was expressed under the senescence-specific promoter of SAG12, which was designed to degrade starch in the leaf sheath and stem during grain filling
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	sheath	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)	In this study, RAmy1A was expressed under the senescence-specific promoter of SAG12, which was designed to degrade starch in the leaf sheath and stem during grain filling
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	sheath	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)	RAmy1A mRNA successfully accumulated in the leaf, stem, and sheath of transgenic plants after anthesis
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	grain filling	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)
AmyI-1|RAmy1A	Os02g0765600	LOC_Os02g52710	grain filling	Senescence-Specific Expression of RAmy1A Accelerates Non-structural Carbohydrate Remobilization and Grain Filling in Rice ( Oryza sativa L.)	In this study, RAmy1A was expressed under the senescence-specific promoter of SAG12, which was designed to degrade starch in the leaf sheath and stem during grain filling
An-1	Os04g0350700	LOC_Os04g28280	grains per panicle	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	The nearly-isogenic line (NIL-An-1) carrying a wild allele An-1 in the genetic background of the awnless indica Guangluai4 produces long awns and longer grains, but significantly fewer grains per panicle compared with Guangluai4
An-1	Os04g0350700	LOC_Os04g28280	grain yield	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Thus, we propose that awn loss was favored and strongly selected by humans, as genetic variations at the An-1 locus that cause awn loss would increase grain numbers and subsequently improve grain yield in cultivated rice
An-1	Os04g0350700	LOC_Os04g28280	grain number	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Transgenic studies confirmed that An-1 positively regulates awn elongation, but negatively regulates grain number per panicle
An-1	Os04g0350700	LOC_Os04g28280	grain number	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Thus, we propose that awn loss was favored and strongly selected by humans, as genetic variations at the An-1 locus that cause awn loss would increase grain numbers and subsequently improve grain yield in cultivated rice
An-1	Os04g0350700	LOC_Os04g28280	grain number	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice
An-1	Os04g0350700	LOC_Os04g28280	awn	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	We report here the molecular cloning of a major quantitative trait locus, An-1, which regulates long awn formation in O
An-1	Os04g0350700	LOC_Os04g28280	awn	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Transgenic studies confirmed that An-1 positively regulates awn elongation, but negatively regulates grain number per panicle
An-1	Os04g0350700	LOC_Os04g28280	awn	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Genetic variations in the An-1 locus were found to be associated with awn loss in cultivated rice
An-1	Os04g0350700	LOC_Os04g28280	awn	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Thus, we propose that awn loss was favored and strongly selected by humans, as genetic variations at the An-1 locus that cause awn loss would increase grain numbers and subsequently improve grain yield in cultivated rice
An-1	Os04g0350700	LOC_Os04g28280	awn	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice
An-1	Os04g0350700	LOC_Os04g28280	panicle	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	The nearly-isogenic line (NIL-An-1) carrying a wild allele An-1 in the genetic background of the awnless indica Guangluai4 produces long awns and longer grains, but significantly fewer grains per panicle compared with Guangluai4
An-1	Os04g0350700	LOC_Os04g28280	panicle	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Transgenic studies confirmed that An-1 positively regulates awn elongation, but negatively regulates grain number per panicle
An-1	Os04g0350700	LOC_Os04g28280	yield	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Thus, we propose that awn loss was favored and strongly selected by humans, as genetic variations at the An-1 locus that cause awn loss would increase grain numbers and subsequently improve grain yield in cultivated rice
An-1	Os04g0350700	LOC_Os04g28280	grain	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	The nearly-isogenic line (NIL-An-1) carrying a wild allele An-1 in the genetic background of the awnless indica Guangluai4 produces long awns and longer grains, but significantly fewer grains per panicle compared with Guangluai4
An-1	Os04g0350700	LOC_Os04g28280	grain	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Transgenic studies confirmed that An-1 positively regulates awn elongation, but negatively regulates grain number per panicle
An-1	Os04g0350700	LOC_Os04g28280	grain	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	Thus, we propose that awn loss was favored and strongly selected by humans, as genetic variations at the An-1 locus that cause awn loss would increase grain numbers and subsequently improve grain yield in cultivated rice
An-1	Os04g0350700	LOC_Os04g28280	grain	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice
An-1	Os04g0350700	LOC_Os04g28280	grain size	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice
An-1	Os04g0350700	LOC_Os04g28280	cell division	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice	An-1 encodes a basic helix-loop-helix protein, which regulates cell division
An-1	Os04g0350700	LOC_Os04g28280	awn	Natural alleles of GLA for grain length and awn development were differently domesticated in rice subspecies japonica and indica.	Analyses of minimum spanning trees and introgression regions demonstrated that An-1, an important gene for awn formation, was preferentially domesticated, and its mutation to an-1 was followed by GLA and An-2
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	cold tolerance	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	oxidative	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	Both factors were reduced by OsAOX1a overexpression, which revealed that OsAOX1a could reduce oxidative damage under cold stress
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	oxidative	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	Taken together, our results suggested that overexpressing OsAOX1a could improve growth performance of rice under cold stress, which might be closely related to the reduction of reactive oxygen species generation and oxidative damage
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	temperature	Transcript levels of tandem-arranged alternative oxidase genes in rice are increased by low temperature	Steady-state mRNA levels of both of the genes for AOX1a and AOX1b were increased under low temperature (4 degrees C)
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	seedling	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	We found that OsAOX1a overexpression could strongly enhance the cold growth of seedlings, especially with respect to root extension
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	mitochondria	Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes	The results suggest that only the mitochondrial SOD, OsMSD, attenuated the stress induction of OsAOX1a/b specifically
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	mitochondria	Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes	Therefore, our findings demonstrate that abiotic stress initiates the MRR on OsAOX1a/b and that mitochondrial O2
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	growth	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	We found that OsAOX1a overexpression could strongly enhance the cold growth of seedlings, especially with respect to root extension
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	growth	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	Taken together, our results suggested that overexpressing OsAOX1a could improve growth performance of rice under cold stress, which might be closely related to the reduction of reactive oxygen species generation and oxidative damage
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	cold stress	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	Both factors were reduced by OsAOX1a overexpression, which revealed that OsAOX1a could reduce oxidative damage under cold stress
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	cold stress	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	Taken together, our results suggested that overexpressing OsAOX1a could improve growth performance of rice under cold stress, which might be closely related to the reduction of reactive oxygen species generation and oxidative damage
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	root	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	We found that OsAOX1a overexpression could strongly enhance the cold growth of seedlings, especially with respect to root extension
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	mitochondria	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	This idea was supported by the up-regulation of alternative oxidase 1a (AOX1a), which is known to be regulated by mitochondrial retrograde signaling, in DCW11 knockdown lines
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	abiotic stress	Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes	In this study, we analysed the early abiotic stress response of the rice OsAOX1 genes, and the induction of OsAOX1a and OsAOX1b (OsAOX1a/b) was selected as a working model for the stress-induced MRR studies
AOX1a|OsAOX1a	Os04g0600200	LOC_Os04g51150	abiotic stress	Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes	Therefore, our findings demonstrate that abiotic stress initiates the MRR on OsAOX1a/b and that mitochondrial O2
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	The overexpression of AP37 and AP59 in rice under the control of the constitutive promoter OsCc1 increased the tolerance to drought and high salinity at the vegetative stage
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	More importantly, the OsCc1:AP37 plants showed significantly enhanced drought tolerance in the field, which increased grain yield by 16% to 57% over controls under severe drought conditions, yet exhibited no significant difference under normal growth conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	Our results suggest that the AP37 gene has the potential to improve drought tolerance in rice without causing undesirable growth phenotypes
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	stem	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice	We discovered a nucleus-localized ERF gene in rice (Oryza sativa), OsERF3, that was rapidly up-regulated in response to feeding by the rice striped stem borer (SSB) Chilo suppressalis
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	salinity	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	The overexpression of AP37 and AP59 in rice under the control of the constitutive promoter OsCc1 increased the tolerance to drought and high salinity at the vegetative stage
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	transcription factor	Isolation and identification of an AP2/ERF factor that binds an allelic cis-element of rice gene LRK6	These results suggest that OsERF3, an AP2 (APETALA 2 Gene)/ERF transcription factor, binds the LRK6 promoter at this new motif, which might cause differential expression of LRK6 in the 93-11/Nipponbare hybrid
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	ABA	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	Here, we first revealed that the expression of OsERF3 was induced by drought, salt, ACC and ABA treatment
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	temperature	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	Increased tolerance to low temperatures was observed only in OsCc1:AP37 plants
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	ethylene	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	OsERF3 is a transcriptional repressor with an ethylene-responsive element-binding factor-associated amphiphilic repression (EAR) motif (F/LDLNxxP), which transcriptionally represses the ethylene emission and drought tolerance in rice
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	ethylene	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	Thus, our data reveal that the EAR motif is required for OsERF3 to transcriptionally regulate the ethylene synthesis and drought tolerance in rice, providing new insight to the roles of ethylene-response factor proteins in regulating ethylene biosynthesis and stress response
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	ethylene	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	growth	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	More importantly, the OsCc1:AP37 plants showed significantly enhanced drought tolerance in the field, which increased grain yield by 16% to 57% over controls under severe drought conditions, yet exhibited no significant difference under normal growth conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	growth	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	Our results suggest that the AP37 gene has the potential to improve drought tolerance in rice without causing undesirable growth phenotypes
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	defense	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice	We propose that OsERF3 affects early components of herbivore-induced defense responses by suppressing MAPK repressors and modulating JA, SA, ethylene and H(2)O(2) pathways as well as plant resistance
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	transcription factor	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	grain	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	More importantly, the OsCc1:AP37 plants showed significantly enhanced drought tolerance in the field, which increased grain yield by 16% to 57% over controls under severe drought conditions, yet exhibited no significant difference under normal growth conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	grain	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	yield	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	More importantly, the OsCc1:AP37 plants showed significantly enhanced drought tolerance in the field, which increased grain yield by 16% to 57% over controls under severe drought conditions, yet exhibited no significant difference under normal growth conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	yield	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	ethylene	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice	We propose that OsERF3 affects early components of herbivore-induced defense responses by suppressing MAPK repressors and modulating JA, SA, ethylene and H(2)O(2) pathways as well as plant resistance
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	OsERF3 is a transcriptional repressor with an ethylene-responsive element-binding factor-associated amphiphilic repression (EAR) motif (F/LDLNxxP), which transcriptionally represses the ethylene emission and drought tolerance in rice
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	Here, we first revealed that the expression of OsERF3 was induced by drought, salt, ACC and ABA treatment
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	Thus, our data reveal that the EAR motif is required for OsERF3 to transcriptionally regulate the ethylene synthesis and drought tolerance in rice, providing new insight to the roles of ethylene-response factor proteins in regulating ethylene biosynthesis and stress response
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	insect	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice	On the other hand, OsERF3 was slightly suppressed by the rice brown planthopper (BPH) Nilaparvata lugens (Stål) and increased susceptibility to this piercing sucking insect, possibly by suppressing H(2)O(2) biosynthesis
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	insect	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice	Our results also illustrate that OsERF3 acts as a central switch that gears the plant's metabolism towards an appropriate response to chewing or piercing/sucking insects
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	jasmonate	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice	Antisense and over-expression of OsERF3 revealed that it positively affects transcript levels of two mitogen-activated protein kinases (MAPKs) and two WRKY genes as well as concentrations of jasmonate (JA), salicylate (SA) and the activity of trypsin protease inhibitors (TrypPIs)
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	ethylene	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Moreover, overexpression of OsERF3/OsAP2-39 suppressed ethylene synthesis
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	ethylene	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	In addition, application of ACC recovered the drought-sensitive phenotype in the lines overexpressing OsERF3, showing that ethylene production contributed to drought response in rice
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	ethylene	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	grain yield	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	More importantly, the OsCc1:AP37 plants showed significantly enhanced drought tolerance in the field, which increased grain yield by 16% to 57% over controls under severe drought conditions, yet exhibited no significant difference under normal growth conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	grain yield	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	brown planthopper	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice	On the other hand, OsERF3 was slightly suppressed by the rice brown planthopper (BPH) Nilaparvata lugens (Stål) and increased susceptibility to this piercing sucking insect, possibly by suppressing H(2)O(2) biosynthesis
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	defense response	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice	We propose that OsERF3 affects early components of herbivore-induced defense responses by suppressing MAPK repressors and modulating JA, SA, ethylene and H(2)O(2) pathways as well as plant resistance
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	In addition, application of ACC recovered the drought-sensitive phenotype in the lines overexpressing OsERF3, showing that ethylene production contributed to drought response in rice
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	vegetative	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	The overexpression of AP37 and AP59 in rice under the control of the constitutive promoter OsCc1 increased the tolerance to drought and high salinity at the vegetative stage
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought tolerance	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	More importantly, the OsCc1:AP37 plants showed significantly enhanced drought tolerance in the field, which increased grain yield by 16% to 57% over controls under severe drought conditions, yet exhibited no significant difference under normal growth conditions
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought tolerance	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	Our results suggest that the AP37 gene has the potential to improve drought tolerance in rice without causing undesirable growth phenotypes
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought tolerance	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	OsERF3 is a transcriptional repressor with an ethylene-responsive element-binding factor-associated amphiphilic repression (EAR) motif (F/LDLNxxP), which transcriptionally represses the ethylene emission and drought tolerance in rice
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought tolerance	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	Thus, our data reveal that the EAR motif is required for OsERF3 to transcriptionally regulate the ethylene synthesis and drought tolerance in rice, providing new insight to the roles of ethylene-response factor proteins in regulating ethylene biosynthesis and stress response
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought tolerance	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	salt	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance	Here, we first revealed that the expression of OsERF3 was induced by drought, salt, ACC and ABA treatment
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	drought tolerance	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	crown root development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Functional analysis revealed that ERF3 was essential for crown root development and acts in auxin- and cytokinin-responsive gene expression.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	root development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Functional analysis revealed that ERF3 was essential for crown root development and acts in auxin- and cytokinin-responsive gene expression.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Functional analysis revealed that ERF3 was essential for crown root development and acts in auxin- and cytokinin-responsive gene expression.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	auxin	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Functional analysis revealed that ERF3 was essential for crown root development and acts in auxin- and cytokinin-responsive gene expression.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	cytokinin	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Functional analysis revealed that ERF3 was essential for crown root development and acts in auxin- and cytokinin-responsive gene expression.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	crown root development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Also, increased expression of ERF3 could partially complement wox11, indicating that the two genes functioned cooperatively to regulate crown root development.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	root development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Also, increased expression of ERF3 could partially complement wox11, indicating that the two genes functioned cooperatively to regulate crown root development.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Also, increased expression of ERF3 could partially complement wox11, indicating that the two genes functioned cooperatively to regulate crown root development.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	crown root elongation	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	root elongation	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	crown root initiation	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation.
AP37|OsERF3	Os01g0797600	LOC_Os01g58420	root initiation	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation.
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Expression of OsBIERF1, OsBIERF3 and OsBIERF4 was induced by treatments with BTH and salicylic acid, chemical inducers capable of inducing disease resistance response in rice
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	salicylic acid	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Expression of OsBIERF1, OsBIERF3 and OsBIERF4 was induced by treatments with BTH and salicylic acid, chemical inducers capable of inducing disease resistance response in rice
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	blast	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	In the BTH-treated rice seedlings, expression of OsBIERF1, OsBIERF3 and OsBIERF4 was further induced by infection with Magnaporthe grisea, the rice blast fungus, as compared with those in water-treated seedlings
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	blast	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	The rice OsBIERF3 encodes a protein belonging to the ethylene-responsive element binding protein (EREBP) transcription factor family and was shown to be induced by treatments with chemical inducers of disease resistance response, infection with the blast fungus, Magnaporthe grisea, and by treatments with some abiotic stress conditions, e
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	grain	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	In contrast, grain yield in OsCc1:AP59 plants in the field was reduced by 23% to 43% compared with controls under both normal and drought stress conditions
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	leaf	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	To better understand the function of OsBIERF3 in disease resistance response and abiotic tolerance, we overexpressed the OsBIERF3 gene in tobacco by Agrobacterium-mediated leaf disc transformation with a construct containing the OsBIERF3 ORF under control of the cauliflower mosaic virus 35S promoter
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	drought	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Moreover, OsBIERF1, OsBIERF3 and OsBIERF4 were also up-regulated by salt, cold, drought and wounding
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	salinity	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	The overexpression of AP37 and AP59 in rice under the control of the constitutive promoter OsCc1 increased the tolerance to drought and high salinity at the vegetative stage
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease resistance	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Expression of OsBIERF1, OsBIERF3 and OsBIERF4 was induced by treatments with BTH and salicylic acid, chemical inducers capable of inducing disease resistance response in rice
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	flower	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	To better understand the function of OsBIERF3 in disease resistance response and abiotic tolerance, we overexpressed the OsBIERF3 gene in tobacco by Agrobacterium-mediated leaf disc transformation with a construct containing the OsBIERF3 ORF under control of the cauliflower mosaic virus 35S promoter
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease resistance	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	The rice OsBIERF3 encodes a protein belonging to the ethylene-responsive element binding protein (EREBP) transcription factor family and was shown to be induced by treatments with chemical inducers of disease resistance response, infection with the blast fungus, Magnaporthe grisea, and by treatments with some abiotic stress conditions, e
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease resistance	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	To better understand the function of OsBIERF3 in disease resistance response and abiotic tolerance, we overexpressed the OsBIERF3 gene in tobacco by Agrobacterium-mediated leaf disc transformation with a construct containing the OsBIERF3 ORF under control of the cauliflower mosaic virus 35S promoter
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease resistance	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Our results suggest that OsBIERF3 may play important roles in disease resistance response and salt tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease resistance	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	The rice OsBIERF3 encodes a protein belonging to the ethylene-responsive element binding protein (EREBP) transcription factor family and was shown to be induced by treatments with chemical inducers of disease resistance response, infection with the blast fungus, Magnaporthe grisea, and by treatments with some abiotic stress conditions, e
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	To better understand the function of OsBIERF3 in disease resistance response and abiotic tolerance, we overexpressed the OsBIERF3 gene in tobacco by Agrobacterium-mediated leaf disc transformation with a construct containing the OsBIERF3 ORF under control of the cauliflower mosaic virus 35S promoter
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Our results suggest that OsBIERF3 may play important roles in disease resistance response and salt tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	disease	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	drought	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	The overexpression of AP37 and AP59 in rice under the control of the constitutive promoter OsCc1 increased the tolerance to drought and high salinity at the vegetative stage
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	drought	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	In contrast, grain yield in OsCc1:AP59 plants in the field was reduced by 23% to 43% compared with controls under both normal and drought stress conditions
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	grain yield	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	In contrast, grain yield in OsCc1:AP59 plants in the field was reduced by 23% to 43% compared with controls under both normal and drought stress conditions
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	seedling	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	In the BTH-treated rice seedlings, expression of OsBIERF1, OsBIERF3 and OsBIERF4 was further induced by infection with Magnaporthe grisea, the rice blast fungus, as compared with those in water-treated seedlings
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	salt	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Moreover, the OsBIERF3-overexpressing transgenic tobacco plants also showed increased tolerance to salt stress
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	salt	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Our results suggest that OsBIERF3 may play important roles in disease resistance response and salt tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	salt	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	ethylene	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	The rice OsBIERF3 encodes a protein belonging to the ethylene-responsive element binding protein (EREBP) transcription factor family and was shown to be induced by treatments with chemical inducers of disease resistance response, infection with the blast fungus, Magnaporthe grisea, and by treatments with some abiotic stress conditions, e
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	yield	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	In contrast, grain yield in OsCc1:AP59 plants in the field was reduced by 23% to 43% compared with controls under both normal and drought stress conditions
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	salt tolerance	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Our results suggest that OsBIERF3 may play important roles in disease resistance response and salt tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	salt tolerance	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	salt	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Moreover, OsBIERF1, OsBIERF3 and OsBIERF4 were also up-regulated by salt, cold, drought and wounding
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	abiotic stress	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	The rice OsBIERF3 encodes a protein belonging to the ethylene-responsive element binding protein (EREBP) transcription factor family and was shown to be induced by treatments with chemical inducers of disease resistance response, infection with the blast fungus, Magnaporthe grisea, and by treatments with some abiotic stress conditions, e
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	vegetative	Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions	The overexpression of AP37 and AP59 in rice under the control of the constitutive promoter OsCc1 increased the tolerance to drought and high salinity at the vegetative stage
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	salt stress	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	Moreover, the OsBIERF3-overexpressing transgenic tobacco plants also showed increased tolerance to salt stress
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	transcription factor	Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco	The rice OsBIERF3 encodes a protein belonging to the ethylene-responsive element binding protein (EREBP) transcription factor family and was shown to be induced by treatments with chemical inducers of disease resistance response, infection with the blast fungus, Magnaporthe grisea, and by treatments with some abiotic stress conditions, e
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	transcription factor	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	transcription factor	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	We previously showed that overexpression of the rice ERF transcription factor gene OsBIERF3 in tobacco increased resistance against different pathogens
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	resistance	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	We previously showed that overexpression of the rice ERF transcription factor gene OsBIERF3 in tobacco increased resistance against different pathogens
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	tolerance	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	tolerance	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	 Here, we report the function of OsBIERF3 in rice immunity and abiotic stress tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	cold tolerance	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	abiotic stress	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	 Here, we report the function of OsBIERF3 in rice immunity and abiotic stress tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	stress	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	 Here, we report the function of OsBIERF3 in rice immunity and abiotic stress tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	immunity	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	immunity	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	 Here, we report the function of OsBIERF3 in rice immunity and abiotic stress tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	immunity	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	 These data demonstrate that OsBIERF3 positively contributes to immunity against M
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	biotic stress	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	 Here, we report the function of OsBIERF3 in rice immunity and abiotic stress tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	cold	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	stress tolerance	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	 Here, we report the function of OsBIERF3 in rice immunity and abiotic stress tolerance
AP59|OsBIERF3|OsAP59	Os02g0654700	LOC_Os02g43790	bacterial disease	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates Cold Tolerance in Rice.
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Previously, we have shown that an antagonistic pair of basic helix-loop-helix (bHLH) proteins, POSITIVE REGULATOR OF GRAIN LENGTH 1 (PGL1) and ANTAGONIST OF PGL1 (APG), is involved in controlling rice grain length
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	PGL2 interacts with a typical bHLH protein APG, a negative regulator of rice grain length and weight, in vitro and in vivo
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	These findings suggest that PGL2 and PGL1 redundantly suppress the function of APG by forming heterodimers to positively regulate the rice grain length, while the pathway through which BU1, the closest homolog of PGL2, controls grain length is independent of APG
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Previously, we have shown that an antagonistic pair of basic helix-loop-helix (bHLH) proteins, POSITIVE REGULATOR OF GRAIN LENGTH 1 (PGL1) and ANTAGONIST OF PGL1 (APG), is involved in controlling rice grain length
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	PGL2 interacts with a typical bHLH protein APG, a negative regulator of rice grain length and weight, in vitro and in vivo
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	These findings suggest that PGL2 and PGL1 redundantly suppress the function of APG by forming heterodimers to positively regulate the rice grain length, while the pathway through which BU1, the closest homolog of PGL2, controls grain length is independent of APG
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain length	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	PGL1-APG represents a new grain length and weight-controlling pathway in which APG is a negative regulator whose function is inhibited by PGL1
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	Transcription of two known grain-length-related genes, GS3 and SRS3, was largely unaffected in the PGL1-overexpressing and APG-silenced plants
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	grain	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	PGL1-APG represents a new grain length and weight-controlling pathway in which APG is a negative regulator whose function is inhibited by PGL1
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	tolerance	Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice.	Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice.
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	tolerance	Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice.	Based on these results, we propose that phyB deficiency positively regulates OsDREB1 expression through OsPIL16 to enhance cell membrane integrity and to reduce the malondialdehyde concentration, resulting in the improved cold tolerance of the phyB mutants
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	cold tolerance	Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice.	Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice.
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	cold tolerance	Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice.	Based on these results, we propose that phyB deficiency positively regulates OsDREB1 expression through OsPIL16 to enhance cell membrane integrity and to reduce the malondialdehyde concentration, resulting in the improved cold tolerance of the phyB mutants
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	cold stress	Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice.	Expression pattern analyses revealed that OsPIL16 transcripts were induced by cold stress and was significantly higher in the phyB mutant than in the WT
APG|OsPIL16	Os05g0139100	LOC_Os05g04740	stress	Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice.	Expression pattern analyses revealed that OsPIL16 transcripts were induced by cold stress and was significantly higher in the phyB mutant than in the WT
APIP10	Os02g0182900	LOC_Os02g09060	resistance	The E3 Ligase APIP10 Connects the Effector AvrPiz-t to the NLR Receptor Piz-t in Rice.	Conversely, silencing of APIP10 in the Piz-t background causes cell death, significant accumulation of Piz-t, and enhanced resistance to M
APIP10	Os02g0182900	LOC_Os02g09060	defense	The E3 Ligase APIP10 Connects the Effector AvrPiz-t to the NLR Receptor Piz-t in Rice.	Silencing of APIP10 in the non-Piz-t background compromises the basal defense against M
APIP10	Os02g0182900	LOC_Os02g09060	magnaporthe oryzae	The E3 Ligase APIP10 Connects the Effector AvrPiz-t to the NLR Receptor Piz-t in Rice.	Here, we report that the avirulence effector AvrPiz-t from Magnaporthe oryzae targets the rice E3 ligase APIP10 for degradation, but that APIP10, in return, ubiquitinates AvrPiz-t and thereby causes its degradation
APIP10	Os02g0182900	LOC_Os02g09060	cell death	The E3 Ligase APIP10 Connects the Effector AvrPiz-t to the NLR Receptor Piz-t in Rice.	Conversely, silencing of APIP10 in the Piz-t background causes cell death, significant accumulation of Piz-t, and enhanced resistance to M
APIP12	Os01g0383900	LOC_Os01g28690	resistance	The Nup98 Homolog APIP12 Targeted by the Effector AvrPiz-t is Involved in Rice Basal Resistance Against Magnaporthe oryzae.	The Nup98 Homolog APIP12 Targeted by the Effector AvrPiz-t is Involved in Rice Basal Resistance Against Magnaporthe oryzae.
APIP12	Os01g0383900	LOC_Os01g28690	resistance	The Nup98 Homolog APIP12 Targeted by the Effector AvrPiz-t is Involved in Rice Basal Resistance Against Magnaporthe oryzae.	It is worth noting that neither knockout/knockdown nor overexpression of APIP12 attenuates Piz-t resistance
APIP12	Os01g0383900	LOC_Os01g28690	resistance	The Nup98 Homolog APIP12 Targeted by the Effector AvrPiz-t is Involved in Rice Basal Resistance Against Magnaporthe oryzae.	Taken together, our results demonstrate that APIP12 is a virulence target of AvrPiz-t and is involved in the basal resistance against M
APIP12	Os01g0383900	LOC_Os01g28690	magnaporthe oryzae	The Nup98 Homolog APIP12 Targeted by the Effector AvrPiz-t is Involved in Rice Basal Resistance Against Magnaporthe oryzae.	The Nup98 Homolog APIP12 Targeted by the Effector AvrPiz-t is Involved in Rice Basal Resistance Against Magnaporthe oryzae.
APIP4	Os01g0124200	LOC_Os01g03340	resistance	A Fungal Effector and a Rice NLR Protein Have Antagonistic Effects on a Bowman-Birk Trypsin Inhibitor.	Knock-out of APIP4 in rice enhanced susceptibility and overexpression of APIP4 increased resistance to the fungal pathogen Magnaporthe oryzae
APIP4	Os01g0124200	LOC_Os01g03340	magnaporthe oryzae	A Fungal Effector and a Rice NLR Protein Have Antagonistic Effects on a Bowman-Birk Trypsin Inhibitor.	Knock-out of APIP4 in rice enhanced susceptibility and overexpression of APIP4 increased resistance to the fungal pathogen Magnaporthe oryzae
APIP4	Os01g0124200	LOC_Os01g03340	R protein	A Fungal Effector and a Rice NLR Protein Have Antagonistic Effects on a Bowman-Birk Trypsin Inhibitor.	By contrast, the rice NLR protein Piz-t interacted with APIP4 enhancing APIP4 transcript and protein levels, and protease inhibitor activity
APIP4	Os01g0124200	LOC_Os01g03340	immunity	A Fungal Effector and a Rice NLR Protein Have Antagonistic Effects on a Bowman-Birk Trypsin Inhibitor.	Here, we show that the rice (Oryza sativa) BBI protein APIP4 is  a common target of a fungal effector and an NLR receptor for innate immunity
APIP4	Os01g0124200	LOC_Os01g03340	innate immunity	A Fungal Effector and a Rice NLR Protein Have Antagonistic Effects on a Bowman-Birk Trypsin Inhibitor.	Here, we show that the rice (Oryza sativa) BBI protein APIP4 is  a common target of a fungal effector and an NLR receptor for innate immunity
APIP4	Os01g0124200	LOC_Os01g03340	pathogen	A Fungal Effector and a Rice NLR Protein Have Antagonistic Effects on a Bowman-Birk Trypsin Inhibitor.	Knock-out of APIP4 in rice enhanced susceptibility and overexpression of APIP4 increased resistance to the fungal pathogen Magnaporthe oryzae
APIP5|OsbZIP53	Os06g0716800	LOC_Os06g50310	transcription factor	Immunity to Rice Blast Disease by Suppression of Effector-Triggered Necrosis.	<U+00A0>oryzae effector AvrPiz-t interacts with the bZIP-type transcription factor APIP5 in the cytoplasm and suppresses its transcriptional activity and protein accumulation at the necrotrophic stage
APIP5|OsbZIP53	Os06g0716800	LOC_Os06g50310	cell death	Immunity to Rice Blast Disease by Suppression of Effector-Triggered Necrosis.	Silencing of APIP5 in transgenic rice leads to cell death, and the<U+00A0>phenotype is enhanced by the expression of AvrPiz-t
APIP5|OsbZIP53	Os06g0716800	LOC_Os06g50310	cytoplasm	Immunity to Rice Blast Disease by Suppression of Effector-Triggered Necrosis.	<U+00A0>oryzae effector AvrPiz-t interacts with the bZIP-type transcription factor APIP5 in the cytoplasm and suppresses its transcriptional activity and protein accumulation at the necrotrophic stage
APIP6	Os05g0154600	LOC_Os05g06270	defense	The Magnaporthe oryzae effector AvrPiz-t targets the RING E3 ubiquitin ligase APIP6 to suppress pathogen-associated molecular pattern-triggered immunity in rice	Silencing of APIP6 in transgenic rice leads to a significant reduction of flg22-induced ROS generation, suppression of defense-related gene expression, and enhanced susceptibility of rice plants to M
APIP6	Os05g0154600	LOC_Os05g06270	magnaporthe oryzae	The Magnaporthe oryzae effector AvrPiz-t targets the RING E3 ubiquitin ligase APIP6 to suppress pathogen-associated molecular pattern-triggered immunity in rice	The Magnaporthe oryzae effector AvrPiz-t targets the RING E3 ubiquitin ligase APIP6 to suppress pathogen-associated molecular pattern-triggered immunity in rice
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	vegetative	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	Vegetative development is also affected in the apo1
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	vegetative	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	Leaves were formed rapidly throughout the vegetative phase, indicating that APO1 is also involved in temporal regulation of leaf production
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	vegetative	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	These phenotypes suggest that the APO1 plays an important role in the temporal regulation of both vegetative and reproductive development
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	floral	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	We previously reported that the ABERRANT PANICLE ORGANIZATION1 (APO1) gene, encoding an F-box-containing protein orthologous to Arabidopsis (Arabidopsis thaliana) UNUSUAL FLORAL ORGANS, suppresses precocious conversion of rachis branch meristems to spikelets to ensure generation of certain number of spikelets
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield	Positional cloning of the gene revealed that SCM2 was identical to ABERRANT PANICLE ORGANIZATION1 (APO1), a gene previously reported to control panicle structure
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield	Although SCM2 is a gain-of-function mutant of APO1, it does not have the negative effects reported for APO1 overexpression mutants, such as decreased panicle number and abnormal spikelet morphology
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	floral	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	In addition, APO1 is associated with the regulation of the plastchron, floral organ identity, and floral determinacy
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	floral	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Phenotypic analyses of apo1 and floral homeotic double mutants demonstrate that APO1 positively regulates class-C floral homeotic genes, but not class-B genes
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	floral	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Molecular studies revealed that APO1 encodes an F-box protein, an ortholog of Arabidopsis UNUSUAL FLORAL ORGAN (UFO), which is a positive regulator of class-B genes
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	floral	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	Further analysis indicated that APO2/RFL and APO1, the rice ortholog of Arabidopsis UNUSUAL FLORAL ORGANS, act cooperatively to control inflorescence and flower development
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	floral	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	growth	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	This alteration in growth rate is opposite to what is observed with the apo1 mutants that have a smaller inflorescence meristem
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	However, in apo1, the main-axis meristem was converted to a spikelet meristem after producing a small number of branch primordia
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	In addition, the branch meristems in apo1 became spikelet meristems earlier than in wild type
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	Therefore, in the inflorescence, the apo1 mutation caused the precocious conversion of the meristem identity
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	In the apo1 flower, lodicules were increased at the expense of stamens, and carpels were formed indeterminately by the loss of meristem determinacy
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Characterization of rice aberrant panicle organization 1 (apo1) mutants revealed that APO1 positively controls spikelet number by suppressing the precocious conversion of inflorescence meristems to spikelet meristems
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	floral	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	We report a recessive mutation of rice, aberrant panicle organization 1 (apo1), which severely affects inflorescence architecture, floral organ identity, and leaf production rate
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	We report a recessive mutation of rice, aberrant panicle organization 1 (apo1), which severely affects inflorescence architecture, floral organ identity, and leaf production rate
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet meristem	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Characterization of rice aberrant panicle organization 1 (apo1) mutants revealed that APO1 positively controls spikelet number by suppressing the precocious conversion of inflorescence meristems to spikelet meristems
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	Further analysis indicated that APO2/RFL and APO1, the rice ortholog of Arabidopsis UNUSUAL FLORAL ORGANS, act cooperatively to control inflorescence and flower development
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	flower	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	In the apo1 flower, lodicules were increased at the expense of stamens, and carpels were formed indeterminately by the loss of meristem determinacy
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	reproductive	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	In the apo1-D dominant alleles, the inflorescence meristem starts to increase in size more vigorously than the wild type when switching to the reproductive development phase
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Characterization of rice aberrant panicle organization 1 (apo1) mutants revealed that APO1 positively controls spikelet number by suppressing the precocious conversion of inflorescence meristems to spikelet meristems
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	vascular bundle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	APO1 expression occurred not only in developing panicles but also in the developing vascular bundle systems
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	vascular bundle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	It suggests that APO1 enhances the formation of vascular bundle systems which, consequently, promote carbohydrate translocation to panicles
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	vascular bundle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	The HI1 allele is suggested to regulate the amount of APO1 expression, and thereby control the development of vascular bundle systems
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	culm	New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield	In this study, using chromosome segment substitution lines, we identified an effective quantitative trait loci (QTL) for culm strength, which was designated STRONG CULM2 (SCM2)
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	culm	New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield	A near-isogenic line carrying SCM2 showed enhanced culm strength and increased spikelet number because of the pleiotropic effects of the gene
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	We previously reported that the ABERRANT PANICLE ORGANIZATION1 (APO1) gene, encoding an F-box-containing protein orthologous to Arabidopsis (Arabidopsis thaliana) UNUSUAL FLORAL ORGANS, suppresses precocious conversion of rachis branch meristems to spikelets to ensure generation of certain number of spikelets
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	In the apo1-D dominant alleles, the inflorescence meristem starts to increase in size more vigorously than the wild type when switching to the reproductive development phase
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	This alteration in growth rate is opposite to what is observed with the apo1 mutants that have a smaller inflorescence meristem
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	meristem	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	Collectively, these results suggest that the level of APO1 activity regulates the inflorescence form through control of cell proliferation in the meristem
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	We previously reported that the ABERRANT PANICLE ORGANIZATION1 (APO1) gene, encoding an F-box-containing protein orthologous to Arabidopsis (Arabidopsis thaliana) UNUSUAL FLORAL ORGANS, suppresses precocious conversion of rachis branch meristems to spikelets to ensure generation of certain number of spikelets
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	flower	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	As the mutant inflorescences and flowers differed considerably between apo1 and ufo, the functions of APO1 and UFO appear to have diverged during evolution
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grains per panicle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	Habataki-genotype segregated reciprocal recombinant lines for the APO1 locus increased both the number of PRB (12-13%) and the number of grains per panicle (9-12%), which increased the grain yield per plant (5-7%)
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grains per panicle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	The PRB1 allele, which includes the APO1 open reading frame (ORF) and the proximal promoter region, controlled only the number of PRB but not the number of grains per panicle
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	We previously reported that the ABERRANT PANICLE ORGANIZATION1 (APO1) gene, encoding an F-box-containing protein orthologous to Arabidopsis (Arabidopsis thaliana) UNUSUAL FLORAL ORGANS, suppresses precocious conversion of rachis branch meristems to spikelets to ensure generation of certain number of spikelets
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	Here, we identified four dominant mutants producing an increased number of spikelets and found that they are gain-of-function alleles of APO1
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	The APO1 expression levels are elevated in all four mutants, suggesting that an increase of APO1 activity caused the delay in the program shift to spikelet formation
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet	New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield	A near-isogenic line carrying SCM2 showed enhanced culm strength and increased spikelet number because of the pleiotropic effects of the gene
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet	New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield	Although SCM2 is a gain-of-function mutant of APO1, it does not have the negative effects reported for APO1 overexpression mutants, such as decreased panicle number and abnormal spikelet morphology
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	stamen	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	In the apo1 flower, lodicules were increased at the expense of stamens, and carpels were formed indeterminately by the loss of meristem determinacy
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	We report a recessive mutation of rice, aberrant panicle organization 1 (apo1), which severely affects inflorescence architecture, floral organ identity, and leaf production rate
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	Therefore, in the inflorescence, the apo1 mutation caused the precocious conversion of the meristem identity
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	leaf	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	architecture	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	We report a recessive mutation of rice, aberrant panicle organization 1 (apo1), which severely affects inflorescence architecture, floral organ identity, and leaf production rate
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet meristem	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	However, in apo1, the main-axis meristem was converted to a spikelet meristem after producing a small number of branch primordia
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet meristem	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	In addition, the branch meristems in apo1 became spikelet meristems earlier than in wild type
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence architecture	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	We report a recessive mutation of rice, aberrant panicle organization 1 (apo1), which severely affects inflorescence architecture, floral organ identity, and leaf production rate
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	leaf	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	We report a recessive mutation of rice, aberrant panicle organization 1 (apo1), which severely affects inflorescence architecture, floral organ identity, and leaf production rate
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	leaf	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	Leaves were formed rapidly throughout the vegetative phase, indicating that APO1 is also involved in temporal regulation of leaf production
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet number	New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield	A near-isogenic line carrying SCM2 showed enhanced culm strength and increased spikelet number because of the pleiotropic effects of the gene
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	In the apo1-D dominant alleles, the inflorescence meristem starts to increase in size more vigorously than the wild type when switching to the reproductive development phase
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	This alteration in growth rate is opposite to what is observed with the apo1 mutants that have a smaller inflorescence meristem
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem	Collectively, these results suggest that the level of APO1 activity regulates the inflorescence form through control of cell proliferation in the meristem
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	The resultant gene was ABERRANT PANICLE ORGANIZATION 1 (APO1)
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	Habataki-genotype segregated reciprocal recombinant lines for the APO1 locus increased both the number of PRB (12-13%) and the number of grains per panicle (9-12%), which increased the grain yield per plant (5-7%)
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	The PRB1 allele, which includes the APO1 open reading frame (ORF) and the proximal promoter region, controlled only the number of PRB but not the number of grains per panicle
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	APO1 expression occurred not only in developing panicles but also in the developing vascular bundle systems
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	It suggests that APO1 enhances the formation of vascular bundle systems which, consequently, promote carbohydrate translocation to panicles
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	floral meristem	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	reproductive	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	These phenotypes suggest that the APO1 plays an important role in the temporal regulation of both vegetative and reproductive development
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	flower	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	Further analysis indicated that APO2/RFL and APO1, the rice ortholog of Arabidopsis UNUSUAL FLORAL ORGANS, act cooperatively to control inflorescence and flower development
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grain yield	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	Habataki-genotype segregated reciprocal recombinant lines for the APO1 locus increased both the number of PRB (12-13%) and the number of grains per panicle (9-12%), which increased the grain yield per plant (5-7%)
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grain	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	Habataki-genotype segregated reciprocal recombinant lines for the APO1 locus increased both the number of PRB (12-13%) and the number of grains per panicle (9-12%), which increased the grain yield per plant (5-7%)
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grain	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	The PRB1 allele, which includes the APO1 open reading frame (ORF) and the proximal promoter region, controlled only the number of PRB but not the number of grains per panicle
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	yield	A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice	Habataki-genotype segregated reciprocal recombinant lines for the APO1 locus increased both the number of PRB (12-13%) and the number of grains per panicle (9-12%), which increased the grain yield per plant (5-7%)
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Characterization of rice aberrant panicle organization 1 (apo1) mutants revealed that APO1 positively controls spikelet number by suppressing the precocious conversion of inflorescence meristems to spikelet meristems
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Overexpression of APO1 caused an increase in inflorescence branches and spikelets
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	inflorescence	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	As the mutant inflorescences and flowers differed considerably between apo1 and ufo, the functions of APO1 and UFO appear to have diverged during evolution
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	However, in apo1, the main-axis meristem was converted to a spikelet meristem after producing a small number of branch primordia
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice	In addition, the branch meristems in apo1 became spikelet meristems earlier than in wild type
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Characterization of rice aberrant panicle organization 1 (apo1) mutants revealed that APO1 positively controls spikelet number by suppressing the precocious conversion of inflorescence meristems to spikelet meristems
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Overexpression of APO1 caused an increase in inflorescence branches and spikelets
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	spikelet number	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Characterization of rice aberrant panicle organization 1 (apo1) mutants revealed that APO1 positively controls spikelet number by suppressing the precocious conversion of inflorescence meristems to spikelet meristems
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	leaf	Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.	These data indicate that ozone-induced grain yield loss in Habataki is caused by a reduction in the APO1 transcript level through an increase in the levels of phytohormones that reduce leaf damage
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grain	Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.	The Habataki allele of the APO1 locus in a near-isogenic line also resulted in grain yield loss upon ozone exposure, suggesting APO1 involvement in ozone-induced yield loss
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grain	Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.	These data indicate that ozone-induced grain yield loss in Habataki is caused by a reduction in the APO1 transcript level through an increase in the levels of phytohormones that reduce leaf damage
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grain yield	Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.	The Habataki allele of the APO1 locus in a near-isogenic line also resulted in grain yield loss upon ozone exposure, suggesting APO1 involvement in ozone-induced yield loss
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grain yield	Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.	These data indicate that ozone-induced grain yield loss in Habataki is caused by a reduction in the APO1 transcript level through an increase in the levels of phytohormones that reduce leaf damage
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	yield	Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.	The Habataki allele of the APO1 locus in a near-isogenic line also resulted in grain yield loss upon ozone exposure, suggesting APO1 involvement in ozone-induced yield loss
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	yield	Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.	These data indicate that ozone-induced grain yield loss in Habataki is caused by a reduction in the APO1 transcript level through an increase in the levels of phytohormones that reduce leaf damage
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grain	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	grain number	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
APO1|OsAPO1|SCM2	Os06g0665400	LOC_Os06g45460	panicle size	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
APX9	Os09g0538600	LOC_Os09g36750	development	Natural variation in rice ascorbate peroxidase gene APX9 is associated with a yield-enhancing QTL cluster.	Our findings demonstrate that APX9 acts as a major regulator of plant development by controlling a valuable suite of agronomically important traits in rice
APX9	Os09g0538600	LOC_Os09g36750	plant development	Natural variation in rice ascorbate peroxidase gene APX9 is associated with a yield-enhancing QTL cluster.	Our findings demonstrate that APX9 acts as a major regulator of plant development by controlling a valuable suite of agronomically important traits in rice
ARAG1	Os02g0657000	LOC_Os02g43970	drought tolerance	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice
ARAG1	Os02g0657000	LOC_Os02g43970	inflorescence	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	KEY RESULTS: ARAG1 was expressed in inflorescences, roots, immature embryos and germinating seeds, but not in coleoptiles, leaves or mature embryos
ARAG1	Os02g0657000	LOC_Os02g43970	ABA	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	ARAG1 knockdown line was hypersensitive to ABA application during seed germination and seedling growth
ARAG1	Os02g0657000	LOC_Os02g43970	ABA	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	CONCLUSIONS: These results indicate that ARAG1 was involved in the ABA signalling and stress responsive pathways
ARAG1	Os02g0657000	LOC_Os02g43970	root	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	KEY RESULTS: ARAG1 was expressed in inflorescences, roots, immature embryos and germinating seeds, but not in coleoptiles, leaves or mature embryos
ARAG1	Os02g0657000	LOC_Os02g43970	growth	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	ARAG1 knockdown line was hypersensitive to ABA application during seed germination and seedling growth
ARAG1	Os02g0657000	LOC_Os02g43970	seed germination	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	ARAG1 knockdown line was hypersensitive to ABA application during seed germination and seedling growth
ARAG1	Os02g0657000	LOC_Os02g43970	seed germination	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice
ARAG1	Os02g0657000	LOC_Os02g43970	drought	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	Knockdown of ARAG1 weakened tolerance of the transgenic seedlings to drought stress, while over-expression of it increased the tolerance slightly
ARAG1	Os02g0657000	LOC_Os02g43970	drought	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice
ARAG1	Os02g0657000	LOC_Os02g43970	seed	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	KEY RESULTS: ARAG1 was expressed in inflorescences, roots, immature embryos and germinating seeds, but not in coleoptiles, leaves or mature embryos
ARAG1	Os02g0657000	LOC_Os02g43970	seed	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	ARAG1 knockdown line was hypersensitive to ABA application during seed germination and seedling growth
ARAG1	Os02g0657000	LOC_Os02g43970	seed	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	Knockdown of ARAG1 weakened tolerance of the transgenic seedlings to drought stress, while over-expression of it increased the tolerance slightly
ARAG1	Os02g0657000	LOC_Os02g43970	seed	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice
ARAG1	Os02g0657000	LOC_Os02g43970	seedling	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	ARAG1 knockdown line was hypersensitive to ABA application during seed germination and seedling growth
ARAG1	Os02g0657000	LOC_Os02g43970	seedling	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice	Knockdown of ARAG1 weakened tolerance of the transgenic seedlings to drought stress, while over-expression of it increased the tolerance slightly
ARE2	Os03g0340900	LOC_Os03g22160	nitrogen	Regulation of nitrogen starvation responses by the alarmone (p)ppGpp in rice.	 Here, we show that ARE2 (for ABC1 REPRESSOR2) is a key regulator of nitrogen starvation responses in rice
ARE2	Os03g0340900	LOC_Os03g22160	nitrogen	Regulation of nitrogen starvation responses by the alarmone (p)ppGpp in rice.	 The are2 mutations partially rescue the nitrogen-deficient phenotype of abc1 and the are2 mutants show enhanced tolerance to nitrogen deficiency, suggesting that ARE2 genetically interacts with ABC1/Fd-GOGAT
ARE2	Os03g0340900	LOC_Os03g22160	tolerance	Regulation of nitrogen starvation responses by the alarmone (p)ppGpp in rice.	 The are2 mutations partially rescue the nitrogen-deficient phenotype of abc1 and the are2 mutants show enhanced tolerance to nitrogen deficiency, suggesting that ARE2 genetically interacts with ABC1/Fd-GOGAT
ARE2	Os03g0340900	LOC_Os03g22160	stress	Regulation of nitrogen starvation responses by the alarmone (p)ppGpp in rice.	 ARE2 encodes a chloroplast-localized RelA/SpoT homolog protein that catalyzes the hydrolysis of guanosine pentaphosphate or tetraphosphate (p)ppGpp, an alarmone regulating the stringent response in bacteria under nutritional stress conditions
ARF6	Os02g0164900	LOC_Os02g06910	flower opening	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
ARF6	Os02g0164900	LOC_Os02g06910	stigma size	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
ARF8	Os02g0628600	LOC_Os02g41800	iaa	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'	It was also shown that expression of OsGH3-2, an rice IAA-conjugating enzyme, was positively regulated by ARF8
ARF8	Os02g0628600	LOC_Os02g41800	auxin	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'	MicroRNA167 (miR167) was shown to cleave auxin responsive factor 8 (ARF8) mRNA in cultured rice cells
ARF8	Os02g0628600	LOC_Os02g41800	auxin	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'	When cells grew in auxin-free medium, miR167 level decreased, resulting in an increase in the level of ARF8 mRNA
ARF8	Os02g0628600	LOC_Os02g41800	auxin	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'	This study provides an evidence in which the exogeneous auxin signal is transduced to OsGH3-2 through miR167 and ARF8 in sequence
ARF8	Os02g0628600	LOC_Os02g41800	auxin	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'	This proposed auxin signal transduction pathway, auxin-miR167-ARF8-OsGH3-2, could be, in conjunction with the other microRNA-mediated auxin signals, an important one for responding to exogeneous auxin and for determining the cellular free auxin level which guides appropriate auxin responses
ARF8	Os02g0628600	LOC_Os02g41800	auxin	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'
ARF8	Os02g0628600	LOC_Os02g41800	leaf	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
ARF8	Os02g0628600	LOC_Os02g41800	resistance	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 miR160a enhances disease resistance partially by suppressing ARF8, as mutation of ARF8 in MIM160 background partially restores the compromised resistance resulting from MIM160
ARF8	Os02g0628600	LOC_Os02g41800	resistance	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
ARF8	Os02g0628600	LOC_Os02g41800	disease	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 miR160a enhances disease resistance partially by suppressing ARF8, as mutation of ARF8 in MIM160 background partially restores the compromised resistance resulting from MIM160
ARF8	Os02g0628600	LOC_Os02g41800	disease resistance	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 miR160a enhances disease resistance partially by suppressing ARF8, as mutation of ARF8 in MIM160 background partially restores the compromised resistance resulting from MIM160
ARF8	Os02g0628600	LOC_Os02g41800	blight	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
ARF8	Os02g0628600	LOC_Os02g41800	blast	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
ARF8	Os02g0628600	LOC_Os02g41800	immunity	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 ARF8 protein binds directly to the promoter and suppresses the expression of WRKY45, which acts as a positive regulator of rice immunity
ARF8	Os02g0628600	LOC_Os02g41800	blast resistance	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
ARG1	Os05g0400600	LOC_Os05g33230	photosynthesis	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	<U+2022> Measurements of metal contents, metal transport, physiological and transcriptome changes revealed that ARG1 modulates cobalt (Co) and nickel (Ni) transport and homeostasis in chloroplasts to prevent excessive Co and Ni from competing with essential metal cofactors in chlorophyll and metal binding proteins acting in photosynthesis
ARG1	Os05g0400600	LOC_Os05g33230	homeostasis	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.
ARG1	Os05g0400600	LOC_Os05g33230	homeostasis	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	<U+2022> Measurements of metal contents, metal transport, physiological and transcriptome changes revealed that ARG1 modulates cobalt (Co) and nickel (Ni) transport and homeostasis in chloroplasts to prevent excessive Co and Ni from competing with essential metal cofactors in chlorophyll and metal binding proteins acting in photosynthesis
ARG1	Os05g0400600	LOC_Os05g33230	homeostasis	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	<U+2022> Our findings link the function of the ARG1 transporter to photosynthesis, and potentially facilitate breeding of rice cultivars with improved Co homeostasis and consequently improved photosynthetic performance
ARG1	Os05g0400600	LOC_Os05g33230	transporter	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.
ARG1	Os05g0400600	LOC_Os05g33230	transporter	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	ARG1 encodes an evolutionarily conserved protein belonging to the ATP-binding cassette (ABC) transporter family
ARG1	Os05g0400600	LOC_Os05g33230	transporter	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	<U+2022> Our findings link the function of the ARG1 transporter to photosynthesis, and potentially facilitate breeding of rice cultivars with improved Co homeostasis and consequently improved photosynthetic performance
ARG1	Os05g0400600	LOC_Os05g33230	breeding	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	<U+2022> Our findings link the function of the ARG1 transporter to photosynthesis, and potentially facilitate breeding of rice cultivars with improved Co homeostasis and consequently improved photosynthetic performance
ARG1	Os05g0400600	LOC_Os05g33230	ABC transporter	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.
ARG1	Os05g0400600	LOC_Os05g33230	metal transport	A rice chloroplast-localized ABC transporter ARG1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	<U+2022> Measurements of metal contents, metal transport, physiological and transcriptome changes revealed that ARG1 modulates cobalt (Co) and nickel (Ni) transport and homeostasis in chloroplasts to prevent excessive Co and Ni from competing with essential metal cofactors in chlorophyll and metal binding proteins acting in photosynthesis
ARK1	None	LOC_Os11g26140	root	A rice Serine/Threonine receptor-like kinase regulates arbuscular mycorrhizal symbiosis at the peri-arbuscular membrane.	Mutation of rice ARK1 causes a significant reduction in vesicles, the fungal storage structures, and a concomitant reduction in overall root colonization by the AM fungus Rhizophagus irregularis
ARK1	None	LOC_Os11g26140	development	A rice Serine/Threonine receptor-like kinase regulates arbuscular mycorrhizal symbiosis at the peri-arbuscular membrane.	Co-cultivation with wild-type plants restores vesicle and spore formation, suggesting ARK1 function is required for the completion of the fungal life-cycle, thereby defining a functional stage, post arbuscule development
ArPK	Os06g0693000	LOC_Os06g47780	root	A novel kinase subverts aluminium resistance by boosting ornithine decarboxylase-dependent putrescine biosynthesis.	 Al specifically and rapidly upregulated ODC1 expression and causes overaccumulation of putrescine (Put), whereas the ODC inhibitor difluoromethylornithine reverted Al-sensitive phenotype of arpk, suggesting that overaccumulation of endogenous Put might be harmful for root growth, and that ArPK seems to act as an endogenous inhibitor of ODC1 action to maintain suitable endogenous Put level under Al treatment
ArPK	Os06g0693000	LOC_Os06g47780	resistance	A novel kinase subverts aluminium resistance by boosting ornithine decarboxylase-dependent putrescine biosynthesis.	 Overall, we identified ArPK and its putative repressive role in controlling a novel ODC-dependent Put biosynthesis pathway specifically affecting rice Al resistance, thus enriching the fundamental understanding of plant Al resistance
ArPK	Os06g0693000	LOC_Os06g47780	root growth	A novel kinase subverts aluminium resistance by boosting ornithine decarboxylase-dependent putrescine biosynthesis.	 Al specifically and rapidly upregulated ODC1 expression and causes overaccumulation of putrescine (Put), whereas the ODC inhibitor difluoromethylornithine reverted Al-sensitive phenotype of arpk, suggesting that overaccumulation of endogenous Put might be harmful for root growth, and that ArPK seems to act as an endogenous inhibitor of ODC1 action to maintain suitable endogenous Put level under Al treatment
ART1	Os12g0170400	LOC_Os12g07280	aluminum	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice
ART1	Os12g0170400	LOC_Os12g07280	root	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	ART1 is constitutively expressed in the root, and the expression level is not affected by Al treatment
ART1	Os12g0170400	LOC_Os12g07280	root	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	ART1 is localized in the nucleus of all root cells
ART1	Os12g0170400	LOC_Os12g07280	Al tolerance	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Furthermore, the OsFRDL4 expression was regulated by ART1, a C2H2-type zinc finger transcription factor for Al tolerance
ART1	Os12g0170400	LOC_Os12g07280	aluminum	Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice	Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice
ART1	Os12g0170400	LOC_Os12g07280	Al tolerance	Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice	Recent identification of a transcription factor AL RESISTANCE TRANSCRIPTION FACTOR1 (ART1) revealed that this high Al tolerance in rice is achieved by multiple genes involved in detoxification of Al at different cellular levels
ART1	Os12g0170400	LOC_Os12g07280	Al tolerance	Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice	We used the promoter region of SENSITIVE TO AL RHIZOTOXICITY1, an Al tolerance gene in the downstream of ART1
ART1	Os12g0170400	LOC_Os12g07280	transcription factor	Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice	Recent identification of a transcription factor AL RESISTANCE TRANSCRIPTION FACTOR1 (ART1) revealed that this high Al tolerance in rice is achieved by multiple genes involved in detoxification of Al at different cellular levels
ART1	Os12g0170400	LOC_Os12g07280	transcription factor	Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice	ART1 is a C2H2-type zinc-finger transcription factor and regulates the expression of 31 genes in the downstream
ART1	Os12g0170400	LOC_Os12g07280	transcription factor	Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice	Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice
ART1	Os12g0170400	LOC_Os12g07280	root	Plasma membrane-localized transporter for aluminum in rice	Expression of Nrat1 is up-regulated by Al in the roots and regulated by a C2H2 zinc finger transcription factor (ART1)
ART1	Os12g0170400	LOC_Os12g07280	transcription factor	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	Here, we report a C2H2-type zinc finger transcription factor ART1 (for Al resistance transcription factor 1), which specifically regulates the expression of genes related to Al tolerance in rice (Oryza sativa)
ART1	Os12g0170400	LOC_Os12g07280	transcription factor	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice
ART1	Os12g0170400	LOC_Os12g07280	Al tolerance	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	Here, we report a C2H2-type zinc finger transcription factor ART1 (for Al resistance transcription factor 1), which specifically regulates the expression of genes related to Al tolerance in rice (Oryza sativa)
ART1	Os12g0170400	LOC_Os12g07280	Al tolerance	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	A yeast one-hybrid assay showed that ART1 has a transcriptional activation potential and interacts with the promoter region of STAR1, an important factor in rice Al tolerance
ART1	Os12g0170400	LOC_Os12g07280	Al tolerance	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	Microarray analysis revealed 31 downstream transcripts regulated by ART1, including STAR1 and 2 and a couple of homologs of Al tolerance genes in other plants
ART1	Os12g0170400	LOC_Os12g07280	transcription factor	Plasma membrane-localized transporter for aluminum in rice	Expression of Nrat1 is up-regulated by Al in the roots and regulated by a C2H2 zinc finger transcription factor (ART1)
ART1	Os12g0170400	LOC_Os12g07280	transcription factor	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Furthermore, the OsFRDL4 expression was regulated by ART1, a C2H2-type zinc finger transcription factor for Al tolerance
ART1	Os12g0170400	LOC_Os12g07280	resistance	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.
ART1	Os12g0170400	LOC_Os12g07280	resistance	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.	 Furthermore, transient dual-luciferase assay showed that ART1 directly inhibited the expression of OsMYB30, and in turn repressed Os4CL5-dependent 4-coumaric acid accumulation, hence reducing the Al-binding capacity of cell wall and enhancing Al resistance
ART1	Os12g0170400	LOC_Os12g07280	resistance	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.	 We concluded that ART1 confers Put-promoted Al resistance via repression of OsMYB30-regulated modification of cell wall properties in rice
ART1	Os12g0170400	LOC_Os12g07280	aluminum	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.
ART1	Os12g0170400	LOC_Os12g07280	cell wall	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.
ART1	Os12g0170400	LOC_Os12g07280	cell wall	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.	 Furthermore, transient dual-luciferase assay showed that ART1 directly inhibited the expression of OsMYB30, and in turn repressed Os4CL5-dependent 4-coumaric acid accumulation, hence reducing the Al-binding capacity of cell wall and enhancing Al resistance
ART1	Os12g0170400	LOC_Os12g07280	cell wall	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.	 We concluded that ART1 confers Put-promoted Al resistance via repression of OsMYB30-regulated modification of cell wall properties in rice
ART2	Os04g0165200	LOC_Os04g08290	tolerance	Functional characterization of an aluminum (Al)-inducible transcription factor, ART2, revealed a different pathway for Al tolerance in rice.	Expression profile analysis by RNA-sequencing showed that ART2 was not involved in activation of genes regulated by ART1; however, four genes seems to be regulated by ART2, which are implicated in Al tolerance
ART2	Os04g0165200	LOC_Os04g08290	tolerance	Functional characterization of an aluminum (Al)-inducible transcription factor, ART2, revealed a different pathway for Al tolerance in rice.	These results indicate that ART1 and ART2 regulate different pathways leading to Al tolerance, and ATR2 plays a supplementary role in Al tolerance in rice
ART2	Os04g0165200	LOC_Os04g08290	Al tolerance	Functional characterization of an aluminum (Al)-inducible transcription factor, ART2, revealed a different pathway for Al tolerance in rice.	Expression profile analysis by RNA-sequencing showed that ART2 was not involved in activation of genes regulated by ART1; however, four genes seems to be regulated by ART2, which are implicated in Al tolerance
ART2	Os04g0165200	LOC_Os04g08290	Al tolerance	Functional characterization of an aluminum (Al)-inducible transcription factor, ART2, revealed a different pathway for Al tolerance in rice.	These results indicate that ART1 and ART2 regulate different pathways leading to Al tolerance, and ATR2 plays a supplementary role in Al tolerance in rice
ART2	Os04g0165200	LOC_Os04g08290	nucleus	Functional characterization of an aluminum (Al)-inducible transcription factor, ART2, revealed a different pathway for Al tolerance in rice.	ART2 was localized to the nucleus and showed a transcriptional activation potential in yeast
ASCAB9-A|CP26|Lhcb5	Os11g0242800	LOC_Os11g13890	resistance	Phosphorylation-guarded light-harvesting complex II contributes to broad-spectrum blast resistance in rice.	LHCB5 phosphorylation enhances broad-spectrum resistance of rice to M
ASCAB9-A|CP26|Lhcb5	Os11g0242800	LOC_Os11g13890	resistance	Phosphorylation-guarded light-harvesting complex II contributes to broad-spectrum blast resistance in rice.	We also show that LHCB5 phosphorylation-induced resistance is inheritable
ASCAB9-A|CP26|Lhcb5	Os11g0242800	LOC_Os11g13890	blast	Phosphorylation-guarded light-harvesting complex II contributes to broad-spectrum blast resistance in rice.	Here, we report that the light-harvesting complex II protein, LHCB5, from rice is subject to light-induced phosphorylation during infection by the rice blast fungus Magnaporthe oryzae We demonstrate that single-nucleotide polymorphisms (SNPs) in the LHCB5 promoter control the expression of LHCB5, which in turn correlates with the phosphorylation of LHCB5
ASCAB9-A|CP26|Lhcb5	Os11g0242800	LOC_Os11g13890	magnaporthe oryzae	Phosphorylation-guarded light-harvesting complex II contributes to broad-spectrum blast resistance in rice.	Here, we report that the light-harvesting complex II protein, LHCB5, from rice is subject to light-induced phosphorylation during infection by the rice blast fungus Magnaporthe oryzae We demonstrate that single-nucleotide polymorphisms (SNPs) in the LHCB5 promoter control the expression of LHCB5, which in turn correlates with the phosphorylation of LHCB5
ASL1	Os01g0678600	LOC_Os01g48690	chloroplast	Disruption of the rice plastid ribosomal protein s20 leads to chloroplast developmental defects and seedling lethality	Map-based cloning revealed that ASL1 encodes PRP S20 (PRPS20), which localizes to the chloroplast
ASL1	Os01g0678600	LOC_Os01g48690	chloroplast	Disruption of the rice plastid ribosomal protein s20 leads to chloroplast developmental defects and seedling lethality	The transcript levels of nuclear genes for Chl biosynthesis and chloroplast development were strongly affected in asl1 mutants; transcripts of some plastid genes for photosynthesis were undetectable
ASL1	Os01g0678600	LOC_Os01g48690	photosynthesis	Disruption of the rice plastid ribosomal protein s20 leads to chloroplast developmental defects and seedling lethality	The transcript levels of nuclear genes for Chl biosynthesis and chloroplast development were strongly affected in asl1 mutants; transcripts of some plastid genes for photosynthesis were undetectable
ASL1	Os01g0678600	LOC_Os01g48690	seedling	Disruption of the rice plastid ribosomal protein s20 leads to chloroplast developmental defects and seedling lethality	This study identifies the first rice PRP mutant, asl1 (albino seedling lethality1), which exhibits an albino lethal phenotype at the seedling stage
ASL1	Os01g0678600	LOC_Os01g48690	seedling	Disruption of the rice plastid ribosomal protein s20 leads to chloroplast developmental defects and seedling lethality	ASL1 showed tissue-specific expression, as it was highly expressed in plumule and young seedlings but expressed at much lower levels in other tissues
ASL2	Os02g0259600	LOC_Os02g15900	chloroplast developmental	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death
ASL2	Os02g0259600	LOC_Os02g15900	seedling death	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death
ASL2	Os02g0259600	LOC_Os02g15900	seedling	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death
ASL2	Os02g0259600	LOC_Os02g15900	plumule	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death	ASL2 was expressed at a higher level in the plumule and leaves, implying its tissue-specific expression.
ASL2	Os02g0259600	LOC_Os02g15900	leaf	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death	ASL2 was expressed at a higher level in the plumule and leaves, implying its tissue-specific expression.
ASL2	Os02g0259600	LOC_Os02g15900	Chl biosynthesis	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death	The transcript levels of the majority of genes for Chl biosynthesis, photosynthesis and chloroplast development were strongly affected in asl2 mutants
ASL2	Os02g0259600	LOC_Os02g15900	photosynthesis	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death	The transcript levels of the majority of genes for Chl biosynthesis, photosynthesis and chloroplast development were strongly affected in asl2 mutants
ASPR1|OsTRP1	Os01g0254100	LOC_Os01g15020	TPR proteins	MORE FLORET1 Encodes a MYB Transcription Factor That Regulates Spikelet Development in Rice	Rice has three TPR proteins, namely OsTRP1/Os01g15020, OsTRP2/ABERRANT SPIKELET AND PANICLE1 (OsTRP2/ASP1), and OsTRP3/Os03g14980.
ASPR2|OsTPR2	Os03g0254700	LOC_Os03g14980	zinc	Structural basis for recognition of diverse transcriptional repressors by the TOPLESS family of corepressors.	The OsTPR2 TPD adopts a new fold of nine helices, followed by a zinc finger, which are arranged into a disc-like tetramer
Asr1	Os01g0959100	LOC_Os01g72900	salt tolerance	Involvement of ASR genes in aluminium tolerance mechanisms in rice	Stable expression of tomato ASR1 in tobacco and potato has been shown to increase salt tolerance and influence glucose metabolism, respectively.
Asr3|OsASR3	Os02g0543000	LOC_Os02g33820	abiotic stress	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	Coexpression analysis of OsASR1 and OsASR3 and a comparison of the cis-acting elements upstream of OsASR1 and OsASR3 suggested that their expression is regulated in common by abiotic stresses but differently regulated by hormone and sugar signals
Asr3|OsASR3	Os02g0543000	LOC_Os02g33820	abiotic stress	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities
Asr3|OsASR3	Os02g0543000	LOC_Os02g33820	cold stress	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	Our data also showed that the overexpression of either OsASR1 or OsASR3 in transgenic rice plants increased their tolerance to drought and cold stress
Asr3|OsASR3	Os02g0543000	LOC_Os02g33820	root	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	OsASR1 and OsASR3 are the most abundant and are found in most tissues; they are enriched in the leaves and roots, respectively
Asr3|OsASR3	Os02g0543000	LOC_Os02g33820	root	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	, OsASR1 in leaves and OsASR3 in roots)
Asr3|OsASR3	Os02g0543000	LOC_Os02g33820	drought	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	The expression of both OsASR1 and OsASR3 was induced by drought stress, which is a major regulator of the expression of all ASR genes in rice
Asr3|OsASR3	Os02g0543000	LOC_Os02g33820	drought	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	Our data also showed that the overexpression of either OsASR1 or OsASR3 in transgenic rice plants increased their tolerance to drought and cold stress
Asr3|OsASR3	Os02g0543000	LOC_Os02g33820	abiotic stress	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	Coexpression analysis of OsASR1 and OsASR3 and a comparison of the cis-acting elements upstream of OsASR1 and OsASR3 suggested that their expression is regulated in common by abiotic stresses but differently regulated by hormone and sugar signals
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	vegetative	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants	Low-temperature stress increased mRNA levels of OsAsr1 in both vegetative and reproductive organs
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	root	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	Recently, we focused on ASR (Abscisic acid, Stress and Ripening) gene expression analyses and observed increased ASR5 transcript levels in roots and shoots in response to Al
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	palea	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants	In situ analysis showed that OsAsr1 transcript was preferentially accumulated in the leaf mesophyll tissues and parenchyma cells of the palea and lemma
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	growth	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths	Since this protein is regulated not only by abscisic acid but also by GA(3), these results indicate that ASR5 might be involved in plant growth in addition to stress in the basal regions of leaf sheaths
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	transcription factor	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	Because it is well known that Al induces photosynthetic dysfunction, here we discuss the hypothesis that ASR5 might be sequestered in the chloroplasts as an inactive transcription factor that could be released to the nucleus in response to Al to regulate genes related to photosynthesis
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	photosynthesis	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	A proteomic approach showed that ASR5 silencing affected several proteins related to photosynthesis in RNAi rice shoots
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	photosynthesis	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	Because it is well known that Al induces photosynthetic dysfunction, here we discuss the hypothesis that ASR5 might be sequestered in the chloroplasts as an inactive transcription factor that could be released to the nucleus in response to Al to regulate genes related to photosynthesis
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	photosynthesis	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	temperature	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants	Low-temperature stress increased mRNA levels of OsAsr1 in both vegetative and reproductive organs
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	temperature	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants	Taken together, we suggest that OsAsr1 gene play an important role during temperature stress, and that this gene can be used for generating plants with enhanced cold tolerance
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	reproductive	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants	Low-temperature stress increased mRNA levels of OsAsr1 in both vegetative and reproductive organs
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	shoot	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	Recently, we focused on ASR (Abscisic acid, Stress and Ripening) gene expression analyses and observed increased ASR5 transcript levels in roots and shoots in response to Al
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	shoot	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	A proteomic approach showed that ASR5 silencing affected several proteins related to photosynthesis in RNAi rice shoots
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	aluminum	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	drought	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	The expression of both OsASR1 and OsASR3 was induced by drought stress, which is a major regulator of the expression of all ASR genes in rice
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	drought	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	Our data also showed that the overexpression of either OsASR1 or OsASR3 in transgenic rice plants increased their tolerance to drought and cold stress
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	sheath	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths	ASR5 out of these six proteins was significantly regulated by GA(3) at the protein level but not at the mRNA level in the basal region of leaf sheaths
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	sheath	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths	Since this protein is regulated not only by abscisic acid but also by GA(3), these results indicate that ASR5 might be involved in plant growth in addition to stress in the basal regions of leaf sheaths
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	sheath	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	gibberellin	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	cold stress	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	Our data also showed that the overexpression of either OsASR1 or OsASR3 in transgenic rice plants increased their tolerance to drought and cold stress
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	transcription factor	Involvement of ASR genes in aluminium tolerance mechanisms in rice	We suggest that the ASR5 protein acts as a transcription factor to regulate the expression of different genes that collectively protect rice cells from Al-induced stress responses
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	cold tolerance	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants	Taken together, we suggest that OsAsr1 gene play an important role during temperature stress, and that this gene can be used for generating plants with enhanced cold tolerance
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	cold tolerance	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	lemma	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants	In situ analysis showed that OsAsr1 transcript was preferentially accumulated in the leaf mesophyll tissues and parenchyma cells of the palea and lemma
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	root	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	OsASR1 and OsASR3 are the most abundant and are found in most tissues; they are enriched in the leaves and roots, respectively
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	root	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	, OsASR1 in leaves and OsASR3 in roots)
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	abiotic stress	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities	Coexpression analysis of OsASR1 and OsASR3 and a comparison of the cis-acting elements upstream of OsASR1 and OsASR3 suggested that their expression is regulated in common by abiotic stresses but differently regulated by hormone and sugar signals
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	leaf	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths	ASR5 out of these six proteins was significantly regulated by GA(3) at the protein level but not at the mRNA level in the basal region of leaf sheaths
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	leaf	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths	Since this protein is regulated not only by abscisic acid but also by GA(3), these results indicate that ASR5 might be involved in plant growth in addition to stress in the basal regions of leaf sheaths
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	leaf	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	chloroplast	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	Furthermore, an ASR5-GFP fusion in rice protoplasts revealed for the first time a chloroplast localization of this protein
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	chloroplast	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance	Because it is well known that Al induces photosynthetic dysfunction, here we discuss the hypothesis that ASR5 might be sequestered in the chloroplasts as an inactive transcription factor that could be released to the nucleus in response to Al to regulate genes related to photosynthesis
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	leaf	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants	In situ analysis showed that OsAsr1 transcript was preferentially accumulated in the leaf mesophyll tissues and parenchyma cells of the palea and lemma
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	seedlings	ASR5 is involved in the regulation of miRNA expression in rice.	This work describes the transcriptomic analysis by deep sequencing two libraries, comparing miRNA abundance from the roots of transgenic ASR5 knockdown rice seedlings with that of the roots of wild-type non-transformed rice seedlings
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	resistance	OsASR2 regulates the expression of a defense-related gene, Os2H16, by targeting the GT-1 cis-element.	Overexpression of OsASR2 enhanced the resistance against Xanthomonas oryzae pv
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	abiotic stress	OsASR2 regulates the expression of a defense-related gene, Os2H16, by targeting the GT-1 cis-element.	These results suggest that the interaction between OsASR2 and GT-1 plays an important role in the crosstalk of the response of rice to biotic and abiotic stresses
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	stress	OsASR2 regulates the expression of a defense-related gene, Os2H16, by targeting the GT-1 cis-element.	Additionally, the expression of OsASR2 was elevated by pathogens and osmotic stress challenges
ASR5|OsAsr1|OsASR2	Os11g0167800	LOC_Os11g06720	biotic stress	OsASR2 regulates the expression of a defense-related gene, Os2H16, by targeting the GT-1 cis-element.	These results suggest that the interaction between OsASR2 and GT-1 plays an important role in the crosstalk of the response of rice to biotic and abiotic stresses
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	transcription factor	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	OsASR6 is activated by auxin and, in turn, increases auxin responses and root auxin sensitivity, as observed by the increased expression of auxin-responsive genes, such as SAUR32 and PINOID, and the key auxin transcription factor, ARF5
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	xylem	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	xylem	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	Interestingly, OsASR6 expression led to alterations in the xylem structure, an increase in the xylem vessel size and altered lignification, which correlated with higher conductance
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	root	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	root	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	OsASR6 is activated by auxin and, in turn, increases auxin responses and root auxin sensitivity, as observed by the increased expression of auxin-responsive genes, such as SAUR32 and PINOID, and the key auxin transcription factor, ARF5
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	growth	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	growth	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	Ectopic expression of one of these genes, OsASR6 (ABA STRESS RIPENING6), had a remarkable effect on plant growth in Arabidopsis
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	auxin	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	auxin	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	OsASR6 is activated by auxin and, in turn, increases auxin responses and root auxin sensitivity, as observed by the increased expression of auxin-responsive genes, such as SAUR32 and PINOID, and the key auxin transcription factor, ARF5
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	seed	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	Transgenic OsASR6 over-expressing plants showed higher conductance, transpiration and photosynthesis rates, leading to an ˜30% higher seed yield compared with the control
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	photosynthesis	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	Transgenic OsASR6 over-expressing plants showed higher conductance, transpiration and photosynthesis rates, leading to an ˜30% higher seed yield compared with the control
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	yield	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	yield	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	Transgenic OsASR6 over-expressing plants showed higher conductance, transpiration and photosynthesis rates, leading to an ˜30% higher seed yield compared with the control
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	stress	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	Ectopic expression of one of these genes, OsASR6 (ABA STRESS RIPENING6), had a remarkable effect on plant growth in Arabidopsis
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	inflorescence	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	Transgenic lines over-expressing OsASR6 had larger leaves, taller inflorescence bolts and greater numbers of siliques and seeds
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	auxin response	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	OsASR6 is activated by auxin and, in turn, increases auxin responses and root auxin sensitivity, as observed by the increased expression of auxin-responsive genes, such as SAUR32 and PINOID, and the key auxin transcription factor, ARF5
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	plant growth	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.
Asr6|OsASR6	Os01g0963600	LOC_Os01g73250	plant growth	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	Ectopic expression of one of these genes, OsASR6 (ABA STRESS RIPENING6), had a remarkable effect on plant growth in Arabidopsis
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	Northern blot analysis revealed that salt-tolerant in each rice cultivar is correlated to the expression level of OsBADH1 mRNA
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	Moreover, these results suggest that the expression of OsBADH1 gene in response to salt stress could be magnified under high light conditions
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	Interestingly, the effect of salt stress on the expression of OsBADH1 gene was alleviated by CO2 enrichment
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt	Expression of Indica rice OsBADH1 gene under salinity stress in transgenic tobacco	We previously found that the expression of betaine aldehyde dehydrogenase 1 gene (OsBADH1), encoding a key enzyme for glycine betaine biosynthesis pathway, showed close correlation with salt tolerance of rice
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt	Expression of Indica rice OsBADH1 gene under salinity stress in transgenic tobacco	In this study, the expression of the OsBADH1 gene in transgenic tobacco was investigated in response to salt stress using a transgenic approach
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	drought	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	The expression studies showed that OsBADH1 can be induced by a variety of environmental factors such as salinity, drought, cold, heat, light intensity and CO2 concentration
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	drought	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	The results demonstrated that the OsBADH1 mRNA expression was up-regulated by salinity, drought, cold and high light intensity but down-regulated by CO2 enrichment and heat stress
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	drought	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	The primary response of OsBADH1 gene expression was induced within 24 h after salinity, cold or drought stress treatment
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salinity	Expression of Indica rice OsBADH1 gene under salinity stress in transgenic tobacco	Expression of Indica rice OsBADH1 gene under salinity stress in transgenic tobacco
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	temperature	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt	Genetic manipulation of Japonica rice using the OsBADH1 gene from Indica rice to improve salinity tolerance	Japonica rice (salt-sensitive) was genetically engineered to enhance salt tolerance by introducing the OsBADH1 gene from Indica rice (salt-tolerant), which is a GB accumulator
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salinity	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	The expression studies showed that OsBADH1 can be induced by a variety of environmental factors such as salinity, drought, cold, heat, light intensity and CO2 concentration
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salinity	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	The results demonstrated that the OsBADH1 mRNA expression was up-regulated by salinity, drought, cold and high light intensity but down-regulated by CO2 enrichment and heat stress
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salinity	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	The primary response of OsBADH1 gene expression was induced within 24 h after salinity, cold or drought stress treatment
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt stress	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	Moreover, these results suggest that the expression of OsBADH1 gene in response to salt stress could be magnified under high light conditions
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt stress	Expression of OsBADH1 gene in Indica rice (Oryza sativaL.) in correlation with salt, plasmolysis, temperature and light stresses	Interestingly, the effect of salt stress on the expression of OsBADH1 gene was alleviated by CO2 enrichment
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt tolerance	Expression of Indica rice OsBADH1 gene under salinity stress in transgenic tobacco	We previously found that the expression of betaine aldehyde dehydrogenase 1 gene (OsBADH1), encoding a key enzyme for glycine betaine biosynthesis pathway, showed close correlation with salt tolerance of rice
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salinity stress	Expression of Indica rice OsBADH1 gene under salinity stress in transgenic tobacco	Expression of Indica rice OsBADH1 gene under salinity stress in transgenic tobacco
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt tolerance	Genetic manipulation of Japonica rice using the OsBADH1 gene from Indica rice to improve salinity tolerance	Japonica rice (salt-sensitive) was genetically engineered to enhance salt tolerance by introducing the OsBADH1 gene from Indica rice (salt-tolerant), which is a GB accumulator
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salt stress	Expression of Indica rice OsBADH1 gene under salinity stress in transgenic tobacco	In this study, the expression of the OsBADH1 gene in transgenic tobacco was investigated in response to salt stress using a transgenic approach
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	salinity	Genetic manipulation of Japonica rice using the OsBADH1 gene from Indica rice to improve salinity tolerance	Genetic manipulation of Japonica rice using the OsBADH1 gene from Indica rice to improve salinity tolerance
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	submergence	OsBADH1 is possibly involved in acetaldehyde oxidation in rice plant peroxisomes	The accumulation of OsBADH1 mRNA decreases following submergence treatment, but quickly recovers after re-aeration
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	drought	RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa).	Transgenic rice lines downregulating OsBADH1 exhibited remarkably reduced tolerance to NaCl, drought and cold stresses
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	tolerance	RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa).	In this study, we demonstrated a pivotal role of OsBADH1 in stress tolerance without altering GB biosynthesis capacity, using the RNA interference (RNAi) technique
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	tolerance	RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa).	Transgenic rice lines downregulating OsBADH1 exhibited remarkably reduced tolerance to NaCl, drought and cold stresses
BAD1|OsBADH1	Os04g0464200	LOC_Os04g39020	stress	RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa).	In this study, we demonstrated a pivotal role of OsBADH1 in stress tolerance without altering GB biosynthesis capacity, using the RNA interference (RNAi) technique
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	oxidative	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	Heterologous OsTPX expression increased the ability of the transgenic yeast cells to adapt and recover from reactive oxygen species (ROS)-induced oxidative stresses, such as a reduction of cellular hydroperoxide levels in the presence of hydrogen peroxide and menadione, by improving redox homeostasis
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	oxidative	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	These results suggest that heterologous OsTPX expression increases acquired tolerance to ROS-induced oxidative stress by improving cellular redox homeostasis and improves fermentation capacity due to improved cell survival during fermentation, especially at a high temperature
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	temperature	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	Furthermore, high OsTPX expression improved the fermentation capacity of the yeast during glucose-based batch fermentation at a high temperature (40 degrees C) and at the general cultivation temperature (30 degrees C)
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	temperature	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	These results suggest that heterologous OsTPX expression increases acquired tolerance to ROS-induced oxidative stress by improving cellular redox homeostasis and improves fermentation capacity due to improved cell survival during fermentation, especially at a high temperature
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	seedling	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	In this study, a putative chloroplastic 2-Cys thioredoxin peroxidase (OsTPX) was identified by proteome analysis from leaf tissue samples of rice (Oryza sativa) seedlings exposed to 0
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	yield	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	The alcohol yield in OsTPX-expressing transgenic yeast increased by approximately 29 % (0
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	homeostasis	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	Heterologous OsTPX expression increased the ability of the transgenic yeast cells to adapt and recover from reactive oxygen species (ROS)-induced oxidative stresses, such as a reduction of cellular hydroperoxide levels in the presence of hydrogen peroxide and menadione, by improving redox homeostasis
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	homeostasis	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	These results suggest that heterologous OsTPX expression increases acquired tolerance to ROS-induced oxidative stress by improving cellular redox homeostasis and improves fermentation capacity due to improved cell survival during fermentation, especially at a high temperature
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	leaf	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	In this study, a putative chloroplastic 2-Cys thioredoxin peroxidase (OsTPX) was identified by proteome analysis from leaf tissue samples of rice (Oryza sativa) seedlings exposed to 0
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	chloroplast	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae	In this study, a putative chloroplastic 2-Cys thioredoxin peroxidase (OsTPX) was identified by proteome analysis from leaf tissue samples of rice (Oryza sativa) seedlings exposed to 0
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	chloroplast	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	We found that OsPRX2 was localized in the chloroplast
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	tolerance	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	tolerance	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	In this study, a rice homologue gene of At2-CysPrxB, OsPRX2 was investigated aiming to characterize the effect of 2-Cys Prxs on the K(+)-deficiency tolerance in rice
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	tolerance	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	Overexpressed OsPRX2 causes the stomatal closing and K(+)-deficiency tolerance increasing, while knockout of OsPRX2 lead to serious defects in leaves phenotype and the stomatal opening under the K(+)-deficiency tolerance
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	tolerance	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	Detection of K(+) accumulation, antioxidant activity of transgenic plants under the starvation of potassium, further confirmed that OsPRX2 is a potential target for engineering plants with improved potassium deficiency tolerance
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	potassium	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	potassium	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	Detection of K(+) accumulation, antioxidant activity of transgenic plants under the starvation of potassium, further confirmed that OsPRX2 is a potential target for engineering plants with improved potassium deficiency tolerance
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	stomatal	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.
BAS1|OsTPX|OsPRX2	Os02g0537700	LOC_Os02g33450	stomatal	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	Overexpressed OsPRX2 causes the stomatal closing and K(+)-deficiency tolerance increasing, while knockout of OsPRX2 lead to serious defects in leaves phenotype and the stomatal opening under the K(+)-deficiency tolerance
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	meiosis	A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds.	 When genome editing to substitute mitosis for meiosis (MiMe)3,4 is combined with the expression of BBM1 in the egg cell, clonal progeny can be obtained that retain genome-wide parental heterozygosity
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	mitosis	A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds.	 When genome editing to substitute mitosis for meiosis (MiMe)3,4 is combined with the expression of BBM1 in the egg cell, clonal progeny can be obtained that retain genome-wide parental heterozygosity
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	development	Expression of genes from paternal alleles in rice zygotes and involvement of OsASGR-BBML1 in initiation of zygotic development.	 In addition, the suppression of the function of OsASGR-BBML1 and its homologues in zygotes resulted in the developmental arrest, suggesting that OsASGR-BBML1 possesses an important role in initiating zygotic development
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	cell division	Expression of genes from paternal alleles in rice zygotes and involvement of OsASGR-BBML1 in initiation of zygotic development.	 Interestingly, ectopic expression of OsASGR-BBML1 in egg cells induced nuclear and cell divisions, indicating that exogenously expressed OsASGR-BBML1 converts the proliferation status of the egg cell from quiescent to active
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	auxin	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.	 We identify OsYUCCA (OsYUC) auxin biosynthesis genes as direct targets of OsBBM1
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	auxin	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.	 In somatic embryogenesis, exogenous auxin triggers OsBBM1 expression, which then activates endogenous auxin biosynthesis OsYUC genes
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	auxin biosynthesis	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.	 We identify OsYUCCA (OsYUC) auxin biosynthesis genes as direct targets of OsBBM1
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	auxin biosynthesis	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.	 In somatic embryogenesis, exogenous auxin triggers OsBBM1 expression, which then activates endogenous auxin biosynthesis OsYUC genes
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	embryo	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.	 We used gene editing, transcriptome profiling, and chromatin immunoprecipitation to determine the molecular players involved in embryo initiation downstream of OsBBM1
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	embryo	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.	 Zygotic embryo initiation involves a partnership of male and female genomes, through which paternal OsBBM1 activates maternal OsYUC genes
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	somatic embryogenesis	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.	 Ectopic OsBBM1 initiates somatic embryogenesis without exogenous auxins but requires functional OsYUC genes
BBM1|OsASGR-BBML1|OsBBM1	Os11g0295900	LOC_Os11g19060	somatic embryogenesis	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.	 In somatic embryogenesis, exogenous auxin triggers OsBBM1 expression, which then activates endogenous auxin biosynthesis OsYUC genes
BBR	Os10g0115500	LOC_Os10g02620	leaf shape	The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox geneBkn3	In co-transfection experiments, BBR activates (GA/TC)8-containing promoters, and its overexpression in tobacco leads to a pronounced leaf shape modification
BBR	Os10g0115500	LOC_Os10g02620	leaf	The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox geneBkn3	In co-transfection experiments, BBR activates (GA/TC)8-containing promoters, and its overexpression in tobacco leads to a pronounced leaf shape modification
BBR	Os10g0115500	LOC_Os10g02620	transcription factor	The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox geneBkn3	The data presented suggest that expression of the barley BKn3 is regulated, at least in part, by the binding of the transcription factor BBR to GA/TC repeats
BBR	Os10g0115500	LOC_Os10g02620	ga	The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox geneBkn3	The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox geneBkn3
BC1	Os03g0416200	LOC_Os03g30250	cellulose	BRITTLE CULM1, Which Encodes a COBRA-Like Protein, Affects the Mechanical Properties of Rice Plants	In these types of cells, mutations in BC1 cause not only a reduction in cell wall thickness and cellulose content but also an increase in lignin level, suggesting that BC1, a gene that controls the mechanical strength of monocots, plays an important role in the biosynthesis of the cell walls of mechanical tissues
BC1	Os03g0416200	LOC_Os03g30250	cell wall	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	This expression pattern was highly similar to that of BC1, which encodes a COBRA-like protein involved in cellulose synthesis in secondary cell walls in rice
BC1	Os03g0416200	LOC_Os03g30250	culm	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components	Genetic analysis showed that cwa1 is allelic to brittle culm1 (bc1), which encodes the glycosylphosphatidylinositol-anchored COBRA-like protein specifically in plants
BC1	Os03g0416200	LOC_Os03g30250	culm	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components	BC1 is known as a regulator that controls the culm mechanical strength and cellulose content in the secondary cell walls of sclerenchyma, but the precise function of BC1 has not been resolved
BC1	Os03g0416200	LOC_Os03g30250	vascular bundle	BRITTLE CULM1, Which Encodes a COBRA-Like Protein, Affects the Mechanical Properties of Rice Plants	BC1, which encodes a COBRA-like protein, is expressed mainly in developing sclerenchyma cells and in vascular bundles of rice
BC1	Os03g0416200	LOC_Os03g30250	cellulose	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components	BC1 is known as a regulator that controls the culm mechanical strength and cellulose content in the secondary cell walls of sclerenchyma, but the precise function of BC1 has not been resolved
BC1	Os03g0416200	LOC_Os03g30250	cell wall	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components	BC1 is known as a regulator that controls the culm mechanical strength and cellulose content in the secondary cell walls of sclerenchyma, but the precise function of BC1 has not been resolved
BC1	Os03g0416200	LOC_Os03g30250	cell wall	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components	Our results suggest that CWA1/BC1 has an essential role in assembling cell wall constituents at their appropriate sites, thereby enabling synthesis of solid and flexible internodes in rice
BC1	Os03g0416200	LOC_Os03g30250	cell wall	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components
BC1	Os03g0416200	LOC_Os03g30250	culm	BRITTLE CULM1, Which Encodes a COBRA-Like Protein, Affects the Mechanical Properties of Rice Plants	To understand the molecular mechanism that controls the plant mechanical strength of crops, we characterized the classic rice mutant brittle culm1 (bc1) and isolated BC1 using a map-based cloning approach
BC1	Os03g0416200	LOC_Os03g30250	cell wall	The carbohydrate-binding module (CBM)-like sequence is crucial for rice CWA1/BC1 function in proper assembly of secondary cell wall materials	Our results suggested that CWA1/BC1 plays a role in assembling secondary cell wall materials at appropriate sites, enabling synthesis of highly ordered secondary cell wall structure with solid and flexible internodes in rice
BC1	Os03g0416200	LOC_Os03g30250	cell wall	The carbohydrate-binding module (CBM)-like sequence is crucial for rice CWA1/BC1 function in proper assembly of secondary cell wall materials	To investigate the importance of the CBM-like sequence of CWA1/BC1 in the assembly of secondary cell wall materials, Trp residues in the CBM-like sequence, which is important for carbohydrate binding, were substituted for Val residues and introduced into the cwa1 mutant
BC1	Os03g0416200	LOC_Os03g30250	cell wall	The carbohydrate-binding module (CBM)-like sequence is crucial for rice CWA1/BC1 function in proper assembly of secondary cell wall materials	CWA1/BC1 with the mutated sequence did not complement the abnormal secondary cell walls seen in the cwa1 mutant, indicating that the CBM-like sequence is essential for the proper function of CWA1/BC1, including assembly of secondary cell wall materials
BC1	Os03g0416200	LOC_Os03g30250	cell wall	The carbohydrate-binding module (CBM)-like sequence is crucial for rice CWA1/BC1 function in proper assembly of secondary cell wall materials	The carbohydrate-binding module (CBM)-like sequence is crucial for rice CWA1/BC1 function in proper assembly of secondary cell wall materials
BC1	Os03g0416200	LOC_Os03g30250	architecture	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components
BC1	Os03g0416200	LOC_Os03g30250	cell wall	BRITTLE CULM1, Which Encodes a COBRA-Like Protein, Affects the Mechanical Properties of Rice Plants	In these types of cells, mutations in BC1 cause not only a reduction in cell wall thickness and cellulose content but also an increase in lignin level, suggesting that BC1, a gene that controls the mechanical strength of monocots, plays an important role in the biosynthesis of the cell walls of mechanical tissues
BC1	Os03g0416200	LOC_Os03g30250	cellulose	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	This expression pattern was highly similar to that of BC1, which encodes a COBRA-like protein involved in cellulose synthesis in secondary cell walls in rice
BC10|FC116	Os05g0170000	LOC_Os05g07790	cellulose	BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.)	Monosaccharide analysis of total and fractioned wall residues revealed that bc10 showed impaired cellulose biosynthesis
BC10|FC116	Os05g0170000	LOC_Os05g07790	cellulose	BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.)	BC10 is mainly expressed in the developing sclerenchyma and vascular bundle cells, and its deficiency causes a reduction in the levels of cellulose and AGPs, leading to inferior mechanical properties
BC10|FC116	Os05g0170000	LOC_Os05g07790	vascular bundle	BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.)	BC10 is mainly expressed in the developing sclerenchyma and vascular bundle cells, and its deficiency causes a reduction in the levels of cellulose and AGPs, leading to inferior mechanical properties
BC10|FC116	Os05g0170000	LOC_Os05g07790	culm	BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.)	We report here the isolation and in-depth characterization of a brittle rice mutant, brittle culm 10 (bc10)
BC10|FC116	Os05g0170000	LOC_Os05g07790	growth	BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.)	bc10 plants show pleiotropic phenotypes, including brittleness of the plant body and retarded growth
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	 ga 	Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation	Therefore, BC12/GDD1, a kinesin-like protein with transcription regulation activity, mediates cell elongation by regulating the GA biosynthesis pathway in rice
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	 ga 	Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation	Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	root	Brittle Culm 12, a dual-targeting kinesin-4 protein, controls cell-cycle progression and wall properties in rice	Mitotic microtubule array comparison, flow cytometric analysis and expression assays of cyclin-dependent kinase (CDK) complexes in root-tip cells showed that cell-cycle progression is affected in bc12 mutants
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	culm	Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation	GDD1 was cloned by a map-based approach, was expressed constitutively, and was found to encode the kinesin-like protein BRITTLE CULM12 (BC12)
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	dwarf	Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation	Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	dwarf	Brittle Culm 12, a dual-targeting kinesin-4 protein, controls cell-cycle progression and wall properties in rice	bc12 mutants display dwarfism resulting from a significant reduction in cell number and brittleness due to an alteration in cellulose microfibril orientation and wall composition
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	culm	Brittle Culm 12, a dual-targeting kinesin-4 protein, controls cell-cycle progression and wall properties in rice	Here, we report the functional characterization of Brittle Culm12 (BC12), a gene encoding a kinesin-4 protein
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	cell elongation	Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation	Therefore, BC12/GDD1, a kinesin-like protein with transcription regulation activity, mediates cell elongation by regulating the GA biosynthesis pathway in rice
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	cell elongation	Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation	Mutation of rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	cell division	Brittle Culm 12, a dual-targeting kinesin-4 protein, controls cell-cycle progression and wall properties in rice	BC12 is expressed mainly in tissues undergoing cell division and secondary wall thickening
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	cellulose	Brittle Culm 12, a dual-targeting kinesin-4 protein, controls cell-cycle progression and wall properties in rice	bc12 mutants display dwarfism resulting from a significant reduction in cell number and brittleness due to an alteration in cellulose microfibril orientation and wall composition
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	cellulose	Brittle Culm 12, a dual-targeting kinesin-4 protein, controls cell-cycle progression and wall properties in rice	Therefore, BC12 functions as a dual-targeting kinesin protein and is implicated in cell-cycle progression, cellulose microfibril deposition and wall composition in the monocot plant rice
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	leaf	Characterization of a novel allele of bc12/gdd1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds	 In this study we reveal that the novel BC12328Leu allele of BC12 modulated plant leaf color in yd1 plants, which has not been previously reported in studies of BC12/GDD1/MTD1/SRG1
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	leaf color	Characterization of a novel allele of bc12/gdd1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds	 In this study we reveal that the novel BC12328Leu allele of BC12 modulated plant leaf color in yd1 plants, which has not been previously reported in studies of BC12/GDD1/MTD1/SRG1
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	development	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 We conclude that LGW regulates grain development by directly binding to the GW7 promoter and activating its expression
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	grain	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 Overexpression of LGW increased the grain length, indicating that LGW is a positive regulator for regulating grain length
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	grain	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 Elevating the GW7 expression levels in lgw plants rescued the small grain size phenotype
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	grain	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 We conclude that LGW regulates grain development by directly binding to the GW7 promoter and activating its expression
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	grain	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 Our findings revealed that LGW plays an important role in regulating grain size, and manipulation of this gene provides a new strategy for regulating grain weight in rice
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	grain length	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 Overexpression of LGW increased the grain length, indicating that LGW is a positive regulator for regulating grain length
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	grain size	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 Elevating the GW7 expression levels in lgw plants rescued the small grain size phenotype
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	grain size	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 Our findings revealed that LGW plays an important role in regulating grain size, and manipulation of this gene provides a new strategy for regulating grain weight in rice
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	nucleus	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 Protein sequence alignment analysis revealed that the mutation site was located at the nuclear localization signal (NLS) of LGW/BC12, resulting in the lgw protein not being located in the nucleus
BC12|GDD1|YD1|LGW	Os09g0114500	LOC_Os09g02650	grain weight	Low grain weight, a new allele of BRITTLE CULM12, affects grain size through regulating GW7 expression in rice.	 Our findings revealed that LGW plays an important role in regulating grain size, and manipulation of this gene provides a new strategy for regulating grain weight in rice
bc15|OsCTL1	Os09g0494200	LOC_Os09g32080	cellulose	Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice	Mutation of BC15/OsCTL1 causes reduced cellulose content and mechanical strength without obvious alterations in plant growth
bc15|OsCTL1	Os09g0494200	LOC_Os09g32080	cellulose	Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice	Investigation of the global expression profile of wild-type and bc15 plants, using Illumina RNA sequencing, further suggested a possible mechanism by which BC15/OsCTL1 mediates cellulose biosynthesis and cell wall remodeling
bc15|OsCTL1	Os09g0494200	LOC_Os09g32080	cell wall	Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice	Investigation of the global expression profile of wild-type and bc15 plants, using Illumina RNA sequencing, further suggested a possible mechanism by which BC15/OsCTL1 mediates cellulose biosynthesis and cell wall remodeling
bc15|OsCTL1	Os09g0494200	LOC_Os09g32080	culm	Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice	In this study, we report the isolation of a brittle culm mutant, bc15, and the map-based cloning of the BC15/OsCTL1 (for chitinase-like1) gene affected in the mutant
bc15|OsCTL1	Os09g0494200	LOC_Os09g32080	growth	Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice	Mutation of BC15/OsCTL1 causes reduced cellulose content and mechanical strength without obvious alterations in plant growth
BC16	Os05g0144000	LOC_Os05g05200	cellulose	Glycosylphosphatidylinositol anchor lipid remodeling directs proteins to the plasma membrane and governs cell wall mechanics.	 The bc16 mutant exhibits fragile internodes, resulting from reduced cell wall thickness and cellulose content
BC16	Os05g0144000	LOC_Os05g05200	cellulose	Glycosylphosphatidylinositol anchor lipid remodeling directs proteins to the plasma membrane and governs cell wall mechanics.	 Loss of BC16 alters GPI lipid structure and disturbs the targeting of BC1, a GPI-AP for cellulose biosynthesis, to the PM lipid nanodomains
BC16	Os05g0144000	LOC_Os05g05200	cell wall	Glycosylphosphatidylinositol anchor lipid remodeling directs proteins to the plasma membrane and governs cell wall mechanics.	 The bc16 mutant exhibits fragile internodes, resulting from reduced cell wall thickness and cellulose content
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cell wall	The rice dynamin-related protein DRP2B mediates membrane trafficking, and thereby plays a critical role in secondary cell wall cellulose biosynthesis	Mutation of OsDRP2B disturbs the membrane trafficking that is essential for normal cellulose biosynthesis of the secondary cell wall, thereby leading to inferior mechanical properties in rice plants
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cellulose	The rice dynamin-related protein DRP2B mediates membrane trafficking, and thereby plays a critical role in secondary cell wall cellulose biosynthesis	Mutation of OsDRP2B disturbs the membrane trafficking that is essential for normal cellulose biosynthesis of the secondary cell wall, thereby leading to inferior mechanical properties in rice plants
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cell wall	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	The bc3 mutation resulted in reductions of 28-36% in cellulose contents in culms, leaves, and roots, while other cell wall components remained unaffected
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cell wall	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	From promoter-GUS analyses, it was suggested that BC3 expression is directly correlated with active secondary cell wall synthesis
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cell wall	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	These results suggest that BC3 is tightly involved in the synthesis of cellulose and is essential for proper secondary cell wall construction
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cell wall	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	root	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	The bc3 mutation resulted in reductions of 28-36% in cellulose contents in culms, leaves, and roots, while other cell wall components remained unaffected
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	culm	The rice dynamin-related protein DRP2B mediates membrane trafficking, and thereby plays a critical role in secondary cell wall cellulose biosynthesis	Here, we report the functional characterization of Brittle Culm3 (BC3), a gene encoding OsDRP2B
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cellulose	The rice dynamin-related protein DRP2B mediates membrane trafficking, and thereby plays a critical role in secondary cell wall cellulose biosynthesis	Consistent with the expression of BC3 in mechanical tissues, the bc3 mutation reduces mechanical strength, which results from decreased cellulose content and altered secondary wall structure
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cellulose	The rice dynamin-related protein DRP2B mediates membrane trafficking, and thereby plays a critical role in secondary cell wall cellulose biosynthesis	BC3 mutation and overexpression altered the abundance of cellulose synthase catalytic subunit 4 (OsCESA4) in the PM and in the endomembrane systems
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cellulose	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	The bc3 mutation resulted in reductions of 28-36% in cellulose contents in culms, leaves, and roots, while other cell wall components remained unaffected
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cellulose	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	These results suggest that BC3 is tightly involved in the synthesis of cellulose and is essential for proper secondary cell wall construction
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	cell wall	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	culm	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	culm	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	Through positional cloning, we have identified a gene responsible for the brittle culm phenotype in rice, brittle culm 3 (bc3)
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	culm	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	The bc3 mutation resulted in reductions of 28-36% in cellulose contents in culms, leaves, and roots, while other cell wall components remained unaffected
BC3|OsDRP2B	Os02g0738900	LOC_Os02g50550	culm	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	xylem	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	In rice expressing a reporter construct, BC6 promoter activity was detected in the culms, nodes, and flowers, and was localized primarily in xylem tissues
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cell wall	A missense mutation in the transmembrane domain of CESA9 affects cell wall biosynthesis and plant growth in rice	These results indicate that OsCESA9 plays an important role in cell wall biosynthesis and plant growth
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cellulose	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	Bc6 encodes a cellulose synthase catalytic subunit, OsCesA9, and has a missense mutation in its highly conserved region
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	growth	A missense mutation in the transmembrane domain of CESA9 affects cell wall biosynthesis and plant growth in rice	These results indicate that OsCESA9 plays an important role in cell wall biosynthesis and plant growth
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cell wall	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	Transmission electron microscopy analysis revealed that Bc6 mutation reduced the cell wall thickness of sclerenchymal cells in culms
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cell wall	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	These results indicate that BC6 is a secondary cell wall-specific CesA that plays an important role in proper deposition of cellulose in the secondary cell walls
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cellulose	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	In culms of the Bc6 mutant, the proportion of cellulose was reduced by 38%, while that of hemicellulose was increased by 34%
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cellulose	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	Introduction of the semi-dominant Bc6 mutant gene into wild-type rice significantly reduced the percentage of cellulose, causing brittle phenotypes
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cellulose	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	These results indicate that BC6 is a secondary cell wall-specific CesA that plays an important role in proper deposition of cellulose in the secondary cell walls
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	flower	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	In rice expressing a reporter construct, BC6 promoter activity was detected in the culms, nodes, and flowers, and was localized primarily in xylem tissues
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	culm	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	In culms of the Bc6 mutant, the proportion of cellulose was reduced by 38%, while that of hemicellulose was increased by 34%
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	culm	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	Transmission electron microscopy analysis revealed that Bc6 mutation reduced the cell wall thickness of sclerenchymal cells in culms
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	culm	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls	In rice expressing a reporter construct, BC6 promoter activity was detected in the culms, nodes, and flowers, and was localized primarily in xylem tissues
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	culm	A missense mutation in the transmembrane domain of CESA9 affects cell wall biosynthesis and plant growth in rice	The OsCESA9 gene is predominantly expressed in the culms of mature stage plants, consistent with the brittle phenotype in the culm
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cellulose	A missense mutation in the transmembrane domain of CESA9 affects cell wall biosynthesis and plant growth in rice	Genetic analysis and map-based cloning showed that all the phenotype of S1-60 mutant was caused by a recessive point mutation in the OsCESA9 gene, which encodes the cellulose synthase A subunit 9
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cellulose	Three Distinct Rice Cellulose Synthase Catalytic Subunit Genes Required for Cellulose Synthesis in the Secondary Wall	We show here that the genes responsible for three distinct brittle mutations of rice, induced by the insertion of the endogenous retrotransposon Tos17, correspond to CesA (cellulose synthase catalytic subunit) genes, OsCesA4, OsCesA7 and OsCesA9
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	resistance	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cellulose	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	biomass	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	lodging	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	lodging resistance	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	salt	A Semi-Dominant Mutation in OsCESA9 Improves Salt Tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice	A Semi-Dominant Mutation in OsCESA9 Improves Salt Tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	tolerance	A Semi-Dominant Mutation in OsCESA9 Improves Salt Tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice	A Semi-Dominant Mutation in OsCESA9 Improves Salt Tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	salt tolerance	A Semi-Dominant Mutation in OsCESA9 Improves Salt Tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice	A Semi-Dominant Mutation in OsCESA9 Improves Salt Tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice
Bc6|OsCesA9	Os09g0422500	LOC_Os09g25490	cell wall	A Semi-Dominant Mutation in OsCESA9 Improves Salt Tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice	A Semi-Dominant Mutation in OsCESA9 Improves Salt Tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	Interaction of rice bZIP protein REB with the 5'- upstream re-gion of both rice sbe1 gene and waxy gene	Rice starch branching enzyme 1 (SBE1) and granule-bound starch synthase (GBSS) catalyzed the biosynthesis of amylopectin and amylose in rice developing endosperm respectively, and the genes encoding these two enzymes, sbe1 and waxy, are mainly expressed in the endosperm
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	cDNA Cloning and Sequence Analysis of Rice Sbe1 and Sbe3 Genes	The cDNA of two SBE(starch-branching enzyme) genes Sbe1 and Sbe3 encoding SBE I and SBE III (two major isoforms in rice) were cloned by an improved RT-PCR technique, from a template cDNA library derived from the total mRNAs extracted from the immature seeds of a japonica rice Wuyunjing 7
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	cDNA Cloning and Sequence Analysis of Rice Sbe1 and Sbe3 Genes	The cloned Sbe1 and Sbe3 cDNAs make it possible to improve rice starch quality through genetic engineering
BEI|SBE1	Os06g0726400	LOC_Os06g51084	seed	cDNA Cloning and Sequence Analysis of Rice Sbe1 and Sbe3 Genes	The cDNA of two SBE(starch-branching enzyme) genes Sbe1 and Sbe3 encoding SBE I and SBE III (two major isoforms in rice) were cloned by an improved RT-PCR technique, from a template cDNA library derived from the total mRNAs extracted from the immature seeds of a japonica rice Wuyunjing 7
BEI|SBE1	Os06g0726400	LOC_Os06g51084	branching	Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose	We determined the crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose at a resolution of 2
BEI|SBE1	Os06g0726400	LOC_Os06g51084	branching	Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose	Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose
BEI|SBE1	Os06g0726400	LOC_Os06g51084	branching	Biochemical and Crystallographic Characterization of the Starch Branching Enzyme I (BEI) fromOryza sativaL	We overproduced rice branching enzyme I (BEI) in Escherichia coli cells, and the resulting enzyme (rBEI) was characterized with respect to biochemical and crystallographic properties
BEI|SBE1	Os06g0726400	LOC_Os06g51084	branching	Biochemical and Crystallographic Characterization of the Starch Branching Enzyme I (BEI) fromOryza sativaL	Biochemical and Crystallographic Characterization of the Starch Branching Enzyme I (BEI) fromOryza sativaL
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	Biochemical and Crystallographic Characterization of the Starch Branching Enzyme I (BEI) fromOryza sativaL	Biochemical and Crystallographic Characterization of the Starch Branching Enzyme I (BEI) fromOryza sativaL
BEI|SBE1	Os06g0726400	LOC_Os06g51084	branching	cDNA Cloning and Sequence Analysis of Rice Sbe1 and Sbe3 Genes	The cDNA of two SBE(starch-branching enzyme) genes Sbe1 and Sbe3 encoding SBE I and SBE III (two major isoforms in rice) were cloned by an improved RT-PCR technique, from a template cDNA library derived from the total mRNAs extracted from the immature seeds of a japonica rice Wuyunjing 7
BEI|SBE1	Os06g0726400	LOC_Os06g51084	branching	The Action of Rice Branching Enzyme I (BEI) on Starches	The rice branching enzyme I (BEI) overproduced in Escherichia coli cells was investigated with respect to action on starches
BEI|SBE1	Os06g0726400	LOC_Os06g51084	branching	The Action of Rice Branching Enzyme I (BEI) on Starches	The Action of Rice Branching Enzyme I (BEI) on Starches
BEI|SBE1	Os06g0726400	LOC_Os06g51084	endosperm	Interaction of rice bZIP protein REB with the 5'- upstream re-gion of both rice sbe1 gene and waxy gene	Rice starch branching enzyme 1 (SBE1) and granule-bound starch synthase (GBSS) catalyzed the biosynthesis of amylopectin and amylose in rice developing endosperm respectively, and the genes encoding these two enzymes, sbe1 and waxy, are mainly expressed in the endosperm
BEI|SBE1	Os06g0726400	LOC_Os06g51084	endosperm	Interaction of rice bZIP protein REB with the 5'- upstream re-gion of both rice sbe1 gene and waxy gene	Within the 5'-upstream region of rice sbe1 gene, we identified a 53 bp fragment C53 which could interact with the nuclear proteins extracted from rice endosperm
BEI|SBE1	Os06g0726400	LOC_Os06g51084	endosperm	Interaction of rice bZIP protein REB with the 5'- upstream re-gion of both rice sbe1 gene and waxy gene	These results suggested that the expression of sbe1 and waxy gene in rice developing endosperm may be coordinately regulated by REB-like bZIP transcriptional factors
BEI|SBE1	Os06g0726400	LOC_Os06g51084	branching	Interaction of rice bZIP protein REB with the 5'- upstream re-gion of both rice sbe1 gene and waxy gene	Rice starch branching enzyme 1 (SBE1) and granule-bound starch synthase (GBSS) catalyzed the biosynthesis of amylopectin and amylose in rice developing endosperm respectively, and the genes encoding these two enzymes, sbe1 and waxy, are mainly expressed in the endosperm
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	Furthermore, OsbZIP58 was shown to bind directly to the promoters of six starch-synthesizing genes, OsAGPL3, Wx, OsSSIIa, SBE1, OsBEIIb, and ISA2, and to regulate their expression
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	The Action of Rice Branching Enzyme I (BEI) on Starches	The rice branching enzyme I (BEI) overproduced in Escherichia coli cells was investigated with respect to action on starches
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	The Action of Rice Branching Enzyme I (BEI) on Starches	BEI treatment decreased the turbidity of starch suspensions with distinct pasting behaviors from a native starch
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	The Action of Rice Branching Enzyme I (BEI) on Starches	The Action of Rice Branching Enzyme I (BEI) on Starches
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	Relative importance of branching enzyme isoforms in determining starch fine structure and physicochemical properties of indica rice.	 Mutations of either BEI or BEIIa did not alter the starch crystallite pattern (A-type)
BEI|SBE1	Os06g0726400	LOC_Os06g51084	starch	Relative importance of branching enzyme isoforms in determining starch fine structure and physicochemical properties of indica rice.	 It is concluded that the relative importance in determining starch fine structures and functionality was in the order of BEIIb &gt; BEI &gt; BEIIa
bel|CYP81A6|bsl	Os03g0760200|Os03g0760100	LOC_Os03g55240	resistance	Investigation of clomazone-tolerance mechanism in a long-grain cultivar of rice	While Arabidopsis thaliana transformed with a rice cytochrome P450, CYP81A6, showed resistance to clomazone, the cyp81a6 knockout Kasalath was unchanged in its clomazone sensitivity
BET1	Os04g0477300	LOC_Os04g40140	transcription factor	Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice.	Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice.
BET1	Os04g0477300	LOC_Os04g40140	tolerance	Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice.	Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice.
BET1	Os04g0477300	LOC_Os04g40140	boron-toxicity tolerance	Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice.	Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice.
BET1	Os04g0477300	LOC_Os04g40140	boron-toxicity tolerance	Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice.	In this report, we attempted to clone BET1 using the map-based cloning method, and identified it as a NAC-like transcription factor gene that has not been previously reported to be an excess B-tolerance-related gene.
beta-OsLCY|OsLCY	Os02g0190600	LOC_Os02g09750	photoinhibition	Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice	The decreased Fv/Fm indicated that photoinhibition occurred in the OsLCY RNAi plants and Oscrtiso mutants under normal conditions.
BG1	Os03g0175800	LOC_Os03g07920	grain	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Overexpression of BG1 leads to significantly increased grain size, and the severe lines exhibit obviously perturbed gravitropism
BG1	Os03g0175800	LOC_Os03g07920	seed	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Manipulation of BG1 in both rice and Arabidopsis can enhance plant biomass, seed weight, and yield
BG1	Os03g0175800	LOC_Os03g07920	yield	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Manipulation of BG1 in both rice and Arabidopsis can enhance plant biomass, seed weight, and yield
BG1	Os03g0175800	LOC_Os03g07920	grain size	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Overexpression of BG1 leads to significantly increased grain size, and the severe lines exhibit obviously perturbed gravitropism
BG1	Os03g0175800	LOC_Os03g07920	auxin	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	In addition, the mutant has increased sensitivities to both auxin and N-1-naphthylphthalamic acid, an auxin transport inhibitor, whereas knockdown of BG1 results in decreased sensitivities and smaller grains
BG1	Os03g0175800	LOC_Os03g07920	auxin	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Moreover, BG1 is specifically induced by auxin treatment, preferentially expresses in the vascular tissue of culms and young panicles, and encodes a novel membrane-localized protein, strongly suggesting its role in regulating auxin transport
BG1	Os03g0175800	LOC_Os03g07920	auxin transport	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	In addition, the mutant has increased sensitivities to both auxin and N-1-naphthylphthalamic acid, an auxin transport inhibitor, whereas knockdown of BG1 results in decreased sensitivities and smaller grains
BG1	Os03g0175800	LOC_Os03g07920	auxin transport	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Moreover, BG1 is specifically induced by auxin treatment, preferentially expresses in the vascular tissue of culms and young panicles, and encodes a novel membrane-localized protein, strongly suggesting its role in regulating auxin transport
BG1	Os03g0175800	LOC_Os03g07920	biomass	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice	Manipulation of BG1 in both rice and Arabidopsis can enhance plant biomass, seed weight, and yield
BG1	Os03g0175800	LOC_Os03g07920	seed weight	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice	Manipulation of BG1 in both rice and Arabidopsis can enhance plant biomass, seed weight, and yield
BG3|OsPUP4	Os01g0680200	LOC_Os01g48800	grain size	Big Grain3, encoding a purine permease, regulates grain size via modulating cytokinin transport in rice	Big Grain3, encoding a purine permease, regulates grain size via modulating cytokinin transport in rice
BG3|OsPUP4	Os01g0680200	LOC_Os01g48800	cytokinin transport	Big Grain3, encoding a purine permease, regulates grain size via modulating cytokinin transport in rice	Big Grain3, encoding a purine permease, regulates grain size via modulating cytokinin transport in rice
Bh4	Os04g0460000	LOC_Os04g38660	transporter	Genetic control of a transition from black to straw-white seed hull in rice domestication	Bh4 encodes an amino acid transporter
Bh4	Os04g0460000	LOC_Os04g38660	domestication	The role of Bh4 in parallel evolution of hull colour in domesticated and weedy rice	Tests for selection indicate that Asian crops and straw hull weeds deviate from neutrality at this gene, suggesting possible selection on Bh4 during both rice domestication and de-domestication
bip130	Os05g0113500	LOC_Os05g02260	defense	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.
bip130	Os05g0113500	LOC_Os05g02260	defense	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	A transient expression analysis in combination with mutant analysis in rice protoplasts revealed that bip130 is required for ABA-induced antioxidant defense in an OsMPK1-dependent manner
bip130	Os05g0113500	LOC_Os05g02260	defense	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	Furthermore, bip130 can be phosphorylated by OsMPK1 at Thr-153 in vitro, and Thr-153 is essential for the ABA-induced antioxidant defense by OsMPK1
bip130	Os05g0113500	LOC_Os05g02260	defense	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	These results reveal that OsMPK1 phosphorylates bip130 at Thr-153 to regulate ABA-induced antioxidant defense
bip130	Os05g0113500	LOC_Os05g02260	abscisic acid	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.
BK-PP2A	Os05g0555100	LOC_Os05g48150	salt sensitivity	Mutual Regulation of Receptor-Like Kinase SIT1 and B'-PP2A Shapes the Early Response of Rice to Salt Stress	Together, these results suggest that B'-PP2A dephosphorylates SIT1 in planta under normal conditions and at the onset of salt exposure to maintain SIT1 phosphorylation at a low level, which consequently suppresses plant salt sensitivity.
BK-PP2A	Os05g0555100	LOC_Os05g48150	salt tolerance	Mutual Regulation of Receptor-Like Kinase SIT1 and B'-PP2A Shapes the Early Response of Rice to Salt Stress	In this way, SIT1 activity is decreased to a low level by salt, and MAPK signaling is limited to benefit plant growth. An increase in B'-PP2A holoenzyme may target other substrates to positively regulate salt tolerance.
BLEC-Str8	Os04g0110100	LOC_Os04g01950	salt stress	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice	BLEC-Str8 URS shows basal activity under un-stressed condition, however, it is inducible under salt stress condition in both root and leaf tissues in young seedling and mature plants
BLEC-Str8	Os04g0110100	LOC_Os04g01950	salt stress	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice	Activity of BLEC-Str8 URS has been found to be vascular tissue preferential, however, under salt stress condition its activity is also found in the mesophyll tissue
BLEC-Str8	Os04g0110100	LOC_Os04g01950	manganese	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice	NBS-Str1 and BLEC-Str8 URSs are inducible by heavy metal, copper and manganese
BLEC-Str8	Os04g0110100	LOC_Os04g01950	root	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice	BLEC-Str8 URS shows basal activity under un-stressed condition, however, it is inducible under salt stress condition in both root and leaf tissues in young seedling and mature plants
BLEC-Str8	Os04g0110100	LOC_Os04g01950	seedling	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice	BLEC-Str8 URS shows basal activity under un-stressed condition, however, it is inducible under salt stress condition in both root and leaf tissues in young seedling and mature plants
BLEC-Str8	Os04g0110100	LOC_Os04g01950	leaf	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice	BLEC-Str8 URS shows basal activity under un-stressed condition, however, it is inducible under salt stress condition in both root and leaf tissues in young seedling and mature plants
BLEC-Str8	Os04g0110100	LOC_Os04g01950	salt	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice	NBS-Str1 and BLEC-Str8 genes have been identified, by analysing the transcriptome data of cold, salt and desiccation stress-treated 7-day-old rice (Oryza sativa L
BLEC-Str8	Os04g0110100	LOC_Os04g01950	salt	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice	BLEC-Str8 URS shows basal activity under un-stressed condition, however, it is inducible under salt stress condition in both root and leaf tissues in young seedling and mature plants
BLEC-Str8	Os04g0110100	LOC_Os04g01950	salt	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice	Activity of BLEC-Str8 URS has been found to be vascular tissue preferential, however, under salt stress condition its activity is also found in the mesophyll tissue
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	inflorescence	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	BLS1 is expressed strongly in young inflorescence, specifically the young lemmas and paleas of spikelets
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	architecture	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	In bls1 mutant, floral-organ identity and floral-organ patterning are normal, and the defects occur at the stage of the lemma and palea expansion, whereas the other aspects of floral architecture and form are not affected
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Here, we isolated a rice mutant, beak-shaped grain1 (bsg1), which produced beak-shaped grains of decreased width, thickness and weight with a loosely interlocked lemma and palea that were unable to close tightly
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Consistent with the lemma and palea shapes, the outer parenchyma cell layers of these bsg1 tissues developed fewer cells with decreased size
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	cell division	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Our results suggest that BSG1 determines grain shape and size probably by modifying cell division and expansion in the grain hull
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	grain size	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	The BSG1 mutation affected the expression of genes potentially involved in the cell cycle and GW2, an important regulator of grain size in rice
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	palea	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Here, we isolated a rice mutant, beak-shaped grain1 (bsg1), which produced beak-shaped grains of decreased width, thickness and weight with a loosely interlocked lemma and palea that were unable to close tightly
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	palea	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Consistent with the lemma and palea shapes, the outer parenchyma cell layers of these bsg1 tissues developed fewer cells with decreased size
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	grain	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Here, we isolated a rice mutant, beak-shaped grain1 (bsg1), which produced beak-shaped grains of decreased width, thickness and weight with a loosely interlocked lemma and palea that were unable to close tightly
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	grain	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Starch granules were also irregularly packaged in the bsg1 grains
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	grain	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	The BSG1 mutation affected the expression of genes potentially involved in the cell cycle and GW2, an important regulator of grain size in rice
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	grain	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Our results suggest that BSG1 determines grain shape and size probably by modifying cell division and expansion in the grain hull
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	spikelet	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	In this study, we characterized a rice mutant, beak like spikelet1 (bls1), which specifically affects development of the lemma and palea
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	spikelet	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	BLS1 is expressed strongly in young inflorescence, specifically the young lemmas and paleas of spikelets
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	In this study, we characterized a rice mutant, beak like spikelet1 (bls1), which specifically affects development of the lemma and palea
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	In bls1 mutant, floral-organ identity and floral-organ patterning are normal, and the defects occur at the stage of the lemma and palea expansion, whereas the other aspects of floral architecture and form are not affected
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	BLS1 is expressed strongly in young inflorescence, specifically the young lemmas and paleas of spikelets
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	Our study suggested that BLS1 is required for lateral development of the lemma and palea and does not function at stages of floral-organ initiation and patterning
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	cell cycle	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	The BSG1 mutation affected the expression of genes potentially involved in the cell cycle and GW2, an important regulator of grain size in rice
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	stem	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Quantitative PCR and GUS fusion reporter assays showed that BSG1 was expressed mainly in the young panicle and elongating stem
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	starch	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Starch granules were also irregularly packaged in the bsg1 grains
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	palea	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	In this study, we characterized a rice mutant, beak like spikelet1 (bls1), which specifically affects development of the lemma and palea
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	palea	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	In bls1 mutant, floral-organ identity and floral-organ patterning are normal, and the defects occur at the stage of the lemma and palea expansion, whereas the other aspects of floral architecture and form are not affected
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	palea	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	BLS1 is expressed strongly in young inflorescence, specifically the young lemmas and paleas of spikelets
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	palea	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	Our study suggested that BLS1 is required for lateral development of the lemma and palea and does not function at stages of floral-organ initiation and patterning
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	floral	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	In bls1 mutant, floral-organ identity and floral-organ patterning are normal, and the defects occur at the stage of the lemma and palea expansion, whereas the other aspects of floral architecture and form are not affected
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	floral	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	Expression of the AP1-like and SEP-like floral homeotic genes were not changed in the bls1 mutant
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	floral	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	Our study suggested that BLS1 is required for lateral development of the lemma and palea and does not function at stages of floral-organ initiation and patterning
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	panicle	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	Quantitative PCR and GUS fusion reporter assays showed that BSG1 was expressed mainly in the young panicle and elongating stem
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	palea	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice.	Detailed morphological analysis indicated that the th1 mutation caused a reduction in the size of tubercles, which are convex structures on the surface of the lemma and palea
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	palea	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice.	Thus, the TH1 gene seems to be involved in fine-tuning the morphogenesis of the lemma and palea
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice.	Detailed morphological analysis indicated that the th1 mutation caused a reduction in the size of tubercles, which are convex structures on the surface of the lemma and palea
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice.	By contrast, the number of tubercle rows and their spatial distribution on the lemma were not affected in the th1 mutant
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice.	Thus, the TH1 gene seems to be involved in fine-tuning the morphogenesis of the lemma and palea
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice.	In situ hybridization analysis revealed that TH1 was highly expressed in the primordia of the lemma and palea, but only weakly expressed in the primordia of the sterile lemma and rudimentary glume
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	lemma	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice.	The result showed that the th1 mutation strongly affected the morphology of the extra lemma of eg1, but had no significant effect on the transformed lemma of g1
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	sterile	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice.	In situ hybridization analysis revealed that TH1 was highly expressed in the primordia of the lemma and palea, but only weakly expressed in the primordia of the sterile lemma and rudimentary glume
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	sterile	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice.	We then examined the effect of th1 mutation on the lemma-like structure formed in the long sterile lemma/glume1 (g1) and extra glume1 (eg1) mutants
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	grain	The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.	The afd1 mutant showed variable defects including the dwarfism, long panicle, low seed setting and reduced grain yield
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	seed	The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.	The afd1 mutant showed variable defects including the dwarfism, long panicle, low seed setting and reduced grain yield
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	grain yield	The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.	The afd1 mutant showed variable defects including the dwarfism, long panicle, low seed setting and reduced grain yield
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	yield	The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.	The afd1 mutant showed variable defects including the dwarfism, long panicle, low seed setting and reduced grain yield
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	cell division	The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.	Meantime, our results suggested that AFD1 regulated the expression of cell division and expansion related genes
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	floral	The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.	In addition, abnormal floral organs were also observed in the afd1 mutant including slender and thick hulls, and hull-like lodicules
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	floral organ	The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.	In addition, abnormal floral organs were also observed in the afd1 mutant including slender and thick hulls, and hull-like lodicules
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	spikelet	The rice TRIANGULAR HULL1 protein acts as a transcriptional repressor in regulating lateral development of spikelet.	These results indicate that TH1 functions as a transcription repressor and regulates cell expansion during the lateral development of spikelet
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	development	The rice TRIANGULAR HULL1 protein acts as a transcriptional repressor in regulating lateral development of spikelet.	TH1 has been shown to regulate the lateral development of spikelet, but its mode of action remains unclear
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	development	The rice TRIANGULAR HULL1 protein acts as a transcriptional repressor in regulating lateral development of spikelet.	These results indicate that TH1 functions as a transcription repressor and regulates cell expansion during the lateral development of spikelet
BLS1|BSG1|OsG1L6|TH1|AFD1	Os02g0811000	LOC_Os02g56610	nucleus	The rice TRIANGULAR HULL1 protein acts as a transcriptional repressor in regulating lateral development of spikelet.	The TH1 protein was shown to localize in the nucleus and possess transcriptional repression activity
Bph14	Os03g0848700	LOC_Os03g63150	salicylic acid	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice	Expression of Bph14 activates the salicylic acid signaling pathway and induces callose deposition in phloem cells and trypsin inhibitor production after planthopper infestation, thus reducing the feeding, growth rate, and longevity of the BPH insects
Bph14	Os03g0848700	LOC_Os03g63150	defense	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice	Sequence comparison indicates that Bph14 carries a unique LRR domain that might function in recognition of the BPH insect invasion and activating the defense response
Bph14	Os03g0848700	LOC_Os03g63150	growth	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice	Expression of Bph14 activates the salicylic acid signaling pathway and induces callose deposition in phloem cells and trypsin inhibitor production after planthopper infestation, thus reducing the feeding, growth rate, and longevity of the BPH insects
Bph14	Os03g0848700	LOC_Os03g63150	brown planthopper	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice
Bph14	Os03g0848700	LOC_Os03g63150	defense response	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice	Sequence comparison indicates that Bph14 carries a unique LRR domain that might function in recognition of the BPH insect invasion and activating the defense response
Bph14	Os03g0848700	LOC_Os03g63150	vascular bundle	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice	Bph14 is predominantly expressed in vascular bundles, the site of BPH feeding
Bph14	Os03g0848700	LOC_Os03g63150	insect	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice	Sequence comparison indicates that Bph14 carries a unique LRR domain that might function in recognition of the BPH insect invasion and activating the defense response
Bph14	Os03g0848700	LOC_Os03g63150	insect	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice	Expression of Bph14 activates the salicylic acid signaling pathway and induces callose deposition in phloem cells and trypsin inhibitor production after planthopper infestation, thus reducing the feeding, growth rate, and longevity of the BPH insects
Bph14	Os03g0848700	LOC_Os03g63150	seedling	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice	In this study, we cloned Bph14, a gene conferring resistance to BPH at seedling and maturity stages of the rice plant, using a map-base cloning approach
Bph14	Os03g0848700	LOC_Os03g63150	transcription factor	The Coiled-coil and Nucleotide Binding Domains of BROWN PLANTHOPPER RESISTANCE14 Function in Signaling and Resistance Against Planthopper in Rice.	Additionally, the resistance domains and FL BPH14 protein formed homo-complexes that interacted with transcription factors WRKY46 and WRKY72
Bph14	Os03g0848700	LOC_Os03g63150	resistance	The Coiled-coil and Nucleotide Binding Domains of BROWN PLANTHOPPER RESISTANCE14 Function in Signaling and Resistance Against Planthopper in Rice.	Here, we analyzed the functions of the domains of BPH14 to identify molecular mechanisms underpinning BPH14-mediated planthopper resistance
Bph14	Os03g0848700	LOC_Os03g63150	resistance	The Coiled-coil and Nucleotide Binding Domains of BROWN PLANTHOPPER RESISTANCE14 Function in Signaling and Resistance Against Planthopper in Rice.	The CC or NB domains alone or in combination (CC-NB [CN]) conferred a similar level of brown planthopper resistance to that of full-length (FL) BPH14
Bph14	Os03g0848700	LOC_Os03g63150	resistance	The Coiled-coil and Nucleotide Binding Domains of BROWN PLANTHOPPER RESISTANCE14 Function in Signaling and Resistance Against Planthopper in Rice.	Additionally, the resistance domains and FL BPH14 protein formed homo-complexes that interacted with transcription factors WRKY46 and WRKY72
Bph14	Os03g0848700	LOC_Os03g63150	brown planthopper	The Coiled-coil and Nucleotide Binding Domains of BROWN PLANTHOPPER RESISTANCE14 Function in Signaling and Resistance Against Planthopper in Rice.	The CC or NB domains alone or in combination (CC-NB [CN]) conferred a similar level of brown planthopper resistance to that of full-length (FL) BPH14
Bph14	Os03g0848700	LOC_Os03g63150	nitrogen	The control of the brown planthopper by the rice Bph14 gene is affected by nitrogen.	In this study,  Luoyou9348 (containing Bph14 and highly resistance to BPH) and Yangliangyou6 (without Bph14 and susceptible to BPH) were planted under varying nitrogen regimes (0 kg ha-1 , 90 kg ha-1 , 180 kg ha-1 ) to determine their effects on the resistance levels of the rice to BPH feeding
Bph14	Os03g0848700	LOC_Os03g63150	resistance	The control of the brown planthopper by the rice Bph14 gene is affected by nitrogen.	In this study,  Luoyou9348 (containing Bph14 and highly resistance to BPH) and Yangliangyou6 (without Bph14 and susceptible to BPH) were planted under varying nitrogen regimes (0 kg ha-1 , 90 kg ha-1 , 180 kg ha-1 ) to determine their effects on the resistance levels of the rice to BPH feeding
Bph14	Os03g0848700	LOC_Os03g63150	brown planthopper	The control of the brown planthopper by the rice Bph14 gene is affected by nitrogen.	The control of the brown planthopper by the rice Bph14 gene is affected by nitrogen.
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	resistance	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	resistance	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.	The indica rice cultivar ADR52 carries two BPH resistance genes, BPH26 (brown planthopper resistance 26) and BPH25
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	map-based cloning	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	map-based cloning	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.	Map-based cloning of BPH26 revealed that BPH26 encodes a coiled-coil-nucleotide-binding-site-leucine-rich repeat (CC-NBS-LRR) protein
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	brown planthopper	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	brown planthopper	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.	The indica rice cultivar ADR52 carries two BPH resistance genes, BPH26 (brown planthopper resistance 26) and BPH25
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	phloem	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.	BPH26 mediated sucking inhibition in the phloem sieve element
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	leaf	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	The BPH18 promoter::GUS transgenic plants exhibited strong GUS expression in the vascular bundles of the leaf sheath, especially in phloem cells where the BPH attacks
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	vascular bundle	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	The BPH18 promoter::GUS transgenic plants exhibited strong GUS expression in the vascular bundles of the leaf sheath, especially in phloem cells where the BPH attacks
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	resistance	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	resistance	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	However, these two genes have remarkable sequence differences and the independent NILs showed differential BPH resistance with different expression patterns of plant defense-related genes, indicating that BPH18 and BPH26 are functionally different alleles
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	map-based cloning	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	map-based cloning	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Map-based cloning and complementation test revealed that the BPH18 encodes CC-NBS-NBS-LRR protein
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	insect	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	brown planthopper	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	phloem	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	The BPH18 promoter::GUS transgenic plants exhibited strong GUS expression in the vascular bundles of the leaf sheath, especially in phloem cells where the BPH attacks
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	phloem	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	The BPH18 proteins were widely localized to the endo-membranes in a cell, including the endoplasmic reticulum, Golgi apparatus, trans-Golgi network, and prevacuolar compartments, suggesting that BPH18 may recognize the BPH invasion at endo-membranes in phloem cells
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	R protein	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Map-based cloning and complementation test revealed that the BPH18 encodes CC-NBS-NBS-LRR protein
BPH26|BPH18	Os12g0559400	LOC_Os12g37280	R protein	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	BPH18 has two NBS domains, unlike the typical NBS-LRR proteins
BPH29	Os06g0107800	LOC_Os06g01860	breeding	Map-based cloning and characterization of BPH29, a B3 domain-containing recessive gene conferring brown planthopper resistance in rice.	The cloning and characterization of BPH29 provides insights into molecular mechanisms of plant-insect interactions and should facilitate the breeding of rice host-resistant varieties
Bph32	Os06g0123200	LOC_Os06g03240	leaf	Bph32, a novel gene encoding an unknown SCR domain-containing protein, confers resistance against the brown planthopper in rice.	Expression analysis revealed that Bph32 was highly expressed in the leaf sheaths, where BPH primarily settles and feeds, at 2 and 24<U+2009>h after BPH infestation, suggesting that Bph32 may inhibit feeding in BPH
Bph32	Os06g0123200	LOC_Os06g03240	resistance	Bph32, a novel gene encoding an unknown SCR domain-containing protein, confers resistance against the brown planthopper in rice.	The transgenic introgression of Bph32 into a susceptible rice variety significantly improved resistance to BPH
Bph6	None	None	resistance	Bph6 encodes an exocyst-localized protein and confers broad resistance to planthoppers in rice.	Bph6 encodes an exocyst-localized protein and confers broad resistance to planthoppers in rice.
Bph6	None	None	cell wall	Bph6 encodes an exocyst-localized protein and confers broad resistance to planthoppers in rice.	Bph6 expression increases exocytosis and participates in cell wall maintenance and reinforcement
BPH9	None	None	salicylic acid	Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation.	BPH9 activates salicylic acid- and jasmonic acid-signaling pathways in rice plants and confers both antixenosis and antibiosis to BPH
BPH9	None	None	cell death	Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation.	BPH9 encodes a rare type of nucleotide-binding and leucine-rich repeat (NLR)-containing protein that localizes to the endomembrane system and causes a cell death phenotype
BPH9	None	None	jasmonic	Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation.	BPH9 activates salicylic acid- and jasmonic acid-signaling pathways in rice plants and confers both antixenosis and antibiosis to BPH
BPH9	None	None	jasmonic acid	Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation.	BPH9 activates salicylic acid- and jasmonic acid-signaling pathways in rice plants and confers both antixenosis and antibiosis to BPH
BPH9	None	None	resistance	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	The resulting Bph6 and Bph9 pyramided line LuoYang69 had stronger antixenotic and antibiosis effects on BPH and exhibited significantly enhanced resistance to BPH than near isogenic lines NIL-Bph6 and NIL-Bph9
BPH9	None	None	resistance	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	LuoYang69 derived hybrids, harboring heterozygous Bph6 and Bph9 genes, also conferred high level of resistance to BPH
BPH9	None	None	resistance	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	The development of Bph6 and Bph9 pyramided line LuoYang69 provides valuable resource to develop hybrid rice with highly and durable BPH resistance
BPH9	None	None	resistance	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	The identified Bph9 containing cultivars can be used as new sources for BPH resistance breeding programs
BPH9	None	None	development	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.
BPH9	None	None	development	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	The development of Bph6 and Bph9 pyramided line LuoYang69 provides valuable resource to develop hybrid rice with highly and durable BPH resistance
BPH9	None	None	development	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	The development of functional markers will promote MAS of Bph9
BPH9	None	None	breeding	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	The identified Bph9 containing cultivars can be used as new sources for BPH resistance breeding programs
Bphi008a	Os06g0493100	LOC_Os06g29730	ethylene	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding	Measurement of the expression levels of ethylene synthases and of ethylene emissions showed that BPH feeding rapidly initiated the ethylene signaling pathway and up-regulated Bphi008a transcript levels after 6 to 96 h of feeding
Bphi008a	Os06g0493100	LOC_Os06g29730	ethylene	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding	In contrast, blocking ethylene transduction (using 1-methylcyclopropene) reduced Bphi008a transcript levels in wild-type plants fed upon by BPH
Bphi008a	Os06g0493100	LOC_Os06g29730	ethylene	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding
Bphi008a	Os06g0493100	LOC_Os06g29730	transcription factor	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding	Finally, yeast two-hybrid screening results showed that Bphi008a is able to interact with a b-ZIP transcription factor (OsbZIP60) and a RNA polymerase polypeptide (SDRP)
Bphi008a	Os06g0493100	LOC_Os06g29730	brown planthopper	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding	We examined ways in which the Brown planthopper induced008a (Bphi008a; AY256682) gene of rice (Oryza sativa) enhances the plant's resistance to a specialist herbivore, the brown planthopper (BPH; Nilaparvata lugens)
Bphi008a	Os06g0493100	LOC_Os06g29730	brown planthopper	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	dwarf	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone	The brd2 locus contains a single base deletion in the coding region of Dim/dwf1, a homolog of Arabidopsis thaliana DIMINUTO/DWARF1 (DIM/DWF1)
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	seed	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone	Overproduction and repression of Dim/dwf1 resulted in contrasting phenotypes, with repressors mimicking the brd2 phenotype and overproducers having large stature with increased numbers of flowers and seeds
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	brassinosteroid	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	flower	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone	Overproduction and repression of Dim/dwf1 resulted in contrasting phenotypes, with repressors mimicking the brd2 phenotype and overproducers having large stature with increased numbers of flowers and seeds
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	 BR 	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone	Based on these observations, we discuss an alternative BR biosynthetic pathway that produces DS when Dim/dwf1 is defective
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	dwarf	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	shoot	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	LHDD10 was constitutively expressed in various tissues, but more so in shoot apices and panicles
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	map-based cloning	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	We isolated lhdd10 by map-based cloning; it encoded a putative FAD-linked oxidoreductase protein (a brassinosteroid biosynthetic gene) that localized to the nucleus
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	dwarf	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	In this study, we characterized a late heading, dwarf mutant known as lhdd10 selected following ethyl methane sulfonate (EMS)-treatment of ssp
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	height	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	brassinosteroid	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	brassinosteroid	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	We isolated lhdd10 by map-based cloning; it encoded a putative FAD-linked oxidoreductase protein (a brassinosteroid biosynthetic gene) that localized to the nucleus
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	heading date	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	Our data showed that lhdd10 influences heading date by controlling the expression of heading date regulators, such as OsMADS50 in both LD and SD conditions
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	Brassinosteroid	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	Brassinosteroid	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	We isolated lhdd10 by map-based cloning; it encoded a putative FAD-linked oxidoreductase protein (a brassinosteroid biosynthetic gene) that localized to the nucleus
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	plant height	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	nucleus	Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).	We isolated lhdd10 by map-based cloning; it encoded a putative FAD-linked oxidoreductase protein (a brassinosteroid biosynthetic gene) that localized to the nucleus
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	seedlings	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 The ltbsg1 seedlings had a lower endogenous BR level and could be restored to the phenotype of wild type by exogenous BR
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	panicle	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 This study demonstrated that LTBSG1 could play a new role in regulating panicle and grain development by BR biosynthetic pathway
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 In the present study, a mutant named ltbsg1 (longer top branch and shorter grain 1) was isolated from the cultivar &amp;ldquo;Zhenong 34&amp;rdquo; (Oryza sativa L
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 The histocytological analysis indicated that the elongated top branch and shorter grain of mutant ltbsg1 were caused from the defects of cell elongation
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 The LTBSG1 knock-out lines showed similar phenotype defects as mutant ltbsg1, which confirmed that LTBSG1 was responsible for top branch elongation and grain size reduction
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 This study demonstrated that LTBSG1 could play a new role in regulating panicle and grain development by BR biosynthetic pathway
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	development	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 This study demonstrated that LTBSG1 could play a new role in regulating panicle and grain development by BR biosynthetic pathway
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain size	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 The LTBSG1 knock-out lines showed similar phenotype defects as mutant ltbsg1, which confirmed that LTBSG1 was responsible for top branch elongation and grain size reduction
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	cell elongation	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 The histocytological analysis indicated that the elongated top branch and shorter grain of mutant ltbsg1 were caused from the defects of cell elongation
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	nucleus	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 LTBSG1 was constitutively expressed and the protein was widely localized in chloroplast, nucleus and cytomembrane
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	brassinosteroid	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 The ltbsg1 gene in mutant revealed a single nucleotide substitution (G-A) in the exon 2 of LOC_Os10g25780, causing an amino acid variation (Glycine-Arginine) in the FAD (Flavin-adenine dinucleotide)-binding domain of delta (24)-sterol reductase, which was involved in the brassinosteroid (BR) biosynthesis
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	 BR 	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 The ltbsg1 seedlings had a lower endogenous BR level and could be restored to the phenotype of wild type by exogenous BR
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	 BR 	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 This study demonstrated that LTBSG1 could play a new role in regulating panicle and grain development by BR biosynthetic pathway
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	Brassinosteroid	LTBSG1, a New Allele of BRD2, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	 The ltbsg1 gene in mutant revealed a single nucleotide substitution (G-A) in the exon 2 of LOC_Os10g25780, causing an amino acid variation (Glycine-Arginine) in the FAD (Flavin-adenine dinucleotide)-binding domain of delta (24)-sterol reductase, which was involved in the brassinosteroid (BR) biosynthesis
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	growth	Natural variation of the BRD2 allele affects plant height and grain size in rice.	 In summary, the current study has identified a new BRD2 allele, which facilitated the further research on the molecular mechanism of this gene on regulating growth and development
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	development	Natural variation of the BRD2 allele affects plant height and grain size in rice.	 In summary, the current study has identified a new BRD2 allele, which facilitated the further research on the molecular mechanism of this gene on regulating growth and development
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain	Natural variation of the BRD2 allele affects plant height and grain size in rice.	Natural variation of the BRD2 allele affects plant height and grain size in rice.
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain	Natural variation of the BRD2 allele affects plant height and grain size in rice.	The zqdm1 identified from a rice mutant is a novel allele of BRD2 and is responsible for regulating rice plant height, grain size and appearance, which has possibilities on improving rice quality
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain	Natural variation of the BRD2 allele affects plant height and grain size in rice.	 Complementation tests have confirmed that 369-bp insertion in BRD2 was responsible for the plant height and grain size changing in the zqdm1 mutant
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain	Natural variation of the BRD2 allele affects plant height and grain size in rice.	 Over-expression of BRD2 driven by different promoters into indica rice variety Jiafuzhan (JFZ) results in slender grains, suggesting its function on regulating grain shape
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain size	Natural variation of the BRD2 allele affects plant height and grain size in rice.	Natural variation of the BRD2 allele affects plant height and grain size in rice.
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain size	Natural variation of the BRD2 allele affects plant height and grain size in rice.	The zqdm1 identified from a rice mutant is a novel allele of BRD2 and is responsible for regulating rice plant height, grain size and appearance, which has possibilities on improving rice quality
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain size	Natural variation of the BRD2 allele affects plant height and grain size in rice.	 Complementation tests have confirmed that 369-bp insertion in BRD2 was responsible for the plant height and grain size changing in the zqdm1 mutant
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	quality	Natural variation of the BRD2 allele affects plant height and grain size in rice.	The zqdm1 identified from a rice mutant is a novel allele of BRD2 and is responsible for regulating rice plant height, grain size and appearance, which has possibilities on improving rice quality
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	height	Natural variation of the BRD2 allele affects plant height and grain size in rice.	Natural variation of the BRD2 allele affects plant height and grain size in rice.
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	height	Natural variation of the BRD2 allele affects plant height and grain size in rice.	 Complementation tests have confirmed that 369-bp insertion in BRD2 was responsible for the plant height and grain size changing in the zqdm1 mutant
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	plant height	Natural variation of the BRD2 allele affects plant height and grain size in rice.	Natural variation of the BRD2 allele affects plant height and grain size in rice.
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	plant height	Natural variation of the BRD2 allele affects plant height and grain size in rice.	The zqdm1 identified from a rice mutant is a novel allele of BRD2 and is responsible for regulating rice plant height, grain size and appearance, which has possibilities on improving rice quality
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	plant height	Natural variation of the BRD2 allele affects plant height and grain size in rice.	 Complementation tests have confirmed that 369-bp insertion in BRD2 was responsible for the plant height and grain size changing in the zqdm1 mutant
BRD2|DIM|DWF1|LHDD10|LTBSG1	Os10g0397400	LOC_Os10g25780	grain shape	Natural variation of the BRD2 allele affects plant height and grain size in rice.	 Over-expression of BRD2 driven by different promoters into indica rice variety Jiafuzhan (JFZ) results in slender grains, suggesting its function on regulating grain shape
BRHIS1	Os08g0180300	LOC_Os08g08220	ATPase	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	Here, we show that a rice SWI/SNF2 ATPase gene BRHIS1 is downregulated in response to the rice blast fungal pathogen or to the defense-priming-inducing compound BIT (1,2-benzisothiazol-3(2h)-one,1, 1-dioxide)
BRHIS1	Os08g0180300	LOC_Os08g08220	defense	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	Our results show that rice disease defense genes are initially organized in an expression-ready state by specific monoubiquitination of H2A and H2B variants deposited on their promoter regions, but are kept suppressed by the BRHIS1 complex, facilitating the prompt initiation of innate immune responses in response to infection through the stringent regulation of BRHIS1
BRHIS1	Os08g0180300	LOC_Os08g08220	disease	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	Our results show that rice disease defense genes are initially organized in an expression-ready state by specific monoubiquitination of H2A and H2B variants deposited on their promoter regions, but are kept suppressed by the BRHIS1 complex, facilitating the prompt initiation of innate immune responses in response to infection through the stringent regulation of BRHIS1
BRHIS1	Os08g0180300	LOC_Os08g08220	blast	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	Here, we show that a rice SWI/SNF2 ATPase gene BRHIS1 is downregulated in response to the rice blast fungal pathogen or to the defense-priming-inducing compound BIT (1,2-benzisothiazol-3(2h)-one,1, 1-dioxide)
BRHIS1	Os08g0180300	LOC_Os08g08220	immunity	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.
BRHIS1	Os08g0180300	LOC_Os08g08220	innate immunity	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.
BRHIS1	Os08g0180300	LOC_Os08g08220	immune response	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	Our results show that rice disease defense genes are initially organized in an expression-ready state by specific monoubiquitination of H2A and H2B variants deposited on their promoter regions, but are kept suppressed by the BRHIS1 complex, facilitating the prompt initiation of innate immune responses in response to infection through the stringent regulation of BRHIS1
BRK1	Os07g0508500	LOC_Os07g32480	meiosis	BRK1, a Bub1-related kinase, is essential for generating proper tension between homologous kinetochores at metaphase I of rice meiosis	Although the homologs can faithfully separate from each other at the end of meiosis I, the uncorrected merotelic attachment of paired sister kinetochores at the early stage of metaphase I in brk1 reduces the tension across homologous kinetochores, causes the metaphase I spindle to be aberrantly shaped, and subsequently affects the synchronicity of homolog separation at the onset of anaphase I
BRK1	Os07g0508500	LOC_Os07g32480	meiosis	BRK1, a Bub1-related kinase, is essential for generating proper tension between homologous kinetochores at metaphase I of rice meiosis	BRK1, a Bub1-related kinase, is essential for generating proper tension between homologous kinetochores at metaphase I of rice meiosis
BRK1	Os07g0508500	LOC_Os07g32480	sterile	BRK1, a Bub1-related kinase, is essential for generating proper tension between homologous kinetochores at metaphase I of rice meiosis	The brk1 mutants are sterile due to the precocious separation of sister chromatids at the onset of anaphase I
BS1|DR	Os02g0250400	LOC_Os02g15230	cell wall	Control of secondary cell wall patterning involves xylan deacetylation by a GDSL esterase.	Cell wall composition, detailed xylan structure characterization and enzyme kinetics and activity assays on acetylated sugars and xylooligosaccharides demonstrate that BS1 is an esterase that cleaves acetyl moieties from the xylan backbone at O-2 and O-3 positions of xylopyranosyl residues
BS1|DR	Os02g0250400	LOC_Os02g15230	leaf	The DROOPING LEAF (DR) gene encoding GDSL esterase is involved in silica deposition in rice (Oryza sativa L.)	This study suggests that the dr gene is involved in the regulation of silica deposition and that disruption of silica processes lead to drooping leaf phenotypes
BS1|DR	Os02g0250400	LOC_Os02g15230	height	The DROOPING LEAF (DR) gene encoding GDSL esterase is involved in silica deposition in rice (Oryza sativa L.)	Compared with the wild type, dr plants exhibited drooping leaves accompanied by a small midrib, short panicle, and reduced plant height
BS1|DR	Os02g0250400	LOC_Os02g15230	plant height	The DROOPING LEAF (DR) gene encoding GDSL esterase is involved in silica deposition in rice (Oryza sativa L.)	Compared with the wild type, dr plants exhibited drooping leaves accompanied by a small midrib, short panicle, and reduced plant height
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	transcription factor	A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.	This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H2O2 degradation and enhanced disease resistance
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	resistance	A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.	This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H2O2 degradation and enhanced disease resistance
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	disease	A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.	This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H2O2 degradation and enhanced disease resistance
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	disease resistance	A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.	This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H2O2 degradation and enhanced disease resistance
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	transcription factor	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	seed	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	seed	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The seed germination is highly inhibited in ZFP36 overexpression plants under ABA treatment, while an RNA interference (RNAi) mutant of OsLEA5 rice seeds were less sensitive to ABA, and exogenous ASC (ascorbate acid) could alleviate the inhibition induced by ABA
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	seed	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	Thus, our conclusion is that OsAPX1 is a direct target of ZFP36 and OsLEA5 could interact with ZFP36 to co-regulate ABA-inhibited seed germination by controlling the expression of OsAPX1
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	seed germination	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	seed germination	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The seed germination is highly inhibited in ZFP36 overexpression plants under ABA treatment, while an RNA interference (RNAi) mutant of OsLEA5 rice seeds were less sensitive to ABA, and exogenous ASC (ascorbate acid) could alleviate the inhibition induced by ABA
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	seed germination	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	Thus, our conclusion is that OsAPX1 is a direct target of ZFP36 and OsLEA5 could interact with ZFP36 to co-regulate ABA-inhibited seed germination by controlling the expression of OsAPX1
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	ABA	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The seed germination is highly inhibited in ZFP36 overexpression plants under ABA treatment, while an RNA interference (RNAi) mutant of OsLEA5 rice seeds were less sensitive to ABA, and exogenous ASC (ascorbate acid) could alleviate the inhibition induced by ABA
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	zinc	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	ABA	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The seed germination is highly inhibited in ZFP36 overexpression plants under ABA treatment, while an RNA interference (RNAi) mutant of OsLEA5 rice seeds were less sensitive to ABA, and exogenous ASC (ascorbate acid) could alleviate the inhibition induced by ABA
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	resistance	New insights into bsr-d1-mediated broad-spectrum resistance to rice blast	oryzae-induced expression of Bsr-d1 RNA and degradation of hydrogen peroxide to achieve resistance to M
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	resistance	New insights into bsr-d1-mediated broad-spectrum resistance to rice blast	However, the global effect of biological process and molecular function on blast resistance mediated by Bsr-d1 remains unknown
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	resistance	New insights into bsr-d1-mediated broad-spectrum resistance to rice blast	Furthermore, we identified a novel peroxidase-encoding gene, Perox3, as a new BSR-D1 target gene that reduces resistance to M
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	salicylic acid	New insights into bsr-d1-mediated broad-spectrum resistance to rice blast	We further found that BSR-D1 indirectly regulates salicylic acid biosynthesis, metabolism, and signal transduction downstream of the activation of H2 O2 signalling in the bsr-d1-mediated immune response
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	blast	New insights into bsr-d1-mediated broad-spectrum resistance to rice blast	However, the global effect of biological process and molecular function on blast resistance mediated by Bsr-d1 remains unknown
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	immune response	New insights into bsr-d1-mediated broad-spectrum resistance to rice blast	We further found that BSR-D1 indirectly regulates salicylic acid biosynthesis, metabolism, and signal transduction downstream of the activation of H2 O2 signalling in the bsr-d1-mediated immune response
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	blast resistance	New insights into bsr-d1-mediated broad-spectrum resistance to rice blast	However, the global effect of biological process and molecular function on blast resistance mediated by Bsr-d1 remains unknown
BSR-D1|ZFP36	Os03g0437200	LOC_Os03g32230	signal transduction	New insights into bsr-d1-mediated broad-spectrum resistance to rice blast	We further found that BSR-D1 indirectly regulates salicylic acid biosynthesis, metabolism, and signal transduction downstream of the activation of H2 O2 signalling in the bsr-d1-mediated immune response
BSR-K1	Os10g0548200	None	cytoplasm	Loss of function of a rice TPR-domain RNA-binding protein confers broad-spectrum disease resistance	Together, these results suggest that BSR-K1 functions in the cytoplasm.
BSR-K1	Os10g0548200	None	broad-spectrum disease resistance	Loss of function of a rice TPR-domain RNA-binding protein confers broad-spectrum disease resistance	We conclude that the bsr-k1 mutant clearly confers broad-spectrum disease resistance.
BSR-K1	Os10g0548200	None	immunity	Loss of function of a rice TPR-domain RNA-binding protein confers broad-spectrum disease resistance	Thus, BSR-K1 regulates plant immunity through a mechanism different from those of previously identified RNA-binding proteins
BSR1	Os09g0533600	LOC_Os09g36320	resistance	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	Importantly, tyrosine phosphorylation of BSR1 was critical for proper localization of BSR1 in rice cells and played a crucial role in BSR1-mediated resistance to multiple diseases, as evidenced by compromised disease resistance in transgenic plants overexpressing a mutant BSR1 in which Tyr-63 was substituted with Ala
BSR1	Os09g0533600	LOC_Os09g36320	resistance	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	Overall, our data indicate that BSR1 is a nonreceptor dual-specificity kinase and that both tyrosine and serine/threonine kinase activities are critical for the normal functioning of BSR1 in the resistance to multiple pathogens
BSR1	Os09g0533600	LOC_Os09g36320	disease	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	Importantly, tyrosine phosphorylation of BSR1 was critical for proper localization of BSR1 in rice cells and played a crucial role in BSR1-mediated resistance to multiple diseases, as evidenced by compromised disease resistance in transgenic plants overexpressing a mutant BSR1 in which Tyr-63 was substituted with Ala
BSR1	Os09g0533600	LOC_Os09g36320	disease resistance	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	Importantly, tyrosine phosphorylation of BSR1 was critical for proper localization of BSR1 in rice cells and played a crucial role in BSR1-mediated resistance to multiple diseases, as evidenced by compromised disease resistance in transgenic plants overexpressing a mutant BSR1 in which Tyr-63 was substituted with Ala
BSR1	Os09g0533600	LOC_Os09g36320	Kinase	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	In the present study, we report that BSR1 is a functional protein kinase that autophosphorylates and transphosphorylates an artificial substrate, in vitro
BSR1	Os09g0533600	LOC_Os09g36320	Kinase	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	Although BSR1 is classified as a serine/threonine kinase, it was shown to autophosphorylate on tyrosine as well as on serine/threonine residues when expressed in bacteria, demonstrating that it is a dual-specificity kinase
BSR1	Os09g0533600	LOC_Os09g36320	Kinase	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	Overall, our data indicate that BSR1 is a nonreceptor dual-specificity kinase and that both tyrosine and serine/threonine kinase activities are critical for the normal functioning of BSR1 in the resistance to multiple pathogens
BSR1	Os09g0533600	LOC_Os09g36320	protein kinase	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	In the present study, we report that BSR1 is a functional protein kinase that autophosphorylates and transphosphorylates an artificial substrate, in vitro
BSR1	Os09g0533600	LOC_Os09g36320	leaf	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Here we analyzed immune responses using rice suspension-cultured cells and sliced leaf blades overexpressing BSR1
BSR1	Os09g0533600	LOC_Os09g36320	leaf	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	BSR1 overexpression enhances MAMP-triggered production of hydrogen peroxide (H2O2) and transcriptional activation of the defense-related gene in cultured cells and leaf strips
BSR1	Os09g0533600	LOC_Os09g36320	resistance	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.
BSR1	Os09g0533600	LOC_Os09g36320	disease	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.
BSR1	Os09g0533600	LOC_Os09g36320	disease resistance	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.
BSR1	Os09g0533600	LOC_Os09g36320	oxidative	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Furthermore, the co-cultivation of leaves with conidia of the blast fungus revealed that BSR1 overexpression allowed host plants to produce detectable oxidative bursts against compatible pathogens
BSR1	Os09g0533600	LOC_Os09g36320	blast	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Furthermore, the co-cultivation of leaves with conidia of the blast fungus revealed that BSR1 overexpression allowed host plants to produce detectable oxidative bursts against compatible pathogens
BSR1	Os09g0533600	LOC_Os09g36320	immunity	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	However, it remains unclear how overexpressed BSR1 reinforces plant immunity
BSR1	Os09g0533600	LOC_Os09g36320	immune response	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.
BSR1	Os09g0533600	LOC_Os09g36320	immune response	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Here we analyzed immune responses using rice suspension-cultured cells and sliced leaf blades overexpressing BSR1
BSR1	Os09g0533600	LOC_Os09g36320	immune response	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	BSR1 was also involved in the immune responses triggered by peptidoglycan and lipopolysaccharide
BSR1	Os09g0533600	LOC_Os09g36320	broad-spectrum disease resistance	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Broad-Spectrum Disease Resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.
BSR1	Os09g0533600	LOC_Os09g36320	resistance	Overexpressed BSR1-Mediated Enhancement of Disease Resistance Depends on the MAMP-Recognition System	Overexpression of BSR1 confers strong resistance against fungal and bacterial pathogens
BSR1	Os09g0533600	LOC_Os09g36320	resistance	Overexpressed BSR1-Mediated Enhancement of Disease Resistance Depends on the MAMP-Recognition System	In the background of BSR1 overaccumulation, the knockout of OsCERK1 nearly abolished the enhancement of blast resistance
BSR1	Os09g0533600	LOC_Os09g36320	blast	Overexpressed BSR1-Mediated Enhancement of Disease Resistance Depends on the MAMP-Recognition System	In the background of BSR1 overaccumulation, the knockout of OsCERK1 nearly abolished the enhancement of blast resistance
BSR1	Os09g0533600	LOC_Os09g36320	immune response	Overexpressed BSR1-Mediated Enhancement of Disease Resistance Depends on the MAMP-Recognition System	Our recent study revealed that MAMP-triggered immune responses are mediated by BSR1 in wild-type rice and are hyperactivated in BSR1-overexpressing rice
BSR1	Os09g0533600	LOC_Os09g36320	blast resistance	Overexpressed BSR1-Mediated Enhancement of Disease Resistance Depends on the MAMP-Recognition System	In the background of BSR1 overaccumulation, the knockout of OsCERK1 nearly abolished the enhancement of blast resistance
BSR2	Os08g0547300	LOC_Os08g43390	growth	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.
BSR2	Os08g0547300	LOC_Os08g43390	growth	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	Both Arabidopsis and rice plants overexpressing BSR2 had slower growth and produced longer seeds than wild-type control plants
BSR2	Os08g0547300	LOC_Os08g43390	growth	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	These results indicate that BSR2 is associated with disease resistance, growth rate and seed size in rice and suggest that its function is evolutionarily conserved in both monocot rice and dicot Arabidopsis
BSR2	Os08g0547300	LOC_Os08g43390	resistance	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.
BSR2	Os08g0547300	LOC_Os08g43390	resistance	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	When overexpressed in rice, BSR2 also conferred resistance to two R
BSR2	Os08g0547300	LOC_Os08g43390	seed	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.
BSR2	Os08g0547300	LOC_Os08g43390	seed	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	These results indicate that BSR2 is associated with disease resistance, growth rate and seed size in rice and suggest that its function is evolutionarily conserved in both monocot rice and dicot Arabidopsis
BSR2	Os08g0547300	LOC_Os08g43390	disease	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	These results indicate that BSR2 is associated with disease resistance, growth rate and seed size in rice and suggest that its function is evolutionarily conserved in both monocot rice and dicot Arabidopsis
BSR2	Os08g0547300	LOC_Os08g43390	disease resistance	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	These results indicate that BSR2 is associated with disease resistance, growth rate and seed size in rice and suggest that its function is evolutionarily conserved in both monocot rice and dicot Arabidopsis
BSR2	Os08g0547300	LOC_Os08g43390	seed size	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.
BSR2	Os08g0547300	LOC_Os08g43390	seed size	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	These results indicate that BSR2 is associated with disease resistance, growth rate and seed size in rice and suggest that its function is evolutionarily conserved in both monocot rice and dicot Arabidopsis
BSR2	Os08g0547300	LOC_Os08g43390	growth rate	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	These results indicate that BSR2 is associated with disease resistance, growth rate and seed size in rice and suggest that its function is evolutionarily conserved in both monocot rice and dicot Arabidopsis
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	BR signaling	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 protein is a positive regulator of BR response: it controls bending of the lamina joint in rice and it is a novel primary response gene that participates in two BR signaling pathways through OsBRI1 and RGA1
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	grain	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	Rice plants overexpressing BU1 (BU1:OX) showed enhanced bending of the lamina joint, increased grain size, and resistance to brassinazole, an inhibitor of BR biosynthesis
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	brassinosteroid	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice	Consistently, transcriptome analyses revealed that SDG725 depletion results in down-regulation by more than two-fold of over 1000 genes, including D11, BRI1 and BU1, which are known to be involved in brassinosteroid biosynthesis or signaling pathways
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	grain size	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	Rice plants overexpressing BU1 (BU1:OX) showed enhanced bending of the lamina joint, increased grain size, and resistance to brassinazole, an inhibitor of BR biosynthesis
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	BR	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	Rice plants overexpressing BU1 (BU1:OX) showed enhanced bending of the lamina joint, increased grain size, and resistance to brassinazole, an inhibitor of BR biosynthesis
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	BR	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	In addition, compared to the wild type, the induction of BU1 by exogenous brassinolide did not require de novo protein synthesis and it was weaker in a BR receptor mutant OsbriI (Oryza sativa brassinosteroid insensitive1, d61) and a rice G protein alpha subunit (RGA1) mutant d1
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	BR	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 protein is a positive regulator of BR response: it controls bending of the lamina joint in rice and it is a novel primary response gene that participates in two BR signaling pathways through OsBRI1 and RGA1
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	BR	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 may participate in some other unknown processes modulated by BR in rice
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	lamina	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	Rice plants overexpressing BU1 (BU1:OX) showed enhanced bending of the lamina joint, increased grain size, and resistance to brassinazole, an inhibitor of BR biosynthesis
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	lamina	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 protein is a positive regulator of BR response: it controls bending of the lamina joint in rice and it is a novel primary response gene that participates in two BR signaling pathways through OsBRI1 and RGA1
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	lamina	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	Furthermore, expression analyses showed that BU1 is expressed in several organs including lamina joint, phloem, and epithelial cells in embryos
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	erect	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	In contrast to BU1:OX, RNAi plants designed to repress both BU1 and its homologs displayed erect leaves
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	brassinosteroid	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	Here, we describe a novel BR-induced rice gene BRASSINOSTEROID UPREGULATED1 (BU1), encoding a helix-loop-helix protein
BU1|OsbHLH174	Os06g0226500	LOC_Os06g12210	brassinosteroid	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	In addition, compared to the wild type, the induction of BU1 by exogenous brassinolide did not require de novo protein synthesis and it was weaker in a BR receptor mutant OsbriI (Oryza sativa brassinosteroid insensitive1, d61) and a rice G protein alpha subunit (RGA1) mutant d1
BZ1	Os08g0374800	LOC_Os08g28730	leaf	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.
BZ1	Os08g0374800	LOC_Os08g28730	leaf	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Molecular and biochemical analysis revealed that BZ1 encodes a functional UDP-galactose/glucose epimerase (UGE) and is ubiquitously expressed with higher expression in stem and leaf tissues
BZ1	Os08g0374800	LOC_Os08g28730	chloroplast	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Lipid profiling assay showed that the amount of monogalactosyldiacylglycerols (MGDG), a major chloroplast membrane glycolipid, was significantly decreased in bz1
BZ1	Os08g0374800	LOC_Os08g28730	chloroplast	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Taken together, these results strongly demonstrate that BZ1 participates in UDP-galactose supply for the sugar chains biosynthesis of AGPs and MGDG, which thereby, respectively, results in altered cell wall and abnormal chloroplast development
BZ1	Os08g0374800	LOC_Os08g28730	stem	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Molecular and biochemical analysis revealed that BZ1 encodes a functional UDP-galactose/glucose epimerase (UGE) and is ubiquitously expressed with higher expression in stem and leaf tissues
BZ1	Os08g0374800	LOC_Os08g28730	growth	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Due to inferior mechanical strength and reduced photosynthesis, bz1 plants displayed detrimental agronomic traits, whereas BZ1 overexpressing lines showed enhanced plant growth
BZ1	Os08g0374800	LOC_Os08g28730	development	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Taken together, these results strongly demonstrate that BZ1 participates in UDP-galactose supply for the sugar chains biosynthesis of AGPs and MGDG, which thereby, respectively, results in altered cell wall and abnormal chloroplast development
BZ1	Os08g0374800	LOC_Os08g28730	photosynthesis	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Transcriptome analysis of stems and leaves further showed that numerous key genes involved in AGPs biosynthesis and photosynthesis metabolism were substantially suppressed in bz1
BZ1	Os08g0374800	LOC_Os08g28730	breeding	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	CONCLUSIONS: Our finding identifies BZ1 as a dual-targeting UGE protein for glycosylation of AGPs and MGDG and suggests a strategy for breeding robust elite  crops
BZ1	Os08g0374800	LOC_Os08g28730	plant growth	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Due to inferior mechanical strength and reduced photosynthesis, bz1 plants displayed detrimental agronomic traits, whereas BZ1 overexpressing lines showed enhanced plant growth
BZ1	Os08g0374800	LOC_Os08g28730	cellulose	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Multiple techniques analyses, including immunoblots, immuno-gold, and cryogenic scanning electron microscopy, demonstrated a significantly impaired glycosylation of arabinogalactan proteins (AGPs) and disordered cellulose microfibril deposition in bz1
BZ1	Os08g0374800	LOC_Os08g28730	cell wall	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Taken together, these results strongly demonstrate that BZ1 participates in UDP-galactose supply for the sugar chains biosynthesis of AGPs and MGDG, which thereby, respectively, results in altered cell wall and abnormal chloroplast development
BZ1	Os08g0374800	LOC_Os08g28730	chloroplast development	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Taken together, these results strongly demonstrate that BZ1 participates in UDP-galactose supply for the sugar chains biosynthesis of AGPs and MGDG, which thereby, respectively, results in altered cell wall and abnormal chloroplast development
BZ1	Os08g0374800	LOC_Os08g28730	sugar	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and  Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Taken together, these results strongly demonstrate that BZ1 participates in UDP-galactose supply for the sugar chains biosynthesis of AGPs and MGDG, which thereby, respectively, results in altered cell wall and abnormal chloroplast development
BZ1	Os08g0374800	LOC_Os08g28730	leaf color	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color
BZ1	Os08g0374800	LOC_Os08g28730	glycosylation	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color	The Rice BZ1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color
C3H12	Os01g0917400	LOC_Os01g68860	jasmonic	A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease	Activation of C3H12 partially enhanced resistance to Xoo, accompanied by the accumulation of jasmonic acid (JA) and induced expression of JA signaling genes in rice
C3H12	Os01g0917400	LOC_Os01g68860	xoo	A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease	These results suggest that C3H12, as a nucleic acid-binding protein, positively and quantitatively regulates rice resistance to Xoo and that its function is likely associated with the JA-dependent pathway
C3H12	Os01g0917400	LOC_Os01g68860	disease resistance	A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease	C3H12 colocalized with a minor disease resistance quantitative trait locus to Xoo, and the enhanced resistance of randomly chosen plants in the quantitative trait locus mapping population correlated with an increased expression level of C3H12
C3H12	Os01g0917400	LOC_Os01g68860	disease	A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease	C3H12 colocalized with a minor disease resistance quantitative trait locus to Xoo, and the enhanced resistance of randomly chosen plants in the quantitative trait locus mapping population correlated with an increased expression level of C3H12
C3H12	Os01g0917400	LOC_Os01g68860	ja	A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease	Activation of C3H12 partially enhanced resistance to Xoo, accompanied by the accumulation of jasmonic acid (JA) and induced expression of JA signaling genes in rice
C3H12	Os01g0917400	LOC_Os01g68860	ja	A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease	In contrast, knockout or suppression of C3H12 resulted in partially increased susceptibility to Xoo, accompanied by decreased levels of JA and expression of JA signaling genes in rice
C3H12	Os01g0917400	LOC_Os01g68860	jasmonic acid	A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease	Activation of C3H12 partially enhanced resistance to Xoo, accompanied by the accumulation of jasmonic acid (JA) and induced expression of JA signaling genes in rice
CAL2	Os04g0522100	LOC_Os04g44130	root	Overexpression of a Defensin-Like Gene CAL2 Enhances Cadmium Accumulation in Plants.	A promoter-GUS assay revealed that CAL2 is expressed in root tips
CAL2	Os04g0522100	LOC_Os04g44130	tolerance	Overexpression of a Defensin-Like Gene CAL2 Enhances Cadmium Accumulation in Plants.	Heterologous expression of CAL2 enhanced Cd sensitivity in Arabidopsis, whereas overexpression of CAL2 had no effect on Cd tolerance in rice
CAL2	Os04g0522100	LOC_Os04g44130	cell wall	Overexpression of a Defensin-Like Gene CAL2 Enhances Cadmium Accumulation in Plants.	Stable expression of the CAL2-mRFP fusion protein indicated that CAL2 is also localized in the cell walls
CAL2	Os04g0522100	LOC_Os04g44130	cadmium	Overexpression of a Defensin-Like Gene CAL2 Enhances Cadmium Accumulation in Plants.	Overexpression of a Defensin-Like Gene CAL2 Enhances Cadmium Accumulation in Plants.
CAL2	Os04g0522100	LOC_Os04g44130	cadmium accumulation	Overexpression of a Defensin-Like Gene CAL2 Enhances Cadmium Accumulation in Plants.	Overexpression of a Defensin-Like Gene CAL2 Enhances Cadmium Accumulation in Plants.
CAP1	Os02g0141300	LOC_Os02g04840	grain	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	The cap1 heterozygous plant produced equal numbers of normal and collapsed abnormal grains
CAP1	Os02g0141300	LOC_Os02g04840	grain	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	A wild-type genomic DNA segment containing CAP1 restored mutants to normal pollen grains
CAP1	Os02g0141300	LOC_Os02g04840	cell wall	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	Based on the metabolic pathway of l-arabinose, cap1 pollen phenotype may have been caused by toxic accumulation of l-arabinose or by inhibition of cell wall metabolism due to the lack of UDP-l-arabinose derived from l-arabinose 1-phosphate
CAP1	Os02g0141300	LOC_Os02g04840	growth	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	Genetic analysis of crosses revealed that the cap1 mutation did not affect female reproduction or vegetative growth
CAP1	Os02g0141300	LOC_Os02g04840	anther	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	During rice pollen development, CAP1 was preferentially expressed in anthers at the bicellular pollen stage, and the effects of the cap1 mutation were mainly detected at this stage
CAP1	Os02g0141300	LOC_Os02g04840	pollen	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	We isolated a pollen-defective mutant, collapsed abnormal pollen1 (cap1), from Tos17 insertional mutant lines of rice (Oryza sativa)
CAP1	Os02g0141300	LOC_Os02g04840	pollen	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	A wild-type genomic DNA segment containing CAP1 restored mutants to normal pollen grains
CAP1	Os02g0141300	LOC_Os02g04840	pollen	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	During rice pollen development, CAP1 was preferentially expressed in anthers at the bicellular pollen stage, and the effects of the cap1 mutation were mainly detected at this stage
CAP1	Os02g0141300	LOC_Os02g04840	pollen	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	Based on the metabolic pathway of l-arabinose, cap1 pollen phenotype may have been caused by toxic accumulation of l-arabinose or by inhibition of cell wall metabolism due to the lack of UDP-l-arabinose derived from l-arabinose 1-phosphate
CAP1	Os02g0141300	LOC_Os02g04840	pollen	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	Our results suggested that CAP1 and related genes are critical for pollen development in both monocotyledonous and dicotyledonous plants
CAP1	Os02g0141300	LOC_Os02g04840	vegetative	Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice	Genetic analysis of crosses revealed that the cap1 mutation did not affect female reproduction or vegetative growth
CCD1	Os06g0683400	LOC_Os06g46950	salt tolerance	OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.	OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.
CCD1	Os06g0683400	LOC_Os06g46950	tolerance	OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.	OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.
CCD1	Os06g0683400	LOC_Os06g46950	osmotic tolerance	OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.	OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.
CCD1	Os06g0683400	LOC_Os06g46950	salt stress	OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.	OsCCD1 transcript levels were transiently induced by osmotic stress and salt stress through the calcium-mediated ABA signal.
CCP1|DFO1|EMF1|OsEMF1	Os01g0229300	LOC_Os01g12890	map-based cloning	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Map-based cloning revealed that CCP1 encodes a putative plant-specific EMBRYONIC FLOWER1 (EMF1)-like protein
CCP1|DFO1|EMF1|OsEMF1	Os01g0229300	LOC_Os01g12890	floral	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Taken together, our results show that CCP1 plays an important role in palea development through maintaining H3K27me3-mediated epigenetic silence of the carpel identity-specifying gene OsMADS58, shedding light on the epigenetic mechanism in floral organ development
CCP1|DFO1|EMF1|OsEMF1	Os01g0229300	LOC_Os01g12890	palea	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Mutation in CCP1 resulted in abnormal palea with ectopic stigmatic tissues and other pleiotropic phenotypes
CCP1|DFO1|EMF1|OsEMF1	Os01g0229300	LOC_Os01g12890	palea	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	We found that OsMADS58, a C-class gene responsible for carpel morphogenesis, was ectopically expressed in the ccp1palea, indicating that the ccp1 palea was misspecified and partially acquired carpel-like identity
CCP1|DFO1|EMF1|OsEMF1	Os01g0229300	LOC_Os01g12890	palea	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Constitutive expression of OsMADS58 in the wild-type rice plants caused morphological abnormality of palea similar to that of ccp1, whereas OsMADS58 knockdown by RNAi in ccp1 could rescue the abnormal phenotype of mutant palea, suggesting that the repression of OsMADS58 expression by CCP1 is critical for palea development
CCP1|DFO1|EMF1|OsEMF1	Os01g0229300	LOC_Os01g12890	palea	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Taken together, our results show that CCP1 plays an important role in palea development through maintaining H3K27me3-mediated epigenetic silence of the carpel identity-specifying gene OsMADS58, shedding light on the epigenetic mechanism in floral organ development
CCP1|DFO1|EMF1|OsEMF1	Os01g0229300	LOC_Os01g12890	development	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Constitutive expression of OsMADS58 in the wild-type rice plants caused morphological abnormality of palea similar to that of ccp1, whereas OsMADS58 knockdown by RNAi in ccp1 could rescue the abnormal phenotype of mutant palea, suggesting that the repression of OsMADS58 expression by CCP1 is critical for palea development
CCP1|DFO1|EMF1|OsEMF1	Os01g0229300	LOC_Os01g12890	development	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Taken together, our results show that CCP1 plays an important role in palea development through maintaining H3K27me3-mediated epigenetic silence of the carpel identity-specifying gene OsMADS58, shedding light on the epigenetic mechanism in floral organ development
CCP1|DFO1|EMF1|OsEMF1	Os01g0229300	LOC_Os01g12890	floral organ	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Taken together, our results show that CCP1 plays an important role in palea development through maintaining H3K27me3-mediated epigenetic silence of the carpel identity-specifying gene OsMADS58, shedding light on the epigenetic mechanism in floral organ development
cdc2Os-1|CDKA1	Os03g0118400	LOC_Os03g02680	temperature	Isolation and characterization of cDNA clones encoding cdc2 homologues from Oryza sativa: a functional homologue and cognate variants	cdc2Os-1 could complement a temperature-sensitive yeast mutant of cdc28
CDE4	Os08g0191900	LOC_Os08g09270	chloroplast	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice
CDE4	Os08g0191900	LOC_Os08g09270	chloroplast	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	CDE4 directly binds to the transcripts of the chloroplast genes rpl2, ndhA, and ndhB
CDE4	Os08g0191900	LOC_Os08g09270	chloroplast	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	Our results suggest that CDE4 participates in plastid RNA splicing and plays an important role in rice chloroplast development under low-temperature conditions
CDE4	Os08g0191900	LOC_Os08g09270	development	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice
CDE4	Os08g0191900	LOC_Os08g09270	development	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	Our results suggest that CDE4 participates in plastid RNA splicing and plays an important role in rice chloroplast development under low-temperature conditions
CDE4	Os08g0191900	LOC_Os08g09270	R protein	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	Positional cloning revealed that CDE4 encodes a P-type PPR protein localized in chloroplasts
CDE4	Os08g0191900	LOC_Os08g09270	Kinase	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	Moreover, CDE4 interacts with the guanylate kinase VIRESCENT 2 (V2); overexpression of V2 enhanced CDE4 protein stability, thereby rescuing the cde4 phenotype at 20C
CDE4	Os08g0191900	LOC_Os08g09270	chloroplast development	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice
CDE4	Os08g0191900	LOC_Os08g09270	chloroplast development	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	Our results suggest that CDE4 participates in plastid RNA splicing and plays an important role in rice chloroplast development under low-temperature conditions
CDE4	Os08g0191900	LOC_Os08g09270	kinase	CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice	Moreover, CDE4 interacts with the guanylate kinase VIRESCENT 2 (V2); overexpression of V2 enhanced CDE4 protein stability, thereby rescuing the cde4 phenotype at 20C
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	root apical meristem	Isolation and characterization of a rice cDNA encoding B1-type cyclin-dependent kinase	In plants, the CDKB1;1 transcripts were highly expressed in the shoot and root apical meristems, but not in mature plant organs
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	root	Isolation and characterization of a rice cDNA encoding B1-type cyclin-dependent kinase	In plants, the CDKB1;1 transcripts were highly expressed in the shoot and root apical meristems, but not in mature plant organs
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	shoot	Isolation and characterization of a rice cDNA encoding B1-type cyclin-dependent kinase	In plants, the CDKB1;1 transcripts were highly expressed in the shoot and root apical meristems, but not in mature plant organs
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	meristem	Isolation and characterization of a rice cDNA encoding B1-type cyclin-dependent kinase	In plants, the CDKB1;1 transcripts were highly expressed in the shoot and root apical meristems, but not in mature plant organs
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	stomatal	A2-type Cyclin is required for the Asymmetric Entry Division in Rice Stomatal Development.	 In Arabidopsis, four A2-type cyclins (CYCA2s) function redundantly in regulating CDKB1 activity to promote the asymmetric division for stomatal initiation and the symmetric division of guard mother cells (GMCs)
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	stomatal	A2-type Cyclin is required for the Asymmetric Entry Division in Rice Stomatal Development.	 Cross-species complementation tests demonstrated that OsCYCA2;1 and OsCDKB1;1 could complement the defective stomatal phenotypes of Arabidopsis cyca2 and cdkb1 mutants, but also could suppress DNA endoduplication and cell enlargement
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	Kinase	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Additionally, Yeast one-hybrid assay and electrophoretic mobility shift assay (EMSA) showed that OsFLP directly bound to the promoter region of Oryza sativa B-type Cyclin-Dependent Kinase 1;1 (OsCDKB1;1), and the expression of OsCDKB1;1 was repressed in osflp
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	kinase	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Additionally, Yeast one-hybrid assay and electrophoretic mobility shift assay (EMSA) showed that OsFLP directly bound to the promoter region of Oryza sativa B-type Cyclin-Dependent Kinase 1;1 (OsCDKB1;1), and the expression of OsCDKB1;1 was repressed in osflp
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	salt	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Disturbing the expression of OsCDKB1;1 remarkably enhanced the tolerance to salt stress
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	salt	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Taken together, our findings reveal a crucial function of OsFLP regulating OsCDKB1;1 in salt tolerance and largely extend the knowledge about the role of OsFLP in rice
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	tolerance	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Disturbing the expression of OsCDKB1;1 remarkably enhanced the tolerance to salt stress
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	tolerance	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Taken together, our findings reveal a crucial function of OsFLP regulating OsCDKB1;1 in salt tolerance and largely extend the knowledge about the role of OsFLP in rice
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	salt tolerance	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Taken together, our findings reveal a crucial function of OsFLP regulating OsCDKB1;1 in salt tolerance and largely extend the knowledge about the role of OsFLP in rice
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	salt stress	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Disturbing the expression of OsCDKB1;1 remarkably enhanced the tolerance to salt stress
CDKB1;1|CDKB1|OsCDKB1;1	Os01g0897000	LOC_Os01g67160	stress	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Disturbing the expression of OsCDKB1;1 remarkably enhanced the tolerance to salt stress
CDKB2;1|cdc2Os3|CDKB2	Os08g0512600	LOC_Os08g40170	root	Differential expression of genes for cyclin-dependent protein kinases in rice plants	We have analyzed the expression of four rice (Oryza sativa) CDK genes, cdc2Os1, cdc2Os2, cdc2Os3, and R2, by in situ hybridization of sections of root apices
CDKB2;1|cdc2Os3|CDKB2	Os08g0512600	LOC_Os08g40170	mitosis	CDKB2 is involved in mitosis and DNA damage response in rice	In addition, polyploid cells due to endomitosis were present in CDKB2;1 knockdown rice, suggesting an important role for Orysa;CDKB2;1 during mitosis
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	defense	A cyclic nucleotide-gated channel mediates cytoplasmic calcium elevation and disease resistance in rice.	We show that OsCNGC9 mediates PAMP-induced Ca2+ influx and that this event is critical for PAMPs-triggered ROS burst and induction of PTI-related defense gene expression
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	Kinase	A cyclic nucleotide-gated channel mediates cytoplasmic calcium elevation and disease resistance in rice.	We further show that a PTI-related receptor-like cytoplasmic kinase OsRLCK185 physically interacts with and phosphorylates OsCNGC9 to activate its channel activity
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	transcription factor	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	In addition, transcription of OsCNGC9 is activated by a rice dehydration responsive element binding transcription factor, OsDREB1A
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	tolerance	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	tolerance	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	We showed that the loss-of-function mutant of OsCNGC9 is defective in cold-induced calcium influx and more sensitive to prolonged cold treatment while OsCNGC9 overexpression confers enhanced cold tolerance
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	tolerance	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	Together, our results suggested that OsCNGC9 enhances chilling tolerance in rice through regulating cold-induced calcium influx and cytoplasmic calcium elevation
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	cold tolerance	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	We showed that the loss-of-function mutant of OsCNGC9 is defective in cold-induced calcium influx and more sensitive to prolonged cold treatment while OsCNGC9 overexpression confers enhanced cold tolerance
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	chilling	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	chilling	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	Mechanistically, we showed that in response to chilling stress, OsSAPK8, a homolog of Arabidopsis thaliana OST1, phosphorylates and activates OsCNGC9 to trigger Ca2+ influx
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	chilling	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	Together, our results suggested that OsCNGC9 enhances chilling tolerance in rice through regulating cold-induced calcium influx and cytoplasmic calcium elevation
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	calcium	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	We showed that the loss-of-function mutant of OsCNGC9 is defective in cold-induced calcium influx and more sensitive to prolonged cold treatment while OsCNGC9 overexpression confers enhanced cold tolerance
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	calcium	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	Together, our results suggested that OsCNGC9 enhances chilling tolerance in rice through regulating cold-induced calcium influx and cytoplasmic calcium elevation
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	cold	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	We showed that the loss-of-function mutant of OsCNGC9 is defective in cold-induced calcium influx and more sensitive to prolonged cold treatment while OsCNGC9 overexpression confers enhanced cold tolerance
CDS1|OsCNGC9	Os09g0558300	LOC_Os09g38580	chilling stress	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	Mechanistically, we showed that in response to chilling stress, OsSAPK8, a homolog of Arabidopsis thaliana OST1, phosphorylates and activates OsCNGC9 to trigger Ca2+ influx
CDSP32	Os07g0476900	LOC_Os07g29410	oxidative	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	One of the mechanisms plants have developed for chloroplast protection against oxidative damage involves a 2-Cys peroxiredoxin, which has been proposed to be reduced by ferredoxin and plastid thioredoxins, Trx x and CDSP32, the FTR/Trx pathway
CDSP32	Os07g0476900	LOC_Os07g29410	chloroplast	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	One of the mechanisms plants have developed for chloroplast protection against oxidative damage involves a 2-Cys peroxiredoxin, which has been proposed to be reduced by ferredoxin and plastid thioredoxins, Trx x and CDSP32, the FTR/Trx pathway
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	magnaporthe oryzae	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	Here, we report that the perception of CE by CEBiP contributes to disease resistance against the rice blast fungus, Magnaporthe oryzae, and that enhanced responses to CE by engineering CEBiP increase disease tolerance
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	defense response	Functional characterization of CEBiP and CERK1 homologs in arabidopsis and rice reveals the presence of different chitin receptor systems in plants	However, the single/triple knockout (KO) mutants of Arabidopsis CEBiP homologs and the overexpressor of AtCEBiP showed chitin-induced defense responses similar to wild-type Arabidopsis, indicating that AtCEBiP is biochemically functional as a chitin-binding protein but does not contribute to signaling
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	blight	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	To enhance defense responses to CE, we constructed chimeric genes composed of CEBiP and Xa21, which mediate resistance to rice bacterial leaf blight
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	nitrogen	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	The expression of either CRXa1 or CRXa3, each of which contains the whole extracellular portion of CEBiP, the whole intracellular domain of XA21, and the transmembrane domain from either CEBiP or XA21, induced cell death accompanied by an increased production of reactive oxygen and nitrogen species after treatment with CE
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	oxidative	Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor	Knockdown of CEBiP gene by RNA interference resulted in the suppression of the elicitor-induced oxidative burst as well as the gene responses, showing that CEBiP plays a key role in the perception and transduction of chitin oligosaccharide elicitor in the rice cells
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	disease resistance	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	Here, we report that the perception of CE by CEBiP contributes to disease resistance against the rice blast fungus, Magnaporthe oryzae, and that enhanced responses to CE by engineering CEBiP increase disease tolerance
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	leaf	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	To enhance defense responses to CE, we constructed chimeric genes composed of CEBiP and Xa21, which mediate resistance to rice bacterial leaf blight
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	disease	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	Here, we report that the perception of CE by CEBiP contributes to disease resistance against the rice blast fungus, Magnaporthe oryzae, and that enhanced responses to CE by engineering CEBiP increase disease tolerance
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	blast	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	Here, we report that the perception of CE by CEBiP contributes to disease resistance against the rice blast fungus, Magnaporthe oryzae, and that enhanced responses to CE by engineering CEBiP increase disease tolerance
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	defense	Functional characterization of CEBiP and CERK1 homologs in arabidopsis and rice reveals the presence of different chitin receptor systems in plants	However, the single/triple knockout (KO) mutants of Arabidopsis CEBiP homologs and the overexpressor of AtCEBiP showed chitin-induced defense responses similar to wild-type Arabidopsis, indicating that AtCEBiP is biochemically functional as a chitin-binding protein but does not contribute to signaling
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	cell wall	Effector-mediated suppression of chitin-triggered immunity by magnaporthe oryzae is necessary for rice blast disease	In rice (Oryza sativa), the chitin elicitor binding protein (CEBiP) recognizes chitin oligosaccharides released from the cell walls of fungal pathogens
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	defense	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	To enhance defense responses to CE, we constructed chimeric genes composed of CEBiP and Xa21, which mediate resistance to rice bacterial leaf blight
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	defense response	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	To enhance defense responses to CE, we constructed chimeric genes composed of CEBiP and Xa21, which mediate resistance to rice bacterial leaf blight
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	cell death	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice	The expression of either CRXa1 or CRXa3, each of which contains the whole extracellular portion of CEBiP, the whole intracellular domain of XA21, and the transmembrane domain from either CEBiP or XA21, induced cell death accompanied by an increased production of reactive oxygen and nitrogen species after treatment with CE
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	cell wall	Molecular Mechanism for Fungal Cell Wall Recognition by Rice Chitin Receptor OsCEBiP.	Chitin is the major component of fungal cell wall and serves as a molecular pattern that can be recognized by the receptor OsCEBiP in rice, a lysine motif (LysM) receptor-like protein (RLP), to trigger immune responses
CEBiP|OsCEBiP	Os03g0133400	LOC_Os03g04110	immune response	Molecular Mechanism for Fungal Cell Wall Recognition by Rice Chitin Receptor OsCEBiP.	Chitin is the major component of fungal cell wall and serves as a molecular pattern that can be recognized by the receptor OsCEBiP in rice, a lysine motif (LysM) receptor-like protein (RLP), to trigger immune responses
CFL1	Os02g0516400	LOC_Os02g31140	cuticle	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis	We overexpressed both rice and Arabidopsis CFL1 in Arabidopsis thaliana; these transgenic plants showed severely impaired cuticle development, similar to that in cfl1 rice
CFL1	Os02g0516400	LOC_Os02g31140	cuticle	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis	Reduced expression of At CFL1 resulted in reinforcement of cuticle structure
CFL1	Os02g0516400	LOC_Os02g31140	cuticle	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis	Suppression of HDG1 function resulted in similar defective cuticle phenotypes in wild-type Arabidopsis but much alleviated phenotypes in At cfl1-1 mutants
CFL1	Os02g0516400	LOC_Os02g31140	cuticle	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis	The expression of two cuticle development-associated genes, BDG and FDH, was downregulated in At CFL1 overexpressor and HDG1 suppression plants
CFL1	Os02g0516400	LOC_Os02g31140	cuticle	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis	Our results suggest that rice and Arabidopsis CFL1 negatively regulate cuticle development by affecting the function of HDG1, which regulates the downstream genes BDG and FDH
CFL1	Os02g0516400	LOC_Os02g31140	cuticle	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis
CFL1	Os02g0516400	LOC_Os02g31140	transcription factor	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis	Biochemical evidence showed that At CFL1 interacts with HDG1, a class IV homeodomain-leucine zipper transcription factor
CFL1	Os02g0516400	LOC_Os02g31140	transcription factor	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis
CFL1	Os02g0516400	LOC_Os02g31140	leaf	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis	We identified a rice (Oryza sativa) dominant curly leaf mutant, curly flag leaf1 (cfl1), and cloned CFL1, which encodes a WW domain protein
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	In this study, we characterized a MIKC-type MADS box gene, CHIMERIC FLORAL ORGANS (CFO1), which plays a key role in the regulation of floral organ identity in rice (Oryza sativa)
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The cfo1 mutant displayed defective marginal regions of the palea, chimeric floral organs, and ectopic floral organs
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The expression domains of CFO1 were mainly restricted to the marginal region of the palea and inner floral organs
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The floral organ identity gene DROOPING LEAF (DL) was expressed ectopically in all defective organs of cfo1 flowers
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	Double mutant analysis revealed that loss of DL function mitigated some of the defects of floral organs in cfo1 flowers
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	We propose that the CFO1 gene plays a pivotal role in maintaining floral organ identity through negative regulation of DL expression
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	palea	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The cfo1 mutant displayed defective marginal regions of the palea, chimeric floral organs, and ectopic floral organs
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	palea	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The expression domains of CFO1 were mainly restricted to the marginal region of the palea and inner floral organs
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	leaf	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The floral organ identity gene DROOPING LEAF (DL) was expressed ectopically in all defective organs of cfo1 flowers
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	flower	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The floral organ identity gene DROOPING LEAF (DL) was expressed ectopically in all defective organs of cfo1 flowers
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	flower	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	Double mutant analysis revealed that loss of DL function mitigated some of the defects of floral organs in cfo1 flowers
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	flower	OsMADS32 interacts with PI-like proteins and regulates rice flower development.	OsMADS32 interacts with PI-like proteins and regulates rice flower development.
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	yield	OsMADS32 interacts with PI-like proteins and regulates rice flower development.	OsMADS32 is a monocot specific MIKC(c) type MADS-box gene that plays an important role in regulating rice floral meristem and organs identity, a crucial process for reproductive success and rice yield
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	OsMADS32 interacts with PI-like proteins and regulates rice flower development.	OsMADS32 is a monocot specific MIKC(c) type MADS-box gene that plays an important role in regulating rice floral meristem and organs identity, a crucial process for reproductive success and rice yield
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	meristem	OsMADS32 interacts with PI-like proteins and regulates rice flower development.	OsMADS32 is a monocot specific MIKC(c) type MADS-box gene that plays an important role in regulating rice floral meristem and organs identity, a crucial process for reproductive success and rice yield
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	reproductive	OsMADS32 interacts with PI-like proteins and regulates rice flower development.	OsMADS32 is a monocot specific MIKC(c) type MADS-box gene that plays an important role in regulating rice floral meristem and organs identity, a crucial process for reproductive success and rice yield
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	stamen	OsMADS32 interacts with PI-like proteins and regulates rice flower development.	This work provides new insight into the mechanism by which OsMADS32 regulates rice lodicule and stamen identity, by interaction with two PI-like proteins via its K domain
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	flower development	OsMADS32 interacts with PI-like proteins and regulates rice flower development	OsMADS32 interacts with PI-like proteins and regulates rice flower development
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	transcription factor	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	We show here that the rice homeotic transcription factor OsMADS32 regulates floral patterning by interacting synergistically with E class protein OsMADS6 in a dosage-dependent manner
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	development	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	development	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Our findings suggest that OsMADS32 is an important factor for floral meristem identity maintenance and that it integrates the action of other MADS-box homeotic proteins to sustain floral organ specification and development in rice
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	development	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Given that OsMADS32 is an orphan gene and absent in eudicots, our data substantially expand our understanding of flower development in plants
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	flower	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Given that OsMADS32 is an orphan gene and absent in eudicots, our data substantially expand our understanding of flower development in plants
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	We show here that the rice homeotic transcription factor OsMADS32 regulates floral patterning by interacting synergistically with E class protein OsMADS6 in a dosage-dependent manner
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Our findings suggest that OsMADS32 is an important factor for floral meristem identity maintenance and that it integrates the action of other MADS-box homeotic proteins to sustain floral organ specification and development in rice
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	meristem	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	meristem	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Our findings suggest that OsMADS32 is an important factor for floral meristem identity maintenance and that it integrates the action of other MADS-box homeotic proteins to sustain floral organ specification and development in rice
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral meristem	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral meristem	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Our findings suggest that OsMADS32 is an important factor for floral meristem identity maintenance and that it integrates the action of other MADS-box homeotic proteins to sustain floral organ specification and development in rice
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral organ	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Our findings suggest that OsMADS32 is an important factor for floral meristem identity maintenance and that it integrates the action of other MADS-box homeotic proteins to sustain floral organ specification and development in rice
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	flower development	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Given that OsMADS32 is an orphan gene and absent in eudicots, our data substantially expand our understanding of flower development in plants
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	ovule	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	development	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	floral meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	palea	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
CFO1|OsMADS32	Os01g0726400	LOC_Os01g52680	ovule	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
Cga1	Os02g0220400	LOC_Os02g12790	tiller	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Strong overexpression of Cga1 produces dark green, semidwarf plants with reduced tillering, whereas RNA interference knockdown results in reduced chlorophyll and increased tillering
Cga1	Os02g0220400	LOC_Os02g12790	transcription factor	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	In rice (Oryza sativa), the CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR1 (Cga1) shows increased expression following light, nitrogen, and cytokinin treatments, while darkness and gibberellin reduce expression
Cga1	Os02g0220400	LOC_Os02g12790	chloroplast	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Coexpression, microarray, and real-time expression analyses demonstrate a correlation between Cga1 expression and the expression of important nucleus-encoded, chloroplast-localized genes
Cga1	Os02g0220400	LOC_Os02g12790	chloroplast	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Constitutive Cga1 overexpression increases both chloroplast biogenesis and starch production but also results in delayed senescence and reduced grain filling
Cga1	Os02g0220400	LOC_Os02g12790	chloroplast	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Growing the transgenic lines under different nitrogen regimes indicates potential agricultural applications for Cga1, including manipulation of biomass, chlorophyll/chloroplast content, and harvest index
Cga1	Os02g0220400	LOC_Os02g12790	chloroplast	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	These results indicate a conserved mechanism by which Cga1 regulates chloroplast development in higher plants
Cga1	Os02g0220400	LOC_Os02g12790	senescence	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Constitutive Cga1 overexpression increases both chloroplast biogenesis and starch production but also results in delayed senescence and reduced grain filling
Cga1	Os02g0220400	LOC_Os02g12790	dwarf	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Strong overexpression of Cga1 produces dark green, semidwarf plants with reduced tillering, whereas RNA interference knockdown results in reduced chlorophyll and increased tillering
Cga1	Os02g0220400	LOC_Os02g12790	biomass	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Growing the transgenic lines under different nitrogen regimes indicates potential agricultural applications for Cga1, including manipulation of biomass, chlorophyll/chloroplast content, and harvest index
Cga1	Os02g0220400	LOC_Os02g12790	starch	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Constitutive Cga1 overexpression increases both chloroplast biogenesis and starch production but also results in delayed senescence and reduced grain filling
Cga1	Os02g0220400	LOC_Os02g12790	tillering	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Strong overexpression of Cga1 produces dark green, semidwarf plants with reduced tillering, whereas RNA interference knockdown results in reduced chlorophyll and increased tillering
Cga1	Os02g0220400	LOC_Os02g12790	cytokinin	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	In rice (Oryza sativa), the CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR1 (Cga1) shows increased expression following light, nitrogen, and cytokinin treatments, while darkness and gibberellin reduce expression
Cga1	Os02g0220400	LOC_Os02g12790	grain filling	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Constitutive Cga1 overexpression increases both chloroplast biogenesis and starch production but also results in delayed senescence and reduced grain filling
Cga1	Os02g0220400	LOC_Os02g12790	grain	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Constitutive Cga1 overexpression increases both chloroplast biogenesis and starch production but also results in delayed senescence and reduced grain filling
Cga1	Os02g0220400	LOC_Os02g12790	gibberellin	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	In rice (Oryza sativa), the CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR1 (Cga1) shows increased expression following light, nitrogen, and cytokinin treatments, while darkness and gibberellin reduce expression
Cga1	Os02g0220400	LOC_Os02g12790	nitrogen	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	In rice (Oryza sativa), the CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR1 (Cga1) shows increased expression following light, nitrogen, and cytokinin treatments, while darkness and gibberellin reduce expression
Cga1	Os02g0220400	LOC_Os02g12790	nitrogen	Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture	Growing the transgenic lines under different nitrogen regimes indicates potential agricultural applications for Cga1, including manipulation of biomass, chlorophyll/chloroplast content, and harvest index
Chalk5	Os05g0156900	LOC_Os05g06480	chalkiness	Chalk5 encodes a vacuolar H+-translocating pyrophosphatase influencing grain chalkiness in rice	Elevated expression of Chalk5 increases the chalkiness of the endosperm, putatively by disturbing the pH homeostasis of the endomembrane trafficking system in developing seeds, which affects the biogenesis of protein bodies and is coupled with a great increase in small vesicle-like structures, thus forming air spaces among endosperm storage substances and resulting in chalky grain.
chi11|OsCHI11	Os03g0132900	LOC_Os03g04060	tolerance	Dual gene expression cassette is superior than single gene cassette for enhancing sheath blight tolerance in transgenic rice	The expression of both the genes individually (OsCHI11 and AtNPR1) in rice has been demonstrated to confer enhanced tolerance to sheath blight disease
Chl1|OsChlD	Os03g0811100	LOC_Os03g59640	seedling	Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development	In the seedlings fed with aminolevulinate-dipyridyl in darkness, MgProto levels in the chl1 and chl9 mutants decreased up to 25% and 31% of that in wild-type, respectively, indicating that the Mg-chelatase activity is significantly reduced, causing the eventual decrease in chlorophyll synthesis
Chl9|OsChlI	Os03g0563300	LOC_Os03g36540	seedling	Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development	In the seedlings fed with aminolevulinate-dipyridyl in darkness, MgProto levels in the chl1 and chl9 mutants decreased up to 25% and 31% of that in wild-type, respectively, indicating that the Mg-chelatase activity is significantly reduced, causing the eventual decrease in chlorophyll synthesis
CHR721	Os07g0636200	LOC_Os07g44210	development	CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice.	CHR721 functions as a chromatin remodeler and interacts with a known single-stranded binding protein, OsRPA1a, to regulate both male and female reproductive development in rice
CHR721	Os07g0636200	LOC_Os07g44210	reproductive	CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice.	CHR721 functions as a chromatin remodeler and interacts with a known single-stranded binding protein, OsRPA1a, to regulate both male and female reproductive development in rice
CHR721	Os07g0636200	LOC_Os07g44210	reproductive development	CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice.	CHR721 functions as a chromatin remodeler and interacts with a known single-stranded binding protein, OsRPA1a, to regulate both male and female reproductive development in rice
CHR721	Os07g0636200	LOC_Os07g44210	male reproductive development	CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice.	CHR721 functions as a chromatin remodeler and interacts with a known single-stranded binding protein, OsRPA1a, to regulate both male and female reproductive development in rice
CHR721	Os07g0636200	LOC_Os07g44210	DNA repair	CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice.	CHR721 was found to interact with replication protein A (OsRPA1a), which is involved in DNA repair
CHR721	Os07g0636200	LOC_Os07g44210	DNA repair	CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice.	The expressions of genes involved in DNA repair and cell-cycle checkpoints were consistently upregulated in chr721
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	seedling	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	seedling	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.	These results suggest that the rice CHD3 protein CHR729 plays an important role in many aspects of seedling development and controls this development via the gibberellin pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	development	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	development	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.	These results suggest that the rice CHD3 protein CHR729 plays an important role in many aspects of seedling development and controls this development via the gibberellin pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	gibberellin	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.	These results suggest that the rice CHD3 protein CHR729 plays an important role in many aspects of seedling development and controls this development via the gibberellin pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	R protein	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.	CHR729 encoded a nuclear protein and was expressed in almost all organs
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	Gibberellin	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.	These results suggest that the rice CHD3 protein CHR729 plays an important role in many aspects of seedling development and controls this development via the gibberellin pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	stem	CRL6, a member of the CHD protein family, is required for crown root development in rice	Realtime RT-PCR analysis showed that CRL6 was most highly expressed in the stem base region where crown roots initiated
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	root	CRL6, a member of the CHD protein family, is required for crown root development in rice	Histological analysis showed that CRL6 influences crown root formation by regulating primordial initiation and development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	root	CRL6, a member of the CHD protein family, is required for crown root development in rice	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	development	CRL6, a member of the CHD protein family, is required for crown root development in rice	Histological analysis showed that CRL6 influences crown root formation by regulating primordial initiation and development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	development	CRL6, a member of the CHD protein family, is required for crown root development in rice	In addition, auxin-action inhibited phenotype was observed during crl6 development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	development	CRL6, a member of the CHD protein family, is required for crown root development in rice	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	map-based cloning	CRL6, a member of the CHD protein family, is required for crown root development in rice	Map-based cloning and subsequent complementation tests verified that the CRL6 gene encodes a member of the large chromodomain, helicase/ATPase, and DNA-binding domain (CHD) family protein
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown root development	CRL6, a member of the CHD protein family, is required for crown root development in rice	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	root development	CRL6, a member of the CHD protein family, is required for crown root development in rice	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown	CRL6, a member of the CHD protein family, is required for crown root development in rice	Histological analysis showed that CRL6 influences crown root formation by regulating primordial initiation and development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown	CRL6, a member of the CHD protein family, is required for crown root development in rice	Realtime RT-PCR analysis showed that CRL6 was most highly expressed in the stem base region where crown roots initiated
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown	CRL6, a member of the CHD protein family, is required for crown root development in rice	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown root	CRL6, a member of the CHD protein family, is required for crown root development in rice	Histological analysis showed that CRL6 influences crown root formation by regulating primordial initiation and development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown root	CRL6, a member of the CHD protein family, is required for crown root development in rice	Realtime RT-PCR analysis showed that CRL6 was most highly expressed in the stem base region where crown roots initiated
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown root	CRL6, a member of the CHD protein family, is required for crown root development in rice	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	stem	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Realtime RT-PCR analysis showed that CRL6 was most highly expressed in the stem base region where crown roots initiated
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	root	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Histological analysis showed that CRL6 influences crown root formation by regulating primordial initiation and development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	root	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	development	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Histological analysis showed that CRL6 influences crown root formation by regulating primordial initiation and development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	development	CRL6, a member of the CHD protein family, is required for crown root development in rice.	In addition, auxin-action inhibited phenotype was observed during crl6 development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	development	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	map-based cloning	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Map-based cloning and subsequent complementation tests verified that the CRL6 gene encodes a member of the large chromodomain, helicase/ATPase, and DNA-binding domain (CHD) family protein
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown root development	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	root development	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Histological analysis showed that CRL6 influences crown root formation by regulating primordial initiation and development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Realtime RT-PCR analysis showed that CRL6 was most highly expressed in the stem base region where crown roots initiated
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown root	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Histological analysis showed that CRL6 influences crown root formation by regulating primordial initiation and development
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown root	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Realtime RT-PCR analysis showed that CRL6 was most highly expressed in the stem base region where crown roots initiated
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	crown root	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Our results provide evidence that CRL6 plays an important role in crown root development in rice via auxin-related signaling pathway
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	development	The Rice Rolled Fine Striped (RFS) CHD3/Mi-2 Chromatin Remodeling Factor Epigenetically Regulates Genes Involved in Oxidative Stress Responses During Leaf Development.	Our results suggest that RFS is required for many aspects of plant development and its function is closely associated with epigenetic regulation of genes that modulate ROS homeostasis
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	homeostasis	The Rice Rolled Fine Striped (RFS) CHD3/Mi-2 Chromatin Remodeling Factor Epigenetically Regulates Genes Involved in Oxidative Stress Responses During Leaf Development.	Our results suggest that RFS is required for many aspects of plant development and its function is closely associated with epigenetic regulation of genes that modulate ROS homeostasis
CHR729|OsCHD3|CRL6|RFS	Os07g0497100|Os07g0497000	LOC_Os07g31450	plant development	The Rice Rolled Fine Striped (RFS) CHD3/Mi-2 Chromatin Remodeling Factor Epigenetically Regulates Genes Involved in Oxidative Stress Responses During Leaf Development.	Our results suggest that RFS is required for many aspects of plant development and its function is closely associated with epigenetic regulation of genes that modulate ROS homeostasis
CHS|OsCHS1	Os11g0530600	LOC_Os11g32650	sterile	Flavonoids are indispensable for complete male fertility in rice.	 In rice, the chalcone synthase mutant oschs1 produces flavonoid-depleted pollens and is male sterile
CHS|OsCHS1	Os11g0530600	LOC_Os11g32650	fertility	Homeostasis of flavonoids and triterpenoids most likely modulates starch metabolism for pollen tube penetration in rice.	 Our findings reveal a new mechanism that OsCHS1 modulates starch hydrolysis and glycometabolism through modulating the metabolic homeostasis of flavonoids and triterpenoids which affects α-amylase activity to maintain PT penetration in rice, which contributes to a better understanding of the function of CHS1 in crop fertility and breeding
CHS|OsCHS1	Os11g0530600	LOC_Os11g32650	starch	Homeostasis of flavonoids and triterpenoids most likely modulates starch metabolism for pollen tube penetration in rice.	 Our findings reveal a new mechanism that OsCHS1 modulates starch hydrolysis and glycometabolism through modulating the metabolic homeostasis of flavonoids and triterpenoids which affects α-amylase activity to maintain PT penetration in rice, which contributes to a better understanding of the function of CHS1 in crop fertility and breeding
CHS|OsCHS1	Os11g0530600	LOC_Os11g32650	homeostasis	Homeostasis of flavonoids and triterpenoids most likely modulates starch metabolism for pollen tube penetration in rice.	 Further analysis showed that loss of OsCHS1 function disrupted the homeostasis of flavonoid and triterpenoid metabolism and led to the accumulation of triterpenoid, which inhibits significantly α-amylase activity, amyloplast hydrolysis and monosaccharide content in xt6, these ultimately impaired tricarboxylic acid (TCA) cycle, reduced ATP content and lowered the turgor pressure as well
CHS|OsCHS1	Os11g0530600	LOC_Os11g32650	homeostasis	Homeostasis of flavonoids and triterpenoids most likely modulates starch metabolism for pollen tube penetration in rice.	 Our findings reveal a new mechanism that OsCHS1 modulates starch hydrolysis and glycometabolism through modulating the metabolic homeostasis of flavonoids and triterpenoids which affects α-amylase activity to maintain PT penetration in rice, which contributes to a better understanding of the function of CHS1 in crop fertility and breeding
CHS|OsCHS1	Os11g0530600	LOC_Os11g32650	breeding	Homeostasis of flavonoids and triterpenoids most likely modulates starch metabolism for pollen tube penetration in rice.	 Our findings reveal a new mechanism that OsCHS1 modulates starch hydrolysis and glycometabolism through modulating the metabolic homeostasis of flavonoids and triterpenoids which affects α-amylase activity to maintain PT penetration in rice, which contributes to a better understanding of the function of CHS1 in crop fertility and breeding
CHS|OsCHS1	Os11g0530600	LOC_Os11g32650	flavonoid	Homeostasis of flavonoids and triterpenoids most likely modulates starch metabolism for pollen tube penetration in rice.	 Further analysis showed that loss of OsCHS1 function disrupted the homeostasis of flavonoid and triterpenoid metabolism and led to the accumulation of triterpenoid, which inhibits significantly α-amylase activity, amyloplast hydrolysis and monosaccharide content in xt6, these ultimately impaired tricarboxylic acid (TCA) cycle, reduced ATP content and lowered the turgor pressure as well
CIGR1	Os07g0545800	LOC_Os07g36170	defense reactions	Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor	Localization experiments using GFP-fusions of both CIGR1 and CIGR2 in a transient onion assay confirmed the nuclear localization of both rice proteins (Fig. 2), supporting the possible role of each as transcriptional regulators in the defense reactions.
CIGR1	Os07g0545800	LOC_Os07g36170	elicitor-response	Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor	The fact that the induction of CIGR1 and CIGR2 is not inhibited by pretreatment with cycloheximide strongly indicates that these two gene products act in the early step of the elicitor-response.
CIGR2	Os07g0583600	LOC_Os07g39470	defense reactions	Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor	Localization experiments using GFP-fusions of both CIGR1 and CIGR2 in a transient onion assay confirmed the nuclear localization of both rice proteins (Fig. 2), supporting the possible role of each as transcriptional regulators in the defense reactions.
CIGR2	Os07g0583600	LOC_Os07g39470	elicitor-response	Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor	The fact that the induction of CIGR1 and CIGR2 is not inhibited by pretreatment with cycloheximide strongly indicates that these two gene products act in the early step of the elicitor-response.
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	gibberellin	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	heading date	Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions	In addition, QTLs near Hd2, Hd16, and Ghd7, which are involved in inhibition of heading under long-day conditions, function in the same pathway that controls heading date
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	Map-based cloning revealed that the rice flowering-time quantitative trait locus (QTL) Heading date 16 (Hd16) encodes a casein kinase-I protein
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	By using near-isogenic lines with functional or deficient alleles of several rice flowering-time genes, we observed significant digenetic interactions between Hd16 and four other flowering-time genes (Ghd7, Hd1, DTH8 and Hd2)
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	These results demonstrate that Hd16 acts as an inhibitor in the rice flowering pathway by enhancing the photoperiod response as a result of the phosphorylation of Ghd7
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	flower	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	In addition, HOX1a suppresses the transcription of early flowering1 (EL1), a negative regulator of GA signaling, and further electrophoretic mobility shift assay and chromatin immunoprecipitation analysis revealed that HOX1a directly bound to the promoter region of EL1 to suppress its expression and stimulate GA signaling
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	flower	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	heading date	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	Map-based cloning revealed that the rice flowering-time quantitative trait locus (QTL) Heading date 16 (Hd16) encodes a casein kinase-I protein
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	flower	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	To study the relevant regulatory mechanisms, we isolated a rice mutant earlier flowering1, el1, which is deficient in a casein kinase I that has critical roles in both plants and animals
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	transcription factor	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	dwarf	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	Overexpression of SLR1 in wild-type plants caused a severe dwarf phenotype, which was significantly suppressed by EL1 deficiency, indicating the negative effect of SLR1 on GA signalling requires the EL1 function
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	ga	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	In addition, HOX1a suppresses the transcription of early flowering1 (EL1), a negative regulator of GA signaling, and further electrophoretic mobility shift assay and chromatin immunoprecipitation analysis revealed that HOX1a directly bound to the promoter region of EL1 to suppress its expression and stimulate GA signaling
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	ga	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	These results demonstrate that HOX1a functions as a positive regulator of GA signaling by suppressing EL1, providing informative hints on the study of GA signaling
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	flowering time	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	gibberellin	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	ga	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	el1 had an enhanced GA response, consistent with the suppression of EL1 expression by exogenous GA(3)
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	ga	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	Overexpression of SLR1 in wild-type plants caused a severe dwarf phenotype, which was significantly suppressed by EL1 deficiency, indicating the negative effect of SLR1 on GA signalling requires the EL1 function
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	ga	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	This study shows EL1 a novel and key regulator of the GA response and provided important clues on casein kinase I activities in GA signalling and plant development
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	spikelet	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	To confirm the negative effect of the el1 mutation on spikelet fertility, we examined a line carrying a T-DNA insertion el1 mutant [hereafter ZH11(el1)] and its parental cultivar 'Zhonghua11 (ZH11)'
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	spikelet	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	The el1 mutation contributes to early flowering in japonica rice under long days but fails to limit GA signaling, thus negatively affecting spikelet fertility, which results in a loss of grain yield
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	spikelet	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	Thus, EL1 is essential for photoperiod sensitivity in flowering as well as spikelet fertility in grain production
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	grain	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	However, the elite japonica cultivar Koshihikari, which has a nonfunctional el1 allele for early flowering in long days, produces fertile spikelets and normal grain yields, like other elite japonica cultivars
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	grain	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	The el1 mutation contributes to early flowering in japonica rice under long days but fails to limit GA signaling, thus negatively affecting spikelet fertility, which results in a loss of grain yield
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	grain	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	Thus, EL1 is essential for photoperiod sensitivity in flowering as well as spikelet fertility in grain production
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	grain yield	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	However, the elite japonica cultivar Koshihikari, which has a nonfunctional el1 allele for early flowering in long days, produces fertile spikelets and normal grain yields, like other elite japonica cultivars
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	grain yield	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	The el1 mutation contributes to early flowering in japonica rice under long days but fails to limit GA signaling, thus negatively affecting spikelet fertility, which results in a loss of grain yield
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	yield	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	The el1 mutation contributes to early flowering in japonica rice under long days but fails to limit GA signaling, thus negatively affecting spikelet fertility, which results in a loss of grain yield
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	fertility	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	Thus, EL1 is essential for photoperiod sensitivity in flowering as well as spikelet fertility in grain production
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	ga	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	The el1 mutation contributes to early flowering in japonica rice under long days but fails to limit GA signaling, thus negatively affecting spikelet fertility, which results in a loss of grain yield
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	sterile	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	This indicates that as-yet-unknown regulator(s) that can overcome the male sterile phenotype of the el1 mutation must have been introduced into Koshihikari
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	GA	The Rice Floral Repressor Early flowering1 Affects Spikelet Fertility By Modulating Gibberellin Signaling.	The el1 mutation contributes to early flowering in japonica rice under long days but fails to limit GA signaling, thus negatively affecting spikelet fertility, which results in a loss of grain yield
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	Kinase	Fine-tuning of the setting of critical day length by two casein kinases in rice photoperiodic flowering.	Here, we identified two casein kinase genes, Hd16 and Hd6, which modulate the expression of florigen genes within certain restricted ranges of photoperiod, thereby fine-tuning the critical day length
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	development	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Tightly controlled expression of OsbHLH35 is critical for anther development in rice
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	development	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Our data suggest that OsbHLH35 plays an essential role in anther development in rice and the fine control of its expression is crucial to ensure proper seed production
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	spikelet	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Rice transgenic plants expressing GUS reporter gene under the control of OsbHLH35 promoter (pOsbHLH35::GUS) showed that this TF specifically accumulates in anthers at the meiosis stage and in other spikelet tissues
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	anther	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Tightly controlled expression of OsbHLH35 is critical for anther development in rice
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	anther	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Our data suggest that OsbHLH35 plays an essential role in anther development in rice and the fine control of its expression is crucial to ensure proper seed production
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	seed	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Plants overexpressing OsbHLH35 presented small and curved anthers, leading to a reduction of 72 % on seed production
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	seed	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Our data suggest that OsbHLH35 plays an essential role in anther development in rice and the fine control of its expression is crucial to ensure proper seed production
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	meiosis	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Rice transgenic plants expressing GUS reporter gene under the control of OsbHLH35 promoter (pOsbHLH35::GUS) showed that this TF specifically accumulates in anthers at the meiosis stage and in other spikelet tissues
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	anther development	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Tightly controlled expression of OsbHLH35 is critical for anther development in rice
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	anther development	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Our data suggest that OsbHLH35 plays an essential role in anther development in rice and the fine control of its expression is crucial to ensure proper seed production
CKI|EL1|Hd16	Os03g0793500	LOC_Os03g57940	transcriptional regulator	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Yeast one-hybrid screening identified three members of the Growth-Regulating Factor (GRF) family, OsGRF3, OsGRF4, and OsGRF11, as transcriptional regulators of OsbHLH35
CLA1|OsDXS1|OsDXS2	Os05g0408900	LOC_Os05g33840	seed	The organ-specific differential roles of rice DXS and DXR, the first two enzymes of the MEP pathway, in carotenoid metabolism in Oryza sativa leaves and seeds.	3-fold relative to non-transgenic (NT) seeds, while the overexpression of each OsDXS2 or OsDXR caused no positive effect on the accumulation of either carotenoids or chlorophylls in leaves and seeds, suggesting that OsDXS2 functions as a rate-limiting enzyme supplying IPP/DMAPPs to seed carotenoid metabolism, but OsDXR doesn&#39;t in either leaves or seeds
CLA1|OsDXS1|OsDXS2	Os05g0408900	LOC_Os05g33840	seed	The organ-specific differential roles of rice DXS and DXR, the first two enzymes of the MEP pathway, in carotenoid metabolism in Oryza sativa leaves and seeds.	CONCLUSION: Our study suggests that OsDXS2 plays an important role as a rate-limiting enzyme supplying IPP/DMAPPs to the seed-carotenoid accumulation, and rice seed carotenoid metabolism could be largely enhanced without any significant transcriptional alteration of carotenogenic genes
CLPP4|OsClpP4	Os10g0580800	LOC_Os10g43050	chloroplast	A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants	These observations provided further evidence that VYL plays a role in regulating chloroplast biogenesis and that VYL, OsClpP3, and OsClpP4 function together in the chloroplast Clp.
CLPP4|OsClpP4	Os10g0580800	LOC_Os10g43050	chloroplast	A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants	Notably, we found that OsClpPs, OsClpT, and OsClpR4 had similar expression patterns to VYL in wild-type plants, with peak mRNA accumulation at the early stage of chloroplast development.
CLSY1	Os07g0692600	LOC_Os07g49210	plant height	An epigenetic pathway in rice connects genetic variation to anaerobic germination and seedling establishment	We propose that truncation of the CLSY1 gene in rice may alter the RNA-guided DNA methylation pathway that leads to enhanced plant height in flooded environments due to changes in methylation profiles and overall changes in gene expression.
CLSY1	Os07g0692600	LOC_Os07g49210	anaerobic condition	An epigenetic pathway in rice connects genetic variation to anaerobic germination and seedling establishment	We identified a gene regulatory pathway that influences the AG trait through RdDm processes and determined that the CLSY1 gene contributes to the capacity of rice to germinate under anaerobic conditions.
CLSY1	Os07g0692600	LOC_Os07g49210	anoxia	An epigenetic pathway in rice connects genetic variation to anaerobic germination and seedling establishment	We propose that a mutation in the CLSY1 gene in rice influences the RdDm pathway leading to changes in methylation profiles and gene expression patterns, causing enhanced survival of seeds under anoxia and greater seedling establishment in flooded environments.
CLSY1	Os07g0692600	LOC_Os07g49210	flooded environment	An epigenetic pathway in rice connects genetic variation to anaerobic germination and seedling establishment	We propose that a mutation in the CLSY1 gene in rice influences the RdDm pathway leading to changes in methylation profiles and gene expression patterns, causing enhanced survival of seeds under anoxia and greater seedling establishment in flooded environments.
CNGC	Os02g0627700	LOC_Os02g41710	signaling pathway gene	Weighted Gene Co-Expression Network Coupled with a Critical-Time-Point Analysis during Pathogenesis for Predicting the Molecular Mechanism Underlying Blast Resistance in Rice	PPI was the significant affected pathway in both the pink module and the time-point of 24 hpi. Specially for the 24 hpi, LOC_Os02g41710 (CNGC) was the only MAPK signaling pathway gene that had lower expression in Piz-t-KJ201 as compared with NPB-KJ201.
COE1	Os08g0442700	LOC_Os08g34380	brassinosteroid	COE1, an LRR-RLK responsible for commissural vein pattern formation in rice	COE1 encodes a leucine-rich repeat receptor-like kinase, whose amino acid sequence is similar to that of brassinosteroid-insensitive 1-associated receptor kinase 1 (BAK1), and which is localized at the plasma membrane
COE1	Os08g0442700	LOC_Os08g34380	brassinosteroid	COE1, an LRR-RLK responsible for commissural vein pattern formation in rice	Because of the sequence similarity of COE1 to BAK1, we also examined the involvement of brassinosteroids in CV formation
COE1	Os08g0442700	LOC_Os08g34380	brassinosteroid	COE1, an LRR-RLK responsible for commissural vein pattern formation in rice	Brassinolide, an active brassinosteroid, decreased the CV intervals of wild-type rice, and brassinazole, an inhibitor of brassinosteroid biosynthesis, increased the CV intervals of wild-type rice, but coe1 mutants showed insensitivity to these chemicals
COE1	Os08g0442700	LOC_Os08g34380	brassinosteroid	COE1, an LRR-RLK responsible for commissural vein pattern formation in rice	These results suggest that auxin and brassinosteroids regulate CV intervals in opposite directions, and COE1 may regulate CV intervals downstream of auxin and brassinosteroid signals
COE1	Os08g0442700	LOC_Os08g34380	auxin	COE1, an LRR-RLK responsible for commissural vein pattern formation in rice	These results suggest that auxin and brassinosteroids regulate CV intervals in opposite directions, and COE1 may regulate CV intervals downstream of auxin and brassinosteroid signals
COG2	Os01g0899700	LOC_Os01g67390	stress	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	 COG2 encodes a cell wall-localized extensin and affects the compositions of cell wall, including pectin and cellulose, to defense the chilling stress
COG2	Os01g0899700	LOC_Os01g67390	defense	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	 COG2 encodes a cell wall-localized extensin and affects the compositions of cell wall, including pectin and cellulose, to defense the chilling stress
COG2	Os01g0899700	LOC_Os01g67390	tolerance	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	COG2 negatively regulates chilling tolerance through cell wall components altered in rice
COG2	Os01g0899700	LOC_Os01g67390	tolerance	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	Chilling-tolerant QTL gene COG2 encoded an extensin and repressed chilling tolerance by affecting the compositions of cell wall
COG2	Os01g0899700	LOC_Os01g67390	tolerance	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	 COG2 overexpression transgenic plants are sensitive to cold, whereas knockout transgenic lines enhance chilling tolerance
COG2	Os01g0899700	LOC_Os01g67390	cell wall	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	COG2 negatively regulates chilling tolerance through cell wall components altered in rice
COG2	Os01g0899700	LOC_Os01g67390	cell wall	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	Chilling-tolerant QTL gene COG2 encoded an extensin and repressed chilling tolerance by affecting the compositions of cell wall
COG2	Os01g0899700	LOC_Os01g67390	cell wall	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	 COG2 encodes a cell wall-localized extensin and affects the compositions of cell wall, including pectin and cellulose, to defense the chilling stress
COG2	Os01g0899700	LOC_Os01g67390	chilling	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	COG2 negatively regulates chilling tolerance through cell wall components altered in rice
COG2	Os01g0899700	LOC_Os01g67390	chilling	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	Chilling-tolerant QTL gene COG2 encoded an extensin and repressed chilling tolerance by affecting the compositions of cell wall
COG2	Os01g0899700	LOC_Os01g67390	chilling	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	 COG2 overexpression transgenic plants are sensitive to cold, whereas knockout transgenic lines enhance chilling tolerance
COG2	Os01g0899700	LOC_Os01g67390	chilling	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	 COG2 encodes a cell wall-localized extensin and affects the compositions of cell wall, including pectin and cellulose, to defense the chilling stress
COG2	Os01g0899700	LOC_Os01g67390	chilling stress	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	 COG2 encodes a cell wall-localized extensin and affects the compositions of cell wall, including pectin and cellulose, to defense the chilling stress
COG2	Os01g0899700	LOC_Os01g67390	chilling tolerance	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	COG2 negatively regulates chilling tolerance through cell wall components altered in rice
COG2	Os01g0899700	LOC_Os01g67390	chilling tolerance	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	Chilling-tolerant QTL gene COG2 encoded an extensin and repressed chilling tolerance by affecting the compositions of cell wall
COG2	Os01g0899700	LOC_Os01g67390	chilling tolerance	COG2 negatively regulates chilling tolerance through cell wall components altered in rice	 COG2 overexpression transgenic plants are sensitive to cold, whereas knockout transgenic lines enhance chilling tolerance
COLD1	Os04g0600800	LOC_Os04g51180	tolerance	COLD1 Confers Chilling Tolerance in Rice.	COLD1 Confers Chilling Tolerance in Rice.
COLD1	Os04g0600800	LOC_Os04g51180	tolerance	COLD1 Confers Chilling Tolerance in Rice.	Here, we identify the quantitative trait locus COLD1 that confers chilling tolerance in japonica rice
COLD1	Os04g0600800	LOC_Os04g51180	chilling	COLD1 Confers Chilling Tolerance in Rice.	COLD1 Confers Chilling Tolerance in Rice.
COLD1	Os04g0600800	LOC_Os04g51180	chilling	COLD1 Confers Chilling Tolerance in Rice.	Here, we identify the quantitative trait locus COLD1 that confers chilling tolerance in japonica rice
COLD1	Os04g0600800	LOC_Os04g51180	chilling	COLD1 Confers Chilling Tolerance in Rice.	We further identify that a SNP in COLD1, SNP2, originated from Chinese Oryza rufipogon, is responsible for the ability of COLD(jap/ind) to confer chilling tolerance, supporting the importance of COLD1 in plant adaptation
COLD1	Os04g0600800	LOC_Os04g51180	plasma membrane	COLD1 Confers Chilling Tolerance in Rice.	COLD1 encodes a regulator of G-protein signaling that localizes on plasma membrane and endoplasmic reticulum (ER)
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	disease	Proteomic analysis of rice defense response induced by probenazole	We propose that PAL, COMT, and GSTU17 are likely to confer PBZ-induced disease resistance via such functions as biosynthesis and transport of flavonoid-type phytoalexin and/or lignin biogenesis
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	disease resistance	Proteomic analysis of rice defense response induced by probenazole	We propose that PAL, COMT, and GSTU17 are likely to confer PBZ-induced disease resistance via such functions as biosynthesis and transport of flavonoid-type phytoalexin and/or lignin biogenesis
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	cytoplasm	Melatonin biosynthesis requires N-acetylserotonin methyltransferase activity of caffeic acid O-methyltransferase in rice.	Similar to AtCOMT, OsCOMT was localized in the cytoplasm
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	melatonin	Melatonin biosynthesis requires N-acetylserotonin methyltransferase activity of caffeic acid O-methyltransferase in rice	Melatonin biosynthesis requires N-acetylserotonin methyltransferase activity of caffeic acid O-methyltransferase in rice
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	melatonin biosynthesis	Melatonin biosynthesis requires N-acetylserotonin methyltransferase activity of caffeic acid O-methyltransferase in rice	Melatonin biosynthesis requires N-acetylserotonin methyltransferase activity of caffeic acid O-methyltransferase in rice
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	methyltransferase	Melatonin biosynthesis requires N-acetylserotonin methyltransferase activity of caffeic acid O-methyltransferase in rice	Melatonin biosynthesis requires N-acetylserotonin methyltransferase activity of caffeic acid O-methyltransferase in rice
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	cell wall	OsCAldOMT1 is a bifunctional O-methyltransferase involved in the biosynthesis of tricin-lignins in rice cell walls.	OsCAldOMT1 is a bifunctional O-methyltransferase involved in the biosynthesis of tricin-lignins in rice cell walls.
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	cell wall	OsCAldOMT1 is a bifunctional O-methyltransferase involved in the biosynthesis of tricin-lignins in rice cell walls.	 These data establish OsCAldOMT1 as a bifunctional O-methyltransferase predominantly involved in the two parallel metabolic pathways both dedicated to the biosynthesis of tricin-lignins in rice cell walls
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	leaf	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 Transgenic assays suggested that OsCOMT significantly delays leaf senescence at the grain filling stage by inhibiting degradation of chlorophyll and chloroplast, which, in turn, improves photosynthesis efficiency
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	leaf senescence	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 Transgenic assays suggested that OsCOMT significantly delays leaf senescence at the grain filling stage by inhibiting degradation of chlorophyll and chloroplast, which, in turn, improves photosynthesis efficiency
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	senescence	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 Transgenic assays suggested that OsCOMT significantly delays leaf senescence at the grain filling stage by inhibiting degradation of chlorophyll and chloroplast, which, in turn, improves photosynthesis efficiency
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	vascular bundle	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 In addition, the number and size of vascular bundles in the culms and leaves were significantly increased in the OsCOMT-overexpressing plants, while decreased in the knockout plants, suggesting that OsCOMT plays a positive role in vascular development of rice
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	development	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 In addition, the number and size of vascular bundles in the culms and leaves were significantly increased in the OsCOMT-overexpressing plants, while decreased in the knockout plants, suggesting that OsCOMT plays a positive role in vascular development of rice
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	grain	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 Transgenic assays suggested that OsCOMT significantly delays leaf senescence at the grain filling stage by inhibiting degradation of chlorophyll and chloroplast, which, in turn, improves photosynthesis efficiency
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	grain	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 More importantly, we found that OsCOMT is a positive regulator of grain yield, and overexpression of OsCOMT increase grain yield per plant even in a high-yield variety background, suggesting that OsCOMT can be used as an important target for enhancing rice yield
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	photosynthesis	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 Transgenic assays suggested that OsCOMT significantly delays leaf senescence at the grain filling stage by inhibiting degradation of chlorophyll and chloroplast, which, in turn, improves photosynthesis efficiency
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	grain filling	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 Transgenic assays suggested that OsCOMT significantly delays leaf senescence at the grain filling stage by inhibiting degradation of chlorophyll and chloroplast, which, in turn, improves photosynthesis efficiency
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	grain yield	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 More importantly, we found that OsCOMT is a positive regulator of grain yield, and overexpression of OsCOMT increase grain yield per plant even in a high-yield variety background, suggesting that OsCOMT can be used as an important target for enhancing rice yield
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	yield	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 More importantly, we found that OsCOMT is a positive regulator of grain yield, and overexpression of OsCOMT increase grain yield per plant even in a high-yield variety background, suggesting that OsCOMT can be used as an important target for enhancing rice yield
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	melatonin	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 In vitro and in vivo evidence revealed that OsCOMT is involved in melatonin biosynthesis
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	melatonin biosynthesis	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 In vitro and in vivo evidence revealed that OsCOMT is involved in melatonin biosynthesis
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	vascular development	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 In addition, the number and size of vascular bundles in the culms and leaves were significantly increased in the OsCOMT-overexpressing plants, while decreased in the knockout plants, suggesting that OsCOMT plays a positive role in vascular development of rice
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	chlorophyll	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	 Transgenic assays suggested that OsCOMT significantly delays leaf senescence at the grain filling stage by inhibiting degradation of chlorophyll and chloroplast, which, in turn, improves photosynthesis efficiency
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	cellulose	Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants.	 Further, OsCAldOMT1 deficiency contributed to the increase of the cellulose molecular mobility more prominently than OsCAD2 deficiency, resulting in apparently more loosened lignocellulose molecular assembly
COMT|OsCOMT|OsCAldOMT1|ROMT9	Os08g0157500	LOC_Os08g06100	cell wall	Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants.	 A set of rice mutants harboring knockout mutations in either or both OsCAldOMT1 and OsCAD2 was generated in part by genome editing and subjected to comparative cell wall chemical and supramolecular structure analyses
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flower	The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice	In spite of its prolonged juvenile phase, the pps-1 mutant flowers early, and this is associated with derepression of RAP1B expression in pps-1 plants independently of the Hd1-Hd3a/RFT1 photoperiodic pathway
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flower	The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice	Its ability to regulate the vegetative phase change and the time of flowering suggests that rice PPS acquired novel functions during the evolution of rice/monocots
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	reproductive	The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice	The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	reproductive	Role of rice PPS in late vegetative and reproductive growth	Although the early vegetative phase and flowering time of pps-1 have been closely examined, the phenotypes in the late vegetative and reproductive phases are not yet well understood
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	reproductive	Role of rice PPS in late vegetative and reproductive growth	Role of rice PPS in late vegetative and reproductive growth
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	panicle	Role of rice PPS in late vegetative and reproductive growth	Moreover, pps-1 had a small inflorescence meristem and small panicles
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	panicle	Role of rice PPS in late vegetative and reproductive growth	These phenotypes indicate that in pps-1 the juvenile phase coexists with the late vegetative phase, resulting in small panicles
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	inflorescence	Role of rice PPS in late vegetative and reproductive growth	Moreover, pps-1 had a small inflorescence meristem and small panicles
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	vegetative	The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice	Its ability to regulate the vegetative phase change and the time of flowering suggests that rice PPS acquired novel functions during the evolution of rice/monocots
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	vegetative	The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice	The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	ga	Role of rice PPS in late vegetative and reproductive growth	Double mutant (d18-k pps-1) showed the same phenotype as the pps-1, indicating that PPS is upstream of GA biosynthetic genes
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	growth	Role of rice PPS in late vegetative and reproductive growth	Role of rice PPS in late vegetative and reproductive growth
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	leaf	Role of rice PPS in late vegetative and reproductive growth	In the ninth leaf blade of pps-1, the relative length of the midrib was comparable to the sixth leaf blade of wild-type
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	meristem	Role of rice PPS in late vegetative and reproductive growth	Moreover, pps-1 had a small inflorescence meristem and small panicles
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	ga	The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice	The pps-1 mutant exhibits delayed expression of miR156 and miR172 and the suppression of GA biosynthetic genes, reducing the GA(3) content in this mutant
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flowering time	Role of rice PPS in late vegetative and reproductive growth	Although the early vegetative phase and flowering time of pps-1 have been closely examined, the phenotypes in the late vegetative and reproductive phases are not yet well understood
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flower	Role of rice PPS in late vegetative and reproductive growth	The rice peter pan syndrome-1 (pps-1) mutant shows a prolonged juvenile phase and early flowering
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flower	Role of rice PPS in late vegetative and reproductive growth	Although the early vegetative phase and flowering time of pps-1 have been closely examined, the phenotypes in the late vegetative and reproductive phases are not yet well understood
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	vegetative	Role of rice PPS in late vegetative and reproductive growth	Although the early vegetative phase and flowering time of pps-1 have been closely examined, the phenotypes in the late vegetative and reproductive phases are not yet well understood
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	vegetative	Role of rice PPS in late vegetative and reproductive growth	These phenotypes indicate that in pps-1 the juvenile phase coexists with the late vegetative phase, resulting in small panicles
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	vegetative	Role of rice PPS in late vegetative and reproductive growth	Role of rice PPS in late vegetative and reproductive growth
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	development	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	development	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	These results demonstrate that OsCOP1 is associated with embryo development and flavonoid biosynthesis in rice grains
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	seed	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	Novel mutations of OsCOP1 were identified to be responsible for yellowish pericarp and embryo lethal phenotype, which revealed that OsCOP1 plays a crucial role in flavonoid biosynthesis and embryogenesis in rice seed
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	seed	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	CRISPR/Cas9-targeted mutagenesis was used to knock out OsCOP1 by targeting its functional domains, and transgenic seed displayed the yel mutant phenotype
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	endosperm	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	Overexpression of OsCOP1 in a homozygous yel-hc mutant background restored pericarp color, and the aberrant flavonoid accumulation observed in yel-hc mutant was significantly reduced in the embryo and endosperm
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flavonoid	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flavonoid	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	Novel mutations of OsCOP1 were identified to be responsible for yellowish pericarp and embryo lethal phenotype, which revealed that OsCOP1 plays a crucial role in flavonoid biosynthesis and embryogenesis in rice seed
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flavonoid	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	Overexpression of OsCOP1 in a homozygous yel-hc mutant background restored pericarp color, and the aberrant flavonoid accumulation observed in yel-hc mutant was significantly reduced in the embryo and endosperm
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flavonoid	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	These results demonstrate that OsCOP1 is associated with embryo development and flavonoid biosynthesis in rice grains
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	flavonoid	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	This study will facilitate a better understanding of the functional roles of OsCOP1 involved in early embryogenesis and flavonoid biosynthesis in rice seeds
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	pericarp	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	Novel mutations of OsCOP1 were identified to be responsible for yellowish pericarp and embryo lethal phenotype, which revealed that OsCOP1 plays a crucial role in flavonoid biosynthesis and embryogenesis in rice seed
COP1|PPS|OsCOP1	Os02g0771100	LOC_Os02g53140	pericarp	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.)	Overexpression of OsCOP1 in a homozygous yel-hc mutant background restored pericarp color, and the aberrant flavonoid accumulation observed in yel-hc mutant was significantly reduced in the embryo and endosperm
COPT1	Os01g0770700	LOC_Os01g56420	CxC motif	Molecular and functional analyses of COPT/Ctr-type copper transporter-like gene family in rice 	The CC motif has been detected in rice COPT1, COPT2, and COPT5 and CxC motif in rice COPT6 and COPT7 at the C-termini (Figure <U+200B>(Figure22).
COPT1	Os01g0770700	LOC_Os01g56420	shoot	Molecular and functional analyses of COPT/Ctr-type copper transporter-like gene family in rice 	Zn deficiency induced COPT1, COPT5, and COPT7 and slightly suppressed COPT4 in root and induced COPT5, COPT6, and COPT7 in shoot. 
COPT1	Os01g0770700	LOC_Os01g56420	shoot	Molecular and functional analyses of COPT/Ctr-type copper transporter-like gene family in rice 	Overexpressing COPT1 or COPT5 or suppressing COPT1 or COPT5 in rice had no influence on Fe, Mn, and Zn contents in rice shoot
COPT1	Os01g0770700	LOC_Os01g56420	xylem	Molecular and functional analyses of COPT/Ctr-type copper transporter-like gene family in rice 	 Rice COPT1, COPT5, and XA13 cooperate to promote removal of Cu from rice xylem vessels, where Xoo multiplies and spreads to cause disease
COPT1	Os01g0770700	LOC_Os01g56420	copper accumulation	The key micronutrient copper orchestrates broad-spectrum virus resistance in rice	Loss-of-function mutations in HMA5, COPT1, and COPT5 caused a significant reduction in copper accumulation and plant viral resistance because of the increased SPL9-mediated miR528 transcription.
COPT1	Os01g0770700	LOC_Os01g56420	viral resistance	The key micronutrient copper orchestrates broad-spectrum virus resistance in rice	Loss-of-function mutations in HMA5, COPT1, and COPT5 caused a significant reduction in copper accumulation and plant viral resistance because of the increased SPL9-mediated miR528 transcription.
COPT5	Os05g0424700	LOC_Os05g35050	shoot	Molecular and functional analyses of COPT/Ctr-type copper transporter-like gene family in rice	Zn deficiency induced COPT1, COPT5, and COPT7 and slightly suppressed COPT4 in root and induced COPT5, COPT6, and COPT7 in shoot.
COPT5	Os05g0424700	LOC_Os05g35050	resistance	The key micronutrient copper orchestrates broad-spectrum virus resistance in rice.	 Loss-of-function mutations in HMA5, COPT1, and COPT5 caused a significant reduction in copper accumulation and plant viral resistance because of the increased SPL9-mediated miR528 transcription
COPT5	Os05g0424700	LOC_Os05g35050	copper	The key micronutrient copper orchestrates broad-spectrum virus resistance in rice.	 Loss-of-function mutations in HMA5, COPT1, and COPT5 caused a significant reduction in copper accumulation and plant viral resistance because of the increased SPL9-mediated miR528 transcription
COPT5	Os05g0424700	LOC_Os05g35050	copper accumulation	The key micronutrient copper orchestrates broad-spectrum virus resistance in rice	Loss-of-function mutations in HMA5, COPT1, and COPT5 caused a significant reduction in copper accumulation and plant viral resistance because of the increased SPL9-mediated miR528 transcription.
COPT5	Os05g0424700	LOC_Os05g35050	viral resistance	The key micronutrient copper orchestrates broad-spectrum virus resistance in rice	Loss-of-function mutations in HMA5, COPT1, and COPT5 caused a significant reduction in copper accumulation and plant viral resistance because of the increased SPL9-mediated miR528 transcription.
COX11|OsCOX11	Os03g0718600	LOC_Os03g50940	cell death	A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice	In CMS-WA lines, WA352 accumulates preferentially in the anther tapetum, thereby inhibiting COX11 function in peroxide metabolism and triggering premature tapetal programmed cell death and consequent pollen abortion
COX11|OsCOX11	Os03g0718600	LOC_Os03g50940	tapetum	A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice	In CMS-WA lines, WA352 accumulates preferentially in the anther tapetum, thereby inhibiting COX11 function in peroxide metabolism and triggering premature tapetal programmed cell death and consequent pollen abortion
COX11|OsCOX11	Os03g0718600	LOC_Os03g50940	pollen	A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice	In CMS-WA lines, WA352 accumulates preferentially in the anther tapetum, thereby inhibiting COX11 function in peroxide metabolism and triggering premature tapetal programmed cell death and consequent pollen abortion
COX11|OsCOX11	Os03g0718600	LOC_Os03g50940	anther	A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice	In CMS-WA lines, WA352 accumulates preferentially in the anther tapetum, thereby inhibiting COX11 function in peroxide metabolism and triggering premature tapetal programmed cell death and consequent pollen abortion
COX11|OsCOX11	Os03g0718600	LOC_Os03g50940	mitochondria	A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice	Here we report that a new mitochondrial gene, WA352, which originated recently in wild rice, confers CMS-WA because the protein it encodes interacts with the nuclear-encoded mitochondrial protein COX11
COX11|OsCOX11	Os03g0718600	LOC_Os03g50940	tapetal	A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice	In CMS-WA lines, WA352 accumulates preferentially in the anther tapetum, thereby inhibiting COX11 function in peroxide metabolism and triggering premature tapetal programmed cell death and consequent pollen abortion
coxVb|COX5b	Os01g0612200	LOC_Os01g42650	mitochondria	Identification of cDNA encoding cytochrome c oxidase subunit 5c (COX5c) from rice. Comparison of its expression with nuclear-encoded and mitochondrial-encoded COX genes	Furthermore, we compared the expression patterns of the nuclear-encoded COX5c and COX5b genes with the expression pattern of the mitochondrial-encoded COX1 gene among several organs by Northern blot analysis
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	growth	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	UV-B radiation damages nuclear, chloroplast and mitochondrial DNA by the formation of cyclobutane pyrimidine dimers (CPDs), which are the primary UV-B-induced DNA lesions, and are a principal cause of UV-B-induced growth inhibition in plants
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	resistant	Spontaneously occurring mutations in the cyclobutane pyrimidine dimer photolyase gene cause different sensitivities to ultraviolet-B in rice	We previously indicated that UV-resistant rice cultivars are better able to repair cyclobutane pyrimidine dimers (CPDs) through photorepair than are UV-sensitive cultivars
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	resistant	Spontaneously occurring mutations in the cyclobutane pyrimidine dimer photolyase gene cause different sensitivities to ultraviolet-B in rice	Surjamkhi (indica) exhibited greater sensitivity to UVB radiation and was more deficient in CPD photorepair ability compared with UV-resistant Sasanishiki (japonica)
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	breeding	Ultraviolet-B sensitivities in Japanese lowland rice cultivars: cyclobutane pyrimidine dimer photolyase activity and gene mutation	In order to verify that suggestion, we examined the correlation between UVB sensitivity and CPD photolyase activity in 17 rice cultivars of progenitors and relatives in breeding of UV-resistant Sasanishiki and UV-sensitive Norin 1
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	mitochondria	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	UV-B radiation damages nuclear, chloroplast and mitochondrial DNA by the formation of cyclobutane pyrimidine dimers (CPDs), which are the primary UV-B-induced DNA lesions, and are a principal cause of UV-B-induced growth inhibition in plants
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	mitochondria	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	To date, the CPD repair processes in plant chloroplasts and mitochondria remain poorly understood
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	mitochondria	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	Here, we report the photoreactivation of CPDs in chloroplast and mitochondrial DNA in rice
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	mitochondria	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	Biochemical and subcellular localization analyses using rice strains with different levels of CPD photolyase activity and transgenic rice strains showed that full-length CPD photolyase is encoded by a single gene, not a splice variant, and is expressed and targeted not only to nuclei but also to chloroplasts and mitochondria
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	mitochondria	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	The results indicate that rice may have evolved a CPD photolyase that functions in chloroplasts, mitochondria and nuclei, and that contains DNA to protect cells from the harmful effects of UV-B radiation
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	mitochondria	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	chloroplast	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	UV-B radiation damages nuclear, chloroplast and mitochondrial DNA by the formation of cyclobutane pyrimidine dimers (CPDs), which are the primary UV-B-induced DNA lesions, and are a principal cause of UV-B-induced growth inhibition in plants
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	chloroplast	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	To date, the CPD repair processes in plant chloroplasts and mitochondria remain poorly understood
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	chloroplast	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	Here, we report the photoreactivation of CPDs in chloroplast and mitochondrial DNA in rice
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	chloroplast	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	Biochemical and subcellular localization analyses using rice strains with different levels of CPD photolyase activity and transgenic rice strains showed that full-length CPD photolyase is encoded by a single gene, not a splice variant, and is expressed and targeted not only to nuclei but also to chloroplasts and mitochondria
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	chloroplast	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	The results indicate that rice may have evolved a CPD photolyase that functions in chloroplasts, mitochondria and nuclei, and that contains DNA to protect cells from the harmful effects of UV-B radiation
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	chloroplast	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	growth	Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation	7-fold higher CPD photolyase activities than the wild-type, respectively, were significantly more resistant to UVB-induced growth damage, and maintained significantly lower CPD levels in their leaves during growth under elevated UVB radiation
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	growth	Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation	Conversely, the AS-D plant had little photolyase activity, was severely damaged by elevated UVB radiation, and maintained higher CPD levels in its leaves during growth under UVB radiation
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	growth	Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation	Notably, the S-C plant was not more resistant to UVB-induced growth inhibition than the S-B plant, even though it had much higher CPD photolyase activity
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	growth	Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation	These results strongly indicate that UVB-induced CPDs are one of principal causes of UVB-induced growth inhibition in rice plants grown under supplementary UVB radiation, and that increasing CPD photolyase activity can significantly alleviate UVB-caused growth inhibition in rice
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	growth	Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation	Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	resistant	Ultraviolet-B sensitivities in Japanese lowland rice cultivars: cyclobutane pyrimidine dimer photolyase activity and gene mutation	In order to verify that suggestion, we examined the correlation between UVB sensitivity and CPD photolyase activity in 17 rice cultivars of progenitors and relatives in breeding of UV-resistant Sasanishiki and UV-sensitive Norin 1
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	breeding	Spontaneously occurring mutations in the cyclobutane pyrimidine dimer photolyase gene cause different sensitivities to ultraviolet-B in rice	These results suggest that spontaneously occurring mutations in the CPD photolyase gene cause different degrees of sensitivity to UVB in rice, and that the resistance of rice to UVB radiation could be increased by increasing the photolyase function through conventional breeding or bioengineering
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	resistant	qUVR-10, a major quantitative trait locus for ultraviolet-B resistance in rice, encodes cyclobutane pyrimidine dimer photolyase	Plants homozygous for the Nipponbare allele at the qUVR-10 locus were more resistant to UVB compared with the Kasalath allele
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	resistant	Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation	Here, we tested whether CPD photolyase function determines the UVB sensitivity of rice (Oryza sativa) by generating transgenic rice plants bearing the CPD photolyase gene of the UV-resistant rice cultivar Sasanishiki in the sense orientation (S-B and S-C lines) or the antisense orientation (AS-D line)
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	resistant	Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation	7-fold higher CPD photolyase activities than the wild-type, respectively, were significantly more resistant to UVB-induced growth damage, and maintained significantly lower CPD levels in their leaves during growth under elevated UVB radiation
CPD|OsCPDP|qUVR-10	Os10g0167600	LOC_Os10g08580	resistant	Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation	Notably, the S-C plant was not more resistant to UVB-induced growth inhibition than the S-B plant, even though it had much higher CPD photolyase activity
CPT1	Os02g0568200	LOC_Os02g35970	auxin	The Rice COLEOPTILE PHOTOTROPISM1 gene encoding an ortholog of Arabidopsis NPH3 is required for phototropism of coleoptiles and lateral translocation of auxin	However, no asymmetry was induced in cpt1 coleoptiles, indicating that lateral translocation of auxin occurs downstream of CPT1
CPT1	Os02g0568200	LOC_Os02g35970	auxin	The Rice COLEOPTILE PHOTOTROPISM1 gene encoding an ortholog of Arabidopsis NPH3 is required for phototropism of coleoptiles and lateral translocation of auxin	It is concluded that the CPT1-dependent major phototropism of coleoptiles is achieved by lateral auxin translocation and subsequent growth redistribution
CPT1	Os02g0568200	LOC_Os02g35970	growth	The Rice COLEOPTILE PHOTOTROPISM1 gene encoding an ortholog of Arabidopsis NPH3 is required for phototropism of coleoptiles and lateral translocation of auxin	In an extended study with the cpt1 mutant, it was found that phototropic differential growth is accompanied by a CPT1-independent inhibition of net growth
CPT1	Os02g0568200	LOC_Os02g35970	growth	The Rice COLEOPTILE PHOTOTROPISM1 gene encoding an ortholog of Arabidopsis NPH3 is required for phototropism of coleoptiles and lateral translocation of auxin	This response, induced only transiently, was thought to be caused by the CPT1-independent growth inhibition
CPT1	Os02g0568200	LOC_Os02g35970	growth	The Rice COLEOPTILE PHOTOTROPISM1 gene encoding an ortholog of Arabidopsis NPH3 is required for phototropism of coleoptiles and lateral translocation of auxin	It is concluded that the CPT1-dependent major phototropism of coleoptiles is achieved by lateral auxin translocation and subsequent growth redistribution
CRC1	Os04g0479000	LOC_Os04g40290	meiosis	Central region component1, a novel synaptonemal complex component, is essential for meiotic recombination initiation in rice	CRC1 interacts with homologous pairing aberration in rice meiosis1 (PAIR1) in vitro, suggesting that these proteins act as a complex to promote DSB formation
CRC1	Os04g0479000	LOC_Os04g40290	meiotic	Central region component1, a novel synaptonemal complex component, is essential for meiotic recombination initiation in rice	Additionally, we provide evidence that CRC1 is essential for meiotic DSB formation
CRC1	Os04g0479000	LOC_Os04g40290	meiotic	Central region component1, a novel synaptonemal complex component, is essential for meiotic recombination initiation in rice	We found that CRC1 is also essential for the recruitment of PAIR2 onto meiotic chromosomes
CRD1	Os01g0363900	LOC_Os01g26160	stem	CRD1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.	CRD1 is ubiquitously expressed, with the highest expression levels in the crown root primordium at the stem base
CRD1	Os01g0363900	LOC_Os01g26160	root	CRD1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.	CRD1 is ubiquitously expressed, with the highest expression levels in the crown root primordium at the stem base
CRD1	Os01g0363900	LOC_Os01g26160	root	CRD1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.	The altered crown root phenotype of crd1 was simulated by target mimicry of miR156, suggesting that this defect is due to the disruption of miR156 regulatory pathways
CRD1	Os01g0363900	LOC_Os01g26160	cytoplasm	CRD1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.	The crd1 mutant contains significantly reduced miRNA levels in the cytoplasm and nucleus, suggesting that CRD1 is essential for maintaining normal miRNA levels in plant cells
CRD1	Os01g0363900	LOC_Os01g26160	crown	CRD1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.	CRD1 is ubiquitously expressed, with the highest expression levels in the crown root primordium at the stem base
CRD1	Os01g0363900	LOC_Os01g26160	crown	CRD1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.	The altered crown root phenotype of crd1 was simulated by target mimicry of miR156, suggesting that this defect is due to the disruption of miR156 regulatory pathways
CRD1	Os01g0363900	LOC_Os01g26160	crown root	CRD1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.	CRD1 is ubiquitously expressed, with the highest expression levels in the crown root primordium at the stem base
CRD1	Os01g0363900	LOC_Os01g26160	crown root	CRD1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.	The altered crown root phenotype of crd1 was simulated by target mimicry of miR156, suggesting that this defect is due to the disruption of miR156 regulatory pathways
CRK10	Os07g0541500	LOC_Os07g35700	immunity	A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.	These experiments demonstrate a requirement for CRKs in NH1-mediated immunity and establish a molecular link between NH1 and induction of CRK10 expression
CRK10	Os07g0541500	LOC_Os07g35700	immune response	A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.	We identified a rice mutant in the Kitaake genetic background with a frameshift mutation in crk10; this mutant also displays a compromised immune response highlighting the important role of crk10
CRK6	Os07g0541400	LOC_Os07g35690	immunity	A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.	These results confirm the requirement of CRK6 and CRK10 for NH1-mediated immunity.
CRK6	Os07g0541400	LOC_Os07g35690	immune response	A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.	Here we provide direct and robust genetic evidence that the CRK6 and CRK10 genes mediate BTH-induced immune response.
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	lateral root	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	We investigated Na+ uptake and bypass flow in lateral rootless mutants (lrt1, lrt2), a crown rootless mutant (crl1), their wild types (Oochikara, Nipponbare and Taichung 65, respectively) and in seedlings of rice cv
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	lateral root	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	ethylene	ARL1, a LOB-domain protein required for adventitious root formation in rice	ARL1 is an auxin- and ethylene-responsive gene, and the expression pattern of ARL1 in roots parallels auxin distribution
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	lateral root	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	The crl1 mutant showed additional auxin-related abnormal phenotypic traits in the roots, such as decreased lateral root number, auxin insensitivity in lateral root formation, and impaired root gravitropism, whereas no abnormal phenotypic traits were observed in aboveground organs
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	lateral root	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	Expression of Crl1, which encodes a member of the plant-specific ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES protein family, was localized in tissues where crown and lateral roots are initiated and overlapped with beta-glucuronidase staining controlled by the DR5 promoter
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	lateral root	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	We conclude that Crl1 encodes a positive regulator for crown and lateral root formation and that its expression is directly regulated by an ARF in the auxin signaling pathway
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	We characterized a rice (Oryza sativa) mutant defective in crown root formation, crown rootless1 (crl1)
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	defense	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	The lines with overexpression showed constitutive expression of many defense-related genes, such as PBZ1 and OsSci2, as well as early auxin-response genes, such as OsIAA4 and OsCrl1 genes
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	adventitious root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A crl1 crl5 double mutant displayed an additive phenotype, indicating that these two genes function in different genetic pathways for crown root initiation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	We characterized a rice (Oryza sativa) mutant defective in crown root formation, crown rootless1 (crl1)
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	The crl1 mutant showed additional auxin-related abnormal phenotypic traits in the roots, such as decreased lateral root number, auxin insensitivity in lateral root formation, and impaired root gravitropism, whereas no abnormal phenotypic traits were observed in aboveground organs
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	Expression of Crl1, which encodes a member of the plant-specific ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES protein family, was localized in tissues where crown and lateral roots are initiated and overlapped with beta-glucuronidase staining controlled by the DR5 promoter
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	We conclude that Crl1 encodes a positive regulator for crown and lateral root formation and that its expression is directly regulated by an ARF in the auxin signaling pathway
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	The lines with overexpression showed constitutive expression of many defense-related genes, such as PBZ1 and OsSci2, as well as early auxin-response genes, such as OsIAA4 and OsCrl1 genes
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	The crl1 mutant showed additional auxin-related abnormal phenotypic traits in the roots, such as decreased lateral root number, auxin insensitivity in lateral root formation, and impaired root gravitropism, whereas no abnormal phenotypic traits were observed in aboveground organs
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	Exogenous auxin treatment induced Crl1 expression without de novo protein biosynthesis, and this induction required the degradation of AUXIN/INDOLE-3-ACETIC ACID proteins
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	Crl1 contains two putative auxin response elements (AuxREs) in its promoter region
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	The proximal AuxRE specifically interacted with a rice AUXIN RESPONSE FACTOR (ARF) and acted as a cis-motif for Crl1 expression
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	We conclude that Crl1 encodes a positive regulator for crown and lateral root formation and that its expression is directly regulated by an ARF in the auxin signaling pathway
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	We investigated Na+ uptake and bypass flow in lateral rootless mutants (lrt1, lrt2), a crown rootless mutant (crl1), their wild types (Oochikara, Nipponbare and Taichung 65, respectively) and in seedlings of rice cv
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A crl1 crl5 double mutant displayed an additive phenotype, indicating that these two genes function in different genetic pathways for crown root initiation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	We characterized a rice (Oryza sativa) mutant defective in crown root formation, crown rootless1 (crl1)
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	Expression of Crl1, which encodes a member of the plant-specific ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES protein family, was localized in tissues where crown and lateral roots are initiated and overlapped with beta-glucuronidase staining controlled by the DR5 promoter
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling	We conclude that Crl1 encodes a positive regulator for crown and lateral root formation and that its expression is directly regulated by an ARF in the auxin signaling pathway
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	We investigated Na+ uptake and bypass flow in lateral rootless mutants (lrt1, lrt2), a crown rootless mutant (crl1), their wild types (Oochikara, Nipponbare and Taichung 65, respectively) and in seedlings of rice cv
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	stem	ARL1, a LOB-domain protein required for adventitious root formation in rice	Our findings suggest that ARL1 is an auxin-responsive factor involved in auxin-mediated cell dedifferentiation, and that it promotes the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder in the stem
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	ARL1, a LOB-domain protein required for adventitious root formation in rice	The gene, designated Adventitious rootless1 (ARL1), encodes a protein with a LATERAL ORGAN BOUNDARIES (LOB) domain
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	ARL1, a LOB-domain protein required for adventitious root formation in rice	ARL1 is an auxin- and ethylene-responsive gene, and the expression pattern of ARL1 in roots parallels auxin distribution
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	ARL1, a LOB-domain protein required for adventitious root formation in rice	ARL1, a LOB-domain protein required for adventitious root formation in rice
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	ARL1, a LOB-domain protein required for adventitious root formation in rice	ARL1 is an auxin- and ethylene-responsive gene, and the expression pattern of ARL1 in roots parallels auxin distribution
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	ARL1, a LOB-domain protein required for adventitious root formation in rice	Our findings suggest that ARL1 is an auxin-responsive factor involved in auxin-mediated cell dedifferentiation, and that it promotes the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder in the stem
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	We investigated Na+ uptake and bypass flow in lateral rootless mutants (lrt1, lrt2), a crown rootless mutant (crl1), their wild types (Oochikara, Nipponbare and Taichung 65, respectively) and in seedlings of rice cv
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	seedling	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	We investigated Na+ uptake and bypass flow in lateral rootless mutants (lrt1, lrt2), a crown rootless mutant (crl1), their wild types (Oochikara, Nipponbare and Taichung 65, respectively) and in seedlings of rice cv
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	adventitious root	ARL1, a LOB-domain protein required for adventitious root formation in rice	The gene, designated Adventitious rootless1 (ARL1), encodes a protein with a LATERAL ORGAN BOUNDARIES (LOB) domain
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	adventitious root	ARL1, a LOB-domain protein required for adventitious root formation in rice	ARL1, a LOB-domain protein required for adventitious root formation in rice
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	shoot	Studies on sodium bypass flow in lateral rootless mutants lrt1 and lrt2, and crown rootless mutant crl1 of rice (Oryza sativa L.)	The results showed that shoot Na+ concentration in lrt1, lrt2 and crl1 was lower (by 20-23%) than that of their wild types
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A crl1 crl5 double mutant displayed an additive phenotype, indicating that these two genes function in different genetic pathways for crown root initiation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	cell division	ARL1, a LOB-domain protein required for adventitious root formation in rice	Our findings suggest that ARL1 is an auxin-responsive factor involved in auxin-mediated cell dedifferentiation, and that it promotes the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder in the stem
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	In rice (Oryza sativa), auxin promotes crown root initiation via the LOB-domain transcription factor (LBD) transcription factor CROWN ROOTLESS1 (CRL1); however, the gene regulatory network downstream of CRL1 remains largely unknown
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	We tested CRL1 transcriptional activity in yeast and in planta, identified CRL1-regulated genes using an inducible gene expression system and a transcriptome analysis, and used in situ hybridization to demonstrate coexpression of a sample of CRL1-regulated genes with CRL1 in crown root primordia
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	transcription factor	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	In rice (Oryza sativa), auxin promotes crown root initiation via the LOB-domain transcription factor (LBD) transcription factor CROWN ROOTLESS1 (CRL1); however, the gene regulatory network downstream of CRL1 remains largely unknown
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	meristem	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	We show that CRL1 positively regulates 277 genes, including key genes involved in meristem patterning (such as QUIESCENT-CENTER SPECIFIC HOMEOBOX; QHB), cell proliferation and hormone homeostasis
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	auxin	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	In rice (Oryza sativa), auxin promotes crown root initiation via the LOB-domain transcription factor (LBD) transcription factor CROWN ROOTLESS1 (CRL1); however, the gene regulatory network downstream of CRL1 remains largely unknown
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	homeostasis	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	We show that CRL1 positively regulates 277 genes, including key genes involved in meristem patterning (such as QUIESCENT-CENTER SPECIFIC HOMEOBOX; QHB), cell proliferation and hormone homeostasis
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	In rice (Oryza sativa), auxin promotes crown root initiation via the LOB-domain transcription factor (LBD) transcription factor CROWN ROOTLESS1 (CRL1); however, the gene regulatory network downstream of CRL1 remains largely unknown
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	We tested CRL1 transcriptional activity in yeast and in planta, identified CRL1-regulated genes using an inducible gene expression system and a transcriptome analysis, and used in situ hybridization to demonstrate coexpression of a sample of CRL1-regulated genes with CRL1 in crown root primordia
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	In rice (Oryza sativa), auxin promotes crown root initiation via the LOB-domain transcription factor (LBD) transcription factor CROWN ROOTLESS1 (CRL1); however, the gene regulatory network downstream of CRL1 remains largely unknown
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	We tested CRL1 transcriptional activity in yeast and in planta, identified CRL1-regulated genes using an inducible gene expression system and a transcriptome analysis, and used in situ hybridization to demonstrate coexpression of a sample of CRL1-regulated genes with CRL1 in crown root primordia
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	transcription factor	CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice.	 Here, we show that CRL1 can bind, both in vitro and in vivo, not only the LBD-box, a DNA sequence recognized by several ASL/LBD transcription factors, but also another not previously identified DNA motif that was named CRL1-box
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice.	 Finally, we show that OsbHLH044 represses a regulatory module, uncovering how CRL1 regulates specific processes during crown root formation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice.	 Finally, we show that OsbHLH044 represses a regulatory module, uncovering how CRL1 regulates specific processes during crown root formation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice.	 Finally, we show that OsbHLH044 represses a regulatory module, uncovering how CRL1 regulates specific processes during crown root formation
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 CRL1 enhances OsCKX4 activation through direct interaction with WOX11 at root emergence and elongation stages
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Increased expression of OsCKX4 could partially complement the crown root phenotypes of both crl1 and wox11 mutants
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	root development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	cytokinin	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	homeostasis	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Increased expression of OsCKX4 could partially complement the crown root phenotypes of both crl1 and wox11 mutants
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
CRL1|ARL1	Os03g0149100	LOC_Os03g05510	crown root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Increased expression of OsCKX4 could partially complement the crown root phenotypes of both crl1 and wox11 mutants
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	anther	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family	RT-PCR and analysis of promoter::GUS transgenic plants showed that OsGNOM1 is expressed in AR primordia, vascular tissues, LRs, root tips, leaves, anthers and lemma veins, with a distribution pattern similar to that of auxin
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	crown root	CRL4 regulates crown root formation through auxin transport in rice	) mutant crown rootless4 (crl4) that was found to have defective crown root formation
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	crown root	CRL4 regulates crown root formation through auxin transport in rice	Besides reduced crown root number, the crl4 mutant showed auxin-related abnormal phenotypical character-istics such as reduced lateral root number and impaired root gravitropism
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	crown root	CRL4 regulates crown root formation through auxin transport in rice	These results indicate that maintaining an appropriate auxin accumulation and gradient through CRL4 in the basal portion of shoots is essential for crown root formation in rice
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	crown root	CRL4 regulates crown root formation through auxin transport in rice	CRL4 regulates crown root formation through auxin transport in rice
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	lemma	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family	RT-PCR and analysis of promoter::GUS transgenic plants showed that OsGNOM1 is expressed in AR primordia, vascular tissues, LRs, root tips, leaves, anthers and lemma veins, with a distribution pattern similar to that of auxin
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	auxin	CRL4 regulates crown root formation through auxin transport in rice	Besides reduced crown root number, the crl4 mutant showed auxin-related abnormal phenotypical character-istics such as reduced lateral root number and impaired root gravitropism
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	auxin	CRL4 regulates crown root formation through auxin transport in rice	CRL4 encodes a protein highly homologous with Arabidopsis GNOM, which mediates auxin-dependent plant growth by coordinating the polar localization of auxin efflux carrier PIN1
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	auxin	CRL4 regulates crown root formation through auxin transport in rice	In the crl4 mutant, auxin transport was impaired in shoots and roots
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	auxin	CRL4 regulates crown root formation through auxin transport in rice	These results indicate that maintaining an appropriate auxin accumulation and gradient through CRL4 in the basal portion of shoots is essential for crown root formation in rice
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	auxin	CRL4 regulates crown root formation through auxin transport in rice	CRL4 regulates crown root formation through auxin transport in rice
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	growth	CRL4 regulates crown root formation through auxin transport in rice	CRL4 encodes a protein highly homologous with Arabidopsis GNOM, which mediates auxin-dependent plant growth by coordinating the polar localization of auxin efflux carrier PIN1
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	shoot	CRL4 regulates crown root formation through auxin transport in rice	In the crl4 mutant, auxin transport was impaired in shoots and roots
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	shoot	CRL4 regulates crown root formation through auxin transport in rice	These results indicate that maintaining an appropriate auxin accumulation and gradient through CRL4 in the basal portion of shoots is essential for crown root formation in rice
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	root	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family	RT-PCR and analysis of promoter::GUS transgenic plants showed that OsGNOM1 is expressed in AR primordia, vascular tissues, LRs, root tips, leaves, anthers and lemma veins, with a distribution pattern similar to that of auxin
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	root	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	auxin	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family	RT-PCR and analysis of promoter::GUS transgenic plants showed that OsGNOM1 is expressed in AR primordia, vascular tissues, LRs, root tips, leaves, anthers and lemma veins, with a distribution pattern similar to that of auxin
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	adventitious root	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	lateral root	CRL4 regulates crown root formation through auxin transport in rice	Besides reduced crown root number, the crl4 mutant showed auxin-related abnormal phenotypical character-istics such as reduced lateral root number and impaired root gravitropism
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	root	CRL4 regulates crown root formation through auxin transport in rice	) mutant crown rootless4 (crl4) that was found to have defective crown root formation
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	root	CRL4 regulates crown root formation through auxin transport in rice	Besides reduced crown root number, the crl4 mutant showed auxin-related abnormal phenotypical character-istics such as reduced lateral root number and impaired root gravitropism
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	root	CRL4 regulates crown root formation through auxin transport in rice	In the crl4 mutant, auxin transport was impaired in shoots and roots
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	root	CRL4 regulates crown root formation through auxin transport in rice	These results indicate that maintaining an appropriate auxin accumulation and gradient through CRL4 in the basal portion of shoots is essential for crown root formation in rice
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	root	CRL4 regulates crown root formation through auxin transport in rice	CRL4 regulates crown root formation through auxin transport in rice
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	crown	CRL4 regulates crown root formation through auxin transport in rice	) mutant crown rootless4 (crl4) that was found to have defective crown root formation
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	crown	CRL4 regulates crown root formation through auxin transport in rice	Besides reduced crown root number, the crl4 mutant showed auxin-related abnormal phenotypical character-istics such as reduced lateral root number and impaired root gravitropism
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	crown	CRL4 regulates crown root formation through auxin transport in rice	These results indicate that maintaining an appropriate auxin accumulation and gradient through CRL4 in the basal portion of shoots is essential for crown root formation in rice
CRL4|OsGNOM1	Os03g0666100	LOC_Os03g46330	crown	CRL4 regulates crown root formation through auxin transport in rice	CRL4 regulates crown root formation through auxin transport in rice
Crl5	Os07g0124700	LOC_Os07g03250	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In this study, we characterized a rice mutant, termed crown rootless5 (crl5), which produced fewer crown roots and displayed impaired initiation of crown root primordia
Crl5	Os07g0124700	LOC_Os07g03250	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The expression of CRL5, which encodes a member of the large AP2/ERF transcription factor family protein, was observed in the stem region where crown root initiation occurs
Crl5	Os07g0124700	LOC_Os07g03250	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
Crl5	Os07g0124700	LOC_Os07g03250	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A crl1 crl5 double mutant displayed an additive phenotype, indicating that these two genes function in different genetic pathways for crown root initiation
Crl5	Os07g0124700	LOC_Os07g03250	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
Crl5	Os07g0124700	LOC_Os07g03250	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Transgenic plants that over-expressed OsRR1 under the control of the CRL5 promoter in a crl5 mutant background produced a higher number of crown roots than the crl5 plant
Crl5	Os07g0124700	LOC_Os07g03250	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
Crl5	Os07g0124700	LOC_Os07g03250	cytokinin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
Crl5	Os07g0124700	LOC_Os07g03250	cytokinin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
Crl5	Os07g0124700	LOC_Os07g03250	crown root	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	We have demonstrated that auxin-induced CROWN ROOTLESS5 (CRL5) regulates crown root initiation in rice through the induction of OsRR1, a negative regulator of cytokinin signaling
Crl5	Os07g0124700	LOC_Os07g03250	crown root	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	A radicle initiated normally in a crl5 mutant, in spite of the defect in crown root initiation, whereas crown roots, but not a radicle, were produced in a radicleless1 (ral1) mutant
Crl5	Os07g0124700	LOC_Os07g03250	crown	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	We have demonstrated that auxin-induced CROWN ROOTLESS5 (CRL5) regulates crown root initiation in rice through the induction of OsRR1, a negative regulator of cytokinin signaling
Crl5	Os07g0124700	LOC_Os07g03250	crown	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	A radicle initiated normally in a crl5 mutant, in spite of the defect in crown root initiation, whereas crown roots, but not a radicle, were produced in a radicleless1 (ral1) mutant
Crl5	Os07g0124700	LOC_Os07g03250	cytokinin	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	We have demonstrated that auxin-induced CROWN ROOTLESS5 (CRL5) regulates crown root initiation in rice through the induction of OsRR1, a negative regulator of cytokinin signaling
Crl5	Os07g0124700	LOC_Os07g03250	auxin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Exogenous auxin treatment induced CRL5 expression without de novo protein biosynthesis, which also required the degradation of AUX/IAA proteins
Crl5	Os07g0124700	LOC_Os07g03250	auxin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
Crl5	Os07g0124700	LOC_Os07g03250	auxin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
Crl5	Os07g0124700	LOC_Os07g03250	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In this study, we characterized a rice mutant, termed crown rootless5 (crl5), which produced fewer crown roots and displayed impaired initiation of crown root primordia
Crl5	Os07g0124700	LOC_Os07g03250	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The expression of CRL5, which encodes a member of the large AP2/ERF transcription factor family protein, was observed in the stem region where crown root initiation occurs
Crl5	Os07g0124700	LOC_Os07g03250	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
Crl5	Os07g0124700	LOC_Os07g03250	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A crl1 crl5 double mutant displayed an additive phenotype, indicating that these two genes function in different genetic pathways for crown root initiation
Crl5	Os07g0124700	LOC_Os07g03250	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
Crl5	Os07g0124700	LOC_Os07g03250	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Transgenic plants that over-expressed OsRR1 under the control of the CRL5 promoter in a crl5 mutant background produced a higher number of crown roots than the crl5 plant
Crl5	Os07g0124700	LOC_Os07g03250	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
Crl5	Os07g0124700	LOC_Os07g03250	resistant	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
Crl5	Os07g0124700	LOC_Os07g03250	auxin	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	We have demonstrated that auxin-induced CROWN ROOTLESS5 (CRL5) regulates crown root initiation in rice through the induction of OsRR1, a negative regulator of cytokinin signaling
Crl5	Os07g0124700	LOC_Os07g03250	stem	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The expression of CRL5, which encodes a member of the large AP2/ERF transcription factor family protein, was observed in the stem region where crown root initiation occurs
Crl5	Os07g0124700	LOC_Os07g03250	adventitious root	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	CRL5 overexpressing calli formed adventitious roots, although CRL5 overexpressing plants did not induce ectopic roots, suggesting that CRL5, which promotes de novo root initiation, might function only in de-differentiated cells
Crl5	Os07g0124700	LOC_Os07g03250	adventitious root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
Crl5	Os07g0124700	LOC_Os07g03250	root	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	We have demonstrated that auxin-induced CROWN ROOTLESS5 (CRL5) regulates crown root initiation in rice through the induction of OsRR1, a negative regulator of cytokinin signaling
Crl5	Os07g0124700	LOC_Os07g03250	root	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	CRL5 overexpressing calli formed adventitious roots, although CRL5 overexpressing plants did not induce ectopic roots, suggesting that CRL5, which promotes de novo root initiation, might function only in de-differentiated cells
Crl5	Os07g0124700	LOC_Os07g03250	root	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	A radicle initiated normally in a crl5 mutant, in spite of the defect in crown root initiation, whereas crown roots, but not a radicle, were produced in a radicleless1 (ral1) mutant
Crl5	Os07g0124700	LOC_Os07g03250	root	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice	A crl5 ral1 double mutant displayed an additive phenotype, showing that the formation of each root is regulated by different genetic mechanisms in rice
Crl5	Os07g0124700	LOC_Os07g03250	iaa	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Exogenous auxin treatment induced CRL5 expression without de novo protein biosynthesis, which also required the degradation of AUX/IAA proteins
Crl5	Os07g0124700	LOC_Os07g03250	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In this study, we characterized a rice mutant, termed crown rootless5 (crl5), which produced fewer crown roots and displayed impaired initiation of crown root primordia
Crl5	Os07g0124700	LOC_Os07g03250	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The expression of CRL5, which encodes a member of the large AP2/ERF transcription factor family protein, was observed in the stem region where crown root initiation occurs
Crl5	Os07g0124700	LOC_Os07g03250	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A putative auxin response element in the CRL5 promoter region specifically interacted with a rice ARF, demonstrating that CRL5 may be a direct target of an ARF, similar to CRL1/ADVENTITIOUS ROOTLESS1 (ARL1) that also regulates crown root initiation
Crl5	Os07g0124700	LOC_Os07g03250	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	A crl1 crl5 double mutant displayed an additive phenotype, indicating that these two genes function in different genetic pathways for crown root initiation
Crl5	Os07g0124700	LOC_Os07g03250	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
Crl5	Os07g0124700	LOC_Os07g03250	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Transgenic plants that over-expressed OsRR1 under the control of the CRL5 promoter in a crl5 mutant background produced a higher number of crown roots than the crl5 plant
Crl5	Os07g0124700	LOC_Os07g03250	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
Crl5	Os07g0124700	LOC_Os07g03250	transcription factor	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The expression of CRL5, which encodes a member of the large AP2/ERF transcription factor family protein, was observed in the stem region where crown root initiation occurs
CRR1	Os03g0119500	None	vascular bundle	CRR1 encoding callose synthase functions in ovary expansion by affecting vascular cell patterning in rice.	Analysis of pCRR1::GUS transgenic plants showed that CRR1 was specifically expressed in vascular bundle cells
CRR1	Os03g0119500	None	vascular bundle	CRR1 encoding callose synthase functions in ovary expansion by affecting vascular cell patterning in rice.	Furthermore, a small portion of cells in the vascular bundles of crr1 showed defective cell wall formation, and callose deposition was specifically reduced at the plasmodesmata (PD) of cells with aberrant walls
CRR1	Os03g0119500	None	map-based cloning	CRR1 encoding callose synthase functions in ovary expansion by affecting vascular cell patterning in rice.	Map-based cloning revealed that CRR1 encodes a protein homologous to Arabidopsis callose synthases AtGSL8 and AtGSL10
CRR1	Os03g0119500	None	cell wall	CRR1 encoding callose synthase functions in ovary expansion by affecting vascular cell patterning in rice.	Furthermore, a small portion of cells in the vascular bundles of crr1 showed defective cell wall formation, and callose deposition was specifically reduced at the plasmodesmata (PD) of cells with aberrant walls
CRR6	Os08g0167500	LOC_Os08g07060	growth	Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice	The role of NAD(P)H dehydrogenase (NDH)-dependent cyclic electron flow around photosystem I in photosynthetic regulation and plant growth at several temperatures was examined in rice (Oryza sativa) that is defective in CHLORORESPIRATORY REDUCTION 6 (CRR6), which is required for accumulation of sub-complex A of the chloroplast NDH complex (crr6)
CRR6	Os08g0167500	LOC_Os08g07060	photosynthesis	Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice	However, when plants were grown at 20 degrees C, all the examined photosynthetic parameters were significantly lower in crr6 mutants than control plants, and this effect on photosynthesis caused a corresponding reduction in plant biomass
CRR6	Os08g0167500	LOC_Os08g07060	chloroplast	Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice	The role of NAD(P)H dehydrogenase (NDH)-dependent cyclic electron flow around photosystem I in photosynthetic regulation and plant growth at several temperatures was examined in rice (Oryza sativa) that is defective in CHLORORESPIRATORY REDUCTION 6 (CRR6), which is required for accumulation of sub-complex A of the chloroplast NDH complex (crr6)
CRR6	Os08g0167500	LOC_Os08g07060	biomass	Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice	However, when plants were grown at 20 degrees C, all the examined photosynthetic parameters were significantly lower in crr6 mutants than control plants, and this effect on photosynthesis caused a corresponding reduction in plant biomass
CRR6	Os08g0167500	LOC_Os08g07060	temperature	Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice	The role of NAD(P)H dehydrogenase (NDH)-dependent cyclic electron flow around photosystem I in photosynthetic regulation and plant growth at several temperatures was examined in rice (Oryza sativa) that is defective in CHLORORESPIRATORY REDUCTION 6 (CRR6), which is required for accumulation of sub-complex A of the chloroplast NDH complex (crr6)
CRR6	Os08g0167500	LOC_Os08g07060	temperature	Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice	However, after long-term acclimation to the low temperature, impairment of cyclic electron flow suppressed non-photochemical quenching and promoted reduction of the plastoquinone pool in crr6 mutants
CRTintP	Os07g0498800	LOC_Os07g31540	cold stress	A novel interaction between calreticulin and ubiquitin-like nuclear protein in rice	Northern and immunoblot analysis showed increased expression of CRT and CRTintP in response to cold stress
CRTintP	Os07g0498800	LOC_Os07g31540	leaf	A novel interaction between calreticulin and ubiquitin-like nuclear protein in rice	Co-immunoprecipitation using anti-CRT antibodies confirmed the existence of the CRT-CRTintP complex in vivo in the stressed leaf tissue, suggesting their potential role in regulating stress response
CS3	Os03g0331600	LOC_Os03g21370	leaf	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	DAB staining and H2O2 content measurement showed that there was excessive H2O2 accumulation in the cs3 mutant leaf
CS3	Os03g0331600	LOC_Os03g21370	leaf	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	Accompanying the chlorophyll deficiency, the chloroplasts in cs3 leaf cells were abnormal
CS3	Os03g0331600	LOC_Os03g21370	seedlings	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	The cs3 mutant seedlings exhibit a yellowish phenotype at germination, and they do not survive at the seedling stage
CS3	Os03g0331600	LOC_Os03g21370	chloroplast	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	CS3 is mainly expressed in green tissues and the S136 F would influence CS3 interacting with YGL8 and its chloroplast localization
CS3	Os03g0331600	LOC_Os03g21370	chloroplast	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	qRT-PCR analysis revealed the changes in the expression of genes involved in chlorophyll biosynthesis and degradation, chloroplast development, senescence, and photosynthesis in the cs3 mutant
CS3	Os03g0331600	LOC_Os03g21370	seedling	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	In this study, we isolated and characterized a chlorophyll-deficient mutant, which we named cs3 (chlorotic seedling 3)
CS3	Os03g0331600	LOC_Os03g21370	seedling	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	The cs3 mutant seedlings exhibit a yellowish phenotype at germination, and they do not survive at the seedling stage
CS3	Os03g0331600	LOC_Os03g21370	map-based cloning	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	Using a map-based cloning strategy, we mapped the CS3 gene, which encodes a Ycf54 domain-containing protein, to a locus on chromosome 3
CS3	Os03g0331600	LOC_Os03g21370	photosynthesis	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	qRT-PCR analysis revealed the changes in the expression of genes involved in chlorophyll biosynthesis and degradation, chloroplast development, senescence, and photosynthesis in the cs3 mutant
CS3	Os03g0331600	LOC_Os03g21370	chloroplast development	CS3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	qRT-PCR analysis revealed the changes in the expression of genes involved in chlorophyll biosynthesis and degradation, chloroplast development, senescence, and photosynthesis in the cs3 mutant
CSA	Os01g0274800	LOC_Os01g16810	reproductive	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	Our findings suggest that CSA is a key transcriptional regulator for sugar partitioning in rice during male reproductive development
CSA	Os01g0274800	LOC_Os01g16810	transcription regulator	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production	Here, we describe a photoperiod-controlled male sterile line, carbon starved anther (csa), which contains a mutation in an R2R3 MYB transcription regulator of pollen development
CSA	Os01g0274800	LOC_Os01g16810	starch	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	We have isolated and characterized a rice (Oryza sativa) mutant, carbon starved anther (csa), that showed increased sugar contents in leaves and stems and reduced levels of sugars and starch in floral organs
CSA	Os01g0274800	LOC_Os01g16810	sterile	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production	Here, we describe a photoperiod-controlled male sterile line, carbon starved anther (csa), which contains a mutation in an R2R3 MYB transcription regulator of pollen development
CSA	Os01g0274800	LOC_Os01g16810	sterile	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production	The csa-based photoperiod-sensitive male sterile line allows the establishment of a stable two-line hybrid system, which promises to have a significant impact on agriculture
CSA	Os01g0274800	LOC_Os01g16810	sterile	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production
CSA	Os01g0274800	LOC_Os01g16810	tapetal	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	CSA was isolated by map-based cloning and was shown to encode an R2R3 MYB transcription factor that was expressed preferentially in the anther tapetal cells and in the sugar-transporting vascular tissues
CSA	Os01g0274800	LOC_Os01g16810	seed	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production
CSA	Os01g0274800	LOC_Os01g16810	sterile	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	In particular, the csa mutant had reduced levels of carbohydrates in later anthers and was male sterile
CSA	Os01g0274800	LOC_Os01g16810	stem	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	We have isolated and characterized a rice (Oryza sativa) mutant, carbon starved anther (csa), that showed increased sugar contents in leaves and stems and reduced levels of sugars and starch in floral organs
CSA	Os01g0274800	LOC_Os01g16810	transporter	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	In addition, the expression of MST8, encoding a monosaccharide transporter, was greatly reduced in csa anthers
CSA	Os01g0274800	LOC_Os01g16810	floral	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	We have isolated and characterized a rice (Oryza sativa) mutant, carbon starved anther (csa), that showed increased sugar contents in leaves and stems and reduced levels of sugars and starch in floral organs
CSA	Os01g0274800	LOC_Os01g16810	transcription factor	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	CSA was isolated by map-based cloning and was shown to encode an R2R3 MYB transcription factor that was expressed preferentially in the anther tapetal cells and in the sugar-transporting vascular tissues
CSA	Os01g0274800	LOC_Os01g16810	anther	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production	Here, we describe a photoperiod-controlled male sterile line, carbon starved anther (csa), which contains a mutation in an R2R3 MYB transcription regulator of pollen development
CSA	Os01g0274800	LOC_Os01g16810	heterosis	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production	Furthermore, F(1) plants of csa and a restorer line JP69 exhibited heterosis (hybrid vigor), suggesting the feasibility of using this mutation to create hybrid rice
CSA	Os01g0274800	LOC_Os01g16810	anther	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	We have isolated and characterized a rice (Oryza sativa) mutant, carbon starved anther (csa), that showed increased sugar contents in leaves and stems and reduced levels of sugars and starch in floral organs
CSA	Os01g0274800	LOC_Os01g16810	anther	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	In particular, the csa mutant had reduced levels of carbohydrates in later anthers and was male sterile
CSA	Os01g0274800	LOC_Os01g16810	anther	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	The csa mutant had reduced accumulation of (14)C-labeled sugars in anther sink tissue
CSA	Os01g0274800	LOC_Os01g16810	anther	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	CSA was isolated by map-based cloning and was shown to encode an R2R3 MYB transcription factor that was expressed preferentially in the anther tapetal cells and in the sugar-transporting vascular tissues
CSA	Os01g0274800	LOC_Os01g16810	anther	Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development	In addition, the expression of MST8, encoding a monosaccharide transporter, was greatly reduced in csa anthers
CSA	Os01g0274800	LOC_Os01g16810	pollen	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production	Here, we describe a photoperiod-controlled male sterile line, carbon starved anther (csa), which contains a mutation in an R2R3 MYB transcription regulator of pollen development
CSA	Os01g0274800	LOC_Os01g16810	pollen	Brassinosteroids Promote Development of Rice Pollen Grains and Seeds by Triggering Expression of CSA, a MYB Domain Protein.	Mechanically, OsBZR1 directly promotes CSA expression and CSA directly triggers expression of sugar partitioning and metabolic genes during pollen and seed development
CSA	Os01g0274800	LOC_Os01g16810	seed	Brassinosteroids Promote Development of Rice Pollen Grains and Seeds by Triggering Expression of CSA, a MYB Domain Protein.	Mechanically, OsBZR1 directly promotes CSA expression and CSA directly triggers expression of sugar partitioning and metabolic genes during pollen and seed development
CSA	Os01g0274800	LOC_Os01g16810	development	Brassinosteroids Promote Development of Rice Pollen Grains and Seeds by Triggering Expression of CSA, a MYB Domain Protein.	Mechanically, OsBZR1 directly promotes CSA expression and CSA directly triggers expression of sugar partitioning and metabolic genes during pollen and seed development
CSA	Os01g0274800	LOC_Os01g16810	seed development	Brassinosteroids Promote Development of Rice Pollen Grains and Seeds by Triggering Expression of CSA, a MYB Domain Protein.	Mechanically, OsBZR1 directly promotes CSA expression and CSA directly triggers expression of sugar partitioning and metabolic genes during pollen and seed development
CSA	Os01g0274800	LOC_Os01g16810	sugar	Brassinosteroids Promote Development of Rice Pollen Grains and Seeds by Triggering Expression of CSA, a MYB Domain Protein.	Mechanically, OsBZR1 directly promotes CSA expression and CSA directly triggers expression of sugar partitioning and metabolic genes during pollen and seed development
CSA	Os01g0274800	LOC_Os01g16810	development	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 Several hub genes coordinating the effects of CSA regulation were identified as critical elements determining WT male fertility and further analysis of these and related genes will reveal insights into how CSA coordinates sugar metabolism, cell wall biosynthesis, and photoperiod sensing in rice anther development
CSA	Os01g0274800	LOC_Os01g16810	fertility	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 CSA played a critical role in regulating sugar metabolism and cell wall synthesis in anthers under short-day conditions, and transcription of key genes inducing csa-directed sterility was upregulated under long-day (LD) conditions though not to WT levels, revealing a mechanism to explain the partial restoration of fertility in rice under LD conditions
CSA	Os01g0274800	LOC_Os01g16810	fertility	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 Several hub genes coordinating the effects of CSA regulation were identified as critical elements determining WT male fertility and further analysis of these and related genes will reveal insights into how CSA coordinates sugar metabolism, cell wall biosynthesis, and photoperiod sensing in rice anther development
CSA	Os01g0274800	LOC_Os01g16810	anther	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 Several hub genes coordinating the effects of CSA regulation were identified as critical elements determining WT male fertility and further analysis of these and related genes will reveal insights into how CSA coordinates sugar metabolism, cell wall biosynthesis, and photoperiod sensing in rice anther development
CSA	Os01g0274800	LOC_Os01g16810	sterility	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 CSA played a critical role in regulating sugar metabolism and cell wall synthesis in anthers under short-day conditions, and transcription of key genes inducing csa-directed sterility was upregulated under long-day (LD) conditions though not to WT levels, revealing a mechanism to explain the partial restoration of fertility in rice under LD conditions
CSA	Os01g0274800	LOC_Os01g16810	reproductive	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 Eight direct targets of CSA regulation were identified, all of which were genes involved in sugar metabolism and transport (cell wall invertases, SWEETs, and monosaccharide transporters) expressed only in reproductive tissues
CSA	Os01g0274800	LOC_Os01g16810	cell wall	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 CSA played a critical role in regulating sugar metabolism and cell wall synthesis in anthers under short-day conditions, and transcription of key genes inducing csa-directed sterility was upregulated under long-day (LD) conditions though not to WT levels, revealing a mechanism to explain the partial restoration of fertility in rice under LD conditions
CSA	Os01g0274800	LOC_Os01g16810	cell wall	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 Eight direct targets of CSA regulation were identified, all of which were genes involved in sugar metabolism and transport (cell wall invertases, SWEETs, and monosaccharide transporters) expressed only in reproductive tissues
CSA	Os01g0274800	LOC_Os01g16810	cell wall	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 Several hub genes coordinating the effects of CSA regulation were identified as critical elements determining WT male fertility and further analysis of these and related genes will reveal insights into how CSA coordinates sugar metabolism, cell wall biosynthesis, and photoperiod sensing in rice anther development
CSA	Os01g0274800	LOC_Os01g16810	sugar	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 CSA played a critical role in regulating sugar metabolism and cell wall synthesis in anthers under short-day conditions, and transcription of key genes inducing csa-directed sterility was upregulated under long-day (LD) conditions though not to WT levels, revealing a mechanism to explain the partial restoration of fertility in rice under LD conditions
CSA	Os01g0274800	LOC_Os01g16810	sugar	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 Eight direct targets of CSA regulation were identified, all of which were genes involved in sugar metabolism and transport (cell wall invertases, SWEETs, and monosaccharide transporters) expressed only in reproductive tissues
CSA	Os01g0274800	LOC_Os01g16810	sugar	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 Several hub genes coordinating the effects of CSA regulation were identified as critical elements determining WT male fertility and further analysis of these and related genes will reveal insights into how CSA coordinates sugar metabolism, cell wall biosynthesis, and photoperiod sensing in rice anther development
CSA	Os01g0274800	LOC_Os01g16810	anther development	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 Several hub genes coordinating the effects of CSA regulation were identified as critical elements determining WT male fertility and further analysis of these and related genes will reveal insights into how CSA coordinates sugar metabolism, cell wall biosynthesis, and photoperiod sensing in rice anther development
CSA	Os01g0274800	LOC_Os01g16810	cell wall synthesis	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	 CSA played a critical role in regulating sugar metabolism and cell wall synthesis in anthers under short-day conditions, and transcription of key genes inducing csa-directed sterility was upregulated under long-day (LD) conditions though not to WT levels, revealing a mechanism to explain the partial restoration of fertility in rice under LD conditions
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	stem	Loss of Cellulose synthase-like F6 function affects mixed-linkage glucan deposition, cell wall mechanical properties, and defense responses in vegetative tissues of rice	Rice cslf6 knockout mutants show a slight decrease in height and stem diameter but otherwise grew normally during vegetative development
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	height	Loss of Cellulose synthase-like F6 function affects mixed-linkage glucan deposition, cell wall mechanical properties, and defense responses in vegetative tissues of rice	Rice cslf6 knockout mutants show a slight decrease in height and stem diameter but otherwise grew normally during vegetative development
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	vegetative	Loss of Cellulose synthase-like F6 function affects mixed-linkage glucan deposition, cell wall mechanical properties, and defense responses in vegetative tissues of rice	Rice cslf6 knockout mutants show a slight decrease in height and stem diameter but otherwise grew normally during vegetative development
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	cell wall	Cell wall properties in Oryza sativa influence mesophyll CO2 conductance.	 The data presented here indicate that the loss of MLG in CslF6 plants had an impact on gm and demonstrate the importance of cell wall effective porosity and liquid path length on gm 
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	transcription factor	Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.	 OsMYC2, a master transcription factor of jasmonate signalling, directly controlled the upregulation of OsCslF6 in response to BPH feeding
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	vascular bundle	Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.	 Overexpressing OsCslF6, which encodes a glucan synthase that catalyses MLG biosynthesis, significantly enhanced BPH resistance and cell wall thickness in vascular bundles, whereas knockout of OsCslF6 reduced BPH resistance and vascular wall thickness
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	resistance	Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.	 Overexpressing OsCslF6, which encodes a glucan synthase that catalyses MLG biosynthesis, significantly enhanced BPH resistance and cell wall thickness in vascular bundles, whereas knockout of OsCslF6 reduced BPH resistance and vascular wall thickness
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	resistance	Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.	 The AT-rich domain of the OsCslF6 promoter varies in rice varieties from different locations and natural variants in this domain were associated with BPH resistance
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	jasmonate	Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.	 OsMYC2, a master transcription factor of jasmonate signalling, directly controlled the upregulation of OsCslF6 in response to BPH feeding
CslF6|OsCslF6	Os08g0160500	LOC_Os08g06380	cell wall	Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.	 Overexpressing OsCslF6, which encodes a glucan synthase that catalyses MLG biosynthesis, significantly enhanced BPH resistance and cell wall thickness in vascular bundles, whereas knockout of OsCslF6 reduced BPH resistance and vascular wall thickness
CSN6	Os08g0500000	LOC_Os08g39070	stress	CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.	Collectively, the cellular CSN6 level is decreased during early stages of -Fe to ensure the rapid accumulation of IDEF1, which in turn up-regulates several iron uptake/utilisation-related genes to help overcome -Fe stress in rice
CSN6	Os08g0500000	LOC_Os08g39070	iron	CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.	Thus, we constructed CSN6 transgenic sense and antisense lines and found that experimental depletion of CSN6 results in accumulation of the IDEF1 protein and up-regulation of several iron uptake/utilisation-related genes
CSN6	Os08g0500000	LOC_Os08g39070	iron	CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.	Collectively, the cellular CSN6 level is decreased during early stages of -Fe to ensure the rapid accumulation of IDEF1, which in turn up-regulates several iron uptake/utilisation-related genes to help overcome -Fe stress in rice
CSP41b|LGL1	Os12g0420200	LOC_Os12g23180	leaf	Newly identified CSP41b gene localized in chloroplasts affects leaf color in rice	Newly identified CSP41b gene localized in chloroplasts affects leaf color in rice
CSP41b|LGL1	Os12g0420200	LOC_Os12g23180	leaf	Newly identified CSP41b gene localized in chloroplasts affects leaf color in rice	Our results demonstrate that CSP41b is a novel gene required for normal leaf color and chloroplast morphology in rice
CSP41b|LGL1	Os12g0420200	LOC_Os12g23180	chloroplast	Newly identified CSP41b gene localized in chloroplasts affects leaf color in rice	Our results demonstrate that CSP41b is a novel gene required for normal leaf color and chloroplast morphology in rice
Ctb1	Os04g0619300	LOC_Os04g52830	cold tolerance	Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice	We previously identified two closely linked quantitative trait loci, Ctb1 and Ctb2, for cold tolerance at the booting stage of Norin-PL8 in the long arm of chromosome 4
Ctb1	Os04g0619300	LOC_Os04g52830	cold tolerance	Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice	A comparison of the degrees of cold tolerance of the NILs indicated that Ctb1 is located in the 56-kb region covered by a bacterial artificial chromosome clone, OSJNBa0058 K23, that had been sequenced by the International Rice Genome Sequence Project
Ctb1	Os04g0619300	LOC_Os04g52830	cold tolerance	Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice	We were also able to show that Ctb1 is likely to be associated with anther length, which is one of major factors in cold tolerance at the booting stage
Ctb1	Os04g0619300	LOC_Os04g52830	cold tolerance	Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice	Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice
Ctb1	Os04g0619300	LOC_Os04g52830	anther	Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice	We were also able to show that Ctb1 is likely to be associated with anther length, which is one of major factors in cold tolerance at the booting stage
Ctb1	Os04g0619300	LOC_Os04g52830	cold tolerance	Map-based cloning of the rice cold tolerance gene Ctb1	We previously mapped a quantitative trait locus for cold tolerance, Ctb1, to a 56-kb region containing 7 putative genes
Ctb1	Os04g0619300	LOC_Os04g52830	cold tolerance	Map-based cloning of the rice cold tolerance gene Ctb1	Map-based cloning of the rice cold tolerance gene Ctb1
CTB4a	Os04g0132500	LOC_Os04g04330	temperature	Natural variation in CTB4a enhances rice adaptation to cold habitats.	We show that different CTB4a alleles confer distinct levels of cold tolerance and selection for variation in the CTB4a promoter region has occurred on the basis of environmental temperature
CTB4a	Os04g0132500	LOC_Os04g04330	seed	Natural variation in CTB4a enhances rice adaptation to cold habitats.	Upregulation of CTB4a correlates with increased ATP synthase activity, ATP content, enhanced seed setting and improved yield under cold stress conditions
CTB4a	Os04g0132500	LOC_Os04g04330	tolerance	Natural variation in CTB4a enhances rice adaptation to cold habitats.	Here we explored a QTL for cold tolerance and cloned the gene, CTB4a (cold tolerance at booting stage), encoding a conserved leucine-rich repeat receptor-like kinase
CTB4a	Os04g0132500	LOC_Os04g04330	tolerance	Natural variation in CTB4a enhances rice adaptation to cold habitats.	We show that different CTB4a alleles confer distinct levels of cold tolerance and selection for variation in the CTB4a promoter region has occurred on the basis of environmental temperature
CTB4a	Os04g0132500	LOC_Os04g04330	yield	Natural variation in CTB4a enhances rice adaptation to cold habitats.	Upregulation of CTB4a correlates with increased ATP synthase activity, ATP content, enhanced seed setting and improved yield under cold stress conditions
CTB4a	Os04g0132500	LOC_Os04g04330	cold tolerance	Natural variation in CTB4a enhances rice adaptation to cold habitats.	Here we explored a QTL for cold tolerance and cloned the gene, CTB4a (cold tolerance at booting stage), encoding a conserved leucine-rich repeat receptor-like kinase
CTB4a	Os04g0132500	LOC_Os04g04330	cold tolerance	Natural variation in CTB4a enhances rice adaptation to cold habitats.	We show that different CTB4a alleles confer distinct levels of cold tolerance and selection for variation in the CTB4a promoter region has occurred on the basis of environmental temperature
CTB4a	Os04g0132500	LOC_Os04g04330	cold stress	Natural variation in CTB4a enhances rice adaptation to cold habitats.	Upregulation of CTB4a correlates with increased ATP synthase activity, ATP content, enhanced seed setting and improved yield under cold stress conditions
CTB4a	Os04g0132500	LOC_Os04g04330	stress	Natural variation in CTB4a enhances rice adaptation to cold habitats.	Upregulation of CTB4a correlates with increased ATP synthase activity, ATP content, enhanced seed setting and improved yield under cold stress conditions
CTB4a	Os04g0132500	LOC_Os04g04330	Kinase	Natural variation in CTB4a enhances rice adaptation to cold habitats.	Here we explored a QTL for cold tolerance and cloned the gene, CTB4a (cold tolerance at booting stage), encoding a conserved leucine-rich repeat receptor-like kinase
CTMyb1|OsTRFL1	Os02g0776700	LOC_Os02g53670	development	Telomere association of Oryza sativa telomere repeat-binding factor like 1 and its roles in telomere maintenance and development in rice, Oryza sativa L	These results suggest that OsTRFL1 is an essential factor for the proper maintenance of telomeres and normal development of rice
CTMyb1|OsTRFL1	Os02g0776700	LOC_Os02g53670	vegetative	Telomere association of Oryza sativa telomere repeat-binding factor like 1 and its roles in telomere maintenance and development in rice, Oryza sativa L	The reduced levels of OsTRFL1 caused serious developmental defects in both vegetative and reproductive organs of rice plants
CTMyb1|OsTRFL1	Os02g0776700	LOC_Os02g53670	reproductive	Telomere association of Oryza sativa telomere repeat-binding factor like 1 and its roles in telomere maintenance and development in rice, Oryza sativa L	The reduced levels of OsTRFL1 caused serious developmental defects in both vegetative and reproductive organs of rice plants
CTMyb1|OsTRFL1	Os02g0776700	LOC_Os02g53670	telomere lengthening	Telomere association of Oryza sativa telomere repeat-binding factor like 1 and its roles in telomere maintenance and development in rice, Oryza sativa L	T-DNA inserted OsTRFL1 knock-out mutant rice plants displayed significantly longer telomeres (6-25 kb) than those (5-12 kb) in wild-type plants, indicating that OsTRFL1 is a negative factor for telomere lengthening
CTMyb1|OsTRFL1	Os02g0776700	LOC_Os02g53670	telomere repeat-binding factor	Telomere association of Oryza sativa telomere repeat-binding factor like 1 and its roles in telomere maintenance and development in rice, Oryza sativa L	In this study, we identified and characterized OsTRFL1 (Oryza sativa Telomere Repeat-binding Factor Like 1) in rice, a monocot model crop
CUR1	Os07g0563700	LOC_Os07g37640	leaf	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	The cur1 mutant displayed a heteroblastic change, whereby the mutant leaf phenotype appeared specifically at a later adult phase of vegetative development
CUR1	Os07g0563700	LOC_Os07g37640	leaf	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	The shoot apical meristem (SAM) was small and the leaf initiation rate was low, suggesting that the activity of the SAM seemed to be partially reduced in cur1
CUR1	Os07g0563700	LOC_Os07g37640	shoot	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	The shoot apical meristem (SAM) was small and the leaf initiation rate was low, suggesting that the activity of the SAM seemed to be partially reduced in cur1
CUR1	Os07g0563700	LOC_Os07g37640	shoot	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	Transcriptome analysis showed that genes involved in protein quality control were highly upregulated in the cur1 shoot apex at the later vegetative phase, suggesting the restoration of impaired proteins probably produced by partial defects in translational control due to the loss of function of Elongator
CUR1	Os07g0563700	LOC_Os07g37640	development	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	The cur1 mutant displayed a heteroblastic change, whereby the mutant leaf phenotype appeared specifically at a later adult phase of vegetative development
CUR1	Os07g0563700	LOC_Os07g37640	development	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	The differences in the mutant phenotype and gene expression profile between CUR1 and its Arabidopsis ortholog suggest that Elongator has evolved to play a unique role in rice development
CUR1	Os07g0563700	LOC_Os07g37640	vegetative	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	The cur1 mutant displayed a heteroblastic change, whereby the mutant leaf phenotype appeared specifically at a later adult phase of vegetative development
CUR1	Os07g0563700	LOC_Os07g37640	vegetative	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	Transcriptome analysis showed that genes involved in protein quality control were highly upregulated in the cur1 shoot apex at the later vegetative phase, suggesting the restoration of impaired proteins probably produced by partial defects in translational control due to the loss of function of Elongator
CUR1	Os07g0563700	LOC_Os07g37640	meristem	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	The shoot apical meristem (SAM) was small and the leaf initiation rate was low, suggesting that the activity of the SAM seemed to be partially reduced in cur1
CUR1	Os07g0563700	LOC_Os07g37640	shoot apical meristem	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	The shoot apical meristem (SAM) was small and the leaf initiation rate was low, suggesting that the activity of the SAM seemed to be partially reduced in cur1
CUR1	Os07g0563700	LOC_Os07g37640	quality	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice	Transcriptome analysis showed that genes involved in protein quality control were highly upregulated in the cur1 shoot apex at the later vegetative phase, suggesting the restoration of impaired proteins probably produced by partial defects in translational control due to the loss of function of Elongator
CycB1;1|OsCycB1;1	Os01g0805600	LOC_Os01g59120	cold stress	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	Furthermore, resistance to cold stress in the transgenic plants overexpressing OsCycB1;1 was also enhanced
CycB1;1|OsCycB1;1	Os01g0805600	LOC_Os01g59120	mitosis	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	We show that OsMYB3R-2 specifically bound to a mitosis-specific activator cis-element, (T/C)C(T/C)AACGG(T/C)(T/C)A, a conserved sequence that was found in promoters of cyclin genes such as OsCycB1;1 and OsKNOLLE2
CycB1;1|OsCycB1;1	Os01g0805600	LOC_Os01g59120	chilling	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	These results suggest that OsMYB3R-2 targets OsCycB1;1 and regulates the progress of the cell cycle during chilling stress
CycB1;1|OsCycB1;1	Os01g0805600	LOC_Os01g59120	cell cycle	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	These results suggest that OsMYB3R-2 targets OsCycB1;1 and regulates the progress of the cell cycle during chilling stress
CycB1;1|OsCycB1;1	Os01g0805600	LOC_Os01g59120	endosperm	The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice	Expression analysis showed that Orysa;CycB1;1 transcripts were localized in the endosperm and embryo
CycB1;1|OsCycB1;1	Os01g0805600	LOC_Os01g59120	endosperm	The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice	The results of the knockdown of Orysa;CycB1;1 via an endosperm or an embryo-specific promoter also suggest that the enlarged embryo may be correlated to the abortive endosperm
CycB1;1|OsCycB1;1	Os01g0805600	LOC_Os01g59120	endosperm	The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice	Our results suggest that Orysa;CycB1;1 expression is critical for endosperm formation via the regulation of mitotic division, and that the endosperm plays an important role in maintenance of embryo development in rice
CycB1;1|OsCycB1;1	Os01g0805600	LOC_Os01g59120	endosperm	The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice	The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice
CycB1;1|OsCycB1;1	Os01g0805600	LOC_Os01g59120	seed	The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice	In our current study, we show that the knockdown of Orysa;CycB1;1 in rice results in the production of abnormal seeds, which at maturity contain only an enlarged embryo
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	grain size	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	Our findings suggest a new mechanism for the regulation of grain size and yield that is driven through a novel phosphatase-mediated process that affects the phosphorylation of Cyclin-T1;3 during cell cycle progression, and thus provide new insight into the mechanisms underlying crop seed development
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	grain size	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	seed	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	Our findings suggest a new mechanism for the regulation of grain size and yield that is driven through a novel phosphatase-mediated process that affects the phosphorylation of Cyclin-T1;3 during cell cycle progression, and thus provide new insight into the mechanisms underlying crop seed development
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	seed development	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	Our findings suggest a new mechanism for the regulation of grain size and yield that is driven through a novel phosphatase-mediated process that affects the phosphorylation of Cyclin-T1;3 during cell cycle progression, and thus provide new insight into the mechanisms underlying crop seed development
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	cell cycle	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	The downregulation of Cyclin-T1;3 in rice resulted in a shorter grain, which indicates a novel function for Cyclin-T in cell cycle regulation
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	cell cycle	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	Our findings suggest a new mechanism for the regulation of grain size and yield that is driven through a novel phosphatase-mediated process that affects the phosphorylation of Cyclin-T1;3 during cell cycle progression, and thus provide new insight into the mechanisms underlying crop seed development
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	grain	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	The downregulation of Cyclin-T1;3 in rice resulted in a shorter grain, which indicates a novel function for Cyclin-T in cell cycle regulation
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	grain	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	Our findings suggest a new mechanism for the regulation of grain size and yield that is driven through a novel phosphatase-mediated process that affects the phosphorylation of Cyclin-T1;3 during cell cycle progression, and thus provide new insight into the mechanisms underlying crop seed development
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	grain	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	yield	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	Our findings suggest a new mechanism for the regulation of grain size and yield that is driven through a novel phosphatase-mediated process that affects the phosphorylation of Cyclin-T1;3 during cell cycle progression, and thus provide new insight into the mechanisms underlying crop seed development
Cyclin-T1;3	Os11g0157100	LOC_Os11g05850	yield	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3
CYCLOPS|OsIPD3|OsCYCLOPS	Os06g0115600	LOC_Os06g02520	mycorrhizal symbiosis	OsIPD3, an ortholog of the Medicago truncatula DMI3 interacting protein IPD3, is required for mycorrhizal symbiosis in rice.	OsIPD3, an ortholog of the Medicago truncatula DMI3 interacting protein IPD3, is required for mycorrhizal symbiosis in rice.
CYCLOPS|OsIPD3|OsCYCLOPS	Os06g0115600	LOC_Os06g02520	mycorrhizal symbiosis	OsIPD3, an ortholog of the Medicago truncatula DMI3 interacting protein IPD3, is required for mycorrhizal symbiosis in rice.	Osipd3 mutants are unable to form mycorrhizal symbiosis
CYCU4;1|OsCYCP4;1	Os10g0563900	LOC_Os10g41430	leaf erectness	Brassinosteroid Signaling Regulates Leaf Erectness in Oryza sativa via the Control of a Specific U-Type Cyclin and Cell Proliferation	Genetic and biochemical studies demonstrated that CYC U4;1 plays a positive role  in promoting leaf erectness by controlling the abaxial sclerenchyma cell proliferation.
CYCU4;1|OsCYCP4;1	Os10g0563900	LOC_Os10g41430	cell proliferation	Brassinosteroid Signaling Regulates Leaf Erectness in Oryza sativa via the Control of a Specific U-Type Cyclin and Cell Proliferation	Genetic and biochemical studies demonstrated that CYC U4;1 plays a positive role  in promoting leaf erectness by controlling the abaxial sclerenchyma cell proliferation.
CYCU4;1|OsCYCP4;1	Os10g0563900	LOC_Os10g41430	Brassinosteroid Signaling	Brassinosteroid Signaling Regulates Leaf Erectness in Oryza sativa via the Control of a Specific U-Type Cyclin and Cell Proliferation	Brassinosteroid Signaling Regulates Leaf Erectness in Oryza sativa via the Control of a Specific U-Type Cyclin and Cell Proliferation
CYCU4;1|OsCYCP4;1	Os10g0563900	LOC_Os10g41430	Brassinosteroid	Brassinosteroid Signaling Regulates Leaf Erectness in Oryza sativa via the Control of a Specific U-Type Cyclin and Cell Proliferation	Brassinosteroid Signaling Regulates Leaf Erectness in Oryza sativa via the Control of a Specific U-Type Cyclin and Cell Proliferation
CYCU4;1|OsCYCP4;1	Os10g0563900	LOC_Os10g41430	BR signaling	Brassinosteroid Signaling Regulates Leaf Erectness in Oryza sativa via the Control of a Specific U-Type Cyclin and Cell Proliferation	Furthermore, BR signaling inhibits the abaxial sclerenchyma cell division by coordinately regulating CYC U4;1 expression through BES1 and CYC U4;1 protein activity through GSK3 kinases.
CYP703A3	Os08g0131100	LOC_Os08g03682	ga	Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB	Together, these results suggest that GA regulates exine formation and the PCD of tapetal cells and that direct activation of CYP703A3 by GAMYB is key to exine formation
CYP703A3	Os08g0131100	LOC_Os08g03682	tapetal	Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB	Together, these results suggest that GA regulates exine formation and the PCD of tapetal cells and that direct activation of CYP703A3 by GAMYB is key to exine formation
CYP703A3	Os08g0131100	LOC_Os08g03682	pollen	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.
CYP703A3	Os08g0131100	LOC_Os08g03682	pollen	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Collectively, our results further elaborated CYP703A3 plays vital role in anther cuticle and pollen exine development in rice (Oryza sativa L
CYP703A3	Os08g0131100	LOC_Os08g03682	anther	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.
CYP703A3	Os08g0131100	LOC_Os08g03682	anther	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Collectively, our results further elaborated CYP703A3 plays vital role in anther cuticle and pollen exine development in rice (Oryza sativa L
CYP703A3	Os08g0131100	LOC_Os08g03682	sterility	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Sequence analysis detected three bases (GAA) deletion in the first exon of LOC_Os08g03682, annotated as CYP703A3 with homologous sequences related to male sterility in Arabidopsis, causing the Asparagine deletion in the mutant site
CYP703A3	Os08g0131100	LOC_Os08g03682	development	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Collectively, our results further elaborated CYP703A3 plays vital role in anther cuticle and pollen exine development in rice (Oryza sativa L
CYP703A3	Os08g0131100	LOC_Os08g03682	cuticle	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.
CYP703A3	Os08g0131100	LOC_Os08g03682	cuticle	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Collectively, our results further elaborated CYP703A3 plays vital role in anther cuticle and pollen exine development in rice (Oryza sativa L
CYP703A3	Os08g0131100	LOC_Os08g03682	microspore	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Results of qPCR suggested CYP703A3 mainly expressed in anthers with greatest abundance at microspore stage, and genes involved in sporopollenin precursors formation and transportation, such as GAMYB, TDR, CYP704B2, DPW2, OsABCG26 and OsABCG15, were significantly reduced in cyp703a3-3
CYP703A3	Os08g0131100	LOC_Os08g03682	male sterility	Identification of cyp703a3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Sequence analysis detected three bases (GAA) deletion in the first exon of LOC_Os08g03682, annotated as CYP703A3 with homologous sequences related to male sterility in Arabidopsis, causing the Asparagine deletion in the mutant site
CYP704B2	Os03g0168600	LOC_Os03g07250	cuticle	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
CYP704B2	Os03g0168600	LOC_Os03g07250	anther	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
CYP704B2	Os03g0168600	LOC_Os03g07250	tapetal	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	We report here the isolation and characterization of a rice (Oryza sativa) male sterile mutant, cyp704B2, which exhibits a swollen sporophytic tapetal layer, aborted pollen grains without detectable exine, and undeveloped anther cuticle
CYP704B2	Os03g0168600	LOC_Os03g07250	pollen	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
CYP704B2	Os03g0168600	LOC_Os03g07250	anther	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	We report here the isolation and characterization of a rice (Oryza sativa) male sterile mutant, cyp704B2, which exhibits a swollen sporophytic tapetal layer, aborted pollen grains without detectable exine, and undeveloped anther cuticle
CYP704B2	Os03g0168600	LOC_Os03g07250	anther	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	In addition, chemical composition analysis indicated that cutin monomers were hardly detectable in the cyp704B2 anthers
CYP704B2	Os03g0168600	LOC_Os03g07250	anther	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	The CYP704B2 transcript is specifically detected in the tapetum and the microspore from stage 8 of anther development to stage 10
CYP704B2	Os03g0168600	LOC_Os03g07250	anther	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice
CYP704B2	Os03g0168600	LOC_Os03g07250	sterile	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	We report here the isolation and characterization of a rice (Oryza sativa) male sterile mutant, cyp704B2, which exhibits a swollen sporophytic tapetal layer, aborted pollen grains without detectable exine, and undeveloped anther cuticle
CYP704B2	Os03g0168600	LOC_Os03g07250	tapetum	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	The CYP704B2 transcript is specifically detected in the tapetum and the microspore from stage 8 of anther development to stage 10
CYP704B2	Os03g0168600	LOC_Os03g07250	anther development	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	The CYP704B2 transcript is specifically detected in the tapetum and the microspore from stage 8 of anther development to stage 10
CYP704B2	Os03g0168600	LOC_Os03g07250	cutin	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	In addition, chemical composition analysis indicated that cutin monomers were hardly detectable in the cyp704B2 anthers
CYP704B2	Os03g0168600	LOC_Os03g07250	cutin	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice
CYP704B2	Os03g0168600	LOC_Os03g07250	grain	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	We report here the isolation and characterization of a rice (Oryza sativa) male sterile mutant, cyp704B2, which exhibits a swollen sporophytic tapetal layer, aborted pollen grains without detectable exine, and undeveloped anther cuticle
CYP704B2	Os03g0168600	LOC_Os03g07250	cuticle	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	We report here the isolation and characterization of a rice (Oryza sativa) male sterile mutant, cyp704B2, which exhibits a swollen sporophytic tapetal layer, aborted pollen grains without detectable exine, and undeveloped anther cuticle
CYP704B2	Os03g0168600	LOC_Os03g07250	tapetal	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
CYP704B2	Os03g0168600	LOC_Os03g07250	microspore	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	The CYP704B2 transcript is specifically detected in the tapetum and the microspore from stage 8 of anther development to stage 10
CYP704B2	Os03g0168600	LOC_Os03g07250	pollen	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	We report here the isolation and characterization of a rice (Oryza sativa) male sterile mutant, cyp704B2, which exhibits a swollen sporophytic tapetal layer, aborted pollen grains without detectable exine, and undeveloped anther cuticle
CYP704B2	Os03g0168600	LOC_Os03g07250	pollen	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice	Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice
CYP714B1	Os07g0681300	LOC_Os07g48330	dwarf	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	Transgenic Arabidopsis plants that overexpress CYP714B1 or CYP714B2 show semidwarfism
CYP714B1	Os07g0681300	LOC_Os07g48330	insect	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	Functional analysis using yeast or insect cells shows that recombinant CYP714B1 and CYP714B2 proteins can convert GA(12) into GA(53) (13-OH GA(12)) in vitro
CYP714B1	Os07g0681300	LOC_Os07g48330	gibberellin	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice
CYP714B1	Os07g0681300	LOC_Os07g48330	ga	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	Here, we report that two cytochrome P450 genes, CYP714B1 and CYP714B2, encode GA 13-oxidase in rice
CYP714B1	Os07g0681300	LOC_Os07g48330	ga	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	These results indicate that CYP714B1 and CYP714B2 play a predominant role in GA 13-hydroxylation in rice
CYP714B2	Os03g0332100	LOC_Os03g21400|LOC_Os03g21419	ga	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	Here, we report that two cytochrome P450 genes, CYP714B1 and CYP714B2, encode GA 13-oxidase in rice
CYP714B2	Os03g0332100	LOC_Os03g21400|LOC_Os03g21419	ga	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	These results indicate that CYP714B1 and CYP714B2 play a predominant role in GA 13-hydroxylation in rice
CYP714B2	Os03g0332100	LOC_Os03g21400|LOC_Os03g21419	dwarf	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	Transgenic Arabidopsis plants that overexpress CYP714B1 or CYP714B2 show semidwarfism
CYP714B2	Os03g0332100	LOC_Os03g21400|LOC_Os03g21419	insect	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	Functional analysis using yeast or insect cells shows that recombinant CYP714B1 and CYP714B2 proteins can convert GA(12) into GA(53) (13-OH GA(12)) in vitro
CYP714B2	Os03g0332100	LOC_Os03g21400|LOC_Os03g21419	gibberellin	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice
CYP716A16	Os07g0518100	LOC_Os07g33440	resistance	Rice (Oryza sativa L.) cytochrome P450 protein 716A subfamily CYP716A16 regulates disease resistance.	 Overexpression (OE) of CYP716A16 resulted in enhanced resistance to R
CYP716A16	Os07g0518100	LOC_Os07g33440	disease	Rice (Oryza sativa L.) cytochrome P450 protein 716A subfamily CYP716A16 regulates disease resistance.	Rice (Oryza sativa L.) cytochrome P450 protein 716A subfamily CYP716A16 regulates disease resistance.
CYP716A16	Os07g0518100	LOC_Os07g33440	disease resistance	Rice (Oryza sativa L.) cytochrome P450 protein 716A subfamily CYP716A16 regulates disease resistance.	Rice (Oryza sativa L.) cytochrome P450 protein 716A subfamily CYP716A16 regulates disease resistance.
CYP72A31	Os01g0602200	LOC_Os01g41800	breeding	A novel rice cytochrome P450 gene, CYP72A31, confers tolerance to acetolactate synthase-inhibiting herbicides in rice and Arabidopsis	Thus, the CYP72A31 gene is a potentially useful genetic resource in the field of weed control, herbicide development, and molecular breeding in broad range of crop species
CYP734A2	Os02g0204700	LOC_Os02g11020	BR catabolism	Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice	Among these targets, BR catabolism genes CYP734A2, CYP734A4, and CYP734A6 were rapidly upregulated by OSH1 induction.
CYP734A4	Os06g0600400	LOC_Os06g39880	BR catabolism	Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice	Among these targets, BR catabolism genes CYP734A2, CYP734A4, and CYP734A6 were rapidly upregulated by OSH1 induction.
CYP734A6	Os01g0388000	LOC_Os01g29150	BR catabolism	Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice	Among these targets, BR catabolism genes CYP734A2, CYP734A4, and CYP734A6 were rapidly upregulated by OSH1 induction.
CYP76C6	Os08g0508000	LOC_Os08g39730	resistance	Expression of CYP76C6 Facilitates Isoproturon Metabolism and Detoxification in Rice.	 To verify the role of CYP76C6 in rice resistance to IPU toxicity, CYP76C6 overexpression (OEs) and knockout mutant rice by CRISPR/Cas9 were generated through genetic transformation and gene-editing technologies
CYP76C6	Os08g0508000	LOC_Os08g39730	isoproturon metabolism	Expression of CYP76C6 Facilitates Isoproturon Metabolism and Detoxification in Rice	Expression of CYP76C6 Facilitates Isoproturon Metabolism and Detoxification in Rice
CYP76C6	Os08g0508000	LOC_Os08g39730	detoxification	Expression of CYP76C6 Facilitates Isoproturon Metabolism and Detoxification in Rice	Expression of CYP76C6 Facilitates Isoproturon Metabolism and Detoxification in Rice
CYP87A3	Os04g0570000	LOC_Os04g48170	auxin	Auxin responsiveness of a novel cytochrome p450 in rice coleoptiles	Depletion of segments from endogenous auxin reduced the amount of CYP87A3 transcripts
CYP87A3	Os04g0570000	LOC_Os04g48170	auxin	Auxin responsiveness of a novel cytochrome p450 in rice coleoptiles	The role of CYP87A3 is discussed with respect to auxin signaling in the regulation of coleoptile growth
CYP87A3	Os04g0570000	LOC_Os04g48170	growth	Auxin responsiveness of a novel cytochrome p450 in rice coleoptiles	The role of CYP87A3 is discussed with respect to auxin signaling in the regulation of coleoptile growth
CYP90D3	Os05g0200400	LOC_Os05g11130	insect	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	However, in vitro biochemical assays using baculovirus/insect cell-produced proteins revealed that both CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of various 22-hydroxylated brassinosteroids, but with markedly different catalytic efficiencies
CYP90D3	Os05g0200400	LOC_Os05g11130	brassinosteroid	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	We report the biochemical characterization of two brassinosteroid-biosynthetic P450s from rice: CYP90D2 and CYP90D3
CYP90D3	Os05g0200400	LOC_Os05g11130	brassinosteroid	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	However, in vitro biochemical assays using baculovirus/insect cell-produced proteins revealed that both CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of various 22-hydroxylated brassinosteroids, but with markedly different catalytic efficiencies
CYP90D3	Os05g0200400	LOC_Os05g11130	brassinosteroid	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	These results indicate that CYP90D2 and CYP90D3 can act as brassinosteroid C-23 hydroxylases in rice
CYP90D3	Os05g0200400	LOC_Os05g11130	brassinosteroid	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro
CYP93G1|OsFNSII	Os04g0101400	LOC_Os04g01140	lignin	Disrupting Flavone Synthase II Alters Lignin and Improves Biomass Digestibility.	Interestingly, the loss of tricin in the mutant lignin appears to be partially compensated by incorporating naringenin which is a preferred substrate of OsFNSII
CYP93G1|OsFNSII	Os04g0101400	LOC_Os04g01140	seed	Flavonoids are indispensable for complete male fertility in rice.	Rice osf3h and cyp93g1 cyp93g2 CRISPR/Cas9 mutants, and cyp93g1 and cyp93g2 T-DNA insertional mutants showed altered flavonoid profiles in anthers but only osf3h and cyp93g1 cyp93g2 mutants displayed reduction in seed yield
CYP93G1|OsFNSII	Os04g0101400	LOC_Os04g01140	yield	Flavonoids are indispensable for complete male fertility in rice.	Rice osf3h and cyp93g1 cyp93g2 CRISPR/Cas9 mutants, and cyp93g1 and cyp93g2 T-DNA insertional mutants showed altered flavonoid profiles in anthers but only osf3h and cyp93g1 cyp93g2 mutants displayed reduction in seed yield
CYP93G1|OsFNSII	Os04g0101400	LOC_Os04g01140	flavonoid	Flavonoids are indispensable for complete male fertility in rice.	Rice osf3h and cyp93g1 cyp93g2 CRISPR/Cas9 mutants, and cyp93g1 and cyp93g2 T-DNA insertional mutants showed altered flavonoid profiles in anthers but only osf3h and cyp93g1 cyp93g2 mutants displayed reduction in seed yield
CYP93G2|qST-6.1	Os06g0102100	LOC_Os06g01250	seed	Flavonoids are indispensable for complete male fertility in rice.	 Rice osf3h and cyp93g1 cyp93g2 CRISPR/Cas9 mutants, and cyp93g1 and cyp93g2 T-DNA insertional mutants showed altered flavonoid profiles in anthers but only osf3h and cyp93g1 cyp93g2 mutants displayed reduction in seed yield
CYP93G2|qST-6.1	Os06g0102100	LOC_Os06g01250	yield	Flavonoids are indispensable for complete male fertility in rice.	 Rice osf3h and cyp93g1 cyp93g2 CRISPR/Cas9 mutants, and cyp93g1 and cyp93g2 T-DNA insertional mutants showed altered flavonoid profiles in anthers but only osf3h and cyp93g1 cyp93g2 mutants displayed reduction in seed yield
CYP93G2|qST-6.1	Os06g0102100	LOC_Os06g01250	flavonoid	Flavonoids are indispensable for complete male fertility in rice.	 Rice osf3h and cyp93g1 cyp93g2 CRISPR/Cas9 mutants, and cyp93g1 and cyp93g2 T-DNA insertional mutants showed altered flavonoid profiles in anthers but only osf3h and cyp93g1 cyp93g2 mutants displayed reduction in seed yield
CYP94C2a	Os12g0151400	None	jasmonate response	Elevated levels of CYP94 family gene expression alleviate the jasmonate response  and enhance salt tolerance in rice	Elevated levels of CYP94 family gene expression alleviate the jasmonate response  and enhance salt tolerance in rice
CYP94C2a	Os12g0151400	None	jasmonate	Elevated levels of CYP94 family gene expression alleviate the jasmonate response  and enhance salt tolerance in rice	Elevated levels of CYP94 family gene expression alleviate the jasmonate response  and enhance salt tolerance in rice
CYP94C2a	Os12g0151400	None	salt tolerance	Elevated levels of CYP94 family gene expression alleviate the jasmonate response  and enhance salt tolerance in rice	Elevated levels of CYP94 family gene expression alleviate the jasmonate response  and enhance salt tolerance in rice
CYP94C2a	Os12g0151400	None	salt	Elevated levels of CYP94 family gene expression alleviate the jasmonate response  and enhance salt tolerance in rice	Elevated levels of CYP94 family gene expression alleviate the jasmonate response  and enhance salt tolerance in rice
CYP94C2b	Os12g0150200	LOC_Os12g05440	ja	Elevated levels of CYP94 family gene expression alleviate the jasmonate response and enhance salt tolerance in rice.	Inactivation of JA was facilitated in a rice line with enhanced CYP94C2b expression, and responses to exogenous JA and wounding were alleviated
CYP94C2b	Os12g0150200	LOC_Os12g05440	JA	Elevated levels of CYP94 family gene expression alleviate the jasmonate response and enhance salt tolerance in rice.	Inactivation of JA was facilitated in a rice line with enhanced CYP94C2b expression, and responses to exogenous JA and wounding were alleviated
CYP94C2b	Os12g0150200	LOC_Os12g05440	wounding	Elevated levels of CYP94 family gene expression alleviate the jasmonate response and enhance salt tolerance in rice.	Inactivation of JA was facilitated in a rice line with enhanced CYP94C2b expression, and responses to exogenous JA and wounding were alleviated
CYP94C2b	Os12g0150200	LOC_Os12g05440	jasmonate response	Elevated levels of CYP94 family gene expression alleviate the jasmonate response and enhance salt tolerance in rice	Elevated levels of CYP94 family gene expression alleviate the jasmonate response and enhance salt tolerance in rice
CYP94C2b	Os12g0150200	LOC_Os12g05440	salt tolerance	Elevated levels of CYP94 family gene expression alleviate the jasmonate response and enhance salt tolerance in rice	Elevated levels of CYP94 family gene expression alleviate the jasmonate response and enhance salt tolerance in rice
CYP94C2b	Os12g0150200	LOC_Os12g05440	height	Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice.	Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice.
CYP94C2b	Os12g0150200	LOC_Os12g05440	internode length	Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice	Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice
CYP94C2b	Os12g0150200	LOC_Os12g05440	plant height	Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice	Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice
CYP96B5|WSL5	Os03g0140200	LOC_Os03g04660	leaf	Cytochrome P450 family member CYP96B5 hydroxylates alkanes to primary alcohols and is involved in rice leaf cuticular wax synthesis.	Cytochrome P450 family member CYP96B5 hydroxylates alkanes to primary alcohols and is involved in rice leaf cuticular wax synthesis.
CYP97A4	Os02g0817900	LOC_Os02g57290	sheath	Rice carotenoid beta-ring hydroxylase CYP97A4 is involved in lutein biosynthesis	The results revealed that CYP97A4 was preferentially expressed in leaf compared with spikelet, sheath, stalk and root, and encoded a protein localized at the subcellular level to the chloroplasts
CYP97A4	Os02g0817900	LOC_Os02g57290	spikelet	Rice carotenoid beta-ring hydroxylase CYP97A4 is involved in lutein biosynthesis	The results revealed that CYP97A4 was preferentially expressed in leaf compared with spikelet, sheath, stalk and root, and encoded a protein localized at the subcellular level to the chloroplasts
CYP97A4	Os02g0817900	LOC_Os02g57290	chloroplast	Rice carotenoid beta-ring hydroxylase CYP97A4 is involved in lutein biosynthesis	The results revealed that CYP97A4 was preferentially expressed in leaf compared with spikelet, sheath, stalk and root, and encoded a protein localized at the subcellular level to the chloroplasts
CYP97A4	Os02g0817900	LOC_Os02g57290	leaf	Rice carotenoid beta-ring hydroxylase CYP97A4 is involved in lutein biosynthesis	The results revealed that CYP97A4 was preferentially expressed in leaf compared with spikelet, sheath, stalk and root, and encoded a protein localized at the subcellular level to the chloroplasts
CYP97A4	Os02g0817900	LOC_Os02g57290	root	Rice carotenoid beta-ring hydroxylase CYP97A4 is involved in lutein biosynthesis	The results revealed that CYP97A4 was preferentially expressed in leaf compared with spikelet, sheath, stalk and root, and encoded a protein localized at the subcellular level to the chloroplasts
cZOGT1	Os04g0556500	LOC_Os04g46980	shoot	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT1	Os04g0556500	LOC_Os04g46980	crown	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT1	Os04g0556500	LOC_Os04g46980	root	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT1	Os04g0556500	LOC_Os04g46980	senescence	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT1	Os04g0556500	LOC_Os04g46980	leaf	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT1	Os04g0556500	LOC_Os04g46980	crown root	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT2	Os04g0556600	LOC_Os04g46990	shoot	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT2	Os04g0556600	LOC_Os04g46990	crown	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT2	Os04g0556600	LOC_Os04g46990	senescence	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT2	Os04g0556600	LOC_Os04g46990	leaf	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT2	Os04g0556600	LOC_Os04g46990	crown root	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT2	Os04g0556600	LOC_Os04g46990	root	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT3	Os04g0565400	LOC_Os04g47770	root	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT3	Os04g0565400	LOC_Os04g47770	leaf	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT3	Os04g0565400	LOC_Os04g47770	senescence	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT3	Os04g0565400	LOC_Os04g47770	shoot	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT3	Os04g0565400	LOC_Os04g47770	crown root	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
cZOGT3	Os04g0565400	LOC_Os04g47770	crown	Cytokinin activity of cis-zeatin and phenotypic alterations induced by overexpression of putative cis-Zeatin-O-glucosyltransferase in rice	Transgenic rice lines ectopically overexpressing the cZOGT1 and cZOGT2 genes exhibited short-shoot phenotypes, delay of leaf senescence, and decrease in crown root number, while cZOGT3 overexpressor lines did not show shortened shoots
D-h	Os01g0201275	LOC_Os01g10460	dwarf	Isolation and characterization of a dominant dwarf gene, d-h, in rice	Isolation and characterization of a dominant dwarf gene, d-h, in rice
D-h	Os01g0201275	LOC_Os01g10460	panicle	Isolation and characterization of a dominant dwarf gene, d-h, in rice	Real-time (RT)-PCR analysis and promoter activity assays showed that the d-h gene was primarily expressed in the nodes and the panicle
D-h	Os01g0201275	LOC_Os01g10460	ga	Isolation and characterization of a dominant dwarf gene, d-h, in rice	Since the mutant plants exhibit a defect in GA response, but not in the GA synthetic pathway, it appears that the d-h gene may be involved in a GA signaling pathway
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	BR signaling	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 protein is a positive regulator of BR response: it controls bending of the lamina joint in rice and it is a novel primary response gene that participates in two BR signaling pathways through OsBRI1 and RGA1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	brassinosteroid	Heterotrimeric G protein alpha subunit is involved in rice brassinosteroid response	In the present study, we used root elongation inhibition assay, lamina inclination assay and coleoptile elongation analysis to demonstrated reduced sensitivity of d1 mutant plants (caused by the null mutation of RGA) to 24-epibrassinolide (24-epiBL), which belongs to brassinosteroids and plays a wide variety of roles in plant growth and development
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	ethylene	Heterotrimeric G protein signaling is required for epidermal cell death in rice	In d1 plants, cell death in response to ethylene and H(2)O(2) was nearly completely abolished, indicating that signaling through Galpha is essential
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	seed	Study of novel d1 alleles, defective mutants of the α subunit of heterotrimeric G-protein in rice	Nine alleles of d1 showed a severer phenotype whilst d1-4 exhibited a mild phenotype with respect to seed size and elongation pattern of internodes
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	gibberellin	Rice gibberellin-insensitive dwarf mutant gene Dwarf1 encodes the alpha-subunit of GTP-binding protein	Because the d1 mutant is classified as gibberellin-insensitive, we suggest that the GTP-binding protein might be associated with gibberellin signal transduction
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	lamina	Heterotrimeric G protein alpha subunit is involved in rice brassinosteroid response	In the present study, we used root elongation inhibition assay, lamina inclination assay and coleoptile elongation analysis to demonstrated reduced sensitivity of d1 mutant plants (caused by the null mutation of RGA) to 24-epibrassinolide (24-epiBL), which belongs to brassinosteroids and plays a wide variety of roles in plant growth and development
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	A metastable DWARF1 epigenetic mutant affecting plant stature in rice	We identified a spontaneous rice mutant, Epi-d1, that shows a metastable dwarf phenotype
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	A metastable DWARF1 epigenetic mutant affecting plant stature in rice	The phenotype is mitotically and meiotically inheritable and corresponds to the metastable epigenetic silencing of the DWARF1 (D1) gene
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 BR 	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	To identify novel BR-related genes in rice (Oryza sativa), we monitored the transcriptomic response of the brassinosteroid deficient1 (brd1) mutant, with a defective BR biosynthetic gene, to brassinolide treatment
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 BR 	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	In addition, compared to the wild type, the induction of BU1 by exogenous brassinolide did not require de novo protein synthesis and it was weaker in a BR receptor mutant OsbriI (Oryza sativa brassinosteroid insensitive1, d61) and a rice G protein alpha subunit (RGA1) mutant d1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	gibberellin	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	Previous studies suggested that the heterotrimeric G protein alpha subunit known as D1/RGA1 in rice is involved in a phytohormone gibberellin-mediated signaling pathway
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	abiotic stress	Rice heterotrimeric G-protein alpha subunit (RGA1): in silico analysis of the gene and promoter and its upregulation under abiotic stress	Indica group Swarna [RGA1(I), accession number HQ634688], its promoter and its transcript upregulation in response to abiotic stresses
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	abiotic stress	Rice heterotrimeric G-protein alpha subunit (RGA1): in silico analysis of the gene and promoter and its upregulation under abiotic stress	Rice heterotrimeric G-protein alpha subunit (RGA1): in silico analysis of the gene and promoter and its upregulation under abiotic stress
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	brassinosteroid	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	In addition, compared to the wild type, the induction of BU1 by exogenous brassinolide did not require de novo protein synthesis and it was weaker in a BR receptor mutant OsbriI (Oryza sativa brassinosteroid insensitive1, d61) and a rice G protein alpha subunit (RGA1) mutant d1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	In this study, we report a D1 genetic interactor Taihu Dwarf1 (TUD1) that encodes a functional U-box E3 ubiquitin ligase
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	Histological observations showed that the dwarf phenotype of tud1 is mainly due to decreased cell proliferation and disorganized cell files in aerial organs
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 BR 	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	Genetic, phenotypic, and physiological analyses have shown that tud1 is epistatic to d1 and is less sensitive to BR treatment
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 BR 	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	This supports the idea that a D1-mediated BR signaling pathway occurs in rice to affect plant growth and development
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	lamina	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 protein is a positive regulator of BR response: it controls bending of the lamina joint in rice and it is a novel primary response gene that participates in two BR signaling pathways through OsBRI1 and RGA1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	growth	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	This supports the idea that a D1-mediated BR signaling pathway occurs in rice to affect plant growth and development
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	growth	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice	We used rice dwarf1 (d1) mutants lacking a single-copy Galpha gene and addressed Galpha's role in disease resistance
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	cellular proliferation	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions	The RGB1 knock-down lines generated in d1-5 were shorter, suggesting RGB1 to be a positive regulator of cellular proliferation, in addition to RGA1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	drought	Rice heterotrimeric G-protein alpha subunit (RGA1): in silico analysis of the gene and promoter and its upregulation under abiotic stress	The transcript profiling of RGA1(I) showed upregulation following NaCl, cold and drought stress
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	brassinosteroid	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	To identify novel BR-related genes in rice (Oryza sativa), we monitored the transcriptomic response of the brassinosteroid deficient1 (brd1) mutant, with a defective BR biosynthetic gene, to brassinolide treatment
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	brassinosteroid	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	Here, we describe a novel BR-induced rice gene BRASSINOSTEROID UPREGULATED1 (BU1), encoding a helix-loop-helix protein
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	brassinosteroid	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	leaf	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	The GA sensitivity of second leaf sheath elongation in d1 was similar to that of the wild type in terms of dose responsiveness, but the response of internode elongation to GA was much lower in d1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	disease resistance	The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice	We used rice dwarf1 (d1) mutants lacking a single-copy Galpha gene and addressed Galpha's role in disease resistance
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	lamina	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	seed	Function and expression pattern of the alpha subunit of the heterotrimeric G protein in rice	The d1 mutant, which is deficient for the heterotrimeric G-protein alpha subunit (Galpha) gene of rice, shows dwarfism and sets small round seeds
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	seed size	Study of novel d1 alleles, defective mutants of the α subunit of heterotrimeric G-protein in rice	Nine alleles of d1 showed a severer phenotype whilst d1-4 exhibited a mild phenotype with respect to seed size and elongation pattern of internodes
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	lamina	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions	Both transgenic lines showed browning of the lamina joint regions and nodes that could be attributed to a reduction of RGB1 function, as the abnormality was not observed in d1-5
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	Function and expression pattern of the alpha subunit of the heterotrimeric G protein in rice	The d1 mutant, which is deficient for the heterotrimeric G-protein alpha subunit (Galpha) gene of rice, shows dwarfism and sets small round seeds
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	Function and expression pattern of the alpha subunit of the heterotrimeric G protein in rice	To determine whether dwarfism in d1 is due to a reduction in cell number or to shortened cell length, the cell number of the leaf sheath, the internode, the root and the lemma was compared between Nipponbare, a wild-type rice and d1-5, a d1 allele derived from Nipponbare
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	lemma	Function and expression pattern of the alpha subunit of the heterotrimeric G protein in rice	To determine whether dwarfism in d1 is due to a reduction in cell number or to shortened cell length, the cell number of the leaf sheath, the internode, the root and the lemma was compared between Nipponbare, a wild-type rice and d1-5, a d1 allele derived from Nipponbare
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	lemma	Function and expression pattern of the alpha subunit of the heterotrimeric G protein in rice	In addition, cell enlargement was found in roots and lemma of d1-5, although the organ length in d1-5 was shorter than that of wild-type rice
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	disease	The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice	We used rice dwarf1 (d1) mutants lacking a single-copy Galpha gene and addressed Galpha's role in disease resistance
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	BR signaling	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	This supports the idea that a D1-mediated BR signaling pathway occurs in rice to affect plant growth and development
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	brassinosteroid	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	Evidence also implicates D1 in the action of a second phytohormone Brassinosteroid (BR) and its pathway
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	brassinosteroid	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 ga 	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	Compared with the wild type, GA induction of alpha-amylase activity in aleurone cells of d1 was greatly reduced
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 ga 	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	However, in the presence of high GA concentrations, alpha-amylase induction occurred even in d1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 ga 	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	The GA sensitivity of second leaf sheath elongation in d1 was similar to that of the wild type in terms of dose responsiveness, but the response of internode elongation to GA was much lower in d1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 ga 	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	Furthermore, Os20ox expression was up-regulated, and the GA content was elevated in the stunted internodes of d1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 ga 	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	In addition, a double mutant between d1 and another GA-signaling mutant, slr, revealed that SLR is epistatic to the D1, supporting that the Galpha protein is involved in GA signaling
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	brassinosteroid	Study of novel d1 alleles, defective mutants of the α subunit of heterotrimeric G-protein in rice	As brassinosteroid signaling was known to be partially impaired in d1s, the sensitivity to 24-epibrassinolide (24-epiBL) was compared among d1 alleles in a T65 genetic background
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	Heterotrimeric G protein signaling is required for epidermal cell death in rice	The dwarf1 (d1) mutant of rice has repressed expression of the Galpha subunit RGA1 of heterotrimeric G protein
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	blast	The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice	d1 mutants exhibited a highly reduced hypersensitive response to infection by an avirulent race of rice blast
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	blast	The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice	Expression of the constitutively active OsRac1, a small GTPase Rac of rice, in d1 mutants restored SE-dependent defense signaling and resistance to rice blast
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	root	Heterotrimeric G protein signaling is required for epidermal cell death in rice	Analysis of genes encoding proteins related to G protein signaling revealed that four small GTPase genes, two GTPase-activating protein genes, and one GDP dissociation inhibitor gene but not RGA1 were differentially expressed in epidermal cells above adventitious roots, indicating that Galpha activity is regulated posttranscriptionally
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	growth	Heterotrimeric G protein alpha subunit is involved in rice brassinosteroid response	In the present study, we used root elongation inhibition assay, lamina inclination assay and coleoptile elongation analysis to demonstrated reduced sensitivity of d1 mutant plants (caused by the null mutation of RGA) to 24-epibrassinolide (24-epiBL), which belongs to brassinosteroids and plays a wide variety of roles in plant growth and development
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	Previously, we reported that the rice dwarf mutant, d1, is defective in the alpha subunit of the heterotrimeric G protein (Galpha)
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	adventitious root	Heterotrimeric G protein signaling is required for epidermal cell death in rice	Analysis of genes encoding proteins related to G protein signaling revealed that four small GTPase genes, two GTPase-activating protein genes, and one GDP dissociation inhibitor gene but not RGA1 were differentially expressed in epidermal cells above adventitious roots, indicating that Galpha activity is regulated posttranscriptionally
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	root	Heterotrimeric G protein alpha subunit is involved in rice brassinosteroid response	In the present study, we used root elongation inhibition assay, lamina inclination assay and coleoptile elongation analysis to demonstrated reduced sensitivity of d1 mutant plants (caused by the null mutation of RGA) to 24-epibrassinolide (24-epiBL), which belongs to brassinosteroids and plays a wide variety of roles in plant growth and development
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	root	Function and expression pattern of the alpha subunit of the heterotrimeric G protein in rice	To determine whether dwarfism in d1 is due to a reduction in cell number or to shortened cell length, the cell number of the leaf sheath, the internode, the root and the lemma was compared between Nipponbare, a wild-type rice and d1-5, a d1 allele derived from Nipponbare
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	root	Function and expression pattern of the alpha subunit of the heterotrimeric G protein in rice	In addition, cell enlargement was found in roots and lemma of d1-5, although the organ length in d1-5 was shorter than that of wild-type rice
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	phytohormone	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	Previous studies suggested that the heterotrimeric G protein alpha subunit known as D1/RGA1 in rice is involved in a phytohormone gibberellin-mediated signaling pathway
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	sheath	Function and expression pattern of the alpha subunit of the heterotrimeric G protein in rice	To determine whether dwarfism in d1 is due to a reduction in cell number or to shortened cell length, the cell number of the leaf sheath, the internode, the root and the lemma was compared between Nipponbare, a wild-type rice and d1-5, a d1 allele derived from Nipponbare
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	phytohormone	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	Evidence also implicates D1 in the action of a second phytohormone Brassinosteroid (BR) and its pathway
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	sheath	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	The GA sensitivity of second leaf sheath elongation in d1 was similar to that of the wild type in terms of dose responsiveness, but the response of internode elongation to GA was much lower in d1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	defense	The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice	Expression of the constitutively active OsRac1, a small GTPase Rac of rice, in d1 mutants restored SE-dependent defense signaling and resistance to rice blast
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	gibberellin	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	In the present study, gibberellin (GA) signaling in d1 and the role of the Galpha protein in the GA-signaling pathway were investigated
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	gibberellin	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction	Rice dwarf mutantd1, which is defective in the a subunit of the heterotrimeric G protein, affects gibberellin signal transduction
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	leaf	Function and expression pattern of the alpha subunit of the heterotrimeric G protein in rice	To determine whether dwarfism in d1 is due to a reduction in cell number or to shortened cell length, the cell number of the leaf sheath, the internode, the root and the lemma was compared between Nipponbare, a wild-type rice and d1-5, a d1 allele derived from Nipponbare
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	 BR 	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 protein is a positive regulator of BR response: it controls bending of the lamina joint in rice and it is a novel primary response gene that participates in two BR signaling pathways through OsBRI1 and RGA1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	cell death	Heterotrimeric G protein signaling is required for epidermal cell death in rice	In d1 plants, cell death in response to ethylene and H(2)O(2) was nearly completely abolished, indicating that signaling through Galpha is essential
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	cell death	Heterotrimeric G protein signaling is required for epidermal cell death in rice	Transcriptional regulation was not generally affected in the d1 mutant, indicating that altered gene expression is not sufficient to trigger cell death in the absence of Galpha
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	development	The α-subunit of the rice heterotrimeric G protein, RGA1, regulates drought tolerance during the vegetative phase in the dwarf rice mutant d1.	Accordingly, it may be useful to incorporate RGA1 mutation in breeding or biotechnological strategies for development of drought-resistant rice
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	drought	The α-subunit of the rice heterotrimeric G protein, RGA1, regulates drought tolerance during the vegetative phase in the dwarf rice mutant d1.	We studied physiological responses to progressive drought of the dwarf rice mutant, d1, in which the RGA1 gene, which encodes the GTP-binding α-subunit of the heterotrimeric G protein, is non-functional
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	The α-subunit of the rice heterotrimeric G protein, RGA1, regulates drought tolerance during the vegetative phase in the dwarf rice mutant d1.	We studied physiological responses to progressive drought of the dwarf rice mutant, d1, in which the RGA1 gene, which encodes the GTP-binding α-subunit of the heterotrimeric G protein, is non-functional
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	breeding	The α-subunit of the rice heterotrimeric G protein, RGA1, regulates drought tolerance during the vegetative phase in the dwarf rice mutant d1.	Accordingly, it may be useful to incorporate RGA1 mutation in breeding or biotechnological strategies for development of drought-resistant rice
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	yield	Illuminating the role of the G�� heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photovoidance in rice.	 We therefore propose RGA1 as a regulator of photoavoidance and photoprotection mechanisms in rice and highlight the prospect of exploiting modulation of heterotrimeric G protein signaling to increase these characteristics and improve the yield of cereals in the event of abiotic stress
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	abiotic stress	Illuminating the role of the G�� heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photovoidance in rice.	 We therefore propose RGA1 as a regulator of photoavoidance and photoprotection mechanisms in rice and highlight the prospect of exploiting modulation of heterotrimeric G protein signaling to increase these characteristics and improve the yield of cereals in the event of abiotic stress
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	stress	Illuminating the role of the G�� heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photovoidance in rice.	 We therefore propose RGA1 as a regulator of photoavoidance and photoprotection mechanisms in rice and highlight the prospect of exploiting modulation of heterotrimeric G protein signaling to increase these characteristics and improve the yield of cereals in the event of abiotic stress
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	biotic stress	Illuminating the role of the G�� heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photovoidance in rice.	 We therefore propose RGA1 as a regulator of photoavoidance and photoprotection mechanisms in rice and highlight the prospect of exploiting modulation of heterotrimeric G protein signaling to increase these characteristics and improve the yield of cereals in the event of abiotic stress
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	dwarf	Illuminating the role of the G�� heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photovoidance in rice.	We studied physiological mechanisms of photoavoidance and photoprotection of a dwarf rice mutant with erect leaves, d1, in which the RGA1 gene, which encodes the G�� subunit of the heterotrimeric G protein, is non-functional
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	erect	Illuminating the role of the G�� heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photovoidance in rice.	We studied physiological mechanisms of photoavoidance and photoprotection of a dwarf rice mutant with erect leaves, d1, in which the RGA1 gene, which encodes the G�� subunit of the heterotrimeric G protein, is non-functional
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	salt	Proteomic Analysis of a Rice Mutant sd58 Possessing a Novel d1 Allele of Heterotrimeric G Protein Alpha Subunit (RGA1) in Salt Stress with a Focus on ROS Scavenging.	 Taken together, we propose that RGA1 is one of the regulators in salt response partially through ROS scavenging, which might be helpful in elucidating salt tolerant mechanisms of heterotrimeric G protein in rice
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	nitrogen	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 The detection results of 15N-ammonium nitrate and an expression analysis of genes associated with nitrogen demonstrated that LW5 serves an important role in nitrate uptake and transport
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	nitrogen	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 LW5 affects plant architecture and grain size by regulating nitrogen transfer
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	vascular bundle	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 The loss of LW5 functioning leads to an increase in the rate of photosynthesis, vascular bundles, and chlorophyll content
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	grain	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 LW5 affects plant architecture and grain size by regulating nitrogen transfer
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	map-based cloning	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 Map-based cloning and CRISPR-Cas9 gene editing indicated that LW5 affects both the plant architecture and yield
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	yield	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 Map-based cloning and CRISPR-Cas9 gene editing indicated that LW5 affects both the plant architecture and yield
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	grain size	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 LW5 affects plant architecture and grain size by regulating nitrogen transfer
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	architecture	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 Map-based cloning and CRISPR-Cas9 gene editing indicated that LW5 affects both the plant architecture and yield
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	architecture	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 LW5 affects plant architecture and grain size by regulating nitrogen transfer
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	nitrate	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 The detection results of 15N-ammonium nitrate and an expression analysis of genes associated with nitrogen demonstrated that LW5 serves an important role in nitrate uptake and transport
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	chlorophyll content	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 The loss of LW5 functioning leads to an increase in the rate of photosynthesis, vascular bundles, and chlorophyll content
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	plant architecture	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 Map-based cloning and CRISPR-Cas9 gene editing indicated that LW5 affects both the plant architecture and yield
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	plant architecture	Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency	 LW5 affects plant architecture and grain size by regulating nitrogen transfer
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	nitrogen	Heterotrimeric G-protein �� subunit (RGA1) regulates tiller development, yield, cell wall, nitrogen response and biotic stress in rice	 Transcription factor network analysis revealed the importance of RGA1 in nitrogen signaling with DEGs such as Nin-like, WRKY, NAC, bHLH families, nitrite reductase, glutamine synthetase, OsCIPK23 and urea transporter
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	transcription factor	Heterotrimeric G-protein �� subunit (RGA1) regulates tiller development, yield, cell wall, nitrogen response and biotic stress in rice	 Transcription factor network analysis revealed the importance of RGA1 in nitrogen signaling with DEGs such as Nin-like, WRKY, NAC, bHLH families, nitrite reductase, glutamine synthetase, OsCIPK23 and urea transporter
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	stress	Heterotrimeric G-protein �� subunit (RGA1) regulates tiller development, yield, cell wall, nitrogen response and biotic stress in rice	 Sub-clustering of DEGs-associated PPI network revealed that RGA1 regulates metabolism, stress and gene regulation among others
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	transporter	Heterotrimeric G-protein �� subunit (RGA1) regulates tiller development, yield, cell wall, nitrogen response and biotic stress in rice	 Transcription factor network analysis revealed the importance of RGA1 in nitrogen signaling with DEGs such as Nin-like, WRKY, NAC, bHLH families, nitrite reductase, glutamine synthetase, OsCIPK23 and urea transporter
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	drought	The �� subunit of the heterotrimeric G protein regulates mesophyll CO 2 conductance and drought tolerance in rice	 In this work, we investigated the role of heterotrimeric G proteins in gm and drought tolerance in rice d1 mutants, which harbor a null mutation in the G�� subunit gene, RGA1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	tolerance	The �� subunit of the heterotrimeric G protein regulates mesophyll CO 2 conductance and drought tolerance in rice	 In this work, we investigated the role of heterotrimeric G proteins in gm and drought tolerance in rice d1 mutants, which harbor a null mutation in the G�� subunit gene, RGA1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	drought tolerance	The �� subunit of the heterotrimeric G protein regulates mesophyll CO 2 conductance and drought tolerance in rice	 In this work, we investigated the role of heterotrimeric G proteins in gm and drought tolerance in rice d1 mutants, which harbor a null mutation in the G�� subunit gene, RGA1
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	spikelet	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.	 These results suggest that RGA1 could alleviate the low-light stress-induced impairment of pollen tube elongation to increase spikelet fertility by promoting sucrose unloading in the pistil and improving the metabolism and allocation of energy
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	fertility	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.	 These results suggest that RGA1 could alleviate the low-light stress-induced impairment of pollen tube elongation to increase spikelet fertility by promoting sucrose unloading in the pistil and improving the metabolism and allocation of energy
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	pollen	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	pollen	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.	 These results suggest that RGA1 could alleviate the low-light stress-induced impairment of pollen tube elongation to increase spikelet fertility by promoting sucrose unloading in the pistil and improving the metabolism and allocation of energy
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	sucrose	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.	 These results suggest that RGA1 could alleviate the low-light stress-induced impairment of pollen tube elongation to increase spikelet fertility by promoting sucrose unloading in the pistil and improving the metabolism and allocation of energy
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	pollen tube elongation	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.
D1|RGA1|LW5	Os05g0333200	LOC_Os05g26890	pollen tube elongation	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.	 These results suggest that RGA1 could alleviate the low-light stress-induced impairment of pollen tube elongation to increase spikelet fertility by promoting sucrose unloading in the pistil and improving the metabolism and allocation of energy
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	tillering	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Besides, in D10-RNAi plants, decreased storage cytokinin levels in the shoot node may partly account for the increased active cytokinin contents, resulting in more tillering phenotypes
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	auxin	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Real-time polymerase chain reaction analysis revealed that accumulation of D10 mRNA is induced by exogenous auxin
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	shoot	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	D10 is a rice ortholog of MAX4/RMS1/DAD1 that encodes a carotenoid cleavage dioxygenase 8 and is supposed to be involved in the synthesis of an unidentified inhibitor of shoot branching
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	growth	A new lead chemical for strigolactone biosynthesis inhibitors	We discovered a triazole-type chemical, TIS13 [2,2-dimethyl-7-phenoxy-4-(1H-1,2,4-triazol-1-yl)heptan-3-ol], which induced outgrowth of second tiller buds of wild-type seedlings, as observed for non-treated strigolactone-deficient d10 mutant seedlings
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	tiller	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	auxin	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Here we use D10- RNA interference (RNAi) transgenic plants similar to d10 mutant in phenotypes to investigate the interactions among D10, auxin and cytokinin in regulating rice shoot branching
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	auxin	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Auxin levels in node 1 of both decapitated D10-RNAi and wild type plants decreased significantly, showing that decapitation does reduce endogenous auxin concentration, but decapitation has no clear effects on auxin levels in node 2 of the same plants
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	auxin	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	This implies that node 1 may be the location where a possible interaction between auxin and D10 gene would be detected
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	auxin	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	D10 expression in node 1 is inhibited by decapitation, and this inhibition can be restored by exogenous auxin application, indicating that D10 may play an important role in auxin regulation of SL
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	auxin	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	The decreased expression of most OsPINs in shoot nodes of D10-RNAi plants may cause a reduced auxin transport capacity
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	auxin	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Furthermore, effects of auxin treatment of decapitated plants on the expression of cytokinin biosynthetic genes suggest that D10 promotes cytokinin biosynthesis by reducing auxin levels
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	meristem	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	In dwarf10 (d10), an enhanced branching mutant of rice, apical dominance can be observed, but the inhibitory effects of the apical meristem was reduced
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	shoot	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	The d14 mutant exhibits increased shoot branch-ing with reduced plant height like the previously characterized strigolactone-deficient and -insensitive mutants d10 and d3, respectively
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	branching	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	However, unlike with d10, the d14 branching phenotype could not be rescued by exogenous strigolactones
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	strigolactone	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	Loss of function of HTD2 resulted in a significantly increased expression of HTD1, D10 and D3, which were involved in the strigolactone biosynthetic pathway
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	cell death	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	Moreover, the mRNA levels of D3, HTD1 and D10, which are orthologs of Arabidopsis MAX2/ORE9, MAX3 and MAX4, respectively, increased during cell death
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	dwarf	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	In dwarf10 (d10), an enhanced branching mutant of rice, apical dominance can be observed, but the inhibitory effects of the apical meristem was reduced
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	dwarf	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	tiller	A new lead chemical for strigolactone biosynthesis inhibitors	We discovered a triazole-type chemical, TIS13 [2,2-dimethyl-7-phenoxy-4-(1H-1,2,4-triazol-1-yl)heptan-3-ol], which induced outgrowth of second tiller buds of wild-type seedlings, as observed for non-treated strigolactone-deficient d10 mutant seedlings
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	tiller	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Besides, in D10-RNAi plants, decreased storage cytokinin levels in the shoot node may partly account for the increased active cytokinin contents, resulting in more tillering phenotypes
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	cytokinin	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Here we use D10- RNA interference (RNAi) transgenic plants similar to d10 mutant in phenotypes to investigate the interactions among D10, auxin and cytokinin in regulating rice shoot branching
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	cytokinin	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Furthermore, effects of auxin treatment of decapitated plants on the expression of cytokinin biosynthetic genes suggest that D10 promotes cytokinin biosynthesis by reducing auxin levels
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	cytokinin	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Besides, in D10-RNAi plants, decreased storage cytokinin levels in the shoot node may partly account for the increased active cytokinin contents, resulting in more tillering phenotypes
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	shoot	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Here we use D10- RNA interference (RNAi) transgenic plants similar to d10 mutant in phenotypes to investigate the interactions among D10, auxin and cytokinin in regulating rice shoot branching
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	shoot	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	The decreased expression of most OsPINs in shoot nodes of D10-RNAi plants may cause a reduced auxin transport capacity
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	shoot	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Besides, in D10-RNAi plants, decreased storage cytokinin levels in the shoot node may partly account for the increased active cytokinin contents, resulting in more tillering phenotypes
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	height	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	The d14 mutant exhibits increased shoot branch-ing with reduced plant height like the previously characterized strigolactone-deficient and -insensitive mutants d10 and d3, respectively
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	strigolactone	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	The d14 mutant exhibits increased shoot branch-ing with reduced plant height like the previously characterized strigolactone-deficient and -insensitive mutants d10 and d3, respectively
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	strigolactone	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	However, unlike with d10, the d14 branching phenotype could not be rescued by exogenous strigolactones
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	tillering	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	strigolactone	A new lead chemical for strigolactone biosynthesis inhibitors	We discovered a triazole-type chemical, TIS13 [2,2-dimethyl-7-phenoxy-4-(1H-1,2,4-triazol-1-yl)heptan-3-ol], which induced outgrowth of second tiller buds of wild-type seedlings, as observed for non-treated strigolactone-deficient d10 mutant seedlings
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	strigolactone	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Previous studies have shown that DWARF10 (D10) is a rice ortholog of MAX4/RMS1/DAD1, encoding a carotenoid cleavage dioxygenase and functioning in strigolactones/strigolactone-derivatives (SL) biosynthesis
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	seedling	A new lead chemical for strigolactone biosynthesis inhibitors	We discovered a triazole-type chemical, TIS13 [2,2-dimethyl-7-phenoxy-4-(1H-1,2,4-triazol-1-yl)heptan-3-ol], which induced outgrowth of second tiller buds of wild-type seedlings, as observed for non-treated strigolactone-deficient d10 mutant seedlings
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	dwarf	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Previous studies have shown that DWARF10 (D10) is a rice ortholog of MAX4/RMS1/DAD1, encoding a carotenoid cleavage dioxygenase and functioning in strigolactones/strigolactone-derivatives (SL) biosynthesis
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	branching	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	In dwarf10 (d10), an enhanced branching mutant of rice, apical dominance can be observed, but the inhibitory effects of the apical meristem was reduced
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	branching	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	D10 is a rice ortholog of MAX4/RMS1/DAD1 that encodes a carotenoid cleavage dioxygenase 8 and is supposed to be involved in the synthesis of an unidentified inhibitor of shoot branching
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	branching	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	branching	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	These findings imply that D10 transcription might be a critical step in the regulation of the branching inhibitor pathway
D10|OsCCD8|OsCCD8b	Os01g0746400	LOC_Os01g54270	branching	The interactions among DWARF10, auxin and cytokinin underlie lateral bud outgrowth in rice	Here we use D10- RNA interference (RNAi) transgenic plants similar to d10 mutant in phenotypes to investigate the interactions among D10, auxin and cytokinin in regulating rice shoot branching
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	brassinosteroid	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Molecular and biochemical studies reveal that two different cytochrome P450s, CYP90B2/OsDWARF4 and CYP724B1/D11, function redundantly in C-22 hydroxylation, the rate-limiting step of brassinosteroid biosynthesis
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	brassinosteroid	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length	The gene was found to encode a novel cytochrome P450 (CYP724B1), which showed homology to enzymes involved in brassinosteroid (BR) biosynthesis
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	dwarf	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Molecular and biochemical studies reveal that two different cytochrome P450s, CYP90B2/OsDWARF4 and CYP724B1/D11, function redundantly in C-22 hydroxylation, the rate-limiting step of brassinosteroid biosynthesis
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	BR	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length	Precise determination of the defective step(s) in BR synthesis in d11 mutants proved intractable because of tissue specificity and the complex control of BR accumulation in plants
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	BR	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length	However, 6-deoxotyphasterol (6-DeoxoTY) and typhasterol (TY), but not any upstream intermediates before these compounds, effectively restored BR response in d11 mutants in a lamina joint bending assay
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	BR	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length	Multiple lines of evidence together suggest that the D11/CYP724B1 gene plays a role in BR synthesis and may be involved in the supply of 6-DeoxoTY and TY in the BR biosynthesis network in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	lamina	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length	However, 6-deoxotyphasterol (6-DeoxoTY) and typhasterol (TY), but not any upstream intermediates before these compounds, effectively restored BR response in d11 mutants in a lamina joint bending assay
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	brassinosteroid	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice	Consistently, transcriptome analyses revealed that SDG725 depletion results in down-regulation by more than two-fold of over 1000 genes, including D11, BRI1 and BU1, which are known to be involved in brassinosteroid biosynthesis or signaling pathways
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	BR	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	Furthermore, RAVL1 is also required for the expression of the BR biosynthetic genes D2, D11, and BRD1 that are subject to BR negative feedback
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	seed	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length	We have characterized a rice (Oryza sativa) dwarf mutant, dwarf11 (d11), that bears seeds of reduced length
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	seed	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length	To understand the mechanism by which seed length is regulated, the D11 gene was isolated by a map-based cloning method
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	dwarf	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length	We have characterized a rice (Oryza sativa) dwarf mutant, dwarf11 (d11), that bears seeds of reduced length
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	dwarf	A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length	The dwarf phenotype of d11 mutants was restored by the application of the brassinolide (BL)
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	leaf	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Overexpression of CPB1/D11 under the background of cpb1 mutant not only rescued normal panicle architecture and plant height, but also had a larger leaf angle and seed size than the controls
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	panicle	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Genetic transformation experiments confirmed that a His360Leu amino acid substitution residing in the highly conserved region of CPB1/D11 was responsible for the panicle architecture and seed size changes in the cpb1 mutants
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	panicle	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Overexpression of CPB1/D11 under the background of cpb1 mutant not only rescued normal panicle architecture and plant height, but also had a larger leaf angle and seed size than the controls
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	seed	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Genetic transformation experiments confirmed that a His360Leu amino acid substitution residing in the highly conserved region of CPB1/D11 was responsible for the panicle architecture and seed size changes in the cpb1 mutants
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	seed	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Overexpression of CPB1/D11 under the background of cpb1 mutant not only rescued normal panicle architecture and plant height, but also had a larger leaf angle and seed size than the controls
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	architecture	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Genetic transformation experiments confirmed that a His360Leu amino acid substitution residing in the highly conserved region of CPB1/D11 was responsible for the panicle architecture and seed size changes in the cpb1 mutants
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	architecture	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Overexpression of CPB1/D11 under the background of cpb1 mutant not only rescued normal panicle architecture and plant height, but also had a larger leaf angle and seed size than the controls
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	seed size	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Genetic transformation experiments confirmed that a His360Leu amino acid substitution residing in the highly conserved region of CPB1/D11 was responsible for the panicle architecture and seed size changes in the cpb1 mutants
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	seed size	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Overexpression of CPB1/D11 under the background of cpb1 mutant not only rescued normal panicle architecture and plant height, but also had a larger leaf angle and seed size than the controls
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	panicle architecture	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Genetic transformation experiments confirmed that a His360Leu amino acid substitution residing in the highly conserved region of CPB1/D11 was responsible for the panicle architecture and seed size changes in the cpb1 mutants
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	panicle architecture	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Overexpression of CPB1/D11 under the background of cpb1 mutant not only rescued normal panicle architecture and plant height, but also had a larger leaf angle and seed size than the controls
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	panicle	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Overexpression of GNS4 significantly increased organ size, 1000-grain weight, and panicle size, and subsequently enhanced grain yields in both the Nipponbare and Wuyunjing7 (a high-yielding cultivar) backgrounds
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	A single nucleotide polymorphism (deletion) in the promoter region of GNS4 reduced its expression level in the mutant, leading to reduced grain number and smaller grains
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Morphological and cellular analyses suggested that GNS4 positively regulates grain size by promoting cell elongation
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Overexpression of GNS4 significantly increased organ size, 1000-grain weight, and panicle size, and subsequently enhanced grain yields in both the Nipponbare and Wuyunjing7 (a high-yielding cultivar) backgrounds
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	GNS4 was identified as a positive regulator of grain number and grain size in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grains per panicle	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	We characterized a rice mutant gns4 (grain number and size on chromosome 4) with reduced organ size, fewer grains per panicle, and smaller grains compared with those of WT
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain number	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	We characterized a rice mutant gns4 (grain number and size on chromosome 4) with reduced organ size, fewer grains per panicle, and smaller grains compared with those of WT
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain number	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	A single nucleotide polymorphism (deletion) in the promoter region of GNS4 reduced its expression level in the mutant, leading to reduced grain number and smaller grains
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain number	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	GNS4 was identified as a positive regulator of grain number and grain size in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	map-based cloning	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Map-based cloning indicated that the GNS4 gene, encoding a cytochrome P450 protein, is a novel allele of DWARF11 (D11)
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain yield	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Overexpression of GNS4 significantly increased organ size, 1000-grain weight, and panicle size, and subsequently enhanced grain yields in both the Nipponbare and Wuyunjing7 (a high-yielding cultivar) backgrounds
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	yield	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	These results suggest that GNS4 is key target gene with possible applications in rice yield breeding
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain size	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Morphological and cellular analyses suggested that GNS4 positively regulates grain size by promoting cell elongation
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain size	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	GNS4 was identified as a positive regulator of grain number and grain size in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	cell elongation	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Morphological and cellular analyses suggested that GNS4 positively regulates grain size by promoting cell elongation
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	breeding	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	These results suggest that GNS4 is key target gene with possible applications in rice yield breeding
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	breeding	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	GNS4 can be targeted in breeding programs to increase yields
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	grain weight	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Overexpression of GNS4 significantly increased organ size, 1000-grain weight, and panicle size, and subsequently enhanced grain yields in both the Nipponbare and Wuyunjing7 (a high-yielding cultivar) backgrounds
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	organ size	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	We characterized a rice mutant gns4 (grain number and size on chromosome 4) with reduced organ size, fewer grains per panicle, and smaller grains compared with those of WT
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	organ size	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Overexpression of GNS4 significantly increased organ size, 1000-grain weight, and panicle size, and subsequently enhanced grain yields in both the Nipponbare and Wuyunjing7 (a high-yielding cultivar) backgrounds
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	panicle size	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Overexpression of GNS4 significantly increased organ size, 1000-grain weight, and panicle size, and subsequently enhanced grain yields in both the Nipponbare and Wuyunjing7 (a high-yielding cultivar) backgrounds
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	panicle	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Overall, it can be concluded that PMM1 is an important gene involved in BRs biosynthesis and affecting the differentiation of spikelet primordia and patterns of panicle branches in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	panicle	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Overexpression of D4 could successfully rescue the abnormal panicle architecture of pmm1 plants, indicating that PMM1/D11 and D4 function redundantly in BRs biosynthesis
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	spikelet	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Overall, it can be concluded that PMM1 is an important gene involved in BRs biosynthesis and affecting the differentiation of spikelet primordia and patterns of panicle branches in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	development	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	PMM1 is a new allele of DWARF11 (D11) PMM1 transcripts are preferentially expressed in young panicles, particularly expressed in the primordia of branches and spikelets during inflorescence development
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	map-based cloning	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Map-based cloning revealed that a large fragment deletion from the 2nd to 9th exons of PMM1 was responsible for the clustered primary branch morphology in pmm1-1
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	inflorescence	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	PMM1 is a new allele of DWARF11 (D11) PMM1 transcripts are preferentially expressed in young panicles, particularly expressed in the primordia of branches and spikelets during inflorescence development
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	inflorescence	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Thus, our results demonstrated that PMM1 determines the inflorescence architecture by controlling brassinosteroid biosynthesis in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	architecture	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Overexpression of D4 could successfully rescue the abnormal panicle architecture of pmm1 plants, indicating that PMM1/D11 and D4 function redundantly in BRs biosynthesis
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	architecture	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Thus, our results demonstrated that PMM1 determines the inflorescence architecture by controlling brassinosteroid biosynthesis in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	inflorescence architecture	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Thus, our results demonstrated that PMM1 determines the inflorescence architecture by controlling brassinosteroid biosynthesis in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	brassinosteroid	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Thus, our results demonstrated that PMM1 determines the inflorescence architecture by controlling brassinosteroid biosynthesis in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	Brassinosteroid	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Thus, our results demonstrated that PMM1 determines the inflorescence architecture by controlling brassinosteroid biosynthesis in rice
D11|CPB1|CYP724B1|GNS4|PMM1	Os04g0469800	LOC_Os04g39430	panicle architecture	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	Overexpression of D4 could successfully rescue the abnormal panicle architecture of pmm1 plants, indicating that PMM1/D11 and D4 function redundantly in BRs biosynthesis
D14L	Os03g0437600	LOC_Os03g32270	vascular bundle	Downregulation of Rice DWARF 14 LIKE Suppress Mesocotyl Elongation via a Strigolactone Independent Pathway in the Dark.	D14L mRNA is predominantly expressed in vascular bundles and crown root primordia
D14L	Os03g0437600	LOC_Os03g32270	root	Downregulation of Rice DWARF 14 LIKE Suppress Mesocotyl Elongation via a Strigolactone Independent Pathway in the Dark.	D14L mRNA is predominantly expressed in vascular bundles and crown root primordia
D14L	Os03g0437600	LOC_Os03g32270	crown	Downregulation of Rice DWARF 14 LIKE Suppress Mesocotyl Elongation via a Strigolactone Independent Pathway in the Dark.	D14L mRNA is predominantly expressed in vascular bundles and crown root primordia
D14L	Os03g0437600	LOC_Os03g32270	crown root	Downregulation of Rice DWARF 14 LIKE Suppress Mesocotyl Elongation via a Strigolactone Independent Pathway in the Dark.	D14L mRNA is predominantly expressed in vascular bundles and crown root primordia
D14L	Os03g0437600	LOC_Os03g32270	root	Independent signalling cues underpin arbuscular mycorrhizal symbiosis and large lateral root induction in rice.	After 6<U+00A0>wk post-inoculation with Rhizophagus irregularis, root developmental responses, fungal colonization and transcriptional responses were monitored in two independent cerk1 null mutants; a deletion mutant lacking D14L, and with D14L complemented as well as their respective wild-type cultivars (cv Nipponbare and Nihonmasari)
D14L	Os03g0437600	LOC_Os03g32270	root	Independent signalling cues underpin arbuscular mycorrhizal symbiosis and large lateral root induction in rice.	Here we show that although essential for symbiosis, D14L is dispensable for AMF-induced root architectural modulation, which conversely relies on CERK1
D14L	Os03g0437600	LOC_Os03g32270	root development	Independent signalling cues underpin arbuscular mycorrhizal symbiosis and large lateral root induction in rice.	After 6<U+00A0>wk post-inoculation with Rhizophagus irregularis, root developmental responses, fungal colonization and transcriptional responses were monitored in two independent cerk1 null mutants; a deletion mutant lacking D14L, and with D14L complemented as well as their respective wild-type cultivars (cv Nipponbare and Nihonmasari)
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	ga	Gibberellin is not a regulator of miR156 in rice juvenile-adult phase change	To confirm the functions of GA in rice, I used dwarf mutant d18-dy
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	ga	Gibberellin is not a regulator of miR156 in rice juvenile-adult phase change	In addition, d18-dy mutation and GA did not affect expression levels of downstream genes of miR156
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	shoot	Gibberellin is not a regulator of miR156 in rice juvenile-adult phase change	d18-dy mutant exhibited long juvenile phase in morphological traits such as the size of the shoot apical meristem (SAM), shape of leaf blades, presence or absence of midribs and node–internode differentiation in stem
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	leaf	Gibberellin is not a regulator of miR156 in rice juvenile-adult phase change	d18-dy mutant exhibited long juvenile phase in morphological traits such as the size of the shoot apical meristem (SAM), shape of leaf blades, presence or absence of midribs and node–internode differentiation in stem
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	gibberellin	Cloning and functional analysis of two gibberellin 3 beta -hydroxylase genes that are differently expressed during the growth of rice	We have cloned two gibberellin (GA) 3 beta-hydroxylase genes, OsGA3ox1 and OsGA3ox2, from rice by screening a genomic library with a DNA fragment obtained by PCR using degenerate primers
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	dwarf	Gibberellin is not a regulator of miR156 in rice juvenile-adult phase change	To confirm the functions of GA in rice, I used dwarf mutant d18-dy
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	ga	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Consistent with the dwarf phenotype of gd1, expression of the gibberelic acid (GA) inactivation gene OsGA2ox3 is increased dramatically, accompanied by reduced expression of GA biosynthetic genes including OsGA20ox1, OsGA20ox2 and OsGA3ox2 in gd1, resulting in a decreased endogenous GA(4) level
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	stem	Gibberellin is not a regulator of miR156 in rice juvenile-adult phase change	d18-dy mutant exhibited long juvenile phase in morphological traits such as the size of the shoot apical meristem (SAM), shape of leaf blades, presence or absence of midribs and node–internode differentiation in stem
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	meristem	Gibberellin is not a regulator of miR156 in rice juvenile-adult phase change	d18-dy mutant exhibited long juvenile phase in morphological traits such as the size of the shoot apical meristem (SAM), shape of leaf blades, presence or absence of midribs and node–internode differentiation in stem
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	ga	The multiple contributions of phytochromes to the control of internode elongation in rice	These findings indicate that phytochromes contribute to multiple steps in the control of internode elongation, such as the expression of the GA biosynthesis gene OsGA3ox2, ACO1 expression, and the onset of internode elongation
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	shoot apical meristem	Gibberellin is not a regulator of miR156 in rice juvenile-adult phase change	d18-dy mutant exhibited long juvenile phase in morphological traits such as the size of the shoot apical meristem (SAM), shape of leaf blades, presence or absence of midribs and node–internode differentiation in stem
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	dwarf	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Consistent with the dwarf phenotype of gd1, expression of the gibberelic acid (GA) inactivation gene OsGA2ox3 is increased dramatically, accompanied by reduced expression of GA biosynthetic genes including OsGA20ox1, OsGA20ox2 and OsGA3ox2 in gd1, resulting in a decreased endogenous GA(4) level
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	GA biosynthetic	Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in rice	BR greatly induces the expression of D18/GA3ox-2, one of the GA biosynthetic genes, leading to increased GA1 levels, the bioactive GA in rice seedlings.
d18|OsGA3ox2	Os01g0177400	LOC_Os01g08220	GA	Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in rice	BR greatly induces the expression of D18/GA3ox-2, one of the GA biosynthetic genes, leading to increased GA1 levels, the bioactive GA in rice seedlings.
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	 BR 	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa)	Our chemical analysis suggested that CYP90D2/D2 might catalyze C-3 dehydrogenation step in BR biosynthesis
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	 BR 	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450	The accumulation profile of BR intermediates in the d2 mutants confirmed that these plants are deficient in late BR biosynthesis
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	 BR 	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450	The D2 gene encoded a novel cytochrome P450 classified in CYP90D that is highly similar to the reported BR synthesis enzymes
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	 BR 	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450	Based on these results, we conclude that D2/CYP90D2 catalyzes the steps from 6-deoxoteasterone to 3-dehydro-6-deoxoteasterone and from teasterone to 3-dehydroteasterone in the late BR biosynthesis pathway
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	 BR 	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	Furthermore, RAVL1 is also required for the expression of the BR biosynthetic genes D2, D11, and BRD1 that are subject to BR negative feedback
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa)	Allelic mutations of CYP90D2/D2 confer varying degrees of dwarfism and leaf angle, thus providing useful information for molecular breeding in grain crop plants
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	lamina	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450	In feeding experiments, 3-dehydro-6-deoxoteasterone, 3-dehydroteasterone, and brassinolide effectively caused the lamina joints of the d2 plants to bend, whereas more upstream compounds did not cause bending
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	insect	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	However, in vitro biochemical assays using baculovirus/insect cell-produced proteins revealed that both CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of various 22-hydroxylated brassinosteroids, but with markedly different catalytic efficiencies
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	breeding	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa)	Allelic mutations of CYP90D2/D2 confer varying degrees of dwarfism and leaf angle, thus providing useful information for molecular breeding in grain crop plants
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	dwarf	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa)	We showed that the severe dwarf phenotype was caused by a complete deletion of a cytochrome P450 gene, CYP90D2/D2, which was further confirmed in two independent T-DNA insertion lines in different genetic backgrounds and by RNA interference
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	dwarf	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa)	Allelic mutations of CYP90D2/D2 confer varying degrees of dwarfism and leaf angle, thus providing useful information for molecular breeding in grain crop plants
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	architecture	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa)	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa)
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	leaf	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa)	Allelic mutations of CYP90D2/D2 confer varying degrees of dwarfism and leaf angle, thus providing useful information for molecular breeding in grain crop plants
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	brassinosteroid	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	dwarf	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	A rice dwarf mutant, ebisu dwarf (d2), which contains a defective copy of CYP90D2, is known to be a brassinosteroid-deficient mutant, and CYP90D2 has been considered to act as a C-3 dehydrogenase
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	dwarf	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450	We characterized a rice dwarf mutant, ebisu dwarf (d2)
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	dwarf	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450	The dwarf phenotype of d2 was rescued by exogenous brassinolide treatment
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	dwarf	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	brassinosteroid	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	We report the biochemical characterization of two brassinosteroid-biosynthetic P450s from rice: CYP90D2 and CYP90D3
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	brassinosteroid	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	A rice dwarf mutant, ebisu dwarf (d2), which contains a defective copy of CYP90D2, is known to be a brassinosteroid-deficient mutant, and CYP90D2 has been considered to act as a C-3 dehydrogenase
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	brassinosteroid	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	However, in vitro biochemical assays using baculovirus/insect cell-produced proteins revealed that both CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of various 22-hydroxylated brassinosteroids, but with markedly different catalytic efficiencies
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	brassinosteroid	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	These results indicate that CYP90D2 and CYP90D3 can act as brassinosteroid C-23 hydroxylases in rice
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	brassinosteroid	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	SMG11 controls grain size by promoting cell expansion in grain hulls
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	SMG11 regulates cell expansion, at least in part, by influencing expression of several grain size genes involved in the regulation of cell expansion
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	The suitable expression of SMG11 increases grain size, grain weight and grain yield
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain yield	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	The suitable expression of SMG11 increases grain size, grain weight and grain yield
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	yield	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	The suitable expression of SMG11 increases grain size, grain weight and grain yield
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain size	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	SMG11 controls grain size by promoting cell expansion in grain hulls
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain size	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	SMG11 regulates cell expansion, at least in part, by influencing expression of several grain size genes involved in the regulation of cell expansion
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain size	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	The suitable expression of SMG11 increases grain size, grain weight and grain yield
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	brassinosteroid	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	Cloning and sequence analyses of the SMG11 gene reveal that smg11 is a new allele of DWARF2 (D2), which encodes a cytochrome P450 (CYP90D2) involved in brassinosteroid biosynthetic pathway
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	Brassinosteroid	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	Cloning and sequence analyses of the SMG11 gene reveal that smg11 is a new allele of DWARF2 (D2), which encodes a cytochrome P450 (CYP90D2) involved in brassinosteroid biosynthetic pathway
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain weight	SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice.	The suitable expression of SMG11 increases grain size, grain weight and grain yield
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice.	 These results suggest that OsD2 is associated with the regulation of LTG and improving grain size
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	grain size	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice.	 These results suggest that OsD2 is associated with the regulation of LTG and improving grain size
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	brassinosteroid	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice.	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice.
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	Brassinosteroid	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice.	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice.
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	yield	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice.	 Thus, OsD2 may be a suitable target for rice breeding programs to improve rice yield and LTG
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	breeding	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice.	 Thus, OsD2 may be a suitable target for rice breeding programs to improve rice yield and LTG
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	brassinosteroid biosynthesis	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	low-temperature germinability	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	low-temperature	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice
D2|CYP90D2|SMG11|OsD2	Os01g0197100	LOC_Os01g10040	germinability	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice	Brassinosteroid biosynthesis gene OsD2 is associated with low-temperature germinability in rice
D27	None	LOC_Os11g37650	strigolactone	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	In addition, 2'-epi-5-deoxystrigol, an identified strigolactone in root exudates of rice seedlings, was undetectable in d27, and the phenotypes of d27 could be rescued by supplementation with GR24, a synthetic strigolactone analog
D27	None	LOC_Os11g37650	strigolactone	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	Our results demonstrate that D27 is involved in the MAX/RMS/D pathway, in which D27 acts as a new member participating in the biosynthesis of strigolactones
D27	None	LOC_Os11g37650	root	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	D27 encodes a novel iron-containing protein that localizes in chloroplasts and is expressed mainly in vascular cells of shoots and roots
D27	None	LOC_Os11g37650	root	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	In addition, 2'-epi-5-deoxystrigol, an identified strigolactone in root exudates of rice seedlings, was undetectable in d27, and the phenotypes of d27 could be rescued by supplementation with GR24, a synthetic strigolactone analog
D27	None	LOC_Os11g37650	tillering	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D27	None	LOC_Os11g37650	shoot	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	D27 encodes a novel iron-containing protein that localizes in chloroplasts and is expressed mainly in vascular cells of shoots and roots
D27	None	LOC_Os11g37650	dwarf	The Arabidopsis ortholog of rice DWARF27 acts upstream of MAX1 in the control of plant development by strigolactones	In rice (Oryza sativa), the plastid-localized protein DWARF27 (OsD27) is also necessary for SL biosynthesis, but the equivalent gene in Arabidopsis has not been identified
D27	None	LOC_Os11g37650	iron	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	D27 encodes a novel iron-containing protein that localizes in chloroplasts and is expressed mainly in vascular cells of shoots and roots
D27	None	LOC_Os11g37650	seedling	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	In addition, 2'-epi-5-deoxystrigol, an identified strigolactone in root exudates of rice seedlings, was undetectable in d27, and the phenotypes of d27 could be rescued by supplementation with GR24, a synthetic strigolactone analog
D27	None	LOC_Os11g37650	dwarf	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D27	None	LOC_Os11g37650	tiller	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D27	None	LOC_Os11g37650	growth	The Arabidopsis ortholog of rice DWARF27 acts upstream of MAX1 in the control of plant development by strigolactones	Using reverse genetics, we show that AtD27 is required for the inhibition of secondary bud outgrowth and that exogenous application of the synthetic SL GR24 can rescue the increased branching phenotype of an Atd27 mutant
D27	None	LOC_Os11g37650	chloroplast	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	D27 encodes a novel iron-containing protein that localizes in chloroplasts and is expressed mainly in vascular cells of shoots and roots
D27	None	LOC_Os11g37650	branching	The Arabidopsis ortholog of rice DWARF27 acts upstream of MAX1 in the control of plant development by strigolactones	Using reverse genetics, we show that AtD27 is required for the inhibition of secondary bud outgrowth and that exogenous application of the synthetic SL GR24 can rescue the increased branching phenotype of an Atd27 mutant
D27	None	LOC_Os11g37650	auxin	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	The phenotype of d27 is correlated with enhanced polar auxin transport
D27	None	LOC_Os11g37650	tiller	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	We report here the molecular genetic characterization of d27, a classic rice mutant exhibiting increased tillers and reduced plant height
D27	None	LOC_Os11g37650	branching	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D27	None	LOC_Os11g37650	height	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth	We report here the molecular genetic characterization of d27, a classic rice mutant exhibiting increased tillers and reduced plant height
D27	None	LOC_Os11g37650	strigolactone	Biochemical Characterisation &amp; Selective Inhibition of β-Carotene cis-trans-Isomerase D27 and Carotenoid Cleavage Dioxygenase CCD8 on the Strigolactone Biosynthetic Pathway.	Biochemical Characterisation &amp; Selective Inhibition of β-Carotene cis-trans-Isomerase D27 and Carotenoid Cleavage Dioxygenase CCD8 on the Strigolactone Biosynthetic Pathway.
D3	Os06g0154200	LOC_Os06g06050	dwarf	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	The D53 gene product shares predicted features with the class I Clp ATPase proteins and can form a complex with the alpha/beta hydrolase protein DWARF 14 (D14) and the F-box protein DWARF 3 (D3), two previously identified signalling components potentially responsible for SL perception
D3	Os06g0154200	LOC_Os06g06050	leaf	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	We found that darkness-induced senescence or H2O2-induced cell death in the third leaf [as measured by chlorophyll degradation, membrane ion leakage and expression of senescence-associated genes (SAGs)] in a d3 rice mutant was delayed by 1~3 d compared to that in its reference line Shiokari
D3	Os06g0154200	LOC_Os06g06050	leaf	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	These results suggest that D3 protein in rice, like MAX2/ORE9 in Arabidopsis, is involved in leaf senescence or cell death
D3	Os06g0154200	LOC_Os06g06050	resistant	DWARF 53 acts as a repressor of strigolactone signalling in rice	Treatments with GR24, a synthetic SL analogue, cause D53 degradation via the proteasome in a manner that requires D14 and the SCF(D3) ubiquitin ligase, whereas the dominant form of D53 is resistant to SL-mediated degradation
D3	Os06g0154200	LOC_Os06g06050	tillering	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
D3	Os06g0154200	LOC_Os06g06050	tillering	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	The reduction in tillering by the rcn1 mutation was independent of the d3 genotype, and tillering number of d3rcn1 double mutant was between those of the d3 and rcn1 mutants
D3	Os06g0154200	LOC_Os06g06050	tillering	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	These results demonstrated that the Rcn1 gene was not involved in the D3-associated pathway in tillering control
D3	Os06g0154200	LOC_Os06g06050	tillering	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice
D3	Os06g0154200	LOC_Os06g06050	dwarf	DWARF 53 acts as a repressor of strigolactone signalling in rice	SL signalling requires the hormone-dependent interaction of DWARF 14 (D14), a probable candidate SL receptor, with DWARF 3 (D3), an F-box component of the Skp-Cullin-F-box (SCF) E3 ubiquitin ligase complex
D3	Os06g0154200	LOC_Os06g06050	dwarf	DWARF 53 acts as a repressor of strigolactone signalling in rice	Here we report the characterization of a dominant SL-insensitive rice (Oryza sativa) mutant dwarf 53 (d53) and the cloning of D53, which encodes a substrate of the SCF(D3) ubiquitination complex and functions as a repressor of SL signalling
D3	Os06g0154200	LOC_Os06g06050	tiller number	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
D3	Os06g0154200	LOC_Os06g06050	tiller number	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	The d3 mutant was reported to increase tiller number and reduce plant stature
D3	Os06g0154200	LOC_Os06g06050	dwarf	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
D3	Os06g0154200	LOC_Os06g06050	dwarf	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice
D3	Os06g0154200	LOC_Os06g06050	dwarf	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D3	Os06g0154200	LOC_Os06g06050	culm	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
D3	Os06g0154200	LOC_Os06g06050	culm	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice
D3	Os06g0154200	LOC_Os06g06050	tillering	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D3	Os06g0154200	LOC_Os06g06050	dwarf	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	) gene DWARF3 (D3) is orthologous to MAX2/ORE9, we wished to know whether disruption of D3 also results in increased longevity in leaves
D3	Os06g0154200	LOC_Os06g06050	cell death	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	We found that darkness-induced senescence or H2O2-induced cell death in the third leaf [as measured by chlorophyll degradation, membrane ion leakage and expression of senescence-associated genes (SAGs)] in a d3 rice mutant was delayed by 1~3 d compared to that in its reference line Shiokari
D3	Os06g0154200	LOC_Os06g06050	cell death	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	Moreover, the mRNA levels of D3, HTD1 and D10, which are orthologs of Arabidopsis MAX2/ORE9, MAX3 and MAX4, respectively, increased during cell death
D3	Os06g0154200	LOC_Os06g06050	cell death	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	These results suggest that D3 protein in rice, like MAX2/ORE9 in Arabidopsis, is involved in leaf senescence or cell death
D3	Os06g0154200	LOC_Os06g06050	strigolactone	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	Loss of function of HTD2 resulted in a significantly increased expression of HTD1, D10 and D3, which were involved in the strigolactone biosynthetic pathway
D3	Os06g0154200	LOC_Os06g06050	growth	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	We demonstrate that, in a D14- and D3-dependent manner, SLs induce D53 degradation by the proteasome and abrogate its activity in promoting axillary bud outgrowth
D3	Os06g0154200	LOC_Os06g06050	strigolactone	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling
D3	Os06g0154200	LOC_Os06g06050	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
D3	Os06g0154200	LOC_Os06g06050	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	The d3 mutant was reported to increase tiller number and reduce plant stature
D3	Os06g0154200	LOC_Os06g06050	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	The reduction in tillering by the rcn1 mutation was independent of the d3 genotype, and tillering number of d3rcn1 double mutant was between those of the d3 and rcn1 mutants
D3	Os06g0154200	LOC_Os06g06050	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	These results demonstrated that the Rcn1 gene was not involved in the D3-associated pathway in tillering control
D3	Os06g0154200	LOC_Os06g06050	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice
D3	Os06g0154200	LOC_Os06g06050	senescence	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	We found that darkness-induced senescence or H2O2-induced cell death in the third leaf [as measured by chlorophyll degradation, membrane ion leakage and expression of senescence-associated genes (SAGs)] in a d3 rice mutant was delayed by 1~3 d compared to that in its reference line Shiokari
D3	Os06g0154200	LOC_Os06g06050	senescence	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	These results suggest that D3 protein in rice, like MAX2/ORE9 in Arabidopsis, is involved in leaf senescence or cell death
D3	Os06g0154200	LOC_Os06g06050	branching	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D3	Os06g0154200	LOC_Os06g06050	tiller	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
D3	Os06g0154200	LOC_Os06g06050	gibberellin	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Knockout of D3 gene (d3 mutants) or miR528-overexpressing (OE-miR528) triggers a substantial reduction of gibberellin (GA) content, but a significant increase of abscisic acid (ABA) accumulation than in WT
D3	Os06g0154200	LOC_Os06g06050	ABA	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 The d3 and OE-miR528 transgenic plants were much more sensitive to GA, but less sensitive to ABA than WT
D3	Os06g0154200	LOC_Os06g06050	ABA	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Moreover, the expression level of GA biosynthesis-related key genes, including OsCPS1, OsCPS2, OsKO2 and OsKAO was remarkably higher in OE-D3 plants, while the NECD2 expression, a key gene involved in ABA biosynthesis, was significantly higher in d3 mutants than in WT and OE-D3 plants
D3	Os06g0154200	LOC_Os06g06050	ga	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Moreover, the expression level of GA biosynthesis-related key genes, including OsCPS1, OsCPS2, OsKO2 and OsKAO was remarkably higher in OE-D3 plants, while the NECD2 expression, a key gene involved in ABA biosynthesis, was significantly higher in d3 mutants than in WT and OE-D3 plants
D3	Os06g0154200	LOC_Os06g06050	abscisic acid	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Knockout of D3 gene (d3 mutants) or miR528-overexpressing (OE-miR528) triggers a substantial reduction of gibberellin (GA) content, but a significant increase of abscisic acid (ABA) accumulation than in WT
D3	Os06g0154200	LOC_Os06g06050	plant height	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 However, it remains unknown whether the miR528 and D3 interaction functions in controlling plant height, and the underlying regulatory mechanism in rice
D3	Os06g0154200	LOC_Os06g06050	plant height	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 In this study, we found that the plant height, internode length, and cell length of internodes of d3 mutants and miR528-overexpressing (OE-miR528) lines were greatly shorter than WT, D3-overexpressing (OE-D3), and miR528 target mimicry (OE-MIM528) transgenic plants
D3	Os06g0154200	LOC_Os06g06050	Gibberellin	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Knockout of D3 gene (d3 mutants) or miR528-overexpressing (OE-miR528) triggers a substantial reduction of gibberellin (GA) content, but a significant increase of abscisic acid (ABA) accumulation than in WT
D3	Os06g0154200	LOC_Os06g06050	GA	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Moreover, the expression level of GA biosynthesis-related key genes, including OsCPS1, OsCPS2, OsKO2 and OsKAO was remarkably higher in OE-D3 plants, while the NECD2 expression, a key gene involved in ABA biosynthesis, was significantly higher in d3 mutants than in WT and OE-D3 plants
D3	Os06g0154200	LOC_Os06g06050	internode length	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 In this study, we found that the plant height, internode length, and cell length of internodes of d3 mutants and miR528-overexpressing (OE-miR528) lines were greatly shorter than WT, D3-overexpressing (OE-D3), and miR528 target mimicry (OE-MIM528) transgenic plants
D3	Os06g0154200	LOC_Os06g06050	 ga 	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Moreover, the expression level of GA biosynthesis-related key genes, including OsCPS1, OsCPS2, OsKO2 and OsKAO was remarkably higher in OE-D3 plants, while the NECD2 expression, a key gene involved in ABA biosynthesis, was significantly higher in d3 mutants than in WT and OE-D3 plants
D3	Os06g0154200	LOC_Os06g06050	GA biosynthesis	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Moreover, the expression level of GA biosynthesis-related key genes, including OsCPS1, OsCPS2, OsKO2 and OsKAO was remarkably higher in OE-D3 plants, while the NECD2 expression, a key gene involved in ABA biosynthesis, was significantly higher in d3 mutants than in WT and OE-D3 plants
D3	Os06g0154200	LOC_Os06g06050	 ABA 	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 The d3 and OE-miR528 transgenic plants were much more sensitive to GA, but less sensitive to ABA than WT
D3	Os06g0154200	LOC_Os06g06050	 ABA 	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Moreover, the expression level of GA biosynthesis-related key genes, including OsCPS1, OsCPS2, OsKO2 and OsKAO was remarkably higher in OE-D3 plants, while the NECD2 expression, a key gene involved in ABA biosynthesis, was significantly higher in d3 mutants than in WT and OE-D3 plants
D3	Os06g0154200	LOC_Os06g06050	ABA biosynthesis	The miR528-D3 Module Regulates Plant Height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	 Moreover, the expression level of GA biosynthesis-related key genes, including OsCPS1, OsCPS2, OsKO2 and OsKAO was remarkably higher in OE-D3 plants, while the NECD2 expression, a key gene involved in ABA biosynthesis, was significantly higher in d3 mutants than in WT and OE-D3 plants
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	dwarf	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	) semi-dwarf cultivar, Tan-Ginbozu (d35Tan-Ginbozu), contributed to the increase in crop productivity in Japan in the 1950s
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	dwarf	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Previous studies suggested that the semi-dwarf stature of d35Tan-Ginbozu is caused by a defective early step of gibberellin biosynthesis, which is catalyzed by ent-kaurene oxidase (KO)
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	dwarf	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Homozygote with null alleles of D35 showed a severe dwarf phenotype; therefore, d35Tan-Ginbozu is a weak allele of D35
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	dwarf	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Introduction of OsKOL4 into d35Tan-Ginbozu did not rescue its dwarf phenotype, indicating that OsKOL4 is not involved in GA biosynthesis
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	dwarf	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	gibberellin	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Previous studies suggested that the semi-dwarf stature of d35Tan-Ginbozu is caused by a defective early step of gibberellin biosynthesis, which is catalyzed by ent-kaurene oxidase (KO)
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	gibberellin	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	architecture	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Comparing d35Tan-Ginbozu with other high yielding cultivars, we discuss strategies to produce culm architectures suitable for high crop yield by decreasing GA levels
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	culm	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Comparing d35Tan-Ginbozu with other high yielding cultivars, we discuss strategies to produce culm architectures suitable for high crop yield by decreasing GA levels
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	ga	CYP701A8: a rice ent-kaurene oxidase paralog diverted to more specialized diterpenoid metabolism	Rice (Oryza sativa) contains five CYP701A subfamily members in its genome, despite the fact that only one (OsKO2/CYP701A6) is required for GA biosynthesis
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	ga	CYP701A8: a rice ent-kaurene oxidase paralog diverted to more specialized diterpenoid metabolism	In particular, under conditions where OsKO2 catalyzes the expected conversion of ent-kaurene to ent-kaurenoic acid required for GA biosynthesis, OsKOL4 instead efficiently reacts with ent-sandaracopimaradiene and ent-cassadiene to produce the corresponding C3alpha-hydroxylated diterpenoids
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	yield	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Comparing d35Tan-Ginbozu with other high yielding cultivars, we discuss strategies to produce culm architectures suitable for high crop yield by decreasing GA levels
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	ga	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Introduction of OsKOL4 into d35Tan-Ginbozu did not rescue its dwarf phenotype, indicating that OsKOL4 is not involved in GA biosynthesis
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	ga	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Comparing d35Tan-Ginbozu with other high yielding cultivars, we discuss strategies to produce culm architectures suitable for high crop yield by decreasing GA levels
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	gibberellin	Functional Identification of a Riceent-Kaurene Oxidase, OsKO2, Using thePichia pastorisExpression System	Rice ent-kaurene oxidase 2 (OsKO2) perhaps functions in the early steps of gibberellin biosynthesis
D35|OsKOS3|OsKO2	Os06g0570100	LOC_Os06g37364	gibberellin	Functional Identification of a Riceent-Kaurene Oxidase, OsKO2, Using thePichia pastorisExpression System	This is direct evidence that OsKO2 is involved in the sequential oxidation of ent-kaurene to ent-kaurenoic acid in gibberellin biosynthesis in rice
D50	Os02g0477700	LOC_Os02g27620	cell wall	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	Previously, we reported that parenchyma cells in the elongated internodes of d50 ectopically deposit cell wall phenolics
D50	Os02g0477700	LOC_Os02g27620	cell wall	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	The d50 mutation induced abnormally oriented cell division, irregular deposition of cell wall pectins and thick actin bundles in the parenchyma cells of the IM, resulting in abnormally organized cell files of the internode parenchyma and dwarf phenotype
D50	Os02g0477700	LOC_Os02g27620	cell wall	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	Our results suggest that the putative 5PTase, encoded by D50, is essential for IM formation, including the direction of cell division, deposition of cell wall pectins and control of actin organization
D50	Os02g0477700	LOC_Os02g27620	dwarf	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	To understand the regulation of internode development, we analysed a rice dwarf mutant, dwarf 50 (d50)
D50	Os02g0477700	LOC_Os02g27620	dwarf	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	The d50 mutation induced abnormally oriented cell division, irregular deposition of cell wall pectins and thick actin bundles in the parenchyma cells of the IM, resulting in abnormally organized cell files of the internode parenchyma and dwarf phenotype
D50	Os02g0477700	LOC_Os02g27620	dwarf	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem
D50	Os02g0477700	LOC_Os02g27620	intercalary meristem	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem
D50	Os02g0477700	LOC_Os02g27620	cell division	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	The d50 mutation induced abnormally oriented cell division, irregular deposition of cell wall pectins and thick actin bundles in the parenchyma cells of the IM, resulting in abnormally organized cell files of the internode parenchyma and dwarf phenotype
D50	Os02g0477700	LOC_Os02g27620	cell division	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	Our results suggest that the putative 5PTase, encoded by D50, is essential for IM formation, including the direction of cell division, deposition of cell wall pectins and control of actin organization
D50	Os02g0477700	LOC_Os02g27620	meristem	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem	DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	strigolactone	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	growth	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	We demonstrate that, in a D14- and D3-dependent manner, SLs induce D53 degradation by the proteasome and abrogate its activity in promoting axillary bud outgrowth
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	dwarf	DWARF 53 acts as a repressor of strigolactone signalling in rice	Here we report the characterization of a dominant SL-insensitive rice (Oryza sativa) mutant dwarf 53 (d53) and the cloning of D53, which encodes a substrate of the SCF(D3) ubiquitination complex and functions as a repressor of SL signalling
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	dwarf	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	Here we show that DWARF 53 (D53) acts as a repressor of SL signalling and that SLs induce its degradation
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	dwarf	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	The D53 gene product shares predicted features with the class I Clp ATPase proteins and can form a complex with the alpha/beta hydrolase protein DWARF 14 (D14) and the F-box protein DWARF 3 (D3), two previously identified signalling components potentially responsible for SL perception
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	tiller	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	We find that the rice (Oryza sativa) d53 mutant, which produces an exaggerated number of tillers compared to wild-type plants, is caused by a gain-of-function mutation and is insensitive to exogenous SL treatment
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	resistant	DWARF 53 acts as a repressor of strigolactone signalling in rice	Treatments with GR24, a synthetic SL analogue, cause D53 degradation via the proteasome in a manner that requires D14 and the SCF(D3) ubiquitin ligase, whereas the dominant form of D53 is resistant to SL-mediated degradation
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	tillering	Sucrose promotes D53 accumulation and tillering in rice.	Sucrose promotes D53 accumulation and tillering in rice.
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	tillering	Sucrose promotes D53 accumulation and tillering in rice.	 Overexpression of D3 antagonizes sucrose inhibition of D53 degradation and enables the SL inhibition of tillering under high sucrose
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	sucrose	Sucrose promotes D53 accumulation and tillering in rice.	Sucrose promotes D53 accumulation and tillering in rice.
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	sucrose	Sucrose promotes D53 accumulation and tillering in rice.	 Overexpression of D3 antagonizes sucrose inhibition of D53 degradation and enables the SL inhibition of tillering under high sucrose
D53	Os11g0104300|Os11g0104350	LOC_Os11g01330	sucrose	Sucrose promotes D53 accumulation and tillering in rice.	 Sucrose prevents SL-induced degradation of D14, the SL receptor involved in D53 degradation
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	vegetative	Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis	Whereas Oskn3 transformants showed the most pronounced phenotypic effects during vegetative development, Oskn2 transformants showed relatively mild alterations in the vegetative phase but a more severely affected flower morphology
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	vegetative	SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice	Overexpression of SUI1 and SUI2 caused outgrowths of internodes during vegetative development, and we showed that expression patterns of Oryza Sativa Homeobox 15 (OSH15) and Histone4 were impaired
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shoot	KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice	We produced transgenic rice calli, which constitutively express each of four KNOX family class 1 homeobox genes of rice, OSH1, OSH16, OSH15, and OSH71, and found that constitutive and ectopic expression of such genes inhibits normal regeneration from transformed calli, which showed continuous growth around their shoot-regenerating stages
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	meristem	Isolation and characterization of a rice homebox gene, OSH15	Whereas the expression of OSH1 continued within the shoot apical meristem, OSH15 expression within the shoot apical meristem ceased but became observable in a ring shaped pattern at the boundaries of some embryonic organs
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	meristem	Isolation and characterization of a rice homebox gene, OSH15	RNA in situ localization data suggest that OSH15 may play roles in the shoot organization during early embryogenesis and thereafter, OSH15 may be involved in morphogenetic events around the shoot apical meristem
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	dwarf	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	panicle	Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice	Ectopic expression of Oskn2 or Oskn3 induced similar defects in panicle branching
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shoot apical meristem	Isolation and characterization of a rice homebox gene, OSH15	Whereas the expression of OSH1 continued within the shoot apical meristem, OSH15 expression within the shoot apical meristem ceased but became observable in a ring shaped pattern at the boundaries of some embryonic organs
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shoot apical meristem	Isolation and characterization of a rice homebox gene, OSH15	RNA in situ localization data suggest that OSH15 may play roles in the shoot organization during early embryogenesis and thereafter, OSH15 may be involved in morphogenetic events around the shoot apical meristem
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shoot	Isolation and characterization of a rice homebox gene, OSH15	Whereas the expression of OSH1 continued within the shoot apical meristem, OSH15 expression within the shoot apical meristem ceased but became observable in a ring shaped pattern at the boundaries of some embryonic organs
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shoot	Isolation and characterization of a rice homebox gene, OSH15	RNA in situ localization data suggest that OSH15 may play roles in the shoot organization during early embryogenesis and thereafter, OSH15 may be involved in morphogenetic events around the shoot apical meristem
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	growth	SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice	Overexpression of SUI1 and SUI2 caused outgrowths of internodes during vegetative development, and we showed that expression patterns of Oryza Sativa Homeobox 15 (OSH15) and Histone4 were impaired
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	branching	Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice	Ectopic expression of Oskn2 or Oskn3 induced similar defects in panicle branching
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	growth	KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice	We produced transgenic rice calli, which constitutively express each of four KNOX family class 1 homeobox genes of rice, OSH1, OSH16, OSH15, and OSH71, and found that constitutive and ectopic expression of such genes inhibits normal regeneration from transformed calli, which showed continuous growth around their shoot-regenerating stages
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	architecture	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	flower	Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis	Whereas Oskn3 transformants showed the most pronounced phenotypic effects during vegetative development, Oskn2 transformants showed relatively mild alterations in the vegetative phase but a more severely affected flower morphology
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	spikelet	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 In transgenic plants carrying the OSH15 promoter-GUS reporter construct, the reporter gene was preferentially expressed in the AZ during young spikelet development
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	spikelet	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 The RNA in situ hybridization experiment also showed that OSH15 mRNAs were abundant in the AZ during spikelet development
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	grain	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	development	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 In transgenic plants carrying the OSH15 promoter-GUS reporter construct, the reporter gene was preferentially expressed in the AZ during young spikelet development
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	development	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 The RNA in situ hybridization experiment also showed that OSH15 mRNAs were abundant in the AZ during spikelet development
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	seed	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 Knockdown mutations of OSH15 showed reduced seed shattering phenotypes
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	seed	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 Analyses of osh15 SH5-D double mutants showed that SH5 could not increase the degree of seed shattering when OSH15 was absent, indicating that SH5 functions together with OSH15
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	seed	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 In addition to the seed shattering phenotype, osh15 mutants displayed dwarfism and accumulated a higher amount of lignin in internodes due to increased expression of the genes involved in lignin biosynthesis
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	seed	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 We conclude that OSH15 and SH5 form a dimer that enhances seed shattering by directly inhibiting lignin biosynthesis genes
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	lignin	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	lignin	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 In addition to the seed shattering phenotype, osh15 mutants displayed dwarfism and accumulated a higher amount of lignin in internodes due to increased expression of the genes involved in lignin biosynthesis
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	lignin	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 We conclude that OSH15 and SH5 form a dimer that enhances seed shattering by directly inhibiting lignin biosynthesis genes
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shattering	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shattering	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 Knockdown mutations of OSH15 showed reduced seed shattering phenotypes
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shattering	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 Analyses of osh15 SH5-D double mutants showed that SH5 could not increase the degree of seed shattering when OSH15 was absent, indicating that SH5 functions together with OSH15
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shattering	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 In addition to the seed shattering phenotype, osh15 mutants displayed dwarfism and accumulated a higher amount of lignin in internodes due to increased expression of the genes involved in lignin biosynthesis
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shattering	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 We conclude that OSH15 and SH5 form a dimer that enhances seed shattering by directly inhibiting lignin biosynthesis genes
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	seed shattering	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 Knockdown mutations of OSH15 showed reduced seed shattering phenotypes
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	seed shattering	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 Analyses of osh15 SH5-D double mutants showed that SH5 could not increase the degree of seed shattering when OSH15 was absent, indicating that SH5 functions together with OSH15
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	seed shattering	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 In addition to the seed shattering phenotype, osh15 mutants displayed dwarfism and accumulated a higher amount of lignin in internodes due to increased expression of the genes involved in lignin biosynthesis
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	seed shattering	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 We conclude that OSH15 and SH5 form a dimer that enhances seed shattering by directly inhibiting lignin biosynthesis genes
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	lignin biosynthesis	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	lignin biosynthesis	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 In addition to the seed shattering phenotype, osh15 mutants displayed dwarfism and accumulated a higher amount of lignin in internodes due to increased expression of the genes involved in lignin biosynthesis
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	lignin biosynthesis	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 We conclude that OSH15 and SH5 form a dimer that enhances seed shattering by directly inhibiting lignin biosynthesis genes
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	spikelet development	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 In transgenic plants carrying the OSH15 promoter-GUS reporter construct, the reporter gene was preferentially expressed in the AZ during young spikelet development
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	spikelet development	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	 The RNA in situ hybridization experiment also showed that OSH15 mRNAs were abundant in the AZ during spikelet development
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	shoot	RLB (RICE LATERAL BRANCH) recruits PRC2-mediated H3K27 tri-methylation on OsCKX4 to regulate lateral branching.	 Here, we report the map-based cloning of RLB (RICE LATERAL BRANCH) encoding a nuclear-localized, KNOX-type homeobox protein from a rice cytokinin-deficient mutant showing more tillers, sparser panicles, defected floret morphology as well as attenuated shoot regeneration from callus
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	panicle	RLB (RICE LATERAL BRANCH) recruits PRC2-mediated H3K27 tri-methylation on OsCKX4 to regulate lateral branching.	 RLB directly binds to the promoter and represses the transcription of OsCKX4, a cytokinin oxidase gene with high abundance in panicle branch meristem
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	map-based cloning	RLB (RICE LATERAL BRANCH) recruits PRC2-mediated H3K27 tri-methylation on OsCKX4 to regulate lateral branching.	 Here, we report the map-based cloning of RLB (RICE LATERAL BRANCH) encoding a nuclear-localized, KNOX-type homeobox protein from a rice cytokinin-deficient mutant showing more tillers, sparser panicles, defected floret morphology as well as attenuated shoot regeneration from callus
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	cytokinin	RLB (RICE LATERAL BRANCH) recruits PRC2-mediated H3K27 tri-methylation on OsCKX4 to regulate lateral branching.	 RLB directly binds to the promoter and represses the transcription of OsCKX4, a cytokinin oxidase gene with high abundance in panicle branch meristem
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	meristem	RLB (RICE LATERAL BRANCH) recruits PRC2-mediated H3K27 tri-methylation on OsCKX4 to regulate lateral branching.	 RLB directly binds to the promoter and represses the transcription of OsCKX4, a cytokinin oxidase gene with high abundance in panicle branch meristem
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	branching	RLB (RICE LATERAL BRANCH) recruits PRC2-mediated H3K27 tri-methylation on OsCKX4 to regulate lateral branching.	 We proposed that RLB recruits PRC2 to the OsCKX4 promoter to epigenetically repress its transcription, which suppresses the catabolism of cytokinin, thereby promoting rice lateral branching
D6|OSH15|Oskn3|RLB	Os07g0129700	LOC_Os07g03770	callus	RLB (RICE LATERAL BRANCH) recruits PRC2-mediated H3K27 tri-methylation on OsCKX4 to regulate lateral branching.	 Here, we report the map-based cloning of RLB (RICE LATERAL BRANCH) encoding a nuclear-localized, KNOX-type homeobox protein from a rice cytokinin-deficient mutant showing more tillers, sparser panicles, defected floret morphology as well as attenuated shoot regeneration from callus
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	growth	Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint	Our results show that OsBRI1 functions in various growth and developmental processes in rice, including (1) internode elongation, by inducing the formation of the intercalary meristem and the longitudinal elongation of internode cells; (2) bending of the lamina joint; and (3) skotomorphogenesis
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain size	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	However, the small grain size of d61-7 counters any increase in grain yield, leading to the same grain yield as that of wild type even at high density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	dwarf	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	The rice (Oryza sativa) dwarf mutant d61 phenotype is caused by loss of function of a rice BRASSINOSTEROID INSENSITIVE1 ortholog, OsBRI1
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	dwarf	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	We have identified nine d61 alleles, the weakest of which, d61-7, confers agronomically important traits such as semidwarf stature and erect leaves
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	dwarf	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	The biomass of wild type was 38% higher than that of d61-7 at harvest under conventional planting density because of the dwarfism of d61-7
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	We therefore produced transgenic rice with partial suppression of endogenous OsBRI1 expression to obtain the erect-leaf phenotype without grain changes
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	erect	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	We have identified nine d61 alleles, the weakest of which, d61-7, confers agronomically important traits such as semidwarf stature and erect leaves
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	erect	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	Because erect-leaf habit is considered to increase light capture for photosynthesis, we compared the biomass and grain production of wild-type and d61-7 rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	dwarf	Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint	We report here the phenotypical and molecular characterization of a rice dwarf mutant, d61, that is less sensitive to BR compared to the wild type
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	lamina	Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint	Our results show that OsBRI1 functions in various growth and developmental processes in rice, including (1) internode elongation, by inducing the formation of the intercalary meristem and the longitudinal elongation of internode cells; (2) bending of the lamina joint; and (3) skotomorphogenesis
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	dwarf	Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development	Through map-based cloning, Fn189 was found to be a novel allelic mutant of the DWARF 61 (D61) gene, which encodes the putative BRs receptor OsBRI1
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	leaf	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	Because erect-leaf habit is considered to increase light capture for photosynthesis, we compared the biomass and grain production of wild-type and d61-7 rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development	Taken together, the kinase activity of OsBRI1 is essential for brassinosteroids to regulate normal plant growth and development in rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development	Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	shoot	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	In contrast to its severe shoot phenotype, the d61-4 mutant had a mild root phenotype
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	shoot	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	The homologous genes for OsBRI1, OsBRL1 and OsBRL3, were highly expressed in roots but weakly expressed in shoots, and their expression was higher in d61-4 than in the wild type
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	cell division	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	Based on these observations, we conclude that OsBRI1 is not essential for pattern formation or organ initiation, but is involved in organ development through controlling cell division and elongation
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	growth	Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development	Taken together, the kinase activity of OsBRI1 is essential for brassinosteroids to regulate normal plant growth and development in rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	growth	Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development	Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	dwarf	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	The most severe mutant, d61-4, exhibited severe dwarfism and twisted leaves, although pattern formation and differentiation were normal
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	RPL1, a gene involved in epigenetic processes regulates phenotypic plasticity in rice	Analysis of the putative rice brassinosteroid receptor OsBRI1, a key hormone signaling gene, indicated that RPL1 may be involved in the regulation of epigenomic modification of the gene
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	leaf	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	We therefore produced transgenic rice with partial suppression of endogenous OsBRI1 expression to obtain the erect-leaf phenotype without grain changes
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	Because erect-leaf habit is considered to increase light capture for photosynthesis, we compared the biomass and grain production of wild-type and d61-7 rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	The grain yield of wild type reached a maximum at middensity, but the yield of d61-7 continued to increase with planting density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	However, the small grain size of d61-7 counters any increase in grain yield, leading to the same grain yield as that of wild type even at high density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	photosynthesis	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	Because erect-leaf habit is considered to increase light capture for photosynthesis, we compared the biomass and grain production of wild-type and d61-7 rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	Since first identifying two alleles of a rice (Oryza sativa) brassinosteroid (BR)-insensitive mutant, d61, that were also defective in an orthologous gene in Arabidopsis (Arabidopsis thaliana) BRASSINOSTEROID INSENSITIVE1 (BRI1), we have isolated eight additional alleles, including null mutations, of the rice BRI1 gene OsBRI1
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	seed	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice	Mutants defective in the G-protein alpha subunit (d1-1) and brassinosteroid receptor, BRI1 (d61-2) also exhibited short seed phenotypes, the former due to impaired cell numbers and the latter due to impaired cell length
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	seed	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice	Seeds of the double mutant of Srs5 and d61-2 were smaller than those of Srs5 or d61-2
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	 BR 	Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint	We cloned a rice gene, OsBRI1, with extensive sequence similarity to that of the Arabidopsis BRI gene, which encodes a putative BR receptor kinase
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	lamina	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 protein is a positive regulator of BR response: it controls bending of the lamina joint in rice and it is a novel primary response gene that participates in two BR signaling pathways through OsBRI1 and RGA1
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	intercalary meristem	Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint	Our results show that OsBRI1 functions in various growth and developmental processes in rice, including (1) internode elongation, by inducing the formation of the intercalary meristem and the longitudinal elongation of internode cells; (2) bending of the lamina joint; and (3) skotomorphogenesis
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	root	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	The homologous genes for OsBRI1, OsBRL1 and OsBRL3, were highly expressed in roots but weakly expressed in shoots, and their expression was higher in d61-4 than in the wild type
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	root	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	In contrast to its severe shoot phenotype, the d61-4 mutant had a mild root phenotype
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	The rice (Oryza sativa) dwarf mutant d61 phenotype is caused by loss of function of a rice BRASSINOSTEROID INSENSITIVE1 ortholog, OsBRI1
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice	Mutants defective in the G-protein alpha subunit (d1-1) and brassinosteroid receptor, BRI1 (d61-2) also exhibited short seed phenotypes, the former due to impaired cell numbers and the latter due to impaired cell length
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	In addition, compared to the wild type, the induction of BU1 by exogenous brassinolide did not require de novo protein synthesis and it was weaker in a BR receptor mutant OsbriI (Oryza sativa brassinosteroid insensitive1, d61) and a rice G protein alpha subunit (RGA1) mutant d1
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	meristem	Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint	Our results show that OsBRI1 functions in various growth and developmental processes in rice, including (1) internode elongation, by inducing the formation of the intercalary meristem and the longitudinal elongation of internode cells; (2) bending of the lamina joint; and (3) skotomorphogenesis
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	yield	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	The grain yield of wild type reached a maximum at middensity, but the yield of d61-7 continued to increase with planting density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	yield	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	However, the small grain size of d61-7 counters any increase in grain yield, leading to the same grain yield as that of wild type even at high density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	 BR 	Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint	We report here the phenotypical and molecular characterization of a rice dwarf mutant, d61, that is less sensitive to BR compared to the wild type
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	 BR 	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	In addition, compared to the wild type, the induction of BU1 by exogenous brassinolide did not require de novo protein synthesis and it was weaker in a BR receptor mutant OsbriI (Oryza sativa brassinosteroid insensitive1, d61) and a rice G protein alpha subunit (RGA1) mutant d1
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	reproductive	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	These results indicate that d61-7 produces biomass more effectively than wild type, and consequently more effectively assimilates the biomass in reproductive organ development at high planting density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	erect	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	We therefore produced transgenic rice with partial suppression of endogenous OsBRI1 expression to obtain the erect-leaf phenotype without grain changes
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	 BR 	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 protein is a positive regulator of BR response: it controls bending of the lamina joint in rice and it is a novel primary response gene that participates in two BR signaling pathways through OsBRI1 and RGA1
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	BR signaling	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice	These results indicate that BU1 protein is a positive regulator of BR response: it controls bending of the lamina joint in rice and it is a novel primary response gene that participates in two BR signaling pathways through OsBRI1 and RGA1
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain yield	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	The grain yield of wild type reached a maximum at middensity, but the yield of d61-7 continued to increase with planting density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain yield	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	However, the small grain size of d61-7 counters any increase in grain yield, leading to the same grain yield as that of wild type even at high density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	biomass	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	Because erect-leaf habit is considered to increase light capture for photosynthesis, we compared the biomass and grain production of wild-type and d61-7 rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	biomass	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	The biomass of wild type was 38% higher than that of d61-7 at harvest under conventional planting density because of the dwarfism of d61-7
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	biomass	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	However, the biomass of d61-7 was 35% higher than that of wild type at high planting density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	biomass	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice	These results indicate that d61-7 produces biomass more effectively than wild type, and consequently more effectively assimilates the biomass in reproductive organ development at high planting density
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	panicle	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 Among the SNDH populations, the analysis of the relative expression level during the panicle formation stage of OsBRKq1 in panicles of SNDH117, which has the largest grain size, and SNDH6, which has the smallest grain size, the relative expression level was significantly increased in SNDH117 panicles
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 Grain sizes were diversely distributed in SNDH 113 populations, and OsBRKq1 was detected on chromosome 1 in an analysis of QTL mapping that used 1000 grain weight, grain length, and grain width
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 Among the SNDH populations, the analysis of the relative expression level during the panicle formation stage of OsBRKq1 in panicles of SNDH117, which has the largest grain size, and SNDH6, which has the smallest grain size, the relative expression level was significantly increased in SNDH117 panicles
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain length	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 Grain sizes were diversely distributed in SNDH 113 populations, and OsBRKq1 was detected on chromosome 1 in an analysis of QTL mapping that used 1000 grain weight, grain length, and grain width
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	yield	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 In the future, OsBRKq1 can be effectively used to increase the yield of rice and solve food problems by increasing the size of seeds
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain size	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 Grain sizes were diversely distributed in SNDH 113 populations, and OsBRKq1 was detected on chromosome 1 in an analysis of QTL mapping that used 1000 grain weight, grain length, and grain width
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain size	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 Among the SNDH populations, the analysis of the relative expression level during the panicle formation stage of OsBRKq1 in panicles of SNDH117, which has the largest grain size, and SNDH6, which has the smallest grain size, the relative expression level was significantly increased in SNDH117 panicles
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 OsBRKq1 exhibited high sequence similarity with the brassinosteroid leucine-rich repeat-receptor kinases of Arabidopsis thaliana and Zea mays
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	Brassinosteroid	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 OsBRKq1 exhibited high sequence similarity with the brassinosteroid leucine-rich repeat-receptor kinases of Arabidopsis thaliana and Zea mays
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain weight	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 Grain sizes were diversely distributed in SNDH 113 populations, and OsBRKq1 was detected on chromosome 1 in an analysis of QTL mapping that used 1000 grain weight, grain length, and grain width
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain width	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 Grain sizes were diversely distributed in SNDH 113 populations, and OsBRKq1 was detected on chromosome 1 in an analysis of QTL mapping that used 1000 grain weight, grain length, and grain width
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	receptor kinase	OsBRKq1, Related Grain Size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice	 OsBRKq1 exhibited high sequence similarity with the brassinosteroid leucine-rich repeat-receptor kinases of Arabidopsis thaliana and Zea mays
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain size	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Moreover, we showed that OsBSK1-1 can be phosphorylated by OsBRI1 and can inhibit OsGSK2-mediated phosphorylation of BRASSINOSTEROID RESISTANT1 (OsBZR1)
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	BR	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	Brassinosteroid	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Moreover, we showed that OsBSK1-1 can be phosphorylated by OsBRI1 and can inhibit OsGSK2-mediated phosphorylation of BRASSINOSTEROID RESISTANT1 (OsBZR1)
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	architecture	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	 BR 	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	plant architecture	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	Kinase	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Further study showed that hfr131 is a new allele of OsBRI1 with a single-nucleotide polymorphism (G to A) in the coding region, leading to a T988I conversion at a conserved site of the kinase domain
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	The identification and characterization of a plant height and grain length related gene hfr131 in rice.
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 By combining yeast one-hybrid assays, chromatin immunoprecipitation-quantitative PCR and gene expression quantification, we demonstrated that OsARF17, an auxin response factor, could bind to the promoter region of HFR131 and positively regulated HFR131 expression, thereby regulating the plant height and grain length, and influencing brassinosteroid sensitivity
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Overall, this study identified hfr131 as a new allele of OsBRI1 that regulates plant height and grain length in rice, revealed that brassinosteroid and auxin might coordinate through OsARF17-HFR131 interaction, and provided a potential breeding target for improvement of rice yield
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain length	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	The identification and characterization of a plant height and grain length related gene hfr131 in rice.
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain length	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 By combining yeast one-hybrid assays, chromatin immunoprecipitation-quantitative PCR and gene expression quantification, we demonstrated that OsARF17, an auxin response factor, could bind to the promoter region of HFR131 and positively regulated HFR131 expression, thereby regulating the plant height and grain length, and influencing brassinosteroid sensitivity
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	grain length	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Overall, this study identified hfr131 as a new allele of OsBRI1 that regulates plant height and grain length in rice, revealed that brassinosteroid and auxin might coordinate through OsARF17-HFR131 interaction, and provided a potential breeding target for improvement of rice yield
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 By combining yeast one-hybrid assays, chromatin immunoprecipitation-quantitative PCR and gene expression quantification, we demonstrated that OsARF17, an auxin response factor, could bind to the promoter region of HFR131 and positively regulated HFR131 expression, thereby regulating the plant height and grain length, and influencing brassinosteroid sensitivity
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	brassinosteroid	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Overall, this study identified hfr131 as a new allele of OsBRI1 that regulates plant height and grain length in rice, revealed that brassinosteroid and auxin might coordinate through OsARF17-HFR131 interaction, and provided a potential breeding target for improvement of rice yield
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	Brassinosteroid	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 By combining yeast one-hybrid assays, chromatin immunoprecipitation-quantitative PCR and gene expression quantification, we demonstrated that OsARF17, an auxin response factor, could bind to the promoter region of HFR131 and positively regulated HFR131 expression, thereby regulating the plant height and grain length, and influencing brassinosteroid sensitivity
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	Brassinosteroid	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Overall, this study identified hfr131 as a new allele of OsBRI1 that regulates plant height and grain length in rice, revealed that brassinosteroid and auxin might coordinate through OsARF17-HFR131 interaction, and provided a potential breeding target for improvement of rice yield
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	kinase	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Further study showed that hfr131 is a new allele of OsBRI1 with a single-nucleotide polymorphism (G to A) in the coding region, leading to a T988I conversion at a conserved site of the kinase domain
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	auxin	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 By combining yeast one-hybrid assays, chromatin immunoprecipitation-quantitative PCR and gene expression quantification, we demonstrated that OsARF17, an auxin response factor, could bind to the promoter region of HFR131 and positively regulated HFR131 expression, thereby regulating the plant height and grain length, and influencing brassinosteroid sensitivity
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	auxin	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Overall, this study identified hfr131 as a new allele of OsBRI1 that regulates plant height and grain length in rice, revealed that brassinosteroid and auxin might coordinate through OsARF17-HFR131 interaction, and provided a potential breeding target for improvement of rice yield
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	yield	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Overall, this study identified hfr131 as a new allele of OsBRI1 that regulates plant height and grain length in rice, revealed that brassinosteroid and auxin might coordinate through OsARF17-HFR131 interaction, and provided a potential breeding target for improvement of rice yield
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	breeding	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Overall, this study identified hfr131 as a new allele of OsBRI1 that regulates plant height and grain length in rice, revealed that brassinosteroid and auxin might coordinate through OsARF17-HFR131 interaction, and provided a potential breeding target for improvement of rice yield
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	auxin response	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 By combining yeast one-hybrid assays, chromatin immunoprecipitation-quantitative PCR and gene expression quantification, we demonstrated that OsARF17, an auxin response factor, could bind to the promoter region of HFR131 and positively regulated HFR131 expression, thereby regulating the plant height and grain length, and influencing brassinosteroid sensitivity
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	height	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	The identification and characterization of a plant height and grain length related gene hfr131 in rice.
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	height	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 By combining yeast one-hybrid assays, chromatin immunoprecipitation-quantitative PCR and gene expression quantification, we demonstrated that OsARF17, an auxin response factor, could bind to the promoter region of HFR131 and positively regulated HFR131 expression, thereby regulating the plant height and grain length, and influencing brassinosteroid sensitivity
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	height	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Overall, this study identified hfr131 as a new allele of OsBRI1 that regulates plant height and grain length in rice, revealed that brassinosteroid and auxin might coordinate through OsARF17-HFR131 interaction, and provided a potential breeding target for improvement of rice yield
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	plant height	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	The identification and characterization of a plant height and grain length related gene hfr131 in rice.
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	plant height	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 By combining yeast one-hybrid assays, chromatin immunoprecipitation-quantitative PCR and gene expression quantification, we demonstrated that OsARF17, an auxin response factor, could bind to the promoter region of HFR131 and positively regulated HFR131 expression, thereby regulating the plant height and grain length, and influencing brassinosteroid sensitivity
D61|OsBRI1|OsBRKq1|HFR131	Os01g0718300	LOC_Os01g52050	plant height	The identification and characterization of a plant height and grain length related gene hfr131 in rice.	 Overall, this study identified hfr131 as a new allele of OsBRI1 that regulates plant height and grain length in rice, revealed that brassinosteroid and auxin might coordinate through OsARF17-HFR131 interaction, and provided a potential breeding target for improvement of rice yield
DAD-1|DAD1	Os04g0397000	LOC_Os04g32550	cell death	dad-1, A putative programmed cell death suppressor gene in rice	This rice dad-1 homolog can rescue the temperature-sensitive dad-1 mutants of hamster cells from apoptotic death, suggesting that the rice dad-1 homolog also functions as a suppressor for programmed cell death
DAD-1|DAD1	Os04g0397000	LOC_Os04g32550	cell death	dad-1, A putative programmed cell death suppressor gene in rice	dad-1, A putative programmed cell death suppressor gene in rice
DAD-1|DAD1	Os04g0397000	LOC_Os04g32550	temperature	dad-1, A putative programmed cell death suppressor gene in rice	This rice dad-1 homolog can rescue the temperature-sensitive dad-1 mutants of hamster cells from apoptotic death, suggesting that the rice dad-1 homolog also functions as a suppressor for programmed cell death
DAO	Os07g0572100	LOC_Os07g38440	salt stress	Putrescine differently influences the effect of salt stress on polyamine metabolism and ethylene synthesis in rice cultivars differing in salt resistance	Salt stress also increased diamine oxidase (DAO; 1
DAO	Os07g0572100	LOC_Os07g38440	salt	Putrescine differently influences the effect of salt stress on polyamine metabolism and ethylene synthesis in rice cultivars differing in salt resistance	Salt stress also increased diamine oxidase (DAO; 1
DAO	Os04g0475600	LOC_Os04g39980	seed	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Here, we demonstrate that the dioxygenase for auxin oxidation (DAO) gene, encoding a putative 2-oxoglutarate-dependent-Fe (II) dioxygenase, is essential for anther dehiscence, pollen fertility, and seed initiation in rice
DAO	Os04g0475600	LOC_Os04g39980	pollen	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Here, we demonstrate that the dioxygenase for auxin oxidation (DAO) gene, encoding a putative 2-oxoglutarate-dependent-Fe (II) dioxygenase, is essential for anther dehiscence, pollen fertility, and seed initiation in rice
DAO	Os04g0475600	LOC_Os04g39980	auxin	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Here, we demonstrate that the dioxygenase for auxin oxidation (DAO) gene, encoding a putative 2-oxoglutarate-dependent-Fe (II) dioxygenase, is essential for anther dehiscence, pollen fertility, and seed initiation in rice
DAO	Os04g0475600	LOC_Os04g39980	auxin	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Furthermore, exogenous application of IAA or overexpression of the auxin biosynthesis gene OsYUCCA1 phenocopies the dao mutants
DAO	Os04g0475600	LOC_Os04g39980	auxin	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Collectively, these data support a key role of DAO in auxin catabolism and maintenance of auxin homeostasis central to plant reproductive development
DAO	Os04g0475600	LOC_Os04g39980	anther	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Here, we demonstrate that the dioxygenase for auxin oxidation (DAO) gene, encoding a putative 2-oxoglutarate-dependent-Fe (II) dioxygenase, is essential for anther dehiscence, pollen fertility, and seed initiation in rice
DAO	Os04g0475600	LOC_Os04g39980	anther	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Rice mutant lines lacking a functional DAO display increased levels of free IAA in anthers and ovaries
DAO	Os04g0475600	LOC_Os04g39980	reproductive	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Collectively, these data support a key role of DAO in auxin catabolism and maintenance of auxin homeostasis central to plant reproductive development
DAO	Os04g0475600	LOC_Os04g39980	homeostasis	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Collectively, these data support a key role of DAO in auxin catabolism and maintenance of auxin homeostasis central to plant reproductive development
DAO	Os04g0475600	LOC_Os04g39980	iaa	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Rice mutant lines lacking a functional DAO display increased levels of free IAA in anthers and ovaries
DAO	Os04g0475600	LOC_Os04g39980	iaa	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Furthermore, exogenous application of IAA or overexpression of the auxin biosynthesis gene OsYUCCA1 phenocopies the dao mutants
DAO	Os04g0475600	LOC_Os04g39980	iaa	A role for a dioxygenase in auxin metabolism and reproductive development in rice	We show that recombinant DAO converts the active IAA into biologically inactive 2-oxoindole-3-acetic acid (OxIAA) in vitro
DAO	Os04g0475600	LOC_Os04g39980	fertility	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Here, we demonstrate that the dioxygenase for auxin oxidation (DAO) gene, encoding a putative 2-oxoglutarate-dependent-Fe (II) dioxygenase, is essential for anther dehiscence, pollen fertility, and seed initiation in rice
DARX1	Os05g0159300	LOC_Os05g06720	cellulose	Arabinosyl Deacetylase Modulates the Arabinoxylan Acetylation Profile and Secondary Wall Formation.	Two-dimensional 13C-13C correlation spectroscopy and atomic force microscopy further revealed that the abnormal acetylation pattern observed in darx1 interrupts arabinoxylan conformation and cellulose microfibril orientation, resulting in compromised secondary wall patterning and reduced mechanical strength
DBS1|OsNACK	Os01g0513900	LOC_Os01g33040	root	The rice mutant dwarf bamboo shoot 1: a leaky mutant of the NACK-type kinesin-like gene can initiate organ primordia but not organ development	Relative to the severe defects in shoot and root growth, the overall structure of the dbs1 embryo was almost normal
DBS1|OsNACK	Os01g0513900	LOC_Os01g33040	growth	The rice mutant dwarf bamboo shoot 1: a leaky mutant of the NACK-type kinesin-like gene can initiate organ primordia but not organ development	Relative to the severe defects in shoot and root growth, the overall structure of the dbs1 embryo was almost normal
DBS1|OsNACK	Os01g0513900	LOC_Os01g33040	growth	The rice mutant dwarf bamboo shoot 1: a leaky mutant of the NACK-type kinesin-like gene can initiate organ primordia but not organ development	These observations suggest that DBS1 is involved in the growth and development of organs but not in organ initiation or organogenesis
DBS1|OsNACK	Os01g0513900	LOC_Os01g33040	dwarf	The rice mutant dwarf bamboo shoot 1: a leaky mutant of the NACK-type kinesin-like gene can initiate organ primordia but not organ development	Here, we report on one of the most severe dwarf mutants of rice, dwarf bamboo shoot 1 (dbs1)
DBS1|OsNACK	Os01g0513900	LOC_Os01g33040	shoot	The rice mutant dwarf bamboo shoot 1: a leaky mutant of the NACK-type kinesin-like gene can initiate organ primordia but not organ development	Here, we report on one of the most severe dwarf mutants of rice, dwarf bamboo shoot 1 (dbs1)
DBS1|OsNACK	Os01g0513900	LOC_Os01g33040	shoot	The rice mutant dwarf bamboo shoot 1: a leaky mutant of the NACK-type kinesin-like gene can initiate organ primordia but not organ development	Relative to the severe defects in shoot and root growth, the overall structure of the dbs1 embryo was almost normal
DCA1	Os10g0456800	LOC_Os10g31850	drought	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.
DCA1	Os10g0456800	LOC_Os10g31850	drought	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	Downregulation of DCA1 significantly enhanced drought and salt tolerance in rice, and overexpression of DCA1 increased sensitivity to stress treatment
DCA1	Os10g0456800	LOC_Os10g31850	salt	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.
DCA1	Os10g0456800	LOC_Os10g31850	salt	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	Downregulation of DCA1 significantly enhanced drought and salt tolerance in rice, and overexpression of DCA1 increased sensitivity to stress treatment
DCA1	Os10g0456800	LOC_Os10g31850	tolerance	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.
DCA1	Os10g0456800	LOC_Os10g31850	tolerance	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	Downregulation of DCA1 significantly enhanced drought and salt tolerance in rice, and overexpression of DCA1 increased sensitivity to stress treatment
DCA1	Os10g0456800	LOC_Os10g31850	tolerance	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	Moreover, due to the evolutionary and functional conservation of DCA1 and DST in plants, engineering of this pathway has the potential to improve tolerance to abiotic stress in other important crop species
DCA1	Os10g0456800	LOC_Os10g31850	abiotic stress	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	Moreover, due to the evolutionary and functional conservation of DCA1 and DST in plants, engineering of this pathway has the potential to improve tolerance to abiotic stress in other important crop species
DCA1	Os10g0456800	LOC_Os10g31850	salt tolerance	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.
DCA1	Os10g0456800	LOC_Os10g31850	salt tolerance	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	Downregulation of DCA1 significantly enhanced drought and salt tolerance in rice, and overexpression of DCA1 increased sensitivity to stress treatment
DCA1	Os10g0456800	LOC_Os10g31850	stress	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	Downregulation of DCA1 significantly enhanced drought and salt tolerance in rice, and overexpression of DCA1 increased sensitivity to stress treatment
DCA1	Os10g0456800	LOC_Os10g31850	stress	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	Moreover, due to the evolutionary and functional conservation of DCA1 and DST in plants, engineering of this pathway has the potential to improve tolerance to abiotic stress in other important crop species
DCA1	Os10g0456800	LOC_Os10g31850	homeostasis	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	These phenotypes were mainly influenced by DCA1 and negatively regulated stomatal closure through the direct modulation of genes associated with H2O2 homeostasis
DCA1	Os10g0456800	LOC_Os10g31850	stomatal	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	These phenotypes were mainly influenced by DCA1 and negatively regulated stomatal closure through the direct modulation of genes associated with H2O2 homeostasis
DCA1	Os10g0456800	LOC_Os10g31850	biotic stress	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice.	Moreover, due to the evolutionary and functional conservation of DCA1 and DST in plants, engineering of this pathway has the potential to improve tolerance to abiotic stress in other important crop species
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	pollen	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.	The pollen grains of dcm1 are proved to be defective in exine formation
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	pollen	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.	Furthermore, peripheral callose surrounding the dcm1 pollen mother cells (PMCs) also disappeared untimely around pachytene
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	zinc	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	R protein	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	meiotic	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	meiotic	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.	We demonstrated that meiotic cytokinesis defect in dcm1 is caused by prematurely dissolution of callosic plates
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	meiotic	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.	Together, we propose that DCM1 plays an essential role in male meiotic cytokinesis by preserving callose from prematurely dissolution in rice
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	pollen	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	Rice plants carrying the recessive mutant allele saw1 produces abnormal anthers with a swollen anther wall and aborted pollen
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	anther	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	anther	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	Rice plants carrying the recessive mutant allele saw1 produces abnormal anthers with a swollen anther wall and aborted pollen
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	development	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	gibberellin	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	zinc	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	SAW1 encodes a novel nucleus-localizing CCCH-tandem zinc finger protein, and this protein could directly bind to the promoter region of the GA synthesis gene OsGA20ox3 to induce its anther-specific expression
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	homeostasis	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	ga	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	SAW1 encodes a novel nucleus-localizing CCCH-tandem zinc finger protein, and this protein could directly bind to the promoter region of the GA synthesis gene OsGA20ox3 to induce its anther-specific expression
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	ga	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	In the saw1 anther, the significantly decreased OsGA20ox3 expression resulted in lower bioactive GA content, which in turn caused the lower expression of the GA-inducible anther-regulator gene OsGAMYB
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	sterile	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	CRISPR/Cas9-mediated knockout of SAW1 in rice generated similar male sterile plants
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	R protein	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	R protein	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	SAW1 encodes a novel nucleus-localizing CCCH-tandem zinc finger protein, and this protein could directly bind to the promoter region of the GA synthesis gene OsGA20ox3 to induce its anther-specific expression
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	Gibberellin	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	GA	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	SAW1 encodes a novel nucleus-localizing CCCH-tandem zinc finger protein, and this protein could directly bind to the promoter region of the GA synthesis gene OsGA20ox3 to induce its anther-specific expression
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	GA	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	In the saw1 anther, the significantly decreased OsGA20ox3 expression resulted in lower bioactive GA content, which in turn caused the lower expression of the GA-inducible anther-regulator gene OsGAMYB
DCM1|SAW1	Os06g0638000	LOC_Os06g43120	anther development	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	A novel CCCH-type zinc-finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.
DCW11	Os02g0255100	LOC_Os02g15594	mitochondria	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	NIMA-related kinase) and DCW11 encoding a mitochondrial putative protein phosphatase 2C were found in our previous microarray study as down-regulated genes in the rice CW-CMS line, which lacked pollen germination ability
DCW11	Os02g0255100	LOC_Os02g15594	mitochondria	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	These results suggest that OsNek3 is downstream of DCW11 in retrograde signaling from the mitochondria to the nucleus and is involved in CW-CMS
DCW11	Os02g0255100	LOC_Os02g15594	mitochondria	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11
DCW11	Os02g0255100	LOC_Os02g15594	anther	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	DCW11 mRNA was preferentially expressed in anthers, with the highest expression in mature pollen
DCW11	Os02g0255100	LOC_Os02g15594	pollen	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	DCW11 mRNA was preferentially expressed in anthers, with the highest expression in mature pollen
DCW11	Os02g0255100	LOC_Os02g15594	pollen	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	Knockdown of DCW11 in wild-type rice by RNA interference caused a major loss of seed-set fertility, without visible defect in pollen development
DCW11	Os02g0255100	LOC_Os02g15594	pollen	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	Our result indicates that DCW11 could play a role as a mitochondrial signal transduction mediator in pollen germination
DCW11	Os02g0255100	LOC_Os02g15594	mitochondria	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	As predicted by the N-terminal sequence, DCW11 signal peptide-green fluorescent protein (GFP) fusion protein was localized in mitochondria
DCW11	Os02g0255100	LOC_Os02g15594	mitochondria	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	This idea was supported by the up-regulation of alternative oxidase 1a (AOX1a), which is known to be regulated by mitochondrial retrograde signaling, in DCW11 knockdown lines
DCW11	Os02g0255100	LOC_Os02g15594	mitochondria	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	Our result indicates that DCW11 could play a role as a mitochondrial signal transduction mediator in pollen germination
DCW11	Os02g0255100	LOC_Os02g15594	mitochondria	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility
DCW11	Os02g0255100	LOC_Os02g15594	pollen	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	NIMA-related kinase) and DCW11 encoding a mitochondrial putative protein phosphatase 2C were found in our previous microarray study as down-regulated genes in the rice CW-CMS line, which lacked pollen germination ability
DCW11	Os02g0255100	LOC_Os02g15594	seed	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	Knockdown of DCW11 in wild-type rice by RNA interference caused a major loss of seed-set fertility, without visible defect in pollen development
DCW11	Os02g0255100	LOC_Os02g15594	fertility	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	Knockdown of DCW11 in wild-type rice by RNA interference caused a major loss of seed-set fertility, without visible defect in pollen development
DCW11	Os02g0255100	LOC_Os02g15594	sterility	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11
DCW11	Os02g0255100	LOC_Os02g15594	sterile	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility
DCW11	Os02g0255100	LOC_Os02g15594	sterility	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is related to cytoplasmic male sterility
DDF1	Os06g0139000	LOC_Os06g04710	dwarf	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	In this study, we characterized a recessive mutant dwarf and deformed flower 1-1 (ddf1-1) in Oryza sativa (rice)
DDF1	Os06g0139000	LOC_Os06g04710	organ size	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	DDF1 controls organ size by regulating both cell division and cell expansion
DDF1	Os06g0139000	LOC_Os06g04710	spikelet	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	In the ddf1-1 spikelet, the specification of floral organs in whorls 2 and 3 is altered, with most lodicules and stamens being transformed into glume-like organs and pistil-like organs, respectively, but the specification of lemma/palea and pistil in whorls 1 and 4 is not affected
DDF1	Os06g0139000	LOC_Os06g04710	reproductive	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	DDF1 encodes an F-box protein anchored in the nucleolus, and is expressed in almost all vegetative and reproductive tissues
DDF1	Os06g0139000	LOC_Os06g04710	growth	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	Collectively, these results revealed that DDF1, as a newly identified F-box gene, is a crucial genetic factor with pleiotropic functions for both vegetative growth and floral organ specification in rice
DDF1	Os06g0139000	LOC_Os06g04710	lemma	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	In the ddf1-1 spikelet, the specification of floral organs in whorls 2 and 3 is altered, with most lodicules and stamens being transformed into glume-like organs and pistil-like organs, respectively, but the specification of lemma/palea and pistil in whorls 1 and 4 is not affected
DDF1	Os06g0139000	LOC_Os06g04710	vegetative	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	DDF1 encodes an F-box protein anchored in the nucleolus, and is expressed in almost all vegetative and reproductive tissues
DDF1	Os06g0139000	LOC_Os06g04710	vegetative	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	Collectively, these results revealed that DDF1, as a newly identified F-box gene, is a crucial genetic factor with pleiotropic functions for both vegetative growth and floral organ specification in rice
DDF1	Os06g0139000	LOC_Os06g04710	stamen	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	In the ddf1-1 spikelet, the specification of floral organs in whorls 2 and 3 is altered, with most lodicules and stamens being transformed into glume-like organs and pistil-like organs, respectively, but the specification of lemma/palea and pistil in whorls 1 and 4 is not affected
DDF1	Os06g0139000	LOC_Os06g04710	floral	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	In the ddf1-1 spikelet, the specification of floral organs in whorls 2 and 3 is altered, with most lodicules and stamens being transformed into glume-like organs and pistil-like organs, respectively, but the specification of lemma/palea and pistil in whorls 1 and 4 is not affected
DDF1	Os06g0139000	LOC_Os06g04710	floral	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	Consistent with the mutant floral phenotype, DDF1 positively regulates B-class genes OsMADS4 and OsMADS16, and negatively regulates pistil specification gene DL
DDF1	Os06g0139000	LOC_Os06g04710	floral	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	Collectively, these results revealed that DDF1, as a newly identified F-box gene, is a crucial genetic factor with pleiotropic functions for both vegetative growth and floral organ specification in rice
DDF1	Os06g0139000	LOC_Os06g04710	cell division	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	DDF1 controls organ size by regulating both cell division and cell expansion
DDF1	Os06g0139000	LOC_Os06g04710	flower	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	In this study, we characterized a recessive mutant dwarf and deformed flower 1-1 (ddf1-1) in Oryza sativa (rice)
DDF1	Os06g0139000	LOC_Os06g04710	palea	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	In the ddf1-1 spikelet, the specification of floral organs in whorls 2 and 3 is altered, with most lodicules and stamens being transformed into glume-like organs and pistil-like organs, respectively, but the specification of lemma/palea and pistil in whorls 1 and 4 is not affected
DEAP1	Os04g0574200	LOC_Os04g48490	development	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 DEAP1 encodes a plasma membrane-associated member of group III plant FLAs and is specifically and temporally expressed in reproductive cells and the tapetum layer during male development
DEAP1	Os04g0574200	LOC_Os04g48490	development	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Gene expression studies revealed reduced transcript accumulation of genes related to exine formation, aperture patterning, and tapetum development in deap1 mutants
DEAP1	Os04g0574200	LOC_Os04g48490	development	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Moreover, DEAP1 may interact with two rice D6 PROTEIN KINASE-LIKE3s (OsD6PKL3s), homologs of a known Arabidopsis aperture protein, to affect rice pollen aperture development
DEAP1	Os04g0574200	LOC_Os04g48490	development	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Our findings suggested that DEAP1 is involved in male reproductive development and may affect exine formation and aperture patterning, thereby providing new insights into the molecular functions of plant FLAs in male fertility
DEAP1	Os04g0574200	LOC_Os04g48490	fertility	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.
DEAP1	Os04g0574200	LOC_Os04g48490	fertility	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Our findings suggested that DEAP1 is involved in male reproductive development and may affect exine formation and aperture patterning, thereby providing new insights into the molecular functions of plant FLAs in male fertility
DEAP1	Os04g0574200	LOC_Os04g48490	pollen	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 The deap1 mutant anthers produced aberrant pollen grains with defective exine formation and a flattened aperture annulus and exhibited slightly delayed tapetum degradation
DEAP1	Os04g0574200	LOC_Os04g48490	pollen	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Moreover, DEAP1 may interact with two rice D6 PROTEIN KINASE-LIKE3s (OsD6PKL3s), homologs of a known Arabidopsis aperture protein, to affect rice pollen aperture development
DEAP1	Os04g0574200	LOC_Os04g48490	reproductive	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 DEAP1 encodes a plasma membrane-associated member of group III plant FLAs and is specifically and temporally expressed in reproductive cells and the tapetum layer during male development
DEAP1	Os04g0574200	LOC_Os04g48490	reproductive	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Our findings suggested that DEAP1 is involved in male reproductive development and may affect exine formation and aperture patterning, thereby providing new insights into the molecular functions of plant FLAs in male fertility
DEAP1	Os04g0574200	LOC_Os04g48490	protein kinase	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Moreover, DEAP1 may interact with two rice D6 PROTEIN KINASE-LIKE3s (OsD6PKL3s), homologs of a known Arabidopsis aperture protein, to affect rice pollen aperture development
DEAP1	Os04g0574200	LOC_Os04g48490	reproductive development	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Our findings suggested that DEAP1 is involved in male reproductive development and may affect exine formation and aperture patterning, thereby providing new insights into the molecular functions of plant FLAs in male fertility
DEAP1	Os04g0574200	LOC_Os04g48490	male reproductive development	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Our findings suggested that DEAP1 is involved in male reproductive development and may affect exine formation and aperture patterning, thereby providing new insights into the molecular functions of plant FLAs in male fertility
DEAP1	Os04g0574200	LOC_Os04g48490	plasma membrane	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 DEAP1 encodes a plasma membrane-associated member of group III plant FLAs and is specifically and temporally expressed in reproductive cells and the tapetum layer during male development
DEAP1	Os04g0574200	LOC_Os04g48490	tapetum	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 The deap1 mutant anthers produced aberrant pollen grains with defective exine formation and a flattened aperture annulus and exhibited slightly delayed tapetum degradation
DEAP1	Os04g0574200	LOC_Os04g48490	tapetum	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 DEAP1 encodes a plasma membrane-associated member of group III plant FLAs and is specifically and temporally expressed in reproductive cells and the tapetum layer during male development
DEAP1	Os04g0574200	LOC_Os04g48490	tapetum	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Gene expression studies revealed reduced transcript accumulation of genes related to exine formation, aperture patterning, and tapetum development in deap1 mutants
DEAP1	Os04g0574200	LOC_Os04g48490	male fertility	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.
DEAP1	Os04g0574200	LOC_Os04g48490	male fertility	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	 Our findings suggested that DEAP1 is involved in male reproductive development and may affect exine formation and aperture patterning, thereby providing new insights into the molecular functions of plant FLAs in male fertility
DEC	Os12g0465700	LOC_Os12g27994	cytokinin	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway	Expression analysis showed that several type-A response regulator genes that act in the cytokinin (CK) signaling pathway were downregulated in the dec mutant
DEC	Os12g0465700	LOC_Os12g27994	cytokinin	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway
DEC	Os12g0465700	LOC_Os12g27994	meristem	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway	In contrast to the SAM, the size of the root apical meristem (RAM) in dec was reduced, and cell division activity was suppressed
DEC	Os12g0465700	LOC_Os12g27994	seedling	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway	In addition, dec seedlings showed a reduced responsiveness to exogenous CK
DEC	Os12g0465700	LOC_Os12g27994	root	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway	In contrast to the SAM, the size of the root apical meristem (RAM) in dec was reduced, and cell division activity was suppressed
DEC	Os12g0465700	LOC_Os12g27994	root apical meristem	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway	In contrast to the SAM, the size of the root apical meristem (RAM) in dec was reduced, and cell division activity was suppressed
DEC	Os12g0465700	LOC_Os12g27994	cell division	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway	The dec mutants had an enlarged SAM with enhanced cell division activity
DEC	Os12g0465700	LOC_Os12g27994	cell division	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway	In contrast to the SAM, the size of the root apical meristem (RAM) in dec was reduced, and cell division activity was suppressed
DEL1	Os10g0457200	LOC_Os10g31910	leaf	A rice PECTATE LYASE-LIKE gene is required for plant growth and leaf senescence.	Our research indicates that DEL1 is involved in both the maintenance of normal cell division and the induction of leaf senescence
DEL1	Os10g0457200	LOC_Os10g31910	leaf senescence	A rice PECTATE LYASE-LIKE gene is required for plant growth and leaf senescence.	Our research indicates that DEL1 is involved in both the maintenance of normal cell division and the induction of leaf senescence
DEL1	Os10g0457200	LOC_Os10g31910	senescence	A rice PECTATE LYASE-LIKE gene is required for plant growth and leaf senescence.	In addition, transcriptome assay revealed that a set of cell wall function and senescence related gene expression was altered in del1 plants
DEL1	Os10g0457200	LOC_Os10g31910	senescence	A rice PECTATE LYASE-LIKE gene is required for plant growth and leaf senescence.	Our research indicates that DEL1 is involved in both the maintenance of normal cell division and the induction of leaf senescence
DEL1	Os10g0457200	LOC_Os10g31910	cell division	A rice PECTATE LYASE-LIKE gene is required for plant growth and leaf senescence.	Our research indicates that DEL1 is involved in both the maintenance of normal cell division and the induction of leaf senescence
DEL1	Os10g0457200	LOC_Os10g31910	cell wall	A rice PECTATE LYASE-LIKE gene is required for plant growth and leaf senescence.	Functional analysis revealed that mutation of DEL1 decreased the total PEL enzymatic activity, increased the degree of methylesterified homogalacturonan and altered the cell wall composition and structure
DEL1	Os10g0457200	LOC_Os10g31910	cell wall	A rice PECTATE LYASE-LIKE gene is required for plant growth and leaf senescence.	In addition, transcriptome assay revealed that a set of cell wall function and senescence related gene expression was altered in del1 plants
DEL1	Os10g0457200	LOC_Os10g31910	cell cycle	A rice PECTATE LYASE-LIKE gene is required for plant growth and leaf senescence.	Further investigation revealed that the decline in cell number in del1 was affected by the cell cycle
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	shoot	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	The expression level of OsCKX2 in the shoot apex of Dn1-1 plants is similar to that in the wild type, indicating that OsCKX2 does not contribute to an increased number of spikelets
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	DN1 is allelic to DENSE AND ERECT PANICLE 1 (DEP1) (=qPE(9-1))
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Recently, qPE9-1 has been successfully cloned; however, the genetic effect on grain yield per plant of the erect panicle allele qPE9-1 is controversial yet
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Therefore, we concluded that the qPE9-1 was a major factor controlling panicle architecture, and qPE9-1 had pleiotropic nature, with negative effects on grain yield per plant
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The qPE9-1 gene has been proved to be widely used in high-yield rice cultivar developments, conferring erect panicle character in japonica rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Recently, qPE9-1 has been successfully cloned; however, the genetic effect on grain yield per plant of the erect panicle allele qPE9-1 is controversial yet
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	In the present study, a drooping panicle parent Nongken 57, carrying qpe9-1 allele, was used as recurrent parent to successively backcross to a typical erect panicle line from the double haploid (DH) population (Wuyunjing 8/Nongken 57), which was previously shown to carry qPE9-1 allele
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Therefore, we concluded that the qPE9-1 was a major factor controlling panicle architecture, and qPE9-1 had pleiotropic nature, with negative effects on grain yield per plant
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	This result strongly suggests that the erect panicle allele qPE9-1 should be used together with other favorable genes in the high-yield breeding practice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	dwarf	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	A comparison of the Dn1-1 and Dn1-3 alleles suggests that the N-terminal region of DN1 contains a coiled-coil domain and a nuclear localization signal that might be responsible for semi-dwarfness
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	cadmium	Rice DEP1, encoding a highly cysteine-rich G protein gamma subunit, confers cadmium tolerance on yeast cells and plants	A rice cDNA, OsDEP1, encoding a highly cysteine (Cys)-rich G protein gamma subunit, was initially identified as it conferred cadmium (Cd) tolerance on yeast cells
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	cadmium	Rice DEP1, encoding a highly cysteine-rich G protein gamma subunit, confers cadmium tolerance on yeast cells and plants	Rice DEP1, encoding a highly cysteine-rich G protein gamma subunit, confers cadmium tolerance on yeast cells and plants
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The qPE9-1 gene has been proved to be widely used in high-yield rice cultivar developments, conferring erect panicle character in japonica rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Recently, qPE9-1 has been successfully cloned; however, the genetic effect on grain yield per plant of the erect panicle allele qPE9-1 is controversial yet
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	In the present study, a drooping panicle parent Nongken 57, carrying qpe9-1 allele, was used as recurrent parent to successively backcross to a typical erect panicle line from the double haploid (DH) population (Wuyunjing 8/Nongken 57), which was previously shown to carry qPE9-1 allele
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	This result strongly suggests that the erect panicle allele qPE9-1 should be used together with other favorable genes in the high-yield breeding practice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Recently, qPE9-1 has been successfully cloned; however, the genetic effect on grain yield per plant of the erect panicle allele qPE9-1 is controversial yet
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Therefore, we concluded that the qPE9-1 was a major factor controlling panicle architecture, and qPE9-1 had pleiotropic nature, with negative effects on grain yield per plant
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain	Natural variation at the DEP1 locus enhances grain yield in rice	Natural variation at the DEP1 locus enhances grain yield in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain yield	Natural variation at the DEP1 locus enhances grain yield in rice	Natural variation at the DEP1 locus enhances grain yield in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	DN1 is allelic to DENSE AND ERECT PANICLE 1 (DEP1) (=qPE(9-1))
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	In addition, the qPE9-1 locus regulates panicle and grain length, grain weight, and consequently grain yield
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	gibberellin	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	Dn1-1 plants have normal sensitivity to gibberellin, brassinolide, and kinetin, and we observed no genetic epistasis with brassinolide-related mutants, suggesting that DN1 does not function in the signaling pathways of these phytohormones
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain weight	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	In addition, the qPE9-1 locus regulates panicle and grain length, grain weight, and consequently grain yield
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle architecture	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle architecture	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Therefore, we concluded that the qPE9-1 was a major factor controlling panicle architecture, and qPE9-1 had pleiotropic nature, with negative effects on grain yield per plant
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	Here we report the map-based cloning of a major quantitative trait locus, qPE9-1, which plays an integral role in regulation of rice plant architecture including panicle erectness
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	Phenotypic comparisons of a set of near-isogenic lines and transgenic lines reveal that the functional allele (qPE9-1) results in drooping panicles, and the loss-of-function mutation (qpe9-1) leads to more erect panicles
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	In addition, the qPE9-1 locus regulates panicle and grain length, grain weight, and consequently grain yield
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	We propose that the panicle erectness trait resulted from a natural random loss-of-function mutation for the qPE9-1 gene and has subsequently been the target of artificial selection during japonica rice breeding
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Identification and characterization of a major QTL responsible for erect panicle trait in japonica rice (Oryza sativa L.)	In addition, we found that H90, the nearest marker to qPE9-1, used for genotyping 38 cultivars with extremely erect and drooping panicles, segregated in agreement with PC, suggesting the H90 product was possibly part of the qPE9-1 gene or closely related to it
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	In addition, the qPE9-1 locus regulates panicle and grain length, grain weight, and consequently grain yield
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	spikelet	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	The expression level of OsCKX2 in the shoot apex of Dn1-1 plants is similar to that in the wild type, indicating that OsCKX2 does not contribute to an increased number of spikelets
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain yield	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	In addition, the qPE9-1 locus regulates panicle and grain length, grain weight, and consequently grain yield
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	phytohormone	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	Dn1-1 plants have normal sensitivity to gibberellin, brassinolide, and kinetin, and we observed no genetic epistasis with brassinolide-related mutants, suggesting that DN1 does not function in the signaling pathways of these phytohormones
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	Here we report the map-based cloning of a major quantitative trait locus, qPE9-1, which plays an integral role in regulation of rice plant architecture including panicle erectness
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	Phenotypic comparisons of a set of near-isogenic lines and transgenic lines reveal that the functional allele (qPE9-1) results in drooping panicles, and the loss-of-function mutation (qpe9-1) leads to more erect panicles
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	We propose that the panicle erectness trait resulted from a natural random loss-of-function mutation for the qPE9-1 gene and has subsequently been the target of artificial selection during japonica rice breeding
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	architecture	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	Here we report the map-based cloning of a major quantitative trait locus, qPE9-1, which plays an integral role in regulation of rice plant architecture including panicle erectness
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	architecture	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	breeding	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	We propose that the panicle erectness trait resulted from a natural random loss-of-function mutation for the qPE9-1 gene and has subsequently been the target of artificial selection during japonica rice breeding
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	height	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	architecture	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	architecture	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Therefore, we concluded that the qPE9-1 was a major factor controlling panicle architecture, and qPE9-1 had pleiotropic nature, with negative effects on grain yield per plant
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	domestication	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain weight	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	We show that the rice DENSE PANICLE 1 (DN1) mutant allele Dn1-1 causes both of these characteristics and that Dn1-1 is a loss-of-function mutation
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain length	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication	In addition, the qPE9-1 locus regulates panicle and grain length, grain weight, and consequently grain yield
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	breeding	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	This result strongly suggests that the erect panicle allele qPE9-1 should be used together with other favorable genes in the high-yield breeding practice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	Natural variation at the DEP1 locus enhances grain yield in rice	Natural variation at the DEP1 locus enhances grain yield in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	breeding	Identification and characterization of a major QTL responsible for erect panicle trait in japonica rice (Oryza sativa L.)	These data demonstrated that H90 could be used for marker-aided selection for the PE trait in breeding and in the cloning of qPE9-1
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	tiller	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The qPE9-1 gene has been proved to be widely used in high-yield rice cultivar developments, conferring erect panicle character in japonica rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Recently, qPE9-1 has been successfully cloned; however, the genetic effect on grain yield per plant of the erect panicle allele qPE9-1 is controversial yet
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	The comparison of agronomic traits between the NILs showed that, when qpe9-1 was replaced by qPE9-1, the panicle architecture was changed from drooping to erect; moreover, the panicle length, plant height, 1000-grain weight and the tillers were significantly decreased, consequently resulting in the dramatic decrease of grain yield per plant by 30%
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Therefore, we concluded that the qPE9-1 was a major factor controlling panicle architecture, and qPE9-1 had pleiotropic nature, with negative effects on grain yield per plant
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	This result strongly suggests that the erect panicle allele qPE9-1 should be used together with other favorable genes in the high-yield breeding practice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.)
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Identification and characterization of a major QTL responsible for erect panicle trait in japonica rice (Oryza sativa L.)	In addition, we found that H90, the nearest marker to qPE9-1, used for genotyping 38 cultivars with extremely erect and drooping panicles, segregated in agreement with PC, suggesting the H90 product was possibly part of the qPE9-1 gene or closely related to it
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	Variations in DENSE AND ERECT PANICLE 1 (DEP1) contribute to the diversity of the panicle trait in high-yielding japonica rice varieties in northern China.	In order to improve the genetic diversity of DEP1, we used a rice germplasm collection of 72 high yielding japonica rice varieties to analyze the contribution of DEP1 to the panicle traits
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	breeding	Variations in DENSE AND ERECT PANICLE 1 (DEP1) contribute to the diversity of the panicle trait in high-yielding japonica rice varieties in northern China.	The SNP (G/C) at the promoter region will contribute to the flexible application of DEP1 in rice breeding
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	nitrogen	The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice.	DEP1 is a G protein gamma subunit that is involved in the regulation of erect panicle, number of grains per panicle, nitrogen uptake, and stress-tolerance through the G protein signal pathway
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice.	Here we review the development of erect panicle rice varieties, DEP1 alleles and regulatory network, and its physiological and morphological functions
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	development	The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice.	Here we review the development of erect panicle rice varieties, DEP1 alleles and regulatory network, and its physiological and morphological functions
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	development	The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice.	Additionally, the further increasing the yield potential of erect-panicle super-rice, and the development of molecular designing breeding for indica-japonica hybrid rice with the dep1 gene are also prospected
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grains per panicle	The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice.	DEP1 is a G protein gamma subunit that is involved in the regulation of erect panicle, number of grains per panicle, nitrogen uptake, and stress-tolerance through the G protein signal pathway
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice.	Additionally, the further increasing the yield potential of erect-panicle super-rice, and the development of molecular designing breeding for indica-japonica hybrid rice with the dep1 gene are also prospected
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	breeding	The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice.	Additionally, the further increasing the yield potential of erect-panicle super-rice, and the development of molecular designing breeding for indica-japonica hybrid rice with the dep1 gene are also prospected
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice.	DEP1 is a G protein gamma subunit that is involved in the regulation of erect panicle, number of grains per panicle, nitrogen uptake, and stress-tolerance through the G protein signal pathway
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice.	Here we review the development of erect panicle rice varieties, DEP1 alleles and regulatory network, and its physiological and morphological functions
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	nitrogen	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	The DEP1 (dense and erect panicle 1) gene, which corresponds to the erect panicle architecture, shows a pleiotropic effect in increasing grain yield and nitrogen use efficiency (NUE) in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	nitrogen	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	Nevertheless, it remains unclear whether the carbon-nitrogen metabolic balance changes as the dep1 allele enhances nitrogen uptake and assimilation
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	The DEP1 (dense and erect panicle 1) gene, which corresponds to the erect panicle architecture, shows a pleiotropic effect in increasing grain yield and nitrogen use efficiency (NUE) in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	The DEP1 (dense and erect panicle 1) gene, which corresponds to the erect panicle architecture, shows a pleiotropic effect in increasing grain yield and nitrogen use efficiency (NUE) in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	In this study, we generated transgenic Akitakomati plants by overexpressing dep1 and analyzed the carbon-nitrogen metabolic status, gene expression profiles, and grain yield and quality
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain yield	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain yield	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	The DEP1 (dense and erect panicle 1) gene, which corresponds to the erect panicle architecture, shows a pleiotropic effect in increasing grain yield and nitrogen use efficiency (NUE) in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	grain yield	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	In this study, we generated transgenic Akitakomati plants by overexpressing dep1 and analyzed the carbon-nitrogen metabolic status, gene expression profiles, and grain yield and quality
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	The DEP1 (dense and erect panicle 1) gene, which corresponds to the erect panicle architecture, shows a pleiotropic effect in increasing grain yield and nitrogen use efficiency (NUE) in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	yield	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	In this study, we generated transgenic Akitakomati plants by overexpressing dep1 and analyzed the carbon-nitrogen metabolic status, gene expression profiles, and grain yield and quality
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	erect	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	The DEP1 (dense and erect panicle 1) gene, which corresponds to the erect panicle architecture, shows a pleiotropic effect in increasing grain yield and nitrogen use efficiency (NUE) in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	panicle architecture	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	The DEP1 (dense and erect panicle 1) gene, which corresponds to the erect panicle architecture, shows a pleiotropic effect in increasing grain yield and nitrogen use efficiency (NUE) in rice
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	quality	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	quality	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	In this study, we generated transgenic Akitakomati plants by overexpressing dep1 and analyzed the carbon-nitrogen metabolic status, gene expression profiles, and grain yield and quality
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	root	Heterotrimeric G protein subunit DEP1 is involved in hydrogen peroxide signaling and promotes aerenchyma formation in rice roots	These results indicated that DEP1 enhanced H2O2 biosynthesis and promoted the cell death of the root cortex, thus contributing to aerenchyma development in WYJ8(DEP1)
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	development	Heterotrimeric G protein subunit DEP1 is involved in hydrogen peroxide signaling and promotes aerenchyma formation in rice roots	These results indicated that DEP1 enhanced H2O2 biosynthesis and promoted the cell death of the root cortex, thus contributing to aerenchyma development in WYJ8(DEP1)
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	cell death	Heterotrimeric G protein subunit DEP1 is involved in hydrogen peroxide signaling and promotes aerenchyma formation in rice roots	However, it is unclear whether DEP1 regulates cell death for aerenchyma formation in rice roots
DEP1|DN1|qPE9-1|OsDEP1	Os09g0441900	LOC_Os09g26999	cell death	Heterotrimeric G protein subunit DEP1 is involved in hydrogen peroxide signaling and promotes aerenchyma formation in rice roots	These results indicated that DEP1 enhanced H2O2 biosynthesis and promoted the cell death of the root cortex, thus contributing to aerenchyma development in WYJ8(DEP1)
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	erect	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice	The SRS1 gene is identical to the previously identified DENSE AND ERECT PANICLE 2 (DEP2)
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	grain	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Despite a more compact plant type in the dep2 mutant, no significant alteration in grain production was found between wild type and dep2 mutant
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	seed size	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	seed	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	grain	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	In addition, EP2 also regulates other panicle characteristics, such as panicle length and grain size, but grain number per panicle shows little change, indicating that the mutation of the ep2 gene could be applied in EP-type indica rice breeding
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	Here, we identified two allelic erect-panicle mutants in indica rice, erect panicle2-1 (ep2-1) and erect panicle2-2 (ep2-2), exhibiting the characteristic erect panicle phenotype
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	Anatomical investigations revealed that the ep2 mutants have more vascular bundles and a thicker stem than that of wild-type plants, explaining the panicle erectness phenotype in ep2 mutants
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	In addition, EP2 also regulates other panicle characteristics, such as panicle length and grain size, but grain number per panicle shows little change, indicating that the mutation of the ep2 gene could be applied in EP-type indica rice breeding
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice	The SRS1 gene is identical to the previously identified DENSE AND ERECT PANICLE 2 (DEP2)
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	erect	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	Here, we identified two allelic erect-panicle mutants in indica rice, erect panicle2-1 (ep2-1) and erect panicle2-2 (ep2-2), exhibiting the characteristic erect panicle phenotype
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	erect	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	Anatomical investigations revealed that the ep2 mutants have more vascular bundles and a thicker stem than that of wild-type plants, explaining the panicle erectness phenotype in ep2 mutants
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Here, dense and erect panicle 2 (dep2) mutant, which shows a dense and erect panicle phenotype, was identified
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Expression profiling of DEP2 revealed that it is highly expressed in young tissues, with most abundance in young panicles
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Morphological and expression analysis indicated that mutation in DEP2 mainly affects the rapid elongation of rachis and primary and secondary branches, but does not impair the initiation or formation of panicle primordia
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Further analysis suggests that decrease of panicle length in dep2 is caused by a defect in cell proliferation during the exponential elongation of panicle
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Therefore, the study of DEP2 not only strengthens our understanding of the molecular genetic basis of panicle architecture but also has important implications for rice breeding
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	vascular bundle	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	Anatomical investigations revealed that the ep2 mutants have more vascular bundles and a thicker stem than that of wild-type plants, explaining the panicle erectness phenotype in ep2 mutants
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	vascular bundle	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	It was shown that EP2 was specifically expressed in the vascular bundles of internodes by GUS staining and RT-PCR
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	erect	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Here, dense and erect panicle 2 (dep2) mutant, which shows a dense and erect panicle phenotype, was identified
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	architecture	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Therefore, the study of DEP2 not only strengthens our understanding of the molecular genetic basis of panicle architecture but also has important implications for rice breeding
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	stem	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	Anatomical investigations revealed that the ep2 mutants have more vascular bundles and a thicker stem than that of wild-type plants, explaining the panicle erectness phenotype in ep2 mutants
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	lemma	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice	In the longitudinal direction of the lemma, both cell length and cell number are reduced in srs1-1 compared to the wild type, whereas in the lateral cross section of the lemma, cell length in srs1-1 is greater than that in the wild type, but the cell number in srs1-1 is the same as that in wild type
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	lemma	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice	These results suggest that the small and round seed phenotype of srs1-1 is due to the reduction in both cell length and cell number in the longitudinal direction, and the elongation of the cells in the lateral direction of the lemma
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	grain size	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	In addition, EP2 also regulates other panicle characteristics, such as panicle length and grain size, but grain number per panicle shows little change, indicating that the mutation of the ep2 gene could be applied in EP-type indica rice breeding
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle architecture	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Therefore, the study of DEP2 not only strengthens our understanding of the molecular genetic basis of panicle architecture but also has important implications for rice breeding
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	panicle	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice	The SRS1 mRNA and proteins are abundant in wild type rice specifically in young organs, namely young leaves, internodes and panicles
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	grain number	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	In addition, EP2 also regulates other panicle characteristics, such as panicle length and grain size, but grain number per panicle shows little change, indicating that the mutation of the ep2 gene could be applied in EP-type indica rice breeding
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	breeding	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation	Therefore, the study of DEP2 not only strengthens our understanding of the molecular genetic basis of panicle architecture but also has important implications for rice breeding
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	seed	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice	The causal gene of a novel small and round seed mutant 1 (srs1) was identified in rice by map-based cloning and named SMALL AND ROUND SEED 1 (SRS1)
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	seed	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice	These results suggest that the small and round seed phenotype of srs1-1 is due to the reduction in both cell length and cell number in the longitudinal direction, and the elongation of the cells in the lateral direction of the lemma
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	breeding	Erect panicle2 encodes a novel protein that regulates panicle erectness in indica rice	In addition, EP2 also regulates other panicle characteristics, such as panicle length and grain size, but grain number per panicle shows little change, indicating that the mutation of the ep2 gene could be applied in EP-type indica rice breeding
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	leaf	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	leaf	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	We obtained a mutant rela (regulator of leaf angle) with reduced leaf angle in rice by EMS mutagenesis, and map-based cloning revealed that OsRELA encodes a protein of unknown function
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	leaf	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	The binding of OsRELA can activate the expression of downstream genes repressed by OsLIC, such as OsILI1, a positive regulator of leaf inclination in rice
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	leaf	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	Therefore, our results suggest that OsRELA can act as a transcriptional regulator and is involved in the regulation of leaf inclination by regulating the transcriptional activity of OsLIC
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	map-based cloning	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	We obtained a mutant rela (regulator of leaf angle) with reduced leaf angle in rice by EMS mutagenesis, and map-based cloning revealed that OsRELA encodes a protein of unknown function
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	BR	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	Biochemical and genetic analyses revealed that OsRELA is able to interact with OsLIC, a negative regulator of BR signaling, through its conserved C-terminal domain, which is essential for OsRELA function in rice
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	BR signaling	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	Biochemical and genetic analyses revealed that OsRELA is able to interact with OsLIC, a negative regulator of BR signaling, through its conserved C-terminal domain, which is essential for OsRELA function in rice
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	transcriptional regulator	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	Therefore, our results suggest that OsRELA can act as a transcriptional regulator and is involved in the regulation of leaf inclination by regulating the transcriptional activity of OsLIC
DEP2|EP2|SRS1|OsRELA	Os07g0616000	LOC_Os07g42410	leaf angle	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	We obtained a mutant rela (regulator of leaf angle) with reduced leaf angle in rice by EMS mutagenesis, and map-based cloning revealed that OsRELA encodes a protein of unknown function
DEP3	Os06g0677000	LOC_Os06g46350	erect	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	In the current study, we characterized a novel dense and erect panicle (EP) mutant, dep3, derived from the Oryza sativa ssp
DEP3	Os06g0677000	LOC_Os06g46350	erect	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	The panicle of the dep3 mutant remained erect from flowering to full maturation, whereas the panicle of the wild type plant began to droop after flowering
DEP3	Os06g0677000	LOC_Os06g46350	erect	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)
DEP3	Os06g0677000	LOC_Os06g46350	vascular bundle	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	Anatomical observations revealed that the dep3 mutant had more small vascular bundles and a thicker culm than wild type plants, explaining the EP phenotype
DEP3	Os06g0677000	LOC_Os06g46350	vascular bundle	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	Taken together, our results indicated that the patatin-like PLA2 might play a significant role in the formation of vascular bundles, and that the dep3 mutant may provide another EP resource for rice breeding programs
DEP3	Os06g0677000	LOC_Os06g46350	yield	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)
DEP3	Os06g0677000	LOC_Os06g46350	grain yield	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)
DEP3	Os06g0677000	LOC_Os06g46350	grain	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	The dep3 mutation also regulated other panicle characteristics, including panicle length, grain shape and grain number per panicle
DEP3	Os06g0677000	LOC_Os06g46350	grain	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)
DEP3	Os06g0677000	LOC_Os06g46350	flower	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	The panicle of the dep3 mutant remained erect from flowering to full maturation, whereas the panicle of the wild type plant began to droop after flowering
DEP3	Os06g0677000	LOC_Os06g46350	grain number	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	The dep3 mutation also regulated other panicle characteristics, including panicle length, grain shape and grain number per panicle
DEP3	Os06g0677000	LOC_Os06g46350	panicle	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	In the current study, we characterized a novel dense and erect panicle (EP) mutant, dep3, derived from the Oryza sativa ssp
DEP3	Os06g0677000	LOC_Os06g46350	panicle	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	The panicle of the dep3 mutant remained erect from flowering to full maturation, whereas the panicle of the wild type plant began to droop after flowering
DEP3	Os06g0677000	LOC_Os06g46350	panicle	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	The dep3 mutation also regulated other panicle characteristics, including panicle length, grain shape and grain number per panicle
DEP3	Os06g0677000	LOC_Os06g46350	panicle	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)
DEP3	Os06g0677000	LOC_Os06g46350	breeding	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	Taken together, our results indicated that the patatin-like PLA2 might play a significant role in the formation of vascular bundles, and that the dep3 mutant may provide another EP resource for rice breeding programs
DEP3	Os06g0677000	LOC_Os06g46350	culm	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)	Anatomical observations revealed that the dep3 mutant had more small vascular bundles and a thicker culm than wild type plants, explaining the EP phenotype
DEP3	Os06g0677000	LOC_Os06g46350	grain	OrMKK3 Influences Morphology and Grain Size in Rice	Overexpression of OrMKK3 influenced the expression levels of the grain size-related genes SMG1, GW8, GL3, GW2, and DEP3
DEP3	Os06g0677000	LOC_Os06g46350	grain size	OrMKK3 Influences Morphology and Grain Size in Rice	Overexpression of OrMKK3 influenced the expression levels of the grain size-related genes SMG1, GW8, GL3, GW2, and DEP3
DEPG1|OsRP1L1	Os05g0365300	LOC_Os05g30220	leaf	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	Semi-quantitative PCR assays showed that DEPG1 is widely expressed in rice, and is preferentially expressed in internodes, leaf blades, leaf sheaths and flag leaves
DEPG1|OsRP1L1	Os05g0365300	LOC_Os05g30220	leaf	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants
DEPG1|OsRP1L1	Os05g0365300	LOC_Os05g30220	disease resistance	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	DEPG1 is a nucleotide-binding site (NBS)-leucine rich repeat (LRR) gene, and the deduced protein sequence of DEPG1 has approximately 64% identity with that of the disease resistance gene Pi37
DEPG1|OsRP1L1	Os05g0365300	LOC_Os05g30220	disease	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	DEPG1 is a nucleotide-binding site (NBS)-leucine rich repeat (LRR) gene, and the deduced protein sequence of DEPG1 has approximately 64% identity with that of the disease resistance gene Pi37
DEPG1|OsRP1L1	Os05g0365300	LOC_Os05g30220	disease	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants
DEPG1|OsRP1L1	Os05g0365300	LOC_Os05g30220	defense	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	Additionally, Xoc negatively regulates expression of DEPG1 at the early stage of the pathogen infection, and so do the three defense-signal compounds including salicylic acid (SA), methyl jasmonate (MeJA) and 1-aminocyclopropane-1-carboxylic-acid (ACC)
DEPG1|OsRP1L1	Os05g0365300	LOC_Os05g30220	jasmonate	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	Additionally, Xoc negatively regulates expression of DEPG1 at the early stage of the pathogen infection, and so do the three defense-signal compounds including salicylic acid (SA), methyl jasmonate (MeJA) and 1-aminocyclopropane-1-carboxylic-acid (ACC)
DEPG1|OsRP1L1	Os05g0365300	LOC_Os05g30220	salicylic acid	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	Additionally, Xoc negatively regulates expression of DEPG1 at the early stage of the pathogen infection, and so do the three defense-signal compounds including salicylic acid (SA), methyl jasmonate (MeJA) and 1-aminocyclopropane-1-carboxylic-acid (ACC)
DEPG1|OsRP1L1	Os05g0365300	LOC_Os05g30220	sheath	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	Semi-quantitative PCR assays showed that DEPG1 is widely expressed in rice, and is preferentially expressed in internodes, leaf blades, leaf sheaths and flag leaves
DFOT1|EMF1	Os01g0611000	LOC_Os01g42520	flower	Methylesterification of cell-wall pectin controls the diurnal flower-opening times in rice.	 Importantly, a knockout of DFOT1 showed earlier diurnal flower opening
DFOT1|EMF1	Os01g0611000	LOC_Os01g42520	flowering	Methylesterification of cell-wall pectin controls the diurnal flower-opening times in rice.	 DFOT1 is specifically expressed in the lodicules, and its expression gradually increases with the approach to flowering but decreases with flowering
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	dwarf	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	Here, we report a rice (Oryza sativa) dwarf mutant, dwarf and gladius leaf 1 (dgl1), which exhibits only minimal response to GA and BR
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	dwarf	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	In addition to the dwarf phenotype, dgl1 produces leaves with abnormally rounded tip regions
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	ga	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	Here, we report a rice (Oryza sativa) dwarf mutant, dwarf and gladius leaf 1 (dgl1), which exhibits only minimal response to GA and BR
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	ga	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	GA biosynthetic genes are up-regulated in dgl1, but the expression of BR biosynthetic genes is not enhanced
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	ga	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	The enhanced expression of GA biosynthetic genes in dgl1 is not caused by inappropriate GA signaling because the expression of these genes was repressed by GA3 treatment, and degradation of the rice DELLA protein SLR1 was triggered by GA3 in this mutant
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	ga	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	Instead, aberrant microtubule organization caused by the loss of the microtubule-severing function of DGL1 may result in enhanced expression of GA biosynthetic genes in that enhanced expression was also observed in a BR-deficient mutant with aberrant microtubule organization
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	growth	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	We prove that OsKTN80a, possibly associated with OsKTN60, is involved in root growth via regulating the cell elongation and division
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	root	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	We prove that OsKTN80a, possibly associated with OsKTN60, is involved in root growth via regulating the cell elongation and division
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	cell elongation	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	We prove that OsKTN80a, possibly associated with OsKTN60, is involved in root growth via regulating the cell elongation and division
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	gibberellin	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	These results suggest that the function of DGL1 is important for cell and organ elongation in rice, and aberrant DGL1-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	BR	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	GA biosynthetic genes are up-regulated in dgl1, but the expression of BR biosynthetic genes is not enhanced
DGL1|OsKTN60	Os01g0683100	LOC_Os01g49000	leaf	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	Here, we report a rice (Oryza sativa) dwarf mutant, dwarf and gladius leaf 1 (dgl1), which exhibits only minimal response to GA and BR
DGP1	Os01g0837600	LOC_Os01g62060	transcription factor	DEEP GREEN PANICLE1 suppresses GOLDEN2-LIKE activity to reduce chlorophyll synthesis in rice glumes.	Importantly, we found that DGP1 interacts with the rice proteins GOLDEN2-LIKE1 (OsGLK1) and GOLDEN2-LIKE2 (OsGLK2), the two transcription factors involved in the regulation of photosynthesis
DGP1	Os01g0837600	LOC_Os01g62060	photosynthesis	DEEP GREEN PANICLE1 suppresses GOLDEN2-LIKE activity to reduce chlorophyll synthesis in rice glumes.	Importantly, we found that DGP1 interacts with the rice proteins GOLDEN2-LIKE1 (OsGLK1) and GOLDEN2-LIKE2 (OsGLK2), the two transcription factors involved in the regulation of photosynthesis
DGP1	Os01g0837600	LOC_Os01g62060	photosynthesis	DEEP GREEN PANICLE1 suppresses GOLDEN2-LIKE activity to reduce chlorophyll synthesis in rice glumes.	Our results demonstrate that DGP1 is a repressor of OsGLK activity and thus photosynthesis in rice
DGP1	Os01g0837600	LOC_Os01g62060	chlorophyll content	DEEP GREEN PANICLE1 suppresses GOLDEN2-LIKE activity to reduce chlorophyll synthesis in rice glumes.	We identified the dgp1 mutant, which has increased chlorophyll content in glumes
DH1	Os02g0820500	LOC_Os02g57490	stamen	DH1, a LOB domain-like protein required for glume formation in rice	In this study, we screened 4416 lab-created T(1) rice T-DNA tagged lines and identified a mutant, designated dh1 (degenerated hull1), with phenotype of degenerated hull and naked pistils and stamens
DH1	Os02g0820500	LOC_Os02g57490	floral	DH1, a LOB domain-like protein required for glume formation in rice	The result of transformation by a fused expression vector, pDH1::GFP, revealed that DH1 had the keen spatial and temporal characteristics of expressing at axillary bud, young panicle and floral organs but not at root, leaf, node and culm, and strongly expressing at young tissues but weakly at mature organs
DH1	Os02g0820500	LOC_Os02g57490	culm	DH1, a LOB domain-like protein required for glume formation in rice	The result of transformation by a fused expression vector, pDH1::GFP, revealed that DH1 had the keen spatial and temporal characteristics of expressing at axillary bud, young panicle and floral organs but not at root, leaf, node and culm, and strongly expressing at young tissues but weakly at mature organs
DH1	Os02g0820500	LOC_Os02g57490	palea	DH1, a LOB domain-like protein required for glume formation in rice	Approximately 60% florets on the dh1 panicle defected in forming normal palea and lemma
DH1	Os02g0820500	LOC_Os02g57490	lemma	DH1, a LOB domain-like protein required for glume formation in rice	Approximately 60% florets on the dh1 panicle defected in forming normal palea and lemma
DH1	Os02g0820500	LOC_Os02g57490	leaf	DH1, a LOB domain-like protein required for glume formation in rice	The result of transformation by a fused expression vector, pDH1::GFP, revealed that DH1 had the keen spatial and temporal characteristics of expressing at axillary bud, young panicle and floral organs but not at root, leaf, node and culm, and strongly expressing at young tissues but weakly at mature organs
DH1	Os02g0820500	LOC_Os02g57490	root	DH1, a LOB domain-like protein required for glume formation in rice	The result of transformation by a fused expression vector, pDH1::GFP, revealed that DH1 had the keen spatial and temporal characteristics of expressing at axillary bud, young panicle and floral organs but not at root, leaf, node and culm, and strongly expressing at young tissues but weakly at mature organs
DH1	Os02g0820500	LOC_Os02g57490	panicle	DH1, a LOB domain-like protein required for glume formation in rice	Approximately 60% florets on the dh1 panicle defected in forming normal palea and lemma
DH1	Os02g0820500	LOC_Os02g57490	panicle	DH1, a LOB domain-like protein required for glume formation in rice	The result of transformation by a fused expression vector, pDH1::GFP, revealed that DH1 had the keen spatial and temporal characteristics of expressing at axillary bud, young panicle and floral organs but not at root, leaf, node and culm, and strongly expressing at young tissues but weakly at mature organs
DHAR1|OsDHAR1|OsDHAR	Os05g0116100	LOC_Os05g02530	seedling	Molecular cloning and characterization of a rice dehydroascorbate reductase	The mRNA level of DHAR1, the protein level of Dhar1p and the DHAR activity in rice seedlings were elevated by high temperature, suggesting the protection role of DHAR at high temperature
DHAR1|OsDHAR1|OsDHAR	Os05g0116100	LOC_Os05g02530	temperature	Molecular cloning and characterization of a rice dehydroascorbate reductase	The mRNA level of DHAR1, the protein level of Dhar1p and the DHAR activity in rice seedlings were elevated by high temperature, suggesting the protection role of DHAR at high temperature
DHAR1|OsDHAR1|OsDHAR	Os05g0116100	LOC_Os05g02530	growth	Expression of Heterologous OsDHAR Gene Improves Glutathione (GSH)-Dependent Antioxidant System and Maintenance of Cellular Redox Status in Synechococcus elongatus PCC 7942.	OsDHAR expression increased the growth of S
DHAR1|OsDHAR1|OsDHAR	Os05g0116100	LOC_Os05g02530	oxidative stress	Expression of Heterologous OsDHAR Gene Improves Glutathione (GSH)-Dependent Antioxidant System and Maintenance of Cellular Redox Status in Synechococcus elongatus PCC 7942.	japonica DHAR (OsDHAR) gene controlled by an isopropyl D-1-thiogalactopyranoside (IPTG)-inducible promoter (Ptrc) into the cyanobacterium to study the functional activities of OsDHAR under oxidative stress caused by hydrogen peroxide exposure
DHAR1|OsDHAR1|OsDHAR	Os05g0116100	LOC_Os05g02530	oxidative	Expression of Heterologous OsDHAR Gene Improves Glutathione (GSH)-Dependent Antioxidant System and Maintenance of Cellular Redox Status in Synechococcus elongatus PCC 7942.	japonica DHAR (OsDHAR) gene controlled by an isopropyl D-1-thiogalactopyranoside (IPTG)-inducible promoter (Ptrc) into the cyanobacterium to study the functional activities of OsDHAR under oxidative stress caused by hydrogen peroxide exposure
DHAR1|OsDHAR1|OsDHAR	Os05g0116100	LOC_Os05g02530	stress	Expression of Heterologous OsDHAR Gene Improves Glutathione (GSH)-Dependent Antioxidant System and Maintenance of Cellular Redox Status in Synechococcus elongatus PCC 7942.	japonica DHAR (OsDHAR) gene controlled by an isopropyl D-1-thiogalactopyranoside (IPTG)-inducible promoter (Ptrc) into the cyanobacterium to study the functional activities of OsDHAR under oxidative stress caused by hydrogen peroxide exposure
DHD1	Os11g0706200	LOC_Os11g47920	yield	DELAYED HEADING DATE1 interacts with OsHAP5C/D, delays flowering time and enhances yield in rice.	Here, we report a GRAS protein DHD1 (Delayed Heading Date1) delays heading and enhances yield in rice
DHD1	Os11g0706200	LOC_Os11g47920	nucleus	DELAYED HEADING DATE1 interacts with OsHAP5C/D, delays flowering time and enhances yield in rice.	DHD1 and OsHAP5C/D located in the nucleus and showed that rhythmic expression
DHD1	Os11g0706200	LOC_Os11g47920	heading date	DELAYED HEADING DATE1 interacts with OsHAP5C/D, delays flowering time and enhances yield in rice.	Here, we report a GRAS protein DHD1 (Delayed Heading Date1) delays heading and enhances yield in rice
DHD1	Os11g0706200	LOC_Os11g47920	heading date	DELAYED HEADING DATE1 interacts with OsHAP5C/D, delays flowering time and enhances yield in rice.	Both DHD1 and OsHAP5C/D affect heading date by regulating expression of Ehd1
DHD1	Os11g0706200	LOC_Os11g47920	heading date	DELAYED HEADING DATE1 interacts with OsHAP5C/D, delays flowering time and enhances yield in rice.	We propose that DHD1 interacts with OsHAP5C/D to delay heading date by inhibiting expression of Ehd1
DHS	Os02g0682300	LOC_Os02g45780	drought	The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular Wax Biosynthesis by Promoting the Degradation of Transcription Factor ROC4 in Rice.	The cuticular wax contents were significantly reduced in DHS overexpression plants but increased in dhs mutants compared to the wild type, which resulted in a response opposite that of drought stress
DHS	Os02g0682300	LOC_Os02g45780	stress	The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular Wax Biosynthesis by Promoting the Degradation of Transcription Factor ROC4 in Rice.	The cuticular wax contents were significantly reduced in DHS overexpression plants but increased in dhs mutants compared to the wild type, which resulted in a response opposite that of drought stress
DHS	Os02g0682300	LOC_Os02g45780	Ubiquitin	The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular Wax Biosynthesis by Promoting the Degradation of Transcription Factor ROC4 in Rice.	DHS exhibited E3 ubiquitin ligase activity and interacted with the homeodomain-leucine zipper IV protein ROC4
DHS	Os02g0682300	LOC_Os02g45780	drought stress	The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular Wax Biosynthesis by Promoting the Degradation of Transcription Factor ROC4 in Rice.	The cuticular wax contents were significantly reduced in DHS overexpression plants but increased in dhs mutants compared to the wild type, which resulted in a response opposite that of drought stress
DHT1	Os04g0636900	LOC_Os04g54440	tillering	Dwarf and High Tillering1 represses rice tillering through mediating the splicing of D14 pre-mRNA	Dwarf and High Tillering1 represses rice tillering through mediating the splicing of D14 pre-mRNA
DL	Os03g0215200	LOC_Os03g11600	leaf	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Here, we found that the genes DROOPING LEAF (DL) and OsETTIN2 (OsETT2) are involved in awn development in the awned indica strain Kasalath
DL	Os03g0215200	LOC_Os03g11600	stamen	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	Severe loss-of-function mutations of DL cause complete homeotic transformation of carpels into stamens
DL	Os03g0215200	LOC_Os03g11600	leaf	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	In this article, we report that carpel specification in the Oryza sativa (rice) flower is regulated by the floral homeotic gene DROOPING LEAF (DL) that is distinct from the well-known ABC genes
DL	Os03g0215200	LOC_Os03g11600	leaf	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	In addition, severe and weak dl alleles fail to form a midrib in the leaf
DL	Os03g0215200	LOC_Os03g11600	leaf	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	The phenotypic analysis of dl mutants, together with analyses of the spatial expression patterns and ectopic expression of DL, demonstrate that DL regulates midrib formation by promoting cell proliferation in the central region of the rice leaf
DL	Os03g0215200	LOC_Os03g11600	flower	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	In this article, we report that carpel specification in the Oryza sativa (rice) flower is regulated by the floral homeotic gene DROOPING LEAF (DL) that is distinct from the well-known ABC genes
DL	Os03g0215200	LOC_Os03g11600	flower	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	These results suggest that carpel specification is regulated by DL in rice flower development
DL	Os03g0215200	LOC_Os03g11600	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
DL	Os03g0215200	LOC_Os03g11600	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Strikingly, osmads3-4 dl-sup6 displayed a severe loss of floral meristem determinacy and produced supernumerary whorls of lodicule-like organs at the forth whorl, suggesting that OsMADS3 and DL synergistically terminate the floral meristem
DL	Os03g0215200	LOC_Os03g11600	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	These observations suggest that DL and OsMADS13 may function in the same pathway specifying the identity of carpel/ovule and floral meristem
DL	Os03g0215200	LOC_Os03g11600	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
DL	Os03g0215200	LOC_Os03g11600	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Strikingly, osmads3-4 dl-sup6 displayed a severe loss of floral meristem determinacy and produced supernumerary whorls of lodicule-like organs at the forth whorl, suggesting that OsMADS3 and DL synergistically terminate the floral meristem
DL	Os03g0215200	LOC_Os03g11600	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	These observations suggest that DL and OsMADS13 may function in the same pathway specifying the identity of carpel/ovule and floral meristem
DL	Os03g0215200	LOC_Os03g11600	meristem	Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice	Consistent with these functions, DL is initially expressed in the central region of the leaf primordia (presumptive midrib) and in the presumptive carpel primordia in the meristem
DL	Os03g0215200	LOC_Os03g11600	floral meristem	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	We also show that DL interacts antagonistically with class B genes and controls floral meristem determinacy
DL	Os03g0215200	LOC_Os03g11600	palea	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	The awn is a long needle-like appendage that, in some grass species, is formed on the lemma that encloses floral organs together with the palea
DL	Os03g0215200	LOC_Os03g11600	vascular bundle	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	OsETT2 is expressed in the awn primordium in the awned indica floret, but not in the awnless japonica floret except in the provascular bundle
DL	Os03g0215200	LOC_Os03g11600	leaf	Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice	The DROOPING LEAF (DL) gene, a member of the YABBY gene family, promotes midrib formation in the leaf and carpel specification in the flower
DL	Os03g0215200	LOC_Os03g11600	leaf	Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice	Consistent with these functions, DL is initially expressed in the central region of the leaf primordia (presumptive midrib) and in the presumptive carpel primordia in the meristem
DL	Os03g0215200	LOC_Os03g11600	leaf	Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice	4kb, and introns 1 and 2, was shown to be sufficient to induce DL in the presumptive midrib, and to suppress it in other regions in the leaf primordia
DL	Os03g0215200	LOC_Os03g11600	leaf	Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice	We modified Oryza sativa (rice) plant architecture by expressing an activated version of DL (DL-VP16) in a precise manner using the DG1 sequence: the resulting transgenic plant produced a midrib in the distal region of the leaf blade, where there is no midrib in wild type, and formed more upright leaves compared with the wild type
DL	Os03g0215200	LOC_Os03g11600	leaf	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
DL	Os03g0215200	LOC_Os03g11600	leaf	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The floral organ identity gene DROOPING LEAF (DL) was expressed ectopically in all defective organs of cfo1 flowers
DL	Os03g0215200	LOC_Os03g11600	flower	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	In the weakest mutant, dl-2, most of the flowers are normal
DL	Os03g0215200	LOC_Os03g11600	flower	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	The flower of the double mutant, spw1 dl-sup, produces incompletely differentiated organs indefinitely after palea-like organs are produced in the position where lodicules are formed in the wild-type flower
DL	Os03g0215200	LOC_Os03g11600	 awn 	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	The awn is a long needle-like appendage that, in some grass species, is formed on the lemma that encloses floral organs together with the palea
DL	Os03g0215200	LOC_Os03g11600	 awn 	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Here, we found that the genes DROOPING LEAF (DL) and OsETTIN2 (OsETT2) are involved in awn development in the awned indica strain Kasalath
DL	Os03g0215200	LOC_Os03g11600	 awn 	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Genetic analyses and RNA-silencing experiments indicate that DL and OsETT2 act independently in awn formation, and that either gene alone is not sufficient for awn development
DL	Os03g0215200	LOC_Os03g11600	 awn 	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	OsETT2 is expressed in the awn primordium in the awned indica floret, but not in the awnless japonica floret except in the provascular bundle
DL	Os03g0215200	LOC_Os03g11600	leaf	A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype	The YABBY gene DROOPING LEAF (DL) regulates midrib formation in the leaves and carpel specification in the flowers of rice (Oryza sativa L)
DL	Os03g0215200	LOC_Os03g11600	leaf	A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype	By comparing the expression levels of DL and leaf phenotypes in the dl mutants with different severities, we confirmed our previous hypothesis that DL promotes cell proliferation in the central region of leaf primordia, and that this cell proliferation is critical for midrib formation in the mature leaves
DL	Os03g0215200	LOC_Os03g11600	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
DL	Os03g0215200	LOC_Os03g11600	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Strikingly, osmads3-4 dl-sup6 displayed a severe loss of floral meristem determinacy and produced supernumerary whorls of lodicule-like organs at the forth whorl, suggesting that OsMADS3 and DL synergistically terminate the floral meristem
DL	Os03g0215200	LOC_Os03g11600	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	These observations suggest that DL and OsMADS13 may function in the same pathway specifying the identity of carpel/ovule and floral meristem
DL	Os03g0215200	LOC_Os03g11600	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Collectively, we propose a model to illustrate the role of OsMADS3, DL, and OsMADS13 in the specification of flower organ identity and meristem determinacy in rice
DL	Os03g0215200	LOC_Os03g11600	leaf	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	We analyzed recessive mutants of two homeotic genes in rice, SUPERWOMAN1 (SPW1) and DROOPING LEAF (DL)
DL	Os03g0215200	LOC_Os03g11600	leaf	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	In contrast, two strong alleles of the dl locus, drooping leaf-superman1 (dl-sup1) and drooping leaf-superman2 (dl-sup2), cause the complete transformation of the gynoecium into stamens
DL	Os03g0215200	LOC_Os03g11600	flower	Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice	The DROOPING LEAF (DL) gene, a member of the YABBY gene family, promotes midrib formation in the leaf and carpel specification in the flower
DL	Os03g0215200	LOC_Os03g11600	palea	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	The flower of the double mutant, spw1 dl-sup, produces incompletely differentiated organs indefinitely after palea-like organs are produced in the position where lodicules are formed in the wild-type flower
DL	Os03g0215200	LOC_Os03g11600	floral	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The floral organ identity gene DROOPING LEAF (DL) was expressed ectopically in all defective organs of cfo1 flowers
DL	Os03g0215200	LOC_Os03g11600	floral	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	Double mutant analysis revealed that loss of DL function mitigated some of the defects of floral organs in cfo1 flowers
DL	Os03g0215200	LOC_Os03g11600	floral	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	We propose that the CFO1 gene plays a pivotal role in maintaining floral organ identity through negative regulation of DL expression
DL	Os03g0215200	LOC_Os03g11600	flower	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Furthermore, the defects of osmads13-3 dl-sup6 flowers appeared identical to those of dl-sup6, and the OsMADS13 expression was undetectable in dl-sup6 flowers
DL	Os03g0215200	LOC_Os03g11600	flower	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Collectively, we propose a model to illustrate the role of OsMADS3, DL, and OsMADS13 in the specification of flower organ identity and meristem determinacy in rice
DL	Os03g0215200	LOC_Os03g11600	meristem	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	We also show that DL interacts antagonistically with class B genes and controls floral meristem determinacy
DL	Os03g0215200	LOC_Os03g11600	flower	A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype	The YABBY gene DROOPING LEAF (DL) regulates midrib formation in the leaves and carpel specification in the flowers of rice (Oryza sativa L)
DL	Os03g0215200	LOC_Os03g11600	architecture	Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice	We modified Oryza sativa (rice) plant architecture by expressing an activated version of DL (DL-VP16) in a precise manner using the DG1 sequence: the resulting transgenic plant produced a midrib in the distal region of the leaf blade, where there is no midrib in wild type, and formed more upright leaves compared with the wild type
DL	Os03g0215200	LOC_Os03g11600	floral	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	In this article, we report that carpel specification in the Oryza sativa (rice) flower is regulated by the floral homeotic gene DROOPING LEAF (DL) that is distinct from the well-known ABC genes
DL	Os03g0215200	LOC_Os03g11600	floral	The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa	We also show that DL interacts antagonistically with class B genes and controls floral meristem determinacy
DL	Os03g0215200	LOC_Os03g11600	stamen	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	In contrast, two strong alleles of the dl locus, drooping leaf-superman1 (dl-sup1) and drooping leaf-superman2 (dl-sup2), cause the complete transformation of the gynoecium into stamens
DL	Os03g0215200	LOC_Os03g11600	stamen	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	The intermediate allele dl-1 (T65), results in an increase in the number of stamens and stigmas, and carpels occasionally show staminoid characteristics
DL	Os03g0215200	LOC_Os03g11600	stamen	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	Based on genetic and molecular results, we postulate a model of stamen and carpel specification in rice, with DL as a novel gene controlling carpel identity and acting mutually and antagonistically to the class B gene, SPW1
DL	Os03g0215200	LOC_Os03g11600	lemma	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	The awn is a long needle-like appendage that, in some grass species, is formed on the lemma that encloses floral organs together with the palea
DL	Os03g0215200	LOC_Os03g11600	flower	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	The floral organ identity gene DROOPING LEAF (DL) was expressed ectopically in all defective organs of cfo1 flowers
DL	Os03g0215200	LOC_Os03g11600	flower	CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice	Double mutant analysis revealed that loss of DL function mitigated some of the defects of floral organs in cfo1 flowers
DL	Os03g0215200	LOC_Os03g11600	leaf	Effects of CRISPR/Cas9 generated drooping leaf (dl) alleles on midrib and carpel formations in Oryza sativa Nipponbare.	We generated drooping leaf rice mutants by CRISPR/Cas and identified two novel alleles with specific editing that allow underpinning of the function of the DL protein domain towards midrib and carpel formations
DL	Os03g0215200	LOC_Os03g11600	leaf	Effects of CRISPR/Cas9 generated drooping leaf (dl) alleles on midrib and carpel formations in Oryza sativa Nipponbare.	 The DROOPING LEAF (DL) gene plays an essential role in regulating midrib formation and carpel specification in rice and other grass species, but the specific function of DL protein domains in different developmental processes is unclear
DL	Os03g0215200	LOC_Os03g11600	leaf	Effects of CRISPR/Cas9 generated drooping leaf (dl) alleles on midrib and carpel formations in Oryza sativa Nipponbare.	 These dl mutant alleles contribute to the DL gene functional analysis and to gain insights into possible modifications of leaf architecture of rice and other grass species
DL	Os03g0215200	LOC_Os03g11600	development	Effects of CRISPR/Cas9 generated drooping leaf (dl) alleles on midrib and carpel formations in Oryza sativa Nipponbare.	 Here, we generated Nipponbare rice dl mutants using CRISPR/Cas gene editing and identified two novel dl alleles with different effects on midrib formation and carpel development
DL	Os03g0215200	LOC_Os03g11600	architecture	Effects of CRISPR/Cas9 generated drooping leaf (dl) alleles on midrib and carpel formations in Oryza sativa Nipponbare.	 These dl mutant alleles contribute to the DL gene functional analysis and to gain insights into possible modifications of leaf architecture of rice and other grass species
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	BR signaling	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	Briefly, these results demonstrated that the D62 (DLT/OsGRAS-32) not only participated in the regulation of BR signaling, but also influenced GA metabolism in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 BR 	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	Briefly, these results demonstrated that the D62 (DLT/OsGRAS-32) not only participated in the regulation of BR signaling, but also influenced GA metabolism in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	domestication	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	In addition, a ggc repeat region identified in the region that encodes the GRAS domain of GS6 played an important historic role in the domestication of grain size in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	dwarf	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	DWARF AND LOW-TILLERING (DLT) is a positive regulator that mediates several BR responses in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	tillering	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	Here, we characterized a rice dwarf and low-tillering (dlt) mutant and cloned the corresponding gene via map-based cloning
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	lamina	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	In addition, both lamina bending and coleoptile elongation assays show that dlt is insensitive or much less responsive to brassinolide (BL), the most active BR, suggesting that DLT is involved in BR signaling
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain size	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	Here, we report the identification and cloning of Grain Size 6 (GS6), which plays an important role in reducing grain size in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain size	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	In addition, a ggc repeat region identified in the region that encodes the GRAS domain of GS6 played an important historic role in the domestication of grain size in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain size	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	GS6, a member of the GRAS gene family, negatively regulates grain size in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	tillering	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	DWARF AND LOW-TILLERING (DLT) is a positive regulator that mediates several BR responses in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	BR signaling	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	In addition, both lamina bending and coleoptile elongation assays show that dlt is insensitive or much less responsive to brassinolide (BL), the most active BR, suggesting that DLT is involved in BR signaling
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	gibberellin	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	The expression levels of gibberellin (GA) biosynthetic genes including OsCPS1, OsKS1, OsKO1, OsKAO, OsGA20ox2/SD1 and OsGA2ox3 were significantly increased in d62 mutant
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 ga 	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	Briefly, these results demonstrated that the D62 (DLT/OsGRAS-32) not only participated in the regulation of BR signaling, but also influenced GA metabolism in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	panicle	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	RT-PCR analysis and promoter activity analysis showed that the D62 gene expressed in all tested tissues including roots, stems, leaves and panicles of rice plant
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	tiller	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	Here, we characterized a rice dwarf and low-tillering (dlt) mutant and cloned the corresponding gene via map-based cloning
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 BR 	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	DWARF AND LOW-TILLERING (DLT) is a positive regulator that mediates several BR responses in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 BR 	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	Suppression of DLT can enhance the phenotypes of BR receptor mutant d61-1, and overexpression of DLT obviously suppressed the BR loss-of-function phenotypes of both d61-1 and Go, suggesting that DLT functions downstream of GSK2 to modulate BR responses
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 BR 	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	These results demonstrate that DLT is a GSK2 substrate, further reinforcing that the BIN2/GSK2 kinase has multiple substrates that carry out various BR responses
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	dwarf	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	A dwarf mutant, dwarf 62 (d62), was isolated from rice cultivar 93-11 by mutagenesis with gamma-rays
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 BR 	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	In addition, both lamina bending and coleoptile elongation assays show that dlt is insensitive or much less responsive to brassinolide (BL), the most active BR, suggesting that DLT is involved in BR signaling
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 BR 	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	Consistent with this conclusion, the accumulation of transcripts of BR biosynthesis genes in the dlt mutant indicated that DLT is involved in feedback inhibition of BR biosynthesis genes
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 BR 	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	Finally, consistent with the fact that DLT is also negatively feedback-regulated by BR treatment, a gel mobility shift assay showed that OsBZR1 can bind to the DLT promoter through the BR-response element
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	brassinosteroid	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	In previous studies, the DLT/OsGRAS-32 is confirmed to play positive roles in brassinosteroid (BR) signaling
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	dwarf	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain width	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	A premature stop at the +348 position in the coding sequence (CDS) of GS6 increased grain width and weight significantly
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	endosperm	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	The d62 mutant exhibited decreased activity of alpha-amylase in endosperm and reduced content of endogenous GA(1)
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	dwarf	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	Here, we characterized a rice dwarf and low-tillering (dlt) mutant and cloned the corresponding gene via map-based cloning
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	dwarf	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	The dwarf phenotype of dlt is similar to BR-deficient or signaling mutants in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	stem	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	RT-PCR analysis and promoter activity analysis showed that the D62 gene expressed in all tested tissues including roots, stems, leaves and panicles of rice plant
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	tiller	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	DWARF AND LOW-TILLERING (DLT) is a positive regulator that mediates several BR responses in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	Here, we report the identification and cloning of Grain Size 6 (GS6), which plays an important role in reducing grain size in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	A premature stop at the +348 position in the coding sequence (CDS) of GS6 increased grain width and weight significantly
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	In addition, a ggc repeat region identified in the region that encodes the GRAS domain of GS6 played an important historic role in the domestication of grain size in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	Knowledge of the function of GS6 might aid efforts to elucidate the molecular mechanisms that control grain development and evolution in rice plants, and could facilitate the genetic improvement of rice yield
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	GS6, a member of the GRAS gene family, negatively regulates grain size in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	gibberellin	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	yield	GS6, a member of the GRAS gene family, negatively regulates grain size in rice	Knowledge of the function of GS6 might aid efforts to elucidate the molecular mechanisms that control grain development and evolution in rice plants, and could facilitate the genetic improvement of rice yield
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	root	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	RT-PCR analysis and promoter activity analysis showed that the D62 gene expressed in all tested tissues including roots, stems, leaves and panicles of rice plant
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	seedlings	Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.	 DLT physically interacts with OSH15 to co-regulate many genes in seedlings and internodes
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	BR	Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.	 OSH15 targets and promotes the expression of the BR receptor gene BR INSENSITIVE1 (OsBRI1), and DLT facilitates this regulation in a dosage-dependent manner
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	BR	Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.	 Taken together, our results suggest that DLT interacts with OSH15, which functions in the lower internodes, to modulate rice internode elongation via orchestrating BR signaling and metabolism
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	BR signaling	Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.	 Taken together, our results suggest that DLT interacts with OSH15, which functions in the lower internodes, to modulate rice internode elongation via orchestrating BR signaling and metabolism
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 BR 	Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.	 OSH15 targets and promotes the expression of the BR receptor gene BR INSENSITIVE1 (OsBRI1), and DLT facilitates this regulation in a dosage-dependent manner
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	 BR 	Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.	 Taken together, our results suggest that DLT interacts with OSH15, which functions in the lower internodes, to modulate rice internode elongation via orchestrating BR signaling and metabolism
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	internode elongation	Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.	 Taken together, our results suggest that DLT interacts with OSH15, which functions in the lower internodes, to modulate rice internode elongation via orchestrating BR signaling and metabolism
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Moreover, we found that WG3 directly interacts with DWARF AND LOW-TILLERING (DLT), a previously reported GRAS protein, and a genetic experiment demonstrated that WG3 and DLT function in a common pathway to regulate grain size
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain size	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	grain size	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Moreover, we found that WG3 directly interacts with DWARF AND LOW-TILLERING (DLT), a previously reported GRAS protein, and a genetic experiment demonstrated that WG3 and DLT function in a common pathway to regulate grain size
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	brassinosteroid	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	Brassinosteroid	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	Brassinosteroid Signaling	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.
DLT|OsGRAS-32|D62|GS6|SMOS2	Os06g0127800	LOC_Os06g03710	dwarf	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Moreover, we found that WG3 directly interacts with DWARF AND LOW-TILLERING (DLT), a previously reported GRAS protein, and a genetic experiment demonstrated that WG3 and DLT function in a common pathway to regulate grain size
DMC1A|DMC1|OsDMC1A	Os12g0143800	LOC_Os12g04980	meiosis	Filament formation and robust strand exchange activities of the rice DMC1A and DMC1B proteins	These biochemical differences between the DMC1A and DMC1B proteins may provide important insight into their functional differences during meiosis in rice
DMC1A|DMC1|OsDMC1A	Os12g0143800	LOC_Os12g04980	meiosis	Filament formation and robust strand exchange activities of the rice DMC1A and DMC1B proteins	The DMC1 protein, a meiosis-specific DNA recombinase, catalyzes strand exchange between homologous chromosomes
DMC1A|DMC1|OsDMC1A	Os12g0143800	LOC_Os12g04980	meiosis	Filament formation and robust strand exchange activities of the rice DMC1A and DMC1B proteins	These biochemical differences between the DMC1A and DMC1B proteins may provide important insight into their functional differences during meiosis in rice
DMD1	Os02g0550000	LOC_Os02g34500	transcription factor	Defective Microspore Development1 is required for microspore cell integrity and pollen wall formation in rice.	DMD1 interacts with Tapetum Degeneration Retardation (TDR), a basic helix-loop-helix transcription factor required for exine formation
DMD1	Os02g0550000	LOC_Os02g34500	development	Defective Microspore Development1 is required for microspore cell integrity and pollen wall formation in rice.	DMD1 is preferentially expressed in the tapetum and microspores during postmeiotic development
DMD1	Os02g0550000	LOC_Os02g34500	development	Defective Microspore Development1 is required for microspore cell integrity and pollen wall formation in rice.	Taken together, our results suggest that DMD1 is responsible for microspore cell integrity, primexine formation, and exine pattern formation during rice microspore development
DMD1	Os02g0550000	LOC_Os02g34500	sterile	Defective Microspore Development1 is required for microspore cell integrity and pollen wall formation in rice.	Mutations in DMD1 cause a male sterile phenotype with impaired microspore cell integrity
DMD1	Os02g0550000	LOC_Os02g34500	tapetum	Defective Microspore Development1 is required for microspore cell integrity and pollen wall formation in rice.	DMD1 is preferentially expressed in the tapetum and microspores during postmeiotic development
DMD1	Os02g0550000	LOC_Os02g34500	tapetum	Defective Microspore Development1 is required for microspore cell integrity and pollen wall formation in rice.	DMD1 interacts with Tapetum Degeneration Retardation (TDR), a basic helix-loop-helix transcription factor required for exine formation
DMD1	Os02g0550000	LOC_Os02g34500	microspore	Defective Microspore Development1 is required for microspore cell integrity and pollen wall formation in rice.	Mutations in DMD1 cause a male sterile phenotype with impaired microspore cell integrity
DMD1	Os02g0550000	LOC_Os02g34500	microspore	Defective Microspore Development1 is required for microspore cell integrity and pollen wall formation in rice.	Taken together, our results suggest that DMD1 is responsible for microspore cell integrity, primexine formation, and exine pattern formation during rice microspore development
DMD1	Os02g0550000	LOC_Os02g34500	tapetum degeneration	Defective Microspore Development1 is required for microspore cell integrity and pollen wall formation in rice.	DMD1 interacts with Tapetum Degeneration Retardation (TDR), a basic helix-loop-helix transcription factor required for exine formation
DNG701	Os05g0445900	LOC_Os05g37350	seed	A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice	Tos17 showed less transposition in calli derived from dng701 knockout mutant seeds compared with that in wild-type calli
DNL-4	Os01g0105900	LOC_Os01g01620	leaf	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	The dnl-4 mutant showed reduced plant height and leaf blade width compared to the wild type, and increased leaf inclination
DNL-4	Os01g0105900	LOC_Os01g01620	leaf	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	These results suggest that DNL-4 expression is involved in modulating plant height and leaf growth
DNL-4	Os01g0105900	LOC_Os01g01620	leaf	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	To understand DNL-4 function in rice, we analyzed the expression levels of leaf growth-related genes, such as NAL1, NAL7, and CSLD4, in the dnl-4 mutant
DNL-4	Os01g0105900	LOC_Os01g01620	leaf	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	The observation that DNL-4 expression corresponded with that of NAL1 and NAL7 is consistent with the narrow leaf phenotype of the dnl-4 mutant
DNL-4	Os01g0105900	LOC_Os01g01620	leaf	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	These results suggest that DNL-4 regulates plant height and leaf structure in rice
DNL-4	Os01g0105900	LOC_Os01g01620	growth	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	These results suggest that DNL-4 expression is involved in modulating plant height and leaf growth
DNL-4	Os01g0105900	LOC_Os01g01620	panicle	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	Furthermore, DNL-4 expression also affects productivity in rice: the dnl-4 mutant exhibited reduced panicle length and grain width compared with the wild type
DNL-4	Os01g0105900	LOC_Os01g01620	grain	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	Furthermore, DNL-4 expression also affects productivity in rice: the dnl-4 mutant exhibited reduced panicle length and grain width compared with the wild type
DNL-4	Os01g0105900	LOC_Os01g01620	height	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	The dnl-4 mutant showed reduced plant height and leaf blade width compared to the wild type, and increased leaf inclination
DNL-4	Os01g0105900	LOC_Os01g01620	height	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	These results suggest that DNL-4 expression is involved in modulating plant height and leaf growth
DNL-4	Os01g0105900	LOC_Os01g01620	height	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	These results suggest that DNL-4 regulates plant height and leaf structure in rice
DNL-4	Os01g0105900	LOC_Os01g01620	plant height	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	The dnl-4 mutant showed reduced plant height and leaf blade width compared to the wild type, and increased leaf inclination
DNL-4	Os01g0105900	LOC_Os01g01620	plant height	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	These results suggest that DNL-4 expression is involved in modulating plant height and leaf growth
DNL-4	Os01g0105900	LOC_Os01g01620	plant height	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	These results suggest that DNL-4 regulates plant height and leaf structure in rice
DNL-4	Os01g0105900	LOC_Os01g01620	Kinase	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	The morphological defects of the mutant were caused by the suppressed expression of the DNL-4 gene, which encodes a pfkB carbohydrate kinase protein
DNL-4	Os01g0105900	LOC_Os01g01620	grain width	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	Furthermore, DNL-4 expression also affects productivity in rice: the dnl-4 mutant exhibited reduced panicle length and grain width compared with the wild type
DNL-4	Os01g0105900	LOC_Os01g01620	kinase	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	The morphological defects of the mutant were caused by the suppressed expression of the DNL-4 gene, which encodes a pfkB carbohydrate kinase protein
DNL-4	Os01g0105900	LOC_Os01g01620	panicle length	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	Furthermore, DNL-4 expression also affects productivity in rice: the dnl-4 mutant exhibited reduced panicle length and grain width compared with the wild type
DNMT2	Os01g0612000	LOC_Os01g42630	seed	Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress.	The OsDnmt2 transcript levels were significantly reduced in seed stages
Docs1	Os02g0236100	LOC_Os02g14120	leaf	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	Docs1 mRNA was expressed in all tissues including roots, leaf blades and sheaths, and flowers
Docs1	Os02g0236100	LOC_Os02g14120	root	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	In this work, we report on defective in outer cell layer specification 1 (Docs1), which is involved in the specification of outer cell layers in rice roots
Docs1	Os02g0236100	LOC_Os02g14120	root	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	Docs1 was isolated by map-based cloning using a mutant (c68) defective in the outer cell layers of primary roots
Docs1	Os02g0236100	LOC_Os02g14120	root	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	Docs1 mRNA was expressed in all tissues including roots, leaf blades and sheaths, and flowers
Docs1	Os02g0236100	LOC_Os02g14120	root	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	Immunostaining with an anti-Docs1 antibody showed that Docs1 was localized at the epidermis and exodermis, depending on the root region
Docs1	Os02g0236100	LOC_Os02g14120	root	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	These results suggest that Docs1 might directly or indirectly regulate multiple genes involved in the proper development of root outer cell layers in rice
Docs1	Os02g0236100	LOC_Os02g14120	flower	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	Docs1 mRNA was expressed in all tissues including roots, leaf blades and sheaths, and flowers
Docs1	Os02g0236100	LOC_Os02g14120	primary root	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	Docs1 was isolated by map-based cloning using a mutant (c68) defective in the outer cell layers of primary roots
Docs1	Os02g0236100	LOC_Os02g14120	sheath	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	Docs1 mRNA was expressed in all tissues including roots, leaf blades and sheaths, and flowers
Docs1	Os02g0236100	LOC_Os02g14120	gravitropic response	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	All these observations add new insights into the DOCS1 gene function in gravitropic responses at several stages of plant development
Docs1	Os02g0236100	LOC_Os02g14120	root	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.
Docs1	Os02g0236100	LOC_Os02g14120	root	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	Besides the aluminum sensitivity phenotype, both docs1 mutants shared also several root phenotypes described previously: less root hairs and mixed identities of the outer cell layers
Docs1	Os02g0236100	LOC_Os02g14120	root	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	Moreover, our new results suggest that DOCS1 could also play a role in root cap development
Docs1	Os02g0236100	LOC_Os02g14120	root	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	We hypothesized these docs1 root phenotypes may affect gravity responses
Docs1	Os02g0236100	LOC_Os02g14120	root	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	Furthermore, at adult stage, the root gravitropic set angle of docs1 mutants was also affected since docs1 mutant plants displayed larger root cone angles
Docs1	Os02g0236100	LOC_Os02g14120	development	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	Moreover, our new results suggest that DOCS1 could also play a role in root cap development
Docs1	Os02g0236100	LOC_Os02g14120	development	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	All these observations add new insights into the DOCS1 gene function in gravitropic responses at several stages of plant development
Docs1	Os02g0236100	LOC_Os02g14120	aluminum	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	Besides the aluminum sensitivity phenotype, both docs1 mutants shared also several root phenotypes described previously: less root hairs and mixed identities of the outer cell layers
Docs1	Os02g0236100	LOC_Os02g14120	Kinase	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	The c68 (docs1-1) mutant possessed a nonsense mutation in the C-terminal part of the DOCS1 kinase domain
Docs1	Os02g0236100	LOC_Os02g14120	root hair	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	Besides the aluminum sensitivity phenotype, both docs1 mutants shared also several root phenotypes described previously: less root hairs and mixed identities of the outer cell layers
Docs1	Os02g0236100	LOC_Os02g14120	plant development	Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.	All these observations add new insights into the DOCS1 gene function in gravitropic responses at several stages of plant development
DP1	Os06g0136900	LOC_Os06g04540	transcription factor	An AT-hook gene is required for palea formation and floral organ number control in rice	The DP1 enhancer SDP1 was also positional cloned, and was found identical to the recently reported RETARDED PALEA1 (REP1) gene encoding a TCP family transcription factor
DP1	Os06g0136900	LOC_Os06g04540	flower	An AT-hook gene is required for palea formation and floral organ number control in rice	We identified the DP1 gene by map-based cloning and found it encodes a nuclear-localized AT-hook DNA binding protein, suggesting a grass-specific role of chromatin architecture modification in flower development
DP1	Os06g0136900	LOC_Os06g04540	sterile	An AT-hook gene is required for palea formation and floral organ number control in rice	The sterile lemma at the palea side is occasionally elongated in dp1 mutants
DP1	Os06g0136900	LOC_Os06g04540	sterile	An AT-hook gene is required for palea formation and floral organ number control in rice	Both the sterile lemma elongation and the floral organ number increase phenotype are enhanced by the mutation of an independent gene SMALL DEGENERATIVE PALEA1 (SDP1), whose single mutation causes reduced palea size
DP1	Os06g0136900	LOC_Os06g04540	floral	An AT-hook gene is required for palea formation and floral organ number control in rice	In addition, we found a floral organ number increase in dp1 mutants at low penetration
DP1	Os06g0136900	LOC_Os06g04540	floral	An AT-hook gene is required for palea formation and floral organ number control in rice	Both the sterile lemma elongation and the floral organ number increase phenotype are enhanced by the mutation of an independent gene SMALL DEGENERATIVE PALEA1 (SDP1), whose single mutation causes reduced palea size
DP1	Os06g0136900	LOC_Os06g04540	floral	An AT-hook gene is required for palea formation and floral organ number control in rice	E function and presumable A function floral homeotic genes were found suppressed in the dp1-2 mutant
DP1	Os06g0136900	LOC_Os06g04540	lemma	An AT-hook gene is required for palea formation and floral organ number control in rice	The sterile lemma at the palea side is occasionally elongated in dp1 mutants
DP1	Os06g0136900	LOC_Os06g04540	lemma	An AT-hook gene is required for palea formation and floral organ number control in rice	Both the sterile lemma elongation and the floral organ number increase phenotype are enhanced by the mutation of an independent gene SMALL DEGENERATIVE PALEA1 (SDP1), whose single mutation causes reduced palea size
DP1	Os06g0136900	LOC_Os06g04540	architecture	An AT-hook gene is required for palea formation and floral organ number control in rice	We identified the DP1 gene by map-based cloning and found it encodes a nuclear-localized AT-hook DNA binding protein, suggesting a grass-specific role of chromatin architecture modification in flower development
DP1	Os06g0136900	LOC_Os06g04540	palea	An AT-hook gene is required for palea formation and floral organ number control in rice	The depressed palea1 (dp1) mutants show a primary defect in the main structure of palea, implying that palea is a fusion between the main structure and marginal tissues on both sides
DP1	Os06g0136900	LOC_Os06g04540	palea	An AT-hook gene is required for palea formation and floral organ number control in rice	The sterile lemma at the palea side is occasionally elongated in dp1 mutants
DP1	Os06g0136900	LOC_Os06g04540	palea	An AT-hook gene is required for palea formation and floral organ number control in rice	Both the sterile lemma elongation and the floral organ number increase phenotype are enhanced by the mutation of an independent gene SMALL DEGENERATIVE PALEA1 (SDP1), whose single mutation causes reduced palea size
DP1	Os06g0136900	LOC_Os06g04540	palea	An AT-hook gene is required for palea formation and floral organ number control in rice	The DP1 enhancer SDP1 was also positional cloned, and was found identical to the recently reported RETARDED PALEA1 (REP1) gene encoding a TCP family transcription factor
DP1	Os06g0136900	LOC_Os06g04540	floral organ number	An AT-hook gene is required for palea formation and floral organ number control in rice	In addition, we found a floral organ number increase in dp1 mutants at low penetration
DP1	Os06g0136900	LOC_Os06g04540	floral organ number	An AT-hook gene is required for palea formation and floral organ number control in rice	Both the sterile lemma elongation and the floral organ number increase phenotype are enhanced by the mutation of an independent gene SMALL DEGENERATIVE PALEA1 (SDP1), whose single mutation causes reduced palea size
DP1	Os06g0136900	LOC_Os06g04540	transcription factor	An AT-hook protein DEPRESSED PALEA1 physically interacts with the TCP family transcription factor RETARDED PALEA1 in rice.	DP1 is an AT-hook protein while REP1 is a TCP transcription factor, both of which are important regulators of palea development
DP1	Os06g0136900	LOC_Os06g04540	development	An AT-hook protein DEPRESSED PALEA1 physically interacts with the TCP family transcription factor RETARDED PALEA1 in rice.	DP1 is an AT-hook protein while REP1 is a TCP transcription factor, both of which are important regulators of palea development
DP1	Os06g0136900	LOC_Os06g04540	palea	An AT-hook protein DEPRESSED PALEA1 physically interacts with the TCP family transcription factor RETARDED PALEA1 in rice.	DP1 is an AT-hook protein while REP1 is a TCP transcription factor, both of which are important regulators of palea development
DPE1	Os07g0627000	LOC_Os07g43390	starch	Plastidial Disproportionating Enzyme Participates in Starch Synthesis in Rice Endosperm by Transferring Maltooligosyl Groups from Amylose and Amylopectin to Amylopectin.	We present here the functional identification of DPE1 in storage starch synthesis in rice (Oryza sativa L
DPE1	Os07g0627000	LOC_Os07g43390	starch	Plastidial Disproportionating Enzyme Participates in Starch Synthesis in Rice Endosperm by Transferring Maltooligosyl Groups from Amylose and Amylopectin to Amylopectin.	DPE1 overexpression decreased amylose content and resulted in small and tightly packed starch granules, whereas DPE1 suppression increased amylose content and formed heterogeneous-sized, spherical, and loosely packed starch granules
DPE1	Os07g0627000	LOC_Os07g43390	starch	Plastidial Disproportionating Enzyme Participates in Starch Synthesis in Rice Endosperm by Transferring Maltooligosyl Groups from Amylose and Amylopectin to Amylopectin.	Changes in DPE1 gene expression also resulted in modifications in the thermal and pasting features of endosperm starch granules
DPE1	Os07g0627000	LOC_Os07g43390	starch	Plastidial Disproportionating Enzyme Participates in Starch Synthesis in Rice Endosperm by Transferring Maltooligosyl Groups from Amylose and Amylopectin to Amylopectin.	These findings demonstrate that DPE1 participates substantially in starch synthesis in rice endosperm by transferring maltooligosyl groups from amylose and amylopectin to amylopectin
DPE1	Os07g0627000	LOC_Os07g43390	endosperm	Plastidial Disproportionating Enzyme Participates in Starch Synthesis in Rice Endosperm by Transferring Maltooligosyl Groups from Amylose and Amylopectin to Amylopectin.	Changes in DPE1 gene expression also resulted in modifications in the thermal and pasting features of endosperm starch granules
DPE1	Os07g0627000	LOC_Os07g43390	endosperm	Plastidial Disproportionating Enzyme Participates in Starch Synthesis in Rice Endosperm by Transferring Maltooligosyl Groups from Amylose and Amylopectin to Amylopectin.	These findings demonstrate that DPE1 participates substantially in starch synthesis in rice endosperm by transferring maltooligosyl groups from amylose and amylopectin to amylopectin
DPE1	Os07g0627000	LOC_Os07g43390	starch	Pho1 cooperates with DPE1 to control short maltooligosaccharide mobilization during starch synthesis initiation in rice endosperm.	Pho1 cooperates with DPE1 to control short maltooligosaccharide mobilization during starch synthesis initiation in rice endosperm.
DPE1	Os07g0627000	LOC_Os07g43390	starch	Pho1 cooperates with DPE1 to control short maltooligosaccharide mobilization during starch synthesis initiation in rice endosperm.	 These findings show that Pho1 cooperates with DPE1 to control short MOS mobilization during starch synthesis initiation in rice endosperm
DPE1	Os07g0627000	LOC_Os07g43390	endosperm	Pho1 cooperates with DPE1 to control short maltooligosaccharide mobilization during starch synthesis initiation in rice endosperm.	 These findings show that Pho1 cooperates with DPE1 to control short MOS mobilization during starch synthesis initiation in rice endosperm
DPF	Os01g0196300	LOC_Os01g09990	blast	Diterpenoid Phytoalexin Factor, a bHLH Transcription Factor, Plays a Central Role in the Biosynthesis of Diterpenoid Phytoalexins in Rice.	DPF is expressed mainly in roots and panicles, and is inducible in leaves by blast infection, copper chloride, or UV
DPF	Os01g0196300	LOC_Os01g09990	copper	Diterpenoid Phytoalexin Factor, a bHLH Transcription Factor, Plays a Central Role in the Biosynthesis of Diterpenoid Phytoalexins in Rice.	DPF is expressed mainly in roots and panicles, and is inducible in leaves by blast infection, copper chloride, or UV
DPS1	Os05g0395300	LOC_Os05g32850	pollen	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	dps1 plants were characterized by small whitish anthers with altered cuticle morphology and absence of pollen grains
DPS1	Os05g0395300	LOC_Os05g32850	panicle	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	These results suggest that DPS1 plays a vital role in regulating ROS homeostasis, anther cuticle formation and panicle development in rice
DPS1	Os05g0395300	LOC_Os05g32850	anther	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	These results suggest that DPS1 plays a vital role in regulating ROS homeostasis, anther cuticle formation and panicle development in rice
DPS1	Os05g0395300	LOC_Os05g32850	development	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	These results suggest that DPS1 plays a vital role in regulating ROS homeostasis, anther cuticle formation and panicle development in rice
DPS1	Os05g0395300	LOC_Os05g32850	map-based cloning	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	Map-based cloning revealed that DPS1 encodes a mitochondrial-localized protein containing a cystathionine β-synthase (CBS) domain which showed the highest expression in panicles and anthers
DPS1	Os05g0395300	LOC_Os05g32850	cell death	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	Panicles of dps1 plants showed an accumulation of reactive oxygen species (ROS), lower antioxidant activity and increased programmed cell death
DPS1	Os05g0395300	LOC_Os05g32850	homeostasis	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	Global gene expression analysis in dps1 revealed that biological processes related to fatty acid metabolism and ROS homeostasis were significantly affected and the expression of key genes involved in wax and cutin biosynthesis were downregulated
DPS1	Os05g0395300	LOC_Os05g32850	cuticle	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	dps1 plants were characterized by small whitish anthers with altered cuticle morphology and absence of pollen grains
DPS1	Os05g0395300	LOC_Os05g32850	cuticle	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	These results suggest that DPS1 plays a vital role in regulating ROS homeostasis, anther cuticle formation and panicle development in rice
DPS1	Os05g0395300	LOC_Os05g32850	cutin	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	Amounts of cuticular wax and cutin were significantly reduced in dps1 anthers
DPS1	Os05g0395300	LOC_Os05g32850	cutin	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	Global gene expression analysis in dps1 revealed that biological processes related to fatty acid metabolism and ROS homeostasis were significantly affected and the expression of key genes involved in wax and cutin biosynthesis were downregulated
DPS1	Os05g0395300	LOC_Os05g32850	reactive oxygen species	Degenerated panicle and partial sterility 1 (DPS1) encodes a CBS domain containing protein required for anther cuticle and panicle development in rice.	Panicles of dps1 plants showed an accumulation of reactive oxygen species (ROS), lower antioxidant activity and increased programmed cell death
DPW	Os03g0167600	LOC_Os03g07140	sterile	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	We report here the isolation and characterization of a rice (Oryza sativa) male-sterile mutant, defective pollen wall (dpw), which displays defective anther development and degenerated pollen grains with an irregular exine
DPW	Os03g0167600	LOC_Os03g07140	sterile	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	Moreover, we demonstrate that the monocot DPW from rice complements the dicot Arabidopsis thaliana male sterile2 (ms2) mutant and is the probable ortholog of MS2
DPW	Os03g0167600	LOC_Os03g07140	microspore	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	Using map-based cloning, we identified the DPW gene, which is expressed in both tapetal cells and microspores during anther development
DPW	Os03g0167600	LOC_Os03g07140	anther	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	We report here the isolation and characterization of a rice (Oryza sativa) male-sterile mutant, defective pollen wall (dpw), which displays defective anther development and degenerated pollen grains with an irregular exine
DPW	Os03g0167600	LOC_Os03g07140	anther	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	Chemical analysis revealed that dpw anthers had a dramatic reduction in cutin monomers and an altered composition of cuticular wax, as well as soluble fatty acids and alcohols
DPW	Os03g0167600	LOC_Os03g07140	anther	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	Using map-based cloning, we identified the DPW gene, which is expressed in both tapetal cells and microspores during anther development
DPW	Os03g0167600	LOC_Os03g07140	anther	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	These data suggest that DPWs participate in a conserved step in primary fatty alcohol synthesis for anther cuticle and pollen sporopollenin biosynthesis in monocots and dicots
DPW	Os03g0167600	LOC_Os03g07140	tapetal	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	Using map-based cloning, we identified the DPW gene, which is expressed in both tapetal cells and microspores during anther development
DPW	Os03g0167600	LOC_Os03g07140	pollen	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	We report here the isolation and characterization of a rice (Oryza sativa) male-sterile mutant, defective pollen wall (dpw), which displays defective anther development and degenerated pollen grains with an irregular exine
DPW	Os03g0167600	LOC_Os03g07140	pollen	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	These data suggest that DPWs participate in a conserved step in primary fatty alcohol synthesis for anther cuticle and pollen sporopollenin biosynthesis in monocots and dicots
DPW	Os03g0167600	LOC_Os03g07140	anther development	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	We report here the isolation and characterization of a rice (Oryza sativa) male-sterile mutant, defective pollen wall (dpw), which displays defective anther development and degenerated pollen grains with an irregular exine
DPW	Os03g0167600	LOC_Os03g07140	anther development	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	Using map-based cloning, we identified the DPW gene, which is expressed in both tapetal cells and microspores during anther development
DPW	Os03g0167600	LOC_Os03g07140	grain	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	We report here the isolation and characterization of a rice (Oryza sativa) male-sterile mutant, defective pollen wall (dpw), which displays defective anther development and degenerated pollen grains with an irregular exine
DPW	Os03g0167600	LOC_Os03g07140	cuticle	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	These data suggest that DPWs participate in a conserved step in primary fatty alcohol synthesis for anther cuticle and pollen sporopollenin biosynthesis in monocots and dicots
DPW	Os03g0167600	LOC_Os03g07140	cutin	Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase	Chemical analysis revealed that dpw anthers had a dramatic reduction in cutin monomers and an altered composition of cuticular wax, as well as soluble fatty acids and alcohols
DPW2	None	LOC_Os01g70025	pollen	Defective Pollen Wall 2 (DPW2) Encodes an Acyl Transferase Required for Rice Pollen Development.	Thus, DPW2 plays a fundamental role in pollen development via the biosynthesis of key components of the anther cuticle and pollen wall
DPW2	None	LOC_Os01g70025	anther	Defective Pollen Wall 2 (DPW2) Encodes an Acyl Transferase Required for Rice Pollen Development.	Thus, DPW2 plays a fundamental role in pollen development via the biosynthesis of key components of the anther cuticle and pollen wall
DPW2	None	LOC_Os01g70025	development	Defective Pollen Wall 2 (DPW2) Encodes an Acyl Transferase Required for Rice Pollen Development.	Thus, DPW2 plays a fundamental role in pollen development via the biosynthesis of key components of the anther cuticle and pollen wall
DPW2	None	LOC_Os01g70025	cuticle	Defective Pollen Wall 2 (DPW2) Encodes an Acyl Transferase Required for Rice Pollen Development.	Thus, DPW2 plays a fundamental role in pollen development via the biosynthesis of key components of the anther cuticle and pollen wall
DPW2	None	LOC_Os01g70025	cutin	Defective Pollen Wall 2 (DPW2) Encodes an Acyl Transferase Required for Rice Pollen Development.	Compared with the wild type (WT), dpw2 anthers have increased amounts of cutin and waxes and decreased levels of lipidic and phenolic compounds
DPW2	None	LOC_Os01g70025	pollen development	Defective Pollen Wall 2 (DPW2) Encodes an Acyl Transferase Required for Rice Pollen Development.	Thus, DPW2 plays a fundamental role in pollen development via the biosynthesis of key components of the anther cuticle and pollen wall
DPW2	None	LOC_Os01g70025	pollen wall	Defective Pollen Wall 2 (DPW2) Encodes an Acyl Transferase Required for Rice Pollen Development.	Thus, DPW2 plays a fundamental role in pollen development via the biosynthesis of key components of the anther cuticle and pollen wall
DPW3|PL1	Os02g0100700	LOC_Os02g01070	anther	Defective Pollen Wall 3 (DPW3), a novel alpha integrin-like protein, is required for pollen wall formation in rice.	DPW3 is ubiquitously expressed in anther developmental stages and its protein is localized to plasma membrane, endoplasmic reticulum (ER) and Golgi
DPW3|PL1	Os02g0100700	LOC_Os02g01070	plasma membrane	Defective Pollen Wall 3 (DPW3), a novel alpha integrin-like protein, is required for pollen wall formation in rice.	DPW3 is ubiquitously expressed in anther developmental stages and its protein is localized to plasma membrane, endoplasmic reticulum (ER) and Golgi
DPW3|PL1	Os02g0100700	LOC_Os02g01070	anther development	Defective Pollen Wall 3 (DPW3), a novel alpha integrin-like protein, is required for pollen wall formation in rice.	DPW3 is ubiquitously expressed in anther developmental stages and its protein is localized to plasma membrane, endoplasmic reticulum (ER) and Golgi
DPW3|PL1	Os02g0100700	LOC_Os02g01070	pollen	A Silent Exonic Mutation in a Rice Integrin FG-GAP Repeat-Containing Gene Causes Male-Sterility by Affecting mRNA Splicing.	pl1 exhibited smaller anthers with arrested pollen development, absent Ubisch bodies, necrosis-like tapetal hypertrophy, and smooth anther cuticular surface
DPW3|PL1	Os02g0100700	LOC_Os02g01070	anther	A Silent Exonic Mutation in a Rice Integrin FG-GAP Repeat-Containing Gene Causes Male-Sterility by Affecting mRNA Splicing.	pl1 exhibited smaller anthers with arrested pollen development, absent Ubisch bodies, necrosis-like tapetal hypertrophy, and smooth anther cuticular surface
DPW3|PL1	Os02g0100700	LOC_Os02g01070	plasma membrane	A Silent Exonic Mutation in a Rice Integrin FG-GAP Repeat-Containing Gene Causes Male-Sterility by Affecting mRNA Splicing.	PL1 is highly expressed in the tapetal cells of developing anther, and its protein is co-localized with plasma membrane (PM) and endoplasmic reticulum (ER) signal
DPW3|PL1	Os02g0100700	LOC_Os02g01070	tapetal	A Silent Exonic Mutation in a Rice Integrin FG-GAP Repeat-Containing Gene Causes Male-Sterility by Affecting mRNA Splicing.	pl1 exhibited smaller anthers with arrested pollen development, absent Ubisch bodies, necrosis-like tapetal hypertrophy, and smooth anther cuticular surface
DPW3|PL1	Os02g0100700	LOC_Os02g01070	tapetal	A Silent Exonic Mutation in a Rice Integrin FG-GAP Repeat-Containing Gene Causes Male-Sterility by Affecting mRNA Splicing.	PL1 is highly expressed in the tapetal cells of developing anther, and its protein is co-localized with plasma membrane (PM) and endoplasmic reticulum (ER) signal
DPW3|PL1	Os02g0100700	LOC_Os02g01070	pollen development	A Silent Exonic Mutation in a Rice Integrin FG-GAP Repeat-Containing Gene Causes Male-Sterility by Affecting mRNA Splicing.	pl1 exhibited smaller anthers with arrested pollen development, absent Ubisch bodies, necrosis-like tapetal hypertrophy, and smooth anther cuticular surface
DRO1	Os09g0439800	LOC_Os09g26840	architecture	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle
DRO1	Os09g0439800	LOC_Os09g26840	auxin	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity
DRO1	Os09g0439800	LOC_Os09g26840	drought	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle
DRO1	Os09g0439800	LOC_Os09g26840	drought	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar
DRO1	Os09g0439800	LOC_Os09g26840	root	Dro1, a major QTL involved in deep rooting of rice under upland field conditions	The RDR QTL Dro1 (Deeper rooting 1) was mapped between the markers RM24393 and RM7424, which delimit a 608
DRO1	Os09g0439800	LOC_Os09g26840	root	Dro1, a major QTL involved in deep rooting of rice under upland field conditions	To clarify the influence of Dro1 in an upland field, the root distribution in different soil layers was quantified by means of core sampling
DRO1	Os09g0439800	LOC_Os09g26840	root	Dro1, a major QTL involved in deep rooting of rice under upland field conditions	A line homozygous for the KP allele of Dro1 (Dro1-KP) and IR64 did not differ in root dry weight in the shallow soil layers (0-25 cm), but root dry weight of Dro1-KP in deep soil layers (25-50 cm) was significantly greater than that of IR64, suggesting that Dro1 plays a crucial role in increased deep rooting under upland field conditions
DRO1	Os09g0439800	LOC_Os09g26840	root	Dro1, a major QTL involved in deep rooting of rice under upland field conditions	Dro1, a major QTL involved in deep rooting of rice under upland field conditions
DRO1	Os09g0439800	LOC_Os09g26840	cell elongation	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity
DRO1	Os09g0439800	LOC_Os09g26840	root	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle
DRO1	Os09g0439800	LOC_Os09g26840	root	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity
DRO1	Os09g0439800	LOC_Os09g26840	root	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction
DRO1	Os09g0439800	LOC_Os09g26840	root	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar
DRO1	Os09g0439800	LOC_Os09g26840	yield	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar
DRO1	Os09g0439800	LOC_Os09g26840	growth	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle
DRO1	Os09g0439800	LOC_Os09g26840	growth	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity
DRO1	Os09g0439800	LOC_Os09g26840	growth	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions	Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction
DRO1	Os09g0439800	LOC_Os09g26840	root	INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance	Rice varieties with a high and auxin-mediated transcription of DRO1 in the root tip show deeper and longer root phenotypes and are thus better adapted to drought
DRO1	Os09g0439800	LOC_Os09g26840	drought	INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance	INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance
DRO1	Os09g0439800	LOC_Os09g26840	drought	INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance	Rice varieties with a high and auxin-mediated transcription of DRO1 in the root tip show deeper and longer root phenotypes and are thus better adapted to drought
DRO1	Os09g0439800	LOC_Os09g26840	drought	INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance	In the rice Acuce, which displays DRO1-mediated drought adaptation, the INDITTO2 transposon was found to be inserted at the promoter region of the DRO1 locus
DRO1	Os09g0439800	LOC_Os09g26840	drought	INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance	Transgenesis-based insertion of the INDITTO2 transposon into the DRO1 promoter of the non-adapted rice variety Nipponbare was sufficient to promote its drought avoidance
DRO1	Os09g0439800	LOC_Os09g26840	root	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)
DRO1	Os09g0439800	LOC_Os09g26840	growth	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)
DRO1	Os09g0439800	LOC_Os09g26840	drought	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)
DRO1	Os09g0439800	LOC_Os09g26840	drought	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	The information on structural variations in DRO1 gene will be very useful for the breeders, especially in the light of recent breeding programmes on improving drought tolerance using several DTY donors and upland accessions
DRO1	Os09g0439800	LOC_Os09g26840	tolerance	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)
DRO1	Os09g0439800	LOC_Os09g26840	tolerance	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	The information on structural variations in DRO1 gene will be very useful for the breeders, especially in the light of recent breeding programmes on improving drought tolerance using several DTY donors and upland accessions
DRO1	Os09g0439800	LOC_Os09g26840	drought tolerance	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)
DRO1	Os09g0439800	LOC_Os09g26840	drought tolerance	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	The information on structural variations in DRO1 gene will be very useful for the breeders, especially in the light of recent breeding programmes on improving drought tolerance using several DTY donors and upland accessions
DRO1	Os09g0439800	LOC_Os09g26840	breeding	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	The information on structural variations in DRO1 gene will be very useful for the breeders, especially in the light of recent breeding programmes on improving drought tolerance using several DTY donors and upland accessions
DRO1	Os09g0439800	LOC_Os09g26840	root growth	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)	Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice ( Oryza sativa L.)
DROT1	Os10g0497700	LOC_Os10g35460	transcription factor	Natural variation of DROT1 confers drought adaptation in upland rice.	 DROT1 is specifically expressed in vascular bundles and is directly repressed by ERF3 and activated by ERF71, both drought-responsive transcription factors
DROT1	Os10g0497700	LOC_Os10g35460	vascular bundle	Natural variation of DROT1 confers drought adaptation in upland rice.	 DROT1 is specifically expressed in vascular bundles and is directly repressed by ERF3 and activated by ERF71, both drought-responsive transcription factors
DROT1	Os10g0497700	LOC_Os10g35460	resistance	Natural variation of DROT1 confers drought adaptation in upland rice.	 DROT1 improves drought resistance by adjusting cell wall structure by increasing cellulose content and maintaining cellulose crystallinity
DROT1	Os10g0497700	LOC_Os10g35460	resistance	Natural variation of DROT1 confers drought adaptation in upland rice.	 A C-to-T single-nucleotide variation in the promoter increases DROT1 expression and drought resistance in upland rice
DROT1	Os10g0497700	LOC_Os10g35460	drought	Natural variation of DROT1 confers drought adaptation in upland rice.	Natural variation of DROT1 confers drought adaptation in upland rice.
DROT1	Os10g0497700	LOC_Os10g35460	drought	Natural variation of DROT1 confers drought adaptation in upland rice.	 DROT1 improves drought resistance by adjusting cell wall structure by increasing cellulose content and maintaining cellulose crystallinity
DROT1	Os10g0497700	LOC_Os10g35460	drought	Natural variation of DROT1 confers drought adaptation in upland rice.	 A C-to-T single-nucleotide variation in the promoter increases DROT1 expression and drought resistance in upland rice
DROT1	Os10g0497700	LOC_Os10g35460	cellulose	Natural variation of DROT1 confers drought adaptation in upland rice.	 DROT1 improves drought resistance by adjusting cell wall structure by increasing cellulose content and maintaining cellulose crystallinity
DROT1	Os10g0497700	LOC_Os10g35460	cell wall	Natural variation of DROT1 confers drought adaptation in upland rice.	 DROT1 improves drought resistance by adjusting cell wall structure by increasing cellulose content and maintaining cellulose crystallinity
DROT1	Os10g0497700	LOC_Os10g35460	drought resistance	Natural variation of DROT1 confers drought adaptation in upland rice.	 DROT1 improves drought resistance by adjusting cell wall structure by increasing cellulose content and maintaining cellulose crystallinity
DROT1	Os10g0497700	LOC_Os10g35460	drought resistance	Natural variation of DROT1 confers drought adaptation in upland rice.	 A C-to-T single-nucleotide variation in the promoter increases DROT1 expression and drought resistance in upland rice
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	growth	The Rice Receptor-like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization in Reproductive Development.	A phenotypic comparison of mutants expressing different amounts of DRUS1 and 2 revealed that reproductive growth requires a threshold level of DRUS1/2 proteins
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	reproductive	The Rice Receptor-like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization in Reproductive Development.	A phenotypic comparison of mutants expressing different amounts of DRUS1 and 2 revealed that reproductive growth requires a threshold level of DRUS1/2 proteins
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	sugar	The Rice Receptor-like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization in Reproductive Development.	DRUS1 and 2 maintain cell viability by repressing protease-mediated cell degradation and likely by affecting sugar utilization or conversion
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	reproductive growth	The Rice Receptor-like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization in Reproductive Development.	A phenotypic comparison of mutants expressing different amounts of DRUS1 and 2 revealed that reproductive growth requires a threshold level of DRUS1/2 proteins
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	tillering	Two FERONIA-like receptor (FLR) genes are required to maintain architecture, fertility, and seed yield in rice	 We observed that both FLR1 and FLR2 were involved in tillering of rice, but at different levels
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	development	Two FERONIA-like receptor (FLR) genes are required to maintain architecture, fertility, and seed yield in rice	 Interestingly, FLR1 and FLR2 showed different functions related to fertility, and FLR1 might be specifically involved in rice male gametophyte development
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	yield	Two FERONIA-like receptor (FLR) genes are required to maintain architecture, fertility, and seed yield in rice	 In this study, we generated flr1 and flr2 T-DNA insertion null mutants and investigated potential role of FLRs in rice yield
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	yield	Two FERONIA-like receptor (FLR) genes are required to maintain architecture, fertility, and seed yield in rice	 With these similar but different functions, we suggest that FLR1 and FLR2 might function in complementary ways to regulate the yield of rice
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	development	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 To elucidate the possible mechanism underlying this phenomenon, we found that FLR1 was constitutively expressed during endosperm development
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	grain	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 flr1 mutants had a higher cell number and an accelerated rate of grain filling compared to wild-type plants, which led to grains with greater widths
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	grain	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 A mechanism underlying the regulation of grain size by FLR1 is that FLR1 is associated with OsRac1 Rho-like GTPase, a positive regulator of grain size
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	grain	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 Regarding grain quality, the flr1 mutant had a higher percentage of chalkiness compared with wild-type plants, and seeds carrying mutations in flr3 and flr14 had endosperms with white floury cores
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	starch	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 RNA-seq analysis identified 2,367 genes that were differentially expressed in the flr1 mutant, including genes involved in starch and sucrose metabolism and carbon fixation
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	grain size	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 A mechanism underlying the regulation of grain size by FLR1 is that FLR1 is associated with OsRac1 Rho-like GTPase, a positive regulator of grain size
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	endosperm	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 To elucidate the possible mechanism underlying this phenomenon, we found that FLR1 was constitutively expressed during endosperm development
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	grain filling	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 flr1 mutants had a higher cell number and an accelerated rate of grain filling compared to wild-type plants, which led to grains with greater widths
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	chalkiness	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 Regarding grain quality, the flr1 mutant had a higher percentage of chalkiness compared with wild-type plants, and seeds carrying mutations in flr3 and flr14 had endosperms with white floury cores
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	endosperm development	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 To elucidate the possible mechanism underlying this phenomenon, we found that FLR1 was constitutively expressed during endosperm development
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	sucrose	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 RNA-seq analysis identified 2,367 genes that were differentially expressed in the flr1 mutant, including genes involved in starch and sucrose metabolism and carbon fixation
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	grain quality	Roles of FERONIA-like receptor genes in regulating grain size and quality in rice	 Regarding grain quality, the flr1 mutant had a higher percentage of chalkiness compared with wild-type plants, and seeds carrying mutations in flr3 and flr14 had endosperms with white floury cores
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	resistance	FERONIA-like receptor 1-mediated calcium ion homeostasis is involved in the immune response.	 In the present study, we found that FERONIA-like receptor 1 (FLR1) positively regulates Magnaporthe oryzae resistance and that expression of FLR1 is strongly induced in response to Ca(2+) deficiency
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	magnaporthe oryzae	FERONIA-like receptor 1-mediated calcium ion homeostasis is involved in the immune response.	 In the present study, we found that FERONIA-like receptor 1 (FLR1) positively regulates Magnaporthe oryzae resistance and that expression of FLR1 is strongly induced in response to Ca(2+) deficiency
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	homeostasis	FERONIA-like receptor 1-mediated calcium ion homeostasis is involved in the immune response.	 Moreover, RNA sequencing revealed 2,697 differentially expressed genes (DEGs) in the flr1 mutant compared with wild-type, and some of these DEGs are involved in cellular metal ion homeostasis and transition metal ion homeostasis
DRUS1|FLR1	Os03g0333200	LOC_Os03g21540	homeostasis	FERONIA-like receptor 1-mediated calcium ion homeostasis is involved in the immune response.	 Changes in expression of overlapping genes between the flr1 mutant and in plants under low-Ca(2+) treatment were consistent in terms of direction, indicating that FLR1 is involved in Ca(2+) homeostasis
DRUS2|FLR2	Os01g0769700	LOC_Os01g56330	sterile	The Rice Receptor-like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization in Reproductive Development.	A drus1-1 drus2 double knockout mutant, but not either single mutant, showed extreme dwarfism and barren inflorescences that harbored sterile spikelets
DRUS2|FLR2	Os01g0769700	LOC_Os01g56330	tillering	Two FERONIA-like receptor (FLR) genes are required to maintain architecture, fertility, and seed yield in rice	We observed that both FLR1 and FLR2 were involved in tillering of rice, but at different levels
DRUS2|FLR2	Os01g0769700	LOC_Os01g56330	development	Two FERONIA-like receptor (FLR) genes are required to maintain architecture, fertility, and seed yield in rice	Interestingly, FLR1 and FLR2 showed different functions related to fertility, and FLR1 might be specifically involved in rice male gametophyte development
DRUS2|FLR2	Os01g0769700	LOC_Os01g56330	yield	Two FERONIA-like receptor (FLR) genes are required to maintain architecture, fertility, and seed yield in rice	In this study, we generated flr1 and flr2 T-DNA insertion null mutants and investigated potential role of FLRs in rice yield
DRUS2|FLR2	Os01g0769700	LOC_Os01g56330	yield	Two FERONIA-like receptor (FLR) genes are required to maintain architecture, fertility, and seed yield in rice	With these similar but different functions, we suggest that FLR1 and FLR2 might function in complementary ways to regulate the yield of rice
DSH1	Os06g0226950	LOC_Os06g12250	fertility	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in fertility	Repression of DSH1 expression by the antisense gene or RNA interference (RNAi) resulted in a severe reduction of fertility
DSH1	Os06g0226950	LOC_Os06g12250	fertility	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in fertility	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in fertility
DSH1	Os06g0226950	LOC_Os06g12250	reproductive	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in fertility	Our results indicate that the product of DSH1 may be involved in plant viability or reproductive processes, and that the phenotype of sterility is apparently caused by loss of function of DSH1 in the stigma
DSH1	Os06g0226950	LOC_Os06g12250	meristem	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in fertility	The DSH1 gene was specifically and abundantly expressed in vascular bundles and apical meristems
DSH1	Os06g0226950	LOC_Os06g12250	meristem	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in fertility	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in fertility
DSH1	Os06g0226950	LOC_Os06g12250	vascular bundle	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in fertility	The DSH1 gene was specifically and abundantly expressed in vascular bundles and apical meristems
DSH1	Os06g0226950	LOC_Os06g12250	sterility	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in fertility	Our results indicate that the product of DSH1 may be involved in plant viability or reproductive processes, and that the phenotype of sterility is apparently caused by loss of function of DSH1 in the stigma
DSH5	Os01g0658600	LOC_Os01g46940	leaf	DSH5, a dihydrosphingosine C4 hydroxylase gene family member, shows spatially restricted expression in rice and is lethal when expressed ectopically.	Ectopic expression of DSH5 induced a dwarf phenotype characterized by severe growth inhibition and an increase in the thickness of the leaf body caused by enlargement of bulliform cells in the leaves
DSH5	Os01g0658600	LOC_Os01g46940	vascular bundle	DSH5, a dihydrosphingosine C4 hydroxylase gene family member, shows spatially restricted expression in rice and is lethal when expressed ectopically.	DSH5 expression was specifically in vascular bundle tissues
DSH5	Os01g0658600	LOC_Os01g46940	growth	DSH5, a dihydrosphingosine C4 hydroxylase gene family member, shows spatially restricted expression in rice and is lethal when expressed ectopically.	Ectopic expression of DSH5 induced a dwarf phenotype characterized by severe growth inhibition and an increase in the thickness of the leaf body caused by enlargement of bulliform cells in the leaves
DSH5	Os01g0658600	LOC_Os01g46940	dwarf	DSH5, a dihydrosphingosine C4 hydroxylase gene family member, shows spatially restricted expression in rice and is lethal when expressed ectopically.	Ectopic expression of DSH5 induced a dwarf phenotype characterized by severe growth inhibition and an increase in the thickness of the leaf body caused by enlargement of bulliform cells in the leaves
DSL1	Os04g0409600	LOC_Os04g33480	leaf	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	Some of the observed morphological defects were related to a reduction in cell numbers, in addition to reduced cell division in leaf primordia revealed by in situ hybridization analysis, suggesting the possibility that DSL1 is involved in cell division control
DSL1	Os04g0409600	LOC_Os04g33480	vascular bundle	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	The mutant showed pleiotropic defects in both vegetative and reproductive development; for example, dsl1 produced short and narrow leaves, accompanied with a reduction in the number and size of vascular bundles
DSL1	Os04g0409600	LOC_Os04g33480	spikelet	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	Inflorescence and spikelet development were also affected by the dsl1 mutation
DSL1	Os04g0409600	LOC_Os04g33480	development	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	Inflorescence and spikelet development were also affected by the dsl1 mutation
DSL1	Os04g0409600	LOC_Os04g33480	development	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	Collectively, our study shows that the HDAC DSL1 plays diverse and important roles in development in rice
DSL1	Os04g0409600	LOC_Os04g33480	potassium	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	Gene cloning revealed that DSL1 encodes an HDAC belonging to the Reduced potassium dependence3/Histone Deacetylase1 (RPD3/HDA1) family
DSL1	Os04g0409600	LOC_Os04g33480	cell division	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	Some of the observed morphological defects were related to a reduction in cell numbers, in addition to reduced cell division in leaf primordia revealed by in situ hybridization analysis, suggesting the possibility that DSL1 is involved in cell division control
DSL1	Os04g0409600	LOC_Os04g33480	vegetative	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	The mutant showed pleiotropic defects in both vegetative and reproductive development; for example, dsl1 produced short and narrow leaves, accompanied with a reduction in the number and size of vascular bundles
DSL1	Os04g0409600	LOC_Os04g33480	inflorescence	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	Inflorescence and spikelet development were also affected by the dsl1 mutation
DSL1	Os04g0409600	LOC_Os04g33480	reproductive	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	The mutant showed pleiotropic defects in both vegetative and reproductive development; for example, dsl1 produced short and narrow leaves, accompanied with a reduction in the number and size of vascular bundles
DSL1	Os04g0409600	LOC_Os04g33480	spikelet development	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	Inflorescence and spikelet development were also affected by the dsl1 mutation
DSL1	Os04g0409600	LOC_Os04g33480	reproductive development	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	The mutant showed pleiotropic defects in both vegetative and reproductive development; for example, dsl1 produced short and narrow leaves, accompanied with a reduction in the number and size of vascular bundles
DSM1	Os02g0743500	LOC_Os02g50970	panicle	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	Two allelic dsm1 mutants were more sensitive than wild-type plants to drought stress at both seedling and panicle development stages
DSM1	Os02g0743500	LOC_Os02g50970	oxidative	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	Peroxidase activity, electrolyte leakage, chlorophyll content, and 3,3'-diaminobenzidine staining revealed that the dsm1 mutant was more sensitive to oxidative stress due to an increase in ROS damage caused by the reduced POX activity
DSM1	Os02g0743500	LOC_Os02g50970	seedling	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	Two allelic dsm1 mutants were more sensitive than wild-type plants to drought stress at both seedling and panicle development stages
DSM1	Os02g0743500	LOC_Os02g50970	seedling	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	Overexpression of DSM1 in rice increased the tolerance to dehydration stress at the seedling stage
DSM1	Os02g0743500	LOC_Os02g50970	drought resistance	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice
DSM1	Os02g0743500	LOC_Os02g50970	salt	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	By real-time PCR analysis, the DSM1 gene was induced by salt, drought, and abscisic acid, but not by cold
DSM1	Os02g0743500	LOC_Os02g50970	drought	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	We identified a drought-hypersensitive mutant (drought-hypersensitive mutant1 [dsm1]) of a putative MAPK kinase kinase (MAPKKK) gene in rice (Oryza sativa)
DSM1	Os02g0743500	LOC_Os02g50970	drought	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	Two allelic dsm1 mutants were more sensitive than wild-type plants to drought stress at both seedling and panicle development stages
DSM1	Os02g0743500	LOC_Os02g50970	drought	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	The dsm1 mutants lost water more rapidly than wild-type plants under drought stress, which was in agreement with the increased drought-sensitivity phenotype of the mutant plants
DSM1	Os02g0743500	LOC_Os02g50970	drought	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	DSM1-RNA interference lines were also hypersensitive to drought stress
DSM1	Os02g0743500	LOC_Os02g50970	drought	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	By real-time PCR analysis, the DSM1 gene was induced by salt, drought, and abscisic acid, but not by cold
DSM1	Os02g0743500	LOC_Os02g50970	drought	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	Together, these results suggest that DSM1 might be a novel MAPKKK functioning as an early signaling component in regulating responses to drought stress by regulating scavenging of ROS in rice
DSM1	Os02g0743500	LOC_Os02g50970	drought	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice	A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice
DSM2	Os03g0125100	LOC_Os03g03370	drought	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	To identify critical genes for drought resistance in rice (Oryza sativa), we screened T-DNA mutants and identified a drought-hypersensitive mutant, dsm2
DSM2	Os03g0125100	LOC_Os03g03370	drought	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	The amounts of zeaxanthin and ABA were significantly reduced in two allelic dsm2 mutants after drought stress compared with the wild type
DSM2	Os03g0125100	LOC_Os03g03370	drought	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	Overexpression of DSM2 in rice resulted in significantly increased resistance to drought and oxidative stresses and increases of the xanthophylls and nonphotochemical quenching
DSM2	Os03g0125100	LOC_Os03g03370	drought	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	We conclude that the DSM2 gene significantly contributes to control of the xanthophyll cycle and ABA synthesis, both of which play critical roles in the establishment of drought resistance in rice
DSM2	Os03g0125100	LOC_Os03g03370	drought	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice
DSM2	Os03g0125100	LOC_Os03g03370	drought resistance	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	To identify critical genes for drought resistance in rice (Oryza sativa), we screened T-DNA mutants and identified a drought-hypersensitive mutant, dsm2
DSM2	Os03g0125100	LOC_Os03g03370	drought resistance	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	We conclude that the DSM2 gene significantly contributes to control of the xanthophyll cycle and ABA synthesis, both of which play critical roles in the establishment of drought resistance in rice
DSM2	Os03g0125100	LOC_Os03g03370	ABA	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	The amounts of zeaxanthin and ABA were significantly reduced in two allelic dsm2 mutants after drought stress compared with the wild type
DSM2	Os03g0125100	LOC_Os03g03370	ABA	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	We conclude that the DSM2 gene significantly contributes to control of the xanthophyll cycle and ABA synthesis, both of which play critical roles in the establishment of drought resistance in rice
DSM2	Os03g0125100	LOC_Os03g03370	chloroplast	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	DSM2 is a chloroplast protein, and the response of DSM2 to environmental stimuli is distinctive from the other two BCH members in rice
DSM2	Os03g0125100	LOC_Os03g03370	oxidative	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	Overexpression of DSM2 in rice resulted in significantly increased resistance to drought and oxidative stresses and increases of the xanthophylls and nonphotochemical quenching
DSM2	Os03g0125100	LOC_Os03g03370	oxidative	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	salt	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	), we screened T-DNA mutants and identified a drought- and salt-hypersensitive mutant dsm3
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	salt	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	Interestingly, overexpression of DSM3 (OsITPK2) in rice resulted in drought- and salt-hypersensitive phenotypes and physiological changes similar to those in the mutant
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	salt	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	The expression level of DSM3 promoter-driven beta-glucuronidase (GUS) reporter gene in rice was induced by drought, salt and abscisic acid
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	salt	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	These results together suggest that DSM3/OsITPK2 is an important member of the OsITPK family for stress responses, and an optimal expression level is essential for drought and salt tolerance in rice
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	salt	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	Interestingly, overexpression of DSM3 (OsITPK2) in rice resulted in drought- and salt-hypersensitive phenotypes and physiological changes similar to those in the mutant
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	salt	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	These results together suggest that DSM3/OsITPK2 is an important member of the OsITPK family for stress responses, and an optimal expression level is essential for drought and salt tolerance in rice
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	salinity	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	Transcript level analysis of OsITPK genes revealed that they had different tempo-spatial expression patterns, and the responses of DSM3 to abiotic stresses, including drought, salinity, cold, and high temperature, were distinct from the other five members in rice
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	salt tolerance	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	These results together suggest that DSM3/OsITPK2 is an important member of the OsITPK family for stress responses, and an optimal expression level is essential for drought and salt tolerance in rice
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	drought	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	Interestingly, overexpression of DSM3 (OsITPK2) in rice resulted in drought- and salt-hypersensitive phenotypes and physiological changes similar to those in the mutant
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	drought	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	These results together suggest that DSM3/OsITPK2 is an important member of the OsITPK family for stress responses, and an optimal expression level is essential for drought and salt tolerance in rice
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	drought	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	), we screened T-DNA mutants and identified a drought- and salt-hypersensitive mutant dsm3
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	drought	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	Interestingly, overexpression of DSM3 (OsITPK2) in rice resulted in drought- and salt-hypersensitive phenotypes and physiological changes similar to those in the mutant
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	drought	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	The expression level of DSM3 promoter-driven beta-glucuronidase (GUS) reporter gene in rice was induced by drought, salt and abscisic acid
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	drought	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	Transcript level analysis of OsITPK genes revealed that they had different tempo-spatial expression patterns, and the responses of DSM3 to abiotic stresses, including drought, salinity, cold, and high temperature, were distinct from the other five members in rice
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	drought	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	These results together suggest that DSM3/OsITPK2 is an important member of the OsITPK family for stress responses, and an optimal expression level is essential for drought and salt tolerance in rice
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	abiotic stress	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	Transcript level analysis of OsITPK genes revealed that they had different tempo-spatial expression patterns, and the responses of DSM3 to abiotic stresses, including drought, salinity, cold, and high temperature, were distinct from the other five members in rice
DSM3|OsITPK2	Os03g0230500	LOC_Os03g12840	temperature	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice	Transcript level analysis of OsITPK genes revealed that they had different tempo-spatial expression patterns, and the responses of DSM3 to abiotic stresses, including drought, salinity, cold, and high temperature, were distinct from the other five members in rice
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	salt tolerance	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Here, we clone and characterize DST (drought and salt tolerance)-a previously unknown zinc finger transcription factor that negatively regulates stomatal closure by direct modulation of genes related to H(2)O(2) homeostasis-and identify a novel pathway for the signal transduction of DST-mediated H(2)O(2)-induced stomatal closure
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	salt tolerance	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Loss of DST function increases stomatal closure and reduces stomatal density, consequently resulting in enhanced drought and salt tolerance in rice
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	salt tolerance	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	grain number	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	meristem	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	meristem	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	meristem	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Our study reveals that, as a unique regulator of reproductive meristem activity, DST may be explored to facilitate the genetic enhancement of grain production in rice and other small grain cereals
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	salt	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	salt	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Here, we clone and characterize DST (drought and salt tolerance)-a previously unknown zinc finger transcription factor that negatively regulates stomatal closure by direct modulation of genes related to H(2)O(2) homeostasis-and identify a novel pathway for the signal transduction of DST-mediated H(2)O(2)-induced stomatal closure
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	salt	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Loss of DST function increases stomatal closure and reduces stomatal density, consequently resulting in enhanced drought and salt tolerance in rice
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	salt	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomatal	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Here, we clone and characterize DST (drought and salt tolerance)-a previously unknown zinc finger transcription factor that negatively regulates stomatal closure by direct modulation of genes related to H(2)O(2) homeostasis-and identify a novel pathway for the signal transduction of DST-mediated H(2)O(2)-induced stomatal closure
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomatal	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Loss of DST function increases stomatal closure and reduces stomatal density, consequently resulting in enhanced drought and salt tolerance in rice
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomatal	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	grain	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	grain	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Importantly, the DST(reg1) allele provides an approach to pyramid the Gn1a-dependent and Gn1a-independent effects on grain production
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	grain	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Our study reveals that, as a unique regulator of reproductive meristem activity, DST may be explored to facilitate the genetic enhancement of grain production in rice and other small grain cereals
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	grain	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	reproductive	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	reproductive	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	DST-directed expression of OsCKX2 regulates CK accumulation in the SAM and, therefore, controls the number of the reproductive organs
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	reproductive	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	reproductive	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Our study reveals that, as a unique regulator of reproductive meristem activity, DST may be explored to facilitate the genetic enhancement of grain production in rice and other small grain cereals
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	drought	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	oxidative	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	branching	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	salt tolerance	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	drought	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomata	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Here, we clone and characterize DST (drought and salt tolerance)-a previously unknown zinc finger transcription factor that negatively regulates stomatal closure by direct modulation of genes related to H(2)O(2) homeostasis-and identify a novel pathway for the signal transduction of DST-mediated H(2)O(2)-induced stomatal closure
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomata	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Loss of DST function increases stomatal closure and reduces stomatal density, consequently resulting in enhanced drought and salt tolerance in rice
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomata	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	drought	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Here, we clone and characterize DST (drought and salt tolerance)-a previously unknown zinc finger transcription factor that negatively regulates stomatal closure by direct modulation of genes related to H(2)O(2) homeostasis-and identify a novel pathway for the signal transduction of DST-mediated H(2)O(2)-induced stomatal closure
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	drought	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Loss of DST function increases stomatal closure and reduces stomatal density, consequently resulting in enhanced drought and salt tolerance in rice
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	drought	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	Expression of DST, a reported zinc finger gene negatively regulating H(2)O(2)-induced stomatal closure, and the activity of H(2)O(2)-scavenging related enzymes were significantly suppressed, and H(2)O(2) in guard cells was accumulated in the overexpression lines
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	Expression of DST, a reported zinc finger gene negatively regulating H(2)O(2)-induced stomatal closure, and the activity of H(2)O(2)-scavenging related enzymes were significantly suppressed, and H(2)O(2) in guard cells was accumulated in the overexpression lines
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	transcription factor	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	panicle	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	homeostasis	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Here, we clone and characterize DST (drought and salt tolerance)-a previously unknown zinc finger transcription factor that negatively regulates stomatal closure by direct modulation of genes related to H(2)O(2) homeostasis-and identify a novel pathway for the signal transduction of DST-mediated H(2)O(2)-induced stomatal closure
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	transcription factor	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Here, we clone and characterize DST (drought and salt tolerance)-a previously unknown zinc finger transcription factor that negatively regulates stomatal closure by direct modulation of genes related to H(2)O(2) homeostasis-and identify a novel pathway for the signal transduction of DST-mediated H(2)O(2)-induced stomatal closure
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	drought sensitivity	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	drought	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	spikelet	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	spikelet	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.	 Phenotypic analyses revealed that OsMED25-RNAi and the osmed25 mutant plants exhibited enlarged panicles, with enhanced branching and spikelet number, similar to the dst mutant
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	spikelet	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.	 Thus, OsMED25 was involved in the communication between DST and Pol II general transcriptional machinery to regulate spikelet number
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	spikelet number	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	spikelet number	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.	 Phenotypic analyses revealed that OsMED25-RNAi and the osmed25 mutant plants exhibited enlarged panicles, with enhanced branching and spikelet number, similar to the dst mutant
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	spikelet number	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.	 Thus, OsMED25 was involved in the communication between DST and Pol II general transcriptional machinery to regulate spikelet number
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	branching	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.	 Phenotypic analyses revealed that OsMED25-RNAi and the osmed25 mutant plants exhibited enlarged panicles, with enhanced branching and spikelet number, similar to the dst mutant
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	leaf	The APC/CTAD1-WIDE LEAF 1-NARROW LEAF 1 pathway controls leaf width in rice.	 Interestingly, we found that WL1 negatively regulated the expression of a narrow leaf gene, NARROW LEAF 1 (NAL1), by recruiting the co-repressor TOPLESS-RELATED PROTEIN and directly binding to the NAL1 regulatory region to inhibit its expression by reducing the chromatin histone acetylation
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	tillering	The APC/CTAD1-WIDE LEAF 1-NARROW LEAF 1 pathway controls leaf width in rice.	 WL1 encodes a Cys-2/His-2-type (C2H2) zinc finger protein that interacts with Tillering and Dwarf 1 (TAD1), a co-activator of the anaphase-promoting complex/cyclosome (APC/C) (a multi-subunit E3 ligase)
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	R protein	The APC/CTAD1-WIDE LEAF 1-NARROW LEAF 1 pathway controls leaf width in rice.	 WL1 encodes a Cys-2/His-2-type (C2H2) zinc finger protein that interacts with Tillering and Dwarf 1 (TAD1), a co-activator of the anaphase-promoting complex/cyclosome (APC/C) (a multi-subunit E3 ligase)
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	zinc	The APC/CTAD1-WIDE LEAF 1-NARROW LEAF 1 pathway controls leaf width in rice.	 WL1 encodes a Cys-2/His-2-type (C2H2) zinc finger protein that interacts with Tillering and Dwarf 1 (TAD1), a co-activator of the anaphase-promoting complex/cyclosome (APC/C) (a multi-subunit E3 ligase)
DST|WL1|HST1	Os03g0786400	LOC_Os03g57240	dwarf	The APC/CTAD1-WIDE LEAF 1-NARROW LEAF 1 pathway controls leaf width in rice.	 WL1 encodes a Cys-2/His-2-type (C2H2) zinc finger protein that interacts with Tillering and Dwarf 1 (TAD1), a co-activator of the anaphase-promoting complex/cyclosome (APC/C) (a multi-subunit E3 ligase)
DTC1	Os07g0540366	LOC_Os07g35610	sterility	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	Mutants defective in DTC1 exhibit phenotypes of an enlarged tapetum and middle layer with delayed degeneration, causing male sterility
DTC1	Os07g0540366	LOC_Os07g35610	development	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	Whereas wild-type plants accumulate large amounts of ROS in their anthers at Stage 9 of development, those levels remain low during all stages of development in dtc1 anthers
DTC1	Os07g0540366	LOC_Os07g35610	transcription factor	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	These results suggest that DTC1 functions downstream of those transcription factor genes and upstream of the genes encoding secretory proteins
DTC1	Os07g0540366	LOC_Os07g35610	tapetum	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	Mutants defective in DTC1 exhibit phenotypes of an enlarged tapetum and middle layer with delayed degeneration, causing male sterility
DTC1	Os07g0540366	LOC_Os07g35610	tapetum	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	These findings indicate that DTC1 is a key regulator for tapetum PCD by inhibiting ROS-scavenging activity
DTC1	Os07g0540366	LOC_Os07g35610	PCD	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	In dtc1 anthers, expression of genes encoding secretory proteases or lipid transporters is significantly reduced, while transcripts of PCD regulatory genes, e
DTC1	Os07g0540366	LOC_Os07g35610	PCD	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	These findings indicate that DTC1 is a key regulator for tapetum PCD by inhibiting ROS-scavenging activity
DTC1	Os07g0540366	LOC_Os07g35610	male sterility	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	Mutants defective in DTC1 exhibit phenotypes of an enlarged tapetum and middle layer with delayed degeneration, causing male sterility
DTD|EAT1	Os04g0599300	LOC_Os04g51070	tapetal	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	eat1 exhibits delayed tapetal cell death and aborted pollen formation
DTD|EAT1	Os04g0599300	LOC_Os04g51070	tapetal	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice
DTD|EAT1	Os04g0599300	LOC_Os04g51070	cell death	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	eat1 exhibits delayed tapetal cell death and aborted pollen formation
DTD|EAT1	Os04g0599300	LOC_Os04g51070	cell death	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice
DTD|EAT1	Os04g0599300	LOC_Os04g51070	transcription factor	A novel rice bHLH transcription factor, DTD, acts coordinately with TDR in controlling tapetum function and pollen development	A novel rice bHLH transcription factor, DTD, acts coordinately with TDR in controlling tapetum function and pollen development
DTD|EAT1	Os04g0599300	LOC_Os04g51070	pollen	A novel rice bHLH transcription factor, DTD, acts coordinately with TDR in controlling tapetum function and pollen development	A novel rice bHLH transcription factor, DTD, acts coordinately with TDR in controlling tapetum function and pollen development
DTD|EAT1	Os04g0599300	LOC_Os04g51070	reproductive	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice
DTD|EAT1	Os04g0599300	LOC_Os04g51070	pollen	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	eat1 exhibits delayed tapetal cell death and aborted pollen formation
DTD|EAT1	Os04g0599300	LOC_Os04g51070	tapetum	A novel rice bHLH transcription factor, DTD, acts coordinately with TDR in controlling tapetum function and pollen development	A novel rice bHLH transcription factor, DTD, acts coordinately with TDR in controlling tapetum function and pollen development
DTD|EAT1	Os04g0599300	LOC_Os04g51070	transcription factor	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.
DTD|EAT1	Os04g0599300	LOC_Os04g51070	pollen	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.
DTD|EAT1	Os04g0599300	LOC_Os04g51070	anther	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.
DTD|EAT1	Os04g0599300	LOC_Os04g51070	anther	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	This study indicates that EAT1 is one of key regulators triggering meiotic phasiRNA biogenesis in anther tapetum, and that other bHLH proteins, TIP2 and UDT1, also play some important roles in this process
DTD|EAT1	Os04g0599300	LOC_Os04g51070	meiosis	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	In this study, EAT1-dependent non-cell-autonomous regulation of male meiosis was evidenced from microscopic observation of the eat1 mutant, in which meiosis with aberrantly decondensed chromosomes was retarded but accomplished somehow, eventually resulting in abortive microspores due to an aberrant tapetal PCD
DTD|EAT1	Os04g0599300	LOC_Os04g51070	meiosis	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	EAT1 protein accumulated in tapetal-cell nuclei at early meiosis and postmeiotic microspore stages
DTD|EAT1	Os04g0599300	LOC_Os04g51070	meiosis	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	The transient assay also demonstrated that UNDEVELOPED TAPETUM1 (UDT1)/bHLH164 is a potential interacting partner of both EAT1 and TIP2 during early meiosis
DTD|EAT1	Os04g0599300	LOC_Os04g51070	tapetal	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	In this study, EAT1-dependent non-cell-autonomous regulation of male meiosis was evidenced from microscopic observation of the eat1 mutant, in which meiosis with aberrantly decondensed chromosomes was retarded but accomplished somehow, eventually resulting in abortive microspores due to an aberrant tapetal PCD
DTD|EAT1	Os04g0599300	LOC_Os04g51070	meiotic	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.
DTD|EAT1	Os04g0599300	LOC_Os04g51070	meiotic	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	Meiotic EAT1 promoted transcription of 24-PHAS RNAs at 101 loci, and importantly, also activated DICER-LIKE5 (DCL5, previous DCL3b in rice) mRNA transcription that is required for processing of double-stranded 24-PHASs into 24-nt lengths
DTD|EAT1	Os04g0599300	LOC_Os04g51070	meiotic	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	This study indicates that EAT1 is one of key regulators triggering meiotic phasiRNA biogenesis in anther tapetum, and that other bHLH proteins, TIP2 and UDT1, also play some important roles in this process
DTD|EAT1	Os04g0599300	LOC_Os04g51070	microspore	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	EAT1 protein accumulated in tapetal-cell nuclei at early meiosis and postmeiotic microspore stages
DTD|EAT1	Os04g0599300	LOC_Os04g51070	PCD	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	In this study, EAT1-dependent non-cell-autonomous regulation of male meiosis was evidenced from microscopic observation of the eat1 mutant, in which meiosis with aberrantly decondensed chromosomes was retarded but accomplished somehow, eventually resulting in abortive microspores due to an aberrant tapetal PCD
DTD|EAT1	Os04g0599300	LOC_Os04g51070	development	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	UDT1, OsTDF1, TDR, bHLH142 and EAT1 are upstream regulators of rice tapetum development
DTD|EAT1	Os04g0599300	LOC_Os04g51070	tapetum	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	UDT1, OsTDF1, TDR, bHLH142 and EAT1 are upstream regulators of rice tapetum development
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	domestication	Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia	Our combined population genetics and network analyses suggest that DTH2 likely represents a target of human selection for adaptation to LD conditions during rice domestication and/or improvement, demonstrating an important role of minor-effect quantitative trait loci in crop adaptation and breeding
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	flower	Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia	We show that DTH2 encodes a CONSTANS-like protein that promotes heading by inducing the florigen genes Heading date 3a and RICE FLOWERING LOCUS T 1, and it acts independently of the known floral integrators Heading date 1 and Early heading date 1
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	reproductive	Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia	Moreover, association analysis and transgenic experiments identified two functional nucleotide polymorphisms in DTH2 that correlated with early heading and increased reproductive fitness under natural LD conditions in northern Asia
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	floral	Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia	We show that DTH2 encodes a CONSTANS-like protein that promotes heading by inducing the florigen genes Heading date 3a and RICE FLOWERING LOCUS T 1, and it acts independently of the known floral integrators Heading date 1 and Early heading date 1
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	heading date	Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia	We show that DTH2 encodes a CONSTANS-like protein that promotes heading by inducing the florigen genes Heading date 3a and RICE FLOWERING LOCUS T 1, and it acts independently of the known floral integrators Heading date 1 and Early heading date 1
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	breeding	Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia	Our combined population genetics and network analyses suggest that DTH2 likely represents a target of human selection for adaptation to LD conditions during rice domestication and/or improvement, demonstrating an important role of minor-effect quantitative trait loci in crop adaptation and breeding
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	resistance	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	In the present study, we investigated the functional roles of OsCOL9 in blast resistance
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	resistance	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Taken together, these results indicated that the COL protein OsCOL9 interacted with OsRACK1, and it enhanced the rice blast resistance through SA and ET signaling pathways
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	ethylene	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	OsCOL9 was a critical regulator of pathogen-related genes, especially PR1b, which were also activated by exogenous salicylic acid (SA) and 1-aminocyclopropane-1-carboxylicacid (ACC), the precursor of ethylene (ET)
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	salicylic acid	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	OsCOL9 was a critical regulator of pathogen-related genes, especially PR1b, which were also activated by exogenous salicylic acid (SA) and 1-aminocyclopropane-1-carboxylicacid (ACC), the precursor of ethylene (ET)
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	blast	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	In the present study, we investigated the functional roles of OsCOL9 in blast resistance
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	blast	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Taken together, these results indicated that the COL protein OsCOL9 interacted with OsRACK1, and it enhanced the rice blast resistance through SA and ET signaling pathways
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	magnaporthe oryzae	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	In a previous transcriptome analysis of early response genes in rice during Magnaporthe oryzae infection, we identified a CONSTANS-like (COL) gene OsCOL9
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	magnaporthe oryzae	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Magnaporthe oryzae infection induced OsCOL9 expression, and transgenic OsCOL9 knock-out rice plants showed increased pathogen susceptibility
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	nucleus	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	OsCOL9 was found in the nucleus of rice cells, and it exerted transcriptional activation activities through its middle region (MR)
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	phytohormone	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Further analysis indicated that OsCOL9 over-expression increased the expressions of phytohormone biosynthetic genes, NPR1, WRKY45, OsACO1 and OsACS1, which were related to SA and ET biosynthesis
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	blast resistance	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	In the present study, we investigated the functional roles of OsCOL9 in blast resistance
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	blast resistance	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Taken together, these results indicated that the COL protein OsCOL9 interacted with OsRACK1, and it enhanced the rice blast resistance through SA and ET signaling pathways
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	sa	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Further analysis indicated that OsCOL9 over-expression increased the expressions of phytohormone biosynthetic genes, NPR1, WRKY45, OsACO1 and OsACS1, which were related to SA and ET biosynthesis
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	sa	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Interestingly, we found that OsCOL9 physically interacted with the scaffold protein OsRACK1 through its CCT domain, and the OsRACK1 expression was induced in response to exogenous SA and ACC as well as M
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	sa	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Taken together, these results indicated that the COL protein OsCOL9 interacted with OsRACK1, and it enhanced the rice blast resistance through SA and ET signaling pathways
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	SA	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Further analysis indicated that OsCOL9 over-expression increased the expressions of phytohormone biosynthetic genes, NPR1, WRKY45, OsACO1 and OsACS1, which were related to SA and ET biosynthesis
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	SA	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Interestingly, we found that OsCOL9 physically interacted with the scaffold protein OsRACK1 through its CCT domain, and the OsRACK1 expression was induced in response to exogenous SA and ACC as well as M
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	SA	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Taken together, these results indicated that the COL protein OsCOL9 interacted with OsRACK1, and it enhanced the rice blast resistance through SA and ET signaling pathways
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	pathogen	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	Magnaporthe oryzae infection induced OsCOL9 expression, and transgenic OsCOL9 knock-out rice plants showed increased pathogen susceptibility
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	resistance	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	We have previously identified that the COL family member OsCOL9 can positively enhance the rice blast resistance
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	panicle	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	In addition, OsCOL9 served as a potential yield gene, and its deficiency reduced the grain number of main panicle in plants
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	grain	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	In addition, OsCOL9 served as a potential yield gene, and its deficiency reduced the grain number of main panicle in plants
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	grain number	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	In addition, OsCOL9 served as a potential yield gene, and its deficiency reduced the grain number of main panicle in plants
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	yield	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	In addition, OsCOL9 served as a potential yield gene, and its deficiency reduced the grain number of main panicle in plants
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	blast	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	We have previously identified that the COL family member OsCOL9 can positively enhance the rice blast resistance
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	heading date	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	OsCOL9 expression exhibited two types of circadian patterns under different daylight conditions, and it could delay the heading date by suppressing the Ehd1 photoperiodic flowering pathway
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	flowering time	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	Our data showed that overexpression of OsCOL9 delayed the flowering time under both short-day (SD) and long-day (LD) conditions, leading to suppressed expressions of EHd1, RFT and Hd3a at the mRNA Level
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	flowering time	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	Taken together, our results revealed that OsCOL9 could delay the flowering time in rice by repressing the Ehd1 pathway
DTH2|OsCOL9|OsCCT08	Os02g0724000	LOC_Os02g49230	blast resistance	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	We have previously identified that the COL family member OsCOL9 can positively enhance the rice blast resistance
DTM1	None	LOC_Os07g43010	anther	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Transcripts of UDT1, which functions in tapetum development during early meiosis, were reduced in dtm1 anthers, as were those of PAIR1, which is involved in chromosome pairing and synapsis during meiosis
DTM1	None	LOC_Os07g43010	anther	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	However, expression of MSP1 and MEL1, which function in anther wall specification and germ cell division, respectively, was not altered in the dtm1 mutant
DTM1	None	LOC_Os07g43010	anther	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Moreover, transcripts of DTM1 were reduced in msp1 mutant anthers, but not in udt1 and pair1 mutants
DTM1	None	LOC_Os07g43010	tapetum	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Here we identified a rice gene, DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1), which controls the early stages of that development
DTM1	None	LOC_Os07g43010	tapetum	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Transcripts of UDT1, which functions in tapetum development during early meiosis, were reduced in dtm1 anthers, as were those of PAIR1, which is involved in chromosome pairing and synapsis during meiosis
DTM1	None	LOC_Os07g43010	tapetum	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	These results, together with their mutant phenotypes, suggest that DTM1 plays important roles in the ER membrane during early tapetum development, functioning after MSP1 and before UDT1, and also in meiocyte development, after MEL1 and before PAIR1
DTM1	None	LOC_Os07g43010	tapetum	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis
DTM1	None	LOC_Os07g43010	cell division	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	However, expression of MSP1 and MEL1, which function in anther wall specification and germ cell division, respectively, was not altered in the dtm1 mutant
DTM1	None	LOC_Os07g43010	tapetal	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	RNA in-situ hybridization analyses showed that DTM1 transcripts were most abundant in tapetal cells at stages 6 and 7, and moderately in the pollen mother cells and meiocytes
DTM1	None	LOC_Os07g43010	meiosis	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Transcripts of UDT1, which functions in tapetum development during early meiosis, were reduced in dtm1 anthers, as were those of PAIR1, which is involved in chromosome pairing and synapsis during meiosis
DTM1	None	LOC_Os07g43010	meiosis	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis
DTM1	None	LOC_Os07g43010	pollen	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	RNA in-situ hybridization analyses showed that DTM1 transcripts were most abundant in tapetal cells at stages 6 and 7, and moderately in the pollen mother cells and meiocytes
Du1	Os10g0498600	LOC_Os10g35550	grain	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	To understand the molecular mechanism that regulates the starch biosynthesis in rice grains, we characterized a classic rice mutant dull endosperm1 (du1) and isolated Du1 through a map-based cloning approach
Du1	Os10g0498600	LOC_Os10g35550	panicle	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	Du1, encoding a member of pre-mRNA processing (Prp1) family, is expressed mainly in panicles
Du1	Os10g0498600	LOC_Os10g35550	endosperm	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	To understand the molecular mechanism that regulates the starch biosynthesis in rice grains, we characterized a classic rice mutant dull endosperm1 (du1) and isolated Du1 through a map-based cloning approach
Du1	Os10g0498600	LOC_Os10g35550	starch biosynthesis	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	To understand the molecular mechanism that regulates the starch biosynthesis in rice grains, we characterized a classic rice mutant dull endosperm1 (du1) and isolated Du1 through a map-based cloning approach
Du1	Os10g0498600	LOC_Os10g35550	starch biosynthesis	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	Du1 specifically affects the splicing efficiency of Wx(b) and regulates starch biosynthesis by mediating the expression of starch biosynthesis genes
Du1	Os10g0498600	LOC_Os10g35550	starch biosynthesis	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	These results strongly suggest that Du1 may function as a regulator of the starch biosynthesis by affecting the splicing of Wx(b) and the expression of other genes involved in the rice starch biosynthetic pathways
Du1	Os10g0498600	LOC_Os10g35550	starch biosynthesis	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)
Du1	Os10g0498600	LOC_Os10g35550	starch	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	To understand the molecular mechanism that regulates the starch biosynthesis in rice grains, we characterized a classic rice mutant dull endosperm1 (du1) and isolated Du1 through a map-based cloning approach
Du1	Os10g0498600	LOC_Os10g35550	starch	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	Du1 specifically affects the splicing efficiency of Wx(b) and regulates starch biosynthesis by mediating the expression of starch biosynthesis genes
Du1	Os10g0498600	LOC_Os10g35550	starch	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	These results strongly suggest that Du1 may function as a regulator of the starch biosynthesis by affecting the splicing of Wx(b) and the expression of other genes involved in the rice starch biosynthetic pathways
Du1	Os10g0498600	LOC_Os10g35550	starch	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)
Du13|TL1	Os06g0698859	LOC_Os06g48530	map-based cloning	Du13 encodes a C(2) H(2) zinc-finger protein that regulates Wx(b) pre-mRNA splicing and microRNA biogenesis in rice endosperm.	 Map-based cloning showed that Du13 encodes a C(2) H(2) zinc-finger protein
Du13|TL1	Os06g0698859	LOC_Os06g48530	R protein	Du13 encodes a C(2) H(2) zinc-finger protein that regulates Wx(b) pre-mRNA splicing and microRNA biogenesis in rice endosperm.	Du13 encodes a C(2) H(2) zinc-finger protein that regulates Wx(b) pre-mRNA splicing and microRNA biogenesis in rice endosperm.
Du13|TL1	Os06g0698859	LOC_Os06g48530	R protein	Du13 encodes a C(2) H(2) zinc-finger protein that regulates Wx(b) pre-mRNA splicing and microRNA biogenesis in rice endosperm.	 Map-based cloning showed that Du13 encodes a C(2) H(2) zinc-finger protein
Du13|TL1	Os06g0698859	LOC_Os06g48530	R protein	Du13 encodes a C(2) H(2) zinc-finger protein that regulates Wx(b) pre-mRNA splicing and microRNA biogenesis in rice endosperm.	 Moreover, Du13 also regulates alternative splicing of other protein-coding transcripts and affects the biogenesis of a subset of microRNAs
Du13|TL1	Os06g0698859	LOC_Os06g48530	endosperm	Du13 encodes a C(2) H(2) zinc-finger protein that regulates Wx(b) pre-mRNA splicing and microRNA biogenesis in rice endosperm.	 Du13 coordinates with the nuclear cap-binding complex to regulate the splicing of Wx(b) transcripts in rice endosperm
Du13|TL1	Os06g0698859	LOC_Os06g48530	grain	Mutation of TL1, encoding a novel C(2)H(2) zinc finger protein, improves grains eating and cooking quality in rice.	 Loss of TL1 function reduced apparent amylose content (AAC), total starch, gel consistency, and gelatinisation temperature, whereas increased viscosity, total lipid, and ratio of amylopectin A chains with degree of polymerization (DP) 6-12 to B(1) chains with DP 13-24, resulting in an enhanced grain ECQ
Du13|TL1	Os06g0698859	LOC_Os06g48530	R protein	Mutation of TL1, encoding a novel C(2)H(2) zinc finger protein, improves grains eating and cooking quality in rice.	 Here, we report the cloning and characterization of a novel C(2)H(2) zinc finger protein TL1 (Translucent endosperm 1) that positively regulates amylose synthesis in rice grains
Du13|TL1	Os06g0698859	LOC_Os06g48530	zinc	Mutation of TL1, encoding a novel C(2)H(2) zinc finger protein, improves grains eating and cooking quality in rice.	 Here, we report the cloning and characterization of a novel C(2)H(2) zinc finger protein TL1 (Translucent endosperm 1) that positively regulates amylose synthesis in rice grains
Du13|TL1	Os06g0698859	LOC_Os06g48530	endosperm	Mutation of TL1, encoding a novel C(2)H(2) zinc finger protein, improves grains eating and cooking quality in rice.	 Here, we report the cloning and characterization of a novel C(2)H(2) zinc finger protein TL1 (Translucent endosperm 1) that positively regulates amylose synthesis in rice grains
Du13|TL1	Os06g0698859	LOC_Os06g48530	amylose content	Mutation of TL1, encoding a novel C(2)H(2) zinc finger protein, improves grains eating and cooking quality in rice.	 Loss of TL1 function reduced apparent amylose content (AAC), total starch, gel consistency, and gelatinisation temperature, whereas increased viscosity, total lipid, and ratio of amylopectin A chains with degree of polymerization (DP) 6-12 to B(1) chains with DP 13-24, resulting in an enhanced grain ECQ
DUA1	Os09g0474051	LOC_Os09g29825	chloroplast	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.
DUA1	Os09g0474051	LOC_Os09g29825	temperature	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.
DUA1	Os09g0474051	LOC_Os09g29825	development	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.
DUA1	Os09g0474051	LOC_Os09g29825	chloroplast development	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.
DUA1	Os09g0474051	LOC_Os09g29825	chloroplast	A pentatricopeptide repeat protein DUA1 interacts with sigma factor 1 to regulate chloroplast gene expression in Rice	A pentatricopeptide repeat protein DUA1 interacts with sigma factor 1 to regulate chloroplast gene expression in Rice
DUA1	Os09g0474051	LOC_Os09g29825	chloroplast	A pentatricopeptide repeat protein DUA1 interacts with sigma factor 1 to regulate chloroplast gene expression in Rice	Our study reveals that the PPR protein DUA1 plays an important role in regulating PEP-mediated chloroplast gene expression through interacting with OsSIG1, thus modulates chloroplast development in response to environmental signals
DUA1	Os09g0474051	LOC_Os09g29825	development	A pentatricopeptide repeat protein DUA1 interacts with sigma factor 1 to regulate chloroplast gene expression in Rice	Our study reveals that the PPR protein DUA1 plays an important role in regulating PEP-mediated chloroplast gene expression through interacting with OsSIG1, thus modulates chloroplast development in response to environmental signals
DUA1	Os09g0474051	LOC_Os09g29825	R protein	A pentatricopeptide repeat protein DUA1 interacts with sigma factor 1 to regulate chloroplast gene expression in Rice	Our study reveals that the PPR protein DUA1 plays an important role in regulating PEP-mediated chloroplast gene expression through interacting with OsSIG1, thus modulates chloroplast development in response to environmental signals
DUA1	Os09g0474051	LOC_Os09g29825	chloroplast development	A pentatricopeptide repeat protein DUA1 interacts with sigma factor 1 to regulate chloroplast gene expression in Rice	Our study reveals that the PPR protein DUA1 plays an important role in regulating PEP-mediated chloroplast gene expression through interacting with OsSIG1, thus modulates chloroplast development in response to environmental signals
DVB1	Os03g0840900	LOC_Os03g62420	vascular bundle	Decreased Vascular Bundle 1 affects mitochondrial and plant development in rice.	Map-based cloning, genetic complementation, and phylogenetic analysis revealed that DVB1 encodes a structural protein classified in the Mic10 family and is required for the formation of cristae in mitochondria, and was primarily expressed in vascular bundles
DVB1	Os03g0840900	LOC_Os03g62420	auxin	Decreased Vascular Bundle 1 affects mitochondrial and plant development in rice.	Comparing with the wild type, disruption of amino acid metabolism and increased auxin synthesis were observed in dvb1 mutant which also showed increased sensitivity to the mitochondrial electron transport inhibitors
DVB1	Os03g0840900	LOC_Os03g62420	development	Decreased Vascular Bundle 1 affects mitochondrial and plant development in rice.	Further studies indicated that DVB1 is important for mitochondrial and plant development in rice
DVB1	Os03g0840900	LOC_Os03g62420	plant development	Decreased Vascular Bundle 1 affects mitochondrial and plant development in rice.	Further studies indicated that DVB1 is important for mitochondrial and plant development in rice
DVB1	Os03g0840900	LOC_Os03g62420	mitochondria	Decreased Vascular Bundle 1 affects mitochondrial and plant development in rice.	The DVB1 protein is partially localized in the mitochondria and capable of forming dimers and polymers
DVB1	Os03g0840900	LOC_Os03g62420	mitochondria	Decreased Vascular Bundle 1 affects mitochondrial and plant development in rice.	CONCLUSIONS: DVB1 belongs to Mic10 family and DVB1 is partially localized in the mitochondria
DVB1	Os03g0840900	LOC_Os03g62420	map-based cloning	Decreased Vascular Bundle 1 affects mitochondrial and plant development in rice.	Map-based cloning, genetic complementation, and phylogenetic analysis revealed that DVB1 encodes a structural protein classified in the Mic10 family and is required for the formation of cristae in mitochondria, and was primarily expressed in vascular bundles
DWA1	Os04g0473850	LOC_Os04g39780	drought resistance	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice	Our results suggest that DWA1 controls drought resistance by regulating drought-induced cuticular wax deposition in rice
DWA1	Os04g0473850	LOC_Os04g39780	drought resistance	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice
DWA1	Os04g0473850	LOC_Os04g39780	drought	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice	Here, we identified a rice gene Drought-Induced Wax Accumulation 1 (DWA1) encoding a very large protein (2,391 aa in length) containing multiple enzymatic structures, including an oxidoreductase-like domain; a prokaryotic nonribosomal peptide synthetase-like module, including an AMP-binding domain; and an allene oxide synthase-like domain
DWA1	Os04g0473850	LOC_Os04g39780	drought	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice	A dwa1 KO mutant was highly sensitive to drought stress relative to the WT
DWA1	Os04g0473850	LOC_Os04g39780	drought	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice	DWA1 was preferentially expressed in vascular tissues and epidermal layers and strongly induced by drought stress
DWA1	Os04g0473850	LOC_Os04g39780	drought	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice	The dwa1 mutant was impaired in cuticular wax accumulation under drought stress, which significantly altered the cuticular wax composition of the plant, resulting in increased drought sensitivity
DWA1	Os04g0473850	LOC_Os04g39780	drought	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice	The expression of many wax-related genes was significantly suppressed in dwa1 under drought conditions
DWA1	Os04g0473850	LOC_Os04g39780	drought	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice	Our results suggest that DWA1 controls drought resistance by regulating drought-induced cuticular wax deposition in rice
DWA1	Os04g0473850	LOC_Os04g39780	drought	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice
DWL2	Os05g0564500	LOC_Os05g48990	growth	DWT1/DWL2 act together with OsPIP5K1 to regulate plant uniform growth in rice.	Overall, our data suggest that nuclear localized OsPIP5K1 acts with DWT1 and/or DWL2 to coordinate the uniform growth of rice shoots, likely through nuclear phosphoinositide signals, which provides insights into the regulation of rice uniformity via a largely unexplored plant nuclear signaling pathway
DWT1	Os01g0667450|Os01g0667400	LOC_Os01g47710	tiller	Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice	Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice
DWT1	Os01g0667450|Os01g0667400	LOC_Os01g47710	growth	Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice	Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice
DWT1	Os01g0667450|Os01g0667400	LOC_Os01g47710	transcription factor	Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice	Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice
DWT1	Os01g0667450|Os01g0667400	LOC_Os01g47710	GA	Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice	Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling.
DWT1	Os01g0667450|Os01g0667400	LOC_Os01g47710	panicle	Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice	The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth.
EBR1	Os05g0279400	LOC_Os05g19970	growth	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Here, we isolated a rice mutant ebr1 (enhanced blight and blast resistance 1) that shows enhanced broad-spectrum bacterial and fungal disease resistance, but displays spontaneous PCD, autoimmunity, and stunted growth
EBR1	Os05g0279400	LOC_Os05g19970	growth	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	EBR1 encodes an E3 ubiquitin ligase that interacts with OsBAG4, which belongs to the BAG (Bcl-2-associated athanogene) family that functions in cell death, growth arrest, and immune responses in mammals
EBR1	Os05g0279400	LOC_Os05g19970	resistance	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Here, we isolated a rice mutant ebr1 (enhanced blight and blast resistance 1) that shows enhanced broad-spectrum bacterial and fungal disease resistance, but displays spontaneous PCD, autoimmunity, and stunted growth
EBR1	Os05g0279400	LOC_Os05g19970	disease	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Here, we isolated a rice mutant ebr1 (enhanced blight and blast resistance 1) that shows enhanced broad-spectrum bacterial and fungal disease resistance, but displays spontaneous PCD, autoimmunity, and stunted growth
EBR1	Os05g0279400	LOC_Os05g19970	blast	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Here, we isolated a rice mutant ebr1 (enhanced blight and blast resistance 1) that shows enhanced broad-spectrum bacterial and fungal disease resistance, but displays spontaneous PCD, autoimmunity, and stunted growth
EBR1	Os05g0279400	LOC_Os05g19970	disease resistance	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Here, we isolated a rice mutant ebr1 (enhanced blight and blast resistance 1) that shows enhanced broad-spectrum bacterial and fungal disease resistance, but displays spontaneous PCD, autoimmunity, and stunted growth
EBR1	Os05g0279400	LOC_Os05g19970	cell death	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	EBR1 encodes an E3 ubiquitin ligase that interacts with OsBAG4, which belongs to the BAG (Bcl-2-associated athanogene) family that functions in cell death, growth arrest, and immune responses in mammals
EBR1	Os05g0279400	LOC_Os05g19970	immune response	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	EBR1 encodes an E3 ubiquitin ligase that interacts with OsBAG4, which belongs to the BAG (Bcl-2-associated athanogene) family that functions in cell death, growth arrest, and immune responses in mammals
EBR1	Os05g0279400	LOC_Os05g19970	blight	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Here, we isolated a rice mutant ebr1 (enhanced blight and blast resistance 1) that shows enhanced broad-spectrum bacterial and fungal disease resistance, but displays spontaneous PCD, autoimmunity, and stunted growth
EBR1	Os05g0279400	LOC_Os05g19970	blast resistance	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Here, we isolated a rice mutant ebr1 (enhanced blight and blast resistance 1) that shows enhanced broad-spectrum bacterial and fungal disease resistance, but displays spontaneous PCD, autoimmunity, and stunted growth
EBR1	Os05g0279400	LOC_Os05g19970	Ubiquitin	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	EBR1 encodes an E3 ubiquitin ligase that interacts with OsBAG4, which belongs to the BAG (Bcl-2-associated athanogene) family that functions in cell death, growth arrest, and immune responses in mammals
EDR1	Os05g0552700	LOC_Os05g47950	development	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Here, we cloned the UDP-glucosyltransferase gene EDR1 (Endosperm Development in Rice) responsible for differential endosperm development between upland rice and paddy rice by performing QTL analysis and map-based cloning
EDR1	Os05g0552700	LOC_Os05g47950	development	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Natural variations in EDR1 significantly reduced the UDP-glucosyltransferase activity of EDR1(YZN) compared to EDR1(YD1) , resulting in abnormal endosperm development in the near-isogenic line (NIL), accompanied by insufficient grains and changes in grain quality
EDR1	Os05g0552700	LOC_Os05g47950	development	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Taken together, these results suggest that the UDP-glucosyltransferase gene EDR1 is an important determinant controlling differential endosperm development between upland rice and paddy rice
EDR1	Os05g0552700	LOC_Os05g47950	grain	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 EDR1 was highly expressed in developing seeds during grain filling
EDR1	Os05g0552700	LOC_Os05g47950	grain	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Natural variations in EDR1 significantly reduced the UDP-glucosyltransferase activity of EDR1(YZN) compared to EDR1(YD1) , resulting in abnormal endosperm development in the near-isogenic line (NIL), accompanied by insufficient grains and changes in grain quality
EDR1	Os05g0552700	LOC_Os05g47950	quality	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Natural variations in EDR1 significantly reduced the UDP-glucosyltransferase activity of EDR1(YZN) compared to EDR1(YD1) , resulting in abnormal endosperm development in the near-isogenic line (NIL), accompanied by insufficient grains and changes in grain quality
EDR1	Os05g0552700	LOC_Os05g47950	map-based cloning	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Here, we cloned the UDP-glucosyltransferase gene EDR1 (Endosperm Development in Rice) responsible for differential endosperm development between upland rice and paddy rice by performing QTL analysis and map-based cloning
EDR1	Os05g0552700	LOC_Os05g47950	grain filling	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 EDR1 was highly expressed in developing seeds during grain filling
EDR1	Os05g0552700	LOC_Os05g47950	endosperm	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Here, we cloned the UDP-glucosyltransferase gene EDR1 (Endosperm Development in Rice) responsible for differential endosperm development between upland rice and paddy rice by performing QTL analysis and map-based cloning
EDR1	Os05g0552700	LOC_Os05g47950	endosperm	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Natural variations in EDR1 significantly reduced the UDP-glucosyltransferase activity of EDR1(YZN) compared to EDR1(YD1) , resulting in abnormal endosperm development in the near-isogenic line (NIL), accompanied by insufficient grains and changes in grain quality
EDR1	Os05g0552700	LOC_Os05g47950	endosperm	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Taken together, these results suggest that the UDP-glucosyltransferase gene EDR1 is an important determinant controlling differential endosperm development between upland rice and paddy rice
EDR1	Os05g0552700	LOC_Os05g47950	endosperm development	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Here, we cloned the UDP-glucosyltransferase gene EDR1 (Endosperm Development in Rice) responsible for differential endosperm development between upland rice and paddy rice by performing QTL analysis and map-based cloning
EDR1	Os05g0552700	LOC_Os05g47950	endosperm development	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Natural variations in EDR1 significantly reduced the UDP-glucosyltransferase activity of EDR1(YZN) compared to EDR1(YD1) , resulting in abnormal endosperm development in the near-isogenic line (NIL), accompanied by insufficient grains and changes in grain quality
EDR1	Os05g0552700	LOC_Os05g47950	endosperm development	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Taken together, these results suggest that the UDP-glucosyltransferase gene EDR1 is an important determinant controlling differential endosperm development between upland rice and paddy rice
EDR1	Os05g0552700	LOC_Os05g47950	grain quality	Natural alleles of a UDP-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	 Natural variations in EDR1 significantly reduced the UDP-glucosyltransferase activity of EDR1(YZN) compared to EDR1(YD1) , resulting in abnormal endosperm development in the near-isogenic line (NIL), accompanied by insufficient grains and changes in grain quality
EDT1	Os11g0696200	LOC_Os11g47330	pollen	Earlier Degraded Tapetum1 (EDT1) encodes an ATP-citrate lyase required for tapetum programmed cell death.	Our results demonstrate that the timing of tapetum PCD must be tightly regulated for successful pollen development, and that EDT1 is involved in the tapetum PCD process
EDT1	Os11g0696200	LOC_Os11g47330	cytoplasm	Earlier Degraded Tapetum1 (EDT1) encodes an ATP-citrate lyase required for tapetum programmed cell death.	EDT1 localized in both the nucleus and the cytoplasm as observed in rice protoplast transient assays
EDT1	Os11g0696200	LOC_Os11g47330	nucleus	Earlier Degraded Tapetum1 (EDT1) encodes an ATP-citrate lyase required for tapetum programmed cell death.	EDT1 localized in both the nucleus and the cytoplasm as observed in rice protoplast transient assays
EDT1	Os11g0696200	LOC_Os11g47330	tapetum	Earlier Degraded Tapetum1 (EDT1) encodes an ATP-citrate lyase required for tapetum programmed cell death.	EDT1 encodes a subunit of ATP-citrate lyase (ACL), and is specifically expressed in the tapetum of anthers
EDT1	Os11g0696200	LOC_Os11g47330	tapetum	Earlier Degraded Tapetum1 (EDT1) encodes an ATP-citrate lyase required for tapetum programmed cell death.	Our results demonstrate that the timing of tapetum PCD must be tightly regulated for successful pollen development, and that EDT1 is involved in the tapetum PCD process
EDT1	Os11g0696200	LOC_Os11g47330	pollen development	Earlier Degraded Tapetum1 (EDT1) encodes an ATP-citrate lyase required for tapetum programmed cell death.	Our results demonstrate that the timing of tapetum PCD must be tightly regulated for successful pollen development, and that EDT1 is involved in the tapetum PCD process
EDT1	Os11g0696200	LOC_Os11g47330	PCD	Earlier Degraded Tapetum1 (EDT1) encodes an ATP-citrate lyase required for tapetum programmed cell death.	Our results demonstrate that the timing of tapetum PCD must be tightly regulated for successful pollen development, and that EDT1 is involved in the tapetum PCD process
EF-1beta2	Os03g0406200	LOC_Os03g29260	seedling	A novel variant of translation elongation factor-1beta: isolation and characterization of the rice gene encoding EF-1beta2	Expression of EF-1beta2 mRNA is abundant in seeds and cultured cells, but is considerably low in the tissues of the rice seedling
EF-1beta2	Os03g0406200	LOC_Os03g29260	seed	A novel variant of translation elongation factor-1beta: isolation and characterization of the rice gene encoding EF-1beta2	Expression of EF-1beta2 mRNA is abundant in seeds and cultured cells, but is considerably low in the tissues of the rice seedling
Ef-cd	None	None	nitrogen	Ef-cd locus shortens rice maturity duration without yield penalty.	Ef-cd facilitates nitrogen utilization and also improves the photosynthesis rate
Ef-cd	None	None	grain	Ef-cd locus shortens rice maturity duration without yield penalty.	Therefore, Ef-cd could be a vital contributor of elite early maturing hybrid varieties in balancing grain yield with maturity duration
Ef-cd	None	None	photosynthesis	Ef-cd locus shortens rice maturity duration without yield penalty.	Ef-cd facilitates nitrogen utilization and also improves the photosynthesis rate
Ef-cd	None	None	grain yield	Ef-cd locus shortens rice maturity duration without yield penalty.	Therefore, Ef-cd could be a vital contributor of elite early maturing hybrid varieties in balancing grain yield with maturity duration
Ef-cd	None	None	yield	Ef-cd locus shortens rice maturity duration without yield penalty.	Ef-cd locus shortens rice maturity duration without yield penalty.
Ef-cd	None	None	yield	Ef-cd locus shortens rice maturity duration without yield penalty.	Field test comparisons of early maturing Ef-cd near-isogenic lines with their wild types as well as of the derivative early maturing hybrids with their wild-type hybrids conducted under different latitudes determined that the early maturing Ef-cd allele shortens maturity duration (ranging from 7 to 20 d) without a concomitant yield penalty
Ef-cd	None	None	yield	Ef-cd locus shortens rice maturity duration without yield penalty.	Therefore, Ef-cd could be a vital contributor of elite early maturing hybrid varieties in balancing grain yield with maturity duration
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	 In addition, OsClo5 enhanced the inhibitory effect of OsDi19-5 in the tobacco transient system, which was confirmed by qRT-PCR analysis in rice seedlings under salt stress
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	salt	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	salt	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	 In addition, OsClo5 enhanced the inhibitory effect of OsDi19-5 in the tobacco transient system, which was confirmed by qRT-PCR analysis in rice seedlings under salt stress
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	tolerance	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	salt stress	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	salt stress	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	 In addition, OsClo5 enhanced the inhibitory effect of OsDi19-5 in the tobacco transient system, which was confirmed by qRT-PCR analysis in rice seedlings under salt stress
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	stress	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	stress	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	 In addition, OsClo5 enhanced the inhibitory effect of OsDi19-5 in the tobacco transient system, which was confirmed by qRT-PCR analysis in rice seedlings under salt stress
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	nucleus	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	 Thereby, biochemical and molecular genetic experiments were carried out, the results revealed that OsClo5 had was able to bind calcium and phospholipids in vitro and localized in the nucleus and endoplasmic reticulum in rice protoplasts
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	stress tolerance	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	calcium	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	 Thereby, biochemical and molecular genetic experiments were carried out, the results revealed that OsClo5 had was able to bind calcium and phospholipids in vitro and localized in the nucleus and endoplasmic reticulum in rice protoplasts
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	seedlings	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 Overexpression of OsClo5 decreased cold tolerance, and RNAi lines of OsClo5 had higher survival than WT seedlings
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	resistance	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 OsClo5 is a constitutively expressed caleosin protein that regulates plant cold resistance through inhibition of jasmonate signalling and JA synthesis
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	jasmonate	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 OsClo5 inhibited one jasmonate biosynthetic gene and several jasmonate ZIM domain (JAZ) genes, which were upregulated in response to cold stress
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	jasmonate	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 OsClo5 is a constitutively expressed caleosin protein that regulates plant cold resistance through inhibition of jasmonate signalling and JA synthesis
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	ja	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 OsClo5 is a constitutively expressed caleosin protein that regulates plant cold resistance through inhibition of jasmonate signalling and JA synthesis
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	JA	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 OsClo5 is a constitutively expressed caleosin protein that regulates plant cold resistance through inhibition of jasmonate signalling and JA synthesis
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	cold tolerance	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 Overexpression of OsClo5 decreased cold tolerance, and RNAi lines of OsClo5 had higher survival than WT seedlings
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	cold stress	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 Overexpression lines and RNAi lines of OsClo5 were subjected to cold stress and recovery to measure electrolyte leakage and survival rate
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	cold stress	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 OsClo5 inhibited one jasmonate biosynthetic gene and several jasmonate ZIM domain (JAZ) genes, which were upregulated in response to cold stress
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	stress	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 Overexpression lines and RNAi lines of OsClo5 were subjected to cold stress and recovery to measure electrolyte leakage and survival rate
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	stress	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 OsClo5 inhibited one jasmonate biosynthetic gene and several jasmonate ZIM domain (JAZ) genes, which were upregulated in response to cold stress
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	cold	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 Overexpression lines and RNAi lines of OsClo5 were subjected to cold stress and recovery to measure electrolyte leakage and survival rate
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	cold	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 Overexpression of OsClo5 decreased cold tolerance, and RNAi lines of OsClo5 had higher survival than WT seedlings
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	cold	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 OsClo5 inhibited one jasmonate biosynthetic gene and several jasmonate ZIM domain (JAZ) genes, which were upregulated in response to cold stress
EFA27|OsClo5	Os04g0511200	LOC_Os04g43200	cold	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	 OsClo5 is a constitutively expressed caleosin protein that regulates plant cold resistance through inhibition of jasmonate signalling and JA synthesis
EG1|GY1	Os01g0900400	LOC_Os01g67430	floral meristem	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	In this study, we report the cloning of the rice EXTRA GLUME1 (EG1) gene, a putative lipase gene that specifies empty-glume fate and floral meristem determinacy
EG1|GY1	Os01g0900400	LOC_Os01g67430	floral meristem	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	We also found that the floral meristem and organ identity gene OsLHS1 showed altered expression with respect to both pattern and levels in the eg1 mutant, and is probably responsible for the pleiotropic floral defects in eg1
EG1|GY1	Os01g0900400	LOC_Os01g67430	meristem	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	In this study, we report the cloning of the rice EXTRA GLUME1 (EG1) gene, a putative lipase gene that specifies empty-glume fate and floral meristem determinacy
EG1|GY1	Os01g0900400	LOC_Os01g67430	meristem	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	We also found that the floral meristem and organ identity gene OsLHS1 showed altered expression with respect to both pattern and levels in the eg1 mutant, and is probably responsible for the pleiotropic floral defects in eg1
EG1|GY1	Os01g0900400	LOC_Os01g67430	spikelet	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	As a putative class III lipase that functionally differs from any known plant lipase, EG1 reveals a novel pathway that regulates rice empty-glume fate and spikelet development
EG1|GY1	Os01g0900400	LOC_Os01g67430	floral	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	In this study, we report the cloning of the rice EXTRA GLUME1 (EG1) gene, a putative lipase gene that specifies empty-glume fate and floral meristem determinacy
EG1|GY1	Os01g0900400	LOC_Os01g67430	floral	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	In addition to affecting the identity and number of empty glumes, mutations in EG1 caused ectopic floral organs to be formed at each organ whorl or in extra ectopic whorls
EG1|GY1	Os01g0900400	LOC_Os01g67430	floral	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	EG1 is expressed strongly in inflorescence primordia and weakly in developing floral primordia
EG1|GY1	Os01g0900400	LOC_Os01g67430	floral	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	We also found that the floral meristem and organ identity gene OsLHS1 showed altered expression with respect to both pattern and levels in the eg1 mutant, and is probably responsible for the pleiotropic floral defects in eg1
EG1|GY1	Os01g0900400	LOC_Os01g67430	inflorescence	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	EG1 is expressed strongly in inflorescence primordia and weakly in developing floral primordia
EG1|GY1	Os01g0900400	LOC_Os01g67430	JA biosynthesis	Jasmonic acid regulates spikelet development in rice	We show that EG1 is a plastid-targeted lipase that participates in JA biosynthesis, and EG2/OsJAZ1 is a JA signalling repressor that interacts with a putative JA receptor, OsCOI1b, to trigger OsJAZ1's degradation during spikelet development
EG1|GY1	Os01g0900400	LOC_Os01g67430	temperature	A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.).	Collectively, our results demonstrate that EG1 promotes floral robustness against temperature fluctuation by safeguarding the expression of floral identify genes through a high temperature-dependent mitochondrial lipid pathway and uncovers a novel mechanistic insight into floral developmental control
EG1|GY1	Os01g0900400	LOC_Os01g67430	floral	A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.).	Furthermore, we found that numerous environmentally responsive genes including many floral identity genes are transcriptionally repressed in eg1 mutants and OsMADS1, OsMADS6 and OsG1 genetically act downstream of EG1 to maintain floral robustness
EG1|GY1	Os01g0900400	LOC_Os01g67430	floral	A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.).	Collectively, our results demonstrate that EG1 promotes floral robustness against temperature fluctuation by safeguarding the expression of floral identify genes through a high temperature-dependent mitochondrial lipid pathway and uncovers a novel mechanistic insight into floral developmental control
EG1|GY1	Os01g0900400	LOC_Os01g67430	seedlings	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	GY1 functions at the initial step of jasmonic acid (JA) biosynthesis to repress mesocotyl and coleoptile elongation in etiolated rice seedlings
EG1|GY1	Os01g0900400	LOC_Os01g67430	growth	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Ethylene inhibits the expression of GY1 and other genes in the JA biosynthesis pathway to reduce JA levels and enhance mesocotyl and coleoptile growth by promoting cell elongation
EG1|GY1	Os01g0900400	LOC_Os01g67430	growth	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Genetically, GY1 acts downstream of the OsEIN2-mediated ethylene signaling pathway to regulate mesocotyl/coleoptile growth
EG1|GY1	Os01g0900400	LOC_Os01g67430	map-based cloning	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	GY1 was identified through map-based cloning and encodes a PLA1-type phospholipase that localizes in chloroplasts
EG1|GY1	Os01g0900400	LOC_Os01g67430	ethylene	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Ethylene inhibits the expression of GY1 and other genes in the JA biosynthesis pathway to reduce JA levels and enhance mesocotyl and coleoptile growth by promoting cell elongation
EG1|GY1	Os01g0900400	LOC_Os01g67430	ethylene	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Genetically, GY1 acts downstream of the OsEIN2-mediated ethylene signaling pathway to regulate mesocotyl/coleoptile growth
EG1|GY1	Os01g0900400	LOC_Os01g67430	cell elongation	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Ethylene inhibits the expression of GY1 and other genes in the JA biosynthesis pathway to reduce JA levels and enhance mesocotyl and coleoptile growth by promoting cell elongation
EG1|GY1	Os01g0900400	LOC_Os01g67430	jasmonic	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	GY1 functions at the initial step of jasmonic acid (JA) biosynthesis to repress mesocotyl and coleoptile elongation in etiolated rice seedlings
EG1|GY1	Os01g0900400	LOC_Os01g67430	jasmonic acid	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	GY1 functions at the initial step of jasmonic acid (JA) biosynthesis to repress mesocotyl and coleoptile elongation in etiolated rice seedlings
EG1|GY1	Os01g0900400	LOC_Os01g67430	ja	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Ethylene inhibits the expression of GY1 and other genes in the JA biosynthesis pathway to reduce JA levels and enhance mesocotyl and coleoptile growth by promoting cell elongation
EG1|GY1	Os01g0900400	LOC_Os01g67430	JA	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Ethylene inhibits the expression of GY1 and other genes in the JA biosynthesis pathway to reduce JA levels and enhance mesocotyl and coleoptile growth by promoting cell elongation
EG1|GY1	Os01g0900400	LOC_Os01g67430	JA biosynthesis	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Ethylene inhibits the expression of GY1 and other genes in the JA biosynthesis pathway to reduce JA levels and enhance mesocotyl and coleoptile growth by promoting cell elongation
Ehd1	Os10g0463400	LOC_Os10g32600	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	Transcript levels of three flowering regulators-Ehd1, OsMADS14, and Hd3a-were decreased in these mutants, whereas those of OsGI and Hd1 were unchanged
Ehd1	Os10g0463400	LOC_Os10g32600	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	These results indicate that OsMADS51 is a flowering promoter, particularly in SDs, and that this gene functions upstream of Ehd1, OsMADS14, and Hd3a
Ehd1	Os10g0463400	LOC_Os10g32600	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	To further investigate the relationship with other flowering promoters, we generated transgenic plants in which expression of Ehd1 or OsGI was suppressed
Ehd1	Os10g0463400	LOC_Os10g32600	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	In summary, OsMADS51 is a novel flowering promoter that transmits a SD promotion signal from OsGI to Ehd1
Ehd1	Os10g0463400	LOC_Os10g32600	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a
Ehd1	Os10g0463400	LOC_Os10g32600	height	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Ghd7 (Grain number, plant height and heading date 7) was acutely induced when phytochrome signals coincided with a photosensitive phase set differently by distinct photoperiods and this induction repressed Ehd1 the next morning
Ehd1	Os10g0463400	LOC_Os10g32600	grain	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Ghd7 (Grain number, plant height and heading date 7) was acutely induced when phytochrome signals coincided with a photosensitive phase set differently by distinct photoperiods and this induction repressed Ehd1 the next morning
Ehd1	Os10g0463400	LOC_Os10g32600	flower	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice	These observations imply that OsMADS50 and OsMADS56 function antagonistically through OsLFL1-Ehd1 in regulating LD-dependent flowering
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice	These results provide direct evidence that phytochromes inhibit flowering by affecting both Hd1 and Ehd1 flowering pathways
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice	Early heading date1 (Ehd1), an additional rice floral activator, was also highly expressed in the s73 mutant, suggesting that SE5 represses Ehd1 in wild-type plants
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Epistasis among the three major flowering time genes in rice: coordinate changes of photoperiod sensitivity, basic vegetative growth and optimum photoperiod	Since the two genes Se1 (= Hd1) and Ef1 (= Ehd1) are known to up-regulate the rice homolog of Arabidopsis FT, it is suggested that the detected epistasis may respond to diverse environments by modulating the CO/FT system conserved in flowering plants
Ehd1	Os10g0463400	LOC_Os10g32600	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	We propose that both positive (OsMADS50 and Ehd1) and negative (Hd1, phyB and Ghd7) regulators of RFT1 form a gene network that regulates LD flowering in rice
Ehd1	Os10g0463400	LOC_Os10g32600	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	Among these regulators, Ehd1, a rice-specific floral inducer, integrates multiple pathways to regulate RFT1, leading to flowering under appropriate photoperiod conditions
Ehd1	Os10g0463400	LOC_Os10g32600	leaf	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Ehd1	Os10g0463400	LOC_Os10g32600	shoot	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Ehd1	Os10g0463400	LOC_Os10g32600	flower	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB
Ehd1	Os10g0463400	LOC_Os10g32600	panicle	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Ehd1	Os10g0463400	LOC_Os10g32600	panicle	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Ehd1	Os10g0463400	LOC_Os10g32600	panicle	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Ehd1	Os10g0463400	LOC_Os10g32600	flower	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	By regulating Ehd1, RFT1, and Hd3a, Ghd8 delayed flowering under long-day conditions, but promoted flowering under short-day conditions
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Epistasis among the three major flowering time genes in rice: coordinate changes of photoperiod sensitivity, basic vegetative growth and optimum photoperiod	The comparison of the nucleotide sequences suggested that Ef1 is the same as Early heading date 1 (Ehd1)
Ehd1	Os10g0463400	LOC_Os10g32600	floral	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Increased transcription of Ghd7 under LD conditions and reduced transcription of downstream Ehd1 and FT-like genes in the ehd3 mutants suggested that Ehd3 normally functions as an LD downregulator of Ghd7 in floral induction
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Footprints of natural and artificial selection for photoperiod pathway genes in Oryza	We examined the footprints of natural and artificial selections for four major genes of the photoperiod pathway, namely PHYTOCHROME B (PhyB), HEADING DATE 1 (Hd1), HEADING DATE 3a (Hd3a), and EARLY HEADING DATE 1 (Ehd1), by investigation of the patterns of nucleotide polymorphisms in cultivated and wild rice
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Under SD conditions, flowering is promoted through the activation of FT-like genes (rice florigens) by Heading date 1 (Hd1, a rice CONSTANS homolog) and Early heading date 1 (Ehd1, with no ortholog in the Arabidopsis genome)
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	The quantitative real-time PCR assay revealed that DTH8 could down-regulate the transcriptions of Ehd1 (for Early heading date1) and Hd3a (for Heading date3a; a rice ortholog of FLOWERING LOCUS T) under long-day conditions
Ehd1	Os10g0463400	LOC_Os10g32600	floral	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	Among these regulators, Ehd1, a rice-specific floral inducer, integrates multiple pathways to regulate RFT1, leading to flowering under appropriate photoperiod conditions
Ehd1	Os10g0463400	LOC_Os10g32600	grain number	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Ghd7 (Grain number, plant height and heading date 7) was acutely induced when phytochrome signals coincided with a photosensitive phase set differently by distinct photoperiods and this induction repressed Ehd1 the next morning
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter	In this study, it was found that the flowering promoting gene Ehd1 and its putative downstream genes were all repressed by OsLFL1
Ehd1	Os10g0463400	LOC_Os10g32600	floral	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice	Early heading date1 (Ehd1), an additional rice floral activator, was also highly expressed in the s73 mutant, suggesting that SE5 represses Ehd1 in wild-type plants
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Under SD conditions, flowering is promoted through the activation of FT-like genes (rice florigens) by Heading date 1 (Hd1, a rice CONSTANS homolog) and Early heading date 1 (Ehd1, with no ortholog in the Arabidopsis genome)
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	On the other hand, under long-day (LD) conditions, flowering is delayed by the repressive function of Hd1 on FT-like genes and by downregulation of Ehd1 by the flowering repressor Ghd7 - a unique pathway in rice
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Furthermore, Ehd3 ghd7 plants flowered earlier and show higher Ehd1 transcript levels than ehd3 ghd7 plants, suggesting a Ghd7-independent role of Ehd3 in the upregulation of Ehd1
Ehd1	Os10g0463400	LOC_Os10g32600	floral	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	We also found that LHD1 could down-regulate the expression of several floral transition activators such as Ehd1, Hd3a and RFT1 under long-day conditions, but not under short-day conditions
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod	OsId1 regulates the expression of Ehd1 (Early heading date 1) and its downstream genes, including Hd3a (a rice ortholog of FT) and RFT1 (Rice Flowering Locus T1), under both SD and LD conditions
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod	In rice, the expression of Ehd1 is also controlled by the photoperiodic flowering genes OsGI (a rice ortholog of GI) and OsMADS51
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod	This study demonstrates that the activation of Ehd1 by OsId1 is required for the promotion of flowering
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	In addition, OsELF3-1 is involved in blue light signaling by activating early heading date 1 (Ehd1) expression to promote rice flowering under short-day (SD) conditions
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice	Here, we report isolation and characterization of a positive regulator of Ehd1, Early heading date 4 (Ehd4)
Ehd1	Os10g0463400	LOC_Os10g32600	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	The quantitative real-time PCR assay revealed that DTH8 could down-regulate the transcriptions of Ehd1 (for Early heading date1) and Hd3a (for Heading date3a; a rice ortholog of FLOWERING LOCUS T) under long-day conditions
Ehd1	Os10g0463400	LOC_Os10g32600	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Ehd1 and Hd3a can also be down-regulated by the photoperiodic flowering genes Ghd7 and Hd1 (a rice ortholog of CONSTANS)
Ehd1	Os10g0463400	LOC_Os10g32600	floral	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Thus, two distinct gating mechanisms--of the floral promoter Ehd1 and the floral repressor Ghd7--could enable manipulation of slight differences in day length to control Hd3a transcription with a critical day-length threshold
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1	Here, we report that the rice Early heading date 1 (Ehd1) gene, which confers SD promotion of flowering in the absence of a functional allele of Hd1, encodes a B-type response regulator that might not have an ortholog in the Arabidopsis genome
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1	Ehd1 mRNA was induced by 1-wk SD treatment, and Ehd1 may promote flowering by inducing FT-like gene expression only under SD conditions
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1	Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1
Ehd1	Os10g0463400	LOC_Os10g32600	flower	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice	As observed from osvil2, a null mutation of OsEMF2b caused late flowering by increasing OsLFL1 expression and decreasing Ehd1 expression
Ehd1	Os10g0463400	LOC_Os10g32600	floral	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	In addition, expression of the Hd3a and Rice Flowering-locus T 1 (RFT1) florigen genes was up-regulated in leaves of the Hd1 Ehd1 line at the time of the floral transition
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	To assign the position of Ehd2 within the flowering pathway of rice, we compared transcript levels of previously isolated flowering-time genes, such as Ehd1, a member of the unique pathway, Hd3a, and Rice FT-like1 (RFT1; rice florigens), between the wild-type plants and the ehd2 mutants
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Severely reduced expression of these genes in ehd2 under both short- and long-day conditions suggests that Ehd2 acts as a flowering promoter mainly by up-regulating Ehd1 and by up-regulating the downstream Hd3a and RFT1 genes in the unique genetic network of photoperiodic flowering in rice
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	We also found that the type of Hd3a promoter and the level of Ehd1 expression contribute to the diversity in flowering time and Hd3a expression level
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes)
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod	OsId1 regulates the expression of Ehd1 (Early heading date 1) and its downstream genes, including Hd3a (a rice ortholog of FT) and RFT1 (Rice Flowering Locus T1), under both SD and LD conditions
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod
Ehd1	Os10g0463400	LOC_Os10g32600	meristem	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We grew four rice lines having different flowering time genotypes (hd1 ehd1, hd1 Ehd1, Hd1 ehd1 and Hd1 Ehd1) under distinct photoperiod conditions
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	In addition, expression of the Hd3a and Rice Flowering-locus T 1 (RFT1) florigen genes was up-regulated in leaves of the Hd1 Ehd1 line at the time of the floral transition
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Ehd1	Os10g0463400	LOC_Os10g32600	shoot apical meristem	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes)
Ehd1	Os10g0463400	LOC_Os10g32600	flower	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	This indicates that LHD1 may delay flowering by repressing the expression of Ehd1, Hd3a and RFT1 under long-day conditions
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1	Here, we report that the rice Early heading date 1 (Ehd1) gene, which confers SD promotion of flowering in the absence of a functional allele of Hd1, encodes a B-type response regulator that might not have an ortholog in the Arabidopsis genome
Ehd1	Os10g0463400	LOC_Os10g32600	spikelet	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Ehd1	Os10g0463400	LOC_Os10g32600	flowering time	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	We also found that the type of Hd3a promoter and the level of Ehd1 expression contribute to the diversity in flowering time and Hd3a expression level
Ehd1	Os10g0463400	LOC_Os10g32600	flowering time	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice	However, in rice, there is a unique Ehd1-dependent flowering pathway that is Hd1-independent
Ehd1	Os10g0463400	LOC_Os10g32600	flower	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice	We conclude that Ehd4 is a novel Oryza-genus-specific regulator of Ehd1, and it plays an essential role in photoperiodic control of flowering time in rice
Ehd1	Os10g0463400	LOC_Os10g32600	yield	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Ehd1	Os10g0463400	LOC_Os10g32600	flower	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	In addition, OsELF3-1 is involved in blue light signaling by activating early heading date 1 (Ehd1) expression to promote rice flowering under short-day (SD) conditions
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	The expression of Hd3a and FTL decreased in these transgenic plants, whereas the expression of Hd1, Early heading date 1 (Ehd1), OsMADS51, and OsMADS50 did not significantly change
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Hd3a expression is induced by Ehd1 (Early heading date 1) expression when blue light coincides with the morning phase set by OsGIGANTEA(OsGI)-dependent circadian clocks
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Ghd7 (Grain number, plant height and heading date 7) was acutely induced when phytochrome signals coincided with a photosensitive phase set differently by distinct photoperiods and this induction repressed Ehd1 the next morning
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	The Early heading date 1 (Ehd1) which promotes the RFT1, was up-regulated by DTH3 in both LD and SD conditions
Ehd1	Os10g0463400	LOC_Os10g32600	heading date	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1
Ehd1	Os10g0463400	LOC_Os10g32600	flowering time	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice	We conclude that Ehd4 is a novel Oryza-genus-specific regulator of Ehd1, and it plays an essential role in photoperiodic control of flowering time in rice
Ehd1	Os10g0463400	LOC_Os10g32600	flowering time	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We grew four rice lines having different flowering time genotypes (hd1 ehd1, hd1 Ehd1, Hd1 ehd1 and Hd1 Ehd1) under distinct photoperiod conditions
Ehd1	Os10g0463400	LOC_Os10g32600	flowering time	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Ehd1	Os10g0463400	LOC_Os10g32600	flowering time	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Ehd1	Os10g0463400	LOC_Os10g32600	spikelet number	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Ehd1	Os10g0463400	LOC_Os10g32600	floral	Genetic interactions between diverged alleles of Early heading date 1 (Ehd1) and Heading date 3a (Hd3a)/ RICE FLOWERING LOCUS T1 (RFT1) control differential heading and contribute to regional adaptation in rice (Oryza sativa).	We identified a nonfunctional RFT1 allele (rft1); the lines carrying homozygous ehd1 and Hd3a/rft1 failed to induce the floral transition under SD and LD conditions
Ehd1	Os10g0463400	LOC_Os10g32600	flowering time	Both Hd1 and Ehd1 are important for artificial selection of flowering time in cultivated rice.	Both Hd1 and Ehd1 are important for artificial selection of flowering time in cultivated rice.
Ehd1	Os10g0463400	LOC_Os10g32600	flowering time	Both Hd1 and Ehd1 are important for artificial selection of flowering time in cultivated rice.	Both Hd1 and Ehd1 may be important during artificial selection for flowering time, especially in a subtropical region such as Taiwan
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	flower	A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7	Ghd10 is orthologous to INDETERMINATE1 (ID1), which promotes flowering in maize (Zea mays) and is identical to the previously cloned genes Rice Indeterminate1 (RID1), Early heading date2 (Ehd2) and OsId1
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	reproductive	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	Here, we show that the Rice Indeterminate 1 (RID1) gene acts as the master switch for the transition from the vegetative to reproductive phase
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	floral	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	This phenotype in the ehd2 mutants suggests that Ehd2 is pivotal for the floral transition in rice
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	floral	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	In the first, RID1 is controlling the phase transition and initiation of floral induction
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	floral	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	transcription factor	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	RID1 encodes a Cys-2/His-2-type zinc finger transcription factor that does not have an ortholog in Arabidopsis spp
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	transcription factor	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	flower	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	A RID1 knockout (rid1), mutated by T-DNA insertion, never headed after growing for >500 days under a range of growth conditions and is thus referred to as a never-flowering phenotype
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	flower	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	A model was proposed to place RID1 in the molecular pathways of flowering regulation in rice, for which there are two indispensable elements
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	flower	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	Once the phase transition is induced with the activation of RID1, flowering signal is transduced and regulated through the various pathways and eventually integrated with FT-like proteins to induce flowering
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	yield	A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7	A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	We discovered an early heading date2 (ehd2) mutant that shows extremely late flowering under both short- and long-day conditions in line with a background deficient in Heading date1 (Hd1), a rice CONSTANS ortholog that belongs to the conserved pathway
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Map-based cloning revealed that Ehd2 encodes a putative transcription factor with zinc finger motifs orthologous to the INDETERMINATE1 (ID1) gene, which promotes flowering in maize (Zea mays)
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	To assign the position of Ehd2 within the flowering pathway of rice, we compared transcript levels of previously isolated flowering-time genes, such as Ehd1, a member of the unique pathway, Hd3a, and Rice FT-like1 (RFT1; rice florigens), between the wild-type plants and the ehd2 mutants
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Severely reduced expression of these genes in ehd2 under both short- and long-day conditions suggests that Ehd2 acts as a flowering promoter mainly by up-regulating Ehd1 and by up-regulating the downstream Hd3a and RFT1 genes in the unique genetic network of photoperiodic flowering in rice
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	growth	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	A RID1 knockout (rid1), mutated by T-DNA insertion, never headed after growing for >500 days under a range of growth conditions and is thus referred to as a never-flowering phenotype
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	shoot	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Ehd2 mRNA in rice tissues accumulated most abundantly in developing leaves, but was present at very low levels around the shoot apex and in roots, patterns that are similar to those of ID1
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	heading date	A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7	Ghd10 is orthologous to INDETERMINATE1 (ID1), which promotes flowering in maize (Zea mays) and is identical to the previously cloned genes Rice Indeterminate1 (RID1), Early heading date2 (Ehd2) and OsId1
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	vegetative	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	Here, we show that the Rice Indeterminate 1 (RID1) gene acts as the master switch for the transition from the vegetative to reproductive phase
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	vegetative	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	heading date	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	We discovered an early heading date2 (ehd2) mutant that shows extremely late flowering under both short- and long-day conditions in line with a background deficient in Heading date1 (Hd1), a rice CONSTANS ortholog that belongs to the conserved pathway
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	transcription factor	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Map-based cloning revealed that Ehd2 encodes a putative transcription factor with zinc finger motifs orthologous to the INDETERMINATE1 (ID1) gene, which promotes flowering in maize (Zea mays)
Ehd2|RID1	Os10g0419200	LOC_Os10g28330	root	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Ehd2 mRNA in rice tissues accumulated most abundantly in developing leaves, but was present at very low levels around the shoot apex and in roots, patterns that are similar to those of ID1
Ehd3	Os08g0105000	LOC_Os08g01420	heading date	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	Transcript levels of OsGI, phytochrome genes, and Early heading date3 (Ehd3), which function upstream of Ghd7, were unchanged in the mutant
Ehd3	Os08g0105000	LOC_Os08g01420	heading date	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	We report here that an early heading date 3 (ehd3) mutant flowered later than wild-type plants, particularly under LD conditions, regardless of the Hd1-deficient background
Ehd3	Os08g0105000	LOC_Os08g01420	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	We report here that an early heading date 3 (ehd3) mutant flowered later than wild-type plants, particularly under LD conditions, regardless of the Hd1-deficient background
Ehd3	Os08g0105000	LOC_Os08g01420	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	To identify the role of Ehd3 within the gene regulatory network for rice flowering, we compared the transcript levels of genes related to rice flowering in wild-type plants and ehd3 mutants
Ehd3	Os08g0105000	LOC_Os08g01420	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Furthermore, Ehd3 ghd7 plants flowered earlier and show higher Ehd1 transcript levels than ehd3 ghd7 plants, suggesting a Ghd7-independent role of Ehd3 in the upregulation of Ehd1
Ehd3	Os08g0105000	LOC_Os08g01420	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Our results demonstrate that the PHD-finger gene Ehd3 acts as a promoter in the unique genetic pathway responsible for photoperiodic flowering in rice
Ehd3	Os08g0105000	LOC_Os08g01420	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering
Ehd3	Os08g0105000	LOC_Os08g01420	floral	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Increased transcription of Ghd7 under LD conditions and reduced transcription of downstream Ehd1 and FT-like genes in the ehd3 mutants suggested that Ehd3 normally functions as an LD downregulator of Ghd7 in floral induction
Ehd4	Os03g0112700	LOC_Os03g02160	flower	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice	ehd4 mutants showed a never flowering phenotype under natural long-day conditions
Ehd4	Os03g0112700	LOC_Os03g02160	flower	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice	We conclude that Ehd4 is a novel Oryza-genus-specific regulator of Ehd1, and it plays an essential role in photoperiodic control of flowering time in rice
Ehd4	Os03g0112700	LOC_Os03g02160	flower	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice
Ehd4	Os03g0112700	LOC_Os03g02160	flowering time	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice	We conclude that Ehd4 is a novel Oryza-genus-specific regulator of Ehd1, and it plays an essential role in photoperiodic control of flowering time in rice
Ehd4	Os03g0112700	LOC_Os03g02160	heading date	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice	Here, we report isolation and characterization of a positive regulator of Ehd1, Early heading date 4 (Ehd4)
eIF-1	Os07g0529800	LOC_Os07g34589	salt stress	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice	The eIF-1 over-expressing lines showed improved growth under salt stress that was correlated with maintenance of photosynthetic activity and reduced Na(+) and Cl(-) accumulation in leaves
eIF-1	Os07g0529800	LOC_Os07g34589	salt	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice	In a search for novel molecular mechanisms involved in salt acclimation, transcript analyses revealed increased expression of a SUI-homologous translation initiation factor eIF-1 in the salt-tolerant grass species Festuca rubra ssp
eIF-1	Os07g0529800	LOC_Os07g34589	salt	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice	To further examine the role of eIF-1 in salt tolerance, transgenic rice plants were generated that over-express this factor under the control of the CaMV-35S promoter
eIF-1	Os07g0529800	LOC_Os07g34589	salt	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice	The eIF-1 over-expressing lines showed improved growth under salt stress that was correlated with maintenance of photosynthetic activity and reduced Na(+) and Cl(-) accumulation in leaves
eIF-1	Os07g0529800	LOC_Os07g34589	salt	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice	Our data suggest that eIF-1 has a central function in salt-stress adaptation in rice by regulating ion accumulation and the intracellular redox status
eIF-1	Os07g0529800	LOC_Os07g34589	leaf	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice	Upon analysis of the cell specificity of eIF-1 transcription by in situ polymerase chain reaction (PCR), predominant signals were detected in rice leaf mesophyll
eIF-1	Os07g0529800	LOC_Os07g34589	salt tolerance	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice	To further examine the role of eIF-1 in salt tolerance, transgenic rice plants were generated that over-express this factor under the control of the CaMV-35S promoter
eIF-1	Os07g0529800	LOC_Os07g34589	homeostasis	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice
eIF-1	Os07g0529800	LOC_Os07g34589	growth	The SUI-homologous translation initiation factor eIF-1 is involved in regulation of ion homeostasis in rice	The eIF-1 over-expressing lines showed improved growth under salt stress that was correlated with maintenance of photosynthetic activity and reduced Na(+) and Cl(-) accumulation in leaves
EIF3H	Os04g0376500	LOC_Os04g30780	fertility	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	Furthermore, the pollen that developed was completely sterile, which was correlated with the altered expression of two Rf (fertility restorer)-like genes that encode pentatricopeptide repeat-containing proteins OsPPR676 and OsPPR920, translational initiation factors OseIF3e and OseIF3h, and the heat shock protein OsHSP82
EIF3H	Os04g0376500	LOC_Os04g30780	pollen	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	Furthermore, the pollen that developed was completely sterile, which was correlated with the altered expression of two Rf (fertility restorer)-like genes that encode pentatricopeptide repeat-containing proteins OsPPR676 and OsPPR920, translational initiation factors OseIF3e and OseIF3h, and the heat shock protein OsHSP82
EIF3H	Os04g0376500	LOC_Os04g30780	sterile	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	Furthermore, the pollen that developed was completely sterile, which was correlated with the altered expression of two Rf (fertility restorer)-like genes that encode pentatricopeptide repeat-containing proteins OsPPR676 and OsPPR920, translational initiation factors OseIF3e and OseIF3h, and the heat shock protein OsHSP82
eIF4G	Os07g0555200	LOC_Os07g36940	resistance	Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus.	Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus.
eIF4G	Os07g0555200	LOC_Os07g36940	resistance	Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus.	 To develop new sources of resistance to RTD, mutations in eIF4G were generated using the CRISPR/Cas9 system in the RTSV-susceptible variety IR64, widely grown across tropical Asia
eIF4G	Os07g0555200	LOC_Os07g36940	resistance	Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus.	 Among various mutated eIF4G alleles examined, only those resulting in in-frame mutations in SVLFPNLAGKS residues (mainly NL), adjacent to the YVV residues, conferred resistance
eIF4G	Os07g0555200	LOC_Os07g36940	resistance	Genome Editing of Rice eIF4G Loci Confers Partial Resistance to Rice Black-Streaked Dwarf Virus	Genome Editing of Rice eIF4G Loci Confers Partial Resistance to Rice Black-Streaked Dwarf Virus
eIF4G	Os07g0555200	LOC_Os07g36940	resistance	Genome Editing of Rice eIF4G Loci Confers Partial Resistance to Rice Black-Streaked Dwarf Virus	 To develop novel resources for resistance to RBSDV through CRISPR/Cas9-mediated genome editing, a guide RNA sequence targeting exon 1 of eIF4G was designed and cloned into a binary vector, pHUE401
eIF4G	Os07g0555200	LOC_Os07g36940	resistance	Genome Editing of Rice eIF4G Loci Confers Partial Resistance to Rice Black-Streaked Dwarf Virus	 These results indicate that site-specific mutation of rice eIF4G successfully conferred partial resistance specific to RBSDV associated with less transcription of eIF4G in mutants
eIF4G	Os07g0555200	LOC_Os07g36940	dwarf	Genome Editing of Rice eIF4G Loci Confers Partial Resistance to Rice Black-Streaked Dwarf Virus	Genome Editing of Rice eIF4G Loci Confers Partial Resistance to Rice Black-Streaked Dwarf Virus
eIF4G	Os07g0555200	LOC_Os07g36940	rice stripe virus	Genome Editing of Rice eIF4G Loci Confers Partial Resistance to Rice Black-Streaked Dwarf Virus	 However, the eif4g mutant plants showed the same sensitivity to rice stripe virus (RSV) infection as wild-type plants
EL2	Os03g0107700	LOC_Os03g01740	defense response	Two novel genes rapidly and transiently activated in suspension-cultured rice cells by treatment with N-acetylchitoheptaose, a biotic elicitor for phytoalexin production	As shown in Fig2, a low level of mRNA for EL2 was detected in the non-treated cells, impling that EL2 gene product might play some role(s) in non-differentiated calli as well as in the defense response.
EL2	Os03g0107700	LOC_Os03g01740	non-differentiated calli	Two novel genes rapidly and transiently activated in suspension-cultured rice cells by treatment with N-acetylchitoheptaose, a biotic elicitor for phytoalexin production	As shown in Fig2, a low level of mRNA for EL2 was detected in the non-treated cells, impling that EL2 gene product might play some role(s) in non-differentiated calli as well as in the defense response.
EL5	Os02g0559800	LOC_Os02g35329	defense response	EL5, a rice N-acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b	These results strongly suggest that EL5 and OsUBC5b have roles in plant defense response through the turnover of protein(s) via the ubiquitin/proteasome system
EL5	Os02g0559800	LOC_Os02g35329	cell death	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	Plants expressing EL5C153A and EL5W165A, which encode an inactive E3, showed a rootless phenotype accompanied by cell death in root primordia, and those expressing EL5V162A, with moderately impaired E3 activity, formed short crown roots with necrotic lateral roots
EL5	Os02g0559800	LOC_Os02g35329	phytohormone	EL5 is involved in root development as an anti-cell death ubiquitin ligase	We hypothesize that EL5 might be responsible for mediating the degradation of cytotoxic proteins produced in root cells after the actions of phytohormones
EL5	Os02g0559800	LOC_Os02g35329	root	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	Plants expressing EL5C153A and EL5W165A, which encode an inactive E3, showed a rootless phenotype accompanied by cell death in root primordia, and those expressing EL5V162A, with moderately impaired E3 activity, formed short crown roots with necrotic lateral roots
EL5	Os02g0559800	LOC_Os02g35329	root	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	The dominant-negative phenotype was specifically observed in root meristems where EL5 is expressed, and not recovered by exogenous auxin
EL5	Os02g0559800	LOC_Os02g35329	root	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	Deletion of the transmembrane domain prevented the EL5 from localizing in the membrane and from exerting an inhibitory effect on root formation
EL5	Os02g0559800	LOC_Os02g35329	root	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	We concluded that EL5 plays a major role as a membrane-anchored E3 for the maintenance of cell viability after the initiation of root primordial formation
EL5	Os02g0559800	LOC_Os02g35329	root	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice
EL5	Os02g0559800	LOC_Os02g35329	root development	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice
EL5	Os02g0559800	LOC_Os02g35329	meristem	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	The dominant-negative phenotype was specifically observed in root meristems where EL5 is expressed, and not recovered by exogenous auxin
EL5	Os02g0559800	LOC_Os02g35329	root	EL5 is involved in root development as an anti-cell death ubiquitin ligase	Recent analyses revealed that EL5 plays a crucial role as an E3 in the maintenance of cell viability during root development in rice
EL5	Os02g0559800	LOC_Os02g35329	root	EL5 is involved in root development as an anti-cell death ubiquitin ligase	We hypothesize that EL5 might be responsible for mediating the degradation of cytotoxic proteins produced in root cells after the actions of phytohormones
EL5	Os02g0559800	LOC_Os02g35329	root	EL5 is involved in root development as an anti-cell death ubiquitin ligase	EL5 is involved in root development as an anti-cell death ubiquitin ligase
EL5	Os02g0559800	LOC_Os02g35329	defense	Isolation and analysis of expression mechanisms of a rice gene, EL5, which shows structural similarity to ATL family from Arabidopsis, in response to N-acetylchitooligosaccharide elicitor	The structural specificity of the elicitor required for the expression of EL5 was consistent with other defense reactions observed in the experimental system, indicating that the elicitor signal to EL5 is transmitted through a single class of receptor-mediated recognition events
EL5	Os02g0559800	LOC_Os02g35329	defense	EL5, a rice N-acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b	These results strongly suggest that EL5 and OsUBC5b have roles in plant defense response through the turnover of protein(s) via the ubiquitin/proteasome system
EL5	Os02g0559800	LOC_Os02g35329	lateral root	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	Plants expressing EL5C153A and EL5W165A, which encode an inactive E3, showed a rootless phenotype accompanied by cell death in root primordia, and those expressing EL5V162A, with moderately impaired E3 activity, formed short crown roots with necrotic lateral roots
EL5	Os02g0559800	LOC_Os02g35329	auxin	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	The dominant-negative phenotype was specifically observed in root meristems where EL5 is expressed, and not recovered by exogenous auxin
EL5	Os02g0559800	LOC_Os02g35329	crown	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	Plants expressing EL5C153A and EL5W165A, which encode an inactive E3, showed a rootless phenotype accompanied by cell death in root primordia, and those expressing EL5V162A, with moderately impaired E3 activity, formed short crown roots with necrotic lateral roots
EL5	Os02g0559800	LOC_Os02g35329	cell death	EL5 is involved in root development as an anti-cell death ubiquitin ligase	We also discuss the possible role of EL5 as an anti-cell death enzyme
EL5	Os02g0559800	LOC_Os02g35329	cell death	EL5 is involved in root development as an anti-cell death ubiquitin ligase	EL5 is involved in root development as an anti-cell death ubiquitin ligase
EL5	Os02g0559800	LOC_Os02g35329	crown root	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice	Plants expressing EL5C153A and EL5W165A, which encode an inactive E3, showed a rootless phenotype accompanied by cell death in root primordia, and those expressing EL5V162A, with moderately impaired E3 activity, formed short crown roots with necrotic lateral roots
EL5	Os02g0559800	LOC_Os02g35329	root development	EL5 is involved in root development as an anti-cell death ubiquitin ligase	Recent analyses revealed that EL5 plays a crucial role as an E3 in the maintenance of cell viability during root development in rice
EL5	Os02g0559800	LOC_Os02g35329	root development	EL5 is involved in root development as an anti-cell death ubiquitin ligase	EL5 is involved in root development as an anti-cell death ubiquitin ligase
EL5	Os02g0559800	LOC_Os02g35329	root	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.
EL5	Os02g0559800	LOC_Os02g35329	root	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	Root formation in rice transformants overexpressing mutated EL5 (mEL5) was severely inhibited because of meristematic cell death
EL5	Os02g0559800	LOC_Os02g35329	nitrogen	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.
EL5	Os02g0559800	LOC_Os02g35329	nitrogen	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	These results indicate that impairment of EL5 function activates nitrogen signaling despite the absence of a nitrogen source
EL5	Os02g0559800	LOC_Os02g35329	cell death	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.
EL5	Os02g0559800	LOC_Os02g35329	cell death	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	Root formation in rice transformants overexpressing mutated EL5 (mEL5) was severely inhibited because of meristematic cell death
EL5	Os02g0559800	LOC_Os02g35329	Ubiquitin	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.
EMP5|OsEMP5	Os01g0959600	LOC_Os01g72930	pericarp	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize	Here, we report the molecular characterization of the empty pericarp5 (emp5) mutants in maize (Zea mays)
EMP5|OsEMP5	Os01g0959600	LOC_Os01g72930	growth	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize	EMP5 knockdown expression in transgenics resulted in slow growth and defective seeds
EMP5|OsEMP5	Os01g0959600	LOC_Os01g72930	seed development	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize	These results demonstrate that Emp5 encodes a PPR-DYW protein that is required for the editing of multiple transcripts in mitochondria, and the editing events, particularly the C-to-U editing at the rpl16-458 site, are critical to the mitochondrial functions and, hence, to seed development in maize
EMP5|OsEMP5	Os01g0959600	LOC_Os01g72930	endosperm	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize	Null mutation of Emp5 results in abortion of embryo and endosperm development at early stages
EMP5|OsEMP5	Os01g0959600	LOC_Os01g72930	seed	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize	EMP5 knockdown expression in transgenics resulted in slow growth and defective seeds
EMP5|OsEMP5	Os01g0959600	LOC_Os01g72930	seed	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize	These results demonstrate that Emp5 encodes a PPR-DYW protein that is required for the editing of multiple transcripts in mitochondria, and the editing events, particularly the C-to-U editing at the rpl16-458 site, are critical to the mitochondrial functions and, hence, to seed development in maize
EMP5|OsEMP5	Os01g0959600	LOC_Os01g72930	mitochondria	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize	Analysis of the mitochondrial transcripts revealed that loss of the EMP5 function abolishes the C-to-U editing of ribosomal protein L16 at the rpl16-458 site (100% edited in the wild type), decreases the editing at nine sites in NADH dehydrogenase9 (nad9), cytochrome c oxidase3 (cox3), and ribosomal protein S12 (rps12), and surprisingly increases the editing at five sites of ATP synthase F0 subunit a (atp6), apocytochrome b (cob), nad1, and rpl16
EMP5|OsEMP5	Os01g0959600	LOC_Os01g72930	mitochondria	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize	Analysis of the ortholog in rice (Oryza sativa) indicates that rice EMP5 has a conserved function in C-to-U editing of the rice mitochondrial rpl16-458 site
EMP5|OsEMP5	Os01g0959600	LOC_Os01g72930	mitochondria	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize	These results demonstrate that Emp5 encodes a PPR-DYW protein that is required for the editing of multiple transcripts in mitochondria, and the editing events, particularly the C-to-U editing at the rpl16-458 site, are critical to the mitochondrial functions and, hence, to seed development in maize
ENAC1	Os01g0862800	LOC_Os01g64310	drought	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	Comparative time-course expression analysis indicated that ENAC1 expression, similar with OsDREB1A, was induced very quickly by various abiotic stresses including salt, drought, cold, and exogenous abscisic acid
ENAC1	Os01g0862800	LOC_Os01g64310	ABA	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	The promoter sequence of ENAC1 harbors several cis-elements including ABA response elements, but the well-known dehydration responsive element/C-repeat element is absent
ENAC1	Os01g0862800	LOC_Os01g64310	abiotic stress	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	In this research, a full-length cDNA named ENAC1 (early NAC-domain protein induced by abiotic stress 1) was isolated from rice
ENAC1	Os01g0862800	LOC_Os01g64310	abiotic stress	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	Comparative time-course expression analysis indicated that ENAC1 expression, similar with OsDREB1A, was induced very quickly by various abiotic stresses including salt, drought, cold, and exogenous abscisic acid
ENAC1	Os01g0862800	LOC_Os01g64310	abiotic stress	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	However, the induction of ENAC1 by abiotic stress was transient and lasted up to 3 h, whereas that of OsDREB1A maintained longer
ENAC1	Os01g0862800	LOC_Os01g64310	abiotic stress	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	Taken together, ENAC1 may be an early transcription activator of stress responses and function in the regulation of NACRS-mediated gene expression under abiotic stress
ENAC1	Os01g0862800	LOC_Os01g64310	abiotic stress	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)
ENAC1	Os01g0862800	LOC_Os01g64310	salt	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	Comparative time-course expression analysis indicated that ENAC1 expression, similar with OsDREB1A, was induced very quickly by various abiotic stresses including salt, drought, cold, and exogenous abscisic acid
ENAC1	Os01g0862800	LOC_Os01g64310	transcription factor	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)
ENL1	Os04g0692750	LOC_Os04g59624	ENDOSPERMLESS 1	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development
ENL1	Os04g0692750	LOC_Os04g59624	syncytial endosperm development	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development
ENL1	Os04g0692750	LOC_Os04g59624	endosperm development	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development
ENL1	Os04g0692750	LOC_Os04g59624	endosperm	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development	Rice endospermless 1 (enl1) develops seeds lacking an endosperm but carrying a functional embryo.
ENL1	Os04g0692750	LOC_Os04g59624	cytoplasm	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development	ENL1-Venus (enhanced YFP) localizes to the cytoplasm during interphase but moves to the chromosome arms during mitosis.
ENL1	Os04g0692750	LOC_Os04g59624	mitosis	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development	ENL1-Venus (enhanced YFP) localizes to the cytoplasm during interphase but moves to the chromosome arms during mitosis.
EP	Os09g0441400	LOC_Os09g26960	grain yield	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	The breeding of japonica varieties with erect-pose panicle (EP) has recently progressed in the northern part of China, because these varieties exhibit a far higher grain yield than the varieties with normal-pose panicle (NP)
EP	Os09g0441400	LOC_Os09g26960	grain yield	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	Experimental results showed that EP gene markedly enhanced grain yield, chiefly by increasing number of secondary branches and number of grains on the secondary branch
EP	Os09g0441400	LOC_Os09g26960	grain yield	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)
EP	Os09g0441400	LOC_Os09g26960	yield	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	The breeding of japonica varieties with erect-pose panicle (EP) has recently progressed in the northern part of China, because these varieties exhibit a far higher grain yield than the varieties with normal-pose panicle (NP)
EP	Os09g0441400	LOC_Os09g26960	yield	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	Experimental results showed that EP gene markedly enhanced grain yield, chiefly by increasing number of secondary branches and number of grains on the secondary branch
EP	Os09g0441400	LOC_Os09g26960	yield	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)
EP	Os09g0441400	LOC_Os09g26960	erect	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	The breeding of japonica varieties with erect-pose panicle (EP) has recently progressed in the northern part of China, because these varieties exhibit a far higher grain yield than the varieties with normal-pose panicle (NP)
EP	Os09g0441400	LOC_Os09g26960	erect	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)
EP	Os09g0441400	LOC_Os09g26960	grain	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	The breeding of japonica varieties with erect-pose panicle (EP) has recently progressed in the northern part of China, because these varieties exhibit a far higher grain yield than the varieties with normal-pose panicle (NP)
EP	Os09g0441400	LOC_Os09g26960	grain	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	Experimental results showed that EP gene markedly enhanced grain yield, chiefly by increasing number of secondary branches and number of grains on the secondary branch
EP	Os09g0441400	LOC_Os09g26960	grain	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	EP gene also produced a remarkable increase in grain density
EP	Os09g0441400	LOC_Os09g26960	grain	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)
EP	Os09g0441400	LOC_Os09g26960	breeding	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	The breeding of japonica varieties with erect-pose panicle (EP) has recently progressed in the northern part of China, because these varieties exhibit a far higher grain yield than the varieties with normal-pose panicle (NP)
EP	Os09g0441400	LOC_Os09g26960	panicle	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	The breeding of japonica varieties with erect-pose panicle (EP) has recently progressed in the northern part of China, because these varieties exhibit a far higher grain yield than the varieties with normal-pose panicle (NP)
EP	Os09g0441400	LOC_Os09g26960	panicle	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	Based on previous studies, map-based cloning of EP locus was conducted using Liaojing5, Toyonishiki, their F(2) population, and a pair of near-isogenic lines for EP locus (ZF14 and WF14) derived from the cross between the two varieties; consequently, the STS marker H90 was found to completely cosegregate with panicle pose
EP	Os09g0441400	LOC_Os09g26960	panicle	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)	Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.)
EP3|LP	Os02g0260200	LOC_Os02g15950	erect	Map-based cloning of the ERECT PANICLE 3 gene in rice	Genetic analysis revealed that the erect panicle phenotype was controlled by a single recessive mutation designated erect panicle 3 (ep3)
EP3|LP	Os02g0260200	LOC_Os02g15950	erect	Map-based cloning of the ERECT PANICLE 3 gene in rice	A line carrying a T-DNA insertion in LOC_ Os02g15950 was obtained and shown to have the same phenotype as the ep3 mutant, thus confirming the identification of LOC_Os02g15950 as the ERECT PANICLE 3 (EP3) gene
EP3|LP	Os02g0260200	LOC_Os02g15950	erect	Map-based cloning of the ERECT PANICLE 3 gene in rice	The ep3 mutation causes a significant increase in the number of small vascular bundles as well as the thickness of parenchyma in the peduncle, which results in the erect panicle phenotype
EP3|LP	Os02g0260200	LOC_Os02g15950	vascular bundle	Map-based cloning of the ERECT PANICLE 3 gene in rice	The ep3 mutation causes a significant increase in the number of small vascular bundles as well as the thickness of parenchyma in the peduncle, which results in the erect panicle phenotype
EP3|LP	Os02g0260200	LOC_Os02g15950	architecture	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	We report herein an in-depth characterization of two allelic larger panicle (lp) mutants that show significantly increased panicle size as well as improved plant architecture
EP3|LP	Os02g0260200	LOC_Os02g15950	architecture	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	These results suggest that LP plays an important role in regulating plant architecture, particularly in regulating panicle architecture, thereby representing promising targets for genetic improvement of grain production plants
EP3|LP	Os02g0260200	LOC_Os02g15950	panicle size	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	We report herein an in-depth characterization of two allelic larger panicle (lp) mutants that show significantly increased panicle size as well as improved plant architecture
EP3|LP	Os02g0260200	LOC_Os02g15950	panicle architecture	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	These results suggest that LP plays an important role in regulating plant architecture, particularly in regulating panicle architecture, thereby representing promising targets for genetic improvement of grain production plants
EP3|LP	Os02g0260200	LOC_Os02g15950	cytokinin	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	Quantitative real-time PCR results show that OsCKX2, which encodes cytokinin oxidase/dehydrogenase, is down-regulated evidently in mutants, implying that LP might be involved in modulating cytokinin level in plant tissues
EP3|LP	Os02g0260200	LOC_Os02g15950	panicle	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	We report herein an in-depth characterization of two allelic larger panicle (lp) mutants that show significantly increased panicle size as well as improved plant architecture
EP3|LP	Os02g0260200	LOC_Os02g15950	panicle	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	Map-based cloning reveals that LARGER PANICLE (LP) encodes a Kelch repeat-containing F-box protein
EP3|LP	Os02g0260200	LOC_Os02g15950	panicle	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	These results suggest that LP plays an important role in regulating plant architecture, particularly in regulating panicle architecture, thereby representing promising targets for genetic improvement of grain production plants
EP3|LP	Os02g0260200	LOC_Os02g15950	grain	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	These results suggest that LP plays an important role in regulating plant architecture, particularly in regulating panicle architecture, thereby representing promising targets for genetic improvement of grain production plants
EP3|LP	Os02g0260200	LOC_Os02g15950	panicle	Map-based cloning of the ERECT PANICLE 3 gene in rice	Genetic analysis revealed that the erect panicle phenotype was controlled by a single recessive mutation designated erect panicle 3 (ep3)
EP3|LP	Os02g0260200	LOC_Os02g15950	panicle	Map-based cloning of the ERECT PANICLE 3 gene in rice	A line carrying a T-DNA insertion in LOC_ Os02g15950 was obtained and shown to have the same phenotype as the ep3 mutant, thus confirming the identification of LOC_Os02g15950 as the ERECT PANICLE 3 (EP3) gene
EP3|LP	Os02g0260200	LOC_Os02g15950	panicle	Map-based cloning of the ERECT PANICLE 3 gene in rice	The ep3 mutation causes a significant increase in the number of small vascular bundles as well as the thickness of parenchyma in the peduncle, which results in the erect panicle phenotype
EP3|LP	Os02g0260200	LOC_Os02g15950	leaf	Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.	This anatomical characteristic may account for the observed decrease in leaf photosynthesis and provides evidence that EP3 plays a role in regulating stomatal guard cell development
EP3|LP	Os02g0260200	LOC_Os02g15950	flower	Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.	Ectopic expression of the Os02g15950 coding sequence, driven by the HWS (At3g61950) promoter, rescued the hws-1 flower phenotype in Arabidopsis confirming that EP3 is a functional orthologue of HWS
EP3|LP	Os02g0260200	LOC_Os02g15950	photosynthesis	Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.	This anatomical characteristic may account for the observed decrease in leaf photosynthesis and provides evidence that EP3 plays a role in regulating stomatal guard cell development
EP3|LP	Os02g0260200	LOC_Os02g15950	stomatal	Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.	However, both ep3 mutant plants and transgenic lines that have a T-DNA insertion within the Os02g15950 (EP3) gene exhibit smaller stomatal guard cells compared with their wild-type controls
EP3|LP	Os02g0260200	LOC_Os02g15950	stomatal	Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.	This anatomical characteristic may account for the observed decrease in leaf photosynthesis and provides evidence that EP3 plays a role in regulating stomatal guard cell development
EP3|LP	Os02g0260200	LOC_Os02g15950	development	Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.	This anatomical characteristic may account for the observed decrease in leaf photosynthesis and provides evidence that EP3 plays a role in regulating stomatal guard cell development
EP3|LP	Os02g0260200	LOC_Os02g15950	root	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	We have identified the putative orthologue genes of the rice microRNA pathway for ORYZA SATIVA DAWDLE (OsDDL) and ORYZA SATIVA SERRATE (OsSE), and demonstrated that EP3 and OsFBK1 affect their transcript levels as well as those of CROWN ROOT DEFECT 1/ORYZA SATIVA Exportin-5 HASTY (CRD1/OsHST), ORYZA SATIVA DICER-LIKE 1 (OsDCL) and ORYZA SATIVA WEAVY LEAF1 (OsWAF1)
EP3|LP	Os02g0260200	LOC_Os02g15950	flower	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
EP3|LP	Os02g0260200	LOC_Os02g15950	pollen	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
EP3|LP	Os02g0260200	LOC_Os02g15950	grain	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
EP3|LP	Os02g0260200	LOC_Os02g15950	grain size	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
EP3|LP	Os02g0260200	LOC_Os02g15950	floral	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
EP3|LP	Os02g0260200	LOC_Os02g15950	architecture	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
EP3|LP	Os02g0260200	LOC_Os02g15950	floral organ	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
EP3|LP	Os02g0260200	LOC_Os02g15950	flower development	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
EP3|LP	Os02g0260200	LOC_Os02g15950	crown	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	We have identified the putative orthologue genes of the rice microRNA pathway for ORYZA SATIVA DAWDLE (OsDDL) and ORYZA SATIVA SERRATE (OsSE), and demonstrated that EP3 and OsFBK1 affect their transcript levels as well as those of CROWN ROOT DEFECT 1/ORYZA SATIVA Exportin-5 HASTY (CRD1/OsHST), ORYZA SATIVA DICER-LIKE 1 (OsDCL) and ORYZA SATIVA WEAVY LEAF1 (OsWAF1)
EP3|LP	Os02g0260200	LOC_Os02g15950	crown root	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	We have identified the putative orthologue genes of the rice microRNA pathway for ORYZA SATIVA DAWDLE (OsDDL) and ORYZA SATIVA SERRATE (OsSE), and demonstrated that EP3 and OsFBK1 affect their transcript levels as well as those of CROWN ROOT DEFECT 1/ORYZA SATIVA Exportin-5 HASTY (CRD1/OsHST), ORYZA SATIVA DICER-LIKE 1 (OsDCL) and ORYZA SATIVA WEAVY LEAF1 (OsWAF1)
EP3|LP	Os02g0260200	LOC_Os02g15950	plant architecture	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
EP3|LP	Os02g0260200	LOC_Os02g15950	plant architecture	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
EP3|LP	Os02g0260200	LOC_Os02g15950	organ size	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
EP3|LP	Os02g0260200	LOC_Os02g15950	floral organ number	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
EPAD1	Os03g0663900	LOC_Os03g46110	pollen	Grass-Specific EPAD1 Is Essential for Pollen Exine Patterning in Rice	Grass-Specific EPAD1 Is Essential for Pollen Exine Patterning in Rice
EPAD1	Os03g0663900	LOC_Os03g46110	reproductive	Grass-Specific EPAD1 Is Essential for Pollen Exine Patterning in Rice	EPAD1 is specifically expressed in male meiocytes, indicating that reproductive cells exert genetic control over exine patterning
EPAD1	Os03g0663900	LOC_Os03g46110	plasma membrane	Grass-Specific EPAD1 Is Essential for Pollen Exine Patterning in Rice	EPAD1 possesses an N-terminal signal peptide and three redundant glycosylphosphatidylinositol (GPI)-anchor sites at its C-terminus, segments required for its function and localization to the microspore plasma membrane
EPAD1	Os03g0663900	LOC_Os03g46110	plasma membrane	Grass-Specific EPAD1 Is Essential for Pollen Exine Patterning in Rice	We propose that plasma membrane lipids bound by EPAD1 may be involved in recruiting and arranging regulatory proteins in the primexine to drive correct exine deposition
EPAD1	Os03g0663900	LOC_Os03g46110	microspore	Grass-Specific EPAD1 Is Essential for Pollen Exine Patterning in Rice	EPAD1 possesses an N-terminal signal peptide and three redundant glycosylphosphatidylinositol (GPI)-anchor sites at its C-terminus, segments required for its function and localization to the microspore plasma membrane
EPAD1	Os03g0663900	LOC_Os03g46110	male sterility	Grass-Specific EPAD1 Is Essential for Pollen Exine Patterning in Rice	Disruption of EPAD1 leads to abnormal exine pattern and complete male sterility, although sporopollenin biosynthesis is unaffected
EPFL10	None	LOC_Os08g41360	yield	Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance.	 Moderate reductions in stomatal density achieved by editing EPFL10 present a climate-adaptive approach for safeguarding yield in rice
EPFL10	None	LOC_Os08g41360	stomatal	Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance.	 epfl10 lines with moderate reductions in stomatal density were able to conserve water to similar extents as stomagen lines but did not suffer from the concomitant reductions in stomatal conductance, carbon assimilation, or thermoregulation observed in stomagen knockouts
EPFL10	None	LOC_Os08g41360	stomatal	Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance.	 Moderate reductions in stomatal density achieved by editing EPFL10 present a climate-adaptive approach for safeguarding yield in rice
EPFL10	None	LOC_Os08g41360	stomatal density	Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance.	 epfl10 lines with moderate reductions in stomatal density were able to conserve water to similar extents as stomagen lines but did not suffer from the concomitant reductions in stomatal conductance, carbon assimilation, or thermoregulation observed in stomagen knockouts
EPFL10	None	LOC_Os08g41360	stomatal density	Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance.	 Moderate reductions in stomatal density achieved by editing EPFL10 present a climate-adaptive approach for safeguarding yield in rice
EPSPs|OsEPSPS	Os06g0133900	LOC_Os06g04280	development	CRISPR/Cas9-mediated homology donor repair base editing confers glyphosate resistance to rice (Oryza sativa L.).	 Here, we describe the development of glyphosate-resistant rice lines by site-specific amino acid substitutions (G172A, T173I, and P177S: GATIPS-mOsEPSPS) and modification of phosphoenolpyruvate-binding site in the native OsEPSPS gene employing fragment knockout and knock-in of homology donor repair (HDR) template harboring desired mutations through CRISPR-Cas9-based genome editing
EPSPs|OsEPSPS	Os06g0133900	LOC_Os06g04280	grain	CRISPR/Cas9-mediated homology donor repair base editing confers glyphosate resistance to rice (Oryza sativa L.).	 Together, results highlighted that the efficacy of GATIPS mutations in OsEPSPS has tremendously contributed in glyphosate resistance (foliar spray of 6 ml/L), enhanced aromatic amino acids, and improved grain yields in rice
EPSPs|OsEPSPS	Os06g0133900	LOC_Os06g04280	resistance	CRISPR/Cas9-mediated homology donor repair base editing confers glyphosate resistance to rice (Oryza sativa L.).	 Together, results highlighted that the efficacy of GATIPS mutations in OsEPSPS has tremendously contributed in glyphosate resistance (foliar spray of 6 ml/L), enhanced aromatic amino acids, and improved grain yields in rice
EPSPs|OsEPSPS	Os06g0133900	LOC_Os06g04280	grain yield	CRISPR/Cas9-mediated homology donor repair base editing confers glyphosate resistance to rice (Oryza sativa L.).	 Together, results highlighted that the efficacy of GATIPS mutations in OsEPSPS has tremendously contributed in glyphosate resistance (foliar spray of 6 ml/L), enhanced aromatic amino acids, and improved grain yields in rice
ERS2	Os05g0155200	LOC_Os05g06320	iaa	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	However, the abundance of OS-ERS2 mRNA was shown to be down-regulated by both IAA and ethylene treatments, indicating that it was not positively regulated by ethylene
ERS2	Os05g0155200	LOC_Os05g06320	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Five ethylene receptor genes, OS-ERS1, OS-ERS2, OS-ETR2, OS-ETR3, and OS-ETR4 were isolated and characterized from rice
ERS2	Os05g0155200	LOC_Os05g06320	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Deduced amino acid sequences of OS-ERS1, OS-ERS2, OS-ETR2, OS-ETR3, and OS-ETR4 showed that they exhibited significant homology to the prokaryotic two-component signal transducer and a wide range of ethylene receptors in a variety of plant species
ERS2	Os05g0155200	LOC_Os05g06320	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	However, the abundance of OS-ERS2 mRNA was shown to be down-regulated by both IAA and ethylene treatments, indicating that it was not positively regulated by ethylene
ERS2	Os05g0155200	LOC_Os05g06320	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Analysis of the expression of the three ethylene receptor genes in different tissues of rice has unravelled their corresponding tissue-specificity in which OS-ERS1 was constitutively expressed in considerable amounts in all tissues studied, while OS-ERS2 and OS-ETR2 exhibited differential expression patterns in different tissues of rice
ES1|TUT1|OsSCAR1	Os01g0208600	LOC_Os01g11040	leaf	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice.	Expression of ES1 is higher in the leaves and leaf sheaths than in other tissues, consistent with its role in controlling water loss from leaves
ES1|TUT1|OsSCAR1	Os01g0208600	LOC_Os01g11040	early leaf senescence	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice
ES1|TUT1|OsSCAR1	Os01g0208600	LOC_Os01g11040	leaf senescence	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice
ES1|TUT1|OsSCAR1	Os01g0208600	LOC_Os01g11040	senescence	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice
ES1|TUT1|OsSCAR1	Os01g0208600	LOC_Os01g11040	water loss	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice
ES1|TUT1|OsSCAR1	Os01g0208600	LOC_Os01g11040	pollen	Rice TUTOU1 Encodes a SCAR-like Protein that Is Important for Actin Organization and Panicle Development.	The tut1 also shows a pleiotropic phenotype, characterized by short roots, reduced plant height, and abnormal development of anthers and pollen grains
ES1|TUT1|OsSCAR1	Os01g0208600	LOC_Os01g11040	panicle	Rice TUTOU1 Encodes a SCAR-like Protein that Is Important for Actin Organization and Panicle Development.	These results indicate that TUT1 is a functional SCAR/WAVE protein and plays an important role in panicle development
ES1|TUT1|OsSCAR1	Os01g0208600	LOC_Os01g11040	development	Rice TUTOU1 Encodes a SCAR-like Protein that Is Important for Actin Organization and Panicle Development.	The tut1 also shows a pleiotropic phenotype, characterized by short roots, reduced plant height, and abnormal development of anthers and pollen grains
ES1|TUT1|OsSCAR1	Os01g0208600	LOC_Os01g11040	development	Rice TUTOU1 Encodes a SCAR-like Protein that Is Important for Actin Organization and Panicle Development.	These results indicate that TUT1 is a functional SCAR/WAVE protein and plays an important role in panicle development
ESA1	Os01g0524100	LOC_Os01g34010	mitosis	ESA1 is involved in embryo sac abortion in interspecific hybrid progeny of rice.	rufipogon-derived ESA1 and Teqing-derived esa1 affects female gamete abortion during early mitosis
ESP	Os01g0356951	None	panicle	Epigenetic modification of ESP, encoding a putative long noncoding RNA, affects panicle architecture in rice.	Thus, our work identified a unique rice epiallele and demonstrated that epigenetic modification of ESP is associated with the regulation of panicle architecture in rice
ESP	Os01g0356951	None	architecture	Epigenetic modification of ESP, encoding a putative long noncoding RNA, affects panicle architecture in rice.	Thus, our work identified a unique rice epiallele and demonstrated that epigenetic modification of ESP is associated with the regulation of panicle architecture in rice
ESP	Os01g0356951	None	panicle architecture	Epigenetic modification of ESP, encoding a putative long noncoding RNA, affects panicle architecture in rice.	Thus, our work identified a unique rice epiallele and demonstrated that epigenetic modification of ESP is associated with the regulation of panicle architecture in rice
ESP1	Os07g0587400	LOC_Os07g39870	seed development	Eukaryotic peptide chain release factor 1 participates in translation termination of specific cysteine-poor prolamines in rice endosperm.	Our results provide convincing evidence that ESP1/eRF1 participates in the translation termination of CysP prolamines during seed development.
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	panicle	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	The effective panicles and seed-setting rate were reduced in the ETR2-overexpressing plants, while thousand-seed weight was substantially enhanced in both the ETR2-RNAi plants and the etr2 mutant compared with controls
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	Here, we characterized a subfamily II ethylene receptor, ETHYLENE RESPONSE2 (ETR2), in rice (Oryza sativa)
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	Overexpression of ETR2 in transgenic rice plants reduced ethylene sensitivity and delayed floral transition
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	Conversely, RNA interference (RNAi) plants exhibited early flowering and the ETR2 T-DNA insertion mutant etr2 showed enhanced ethylene sensitivity and early flowering
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	gibberellin	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	flower	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	Conversely, RNA interference (RNAi) plants exhibited early flowering and the ETR2 T-DNA insertion mutant etr2 showed enhanced ethylene sensitivity and early flowering
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	flower	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	The GIGANTEA and TERMINAL FLOWER1/CENTRORADIALIS homolog (RCN1) that cause delayed flowering were upregulated in ETR2-overexpressing plants but downregulated in the etr2 mutant
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	flower	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	Thus, ETR2 may delay flowering and cause starch accumulation in stems by regulating downstream genes
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice	Furthermore, the expression of two genes for ethylene signal transduction, ETR2 and EIN3, increased in these RNAi transgenic plants, whereas the expression of ERF3 was suppressed
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments	A cDNA from deep water rice treated with ethylene, encoding an ethylene receptor homologous to Arabidopsis thaliana ETR2 and EIN4, was isolated using differential display and RACE techniques
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	stem	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	Thus, ETR2 may delay flowering and cause starch accumulation in stems by regulating downstream genes
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	submergence	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	seed	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	The effective panicles and seed-setting rate were reduced in the ETR2-overexpressing plants, while thousand-seed weight was substantially enhanced in both the ETR2-RNAi plants and the etr2 mutant compared with controls
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments	The cDNA (2880 bp), corresponding to the Os-ERL1 gene (Oryza sativa ETHYLENE RESPONSE 2 like 1; GenBank accession number AB107219), contained an open reading frame of 2289 bp coding for 763 amino acids
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments	The Os-ERL1 gene was up-regulated by flooding, and by treatment with ethylene and gibberellin
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	starch	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	Starch granules accumulated in the internodes of the ETR2-overexpressing plants, but not in the etr2 mutant
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	starch	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	Thus, ETR2 may delay flowering and cause starch accumulation in stems by regulating downstream genes
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	starch	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	floral	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	Overexpression of ETR2 in transgenic rice plants reduced ethylene sensitivity and delayed floral transition
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	floral	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	gibberellin	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments	The Os-ERL1 gene was up-regulated by flooding, and by treatment with ethylene and gibberellin
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	seedlings	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	Furthermore, instead of the constitutive expression profile of OsERS1, OsETR2 is differentially expressed in seedlings of light/dark-grown conditions, submergence or exogenous ethylene treatments
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	submergence	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	Furthermore, instead of the constitutive expression profile of OsERS1, OsETR2 is differentially expressed in seedlings of light/dark-grown conditions, submergence or exogenous ethylene treatments
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	submergence	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	Our results and others support the notion that OsERS1 and OsETR2 could have different roles during rice plant submergence
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	OsERS1 and OsETR2 are major ethylene receptors in rice that have been reported to have different regulatory functions
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	ethylene	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	Furthermore, instead of the constitutive expression profile of OsERS1, OsETR2 is differentially expressed in seedlings of light/dark-grown conditions, submergence or exogenous ethylene treatments
ETR2|Os-ERL1|OsETR2	Os04g0169100	LOC_Os04g08740	plasma membrane	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	Base on the results, we suggested that OsERS1 could be localized to plasma membranes, whereas OsETR2 could be localized to the endoplasmic reticulum
ETR3	Os02g0820900	LOC_Os02g57530	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Five ethylene receptor genes, OS-ERS1, OS-ERS2, OS-ETR2, OS-ETR3, and OS-ETR4 were isolated and characterized from rice
ETR3	Os02g0820900	LOC_Os02g57530	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Deduced amino acid sequences of OS-ERS1, OS-ERS2, OS-ETR2, OS-ETR3, and OS-ETR4 showed that they exhibited significant homology to the prokaryotic two-component signal transducer and a wide range of ethylene receptors in a variety of plant species
ETR3	Os02g0820900	LOC_Os02g57530	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Among the five ethylene receptor genes, the expression levels of both OS-ETR3 and OS-ETR4 were too low to be detected by the northern blot analysis
ETR4	Os07g0259100	LOC_Os07g15540	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Five ethylene receptor genes, OS-ERS1, OS-ERS2, OS-ETR2, OS-ETR3, and OS-ETR4 were isolated and characterized from rice
ETR4	Os07g0259100	LOC_Os07g15540	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Deduced amino acid sequences of OS-ERS1, OS-ERS2, OS-ETR2, OS-ETR3, and OS-ETR4 showed that they exhibited significant homology to the prokaryotic two-component signal transducer and a wide range of ethylene receptors in a variety of plant species
ETR4	Os07g0259100	LOC_Os07g15540	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Among the five ethylene receptor genes, the expression levels of both OS-ETR3 and OS-ETR4 were too low to be detected by the northern blot analysis
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	growth	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	It was found that the level of active gibberellin was elevated in the mutant, whereas its growth in response to gibberellin is similar to that of the wild type, suggesting that the higher level accumulation of gibberellin in the eui1 mutant causes the abnormal elongation of the uppermost internode
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	gibberellin	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	It was found that the level of active gibberellin was elevated in the mutant, whereas its growth in response to gibberellin is similar to that of the wild type, suggesting that the higher level accumulation of gibberellin in the eui1 mutant causes the abnormal elongation of the uppermost internode
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	gibberellin	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	Overexpression of EUI1 gave rise to the gibberellin-deficient-like phenotypes, which could be partially reversed by supplementation with gibberellin
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	gibberellin	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	Furthermore, apart from the alteration of expression levels of the gibberellin biosynthesis genes, accumulation of SLR1 protein was found in the overexpressing transgenic plants, indicating that the expression level of EUI1 is implicated in both gibberellin-mediated SLR1 destruction and a feedback regulation in gibberellin biosynthesis
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	gibberellin	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	Therefore, we proposed that EUI1 plays a negative role in gibberellin-mediated regulation of cell elongation in the uppermost internode of rice
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	gibberellin	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	cell elongation	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	Therefore, we proposed that EUI1 plays a negative role in gibberellin-mediated regulation of cell elongation in the uppermost internode of rice
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	breeding	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	Here, we report a detailed characterization of an elongated uppermost internode1 (eui1) mutant, which has been used in hybrid rice breeding
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	panicle	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	We cloned the EUI1 gene, which encodes a putative cytochrome P450 monooxygenase, by map-based cloning and found that EUI1 was weakly expressed in most tissues, but preferentially in young panicles
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	homeostasis	The Intronic cis-Element SE1 Recruits trans-acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.	 The expression of Eui1 is finely tuned, thereby maintaining homeostasis of endogenous bioactive GA and producing plants of normal plant height
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	homeostasis	The Intronic cis-Element SE1 Recruits trans-acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.	 This complex generates closed chromatin at Eui1, suppressing Eui1 expression and modulating GA homeostasis
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	 ga 	The Intronic cis-Element SE1 Recruits trans-acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.	 The expression of Eui1 is finely tuned, thereby maintaining homeostasis of endogenous bioactive GA and producing plants of normal plant height
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	 ga 	The Intronic cis-Element SE1 Recruits trans-acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.	 This complex generates closed chromatin at Eui1, suppressing Eui1 expression and modulating GA homeostasis
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	dwarf	The Intronic cis-Element SE1 Recruits trans-acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.	 Here, we identified a dominant dwarf mutant, dEui1, caused by the deletion of an RY motif-containing cis silencing element (SE1) in the intron of Eui1
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	height	The Intronic cis-Element SE1 Recruits trans-acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.	 The expression of Eui1 is finely tuned, thereby maintaining homeostasis of endogenous bioactive GA and producing plants of normal plant height
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	plant height	The Intronic cis-Element SE1 Recruits trans-acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.	 The expression of Eui1 is finely tuned, thereby maintaining homeostasis of endogenous bioactive GA and producing plants of normal plant height
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	GA	The Intronic cis-Element SE1 Recruits trans-acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.	 The expression of Eui1 is finely tuned, thereby maintaining homeostasis of endogenous bioactive GA and producing plants of normal plant height
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	GA	The Intronic cis-Element SE1 Recruits trans-acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.	 This complex generates closed chromatin at Eui1, suppressing Eui1 expression and modulating GA homeostasis
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	growth	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	growth	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Previously, we reported that expression of the rice cytochrome P450 monooxygenase gene OsCYP714D1 increased gibberellic acid (GA) accumulation and shoot growth in transgenic poplar
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	growth	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	shoot	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Previously, we reported that expression of the rice cytochrome P450 monooxygenase gene OsCYP714D1 increased gibberellic acid (GA) accumulation and shoot growth in transgenic poplar
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	shoot	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	resistance	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	salt	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	salt	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 In this work, we demonstrate that expression of OsCYP714D1 improved the salt tolerance of transgenic poplar plants
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	salt	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Transcriptomic analyses revealed that OsCYP714D1 expression up-regulated the expressions of GA biosynthesis, signaling and stress responsive genes in transgenic plants under both normal and high salt stress conditions
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	salt	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	tolerance	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	tolerance	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 In this work, we demonstrate that expression of OsCYP714D1 improved the salt tolerance of transgenic poplar plants
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	gibberellin	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	gibberellin	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	salt tolerance	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	salt tolerance	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 In this work, we demonstrate that expression of OsCYP714D1 improved the salt tolerance of transgenic poplar plants
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	salt stress	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Transcriptomic analyses revealed that OsCYP714D1 expression up-regulated the expressions of GA biosynthesis, signaling and stress responsive genes in transgenic plants under both normal and high salt stress conditions
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	salt stress	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	stress	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Transcriptomic analyses revealed that OsCYP714D1 expression up-regulated the expressions of GA biosynthesis, signaling and stress responsive genes in transgenic plants under both normal and high salt stress conditions
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	stress	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	homeostasis	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	homeostasis	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	plant growth	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	ga	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Transcriptomic analyses revealed that OsCYP714D1 expression up-regulated the expressions of GA biosynthesis, signaling and stress responsive genes in transgenic plants under both normal and high salt stress conditions
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	biomass	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	Gibberellin	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	Gibberellin	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	GA	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Transcriptomic analyses revealed that OsCYP714D1 expression up-regulated the expressions of GA biosynthesis, signaling and stress responsive genes in transgenic plants under both normal and high salt stress conditions
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	biomass production	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Our findings imply that OsCYP714D1 participated in the regulation of both shoot growth and salt resistance through regulating gibberellin and ion homeostasis in transgenic poplar, and it can be used as a candidate gene for the engineering of new tree varieties with improved biomass production and salt stress resistance
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	GA biosynthesis	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	 Transcriptomic analyses revealed that OsCYP714D1 expression up-regulated the expressions of GA biosynthesis, signaling and stress responsive genes in transgenic plants under both normal and high salt stress conditions
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	leaf	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Functional complementation and overexpression tests showed that LG5 can rescue the bigger grain size and larger flag leaf angle in the Xiushui11 (XS) background
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	leaf	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Knockdown of the LG5 transcription level by RNA interference resulted in elevated grain size and flag leaf angle in the Nipponbare (NIP) background
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	leaf	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Morphological and cellular analyses suggested that LG5 regulated grain size and flag leaf angle by promoting cell expansion and cell proliferation
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	grain	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Functional complementation and overexpression tests showed that LG5 can rescue the bigger grain size and larger flag leaf angle in the Xiushui11 (XS) background
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	grain	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Knockdown of the LG5 transcription level by RNA interference resulted in elevated grain size and flag leaf angle in the Nipponbare (NIP) background
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	grain	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Morphological and cellular analyses suggested that LG5 regulated grain size and flag leaf angle by promoting cell expansion and cell proliferation
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	grain size	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Functional complementation and overexpression tests showed that LG5 can rescue the bigger grain size and larger flag leaf angle in the Xiushui11 (XS) background
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	grain size	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Knockdown of the LG5 transcription level by RNA interference resulted in elevated grain size and flag leaf angle in the Nipponbare (NIP) background
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	grain size	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Morphological and cellular analyses suggested that LG5 regulated grain size and flag leaf angle by promoting cell expansion and cell proliferation
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	cell proliferation	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Morphological and cellular analyses suggested that LG5 regulated grain size and flag leaf angle by promoting cell expansion and cell proliferation
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	leaf angle	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Functional complementation and overexpression tests showed that LG5 can rescue the bigger grain size and larger flag leaf angle in the Xiushui11 (XS) background
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	leaf angle	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Knockdown of the LG5 transcription level by RNA interference resulted in elevated grain size and flag leaf angle in the Nipponbare (NIP) background
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	leaf angle	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Morphological and cellular analyses suggested that LG5 regulated grain size and flag leaf angle by promoting cell expansion and cell proliferation
EUI1|OsCYP714D1|LG5	Os05g0482400	LOC_Os05g40384	cell expansion	LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice.	 Morphological and cellular analyses suggested that LG5 regulated grain size and flag leaf angle by promoting cell expansion and cell proliferation
EXPLA1	Os03g0132200	LOC_Os03g04020	seed	GW2 Functions as an E3 Ubiquitin Ligase for Rice Expansin-Like 1.	These results suggest that GW2 negatively regulates seed size by targeting EXPLA1 for degradation through its E3 ubiquitin ligase activity
EXPLA1	Os03g0132200	LOC_Os03g04020	nucleus	GW2 Functions as an E3 Ubiquitin Ligase for Rice Expansin-Like 1.	GW2 and EXPLA1 colocalized to the nucleus when expressed simultaneously
EXPLA1	Os03g0132200	LOC_Os03g04020	seed size	GW2 Functions as an E3 Ubiquitin Ligase for Rice Expansin-Like 1.	These results suggest that GW2 negatively regulates seed size by targeting EXPLA1 for degradation through its E3 ubiquitin ligase activity
EXPLA1	Os03g0132200	LOC_Os03g04020	Ubiquitin	GW2 Functions as an E3 Ubiquitin Ligase for Rice Expansin-Like 1.	These results suggest that GW2 negatively regulates seed size by targeting EXPLA1 for degradation through its E3 ubiquitin ligase activity
FBL55|OsAFB3	Os11g0515500	LOC_Os11g31620	auxin	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Auxin metabolism- and signaling pathway-related genes were differentially expressed in the siR109944 OE and FBL55 OE plants
FBL55|OsAFB3	Os11g0515500	LOC_Os11g31620	resistance	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	We found that rice had significantly enhanced susceptibility when siR109944 was overexpressed, while FBL55 OE plants showed resistance to R
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	tiller	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We found that the increased tillering phenotype of fine culm1 (fc1) mutants of rice is not rescued by the application of 1 microM GR24, a synthetic SL analog
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	tiller	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Treatment with a high concentration of GR24 (10 microM) causes suppression of tiller growth in wild-type plants, but is not effective on fc1 mutants, implying that proper FC1 functioning is required for SLs to inhibit bud growth
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	tiller	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Overexpression of FC1 partially rescued d3-2 defects in the tiller growth and plant height
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	shoot	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	shoot	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We propose that FC1 acts as an integrator of multiple signaling pathways and is essential to the fine-tuning of shoot branching in rice
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	crown root	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	culm	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice	To understand the molecular mechanisms that control culm mechanical strength, we identified a flexible culm1 (fc1) mutant by screening a rice T-DNA insertion mutant library
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	culm	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice	In this study, we cloned the FLEXIBLE CULM1 (FC1) gene in rice using a T-DNA tagging approach
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	culm	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice	Our results indicated that FC1 plays an important role in the biosynthesis of lignin and the control of culm strength in rice
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	height	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Overexpression of FC1 partially rescued d3-2 defects in the tiller growth and plant height
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	cytokinin	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	On the other hand, the expression level of FC1 is negatively regulated by cytokinin treatment
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	branching	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We propose that FC1 acts as an integrator of multiple signaling pathways and is essential to the fine-tuning of shoot branching in rice
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	strigolactone	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	cell wall	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice	FC1 encodes a cinnamyl-alcohol dehydrogenase and is mainly expressed in the sclerenchyma cells of the secondary cell wall and vascular bundle region
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	cell wall	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice	In these types of cells, a deficiency of FC1 in the fc1 mutant caused a reduction in cell wall thickness, as well as a decrease in lignin
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	cell wall	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice	Further histological and biochemical analyses revealed that the p-hydroxyphenyl and guaiacyl monomers in fc1 cell wall were reduced greatly
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	panicle	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice	Extracts from the first internodes and panicles of the fc1 plants exhibited drastically reduced cinnamyl-alcohol dehydrogenase activity
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	meristem	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	shoot apical meristem	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	culm	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We found that the increased tillering phenotype of fine culm1 (fc1) mutants of rice is not rescued by the application of 1 microM GR24, a synthetic SL analog
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	culm	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	vascular bundle	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice	FC1 encodes a cinnamyl-alcohol dehydrogenase and is mainly expressed in the sclerenchyma cells of the secondary cell wall and vascular bundle region
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	growth	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Treatment with a high concentration of GR24 (10 microM) causes suppression of tiller growth in wild-type plants, but is not effective on fc1 mutants, implying that proper FC1 functioning is required for SLs to inhibit bud growth
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	growth	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Overexpression of FC1 partially rescued d3-2 defects in the tiller growth and plant height
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	growth	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	tillering	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We found that the increased tillering phenotype of fine culm1 (fc1) mutants of rice is not rescued by the application of 1 microM GR24, a synthetic SL analog
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	crown	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
FC1|OsCAD7	Os04g0612700	LOC_Os04g52280	root	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	floral	OsFY, a Homolog of AtFY, Encodes a Protein that Can Interact with OsFCA-γ in Rice (Oryza sativa L.)	The FCA/FY interaction is also required for the regulation of FLC expression, a major floral repressor in Arabidopsis
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	stamen	Alternative splicing and expression analysis of OsFCA (FCA in Oryza sativa L.), a gene homologous to FCA in Arabidopsis	The expression of OsFCA-1 is steady in the leaves of three different stage, but up-regulated in young spikelet of primary branch-differentiating stage and down-regulated in young spikelet of pistil and stamen-differentiating stage
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	heading date	Conservation and divergence of FCA function between Arabidopsis and rice	In order to acquire further insight into the control of heading dates in rice, we isolated and conducted an expression analysis on OsFCA, which exhibited 38% sequence homology with Arabidopsis FCA
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	spikelet	Alternative splicing and expression analysis of OsFCA (FCA in Oryza sativa L.), a gene homologous to FCA in Arabidopsis	The expression of OsFCA-1 is steady in the leaves of three different stage, but up-regulated in young spikelet of primary branch-differentiating stage and down-regulated in young spikelet of pistil and stamen-differentiating stage
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	floral	Overexpression of the rFCA RNA recognition motif affects morphologies modifications in rice (Oryza sativa L.)	The FCA floral promotion gene in Arabidopsis encodes a protein, containing two RNA recognition motifs (RRM) and a WW protein interaction domain
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flowering time	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flower	OsFY, a Homolog of AtFY, Encodes a Protein that Can Interact with OsFCA-γ in Rice (Oryza sativa L.)	Recently, alternative RNA processing of OsFCA was observed in rice, which strongly suggested the existence of an autonomous flowering pathway in rice
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	root	Conservation and divergence of FCA function between Arabidopsis and rice	The beta and gamma transcripts of the OsFCA gene were detected via Northern analysis in the leaves, roots, and flowers of the plant
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flower	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY	The FCA protein is involved in controlling flowering time and plays more general roles in RNA-mediated chromatin silencing in Arabidopsis
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flower	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flowering time	OsFY, a Homolog of AtFY, Encodes a Protein that Can Interact with OsFCA-γ in Rice (Oryza sativa L.)	FCA and FY are flowering time related genes involved in the autonomous flowering pathway in Arabidopsis
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flower	Conservation and divergence of FCA function between Arabidopsis and rice	The beta and gamma transcripts of the OsFCA gene were detected via Northern analysis in the leaves, roots, and flowers of the plant
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flower	Conservation and divergence of FCA function between Arabidopsis and rice	The overexpression of OsFCA cDNA, driven by the 35S promoter, was shown to partially rescue the late flowering phenotype of the fca mutant, suggesting that the functions of the OsFCA and the FCA are partially overlapped, despite the lack of an apparent FLC homologue in the rice genome
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flower	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flowering time	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY	The FCA protein is involved in controlling flowering time and plays more general roles in RNA-mediated chromatin silencing in Arabidopsis
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flowering time	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flower	OsFY, a Homolog of AtFY, Encodes a Protein that Can Interact with OsFCA-γ in Rice (Oryza sativa L.)	FCA and FY are flowering time related genes involved in the autonomous flowering pathway in Arabidopsis
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flower	OsFY, a Homolog of AtFY, Encodes a Protein that Can Interact with OsFCA-γ in Rice (Oryza sativa L.)	Recently, alternative RNA processing of OsFCA was observed in rice, which strongly suggested the existence of an autonomous flowering pathway in rice
FCA|OsFCA	Os09g0123200	LOC_Os09g03610	flower	OsFY, a Homolog of AtFY, Encodes a Protein that Can Interact with OsFCA-γ in Rice (Oryza sativa L.)	These results indicate that the autonomous flowering pathway is present in monocots, and the regulation through FY and FCA interaction is conserved between monocots and dicots
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	shoot apical meristem	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	Consistent with similarities in the shoot apical meristem phenotypes caused by overexpression of FCP1 and downregulation of WOX4, expression of WOX4 was negatively regulated by FCP1 (FCP2)
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	root development	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Constitutive expression of FCP1 results in consumption of the SAM in the vegetative phase, and application of an FCP1 CLE peptide in vitro disturbs root development by misspecification of cell fates in the RAM
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	floral	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Here, we report that two proteins closely related to CLAVATA3, FLORAL ORGAN NUMBER2 (FON2) and FON2-LIKE CLE PROTEIN1 (FCP1/Os CLE402), have functionally diversified to regulate the different types of meristem in rice (Oryza sativa)
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	inflorescence	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Unlike FON2, which regulates the maintenance of flower and inflorescence meristems, FCP1 appears to regulate the maintenance of the vegetative SAM and RAM
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	shoot	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	Consistent with similarities in the shoot apical meristem phenotypes caused by overexpression of FCP1 and downregulation of WOX4, expression of WOX4 was negatively regulated by FCP1 (FCP2)
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	root	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Constitutive expression of FCP1 results in consumption of the SAM in the vegetative phase, and application of an FCP1 CLE peptide in vitro disturbs root development by misspecification of cell fates in the RAM
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	meristem	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	In this article, we demonstrate that the FON2-LIKE CLE PROTEIN1 (FCP1) and FCP2 genes encoding proteins with similar CLE domains are involved in negative regulation of meristem maintenance in the vegetative phase
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	meristem	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	Consistent with similarities in the shoot apical meristem phenotypes caused by overexpression of FCP1 and downregulation of WOX4, expression of WOX4 was negatively regulated by FCP1 (FCP2)
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	meristem	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	Thus, FCP1/2 and WOX4 are likely to be involved in maintenance of the vegetative meristem in rice
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	meristem	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	vegetative	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	In this article, we demonstrate that the FON2-LIKE CLE PROTEIN1 (FCP1) and FCP2 genes encoding proteins with similar CLE domains are involved in negative regulation of meristem maintenance in the vegetative phase
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	vegetative	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	Thus, FCP1/2 and WOX4 are likely to be involved in maintenance of the vegetative meristem in rice
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	meristem	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Here, we report that two proteins closely related to CLAVATA3, FLORAL ORGAN NUMBER2 (FON2) and FON2-LIKE CLE PROTEIN1 (FCP1/Os CLE402), have functionally diversified to regulate the different types of meristem in rice (Oryza sativa)
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	meristem	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Unlike FON2, which regulates the maintenance of flower and inflorescence meristems, FCP1 appears to regulate the maintenance of the vegetative SAM and RAM
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	flower	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Unlike FON2, which regulates the maintenance of flower and inflorescence meristems, FCP1 appears to regulate the maintenance of the vegetative SAM and RAM
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	floral organ number	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Here, we report that two proteins closely related to CLAVATA3, FLORAL ORGAN NUMBER2 (FON2) and FON2-LIKE CLE PROTEIN1 (FCP1/Os CLE402), have functionally diversified to regulate the different types of meristem in rice (Oryza sativa)
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	vegetative	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Unlike FON2, which regulates the maintenance of flower and inflorescence meristems, FCP1 appears to regulate the maintenance of the vegetative SAM and RAM
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	vegetative	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Constitutive expression of FCP1 results in consumption of the SAM in the vegetative phase, and application of an FCP1 CLE peptide in vitro disturbs root development by misspecification of cell fates in the RAM
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	leaf	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	Here, we examined the role of FCP1 in leaf development
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	leaf	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	We found that overexpression of FCP1 affects various aspects of leaf development in shoots regenerated from calli, making it difficult to distinguish between the leaf blade and leaf sheath
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	leaf	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	Taken together, our results suggest that FCP1 is involved in the regulation of cell fate determination during leaf development
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	vascular bundle	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	Differentiation of tissues such as vascular bundle and sclerenchyma was strongly inhibited by FCP1 overexpression
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	leaf development	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	Here, we examined the role of FCP1 in leaf development
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	leaf development	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	We found that overexpression of FCP1 affects various aspects of leaf development in shoots regenerated from calli, making it difficult to distinguish between the leaf blade and leaf sheath
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	leaf development	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	Taken together, our results suggest that FCP1 is involved in the regulation of cell fate determination during leaf development
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	sheath	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	We found that overexpression of FCP1 affects various aspects of leaf development in shoots regenerated from calli, making it difficult to distinguish between the leaf blade and leaf sheath
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	development	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	Here, we examined the role of FCP1 in leaf development
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	development	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	We found that overexpression of FCP1 affects various aspects of leaf development in shoots regenerated from calli, making it difficult to distinguish between the leaf blade and leaf sheath
FCP1|OsCLE402	Os04g0473800	LOC_Os04g39770	development	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.	Taken together, our results suggest that FCP1 is involved in the regulation of cell fate determination during leaf development
FCP2	Os06g0532500	LOC_Os06g34180	root	A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice	Here it is shown that exogenous application of a synthetic dodeca-amino acid peptide corresponding to the CLE motif of the rice FON2-LIKE CLE PROTEIN2 (FCP2p) protein or overexpression of FCP2 terminates root apical meristem (RAM) activity and impairs late metaxylem formation
FCP2	Os06g0532500	LOC_Os06g34180	root	A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice	Moreover, a cross-species peptide treatment experiment in Arabidopsis implies that FCP2 has both evolutionarily conserved and species-specific roles in root development
FCP2	Os06g0532500	LOC_Os06g34180	vegetative	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	In this article, we demonstrate that the FON2-LIKE CLE PROTEIN1 (FCP1) and FCP2 genes encoding proteins with similar CLE domains are involved in negative regulation of meristem maintenance in the vegetative phase
FCP2	Os06g0532500	LOC_Os06g34180	root development	A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice	Moreover, a cross-species peptide treatment experiment in Arabidopsis implies that FCP2 has both evolutionarily conserved and species-specific roles in root development
FCP2	Os06g0532500	LOC_Os06g34180	shoot	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	Consistent with similarities in the shoot apical meristem phenotypes caused by overexpression of FCP1 and downregulation of WOX4, expression of WOX4 was negatively regulated by FCP1 (FCP2)
FCP2	Os06g0532500	LOC_Os06g34180	root apical meristem	A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice	Here it is shown that exogenous application of a synthetic dodeca-amino acid peptide corresponding to the CLE motif of the rice FON2-LIKE CLE PROTEIN2 (FCP2p) protein or overexpression of FCP2 terminates root apical meristem (RAM) activity and impairs late metaxylem formation
FCP2	Os06g0532500	LOC_Os06g34180	meristem	A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice	Here it is shown that exogenous application of a synthetic dodeca-amino acid peptide corresponding to the CLE motif of the rice FON2-LIKE CLE PROTEIN2 (FCP2p) protein or overexpression of FCP2 terminates root apical meristem (RAM) activity and impairs late metaxylem formation
FCP2	Os06g0532500	LOC_Os06g34180	meristem	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	In this article, we demonstrate that the FON2-LIKE CLE PROTEIN1 (FCP1) and FCP2 genes encoding proteins with similar CLE domains are involved in negative regulation of meristem maintenance in the vegetative phase
FCP2	Os06g0532500	LOC_Os06g34180	meristem	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	Consistent with similarities in the shoot apical meristem phenotypes caused by overexpression of FCP1 and downregulation of WOX4, expression of WOX4 was negatively regulated by FCP1 (FCP2)
FCP2	Os06g0532500	LOC_Os06g34180	shoot apical meristem	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice	Consistent with similarities in the shoot apical meristem phenotypes caused by overexpression of FCP1 and downregulation of WOX4, expression of WOX4 was negatively regulated by FCP1 (FCP2)
Fd	Os05g0443500	LOC_Os05g37140	root	Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium	The root Fd cDNA clone (pFDRR) was 603 bp long which contained 261-bp 5' region encoding the C-terminal 72 amino acid residues and 342-bp 3' noncoding region
Fd	Os05g0443500	LOC_Os05g37140	root	Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium	The root Fd gene contained 1091-bp 5' upstream, 444-bp coding and 294-bp 3' noncoding regions
Fd	Os05g0443500	LOC_Os05g37140	root	Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium	Homology between the rice root and leaf Fds showed 60%, while the former protein shared much higher identity with other nonphotosynthetic Fds (66~88%)
Fd	Os05g0443500	LOC_Os05g37140	root	Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium	Expression of the root Fd gene was induced in response to nitrate and ammonium
Fd	Os05g0443500	LOC_Os05g37140	leaf	Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium	Homology between the rice root and leaf Fds showed 60%, while the former protein shared much higher identity with other nonphotosynthetic Fds (66~88%)
Fd	Os05g0443500	LOC_Os05g37140	leaf	Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium	Southern blot analysis using pFDRR and the rice leaf Fd cDNA (pFDRL) as a DNA probe identified their corresponding genomic Fd DNA
Fd	Os05g0443500	LOC_Os05g37140	nitrate	Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium	Expression of the root Fd gene was induced in response to nitrate and ammonium
Fd1	Os08g0104600	LOC_Os08g01380	nitrogen	Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis	Fd1 is more abundant than Fd2 in high nitrate, similar to LFNR2.
Fd1	Os08g0104600	LOC_Os08g01380	nitrogen	Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis	Fd2 mRNA is low under high-nitrate concentrations, although Fd1 is expressed at the same levels under any nitrogen conditions.
Fd1	Os08g0104600	LOC_Os08g01380	seedling	Primary Leaf-type Ferredoxin1 Participates in Photosynthetic Electron Transport and Carbon Assimilation in Rice.	Loss-of-function fd1 mutants showed chlorosis and seedling lethality at the three-leaf stage
Fd1	Os08g0104600	LOC_Os08g01380	photosystem	Primary Leaf-type Ferredoxin1 Participates in Photosynthetic Electron Transport and Carbon Assimilation in Rice.	Electron transfer assays involving NADP+ and cytochrome c indicated that Fd1 can donate electrons from photosystem I (PSI) to ferredoxin-NADP+ reductase
FDH	Os02g0815500	LOC_Os02g57040	homeostasis	Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray	To profile several genes simultaneously, a cDNA macroarray was developed using 36 metal-related genes from rice, including ZIPs, NRAMPs, and YSLs (coding for known or potential metal transporters), as well as NAS, FER, FRO, NAAT, FDH, GSTU, and PDR (involved in metal homeostasis)
FDH	Os02g0815500	LOC_Os02g57040	transporter	Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray	To profile several genes simultaneously, a cDNA macroarray was developed using 36 metal-related genes from rice, including ZIPs, NRAMPs, and YSLs (coding for known or potential metal transporters), as well as NAS, FER, FRO, NAAT, FDH, GSTU, and PDR (involved in metal homeostasis)
FGR1|OsNPPR1	Os08g0290000	LOC_Os08g19310	development	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.
FGR1|OsNPPR1	Os08g0290000	LOC_Os08g19310	development	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.	Thus, OsNPPR1 was involved in regulation of mitochondrial development and/or functions that are important for endosperm development
FGR1|OsNPPR1	Os08g0290000	LOC_Os08g19310	endosperm	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.
FGR1|OsNPPR1	Os08g0290000	LOC_Os08g19310	endosperm	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.	Thus, OsNPPR1 was involved in regulation of mitochondrial development and/or functions that are important for endosperm development
FGR1|OsNPPR1	Os08g0290000	LOC_Os08g19310	R protein	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.
FGR1|OsNPPR1	Os08g0290000	LOC_Os08g19310	R protein	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.	This gene encodes a nucleus-localized PPR protein we named it OsNPPR1 that affected mitochondrial function
FGR1|OsNPPR1	Os08g0290000	LOC_Os08g19310	endosperm development	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.
FGR1|OsNPPR1	Os08g0290000	LOC_Os08g19310	endosperm development	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.	Thus, OsNPPR1 was involved in regulation of mitochondrial development and/or functions that are important for endosperm development
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	chloroplast	RICE MORPHOLOGY DETERMINANT encodes the type II formin FH5 and regulates rice morphogenesis	FH5/RMD is ubiquitously expressed in rice tissues, and its protein localization to the chloroplast surface is mediated by the PTEN domain
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	panicle	RICE MORPHOLOGY DETERMINANT encodes the type II formin FH5 and regulates rice morphogenesis	The rmd mutants display a bending growth pattern in seedlings, are stunted as adult plants, and have aberrant inflorescence (panicle) and seed shape
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	growth	BENT UPPERMOST INTERNODE1 encodes the class II formin FH5 crucial for actin organization and rice development	Cytological observation indicated that the growth defects of bui1 were caused mainly by inhibition of cell expansion
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	seed	RICE MORPHOLOGY DETERMINANT encodes the type II formin FH5 and regulates rice morphogenesis	The rmd mutants display a bending growth pattern in seedlings, are stunted as adult plants, and have aberrant inflorescence (panicle) and seed shape
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	dwarf	BENT UPPERMOST INTERNODE1 encodes the class II formin FH5 crucial for actin organization and rice development	The bui1 mutant displayed pleiotropic phenotypes, including bent uppermost internode, dwarfism, wavy panicle rachis, and enhanced gravitropic response
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	seedling	RICE MORPHOLOGY DETERMINANT encodes the type II formin FH5 and regulates rice morphogenesis	The rmd mutants display a bending growth pattern in seedlings, are stunted as adult plants, and have aberrant inflorescence (panicle) and seed shape
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	growth	RICE MORPHOLOGY DETERMINANT encodes the type II formin FH5 and regulates rice morphogenesis	The rmd mutants display a bending growth pattern in seedlings, are stunted as adult plants, and have aberrant inflorescence (panicle) and seed shape
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	inflorescence	RICE MORPHOLOGY DETERMINANT encodes the type II formin FH5 and regulates rice morphogenesis	The rmd mutants display a bending growth pattern in seedlings, are stunted as adult plants, and have aberrant inflorescence (panicle) and seed shape
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	cell elongation	RICE MORPHOLOGY DETERMINANT encodes the type II formin FH5 and regulates rice morphogenesis	Cytological analysis showed that rmd mutants have severe cell elongation defects and abnormal microtubule and microfilament arrays
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	panicle	BENT UPPERMOST INTERNODE1 encodes the class II formin FH5 crucial for actin organization and rice development	The bui1 mutant displayed pleiotropic phenotypes, including bent uppermost internode, dwarfism, wavy panicle rachis, and enhanced gravitropic response
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	growth	Rice Morphology Determinant-mediated Actin Filament Organization Contributes to Pollen Tube Growth.	The rice rmd mutant exhibits abnormal pollen tube growth and a decreased germination rate of the pollen grain in vitro and in vivo
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	growth	Rice Morphology Determinant-mediated Actin Filament Organization Contributes to Pollen Tube Growth.	The rmd pollen tubes display a disorganized F-actin pattern with disrupted apical actin density and shank longitudinal cable direction/arrangement, indicating the novel role of RMD in F-actin polarity during tip growth
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	growth	Rice Morphology Determinant-mediated Actin Filament Organization Contributes to Pollen Tube Growth.	Consistent with this role, RMD localizes at the tip of the rice pollen tube, which is essential for pollen tube growth and polarity as well as F-actin organization
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	growth	Rice Morphology Determinant-mediated Actin Filament Organization Contributes to Pollen Tube Growth.	Collectively, our results suggest that RMD is essential for the spatial regulation in pollen tube growth via modulating F-actin organization and array orientation in rice
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	pollen	Rice Morphology Determinant-mediated Actin Filament Organization Contributes to Pollen Tube Growth.	The rice rmd mutant exhibits abnormal pollen tube growth and a decreased germination rate of the pollen grain in vitro and in vivo
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	pollen	Rice Morphology Determinant-mediated Actin Filament Organization Contributes to Pollen Tube Growth.	The rmd pollen tubes display a disorganized F-actin pattern with disrupted apical actin density and shank longitudinal cable direction/arrangement, indicating the novel role of RMD in F-actin polarity during tip growth
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	pollen	Rice Morphology Determinant-mediated Actin Filament Organization Contributes to Pollen Tube Growth.	Consistent with this role, RMD localizes at the tip of the rice pollen tube, which is essential for pollen tube growth and polarity as well as F-actin organization
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	pollen	Rice Morphology Determinant-mediated Actin Filament Organization Contributes to Pollen Tube Growth.	Collectively, our results suggest that RMD is essential for the spatial regulation in pollen tube growth via modulating F-actin organization and array orientation in rice
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	grain	Rice Morphology Determinant-mediated Actin Filament Organization Contributes to Pollen Tube Growth.	The rice rmd mutant exhibits abnormal pollen tube growth and a decreased germination rate of the pollen grain in vitro and in vivo
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	gravitropic response	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	RMD protein localizes to the surface of statoliths, and rmd mutants exhibit faster gravitropic response owing to more rapid statoliths movement
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	root	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	Rice actin binding protein RMD controls crown root angle in response to external phosphate.
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	root	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	RMD is upregulated in response to low external phosphate and mutants lacking of RMD have steeper crown root growth angles that are unresponsive to phosphate levels
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	root	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	We conclude that adaptive changes to root angle in response to external phosphate availability are RMD dependent, providing a potential target for breeders
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	growth	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	RMD is upregulated in response to low external phosphate and mutants lacking of RMD have steeper crown root growth angles that are unresponsive to phosphate levels
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	crown	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	Rice actin binding protein RMD controls crown root angle in response to external phosphate.
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	crown	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	RMD is upregulated in response to low external phosphate and mutants lacking of RMD have steeper crown root growth angles that are unresponsive to phosphate levels
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	crown root	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	Rice actin binding protein RMD controls crown root angle in response to external phosphate.
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	crown root	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	RMD is upregulated in response to low external phosphate and mutants lacking of RMD have steeper crown root growth angles that are unresponsive to phosphate levels
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	phosphate	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	RMD is upregulated in response to low external phosphate and mutants lacking of RMD have steeper crown root growth angles that are unresponsive to phosphate levels
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	phosphate	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	We conclude that adaptive changes to root angle in response to external phosphate availability are RMD dependent, providing a potential target for breeders
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	shoot gravitropism	The rice actin-binding protein RMD regulates light-dependent shoot gravitropism.	The rice actin-binding protein RMD regulates light-dependent shoot gravitropism.
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	shoot gravitropism	The rice actin-binding protein RMD regulates light-dependent shoot gravitropism.	By contrast, etiolated rmd shoots displayed normal negative shoot gravitropism
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	shoot	The rice actin-binding protein RMD regulates light-dependent shoot gravitropism.	The rice actin-binding protein RMD regulates light-dependent shoot gravitropism.
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	shoot	The rice actin-binding protein RMD regulates light-dependent shoot gravitropism.	By contrast, etiolated rmd shoots displayed normal negative shoot gravitropism
FH5|RMD|BUI1	Os07g0596300	LOC_Os07g40510|LOC_Os07g40520	auxin	The rice actin-binding protein RMD regulates light-dependent shoot gravitropism.	Furthermore, we show that RMD maintains an actin configuration that promotes statolith mobility in gravisensing endodermal cells, and for proper auxin distribution in light-grown, but not dark-grown, shoots
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	auxin	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	tryptophan aminotransferase	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	small leaves	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	FIB encodes an orthologue of TAA genes and loss of FIB function resulted in pleiotropic abnormal phenotypes, such as small leaves with large lamina joint angles,
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	large lamina joint angles	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	FIB encodes an orthologue of TAA genes and loss of FIB function resulted in pleiotropic abnormal phenotypes, such as small leaves with large lamina joint angles,
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	IAA	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	FIB encodes an orthologue of TAA genes and loss of FIB function resulted in pleiotropic abnormal phenotypes, such as small leaves with large lamina joint angles, abnormal vascular development, small panicles, abnormal organ identity and defects in root development, together with a reduction in internal IAA levels.
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	IAA biosynthesis	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	FIB encodes an orthologue of TAA genes and loss of FIB function resulted in pleiotropic abnormal phenotypes, such as small leaves with large lamina joint angles, abnormal vascular development, small panicles, abnormal organ identity and defects in root development, together with a reduction in internal IAA levels.
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	IAA biosynthesis	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	From these results, we suggest that FIB plays a pivotal role in IAA biosynthesis in rice and that auxin biosynthesis, transport and sensitivity are closely interrelated.
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	auxin biosynthesis	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	From these results, we suggest that FIB plays a pivotal role in IAA biosynthesis in rice and that auxin biosynthesis, transport and sensitivity are closely interrelated.
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	auxin transport	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	From these results, we suggest that FIB plays a pivotal role in IAA biosynthesis in rice and that auxin biosynthesis, transport and sensitivity are closely interrelated.
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	vascular development	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	FIB encodes an orthologue of TAA genes and loss of FIB function resulted in pleiotropic abnormal phenotypes, such as small leaves with large lamina joint angles, abnormal vascular development, small panicles, abnormal organ identity and defects in root development, together with a reduction in internal IAA levels.
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	panicle	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	FIB encodes an orthologue of TAA genes and loss of FIB function resulted in pleiotropic abnormal phenotypes, such as small leaves with large lamina joint angles, abnormal vascular development, small panicles, abnormal organ identity and defects in root development, together with a reduction in internal IAA levels.
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	organ identity	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	FIB encodes an orthologue of TAA genes and loss of FIB function resulted in pleiotropic abnormal phenotypes, such as small leaves with large lamina joint angles, abnormal vascular development, small panicles, abnormal organ identity and defects in root development, together with a reduction in internal IAA levels.
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	root development	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes	FIB encodes an orthologue of TAA genes and loss of FIB function resulted in pleiotropic abnormal phenotypes, such as small leaves with large lamina joint angles, abnormal vascular development, small panicles, abnormal organ identity and defects in root development, together with a reduction in internal IAA levels.
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	grain	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 TSG1 knockout resulted in an increased tiller number but reduction in grain number and size, and decrease in height
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	tiller	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 TSG1 knockout resulted in an increased tiller number but reduction in grain number and size, and decrease in height
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	grain number	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 TSG1 knockout resulted in an increased tiller number but reduction in grain number and size, and decrease in height
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	auxin	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 These findings suggest that TSG1 dominates the tryptophan aminotransferase family, playing a prominent role in local auxin biosynthesis in rice
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	iaa	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 The tsg1 mutant showed hypersensitivity to IAA and the competitive inhibitor of aminotransferase, L-kynurenine
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	height	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 TSG1 knockout resulted in an increased tiller number but reduction in grain number and size, and decrease in height
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	tiller number	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 TSG1 knockout resulted in an increased tiller number but reduction in grain number and size, and decrease in height
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	tryptophan aminotransferase	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 TSG1 encodes a tryptophan aminotransferase that is allelic to the FISH BONE (FIB) gene
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	tryptophan aminotransferase	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 Meanwhile, deletion of the TSG1 homologs OsTAR1, OsTARL1, and OsTARL2 caused no obvious changes, although the phenotype of the TSG1/OsTAR1 double mutant was intensified and infertile, suggesting gene redundancy in the rice tryptophan aminotransferase family
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	tryptophan aminotransferase	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 These findings suggest that TSG1 dominates the tryptophan aminotransferase family, playing a prominent role in local auxin biosynthesis in rice
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	IAA	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 The tsg1 mutant showed hypersensitivity to IAA and the competitive inhibitor of aminotransferase, L-kynurenine
FIB|TSG1|OsFIB|MHZ10|OsTAR2	Os01g0169800	LOC_Os01g07500	auxin biosynthesis	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	 These findings suggest that TSG1 dominates the tryptophan aminotransferase family, playing a prominent role in local auxin biosynthesis in rice
FKF1|OsFKF1	Os11g0547000	LOC_Os11g34460	flower	Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod.	Here we show that osfkf1 mutants flower late under SD, LD, and natural LD conditions
FKF1|OsFKF1	Os11g0547000	LOC_Os11g34460	floral	Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod.	Transcriptional analysis revealed that OsFKF1 up-regulates expression of the floral activator Ehd2 and down-regulates expression of the floral repressor Ghd7; these regulators up- and down-regulate Ehd1 expression, respectively
FKF1|OsFKF1	Os11g0547000	LOC_Os11g34460	floral	Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod.	In contrast to the LD-specific floral activator Arabidopsis FKF1, OsFKF1 likely acts as an autonomous floral activator because it promotes flowering independent of photoperiod, probably via its distinct roles in controlling expression of rice-specific genes including Ehd2, Ghd7, and Ehd1
FLA	Os11g0473200	LOC_Os11g28360	chloroplast	FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice.	Our data suggest that FLA plays an important role in the development of floral organs and chloroplast in rice, but that this role probably does not involve deubiquitination activity, because FLA does not have an active site and deubiquitination activity
FLA	Os11g0473200	LOC_Os11g28360	development	FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice.	Our data suggest that FLA plays an important role in the development of floral organs and chloroplast in rice, but that this role probably does not involve deubiquitination activity, because FLA does not have an active site and deubiquitination activity
FLA	Os11g0473200	LOC_Os11g28360	floral	FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice.	FLA is a ubiquitously expressed gene with the highest expression in floral organs
FLA	Os11g0473200	LOC_Os11g28360	floral	FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice.	Our data suggest that FLA plays an important role in the development of floral organs and chloroplast in rice, but that this role probably does not involve deubiquitination activity, because FLA does not have an active site and deubiquitination activity
FLA	Os11g0473200	LOC_Os11g28360	floral organ	FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice.	FLA is a ubiquitously expressed gene with the highest expression in floral organs
FLA	Os11g0473200	LOC_Os11g28360	floral organ	FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice.	Our data suggest that FLA plays an important role in the development of floral organs and chloroplast in rice, but that this role probably does not involve deubiquitination activity, because FLA does not have an active site and deubiquitination activity
FLO10	Os03g0168400	LOC_Os03g07220	development	Rice FLOURY ENDOSPERM10 encodes a pentatricopeptide repeat protein that is essential for the trans-splicing of mitochondrial nad1 intron 1 and endosperm development.	<U+2022>These results reveal that FLO10 plays an important role in the maintenance of mitochondrial function and endosperm development through affecting the trans-splicing of mitochondrial nad1 intron 1 in rice
FLO10	Os03g0168400	LOC_Os03g07220	mitochondria	Rice FLOURY ENDOSPERM10 encodes a pentatricopeptide repeat protein that is essential for the trans-splicing of mitochondrial nad1 intron 1 and endosperm development.	Map-based cloning and rescued experiments showed that FLO10 encodes a P-type PPR protein with 26 PPR motifs, which is localized to mitochondria
FLO10	Os03g0168400	LOC_Os03g07220	map-based cloning	Rice FLOURY ENDOSPERM10 encodes a pentatricopeptide repeat protein that is essential for the trans-splicing of mitochondrial nad1 intron 1 and endosperm development.	Map-based cloning and rescued experiments showed that FLO10 encodes a P-type PPR protein with 26 PPR motifs, which is localized to mitochondria
FLO10	Os03g0168400	LOC_Os03g07220	endosperm	Rice FLOURY ENDOSPERM10 encodes a pentatricopeptide repeat protein that is essential for the trans-splicing of mitochondrial nad1 intron 1 and endosperm development.	<U+2022>These results reveal that FLO10 plays an important role in the maintenance of mitochondrial function and endosperm development through affecting the trans-splicing of mitochondrial nad1 intron 1 in rice
FLO10	Os03g0168400	LOC_Os03g07220	R protein	Rice FLOURY ENDOSPERM10 encodes a pentatricopeptide repeat protein that is essential for the trans-splicing of mitochondrial nad1 intron 1 and endosperm development.	Map-based cloning and rescued experiments showed that FLO10 encodes a P-type PPR protein with 26 PPR motifs, which is localized to mitochondria
FLO10	Os03g0168400	LOC_Os03g07220	endosperm development	Rice FLOURY ENDOSPERM10 encodes a pentatricopeptide repeat protein that is essential for the trans-splicing of mitochondrial nad1 intron 1 and endosperm development.	<U+2022>These results reveal that FLO10 plays an important role in the maintenance of mitochondrial function and endosperm development through affecting the trans-splicing of mitochondrial nad1 intron 1 in rice
FLO11	Os12g0244100	LOC_Os12g14070	development	FLOURY ENDOSPERM11 encoding a plastid heat shock protein 70 is essential for amyloplast development in rice.	Semi-thin section revealed defective amyloplast development in the flo11 endosperm
FLO11	Os12g0244100	LOC_Os12g14070	map-based cloning	FLOURY ENDOSPERM11 encoding a plastid heat shock protein 70 is essential for amyloplast development in rice.	Map-based cloning and subsequent complementation test demonstrated that FLO11 encoded a plastid-localized heat shock protein 70 (OsHsp70cp-2)
FLO11	Os12g0244100	LOC_Os12g14070	endosperm	FLOURY ENDOSPERM11 encoding a plastid heat shock protein 70 is essential for amyloplast development in rice.	Semi-thin section revealed defective amyloplast development in the flo11 endosperm
FLO15|OsGLYI7	Os05g0230900	LOC_Os05g14194	starch	FLOURY ENDOSPERM15 encodes a glyoxalase I involved in compound granule formation and starch synthesis in rice endosperm.	The flo15 grains were characterized by defects in compound starch granule development, along with decreased starch content
FLO15|OsGLYI7	Os05g0230900	LOC_Os05g14194	starch	FLOURY ENDOSPERM15 encodes a glyoxalase I involved in compound granule formation and starch synthesis in rice endosperm.	Moreover, the expression of starch synthesis-related genes was obviously altered in the flo15 mutants
FLO15|OsGLYI7	Os05g0230900	LOC_Os05g14194	starch	FLOURY ENDOSPERM15 encodes a glyoxalase I involved in compound granule formation and starch synthesis in rice endosperm.	These findings suggest that FLO15 plays an important role in compound starch granule formation and starch synthesis in rice endosperm
FLO15|OsGLYI7	Os05g0230900	LOC_Os05g14194	map-based cloning	FLOURY ENDOSPERM15 encodes a glyoxalase I involved in compound granule formation and starch synthesis in rice endosperm.	Map-based cloning of the flo15 mutants identified mutations in OsGLYI7, which encodes a glyoxalase I (GLYI) involved in methylglyoxal (MG) detoxification
FLO15|OsGLYI7	Os05g0230900	LOC_Os05g14194	endosperm	FLOURY ENDOSPERM15 encodes a glyoxalase I involved in compound granule formation and starch synthesis in rice endosperm.	These findings suggest that FLO15 plays an important role in compound starch granule formation and starch synthesis in rice endosperm
FLO16	Os10g0478200	LOC_Os10g33800	grain	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	In this study, we isolated a novel floury endosperm rice (Oryza sativa) mutant flo16 with defective starch grain (SG) formation
FLO16	Os10g0478200	LOC_Os10g33800	grain	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	Overexpression of FLO16 significantly improved grain weight, suggesting a possible application of FLO16 in rice breeding
FLO16	Os10g0478200	LOC_Os10g33800	starch	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	In this study, we isolated a novel floury endosperm rice (Oryza sativa) mutant flo16 with defective starch grain (SG) formation
FLO16	Os10g0478200	LOC_Os10g33800	starch	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	Our results indicated that FLO16 plays a critical role in redox homeostasis that is important for compound SG formation and subsequent starch biosynthesis in rice endosperm
FLO16	Os10g0478200	LOC_Os10g33800	map-based cloning	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	Map-based cloning and complementation tests demonstrated that FLO16 encodes a NAD-dependent cytosolic malate dehydrogenase (CMDH)
FLO16	Os10g0478200	LOC_Os10g33800	homeostasis	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	Our results indicated that FLO16 plays a critical role in redox homeostasis that is important for compound SG formation and subsequent starch biosynthesis in rice endosperm
FLO16	Os10g0478200	LOC_Os10g33800	endosperm	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	In this study, we isolated a novel floury endosperm rice (Oryza sativa) mutant flo16 with defective starch grain (SG) formation
FLO16	Os10g0478200	LOC_Os10g33800	endosperm	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	Our results indicated that FLO16 plays a critical role in redox homeostasis that is important for compound SG formation and subsequent starch biosynthesis in rice endosperm
FLO16	Os10g0478200	LOC_Os10g33800	breeding	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	Overexpression of FLO16 significantly improved grain weight, suggesting a possible application of FLO16 in rice breeding
FLO16	Os10g0478200	LOC_Os10g33800	grain weight	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	Overexpression of FLO16 significantly improved grain weight, suggesting a possible application of FLO16 in rice breeding
FLO16	Os10g0478200	LOC_Os10g33800	starch biosynthesis	FLOURY ENDOSPERM16 Encoding a NAD-dependent Cytosolic Malate Dehydrogenase Plays an Important Role in Starch Synthesis and Seed Development in Rice.	Our results indicated that FLO16 plays a critical role in redox homeostasis that is important for compound SG formation and subsequent starch biosynthesis in rice endosperm
FLO18	Os07g0688100	LOC_Os07g48850	development	Rice FLOURY ENDOSPERM 18 encodes a pentatricopeptide repeat protein required for 5&#39; processing of mitochondrial nad5 messenger RNA and endosperm development.	These results suggested that FLO18 is involved in 5&#39;-end processing of nad5 messenger RNA and plays an important role in mitochondrial function and endosperm development
FLO18	Os07g0688100	LOC_Os07g48850	map-based cloning	Rice FLOURY ENDOSPERM 18 encodes a pentatricopeptide repeat protein required for 5&#39; processing of mitochondrial nad5 messenger RNA and endosperm development.	Map-based cloning and complementation tests showed that FLO18 encodes a mitochondrion-targeted P-type PPR protein with 15 PPR motifs
FLO18	Os07g0688100	LOC_Os07g48850	R protein	Rice FLOURY ENDOSPERM 18 encodes a pentatricopeptide repeat protein required for 5&#39; processing of mitochondrial nad5 messenger RNA and endosperm development.	Map-based cloning and complementation tests showed that FLO18 encodes a mitochondrion-targeted P-type PPR protein with 15 PPR motifs
FLO18	Os07g0688100	LOC_Os07g48850	endosperm	Rice FLOURY ENDOSPERM 18 encodes a pentatricopeptide repeat protein required for 5&#39; processing of mitochondrial nad5 messenger RNA and endosperm development.	These results suggested that FLO18 is involved in 5&#39;-end processing of nad5 messenger RNA and plays an important role in mitochondrial function and endosperm development
FLO18	Os07g0688100	LOC_Os07g48850	endosperm development	Rice FLOURY ENDOSPERM 18 encodes a pentatricopeptide repeat protein required for 5&#39; processing of mitochondrial nad5 messenger RNA and endosperm development.	These results suggested that FLO18 is involved in 5&#39;-end processing of nad5 messenger RNA and plays an important role in mitochondrial function and endosperm development
FLO2	Os04g0645100	LOC_Os04g55230	grain size	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	The rice flo2 mutation resulted in reduced grain size and starch quality
FLO2	Os04g0645100	LOC_Os04g55230	grain size	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	These results suggest that FLO2 plays a pivotal regulatory role in rice grain size and starch quality by affecting storage substance accumulation in the endosperm
FLO2	Os04g0645100	LOC_Os04g55230	starch	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	The rice flo2 mutation resulted in reduced grain size and starch quality
FLO2	Os04g0645100	LOC_Os04g55230	starch	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	FLO2 was abundantly expressed in developing seeds coincident with production of storage starch and protein, as well as in leaves, while abundant expression of its homologs was observed only in leaves
FLO2	Os04g0645100	LOC_Os04g55230	starch	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	The flo2 mutation decreased expression of genes involved in production of storage starch and storage proteins in the endosperm
FLO2	Os04g0645100	LOC_Os04g55230	starch	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	These results suggest that FLO2 plays a pivotal regulatory role in rice grain size and starch quality by affecting storage substance accumulation in the endosperm
FLO2	Os04g0645100	LOC_Os04g55230	seed development	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	Differences between cultivars in their responsiveness of FLO2 expression during high-temperature stress indicated that FLO2 may be involved in heat tolerance during seed development
FLO2	Os04g0645100	LOC_Os04g55230	endosperm	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	Map-based cloning identified FLOURY ENDOSPERM2 (FLO2), a member of a novel gene family conserved in plants, as the gene responsible for the rice flo2 mutation
FLO2	Os04g0645100	LOC_Os04g55230	endosperm	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	The flo2 mutation decreased expression of genes involved in production of storage starch and storage proteins in the endosperm
FLO2	Os04g0645100	LOC_Os04g55230	endosperm	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	These results suggest that FLO2 plays a pivotal regulatory role in rice grain size and starch quality by affecting storage substance accumulation in the endosperm
FLO2	Os04g0645100	LOC_Os04g55230	grain	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	The rice flo2 mutation resulted in reduced grain size and starch quality
FLO2	Os04g0645100	LOC_Os04g55230	grain	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	Overexpression of FLO2 enlarged the size of grains significantly
FLO2	Os04g0645100	LOC_Os04g55230	grain	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	These results suggest that FLO2 plays a pivotal regulatory role in rice grain size and starch quality by affecting storage substance accumulation in the endosperm
FLO2	Os04g0645100	LOC_Os04g55230	seed	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	FLO2 was abundantly expressed in developing seeds coincident with production of storage starch and protein, as well as in leaves, while abundant expression of its homologs was observed only in leaves
FLO2	Os04g0645100	LOC_Os04g55230	seed	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	Differences between cultivars in their responsiveness of FLO2 expression during high-temperature stress indicated that FLO2 may be involved in heat tolerance during seed development
FLO2	Os04g0645100	LOC_Os04g55230	temperature	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality	Differences between cultivars in their responsiveness of FLO2 expression during high-temperature stress indicated that FLO2 may be involved in heat tolerance during seed development
FLO2	Os04g0645100	LOC_Os04g55230	grain	Three novel alleles of FLOURY ENDOSPERM2 (FLO2) confer dull grains with low amylose content in rice.	The effect of the flo2 mutations on the physicochemical properties of the grain included a low breakdown, setback, and consistency of rice, indicating a good elasticity and soft texture of cooked rice grains
FLO2	Os04g0645100	LOC_Os04g55230	starch	Three novel alleles of FLOURY ENDOSPERM2 (FLO2) confer dull grains with low amylose content in rice.	The allelic diversity of flo2 perturbed the expression of starch synthesis-related genes including OsAGPL2, OsAGPS2b, OsGBSSI, OsBEI, OsBEIIb, OsISA1, and OsPUL
FLO2	Os04g0645100	LOC_Os04g55230	temperature	Generation of new rice germplasms with low amylose content by CRISPR/CAS9-targeted mutagenesis of the FLOURY ENDOSPERM 2 gene.	 Physiochemical analyses of the flo2 mutants were congruent with previous studies, exhibiting lowered AC and viscosity, risen gel consistency (GC) and gelatinization temperature (GT) values, which were all instrumental to the improvement of ECQ
FLO2	Os04g0645100	LOC_Os04g55230	grain	Generation of new rice germplasms with low amylose content by CRISPR/CAS9-targeted mutagenesis of the FLOURY ENDOSPERM 2 gene.	 The diversity of flo2 allele is attributable for the variations in grain appearance, amylose content (AC), and physicochemical properties, influencing the eating and cooking quality (ECQ) of rice
FLO2	Os04g0645100	LOC_Os04g55230	quality	Generation of new rice germplasms with low amylose content by CRISPR/CAS9-targeted mutagenesis of the FLOURY ENDOSPERM 2 gene.	 The diversity of flo2 allele is attributable for the variations in grain appearance, amylose content (AC), and physicochemical properties, influencing the eating and cooking quality (ECQ) of rice
FLO2	Os04g0645100	LOC_Os04g55230	amylose content	Generation of new rice germplasms with low amylose content by CRISPR/CAS9-targeted mutagenesis of the FLOURY ENDOSPERM 2 gene.	 The diversity of flo2 allele is attributable for the variations in grain appearance, amylose content (AC), and physicochemical properties, influencing the eating and cooking quality (ECQ) of rice
FLO22	Os07g0179000	LOC_Os07g08180	growth	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 The present work indicated that FLO22 plays an important role in endosperm development and plant growth by participating in nad1 maturation and multi-site editing of mitochondrial mRNA
FLO22	Os07g0179000	LOC_Os07g08180	development	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 The present work indicated that FLO22 plays an important role in endosperm development and plant growth by participating in nad1 maturation and multi-site editing of mitochondrial mRNA
FLO22	Os07g0179000	LOC_Os07g08180	starch	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 RNA-seq analysis showed that expression levels of many genes involved in starch and sucrose metabolism were significantly down-regulated in the flo22 mutant compared with the wild type, whereas genes related to oxidative phosphorylation and the tricarboxylic acid (TCA) cycle were significantly up-regulated
FLO22	Os07g0179000	LOC_Os07g08180	map-based cloning	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 Map-based cloning and complementation tests demonstrated that FLO22 encodes a mitochondrion-localized P-type PPR protein
FLO22	Os07g0179000	LOC_Os07g08180	oxidative	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 RNA-seq analysis showed that expression levels of many genes involved in starch and sucrose metabolism were significantly down-regulated in the flo22 mutant compared with the wild type, whereas genes related to oxidative phosphorylation and the tricarboxylic acid (TCA) cycle were significantly up-regulated
FLO22	Os07g0179000	LOC_Os07g08180	R protein	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 Map-based cloning and complementation tests demonstrated that FLO22 encodes a mitochondrion-localized P-type PPR protein
FLO22	Os07g0179000	LOC_Os07g08180	R protein	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 In addition to involving in splicing as a P-type PPR protein, we found that FLO22 interacted with DYW3, a DYW-type PPR protein, and they may function synergistically in mitochondrial RNA editing
FLO22	Os07g0179000	LOC_Os07g08180	plant growth	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 The present work indicated that FLO22 plays an important role in endosperm development and plant growth by participating in nad1 maturation and multi-site editing of mitochondrial mRNA
FLO22	Os07g0179000	LOC_Os07g08180	endosperm	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 The present work indicated that FLO22 plays an important role in endosperm development and plant growth by participating in nad1 maturation and multi-site editing of mitochondrial mRNA
FLO22	Os07g0179000	LOC_Os07g08180	sucrose	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 RNA-seq analysis showed that expression levels of many genes involved in starch and sucrose metabolism were significantly down-regulated in the flo22 mutant compared with the wild type, whereas genes related to oxidative phosphorylation and the tricarboxylic acid (TCA) cycle were significantly up-regulated
FLO22	Os07g0179000	LOC_Os07g08180	endosperm development	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	 The present work indicated that FLO22 plays an important role in endosperm development and plant growth by participating in nad1 maturation and multi-site editing of mitochondrial mRNA
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	pericarp	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	Immunoblot analysis of separated seed tissue fractions (pericarp, embryo + aleurone, seed embryo) revealed that regulatory phosphorylation of PPDK occurs in the non-green seed embryo and green outer pericarp layer, but not in the endosperm + aleurone layer
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	grain	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB)	Our results suggest that cytosolic PPDK functions in rice to modulate carbon metabolism during grain filling
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	endosperm	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB)	We have isolated a floury endosperm-4 (flo4) rice mutant with a floury-white endosperm but a normal outer portion
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	endosperm	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB)	We obtained two additional alleles, flo4-2 and flo4-3, that also showed the same white-core endosperm phenotype
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	reproductive	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB)	Expression analyses demonstrated that the cytosolic mRNA of OsPPDKB was induced in the reproductive organs after pollination, and greatly increased until about 10 days after fertilization
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	seed	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	The single C3 organ type where PPDK is in high abundance, and, therefore, where its function is most amenable to elucidation, are the developing seeds of graminaceous cereals
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	seed	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	In this report, we suggest a non-photosynthetic function for C3 PPDK by characterizing its abundance and posttranslational regulation in developing Oryza sativa (rice) seeds
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	seed	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	Using primarily an immunoblot-based approach, we show that PPDK is a massively expressed protein during the early syncitial-endosperm/-cellularization stage of seed development
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	seed	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	As seed development progresses from this early stage, the enzyme undergoes a rapid, posttranslational down-regulation in activity and amount via regulatory threonyl-phosphorylation (PPDK inactivation) and protein degradation
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	seed	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	Immunoblot analysis of separated seed tissue fractions (pericarp, embryo + aleurone, seed embryo) revealed that regulatory phosphorylation of PPDK occurs in the non-green seed embryo and green outer pericarp layer, but not in the endosperm + aleurone layer
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	seed	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	The modestly abundant pool of inactive PPDK (phosphorylated + dephosphorylated) that was found to persist in mature rice seeds was shown to remain largely unchanged (inactive) upon seed germination, suggesting that PPDK in rice seeds function in developmental rather than in post-developmental processes
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	endosperm	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB)	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB)
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	seed development	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	Using primarily an immunoblot-based approach, we show that PPDK is a massively expressed protein during the early syncitial-endosperm/-cellularization stage of seed development
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	seed development	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	As seed development progresses from this early stage, the enzyme undergoes a rapid, posttranslational down-regulation in activity and amount via regulatory threonyl-phosphorylation (PPDK inactivation) and protein degradation
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	grain filling	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB)	Our results suggest that cytosolic PPDK functions in rice to modulate carbon metabolism during grain filling
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	seed germination	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	The modestly abundant pool of inactive PPDK (phosphorylated + dephosphorylated) that was found to persist in mature rice seeds was shown to remain largely unchanged (inactive) upon seed germination, suggesting that PPDK in rice seeds function in developmental rather than in post-developmental processes
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	endosperm	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	Using primarily an immunoblot-based approach, we show that PPDK is a massively expressed protein during the early syncitial-endosperm/-cellularization stage of seed development
FLO4|OsPPDKB|ppdk|OsC4PPDK	Os05g0405000	LOC_Os05g33570	endosperm	Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds	Immunoblot analysis of separated seed tissue fractions (pericarp, embryo + aleurone, seed embryo) revealed that regulatory phosphorylation of PPDK occurs in the non-green seed embryo and green outer pericarp layer, but not in the endosperm + aleurone layer
FLO6	Os03g0686900	LOC_Os03g48170	endosperm	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm	Here, we report the cloning and characterization of the FLOURY ENDOSPERM6 (FLO6) gene in rice
FLO6	Os03g0686900	LOC_Os03g48170	endosperm	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm	Significantly, flo6 mutant endosperm cells show obvious defects in compound granule formation
FLO6	Os03g0686900	LOC_Os03g48170	seed	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm	We thus propose that FLO6 may act as a starch-binding protein involved in starch synthesis and compound granule formation through a direct interaction with ISA1 in developing rice seeds
FLO6	Os03g0686900	LOC_Os03g48170	starch	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm	In the flo6 mutant, the starch content is decreased and the normal physicochemical features of starch are changed
FLO6	Os03g0686900	LOC_Os03g48170	starch	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm	Furthermore, FLO6 can interact with isoamylase1 (ISA1) both in vitro and in vivo, whereas ISA1 does not bind to starch directly
FLO6	Os03g0686900	LOC_Os03g48170	starch	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm	We thus propose that FLO6 may act as a starch-binding protein involved in starch synthesis and compound granule formation through a direct interaction with ISA1 in developing rice seeds
FLO7	Os10g0463800	LOC_Os10g32680	grain	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Notably, flo7 peripheral endosperm cells showed obvious defects in compound starch grain development
FLO7	Os10g0463800	LOC_Os10g32680	starch	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Notably, flo7 peripheral endosperm cells showed obvious defects in compound starch grain development
FLO7	Os10g0463800	LOC_Os10g32680	starch	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Together, our findings identify FLO7 as a unique plant regulator required for starch synthesis and amyloplast development within the peripheral endosperm and provide new insights into the spatial regulation of endosperm development in rice
FLO7	Os10g0463800	LOC_Os10g32680	development	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Notably, flo7 peripheral endosperm cells showed obvious defects in compound starch grain development
FLO7	Os10g0463800	LOC_Os10g32680	development	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Together, our findings identify FLO7 as a unique plant regulator required for starch synthesis and amyloplast development within the peripheral endosperm and provide new insights into the spatial regulation of endosperm development in rice
FLO7	Os10g0463800	LOC_Os10g32680	map-based cloning	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Map-based cloning of FLO7 revealed that it encodes a protein of unknown function
FLO7	Os10g0463800	LOC_Os10g32680	endosperm	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Consistent with the phenotypic alternation in flo7 endosperm, the flo7 mutant had reduced amylose content and seriously disrupted amylopectin structure only in the peripheral endosperm
FLO7	Os10g0463800	LOC_Os10g32680	endosperm	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Notably, flo7 peripheral endosperm cells showed obvious defects in compound starch grain development
FLO7	Os10g0463800	LOC_Os10g32680	endosperm	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	FLO7 harbors an N-terminal transit peptide capable of targeting functional FLO7 fused to green fluorescent protein to amyloplast stroma in developing endosperm cells, and a domain of unknown function 1338 (DUF1338) that is highly conserved in green plants
FLO7	Os10g0463800	LOC_Os10g32680	endosperm	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Furthermore, our combined β-glucuronidase activity and RNA in situ hybridization assays showed that the FLO7 gene was expressed ubiquitously but exhibited a specific expression in the endosperm periphery
FLO7	Os10g0463800	LOC_Os10g32680	endosperm	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Moreover, a set of in vivo experiments demonstrated that the missing 32 aa in the flo7 mutant protein are essential for the stable accumulation of FLO7 in the endosperm
FLO7	Os10g0463800	LOC_Os10g32680	endosperm	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Together, our findings identify FLO7 as a unique plant regulator required for starch synthesis and amyloplast development within the peripheral endosperm and provide new insights into the spatial regulation of endosperm development in rice
FLO7	Os10g0463800	LOC_Os10g32680	endosperm development	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	Together, our findings identify FLO7 as a unique plant regulator required for starch synthesis and amyloplast development within the peripheral endosperm and provide new insights into the spatial regulation of endosperm development in rice
FLO7	Os10g0463800	LOC_Os10g32680	stroma	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	FLO7 harbors an N-terminal transit peptide capable of targeting functional FLO7 fused to green fluorescent protein to amyloplast stroma in developing endosperm cells, and a domain of unknown function 1338 (DUF1338) that is highly conserved in green plants
FLOC1	Os03g0663800	LOC_Os03g46100	seed	A novel FLOURY ENDOSPERM2 (FLO2)-interacting protein, is involved in maintaining fertility and seed quality in rice.	These findings suggest that FLOC1 is involved not only in seed fertility but also in seed quality
FLOC1	Os03g0663800	LOC_Os03g46100	seed	A novel FLOURY ENDOSPERM2 (FLO2)-interacting protein, is involved in maintaining fertility and seed quality in rice.	these findings imply that there is a difference in the functions of FLO2 and FLOC1 although both of appear to be involved in the control of seed quality during seed formation
FLOC1	Os03g0663800	LOC_Os03g46100	fertility	A novel FLOURY ENDOSPERM2 (FLO2)-interacting protein, is involved in maintaining fertility and seed quality in rice.	A knock-down transformant of FLOC1 showed significantly reducted fertility and generation of seeds with abnormal features
FLOC1	Os03g0663800	LOC_Os03g46100	fertility	A novel FLOURY ENDOSPERM2 (FLO2)-interacting protein, is involved in maintaining fertility and seed quality in rice.	These findings suggest that FLOC1 is involved not only in seed fertility but also in seed quality
FLOC1	Os03g0663800	LOC_Os03g46100	quality	A novel FLOURY ENDOSPERM2 (FLO2)-interacting protein, is involved in maintaining fertility and seed quality in rice.	These findings suggest that FLOC1 is involved not only in seed fertility but also in seed quality
FLOC1	Os03g0663800	LOC_Os03g46100	quality	A novel FLOURY ENDOSPERM2 (FLO2)-interacting protein, is involved in maintaining fertility and seed quality in rice.	these findings imply that there is a difference in the functions of FLO2 and FLOC1 although both of appear to be involved in the control of seed quality during seed formation
FLR11	Os10g0534500	LOC_Os10g39010	growth	Mutations of two FERONIA-like receptor genes enhance rice blast resistance without growth penalty.	Using these genetic resources, we found that mutations in the FLR2 and FLR11 genes provide resistance to rice blast without a profound growth penalty
FLR11	Os10g0534500	LOC_Os10g39010	resistance	Mutations of two FERONIA-like receptor genes enhance rice blast resistance without growth penalty.	Using these genetic resources, we found that mutations in the FLR2 and FLR11 genes provide resistance to rice blast without a profound growth penalty
FLR11	Os10g0534500	LOC_Os10g39010	blast	Mutations of two FERONIA-like receptor genes enhance rice blast resistance without growth penalty.	Using these genetic resources, we found that mutations in the FLR2 and FLR11 genes provide resistance to rice blast without a profound growth penalty
FLR14	Os01g0155500	LOC_Os01g06280	grain	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Knockouts of FLR3 and/or FLR14 increased the number of white-core grains caused by aberrant accumulation of storage substances, resulting in poor grain quality
FLR14	Os01g0155500	LOC_Os01g06280	grain	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Conversely, the overexpression of FLR3 or FLR14 reduced grain chalkiness and improved grain quality
FLR14	Os01g0155500	LOC_Os01g06280	grain	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR14	Os01g0155500	LOC_Os01g06280	stress	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Transcriptome and metabolome analyses showed that genes and metabolites involved in the oxidative stress response were significantly up-regulated in flr3 and flr14 grains
FLR14	Os01g0155500	LOC_Os01g06280	stress	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR14	Os01g0155500	LOC_Os01g06280	grain quality	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Knockouts of FLR3 and/or FLR14 increased the number of white-core grains caused by aberrant accumulation of storage substances, resulting in poor grain quality
FLR14	Os01g0155500	LOC_Os01g06280	grain quality	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Conversely, the overexpression of FLR3 or FLR14 reduced grain chalkiness and improved grain quality
FLR14	Os01g0155500	LOC_Os01g06280	quality	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Knockouts of FLR3 and/or FLR14 increased the number of white-core grains caused by aberrant accumulation of storage substances, resulting in poor grain quality
FLR14	Os01g0155500	LOC_Os01g06280	quality	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Conversely, the overexpression of FLR3 or FLR14 reduced grain chalkiness and improved grain quality
FLR14	Os01g0155500	LOC_Os01g06280	oxidative stress	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Transcriptome and metabolome analyses showed that genes and metabolites involved in the oxidative stress response were significantly up-regulated in flr3 and flr14 grains
FLR14	Os01g0155500	LOC_Os01g06280	oxidative stress	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR14	Os01g0155500	LOC_Os01g06280	oxidative	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Transcriptome and metabolome analyses showed that genes and metabolites involved in the oxidative stress response were significantly up-regulated in flr3 and flr14 grains
FLR14	Os01g0155500	LOC_Os01g06280	oxidative	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR14	Os01g0155500	LOC_Os01g06280	endosperm	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 The content of reactive oxygen species was significantly increased in flr3 and flr14 mutant endosperm but decreased in overexpression lines
FLR14	Os01g0155500	LOC_Os01g06280	endosperm	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR14	Os01g0155500	LOC_Os01g06280	chalkiness	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Conversely, the overexpression of FLR3 or FLR14 reduced grain chalkiness and improved grain quality
FLR14	Os01g0155500	LOC_Os01g06280	chalkiness	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR14	Os01g0155500	LOC_Os01g06280	reactive oxygen species	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 The content of reactive oxygen species was significantly increased in flr3 and flr14 mutant endosperm but decreased in overexpression lines
FLR14	Os01g0155500	LOC_Os01g06280	stress response	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Transcriptome and metabolome analyses showed that genes and metabolites involved in the oxidative stress response were significantly up-regulated in flr3 and flr14 grains
FLR3	Os05g0318700	LOC_Os05g25450	grain	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Knockouts of FLR3 and/or FLR14 increased the number of white-core grains caused by aberrant accumulation of storage substances, resulting in poor grain quality
FLR3	Os05g0318700	LOC_Os05g25450	grain	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Conversely, the overexpression of FLR3 or FLR14 reduced grain chalkiness and improved grain quality
FLR3	Os05g0318700	LOC_Os05g25450	grain	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR3	Os05g0318700	LOC_Os05g25450	stress	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Transcriptome and metabolome analyses showed that genes and metabolites involved in the oxidative stress response were significantly up-regulated in flr3 and flr14 grains
FLR3	Os05g0318700	LOC_Os05g25450	stress	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR3	Os05g0318700	LOC_Os05g25450	grain quality	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Knockouts of FLR3 and/or FLR14 increased the number of white-core grains caused by aberrant accumulation of storage substances, resulting in poor grain quality
FLR3	Os05g0318700	LOC_Os05g25450	grain quality	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Conversely, the overexpression of FLR3 or FLR14 reduced grain chalkiness and improved grain quality
FLR3	Os05g0318700	LOC_Os05g25450	quality	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Knockouts of FLR3 and/or FLR14 increased the number of white-core grains caused by aberrant accumulation of storage substances, resulting in poor grain quality
FLR3	Os05g0318700	LOC_Os05g25450	quality	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Conversely, the overexpression of FLR3 or FLR14 reduced grain chalkiness and improved grain quality
FLR3	Os05g0318700	LOC_Os05g25450	oxidative stress	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Transcriptome and metabolome analyses showed that genes and metabolites involved in the oxidative stress response were significantly up-regulated in flr3 and flr14 grains
FLR3	Os05g0318700	LOC_Os05g25450	oxidative stress	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR3	Os05g0318700	LOC_Os05g25450	oxidative	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Transcriptome and metabolome analyses showed that genes and metabolites involved in the oxidative stress response were significantly up-regulated in flr3 and flr14 grains
FLR3	Os05g0318700	LOC_Os05g25450	oxidative	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR3	Os05g0318700	LOC_Os05g25450	endosperm	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 The content of reactive oxygen species was significantly increased in flr3 and flr14 mutant endosperm but decreased in overexpression lines
FLR3	Os05g0318700	LOC_Os05g25450	endosperm	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR3	Os05g0318700	LOC_Os05g25450	chalkiness	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Conversely, the overexpression of FLR3 or FLR14 reduced grain chalkiness and improved grain quality
FLR3	Os05g0318700	LOC_Os05g25450	chalkiness	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 We also demonstrated that FLR3 and FLR14 reduced grain chalkiness by alleviating heat-induced oxidative stress in rice endosperm
FLR3	Os05g0318700	LOC_Os05g25450	reactive oxygen species	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 The content of reactive oxygen species was significantly increased in flr3 and flr14 mutant endosperm but decreased in overexpression lines
FLR3	Os05g0318700	LOC_Os05g25450	stress response	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	 Transcriptome and metabolome analyses showed that genes and metabolites involved in the oxidative stress response were significantly up-regulated in flr3 and flr14 grains
FNR	Os03g0784700	LOC_Os03g57120	nitrate	The genomic organization of the gene encoding a nitrate-inducible ferredoxin-NADP+ oxidoreductase from rice roots	A genomic clone of the gene encoding a nitrate-inducible ferredoxin-NADP+ oxidoreductase (FNR) from rice (Oryza sativa L
FON1	Os06g0717200	LOC_Os06g50340	floral	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The point muta-tions, fon1-1 and fon1-2, disrupt meristem balance, resulting in alteration of floral organ numbers and the architecture of primary rachis branches
FON1	Os06g0717200	LOC_Os06g50340	shoot	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	SEM analysis showed that the shoot apical meristems of fon1-3 mutants are enlarged
FON1	Os06g0717200	LOC_Os06g50340	shoot	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size
FON1	Os06g0717200	LOC_Os06g50340	vegetative	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Although floral meristems are strongly affected by the fon1-2 mutation, vegetative and inflorescence meristems are largely normal, even in this strong allele
FON1	Os06g0717200	LOC_Os06g50340	vegetative	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	In addition, FON1 transcripts are detected in all meristems responsible for development of the aerial part of rice, suggesting that genes sharing functional redundancy with FON1 act in the vegetative and inflorescence meristems to mask the effects of the fon1 mutation
FON1	Os06g0717200	LOC_Os06g50340	vegetative	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	These results indicate that FON1 controls vegetative as well as reproductive development by regulating meristem size
FON1	Os06g0717200	LOC_Os06g50340	vegetative	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size
FON1	Os06g0717200	LOC_Os06g50340	floral organ number	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The point muta-tions, fon1-1 and fon1-2, disrupt meristem balance, resulting in alteration of floral organ numbers and the architecture of primary rachis branches
FON1	Os06g0717200	LOC_Os06g50340	meristem	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Mutations in the gene FLORAL ORGAN NUMBER1 (FON1) cause enlargement of the floral meristem in Oryza sativa (rice), resulting in an increase in the number of all floral organs
FON1	Os06g0717200	LOC_Os06g50340	meristem	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Although floral meristems are strongly affected by the fon1-2 mutation, vegetative and inflorescence meristems are largely normal, even in this strong allele
FON1	Os06g0717200	LOC_Os06g50340	meristem	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Unlike CLV1, which is predominantly expressed in the L3 layer of the shoot meristem, FON1 is expressed throughout the whole floral meristem, suggesting that small modifications to the CLV signaling pathway may be required to maintain the floral meristem in rice
FON1	Os06g0717200	LOC_Os06g50340	meristem	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	In addition, FON1 transcripts are detected in all meristems responsible for development of the aerial part of rice, suggesting that genes sharing functional redundancy with FON1 act in the vegetative and inflorescence meristems to mask the effects of the fon1 mutation
FON1	Os06g0717200	LOC_Os06g50340	reproductive	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	These results indicate that FON1 controls vegetative as well as reproductive development by regulating meristem size
FON1	Os06g0717200	LOC_Os06g50340	reproductive	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size
FON1	Os06g0717200	LOC_Os06g50340	floral	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Mutations in the gene FLORAL ORGAN NUMBER1 (FON1) cause enlargement of the floral meristem in Oryza sativa (rice), resulting in an increase in the number of all floral organs
FON1	Os06g0717200	LOC_Os06g50340	floral	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Although floral meristems are strongly affected by the fon1-2 mutation, vegetative and inflorescence meristems are largely normal, even in this strong allele
FON1	Os06g0717200	LOC_Os06g50340	floral	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Unlike CLV1, which is predominantly expressed in the L3 layer of the shoot meristem, FON1 is expressed throughout the whole floral meristem, suggesting that small modifications to the CLV signaling pathway may be required to maintain the floral meristem in rice
FON1	Os06g0717200	LOC_Os06g50340	shoot	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Unlike CLV1, which is predominantly expressed in the L3 layer of the shoot meristem, FON1 is expressed throughout the whole floral meristem, suggesting that small modifications to the CLV signaling pathway may be required to maintain the floral meristem in rice
FON1	Os06g0717200	LOC_Os06g50340	architecture	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The point muta-tions, fon1-1 and fon1-2, disrupt meristem balance, resulting in alteration of floral organ numbers and the architecture of primary rachis branches
FON1	Os06g0717200	LOC_Os06g50340	shoot apical meristem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	SEM analysis showed that the shoot apical meristems of fon1-3 mutants are enlarged
FON1	Os06g0717200	LOC_Os06g50340	shoot apical meristem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size
FON1	Os06g0717200	LOC_Os06g50340	stem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	Rice FON1, which is an ortholog of Clv1, regulates stem cell proliferation and organ initiation
FON1	Os06g0717200	LOC_Os06g50340	stem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The point muta-tions, fon1-1 and fon1-2, disrupt meristem balance, resulting in alteration of floral organ numbers and the architecture of primary rachis branches
FON1	Os06g0717200	LOC_Os06g50340	stem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	SEM analysis showed that the shoot apical meristems of fon1-3 mutants are enlarged
FON1	Os06g0717200	LOC_Os06g50340	stem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	These results indicate that FON1 controls vegetative as well as reproductive development by regulating meristem size
FON1	Os06g0717200	LOC_Os06g50340	stem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size
FON1	Os06g0717200	LOC_Os06g50340	meristem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The point muta-tions, fon1-1 and fon1-2, disrupt meristem balance, resulting in alteration of floral organ numbers and the architecture of primary rachis branches
FON1	Os06g0717200	LOC_Os06g50340	meristem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	SEM analysis showed that the shoot apical meristems of fon1-3 mutants are enlarged
FON1	Os06g0717200	LOC_Os06g50340	meristem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	These results indicate that FON1 controls vegetative as well as reproductive development by regulating meristem size
FON1	Os06g0717200	LOC_Os06g50340	meristem	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size
FON1	Os06g0717200	LOC_Os06g50340	floral meristem	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Mutations in the gene FLORAL ORGAN NUMBER1 (FON1) cause enlargement of the floral meristem in Oryza sativa (rice), resulting in an increase in the number of all floral organs
FON1	Os06g0717200	LOC_Os06g50340	floral meristem	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Although floral meristems are strongly affected by the fon1-2 mutation, vegetative and inflorescence meristems are largely normal, even in this strong allele
FON1	Os06g0717200	LOC_Os06g50340	floral meristem	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Unlike CLV1, which is predominantly expressed in the L3 layer of the shoot meristem, FON1 is expressed throughout the whole floral meristem, suggesting that small modifications to the CLV signaling pathway may be required to maintain the floral meristem in rice
FON1	Os06g0717200	LOC_Os06g50340	inflorescence	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Although floral meristems are strongly affected by the fon1-2 mutation, vegetative and inflorescence meristems are largely normal, even in this strong allele
FON1	Os06g0717200	LOC_Os06g50340	inflorescence	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	In addition, FON1 transcripts are detected in all meristems responsible for development of the aerial part of rice, suggesting that genes sharing functional redundancy with FON1 act in the vegetative and inflorescence meristems to mask the effects of the fon1 mutation
FON1	Os06g0717200	LOC_Os06g50340	floral organ number	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Mutations in the gene FLORAL ORGAN NUMBER1 (FON1) cause enlargement of the floral meristem in Oryza sativa (rice), resulting in an increase in the number of all floral organs
FON1	Os06g0717200	LOC_Os06g50340	meristem	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	FON4 transcripts mainly accumulated in the small group of cells at the apex of the SAMs, whereas the rice ortholog of CLV1 (FON1) is expressed throughout the SAMs, suggesting that the putative FON4 ligand might be sequestered as a possible mechanism for rice meristem regulation
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	flower	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Unlike FON2, which regulates the maintenance of flower and inflorescence meristems, FCP1 appears to regulate the maintenance of the vegetative SAM and RAM
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	culm	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	Likely due to enlarged SAMs, fon4 mutants produced thick culms (stems) and increased numbers of both primary rachis branches and floral organs
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	In rice (Oryza sativa), FLORAL ORGAN NUMBER2 (FON2), closely related to CLV3, is involved as a signaling molecule in a similar pathway to negatively regulate stem cell proliferation in the floral meristem (FM)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	root	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	Exogenous application of the peptides FON4p and CLV3p corresponding to the CLV3/ESR-related (CLE) motifs of FON4 and CLV3, respectively, resulted in termination of SAMs in rice, and treatment with CLV3p caused consumption of both rice and Arabidopsis root meristems, suggesting that the CLV pathway in limiting meristem size is conserved in both rice and Arabidopsis
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	root	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	However, exogenous FON4p did not have an obvious effect on limiting both rice and Arabidopsis root meristems, suggesting that the CLE motifs of Arabidopsis CLV3 and FON4 are potentially functionally divergent
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	shoot apical meristem	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	The fon4 mutants showed abnormal enlargement of the embryonic and vegetative shoot apical meristems (SAMs) and the inflorescence and floral meristems
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral organ number	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	To elucidate the genetic mechanism that regulates meristem maintenance in monocots, here we have examined the function of the gene FLORAL ORGAN NUMBER2 (FON2) in Oryza sativa (rice)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral organ number	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	To understand the molecular mechanism regulating meristem development in the monocot rice (Oryza sativa), we describe here the isolation and characterization of three floral organ number4 (fon4) alleles and the cloning of the FON4 gene
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	shoot apical meristem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Constitutive expression of FON2 also causes premature termination of the shoot apical meristem in Arabidopsis, a phenotype similar to that caused by constitutive expression of CLV3
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	flower	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Constitutive expression of FON2 causes a reduction in the number of floral organs and flowers, suggesting that both the flower and inflorescence meristems are reduced in size
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	To understand the molecular mechanism regulating meristem development in the monocot rice (Oryza sativa), we describe here the isolation and characterization of three floral organ number4 (fon4) alleles and the cloning of the FON4 gene
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	The fon4 mutants showed abnormal enlargement of the embryonic and vegetative shoot apical meristems (SAMs) and the inflorescence and floral meristems
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	FON4 transcripts mainly accumulated in the small group of cells at the apex of the SAMs, whereas the rice ortholog of CLV1 (FON1) is expressed throughout the SAMs, suggesting that the putative FON4 ligand might be sequestered as a possible mechanism for rice meristem regulation
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	Exogenous application of the peptides FON4p and CLV3p corresponding to the CLV3/ESR-related (CLE) motifs of FON4 and CLV3, respectively, resulted in termination of SAMs in rice, and treatment with CLV3p caused consumption of both rice and Arabidopsis root meristems, suggesting that the CLV pathway in limiting meristem size is conserved in both rice and Arabidopsis
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	However, exogenous FON4p did not have an obvious effect on limiting both rice and Arabidopsis root meristems, suggesting that the CLE motifs of Arabidopsis CLV3 and FON4 are potentially functionally divergent
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	vegetative	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Mutations in FON2 cause enlargement of the floral meristem, resulting in an increase in the number of floral organs, although the vegetative and inflorescence meristems are largely normal
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	shoot	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Constitutive expression of FON2 also causes premature termination of the shoot apical meristem in Arabidopsis, a phenotype similar to that caused by constitutive expression of CLV3
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	shoot	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	The fon4 mutants showed abnormal enlargement of the embryonic and vegetative shoot apical meristems (SAMs) and the inflorescence and floral meristems
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	vegetative	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	The fon4 mutants showed abnormal enlargement of the embryonic and vegetative shoot apical meristems (SAMs) and the inflorescence and floral meristems
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	vegetative	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Unlike FON2, which regulates the maintenance of flower and inflorescence meristems, FCP1 appears to regulate the maintenance of the vegetative SAM and RAM
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	In rice (Oryza sativa), FLORAL ORGAN NUMBER2 (FON2), closely related to CLV3, is involved as a signaling molecule in a similar pathway to negatively regulate stem cell proliferation in the floral meristem (FM)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	Genetic analysis revealed that FOS1 does not need FON1, the putative receptor of FON2, for its action, suggesting that FOS1 and FON2 may function in meristem maintenance as signaling molecules in independent pathways
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	inflorescence	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	The fon4 mutants showed abnormal enlargement of the embryonic and vegetative shoot apical meristems (SAMs) and the inflorescence and floral meristems
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral organ number	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Here, we report that two proteins closely related to CLAVATA3, FLORAL ORGAN NUMBER2 (FON2) and FON2-LIKE CLE PROTEIN1 (FCP1/Os CLE402), have functionally diversified to regulate the different types of meristem in rice (Oryza sativa)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral meristem	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	The fon4 mutants showed abnormal enlargement of the embryonic and vegetative shoot apical meristems (SAMs) and the inflorescence and floral meristems
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral meristem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Mutations in FON2 cause enlargement of the floral meristem, resulting in an increase in the number of floral organs, although the vegetative and inflorescence meristems are largely normal
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	inflorescence	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Unlike FON2, which regulates the maintenance of flower and inflorescence meristems, FCP1 appears to regulate the maintenance of the vegetative SAM and RAM
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	To understand the molecular mechanism regulating meristem development in the monocot rice (Oryza sativa), we describe here the isolation and characterization of three floral organ number4 (fon4) alleles and the cloning of the FON4 gene
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	The fon4 mutants showed abnormal enlargement of the embryonic and vegetative shoot apical meristems (SAMs) and the inflorescence and floral meristems
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	The floral organ number4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice	Likely due to enlarged SAMs, fon4 mutants produced thick culms (stems) and increased numbers of both primary rachis branches and floral organs
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Here, we report that two proteins closely related to CLAVATA3, FLORAL ORGAN NUMBER2 (FON2) and FON2-LIKE CLE PROTEIN1 (FCP1/Os CLE402), have functionally diversified to regulate the different types of meristem in rice (Oryza sativa)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	inflorescence	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Mutations in FON2 cause enlargement of the floral meristem, resulting in an increase in the number of floral organs, although the vegetative and inflorescence meristems are largely normal
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	inflorescence	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Constitutive expression of FON2 causes a reduction in the number of floral organs and flowers, suggesting that both the flower and inflorescence meristems are reduced in size
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	To elucidate the genetic mechanism that regulates meristem maintenance in monocots, here we have examined the function of the gene FLORAL ORGAN NUMBER2 (FON2) in Oryza sativa (rice)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Mutations in FON2 cause enlargement of the floral meristem, resulting in an increase in the number of floral organs, although the vegetative and inflorescence meristems are largely normal
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Constitutive expression of FON2 causes a reduction in the number of floral organs and flowers, suggesting that both the flower and inflorescence meristems are reduced in size
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	To elucidate the genetic mechanism that regulates meristem maintenance in monocots, here we have examined the function of the gene FLORAL ORGAN NUMBER2 (FON2) in Oryza sativa (rice)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Mutations in FON2 cause enlargement of the floral meristem, resulting in an increase in the number of floral organs, although the vegetative and inflorescence meristems are largely normal
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	FON2 transcripts are localized at the apical region in all meristems in the aerial parts of rice plants, showing an expression pattern similar to that of Arabidopsis CLV3
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Constitutive expression of FON2 causes a reduction in the number of floral organs and flowers, suggesting that both the flower and inflorescence meristems are reduced in size
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Constitutive expression of FON2 also causes premature termination of the shoot apical meristem in Arabidopsis, a phenotype similar to that caused by constitutive expression of CLV3
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Together with our previous study of FON1, these results clearly indicate that the FON1-FON2 system in rice corresponds to the CLV signaling system in Arabidopsis and suggest that the negative regulation of stem cell identity by these systems may be principally conserved in a wide range of plants within the Angiosperms
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	In addition, we propose a model of the genetic regulation of meristem maintenance in rice that includes an alternative pathway independent of FON2-FON1
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Here, we report that two proteins closely related to CLAVATA3, FLORAL ORGAN NUMBER2 (FON2) and FON2-LIKE CLE PROTEIN1 (FCP1/Os CLE402), have functionally diversified to regulate the different types of meristem in rice (Oryza sativa)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Functional diversification of CLAVATA3-related CLE proteins in meristem maintenance in rice	Unlike FON2, which regulates the maintenance of flower and inflorescence meristems, FCP1 appears to regulate the maintenance of the vegetative SAM and RAM
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral organ number	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	In rice (Oryza sativa), FLORAL ORGAN NUMBER2 (FON2), closely related to CLV3, is involved as a signaling molecule in a similar pathway to negatively regulate stem cell proliferation in the floral meristem (FM)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral organ number	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral meristem	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	In rice (Oryza sativa), FLORAL ORGAN NUMBER2 (FON2), closely related to CLV3, is involved as a signaling molecule in a similar pathway to negatively regulate stem cell proliferation in the floral meristem (FM)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral meristem	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	To elucidate the genetic mechanism that regulates meristem maintenance in monocots, here we have examined the function of the gene FLORAL ORGAN NUMBER2 (FON2) in Oryza sativa (rice)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Mutations in FON2 cause enlargement of the floral meristem, resulting in an increase in the number of floral organs, although the vegetative and inflorescence meristems are largely normal
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	FON2 transcripts are localized at the apical region in all meristems in the aerial parts of rice plants, showing an expression pattern similar to that of Arabidopsis CLV3
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Constitutive expression of FON2 causes a reduction in the number of floral organs and flowers, suggesting that both the flower and inflorescence meristems are reduced in size
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	Constitutive expression of FON2 also causes premature termination of the shoot apical meristem in Arabidopsis, a phenotype similar to that caused by constitutive expression of CLV3
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Conservation and diversification of meristem maintenance mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 gene	In addition, we propose a model of the genetic regulation of meristem maintenance in rice that includes an alternative pathway independent of FON2-FON1
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	In rice (Oryza sativa), FLORAL ORGAN NUMBER2 (FON2), closely related to CLV3, is involved as a signaling molecule in a similar pathway to negatively regulate stem cell proliferation in the floral meristem (FM)
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	Genetic analysis revealed that FOS1 does not need FON1, the putative receptor of FON2, for its action, suggesting that FOS1 and FON2 may function in meristem maintenance as signaling molecules in independent pathways
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	flower	Mapping and application of the twin-grain1 gene in rice.	The mapping results showed that TG1 is allelic to FLORAL ORGAN NUMBER2 (FON2)/FLORAL ORGAN NUMBER4 (FON4), a flower organ number gene located at 88
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	sterility	Mapping and application of the twin-grain1 gene in rice.	The novel tg1 gene allele was introgressed into the cytoplasmic male sterility (CMS) line Zhejing 22A, giving rise to a new CMS line Zhejing 22-tg1A
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	Mapping and application of the twin-grain1 gene in rice.	The mapping results showed that TG1 is allelic to FLORAL ORGAN NUMBER2 (FON2)/FLORAL ORGAN NUMBER4 (FON4), a flower organ number gene located at 88
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral organ	Mapping and application of the twin-grain1 gene in rice.	The mapping results showed that TG1 is allelic to FLORAL ORGAN NUMBER2 (FON2)/FLORAL ORGAN NUMBER4 (FON4), a flower organ number gene located at 88
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	breeding	Mapping and application of the twin-grain1 gene in rice.	The results implied great potentials for the tg1 gene in hybrid rice breeding
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral organ number	Mapping and application of the twin-grain1 gene in rice.	The mapping results showed that TG1 is allelic to FLORAL ORGAN NUMBER2 (FON2)/FLORAL ORGAN NUMBER4 (FON4), a flower organ number gene located at 88
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	male sterility	Mapping and application of the twin-grain1 gene in rice.	The novel tg1 gene allele was introgressed into the cytoplasmic male sterility (CMS) line Zhejing 22A, giving rise to a new CMS line Zhejing 22-tg1A
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	flower	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Disruption of OsMADS3 in the fon2 mutant by CRISPR-Cas9 technology caused a flower phenotype similar to that of 2B-424, confirming that the gene responsible for enhancement of fon2 was OsMADS3
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	development	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Morphological analysis showed that the fon2 and osmads3 mutations synergistically affected pistil development and FM determinacy
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	In fon2 mutants, the numbers of floral organs are increased due to an enlargement of the FM
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	To identify new factors regulating meristem maintenance in rice, we performed a genetic screening of mutants that enhanced the fon2 mutation, and found a mutant line (2B-424) in which pistil number was dramatically increased
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral organ	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	In fon2 mutants, the numbers of floral organs are increased due to an enlargement of the FM
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	spikelet	FON4 prevents the multi-floret spikelet in rice.	FON4 prevents the multi-floret spikelet in rice.
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	By contrast, the stem cell region and TAB1 expression domain were expanded in fon2, and FON2 overexpression inhibited axillary meristem formation
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	stem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	These results indicate that TAB1 is required to maintain stem cells during axillary meristem development, whereas FON2 negatively regulates stem cell fate by restricting TAB1 expression
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	By contrast, the stem cell region and TAB1 expression domain were expanded in fon2, and FON2 overexpression inhibited axillary meristem formation
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	These results indicate that TAB1 is required to maintain stem cells during axillary meristem development, whereas FON2 negatively regulates stem cell fate by restricting TAB1 expression
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	axillary meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	By contrast, the stem cell region and TAB1 expression domain were expanded in fon2, and FON2 overexpression inhibited axillary meristem formation
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	axillary meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	These results indicate that TAB1 is required to maintain stem cells during axillary meristem development, whereas FON2 negatively regulates stem cell fate by restricting TAB1 expression
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	development	Interactions between FLORAL ORGAN NUMBER4 and floral homeotic genes in regulating rice flower development.	Here, we report the genetic interactions between FON4 and floral homeotic genes OsMADS15 (an A-class gene), OsMADS16 (also called SUPERWOMAN1, SPW1, a B-class gene), OsMADS3 and OsMADS58 (C-class genes), OsMADS13 (a D-class gene), and OsMADS1 (an E-class gene) during flower development
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	flower	Interactions between FLORAL ORGAN NUMBER4 and floral homeotic genes in regulating rice flower development.	Here, we report the genetic interactions between FON4 and floral homeotic genes OsMADS15 (an A-class gene), OsMADS16 (also called SUPERWOMAN1, SPW1, a B-class gene), OsMADS3 and OsMADS58 (C-class genes), OsMADS13 (a D-class gene), and OsMADS1 (an E-class gene) during flower development
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	Interactions between FLORAL ORGAN NUMBER4 and floral homeotic genes in regulating rice flower development.	Here, we report the genetic interactions between FON4 and floral homeotic genes OsMADS15 (an A-class gene), OsMADS16 (also called SUPERWOMAN1, SPW1, a B-class gene), OsMADS3 and OsMADS58 (C-class genes), OsMADS13 (a D-class gene), and OsMADS1 (an E-class gene) during flower development
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	floral	Interactions between FLORAL ORGAN NUMBER4 and floral homeotic genes in regulating rice flower development.	This work reveals how the meristem maintenance gene FON4 genetically interacts with C, D, and E floral homeotic genes in specifying FM activity in monocot rice
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	meristem	Interactions between FLORAL ORGAN NUMBER4 and floral homeotic genes in regulating rice flower development.	This work reveals how the meristem maintenance gene FON4 genetically interacts with C, D, and E floral homeotic genes in specifying FM activity in monocot rice
FON2|FON4|TG1	Os11g0595400	LOC_Os11g38270	flower development	Interactions between FLORAL ORGAN NUMBER4 and floral homeotic genes in regulating rice flower development.	Here, we report the genetic interactions between FON4 and floral homeotic genes OsMADS15 (an A-class gene), OsMADS16 (also called SUPERWOMAN1, SPW1, a B-class gene), OsMADS3 and OsMADS58 (C-class genes), OsMADS13 (a D-class gene), and OsMADS1 (an E-class gene) during flower development
FON7	Os08g0299000	LOC_Os08g20270	floral	Identification and characterization of a novel gene controlling floral organ number in rice (Oryza sativa L.).	 Furthermore, the T-DNA-tagged line displayed the same floral organ number phenotype as the fon7 mutant
FON7	Os08g0299000	LOC_Os08g20270	floral organ	Identification and characterization of a novel gene controlling floral organ number in rice (Oryza sativa L.).	 Furthermore, the T-DNA-tagged line displayed the same floral organ number phenotype as the fon7 mutant
FON7	Os08g0299000	LOC_Os08g20270	floral organ number	Identification and characterization of a novel gene controlling floral organ number in rice (Oryza sativa L.).	 Furthermore, the T-DNA-tagged line displayed the same floral organ number phenotype as the fon7 mutant
FOS1	Os02g0324400	LOC_Os02g21890	vegetative	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	In addition, FOS1 appears to be involved in maintenance of the SAM in the vegetative phase, because constitutive expression of FOS1 caused termination of the vegetative SAM
FOS1	Os02g0324400	LOC_Os02g21890	meristem	FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice	Genetic analysis revealed that FOS1 does not need FON1, the putative receptor of FON2, for its action, suggesting that FOS1 and FON2 may function in meristem maintenance as signaling molecules in independent pathways
FSE1	Os08g0110700	LOC_Os08g01920	development	FLOURY SHRUNKEN ENDOSPERM1 connects phospholipid metabolism and amyloplast development in rice.	Additionally, the total galactolipid content in developing fse1 endosperm was significantly reduced, which may cause abnormal amyloplast development
FSE1	Os08g0110700	LOC_Os08g01920	development	FLOURY SHRUNKEN ENDOSPERM1 connects phospholipid metabolism and amyloplast development in rice.	Our results identify FSE1 as a phospholipase-like protein that controls the synthesis of galactolipids in rice endosperm, and provide a novel connection between lipid metabolism and starch synthesis in rice grains during endosperm development
FSE1	Os08g0110700	LOC_Os08g01920	starch	FLOURY SHRUNKEN ENDOSPERM1 connects phospholipid metabolism and amyloplast development in rice.	Our results identify FSE1 as a phospholipase-like protein that controls the synthesis of galactolipids in rice endosperm, and provide a novel connection between lipid metabolism and starch synthesis in rice grains during endosperm development
FSE1	Os08g0110700	LOC_Os08g01920	map-based cloning	FLOURY SHRUNKEN ENDOSPERM1 connects phospholipid metabolism and amyloplast development in rice.	Map-based cloning showed that FSE1 encodes a phospholipase-like protein homologous to phosphatidic acid-preferring phospholipase A1
FSE1	Os08g0110700	LOC_Os08g01920	endosperm	FLOURY SHRUNKEN ENDOSPERM1 connects phospholipid metabolism and amyloplast development in rice.	Additionally, the total galactolipid content in developing fse1 endosperm was significantly reduced, which may cause abnormal amyloplast development
FSE1	Os08g0110700	LOC_Os08g01920	endosperm	FLOURY SHRUNKEN ENDOSPERM1 connects phospholipid metabolism and amyloplast development in rice.	Our results identify FSE1 as a phospholipase-like protein that controls the synthesis of galactolipids in rice endosperm, and provide a novel connection between lipid metabolism and starch synthesis in rice grains during endosperm development
FSE1	Os08g0110700	LOC_Os08g01920	endosperm development	FLOURY SHRUNKEN ENDOSPERM1 connects phospholipid metabolism and amyloplast development in rice.	Our results identify FSE1 as a phospholipase-like protein that controls the synthesis of galactolipids in rice endosperm, and provide a novel connection between lipid metabolism and starch synthesis in rice grains during endosperm development
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	vegetative	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	We isolated flattened shoot meristem (fsm) mutants in rice that showed defective seedling growth and died in the vegetative phase
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	seedling	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	We isolated flattened shoot meristem (fsm) mutants in rice that showed defective seedling growth and died in the vegetative phase
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	growth	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	We isolated flattened shoot meristem (fsm) mutants in rice that showed defective seedling growth and died in the vegetative phase
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	shoot	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	We isolated flattened shoot meristem (fsm) mutants in rice that showed defective seedling growth and died in the vegetative phase
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	shoot	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	Since most fsm plants had flat and small shoot apical meristems (SAMs), we suggest that FSM is required for proper SAM maintenance
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	meristem	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	shoot	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	meristem	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	We isolated flattened shoot meristem (fsm) mutants in rice that showed defective seedling growth and died in the vegetative phase
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	meristem	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	Since most fsm plants had flat and small shoot apical meristems (SAMs), we suggest that FSM is required for proper SAM maintenance
FSM|CAF-1	Os01g0896300	LOC_Os01g67100	shoot apical meristem	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period	Since most fsm plants had flat and small shoot apical meristems (SAMs), we suggest that FSM is required for proper SAM maintenance
FTL9	Os01g0748800	LOC_Os01g54490	grain	A leaf-emanated signal orchestrates grain size and number in response to maternal resources.	 We showed that FT-like 9 (FTL9) regulates both grain size and number and that maternal photosynthetic assimilates induce FTL9 expression in leaves to act as a long-range signal that increases grain number and reduces size
FTL9	Os01g0748800	LOC_Os01g54490	grain size	A leaf-emanated signal orchestrates grain size and number in response to maternal resources.	 We showed that FT-like 9 (FTL9) regulates both grain size and number and that maternal photosynthetic assimilates induce FTL9 expression in leaves to act as a long-range signal that increases grain number and reduces size
FTL9	Os01g0748800	LOC_Os01g54490	grain number	A leaf-emanated signal orchestrates grain size and number in response to maternal resources.	 We showed that FT-like 9 (FTL9) regulates both grain size and number and that maternal photosynthetic assimilates induce FTL9 expression in leaves to act as a long-range signal that increases grain number and reduces size
FUWA	Os02g0234200	LOC_Os02g13950	shoot	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	FUWA encodes a NHL domain containing protein, with a preferential expression in meristems of root, shoot apical and inflorescence, where it restricts excessive cell division
FUWA	Os02g0234200	LOC_Os02g13950	panicle	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	We further confirm a highly conserved role of FUWA homologues in determining panicle architecture and grain development in rice, maize and sorghum through genetic transformation
FUWA	Os02g0234200	LOC_Os02g13950	panicle	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	Strikingly, knocking-down FUWA transcription level by RNA interference leads to an erect panicle and an increased grain size in both indica and japonica genetic backgrounds
FUWA	Os02g0234200	LOC_Os02g13950	grain	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	We further confirm a highly conserved role of FUWA homologues in determining panicle architecture and grain development in rice, maize and sorghum through genetic transformation
FUWA	Os02g0234200	LOC_Os02g13950	grain	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	Strikingly, knocking-down FUWA transcription level by RNA interference leads to an erect panicle and an increased grain size in both indica and japonica genetic backgrounds
FUWA	Os02g0234200	LOC_Os02g13950	domestication	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	Sequence analysis revealed that FUWA has undergone a bottleneck effect and become fixed in landraces and modern cultivars during domestication and breeding
FUWA	Os02g0234200	LOC_Os02g13950	development	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	We further confirm a highly conserved role of FUWA homologues in determining panicle architecture and grain development in rice, maize and sorghum through genetic transformation
FUWA	Os02g0234200	LOC_Os02g13950	grain size	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	Strikingly, knocking-down FUWA transcription level by RNA interference leads to an erect panicle and an increased grain size in both indica and japonica genetic backgrounds
FUWA	Os02g0234200	LOC_Os02g13950	cell division	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	FUWA encodes a NHL domain containing protein, with a preferential expression in meristems of root, shoot apical and inflorescence, where it restricts excessive cell division
FUWA	Os02g0234200	LOC_Os02g13950	architecture	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	We further confirm a highly conserved role of FUWA homologues in determining panicle architecture and grain development in rice, maize and sorghum through genetic transformation
FUWA	Os02g0234200	LOC_Os02g13950	erect	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	Strikingly, knocking-down FUWA transcription level by RNA interference leads to an erect panicle and an increased grain size in both indica and japonica genetic backgrounds
FUWA	Os02g0234200	LOC_Os02g13950	breeding	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	Sequence analysis revealed that FUWA has undergone a bottleneck effect and become fixed in landraces and modern cultivars during domestication and breeding
FUWA	Os02g0234200	LOC_Os02g13950	panicle architecture	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and weight in rice.	We further confirm a highly conserved role of FUWA homologues in determining panicle architecture and grain development in rice, maize and sorghum through genetic transformation
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The spikelet identity gene fzp'' (frizzy panicle) is required for transformation of the floral meristems to inflorescent shoots
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	In fzp mutants, spikelets are replaced by branches and spikelet meristems produce massive numbers of branch meristems
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	Many fzp mutants drastically alter panicle morphology with higher-order rachis-branches developing successively instead of the development of floral organs in these mutants
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In addition, the AP2 family genes are important for determining the degree of ramification in branch meristems, regulating the spatio-temporal expression of spikelet meristem genes, such as FRIZZY PANICLE (FZP)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	branching	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets	In the frizzy panicle (fzp) mutant of rice, the formation of florets is replaced by sequential rounds of branching
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	ethylene	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The sequence analysis of fzp-9(t) revealed that there is a single nucleotide base change upstream of the ERF (ethylene-responsive element-binding factor) domain compare to wild-type plant
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The spikelet identity gene fzp'' (frizzy panicle) is required for transformation of the floral meristems to inflorescent shoots
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The spikelet identity gene fzp'' (frizzy panicle) is required for transformation of the floral meristems to inflorescent shoots
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	The rice FRIZZY PANICLE (FZP) locus on chromosome 7, in which an ERF and acidic domain are present, is concerned with the regulation of spikelet meristem identity and the determination of panicle architecture
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	The rice FRIZZY PANICLE (FZP) locus on chromosome 7, in which an ERF and acidic domain are present, is concerned with the regulation of spikelet meristem identity and the determination of panicle architecture
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	axillary meristem	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets	The fzp mutant phenotype suggests that FZP is required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	seed	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	A new mutant showing the same fzp phenotype was induced by γ-ray irradiation of seeds of a rice cultivar “Gimbozu
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets	The fzp mutant phenotype suggests that FZP is required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	vegetative	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	In each of the normal panicle-bearing progeny plants, from occasional revertant seeds of the vegetatively-propagated mutant plant, Ds was shown to be excised from the bfl1 locus
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet meristem	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	Using a two-element Ac/Ds transposon tagging system we have isolated a rice mutant, designated branched floretless 1 (bfl1) which is defective in the transition from spikelet meristem to floret meristem
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet meristem	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	RESULTS: The bfl1 mutant shows normal differentiation of the primary rachis-branches leading to initial spikelet meristem (bract-like structure equivalent to rudimentary glumes) formation but fails to develop empty glumes and florets
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet meristem	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	CONCLUSIONS: bfl1 is a Ds-tagged rice mutant defective in the transition from spikelet meristem (SM) to floret meristem (FM)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet meristem	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	In fzp mutants, spikelets are replaced by branches and spikelet meristems produce massive numbers of branch meristems
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	seed	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	In each of the normal panicle-bearing progeny plants, from occasional revertant seeds of the vegetatively-propagated mutant plant, Ds was shown to be excised from the bfl1 locus
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral meristem	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The spikelet identity gene fzp'' (frizzy panicle) is required for transformation of the floral meristems to inflorescent shoots
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In addition, the AP2 family genes are important for determining the degree of ramification in branch meristems, regulating the spatio-temporal expression of spikelet meristem genes, such as FRIZZY PANICLE (FZP)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	transcription factor	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	BFL1 contains an EREBP/AP2 domain and is most likely an ortholog of the maize transcription factor gene BRANCHED SILKLESS1 (BD1)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	transcription factor	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	BFL1 is most probably a rice ortholog of the maize ERF (EREBP/AP2) transcription factor gene BD1
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet meristem	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	The rice FRIZZY PANICLE (FZP) locus on chromosome 7, in which an ERF and acidic domain are present, is concerned with the regulation of spikelet meristem identity and the determination of panicle architecture
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	architecture	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	The rice FRIZZY PANICLE (FZP) locus on chromosome 7, in which an ERF and acidic domain are present, is concerned with the regulation of spikelet meristem identity and the determination of panicle architecture
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	architecture	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	fzp-10 has several new characteristics, its altered nucleotide position and severity of phenotype alteration, and, therefore, could be a new gene resource to examine the function of FZP and the determination of rice panicle architecture
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	architecture	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets	The fzp mutant phenotype suggests that FZP is required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	The rice FRIZZY PANICLE (FZP) locus on chromosome 7, in which an ERF and acidic domain are present, is concerned with the regulation of spikelet meristem identity and the determination of panicle architecture
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	Many fzp mutants drastically alter panicle morphology with higher-order rachis-branches developing successively instead of the development of floral organs in these mutants
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	Examination of this fzp-like mutant for its allelism to a known allele of fzp-1, nucleotide sequence, and panicle and agronomic characteristics clearly indicated that the allele of this fzp-like mutant is located in FZP
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	The degree of higher-order branching in the panicles was significantly reduced in the fzp-10 mutant compared with that of fzp-1
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	Moreover, the fzp-10 mutant showed highly depressed culm and panicle lengths and panicle number, as well as delayed heading dates compared with its wild type and also with fzp-1
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	fzp-10 has several new characteristics, its altered nucleotide position and severity of phenotype alteration, and, therefore, could be a new gene resource to examine the function of FZP and the determination of rice panicle architecture
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	transcription factor	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets	FZP encodes an ERF transcription factor and is the rice ortholog of the maize BD1 gene
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	growth	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The fzp-9 (t) mutant showed retarded growth habit and developed fewer tillers than those of the wild- type plant
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet meristem	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets	The fzp mutant phenotype suggests that FZP is required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	anther	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	We have isolated and characterized a new fzp mutant derived from anther culture lines in rice and designated as fzp-9 (t)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral meristem	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets	The fzp mutant phenotype suggests that FZP is required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In addition, the AP2 family genes are important for determining the degree of ramification in branch meristems, regulating the spatio-temporal expression of spikelet meristem genes, such as FRIZZY PANICLE (FZP)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In addition, the AP2 family genes are important for determining the degree of ramification in branch meristems, regulating the spatio-temporal expression of spikelet meristem genes, such as FRIZZY PANICLE (FZP)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	tiller	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The fzp-9 (t) mutant showed retarded growth habit and developed fewer tillers than those of the wild- type plant
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle architecture	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	The rice FRIZZY PANICLE (FZP) locus on chromosome 7, in which an ERF and acidic domain are present, is concerned with the regulation of spikelet meristem identity and the determination of panicle architecture
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle architecture	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	fzp-10 has several new characteristics, its altered nucleotide position and severity of phenotype alteration, and, therefore, could be a new gene resource to examine the function of FZP and the determination of rice panicle architecture
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle architecture	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	In each of the normal panicle-bearing progeny plants, from occasional revertant seeds of the vegetatively-propagated mutant plant, Ds was shown to be excised from the bfl1 locus
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	Based on the similarities in mutant phenotypes bfl1 is likely to be an allele of the previously reported frizzy panicle locus
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	shoot	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The spikelet identity gene fzp'' (frizzy panicle) is required for transformation of the floral meristems to inflorescent shoots
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	Using a two-element Ac/Ds transposon tagging system we have isolated a rice mutant, designated branched floretless 1 (bfl1) which is defective in the transition from spikelet meristem to floret meristem
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	RESULTS: The bfl1 mutant shows normal differentiation of the primary rachis-branches leading to initial spikelet meristem (bract-like structure equivalent to rudimentary glumes) formation but fails to develop empty glumes and florets
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	CONCLUSIONS: bfl1 is a Ds-tagged rice mutant defective in the transition from spikelet meristem (SM) to floret meristem (FM)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets	The fzp mutant phenotype suggests that FZP is required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	culm	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	Moreover, the fzp-10 mutant showed highly depressed culm and panicle lengths and panicle number, as well as delayed heading dates compared with its wild type and also with fzp-1
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets	In the frizzy panicle (fzp) mutant of rice, the formation of florets is replaced by sequential rounds of branching
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	branching	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	The degree of higher-order branching in the panicles was significantly reduced in the fzp-10 mutant compared with that of fzp-1
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	Using a two-element Ac/Ds transposon tagging system we have isolated a rice mutant, designated branched floretless 1 (bfl1) which is defective in the transition from spikelet meristem to floret meristem
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	RESULTS: The bfl1 mutant shows normal differentiation of the primary rachis-branches leading to initial spikelet meristem (bract-like structure equivalent to rudimentary glumes) formation but fails to develop empty glumes and florets
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	CONCLUSIONS: bfl1 is a Ds-tagged rice mutant defective in the transition from spikelet meristem (SM) to floret meristem (FM)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The spikelet identity gene fzp'' (frizzy panicle) is required for transformation of the floral meristems to inflorescent shoots
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	In fzp mutants, spikelets are replaced by branches and spikelet meristems produce massive numbers of branch meristems
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Morphological and molecular characterization of a new frizzy panicle mutant, fzp-9(t), in rice (Oryza sativa L.)	The primary and secondary rachis branches of fzp-9 (t) appeared to be normal, but higher-order branches formed continuous bract- like structures without developing spikelets
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	heading date	A novel frameshift mutant allele, fzp-10, affecting the panicle architecture of rice	Moreover, the fzp-10 mutant showed highly depressed culm and panicle lengths and panicle number, as well as delayed heading dates compared with its wild type and also with fzp-1
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelet	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	vegetative	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	meristem	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	reproductive	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral meristem	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	branching	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	branching	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	floral organ	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	organ identity	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	axillary meristem	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Duplication of an upstream silencer of FZP increases grain yield in rice.	 The CNV-18bp duplication repressed FZP expression, prolonged the panicle branching period and increased grain yield by more than 15% through substantially increasing the number of spikelets per panicle (SPP) and slightly decreasing the 1,000-grain weight (TGW)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain	Duplication of an upstream silencer of FZP increases grain yield in rice.	Duplication of an upstream silencer of FZP increases grain yield in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain	Duplication of an upstream silencer of FZP increases grain yield in rice.	 The CNV-18bp duplication repressed FZP expression, prolonged the panicle branching period and increased grain yield by more than 15% through substantially increasing the number of spikelets per panicle (SPP) and slightly decreasing the 1,000-grain weight (TGW)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain yield	Duplication of an upstream silencer of FZP increases grain yield in rice.	Duplication of an upstream silencer of FZP increases grain yield in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain yield	Duplication of an upstream silencer of FZP increases grain yield in rice.	 The CNV-18bp duplication repressed FZP expression, prolonged the panicle branching period and increased grain yield by more than 15% through substantially increasing the number of spikelets per panicle (SPP) and slightly decreasing the 1,000-grain weight (TGW)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	yield	Duplication of an upstream silencer of FZP increases grain yield in rice.	Duplication of an upstream silencer of FZP increases grain yield in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	yield	Duplication of an upstream silencer of FZP increases grain yield in rice.	 The CNV-18bp duplication repressed FZP expression, prolonged the panicle branching period and increased grain yield by more than 15% through substantially increasing the number of spikelets per panicle (SPP) and slightly decreasing the 1,000-grain weight (TGW)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	yield	Duplication of an upstream silencer of FZP increases grain yield in rice.	 These findings showed that the silencer CNVs coordinate a trade-off between SPP and TGW by fine-tuning FZP expression, and balancing the trade-off could enhance yield potential
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	branching	Duplication of an upstream silencer of FZP increases grain yield in rice.	 The CNV-18bp duplication repressed FZP expression, prolonged the panicle branching period and increased grain yield by more than 15% through substantially increasing the number of spikelets per panicle (SPP) and slightly decreasing the 1,000-grain weight (TGW)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain weight	Duplication of an upstream silencer of FZP increases grain yield in rice.	 The CNV-18bp duplication repressed FZP expression, prolonged the panicle branching period and increased grain yield by more than 15% through substantially increasing the number of spikelets per panicle (SPP) and slightly decreasing the 1,000-grain weight (TGW)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	axillary meristem	Duplication of an upstream silencer of FZP increases grain yield in rice.	 SGDP7 is identical to FZP (FRIZZY PANICLE), which represses the formation of axillary meristems
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	spikelets per panicle	Duplication of an upstream silencer of FZP increases grain yield in rice.	 The CNV-18bp duplication repressed FZP expression, prolonged the panicle branching period and increased grain yield by more than 15% through substantially increasing the number of spikelets per panicle (SPP) and slightly decreasing the 1,000-grain weight (TGW)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain	FZP determines grain size and sterile lemma fate in rice.	FZP determines grain size and sterile lemma fate in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain	FZP determines grain size and sterile lemma fate in rice.	 In the study, FZP encodes an ERF domain protein, and functions in grain size and sterile lemma identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain	FZP determines grain size and sterile lemma fate in rice.	 Our results revealed that FZP plays a vital role in the regulation of grain size, and first provides clear evidence in support of the hypothesis that the lemma, rudimentary glume, and sterile lemma are homologous organs
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain size	FZP determines grain size and sterile lemma fate in rice.	FZP determines grain size and sterile lemma fate in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain size	FZP determines grain size and sterile lemma fate in rice.	 In the study, FZP encodes an ERF domain protein, and functions in grain size and sterile lemma identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain size	FZP determines grain size and sterile lemma fate in rice.	 Our results revealed that FZP plays a vital role in the regulation of grain size, and first provides clear evidence in support of the hypothesis that the lemma, rudimentary glume, and sterile lemma are homologous organs
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	lemma	FZP determines grain size and sterile lemma fate in rice.	FZP determines grain size and sterile lemma fate in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	lemma	FZP determines grain size and sterile lemma fate in rice.	 In the study, FZP encodes an ERF domain protein, and functions in grain size and sterile lemma identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	lemma	FZP determines grain size and sterile lemma fate in rice.	 Interestingly, the sterile lemma underwent a homeotic transformation into a rudimentary glume in the fzp-12 and fzp-13 mutants, whereas the sterile lemma underwent a homeotic transformation into a lemma in FZP over-expressing plants, suggesting that FZP specifically determines the sterile lemma identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	lemma	FZP determines grain size and sterile lemma fate in rice.	 Our results revealed that FZP plays a vital role in the regulation of grain size, and first provides clear evidence in support of the hypothesis that the lemma, rudimentary glume, and sterile lemma are homologous organs
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	sterile	FZP determines grain size and sterile lemma fate in rice.	FZP determines grain size and sterile lemma fate in rice.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	sterile	FZP determines grain size and sterile lemma fate in rice.	 In the study, FZP encodes an ERF domain protein, and functions in grain size and sterile lemma identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	sterile	FZP determines grain size and sterile lemma fate in rice.	 Mutation of FZP causes smaller grains and degenerated sterile lemmas
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	sterile	FZP determines grain size and sterile lemma fate in rice.	 Interestingly, the sterile lemma underwent a homeotic transformation into a rudimentary glume in the fzp-12 and fzp-13 mutants, whereas the sterile lemma underwent a homeotic transformation into a lemma in FZP over-expressing plants, suggesting that FZP specifically determines the sterile lemma identity
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	sterile	FZP determines grain size and sterile lemma fate in rice.	 Our results revealed that FZP plays a vital role in the regulation of grain size, and first provides clear evidence in support of the hypothesis that the lemma, rudimentary glume, and sterile lemma are homologous organs
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	leaf	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	 Functional analyses showed that NARROW LEAF 1 (NAL1), a trypsin-like serine and cysteine protease, interacted with FZP and promoted FZP degradation
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	7-kb upstream of FZP may affect the binding activities of Auxin Response Factors (OsARFs) to the FZP promoter, decrease FZP expression level, and significantly enhance secondary branch number and grain yields in cultivated rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	 Consistently, down-regulating FZP expression or up-regulating NAL1 expression in commercial cultivar Zhonghua 17 increased secondary branches per panicle, grain number per panicle, and grain yield per plant
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain number	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	 Consistently, down-regulating FZP expression or up-regulating NAL1 expression in commercial cultivar Zhonghua 17 increased secondary branches per panicle, grain number per panicle, and grain yield per plant
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain yield	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain yield	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	7-kb upstream of FZP may affect the binding activities of Auxin Response Factors (OsARFs) to the FZP promoter, decrease FZP expression level, and significantly enhance secondary branch number and grain yields in cultivated rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain yield	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	 Consistently, down-regulating FZP expression or up-regulating NAL1 expression in commercial cultivar Zhonghua 17 increased secondary branches per panicle, grain number per panicle, and grain yield per plant
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	yield	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	yield	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	 Consistently, down-regulating FZP expression or up-regulating NAL1 expression in commercial cultivar Zhonghua 17 increased secondary branches per panicle, grain number per panicle, and grain yield per plant
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	auxin	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	7-kb upstream of FZP may affect the binding activities of Auxin Response Factors (OsARFs) to the FZP promoter, decrease FZP expression level, and significantly enhance secondary branch number and grain yields in cultivated rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	inflorescence	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	auxin response	Variation in FZP regulatory region causes increases of inflorescence secondary branches and grain yield in rice domestication.	7-kb upstream of FZP may affect the binding activities of Auxin Response Factors (OsARFs) to the FZP promoter, decrease FZP expression level, and significantly enhance secondary branch number and grain yields in cultivated rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain	Comprehensive panicle phenotyping reveals that qSrn7/FZP influences higher-order branching.	 Reduced expression of FZP in the reproductive stage increases the extent of higher order branching of the panicle, resulting in increased grain number
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	grain number	Comprehensive panicle phenotyping reveals that qSrn7/FZP influences higher-order branching.	 Reduced expression of FZP in the reproductive stage increases the extent of higher order branching of the panicle, resulting in increased grain number
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	reproductive	Comprehensive panicle phenotyping reveals that qSrn7/FZP influences higher-order branching.	 Reduced expression of FZP in the reproductive stage increases the extent of higher order branching of the panicle, resulting in increased grain number
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	branching	Comprehensive panicle phenotyping reveals that qSrn7/FZP influences higher-order branching.	 Reduced expression of FZP in the reproductive stage increases the extent of higher order branching of the panicle, resulting in increased grain number
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	development	Panicle Apical Abortion 7 Regulates Panicle Development in Rice (Oryza sativa L.).	 These findings suggest that PAA7 regulates the development of apical spikelets and interacts with LAX2 to regulate panicle development in rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Panicle Apical Abortion 7 Regulates Panicle Development in Rice (Oryza sativa L.).	 Moreover, the severe damage for panicle phenotype in paa7/lax2 double mutant indicated that PAA7 could crosstalk with Lax Panicle 2 (LAX2)
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle	Panicle Apical Abortion 7 Regulates Panicle Development in Rice (Oryza sativa L.).	 These findings suggest that PAA7 regulates the development of apical spikelets and interacts with LAX2 to regulate panicle development in rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	map-based cloning	Panicle Apical Abortion 7 Regulates Panicle Development in Rice (Oryza sativa L.).	 Map-based cloning revealed that the 3 bp &quot;AGC&quot; insertion and 4 bp &quot;TCTC&quot; deletion mutation of paa7 were located in the 3&#x27;-UTR regions of LOC_Os07g47330, which was confirmed through complementary assays and overexpressed lines
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	cell death	Panicle Apical Abortion 7 Regulates Panicle Development in Rice (Oryza sativa L.).	 High accumulations of H(2)O(2) in paa7 caused programmed cell death (PCD) accompanied by nuclear DNA fragmentation in the apical spikelets
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	panicle development	Panicle Apical Abortion 7 Regulates Panicle Development in Rice (Oryza sativa L.).	 These findings suggest that PAA7 regulates the development of apical spikelets and interacts with LAX2 to regulate panicle development in rice
FZP|BFL1|SGDP7|PAA7	Os07g0669500	LOC_Os07g47330	programmed cell death	Panicle Apical Abortion 7 Regulates Panicle Development in Rice (Oryza sativa L.).	 High accumulations of H(2)O(2) in paa7 caused programmed cell death (PCD) accompanied by nuclear DNA fragmentation in the apical spikelets
G1	Os07g0139300	LOC_Os07g04670	sterile	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	Here, we have examined a long sterile lemma1 (g1) mutant, in which the sterile lemma is enlarged like the lemma
G1	Os07g0139300	LOC_Os07g04670	sterile	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	Detailed phenotypic analysis reveals that the large sterile lemma in the g1 mutant appears to be caused by homeotic transformation of the sterile lemma into a lemma, suggesting that G1 is involved in the repression of lemma identity to specify the sterile lemma
G1	Os07g0139300	LOC_Os07g04670	sterile	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	G1 mRNA is expressed in sterile lemma primordia throughout their development, and G1 protein is localized in the nucleus
G1	Os07g0139300	LOC_Os07g04670	sterile	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	We also show that a wild rice species, Oryza grandiglumis, that forms large sterile lemmas has serious mutations in the G1 gene
G1	Os07g0139300	LOC_Os07g04670	sterile	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet
G1	Os07g0139300	LOC_Os07g04670	lemma	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	Here, we have examined a long sterile lemma1 (g1) mutant, in which the sterile lemma is enlarged like the lemma
G1	Os07g0139300	LOC_Os07g04670	lemma	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	Detailed phenotypic analysis reveals that the large sterile lemma in the g1 mutant appears to be caused by homeotic transformation of the sterile lemma into a lemma, suggesting that G1 is involved in the repression of lemma identity to specify the sterile lemma
G1	Os07g0139300	LOC_Os07g04670	lemma	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	G1 mRNA is expressed in sterile lemma primordia throughout their development, and G1 protein is localized in the nucleus
G1	Os07g0139300	LOC_Os07g04670	lemma	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	Repression of lemma identity by G1 is consistent with a hypothesis proposed to explain the morphological evolution of rice spikelets
G1	Os07g0139300	LOC_Os07g04670	lemma	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	We also show that a wild rice species, Oryza grandiglumis, that forms large sterile lemmas has serious mutations in the G1 gene
G1	Os07g0139300	LOC_Os07g04670	lemma	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet
G1	Os07g0139300	LOC_Os07g04670	spikelet	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	Repression of lemma identity by G1 is consistent with a hypothesis proposed to explain the morphological evolution of rice spikelets
G1	Os07g0139300	LOC_Os07g04670	spikelet	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet
G1	Os07g0139300	LOC_Os07g04670	flower	G1/ELE Functions in the Development of Rice Lemmas in Addition to Determining Identities of Empty Glumes.	Generally, our findings provided valuable information for better understanding functions of G1 and OsLHS1 in flower development and identities of empty glumes
G1	Os07g0139300	LOC_Os07g04670	development	G1/ELE Functions in the Development of Rice Lemmas in Addition to Determining Identities of Empty Glumes.	Generally, our findings provided valuable information for better understanding functions of G1 and OsLHS1 in flower development and identities of empty glumes
G1	Os07g0139300	LOC_Os07g04670	flower development	G1/ELE Functions in the Development of Rice Lemmas in Addition to Determining Identities of Empty Glumes.	Generally, our findings provided valuable information for better understanding functions of G1 and OsLHS1 in flower development and identities of empty glumes
GA20OX4	Os05g0421900	LOC_Os05g34854	gibberellin	Cryptochrome and phytochrome cooperatively but independently reduce active gibberellin content in rice seedlings under light irradiation	In this study, we found that a blue light signal triggers reduction of active gibberellin content in rice seedlings with simultaneous repression of two gibberellin 20-oxidase genes (OsGA20ox2 and OsGA20ox4) and acute induction of four gibberellin 2-oxidase genes (OsGA2ox4-OsGA2ox7)
GA20OX4	Os05g0421900	LOC_Os05g34854	ga	Differences and similarities in the photoregulation of gibberellin metabolism between rice and dicots	In parallel, phytochrome B with auxiliary action of phytochrome A mediates repression of GA 20-oxidase genes (OsGA20ox2 and OsGA20ox4)
GA20OX4	Os05g0421900	LOC_Os05g34854	seedling	Cryptochrome and phytochrome cooperatively but independently reduce active gibberellin content in rice seedlings under light irradiation	In this study, we found that a blue light signal triggers reduction of active gibberellin content in rice seedlings with simultaneous repression of two gibberellin 20-oxidase genes (OsGA20ox2 and OsGA20ox4) and acute induction of four gibberellin 2-oxidase genes (OsGA2ox4-OsGA2ox7)
GA2OX3|OsGA2OX3	Os01g0757200	LOC_Os01g55240	GA inactivation	Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in rice	When excessive active BR is applied, the hormone mostly induces GA inactivation through upregulation of the GA inactivation gene GA2ox-3 and also represses BR biosynthesis, resulting in decreased hormone levels and growth inhibition.
GA2OX3|OsGA2OX3	Os01g0757200	LOC_Os01g55240	root	Orchestration of ethylene and gibberellin signals determines primary root elongation in rice.	 Mutation in OsGA2ox3 weakened ethylene-induced GA inactivation and reduced the ethylene sensitivity of the root
GA2OX3|OsGA2OX3	Os01g0757200	LOC_Os01g55240	ethylene	Orchestration of ethylene and gibberellin signals determines primary root elongation in rice.	 Mutation in OsGA2ox3 weakened ethylene-induced GA inactivation and reduced the ethylene sensitivity of the root
GA2OX3|OsGA2OX3	Os01g0757200	LOC_Os01g55240	ga	Orchestration of ethylene and gibberellin signals determines primary root elongation in rice.	 Mutation in OsGA2ox3 weakened ethylene-induced GA inactivation and reduced the ethylene sensitivity of the root
GA2OX3|OsGA2OX3	Os01g0757200	LOC_Os01g55240	GA	Orchestration of ethylene and gibberellin signals determines primary root elongation in rice.	 Mutation in OsGA2ox3 weakened ethylene-induced GA inactivation and reduced the ethylene sensitivity of the root
GA2OX3|OsGA2OX3	Os01g0757200	LOC_Os01g55240	 ga 	Orchestration of ethylene and gibberellin signals determines primary root elongation in rice.	 Mutation in OsGA2ox3 weakened ethylene-induced GA inactivation and reduced the ethylene sensitivity of the root
GA2OX3|OsGA2OX3	Os01g0757200	LOC_Os01g55240	GA inactivation	Orchestration of ethylene and gibberellin signals determines primary root elongation in rice.	 Mutation in OsGA2ox3 weakened ethylene-induced GA inactivation and reduced the ethylene sensitivity of the root
GADPH|OsGAPB	Os03g0129300	LOC_Os03g03720	transcription factor	A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes	Transient expression of the GFP-tagged light-related transcription factor OsGLK1 markedly upregulated transcript levels of the endogeneous photosynthetic genes OsLhcb1, OsLhcp, GADPH and RbcS, which were reduced to some extent by NF treatment in the rice green tissue protoplasts
GADPH|OsGAPB	Os03g0129300	LOC_Os03g03720	photosynthesis	Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance.	CONCLUSION: Our results revealed that low light stress on vegetative stage of rice inhibits photosynthesis possibly by decreasing the photosynthetic proteins and OsGAPB gene is a good candidate for manipulating rice tolerance to low light stress
GADPH|OsGAPB	Os03g0129300	LOC_Os03g03720	tolerance	Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance.	CONCLUSION: Our results revealed that low light stress on vegetative stage of rice inhibits photosynthesis possibly by decreasing the photosynthetic proteins and OsGAPB gene is a good candidate for manipulating rice tolerance to low light stress
GADPH|OsGAPB	Os03g0129300	LOC_Os03g03720	vegetative	Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance.	CONCLUSION: Our results revealed that low light stress on vegetative stage of rice inhibits photosynthesis possibly by decreasing the photosynthetic proteins and OsGAPB gene is a good candidate for manipulating rice tolerance to low light stress
GADPH|OsGAPB	Os03g0129300	LOC_Os03g03720	stress	Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance.	Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance.
GADPH|OsGAPB	Os03g0129300	LOC_Os03g03720	stress	Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance.	CONCLUSION: Our results revealed that low light stress on vegetative stage of rice inhibits photosynthesis possibly by decreasing the photosynthetic proteins and OsGAPB gene is a good candidate for manipulating rice tolerance to low light stress
GADPH|OsGAPB	Os03g0129300	LOC_Os03g03720	stress tolerance	Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance.	Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance.
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	starch	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	In addition, expression of GD1 was induced under sugar treatment, and the contents of starch and soluble sugar are altered in the gd1 mutant
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	flower	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	In addition to the severe germination defect, the gd1 mutant also shows a dwarf phenotype and abnormal flower development
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	homeostasis	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	These data indicate that GD1 participates directly or indirectly in regulating GA and carbohydrate homeostasis, and further regulates rice seed germination and seedling development
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	seedling	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	These data indicate that GD1 participates directly or indirectly in regulating GA and carbohydrate homeostasis, and further regulates rice seed germination and seedling development
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	seed	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	To understand seed development and seed germination in cereals, a large-scale screen was performed using our T-DNA mutant population, and a mutant germination-defective1 (gd1) was identified
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	seed	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Furthermore, GD1 binds to the promoter of OsLFL1, a LEC2/FUS3-like gene of rice, via an RY element, leading to significant up-regulation of OsLFL1 and a large subset of seed maturation genes in the gd1 mutant
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	seed	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	These data indicate that GD1 participates directly or indirectly in regulating GA and carbohydrate homeostasis, and further regulates rice seed germination and seedling development
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	seed germination	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	To understand seed development and seed germination in cereals, a large-scale screen was performed using our T-DNA mutant population, and a mutant germination-defective1 (gd1) was identified
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	seed germination	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	These data indicate that GD1 participates directly or indirectly in regulating GA and carbohydrate homeostasis, and further regulates rice seed germination and seedling development
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	dwarf	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	In addition to the severe germination defect, the gd1 mutant also shows a dwarf phenotype and abnormal flower development
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	dwarf	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Consistent with the dwarf phenotype of gd1, expression of the gibberelic acid (GA) inactivation gene OsGA2ox3 is increased dramatically, accompanied by reduced expression of GA biosynthetic genes including OsGA20ox1, OsGA20ox2 and OsGA3ox2 in gd1, resulting in a decreased endogenous GA(4) level
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	dwarf	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Exogenous application of GA not only induced GD1 expression, but also partially rescued the dwarf phenotype of gd1
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	ga	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Consistent with the dwarf phenotype of gd1, expression of the gibberelic acid (GA) inactivation gene OsGA2ox3 is increased dramatically, accompanied by reduced expression of GA biosynthetic genes including OsGA20ox1, OsGA20ox2 and OsGA3ox2 in gd1, resulting in a decreased endogenous GA(4) level
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	ga	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Exogenous application of GA not only induced GD1 expression, but also partially rescued the dwarf phenotype of gd1
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	ga	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	These data indicate that GD1 participates directly or indirectly in regulating GA and carbohydrate homeostasis, and further regulates rice seed germination and seedling development
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	seed development	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	To understand seed development and seed germination in cereals, a large-scale screen was performed using our T-DNA mutant population, and a mutant germination-defective1 (gd1) was identified
GD1	Os07g0563300|Os07g0563350	LOC_Os07g37610	transcription factor	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Molecular and biochemical analyses revealed that GD1 encodes a B3 domain-containing transcription factor with repression activity
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain yield	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Overexpression of GE promoted cell proliferation and enhanced rice plant growth and grain yield, but reduced embryo size, suggesting that GE is critical for coordinating rice embryo and endosperm development
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Overexpression of GE promoted cell proliferation and enhanced rice plant growth and grain yield, but reduced embryo size, suggesting that GE is critical for coordinating rice embryo and endosperm development
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	cell death	GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice	The function of GE in each tissue is distinct, controlling cell size in the embryo and cell death in the endosperm
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	shoot	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Post-embryonic growth of ge seedling was severely inhibited due to defective shoot apical meristem (SAM) maintenance
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	meristem	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Post-embryonic growth of ge seedling was severely inhibited due to defective shoot apical meristem (SAM) maintenance
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	endosperm	GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice	The function of GE in each tissue is distinct, controlling cell size in the embryo and cell death in the endosperm
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	endosperm	GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice	GE, which encodes CYP78A13, is predominantly expressed in the interfacing tissues of the both embryo and endosperm
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	endosperm	GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice	In contrast to the loss-of-function mutant with large embryo and small endosperm, GE overexpression causes a small embryo and enlarged endosperm
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	endosperm	GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice	A complementation analysis coupled with heterofertilization showed that complementation of ge mutation in either embryo or endosperm failed to restore the wild-type embryo/endosperm ratio
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	endosperm	GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice	Among genes associated with embryo/endosperm size, REDUCED EMBRYO genes, whose loss-of-function causes a phenotype opposite to ge, are revealed to regulate endosperm size upstream of GE
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	endosperm	GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice	To fully understand the embryo-endosperm size control, the genetic network of the related genes should be elucidated
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	yield	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Overexpression of GE promoted cell proliferation and enhanced rice plant growth and grain yield, but reduced embryo size, suggesting that GE is critical for coordinating rice embryo and endosperm development
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	endosperm	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	However, the molecular mechanism(s) underlying embryo and endosperm development remains largely unknown, particularly in rice, the model cereal
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	endosperm	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	GE is expressed predominantly in the scutellar epithelium, the interface region between embryo and endosperm
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	endosperm	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Overexpression of GE promoted cell proliferation and enhanced rice plant growth and grain yield, but reduced embryo size, suggesting that GE is critical for coordinating rice embryo and endosperm development
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	seed	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Mutation of GE resulted in a large embryo in the seed, which was caused by excessive expansion of scutellum cells
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	seed	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Post-embryonic growth of ge seedling was severely inhibited due to defective shoot apical meristem (SAM) maintenance
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	seed	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Moreover, transgenic Arabidopsis plants overexpressing AtCYP78A10, a GE homolog, also produced bigger seeds, implying a conserved role for the CYP78A subfamily of P450s in regulating seed development
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	seed development	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Moreover, transgenic Arabidopsis plants overexpressing AtCYP78A10, a GE homolog, also produced bigger seeds, implying a conserved role for the CYP78A subfamily of P450s in regulating seed development
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	shoot apical meristem	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Post-embryonic growth of ge seedling was severely inhibited due to defective shoot apical meristem (SAM) maintenance
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	growth	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Post-embryonic growth of ge seedling was severely inhibited due to defective shoot apical meristem (SAM) maintenance
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	growth	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Overexpression of GE promoted cell proliferation and enhanced rice plant growth and grain yield, but reduced embryo size, suggesting that GE is critical for coordinating rice embryo and endosperm development
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	seedling	Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450	Post-embryonic growth of ge seedling was severely inhibited due to defective shoot apical meristem (SAM) maintenance
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	growth	Variations in CYP78A13 coding region influence grain size and yield in rice.	2 showed that both can promote grain growth
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain	Variations in CYP78A13 coding region influence grain size and yield in rice.	Variations in CYP78A13 coding region influence grain size and yield in rice.
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain	Variations in CYP78A13 coding region influence grain size and yield in rice.	Grain size is one of the most important determinants of crop yield in cereals
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain	Variations in CYP78A13 coding region influence grain size and yield in rice.	Here, we identified a dominant mutant, big grain2 (bg2-D) from our enhancer-trapping population
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain	Variations in CYP78A13 coding region influence grain size and yield in rice.	Sequence search revealed that CYP78A13 has a paralogue Grain<U+2005>Length 3
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain	Variations in CYP78A13 coding region influence grain size and yield in rice.	2 showed that both can promote grain growth
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain	Variations in CYP78A13 coding region influence grain size and yield in rice.	Detailed examination of the transgenic plants with chimaeric constructs suggested that variation in CYP78A13 coding region is responsible for the variation of grain yield
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain	Variations in CYP78A13 coding region influence grain size and yield in rice.	Taken together, our results suggest that the variations in CYP78A13 in the indica varieties hold potential in rice breeding for application of grain yield improvement
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain yield	Variations in CYP78A13 coding region influence grain size and yield in rice.	Detailed examination of the transgenic plants with chimaeric constructs suggested that variation in CYP78A13 coding region is responsible for the variation of grain yield
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain yield	Variations in CYP78A13 coding region influence grain size and yield in rice.	Taken together, our results suggest that the variations in CYP78A13 in the indica varieties hold potential in rice breeding for application of grain yield improvement
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	yield	Variations in CYP78A13 coding region influence grain size and yield in rice.	Variations in CYP78A13 coding region influence grain size and yield in rice.
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	yield	Variations in CYP78A13 coding region influence grain size and yield in rice.	Grain size is one of the most important determinants of crop yield in cereals
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	yield	Variations in CYP78A13 coding region influence grain size and yield in rice.	Detailed examination of the transgenic plants with chimaeric constructs suggested that variation in CYP78A13 coding region is responsible for the variation of grain yield
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	yield	Variations in CYP78A13 coding region influence grain size and yield in rice.	Taken together, our results suggest that the variations in CYP78A13 in the indica varieties hold potential in rice breeding for application of grain yield improvement
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain size	Variations in CYP78A13 coding region influence grain size and yield in rice.	Variations in CYP78A13 coding region influence grain size and yield in rice.
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	grain size	Variations in CYP78A13 coding region influence grain size and yield in rice.	Grain size is one of the most important determinants of crop yield in cereals
GE|CYP78A13	Os07g0603700	LOC_Os07g41240	breeding	Variations in CYP78A13 coding region influence grain size and yield in rice.	Taken together, our results suggest that the variations in CYP78A13 in the indica varieties hold potential in rice breeding for application of grain yield improvement
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	leaf	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	resistance	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	panicle	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	blast	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	blast resistance	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.	OsGF14b Positively Regulates Panicle Blast Resistance, but Negatively Regulates Leaf Blast Resistance in Rice.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	leaf	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Previous research demonstrated that OsGF14b plays different roles in panicle and leaf blast resistance
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	growth	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Furthermore, mutation and overexpression of OsGF14b affected the expression of stress-related genes under normal growth conditions and/or drought stress conditions
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	resistance	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	resistance	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Previous research demonstrated that OsGF14b plays different roles in panicle and leaf blast resistance
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	resistance	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 In this study, we researched the function of OsGF14b in drought resistance in rice
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	resistance	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 In comparison with wild type (WT), the osgf14b mutant exhibited improved resistance to drought and osmotic stress by changing the content of stress-relevant parameters, complementation of the osgf14b mutant restored the drought sensitivity to WT levels, whereas the OsGF14b-overexpression lines exhibited enhanced sensitivity to drought and osmotic stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	resistance	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	We have demonstrated that OsGF14b is involved in the drought resistance of rice plants, partially in an ABA-dependent manner
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	panicle	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Previous research demonstrated that OsGF14b plays different roles in panicle and leaf blast resistance
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 In this study, we researched the function of OsGF14b in drought resistance in rice
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	Here, we report that OsGF14b was strongly induced by soil drought stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 In comparison with wild type (WT), the osgf14b mutant exhibited improved resistance to drought and osmotic stress by changing the content of stress-relevant parameters, complementation of the osgf14b mutant restored the drought sensitivity to WT levels, whereas the OsGF14b-overexpression lines exhibited enhanced sensitivity to drought and osmotic stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Furthermore, mutation and overexpression of OsGF14b affected the expression of stress-related genes under normal growth conditions and/or drought stress conditions
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	We have demonstrated that OsGF14b is involved in the drought resistance of rice plants, partially in an ABA-dependent manner
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	blast	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Previous research demonstrated that OsGF14b plays different roles in panicle and leaf blast resistance
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	stress	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	Here, we report that OsGF14b was strongly induced by soil drought stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	stress	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 In comparison with wild type (WT), the osgf14b mutant exhibited improved resistance to drought and osmotic stress by changing the content of stress-relevant parameters, complementation of the osgf14b mutant restored the drought sensitivity to WT levels, whereas the OsGF14b-overexpression lines exhibited enhanced sensitivity to drought and osmotic stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	stress	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Furthermore, mutation and overexpression of OsGF14b affected the expression of stress-related genes under normal growth conditions and/or drought stress conditions
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	abscisic acid	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 The osgf14b mutant plants were hypersensitive to abscisic acid (ABA), while the OsGF14b-overexpression plants showed reduced sensitivity to ABA
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	ABA	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 The osgf14b mutant plants were hypersensitive to abscisic acid (ABA), while the OsGF14b-overexpression plants showed reduced sensitivity to ABA
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought stress	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	Here, we report that OsGF14b was strongly induced by soil drought stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought stress	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Furthermore, mutation and overexpression of OsGF14b affected the expression of stress-related genes under normal growth conditions and/or drought stress conditions
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought resistance	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought resistance	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 In this study, we researched the function of OsGF14b in drought resistance in rice
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought resistance	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	We have demonstrated that OsGF14b is involved in the drought resistance of rice plants, partially in an ABA-dependent manner
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought sensitivity	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 In comparison with wild type (WT), the osgf14b mutant exhibited improved resistance to drought and osmotic stress by changing the content of stress-relevant parameters, complementation of the osgf14b mutant restored the drought sensitivity to WT levels, whereas the OsGF14b-overexpression lines exhibited enhanced sensitivity to drought and osmotic stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	blast resistance	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Previous research demonstrated that OsGF14b plays different roles in panicle and leaf blast resistance
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	drought stress 	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	 Furthermore, mutation and overexpression of OsGF14b affected the expression of stress-related genes under normal growth conditions and/or drought stress conditions
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	root	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	root	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	 Moreover, the overexpression of OsGF14b in WYJ8 (carrying the qpe9-1 allele) partially increased primary root length under LP conditions
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	root	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	 These results suggest that the G protein �� subunit qPE9-1 in rice plants modulates root elongation for phosphorus uptake by involving the 14-3-3 protein OsGF14b and PM H+ -ATPase, which is required for rice P use
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	root elongation	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	root elongation	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	 These results suggest that the G protein �� subunit qPE9-1 in rice plants modulates root elongation for phosphorus uptake by involving the 14-3-3 protein OsGF14b and PM H+ -ATPase, which is required for rice P use
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	plasma membrane	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	primary root	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	 Moreover, the overexpression of OsGF14b in WYJ8 (carrying the qpe9-1 allele) partially increased primary root length under LP conditions
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	phosphorus	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	phosphorus	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	 These results suggest that the G protein �� subunit qPE9-1 in rice plants modulates root elongation for phosphorus uptake by involving the 14-3-3 protein OsGF14b and PM H+ -ATPase, which is required for rice P use
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	root length	Rice G protein �� subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H + -ATPase	 Moreover, the overexpression of OsGF14b in WYJ8 (carrying the qpe9-1 allele) partially increased primary root length under LP conditions
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	development	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	 The serine acids (Ser258Ser259) residues of OsGF14b play an essential role in BR-mediated responses and plant development
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	plant development	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	 The serine acids (Ser258Ser259) residues of OsGF14b play an essential role in BR-mediated responses and plant development
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	brassinosteroid	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	 BR 	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	 Genetic and molecular analyses indicated that OsGF14b functions as a negative regulator in BR signaling and represses the transcriptional activation activity of OsBZR1
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	Brassinosteroid	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	BR signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	 Genetic and molecular analyses indicated that OsGF14b functions as a negative regulator in BR signaling and represses the transcriptional activation activity of OsBZR1
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	Brassinosteroid Signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	root	OsGF14b is involved in regulating coarse root and fine root biomass partitioning in response to elevated [CO(2)] in rice.	OsGF14b is involved in regulating coarse root and fine root biomass partitioning in response to elevated [CO(2)] in rice.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	biomass	OsGF14b is involved in regulating coarse root and fine root biomass partitioning in response to elevated [CO(2)] in rice.	OsGF14b is involved in regulating coarse root and fine root biomass partitioning in response to elevated [CO(2)] in rice.
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	lateral root	OsGF14b is involved in regulating coarse root and fine root biomass partitioning in response to elevated [CO(2)] in rice.	 Our results indicate that knockout of OsGF14b may improve the response to elevated [CO(2)] in rice by enhancing carbon allocation to coarse roots and to fine lateral roots
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	stress	A 14-3-3 protein positively regulates rice salt tolerance by stabilizing phospholipase C1.	 Similar to OsPLC1, OsGF14b also positively regulates rice salt tolerance, and their interaction can be promoted by NaCl stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	salt	A 14-3-3 protein positively regulates rice salt tolerance by stabilizing phospholipase C1.	 Similar to OsPLC1, OsGF14b also positively regulates rice salt tolerance, and their interaction can be promoted by NaCl stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	salt	A 14-3-3 protein positively regulates rice salt tolerance by stabilizing phospholipase C1.	 Under salt stress, the OsPLC1 protein level in osgf14b was lower than the corresponding value of WT, whereas overexpression of OsGF14b results in a significant increase of OsPLC1 stability
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	salt	A 14-3-3 protein positively regulates rice salt tolerance by stabilizing phospholipase C1.	 Taken together, we propose that OsGF14b can interact with OsPLC1 and promote its activity and stability, thereby improving rice salt tolerance
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	tolerance	A 14-3-3 protein positively regulates rice salt tolerance by stabilizing phospholipase C1.	 Taken together, we propose that OsGF14b can interact with OsPLC1 and promote its activity and stability, thereby improving rice salt tolerance
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	salt tolerance	A 14-3-3 protein positively regulates rice salt tolerance by stabilizing phospholipase C1.	 Similar to OsPLC1, OsGF14b also positively regulates rice salt tolerance, and their interaction can be promoted by NaCl stress
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	salt tolerance	A 14-3-3 protein positively regulates rice salt tolerance by stabilizing phospholipase C1.	 Taken together, we propose that OsGF14b can interact with OsPLC1 and promote its activity and stability, thereby improving rice salt tolerance
GF14b|OsGF14b	Os04g0462500	LOC_Os04g38870	salt stress	A 14-3-3 protein positively regulates rice salt tolerance by stabilizing phospholipase C1.	 Under salt stress, the OsPLC1 protein level in osgf14b was lower than the corresponding value of WT, whereas overexpression of OsGF14b results in a significant increase of OsPLC1 stability
GF14c|OsGF14C	Os08g0430500	LOC_Os08g33370	flower	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a	Functional analysis using either GF14c overexpression or knockout transgenic rice plants indicated that this interaction plays a role in the regulation of flowering
GF14c|OsGF14C	Os08g0430500	LOC_Os08g33370	flower	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a	GF14c-overexpressing plants exhibited a delay in flowering and the knockout mutants displayed early flowering relative to the wild-type plants under short-day conditions
GF14c|OsGF14C	Os08g0430500	LOC_Os08g33370	flower	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a	These results suggest that GF14c acts as a negative regulator of flowering by interacting with Hd3a
GF14c|OsGF14C	Os08g0430500	LOC_Os08g33370	flower	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a
GF14c|OsGF14C	Os08g0430500	LOC_Os08g33370	drought	Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings	Overexpression of either constitutively active OsCDPK1 or GF14c enhanced drought tolerance in transgenic rice seedlings
GF14c|OsGF14C	Os08g0430500	LOC_Os08g33370	seedling	Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings	Overexpression of either constitutively active OsCDPK1 or GF14c enhanced drought tolerance in transgenic rice seedlings
GF14c|OsGF14C	Os08g0430500	LOC_Os08g33370	drought tolerance	Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings	Overexpression of either constitutively active OsCDPK1 or GF14c enhanced drought tolerance in transgenic rice seedlings
GF14c|OsGF14C	Os08g0430500	LOC_Os08g33370	immunity	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.
GF14c|OsGF14C	Os08g0430500	LOC_Os08g33370	immunity	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 Taken together, these findings uncover the important roles of OsSCL7 and GF14c in plant immunity and a potential mechanism by which plants fine-tune immunity by regulating the protein stability of a GRAS protein via a 14-3-3 protein
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 Using GF14f-RNAi plants, we observed that a reduction in GF14f expression in the endosperm resulted in a significant increase in both grain length and weight, which in turn improved grain yield
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 These results suggest that GF14f negatively affects grain development and filling, and the observed higher abundance of the GF14f protein in IS compared to SS may be responsible for poor IS grain filling
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 The study provides insights into the molecular mechanisms underlying poor grain filling of IS and suggests that GF14f could serve as a potential tool for improving rice grain filling
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	development	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 These results suggest that GF14f negatively affects grain development and filling, and the observed higher abundance of the GF14f protein in IS compared to SS may be responsible for poor IS grain filling
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain length	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 Using GF14f-RNAi plants, we observed that a reduction in GF14f expression in the endosperm resulted in a significant increase in both grain length and weight, which in turn improved grain yield
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	starch	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 Furthermore, pull-down assays indicated that GF14f interacts with enzymes that are involved in sucrose breakdown, starch synthesis, tricarboxylic acid (TCA) cycle and glycolysis
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain yield	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 Using GF14f-RNAi plants, we observed that a reduction in GF14f expression in the endosperm resulted in a significant increase in both grain length and weight, which in turn improved grain yield
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	yield	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 Using GF14f-RNAi plants, we observed that a reduction in GF14f expression in the endosperm resulted in a significant increase in both grain length and weight, which in turn improved grain yield
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	endosperm	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 Using GF14f-RNAi plants, we observed that a reduction in GF14f expression in the endosperm resulted in a significant increase in both grain length and weight, which in turn improved grain yield
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain filling	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain filling	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 These results suggest that GF14f negatively affects grain development and filling, and the observed higher abundance of the GF14f protein in IS compared to SS may be responsible for poor IS grain filling
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain filling	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 The study provides insights into the molecular mechanisms underlying poor grain filling of IS and suggests that GF14f could serve as a potential tool for improving rice grain filling
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	sucrose	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	 Furthermore, pull-down assays indicated that GF14f interacts with enzymes that are involved in sucrose breakdown, starch synthesis, tricarboxylic acid (TCA) cycle and glycolysis
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	leaf	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	leaf	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Here, we showed that the transcription of OsGF14f was significantly induced by leaf blast infection, and the overexpression of OsGF14f quantitatively enhanced resistance to leaf blast and bacterial blight in rice
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	leaf	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Taken together, these results suggest that OsGF14f positively regulates leaf blast and bacterial blight resistance in rice via the SA-dependent signaling pathway
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	resistance	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	resistance	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Here, we showed that the transcription of OsGF14f was significantly induced by leaf blast infection, and the overexpression of OsGF14f quantitatively enhanced resistance to leaf blast and bacterial blight in rice
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	resistance	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Taken together, these results suggest that OsGF14f positively regulates leaf blast and bacterial blight resistance in rice via the SA-dependent signaling pathway
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	blight	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	blight	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Here, we showed that the transcription of OsGF14f was significantly induced by leaf blast infection, and the overexpression of OsGF14f quantitatively enhanced resistance to leaf blast and bacterial blight in rice
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	blight	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Taken together, these results suggest that OsGF14f positively regulates leaf blast and bacterial blight resistance in rice via the SA-dependent signaling pathway
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	bacterial blight	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	bacterial blight	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Here, we showed that the transcription of OsGF14f was significantly induced by leaf blast infection, and the overexpression of OsGF14f quantitatively enhanced resistance to leaf blast and bacterial blight in rice
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	bacterial blight	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Taken together, these results suggest that OsGF14f positively regulates leaf blast and bacterial blight resistance in rice via the SA-dependent signaling pathway
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	defense response	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	Although it is known that rice 14-3-3 family genes are involved in various defense responses, the functions of OsGF14f in response to diseases have not been reported
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	defense	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	Although it is known that rice 14-3-3 family genes are involved in various defense responses, the functions of OsGF14f in response to diseases have not been reported
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	blast	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	blast	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Here, we showed that the transcription of OsGF14f was significantly induced by leaf blast infection, and the overexpression of OsGF14f quantitatively enhanced resistance to leaf blast and bacterial blight in rice
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	blast	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 In addition, the expression level of OsGF14f was significantly induced after SA treatment, and higher endogenous SA levels were observed in the OsGF14f-overexpressing plants compared with that in wild-type plants, especially after blast challenge
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	blast	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 Taken together, these results suggest that OsGF14f positively regulates leaf blast and bacterial blight resistance in rice via the SA-dependent signaling pathway
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	sa	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 In addition, the expression level of OsGF14f was significantly induced after SA treatment, and higher endogenous SA levels were observed in the OsGF14f-overexpressing plants compared with that in wild-type plants, especially after blast challenge
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	SA	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 In addition, the expression level of OsGF14f was significantly induced after SA treatment, and higher endogenous SA levels were observed in the OsGF14f-overexpressing plants compared with that in wild-type plants, especially after blast challenge
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	 sa 	Overexpression of OsGF14f Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	 In addition, the expression level of OsGF14f was significantly induced after SA treatment, and higher endogenous SA levels were observed in the OsGF14f-overexpressing plants compared with that in wild-type plants, especially after blast challenge
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	 CONCLUSION: Our findings suggested that this genetic regulation by GF14f gene was the main cause leading to changes in rice yield and grain chalkiness improvement of ratoon rice, irrespective of seasonal or environmental effects
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	 A further significance was to see how yield performance and grain quality of ratoon rice were able to be achieved at higher levels via suppression of GF14f
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	resistance	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	 Furthermore, these variations were shown to be associated with a protein-coding gene: GF14f (encoding GF14f isoform of 14-3-3 proteins) and such gene negatively impacts oxidative and environmental resistance in ratoon rice
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	grain quality	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	 A further significance was to see how yield performance and grain quality of ratoon rice were able to be achieved at higher levels via suppression of GF14f
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	quality	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	 A further significance was to see how yield performance and grain quality of ratoon rice were able to be achieved at higher levels via suppression of GF14f
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	yield	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	yield	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	 CONCLUSION: Our findings suggested that this genetic regulation by GF14f gene was the main cause leading to changes in rice yield and grain chalkiness improvement of ratoon rice, irrespective of seasonal or environmental effects
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	yield	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	 A further significance was to see how yield performance and grain quality of ratoon rice were able to be achieved at higher levels via suppression of GF14f
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	oxidative	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	 Furthermore, these variations were shown to be associated with a protein-coding gene: GF14f (encoding GF14f isoform of 14-3-3 proteins) and such gene negatively impacts oxidative and environmental resistance in ratoon rice
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	chalkiness	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.
GF14f|OsGF14f	Os03g0710800	LOC_Os03g50290	chalkiness	GF14f gene is negatively associated with yield and grain chalkiness under rice ratooning.	 CONCLUSION: Our findings suggested that this genetic regulation by GF14f gene was the main cause leading to changes in rice yield and grain chalkiness improvement of ratoon rice, irrespective of seasonal or environmental effects
GFR1	Os10g0508100	LOC_Os10g36400	grain	Favorable alleles of GRAIN-FILLING RATE 1 increase the grain-filling rate and yield of rice.	Evaluation of the grain-filling rate and grain yield of F1 plants harboring GFR1Ludao and the alleles of 20 hybrids widely cultivated commercially confirmed that favorable alleles of GFR1 can be used to further improve the grain-filling rate of hybrid japonica rice
GFR1	Os10g0508100	LOC_Os10g36400	grain yield	Favorable alleles of GRAIN-FILLING RATE 1 increase the grain-filling rate and yield of rice.	Evaluation of the grain-filling rate and grain yield of F1 plants harboring GFR1Ludao and the alleles of 20 hybrids widely cultivated commercially confirmed that favorable alleles of GFR1 can be used to further improve the grain-filling rate of hybrid japonica rice
GFR1	Os10g0508100	LOC_Os10g36400	yield	Favorable alleles of GRAIN-FILLING RATE 1 increase the grain-filling rate and yield of rice.	Evaluation of the grain-filling rate and grain yield of F1 plants harboring GFR1Ludao and the alleles of 20 hybrids widely cultivated commercially confirmed that favorable alleles of GFR1 can be used to further improve the grain-filling rate of hybrid japonica rice
GFR1	Os10g0508100	LOC_Os10g36400	grain-filling	Favorable alleles of GRAIN-FILLING RATE 1 increase the grain-filling rate and yield of rice.	Evaluation of the grain-filling rate and grain yield of F1 plants harboring GFR1Ludao and the alleles of 20 hybrids widely cultivated commercially confirmed that favorable alleles of GFR1 can be used to further improve the grain-filling rate of hybrid japonica rice
GGC2	Os08g0456600	None	grain	A G-protein pathway determines grain size in rice.	Three G proteins, DEP1, GGC2 and GS3, antagonistically regulate grain size
GGC2	Os08g0456600	None	grain size	A G-protein pathway determines grain size in rice.	Three G proteins, DEP1, GGC2 and GS3, antagonistically regulate grain size
GH1	Os02g0554300	LOC_Os02g34884	phosphatase	A SAC phosphoinositide phosphatase controls rice development via hydrolyzing PI4P and PI(4,5)P2.	A SAC phosphoinositide phosphatase controls rice development via hydrolyzing PI4P and PI(4,5)P2.
GH1	Os02g0554300	LOC_Os02g34884	development	A SAC phosphoinositide phosphatase controls rice development via hydrolyzing PI4P and PI(4,5)P2.	A SAC phosphoinositide phosphatase controls rice development via hydrolyzing PI4P and PI(4,5)P2.
GH1	Os02g0554300	LOC_Os02g34884	grain number	A SAC phosphoinositide phosphatase controls rice development via hydrolyzing PI4P and PI(4,5)P2.	Here, we identified the role of GRAIN NUMBER AND PLANT HEIGHT1 (GH1), which encodes a suppressor of actin (SAC) domain-containing phosphatase with unknown function in rice (Oryza sativa).
GH1	Os02g0554300	LOC_Os02g34884	plant height	A SAC phosphoinositide phosphatase controls rice development via hydrolyzing PI4P and PI(4,5)P2.	Here, we identified the role of GRAIN NUMBER AND PLANT HEIGHT1 (GH1), which encodes a suppressor of actin (SAC) domain-containing phosphatase with unknown function in rice (Oryza sativa).
gh1|OsCHI	Os03g0819600	LOC_Os03g60509	panicle	A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype	gh1 exhibited golden pigmentation in hulls and internodes once the panicles were exposed to light
GH2|OsCAD2	Os02g0187800	LOC_Os02g09490	sheath	OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm	Promoter-GUS analysis of OsCAD2 (pCAD::GUS) in the internode, sheath, and roots revealed that GUS expression was strong in tissues that accumulated high levels of lignin
GH2|OsCAD2	Os02g0187800	LOC_Os02g09490	panicle	GOLD HULL AND INTERNODE2 encodes a primarily multifunctional cinnamyl-alcohol dehydrogenase in rice	Consistent with this finding, extracts from roots, internodes, hulls, and panicles of the gh2 plants exhibited drastically reduced CAD activity and undetectable sinapyl alcohol dehydrogenase activity
GH2|OsCAD2	Os02g0187800	LOC_Os02g09490	root	OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm	Promoter-GUS analysis of OsCAD2 (pCAD::GUS) in the internode, sheath, and roots revealed that GUS expression was strong in tissues that accumulated high levels of lignin
GH2|OsCAD2	Os02g0187800	LOC_Os02g09490	root	GOLD HULL AND INTERNODE2 encodes a primarily multifunctional cinnamyl-alcohol dehydrogenase in rice	Consistent with this finding, extracts from roots, internodes, hulls, and panicles of the gh2 plants exhibited drastically reduced CAD activity and undetectable sinapyl alcohol dehydrogenase activity
GH2|OsCAD2	Os02g0187800	LOC_Os02g09490	culm	OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm	OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm
GH2|OsCAD2	Os02g0187800	LOC_Os02g09490	cellulose	Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants.	 Solid-state nuclear magnetic resonance (NMR) and X-ray diffraction analyses of rice cell walls revealed that and OsCAD2 deficiencies contributed to the disruptions of the cellulose crystalline network
GH2|OsCAD2	Os02g0187800	LOC_Os02g09490	cellulose	Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants.	 Further, OsCAldOMT1 deficiency contributed to the increase of the cellulose molecular mobility more prominently than OsCAD2 deficiency, resulting in apparently more loosened lignocellulose molecular assembly
GH2|OsCAD2	Os02g0187800	LOC_Os02g09490	cell wall	Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants.	 A set of rice mutants harboring knockout mutations in either or both OsCAldOMT1 and OsCAD2 was generated in part by genome editing and subjected to comparative cell wall chemical and supramolecular structure analyses
GH2|OsCAD2	Os02g0187800	LOC_Os02g09490	cell wall	Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants.	 Solid-state nuclear magnetic resonance (NMR) and X-ray diffraction analyses of rice cell walls revealed that and OsCAD2 deficiencies contributed to the disruptions of the cellulose crystalline network
GH5BG	Os10g0370500	LOC_Os10g22520	sheath	A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain	The GH5BG mRNA is highly expressed in the shoot during germination and in leaf sheaths of mature plants
GH5BG	Os10g0370500	LOC_Os10g22520	seedling	A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain	The GH5BG was up-regulated in response to salt stress, submergence stress, methyl jasmonate and abscisic acid in rice seedlings
GH5BG	Os10g0370500	LOC_Os10g22520	leaf	A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain	The GH5BG mRNA is highly expressed in the shoot during germination and in leaf sheaths of mature plants
GH5BG	Os10g0370500	LOC_Os10g22520	jasmonate	A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain	The GH5BG was up-regulated in response to salt stress, submergence stress, methyl jasmonate and abscisic acid in rice seedlings
GH5BG	Os10g0370500	LOC_Os10g22520	salt	A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain	The GH5BG was up-regulated in response to salt stress, submergence stress, methyl jasmonate and abscisic acid in rice seedlings
GH5BG	Os10g0370500	LOC_Os10g22520	shoot	A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain	The GH5BG mRNA is highly expressed in the shoot during germination and in leaf sheaths of mature plants
GH5BG	Os10g0370500	LOC_Os10g22520	submergence	A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain	The GH5BG was up-regulated in response to salt stress, submergence stress, methyl jasmonate and abscisic acid in rice seedlings
GH5BG	Os10g0370500	LOC_Os10g22520	salt stress	A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain	The GH5BG was up-regulated in response to salt stress, submergence stress, methyl jasmonate and abscisic acid in rice seedlings
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	leaf	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	leaf	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Ghd2 is expressed mainly in the rice (Oryza sativa) leaf with the highest level detected at the grain-filling stage, and it is down-regulated by drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	leaf	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	The earlier senescence symptoms and the transcript up-regulation of many senescence-associated genes (SAGs) in Ghd2-overexpressing transgenic rice plants under drought stress conditions indicate that Ghd2 plays essential roles in accelerating drought-induced leaf senescence in rice
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	leaf	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Moreover, developmental and dark-induced leaf senescence was accelerated in the Ghd2-overexpressing rice and delayed in the ghd2 mutant
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	growth	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	resistance	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Ghd2 is expressed mainly in the rice (Oryza sativa) leaf with the highest level detected at the grain-filling stage, and it is down-regulated by drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Overexpression of Ghd2 resulted in significantly reduced drought resistance, while its knockout mutant showed the opposite phenotype
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	The earlier senescence symptoms and the transcript up-regulation of many senescence-associated genes (SAGs) in Ghd2-overexpressing transgenic rice plants under drought stress conditions indicate that Ghd2 plays essential roles in accelerating drought-induced leaf senescence in rice
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	OsARID3 and OsPURα showed expression patterns similar to Ghd2 in rice leaves, with the highest levels at the grain-filling stage, whereas OsARID3 and the 14-3-3 genes responded differently to drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	grain number	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	yield	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	stress	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Ghd2 is expressed mainly in the rice (Oryza sativa) leaf with the highest level detected at the grain-filling stage, and it is down-regulated by drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	stress	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	The earlier senescence symptoms and the transcript up-regulation of many senescence-associated genes (SAGs) in Ghd2-overexpressing transgenic rice plants under drought stress conditions indicate that Ghd2 plays essential roles in accelerating drought-induced leaf senescence in rice
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	stress	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	OsARID3 and OsPURα showed expression patterns similar to Ghd2 in rice leaves, with the highest levels at the grain-filling stage, whereas OsARID3 and the 14-3-3 genes responded differently to drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	heading date	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	plant height	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	senescence	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	senescence	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	The earlier senescence symptoms and the transcript up-regulation of many senescence-associated genes (SAGs) in Ghd2-overexpressing transgenic rice plants under drought stress conditions indicate that Ghd2 plays essential roles in accelerating drought-induced leaf senescence in rice
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	senescence	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Moreover, developmental and dark-induced leaf senescence was accelerated in the Ghd2-overexpressing rice and delayed in the ghd2 mutant
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	senescence	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	These results indicate that Ghd2 functions as a regulator by integrating environmental signals with the senescence process into a developmental programme through interaction with different proteins
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought resistance	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought resistance	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Overexpression of Ghd2 resulted in significantly reduced drought resistance, while its knockout mutant showed the opposite phenotype
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	leaf senescence	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Here, we found that a CO-like gene, Ghd2 (Grain number, plant height, and heading date2), which can increase the yield potential under normal growth condition just like its homologue Ghd7, is involved in the regulation of leaf senescence and drought resistance
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	leaf senescence	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	The earlier senescence symptoms and the transcript up-regulation of many senescence-associated genes (SAGs) in Ghd2-overexpressing transgenic rice plants under drought stress conditions indicate that Ghd2 plays essential roles in accelerating drought-induced leaf senescence in rice
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	leaf senescence	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Moreover, developmental and dark-induced leaf senescence was accelerated in the Ghd2-overexpressing rice and delayed in the ghd2 mutant
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought stress	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Ghd2 is expressed mainly in the rice (Oryza sativa) leaf with the highest level detected at the grain-filling stage, and it is down-regulated by drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought stress	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	The earlier senescence symptoms and the transcript up-regulation of many senescence-associated genes (SAGs) in Ghd2-overexpressing transgenic rice plants under drought stress conditions indicate that Ghd2 plays essential roles in accelerating drought-induced leaf senescence in rice
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought stress	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	OsARID3 and OsPURα showed expression patterns similar to Ghd2 in rice leaves, with the highest levels at the grain-filling stage, whereas OsARID3 and the 14-3-3 genes responded differently to drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought stress 	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Ghd2 is expressed mainly in the rice (Oryza sativa) leaf with the highest level detected at the grain-filling stage, and it is down-regulated by drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought stress 	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	The earlier senescence symptoms and the transcript up-regulation of many senescence-associated genes (SAGs) in Ghd2-overexpressing transgenic rice plants under drought stress conditions indicate that Ghd2 plays essential roles in accelerating drought-induced leaf senescence in rice
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	drought stress 	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	OsARID3 and OsPURα showed expression patterns similar to Ghd2 in rice leaves, with the highest levels at the grain-filling stage, whereas OsARID3 and the 14-3-3 genes responded differently to drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	grain-filling	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	Ghd2 is expressed mainly in the rice (Oryza sativa) leaf with the highest level detected at the grain-filling stage, and it is down-regulated by drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	grain-filling	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	OsARID3 and OsPURα showed expression patterns similar to Ghd2 in rice leaves, with the highest levels at the grain-filling stage, whereas OsARID3 and the 14-3-3 genes responded differently to drought stress conditions
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	heading date	The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.	The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	heading date	The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.	 However, the target gene of Ghd2 regulating heading date is still unknown
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	heading date	The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.	 A comparison of the heading dates among plants with CO3 knocked out or overexpressed and double mutants overexpressing Ghd2 with CO3 knocked out shows that CO3 negatively and constantly regulates flowering by repressing the transcription of Ehd1, Hd3a, and RFT1
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	heading date	The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.	 Taken together, these results suggest that Ghd2 directly binds to the downstream gene CO3, and the Ghd2-CO3 module constantly delays heading date via the Ehd1-mediated pathway
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	flowering	The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.	 A comparison of the heading dates among plants with CO3 knocked out or overexpressed and double mutants overexpressing Ghd2 with CO3 knocked out shows that CO3 negatively and constantly regulates flowering by repressing the transcription of Ehd1, Hd3a, and RFT1
Ghd2|OsK	Os02g0731700	LOC_Os02g49880	transcriptional activator	The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.	The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.
Ghd7	Os07g0261200	LOC_Os07g15770	height	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Here we show that the quantitative trait locus (QTL) Ghd7, isolated from an elite rice hybrid and encoding a CCT domain protein, has major effects on an array of traits in rice, including number of grains per panicle, plant height and heading date
Ghd7	Os07g0261200	LOC_Os07g15770	height	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Enhanced expression of Ghd7 under long-day conditions delays heading and increases plant height and panicle size
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Ghd7	Os07g0261200	LOC_Os07g15770	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Ehd1 and Hd3a can also be down-regulated by the photoperiodic flowering genes Ghd7 and Hd1 (a rice ortholog of CONSTANS)
Ghd7	Os07g0261200	LOC_Os07g15770	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	By using near-isogenic lines with functional or deficient alleles of several rice flowering-time genes, we observed significant digenetic interactions between Hd16 and four other flowering-time genes (Ghd7, Hd1, DTH8 and Hd2)
Ghd7	Os07g0261200	LOC_Os07g15770	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	These results demonstrate that Hd16 acts as an inhibitor in the rice flowering pathway by enhancing the photoperiod response as a result of the phosphorylation of Ghd7
Ghd7	Os07g0261200	LOC_Os07g15770	grain	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Ghd7	Os07g0261200	LOC_Os07g15770	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	On the other hand, under long-day (LD) conditions, flowering is delayed by the repressive function of Hd1 on FT-like genes and by downregulation of Ehd1 by the flowering repressor Ghd7 - a unique pathway in rice
Ghd7	Os07g0261200	LOC_Os07g15770	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Furthermore, Ehd3 ghd7 plants flowered earlier and show higher Ehd1 transcript levels than ehd3 ghd7 plants, suggesting a Ghd7-independent role of Ehd3 in the upregulation of Ehd1
Ghd7	Os07g0261200	LOC_Os07g15770	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	We propose that both positive (OsMADS50 and Ehd1) and negative (Hd1, phyB and Ghd7) regulators of RFT1 form a gene network that regulates LD flowering in rice
Ghd7	Os07g0261200	LOC_Os07g15770	height	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Ghd7 (Grain number, plant height and heading date 7) was acutely induced when phytochrome signals coincided with a photosensitive phase set differently by distinct photoperiods and this induction repressed Ehd1 the next morning
Ghd7	Os07g0261200	LOC_Os07g15770	height	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in ostrx1
Ghd7	Os07g0261200	LOC_Os07g15770	floral	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Increased transcription of Ghd7 under LD conditions and reduced transcription of downstream Ehd1 and FT-like genes in the ehd3 mutants suggested that Ehd3 normally functions as an LD downregulator of Ghd7 in floral induction
Ghd7	Os07g0261200	LOC_Os07g15770	height	Evolution and association analysis of Ghd7 in rice	rufipogon) was used to analyze the evolution and association of Ghd7 with plant height, heading date, and yield
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Evolution and association analysis of Ghd7 in rice	rufipogon) was used to analyze the evolution and association of Ghd7 with plant height, heading date, and yield
Ghd7	Os07g0261200	LOC_Os07g15770	grain number	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Ghd7	Os07g0261200	LOC_Os07g15770	grain	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in ostrx1
Ghd7	Os07g0261200	LOC_Os07g15770	grain	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Ghd7	Os07g0261200	LOC_Os07g15770	height	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Ghd7	Os07g0261200	LOC_Os07g15770	height	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Meanwhile, the transcription of DTH8 has been proved to be independent of Ghd7 and Hd1, and the natural mutation of this gene caused weak photoperiod sensitivity and shorter plant height
Ghd7	Os07g0261200	LOC_Os07g15770	grain	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Analyses using a rice phytochrome chromophore-deficient mutant, photoperiod sensitivity5, have so far revealed that within this network, phytochromes are required for expression of Grain number, plant height and heading date7 (Ghd7), a floral repressor gene in rice
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Ghd7 (Grain number, plant height and heading date 7) was acutely induced when phytochrome signals coincided with a photosensitive phase set differently by distinct photoperiods and this induction repressed Ehd1 the next morning
Ghd7	Os07g0261200	LOC_Os07g15770	grain number	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions	Similarly, in the homozygous Koshihikari genetic background at Ghd7, the difference in heading date caused by different alleles at Hd2 was smaller than in plants homozygous for the Hayamasari Ghd7 allele
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions	In addition, QTLs near Hd2, Hd16, and Ghd7, which are involved in inhibition of heading under long-day conditions, function in the same pathway that controls heading date
Ghd7	Os07g0261200	LOC_Os07g15770	height	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Ghd7	Os07g0261200	LOC_Os07g15770	grain	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Here we show that the quantitative trait locus (QTL) Ghd7, isolated from an elite rice hybrid and encoding a CCT domain protein, has major effects on an array of traits in rice, including number of grains per panicle, plant height and heading date
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Ghd7	Os07g0261200	LOC_Os07g15770	grain number	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in ostrx1
Ghd7	Os07g0261200	LOC_Os07g15770	grain number	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Analyses using a rice phytochrome chromophore-deficient mutant, photoperiod sensitivity5, have so far revealed that within this network, phytochromes are required for expression of Grain number, plant height and heading date7 (Ghd7), a floral repressor gene in rice
Ghd7	Os07g0261200	LOC_Os07g15770	domestication	Evolution and association analysis of Ghd7 in rice	SNP changes between haplotypes indicated that Ghd7 evolved from two distinct ancestral gene pools, and independent domestication processes were detected in indica and japonica varietals respectively
Ghd7	Os07g0261200	LOC_Os07g15770	grains per panicle	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Here we show that the quantitative trait locus (QTL) Ghd7, isolated from an elite rice hybrid and encoding a CCT domain protein, has major effects on an array of traits in rice, including number of grains per panicle, plant height and heading date
Ghd7	Os07g0261200	LOC_Os07g15770	grain	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Ghd7 (Grain number, plant height and heading date 7) was acutely induced when phytochrome signals coincided with a photosensitive phase set differently by distinct photoperiods and this induction repressed Ehd1 the next morning
Ghd7	Os07g0261200	LOC_Os07g15770	flower	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Ghd7	Os07g0261200	LOC_Os07g15770	floral	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Thus, two distinct gating mechanisms--of the floral promoter Ehd1 and the floral repressor Ghd7--could enable manipulation of slight differences in day length to control Hd3a transcription with a critical day-length threshold
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in ostrx1
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	Transcript levels of OsGI, phytochrome genes, and Early heading date3 (Ehd3), which function upstream of Ghd7, were unchanged in the mutant
Ghd7	Os07g0261200	LOC_Os07g15770	panicle	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Here we show that the quantitative trait locus (QTL) Ghd7, isolated from an elite rice hybrid and encoding a CCT domain protein, has major effects on an array of traits in rice, including number of grains per panicle, plant height and heading date
Ghd7	Os07g0261200	LOC_Os07g15770	panicle	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Enhanced expression of Ghd7 under long-day conditions delays heading and increases plant height and panicle size
Ghd7	Os07g0261200	LOC_Os07g15770	floral	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Analyses using a rice phytochrome chromophore-deficient mutant, photoperiod sensitivity5, have so far revealed that within this network, phytochromes are required for expression of Grain number, plant height and heading date7 (Ghd7), a floral repressor gene in rice
Ghd7	Os07g0261200	LOC_Os07g15770	floral	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Moreover, phyB and phyA can affect Ghd7 activity and Early heading date1 (a floral inducer) activity in the network, respectively
Ghd7	Os07g0261200	LOC_Os07g15770	flower	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Ghd7	Os07g0261200	LOC_Os07g15770	height	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Analyses using a rice phytochrome chromophore-deficient mutant, photoperiod sensitivity5, have so far revealed that within this network, phytochromes are required for expression of Grain number, plant height and heading date7 (Ghd7), a floral repressor gene in rice
Ghd7	Os07g0261200	LOC_Os07g15770	panicle size	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Enhanced expression of Ghd7 under long-day conditions delays heading and increases plant height and panicle size
Ghd7	Os07g0261200	LOC_Os07g15770	breeding	Evolution and association analysis of Ghd7 in rice	These associations provide the potential for flexibility of Ghd7 application in rice breeding programs
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Analyses using a rice phytochrome chromophore-deficient mutant, photoperiod sensitivity5, have so far revealed that within this network, phytochromes are required for expression of Grain number, plant height and heading date7 (Ghd7), a floral repressor gene in rice
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Moreover, phyB and phyA can affect Ghd7 activity and Early heading date1 (a floral inducer) activity in the network, respectively
Ghd7	Os07g0261200	LOC_Os07g15770	flower	Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes	Notably, the japonica varieties harboring nonfunctional alleles of both Ghd7/Hd4 and PRR37/Hd2 flower extremely early under natural long-day conditions, and are adapted to the northernmost regions of rice cultivation, up to 53 degrees N latitude
Ghd7	Os07g0261200	LOC_Os07g15770	flower	Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes	Genetic analysis revealed that the effects of PRR37 and Ghd7 alleles on heading date are additive, and PRR37 down-regulates Hd3a expression to suppress flowering under long-day conditions
Ghd7	Os07g0261200	LOC_Os07g15770	grain number	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Ghd7 (Grain number, plant height and heading date 7) was acutely induced when phytochrome signals coincided with a photosensitive phase set differently by distinct photoperiods and this induction repressed Ehd1 the next morning
Ghd7	Os07g0261200	LOC_Os07g15770	adaptability	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Thus, Ghd7 has played crucial roles for increasing productivity and adaptability of rice globally
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes	Genetic analysis revealed that the effects of PRR37 and Ghd7 alleles on heading date are additive, and PRR37 down-regulates Hd3a expression to suppress flowering under long-day conditions
Ghd7	Os07g0261200	LOC_Os07g15770	yield	Evolution and association analysis of Ghd7 in rice	rufipogon) was used to analyze the evolution and association of Ghd7 with plant height, heading date, and yield
Ghd7	Os07g0261200	LOC_Os07g15770	yield	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Here we show that the quantitative trait locus (QTL) Ghd7, isolated from an elite rice hybrid and encoding a CCT domain protein, has major effects on an array of traits in rice, including number of grains per panicle, plant height and heading date
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice
Ghd7	Os07g0261200	LOC_Os07g15770	chloroplast	Genetic architecture of natural variation in rice chlorophyll content revealed by genome wide association study.	The enhanced expression of Ghd7 decreased chlorophyll content, mainly through down-regulating the expression of genes involved in the biosynthesis of chlorophyll and chloroplast
Ghd7	Os07g0261200	LOC_Os07g15770	map-based cloning	Combinations of the Ghd7, Ghd8 and Hd1 genes largely define the ecogeographical adaptation and yield potential of cultivated rice.	We employed a map-based cloning approach to isolate a heading date gene, which coordinated the interaction between Ghd7 and Ghd8 to greatly delay rice heading
Ghd7	Os07g0261200	LOC_Os07g15770	map-based cloning	Combinations of the Ghd7, Ghd8 and Hd1 genes largely define the ecogeographical adaptation and yield potential of cultivated rice.	Map-based cloning demonstrated that the gene largely affecting the interaction between Ghd7 and Ghd8 was Hd1
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Combinations of the Ghd7, Ghd8 and Hd1 genes largely define the ecogeographical adaptation and yield potential of cultivated rice.	We employed a map-based cloning approach to isolate a heading date gene, which coordinated the interaction between Ghd7 and Ghd8 to greatly delay rice heading
Ghd7	Os07g0261200	LOC_Os07g15770	floral	Hd1,a CONSTANS Orthlog in Rice, Functions as an Ehd1 Repressor Through Interaction with Monocot-Specific CCT-Domain Protein Ghd7.	Here, we report biological interactions between Ghd7 and Hd1, which together repress Early heading date 1 (Ehd1), a key floral inducer under non-inductive long-day (LD) conditions
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Hd1,a CONSTANS Orthlog in Rice, Functions as an Ehd1 Repressor Through Interaction with Monocot-Specific CCT-Domain Protein Ghd7.	Here, we report biological interactions between Ghd7 and Hd1, which together repress Early heading date 1 (Ehd1), a key floral inducer under non-inductive long-day (LD) conditions
Ghd7	Os07g0261200	LOC_Os07g15770	transcriptional activator	Hd1,a CONSTANS Orthlog in Rice, Functions as an Ehd1 Repressor Through Interaction with Monocot-Specific CCT-Domain Protein Ghd7.	These findings imply that Hd1, an evolutionally conserved transcriptional activator, can function as a strong transcriptional repressor within a monocot-specific flowering-time pathway through with Ghd7
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Alternative functions of Hd1 in repressing or promoting heading are determined by Ghd7 status under long-day conditions.	 These findings suggest that Hd1 alone essentially acts as a promoter of heading date, and the protein interaction between Ghd7 and Hd1 determines photoperiod sensitivity and integrated Hd1-mediated and Ehd1-mediated flowering pathways in rice
Ghd7	Os07g0261200	LOC_Os07g15770	yield	Importance of the Interaction between Heading Date Genes Hd1 and Ghd7 for Controlling Yield Traits in Rice.	Importance of the Interaction between Heading Date Genes Hd1 and Ghd7 for Controlling Yield Traits in Rice.
Ghd7	Os07g0261200	LOC_Os07g15770	yield	Importance of the Interaction between Heading Date Genes Hd1 and Ghd7 for Controlling Yield Traits in Rice.	 In this study, influences of interaction between Hd1 and Ghd7 on flowering time and yield traits were analyzed using near isogenic lines derived from a cross between indica rice cultivars ZS97 and MY46
Ghd7	Os07g0261200	LOC_Os07g15770	heading date	Importance of the Interaction between Heading Date Genes Hd1 and Ghd7 for Controlling Yield Traits in Rice.	Importance of the Interaction between Heading Date Genes Hd1 and Ghd7 for Controlling Yield Traits in Rice.
Ghd7	Os07g0261200	LOC_Os07g15770	flowering time	Importance of the Interaction between Heading Date Genes Hd1 and Ghd7 for Controlling Yield Traits in Rice.	 In this study, influences of interaction between Hd1 and Ghd7 on flowering time and yield traits were analyzed using near isogenic lines derived from a cross between indica rice cultivars ZS97 and MY46
Ghd7	Os07g0261200	LOC_Os07g15770	flowering time	Posttranscriptional regulation of Ghd7 protein stability by phytochrome and OsGI in photoperiodic control of flowering in rice.	 Ghd7 is a major regulator of flowering time in rice, which strongly delays flowering under LD
Ghd7	Os07g0261200	LOC_Os07g15770	flowering time	Posttranscriptional regulation of Ghd7 protein stability by phytochrome and OsGI in photoperiodic control of flowering in rice.	 We also found that co-expressing OsGI with Ghd7 causes reduced accumulation of Ghd7 protein and partially suppresses the delayed flowering phenotype in the wild type background, suggesting that phytochromes and OsGI play antagonist roles in regulating Ghd7 protein stability and flowering time
Ghd7	Os07g0261200	LOC_Os07g15770	transcription factor	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 This study was carried out to explore the transcription factor binding site (TFBS) architecture of the GhD7 promoter to identify the regulatory dynamics of GhD7 transcription
Ghd7	Os07g0261200	LOC_Os07g15770	transcription factor	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 In addition to the previously identified 8 cis-elements, 448 novel cis-elements were identified in the GhD7 promoter that provide binding sites for 25 transcription factor families
Ghd7	Os07g0261200	LOC_Os07g15770	transcription factor	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 The identified transcription factor families include key transcription factors involved in both development and abiotic stress responses, revealing the regulatory dynamics of GhD7
Ghd7	Os07g0261200	LOC_Os07g15770	development	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.
Ghd7	Os07g0261200	LOC_Os07g15770	development	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 The identified transcription factor families include key transcription factors involved in both development and abiotic stress responses, revealing the regulatory dynamics of GhD7
Ghd7	Os07g0261200	LOC_Os07g15770	yield	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 GhD7 delays the plant's flowering under long-day conditions, which ultimately results in increased yield
Ghd7	Os07g0261200	LOC_Os07g15770	abiotic stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.
Ghd7	Os07g0261200	LOC_Os07g15770	abiotic stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 Recent findings indicate that GhD7 also plays a major role in the abiotic stress response; however, the fine regulatory mechanisms controlling Ghd7 expression have yet to be uncovered
Ghd7	Os07g0261200	LOC_Os07g15770	abiotic stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 The identified transcription factor families include key transcription factors involved in both development and abiotic stress responses, revealing the regulatory dynamics of GhD7
Ghd7	Os07g0261200	LOC_Os07g15770	abiotic stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 This study supports the model that GhD7 acts as a central regulator of rice growth, development, and the abiotic stress response
Ghd7	Os07g0261200	LOC_Os07g15770	stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.
Ghd7	Os07g0261200	LOC_Os07g15770	stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 Recent findings indicate that GhD7 also plays a major role in the abiotic stress response; however, the fine regulatory mechanisms controlling Ghd7 expression have yet to be uncovered
Ghd7	Os07g0261200	LOC_Os07g15770	stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 The identified transcription factor families include key transcription factors involved in both development and abiotic stress responses, revealing the regulatory dynamics of GhD7
Ghd7	Os07g0261200	LOC_Os07g15770	stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 This study supports the model that GhD7 acts as a central regulator of rice growth, development, and the abiotic stress response
Ghd7	Os07g0261200	LOC_Os07g15770	architecture	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.
Ghd7	Os07g0261200	LOC_Os07g15770	architecture	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 This study was carried out to explore the transcription factor binding site (TFBS) architecture of the GhD7 promoter to identify the regulatory dynamics of GhD7 transcription
Ghd7	Os07g0261200	LOC_Os07g15770	biotic stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.
Ghd7	Os07g0261200	LOC_Os07g15770	biotic stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 Recent findings indicate that GhD7 also plays a major role in the abiotic stress response; however, the fine regulatory mechanisms controlling Ghd7 expression have yet to be uncovered
Ghd7	Os07g0261200	LOC_Os07g15770	biotic stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 The identified transcription factor families include key transcription factors involved in both development and abiotic stress responses, revealing the regulatory dynamics of GhD7
Ghd7	Os07g0261200	LOC_Os07g15770	biotic stress	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 This study supports the model that GhD7 acts as a central regulator of rice growth, development, and the abiotic stress response
Ghd7	Os07g0261200	LOC_Os07g15770	stress response	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.
Ghd7	Os07g0261200	LOC_Os07g15770	stress response	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 Recent findings indicate that GhD7 also plays a major role in the abiotic stress response; however, the fine regulatory mechanisms controlling Ghd7 expression have yet to be uncovered
Ghd7	Os07g0261200	LOC_Os07g15770	stress response	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 The identified transcription factor families include key transcription factors involved in both development and abiotic stress responses, revealing the regulatory dynamics of GhD7
Ghd7	Os07g0261200	LOC_Os07g15770	stress response	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	 This study supports the model that GhD7 acts as a central regulator of rice growth, development, and the abiotic stress response
Ghd7	Os07g0261200	LOC_Os07g15770	flowering time	Knockouts of a late flowering gene via CRISPR-Cas9 confer early maturity in rice at multiple field locations	 OsGhd7 is a functional allele of the Ghd7 gene family; knockouts of OsGhd7 generated by CRISPR-Cas9 significantly accelerated flowering time and the earliness of the flowering time depended on field location
Ghd7	Os07g0261200	LOC_Os07g15770	flowering	Knockouts of a late flowering gene via CRISPR-Cas9 confer early maturity in rice at multiple field locations	 OsGhd7 is a functional allele of the Ghd7 gene family; knockouts of OsGhd7 generated by CRISPR-Cas9 significantly accelerated flowering time and the earliness of the flowering time depended on field location
Ghd7	Os07g0261200	LOC_Os07g15770	flowering time	Genetic effect of a new allele for the flowering time locus Ghd7 in rice	Genetic effect of a new allele for the flowering time locus Ghd7 in rice
Ghd7	Os07g0261200	LOC_Os07g15770	flowering time	Genetic effect of a new allele for the flowering time locus Ghd7 in rice	 Segregation analysis using an F2 population derived from the cross between Hoshinoyume and Sorachi demonstrated that the Ghd7 locus contributed to extremely early flowering time in Sorachi
Ghd7	Os07g0261200	LOC_Os07g15770	flowering time	Genetic effect of a new allele for the flowering time locus Ghd7 in rice	 This Ghd7 allele in Sorachi showed a weak function in terms of delay of flowering time, compared with loss-of-function allele, and a distinct distribution in northern Japan
Ghd7	Os07g0261200	LOC_Os07g15770	flowering	Genetic effect of a new allele for the flowering time locus Ghd7 in rice	Genetic effect of a new allele for the flowering time locus Ghd7 in rice
Ghd7	Os07g0261200	LOC_Os07g15770	flowering	Genetic effect of a new allele for the flowering time locus Ghd7 in rice	 Segregation analysis using an F2 population derived from the cross between Hoshinoyume and Sorachi demonstrated that the Ghd7 locus contributed to extremely early flowering time in Sorachi
Ghd7	Os07g0261200	LOC_Os07g15770	flowering	Genetic effect of a new allele for the flowering time locus Ghd7 in rice	 This Ghd7 allele in Sorachi showed a weak function in terms of delay of flowering time, compared with loss-of-function allele, and a distinct distribution in northern Japan
Ghd7	Os07g0261200	LOC_Os07g15770	temperature	High Ambient Temperatures Inhibit Ghd7-mediated Flowering Repression in Rice	 We also revealed that PhyB can control Ghd7 repressor activity as a temperature sensor to inhibit Ehd1, Hd3a, and RFT1 at lower temperatures, likely through a post-transcriptional regulation, despite inductive photoperiod conditions
Ghd7	Os07g0261200	LOC_Os07g15770	growth	High Ambient Temperatures Inhibit Ghd7-mediated Flowering Repression in Rice	 In addition to delayed flowering because of low growth rates, we found that photoperiodic flowering is clearly enhanced by both Hd1 and Ghd7 genes under low-temperature conditions in rice
Ghd7	Os07g0261200	LOC_Os07g15770	floral	High Ambient Temperatures Inhibit Ghd7-mediated Flowering Repression in Rice	 The rising of ambient temperatures in early summer would contribute to inhibition of Ghd7 repressor activity, resulting in the appropriate floral induction of rice in temperate climates
Ghd7	Os07g0261200	LOC_Os07g15770	growth rate	High Ambient Temperatures Inhibit Ghd7-mediated Flowering Repression in Rice	 In addition to delayed flowering because of low growth rates, we found that photoperiodic flowering is clearly enhanced by both Hd1 and Ghd7 genes under low-temperature conditions in rice
Ghd7	Os07g0261200	LOC_Os07g15770	flowering	High Ambient Temperatures Inhibit Ghd7-mediated Flowering Repression in Rice	 In addition to delayed flowering because of low growth rates, we found that photoperiodic flowering is clearly enhanced by both Hd1 and Ghd7 genes under low-temperature conditions in rice
Ghd7	Os07g0261200	LOC_Os07g15770	transcriptional regulator	The amino acid residue E96 orf Ghd8 is crucial for the formation of the flowering repression complex Ghd7-Ghd8-OsHAP5C in rice.	 A Ghd7 involved transcriptional regulatory network has been established, but its translational regulatory pathway is poorly understood
Ghd7	Os07g0261200	LOC_Os07g15770	flowering	The amino acid residue E96 orf Ghd8 is crucial for the formation of the flowering repression complex Ghd7-Ghd8-OsHAP5C in rice.	Ghd7 is an important gene involving in photoperiod flowering pathway in rice
Ghd7	Os07g0261200	LOC_Os07g15770	flowering	The amino acid residue E96 orf Ghd8 is crucial for the formation of the flowering repression complex Ghd7-Ghd8-OsHAP5C in rice.	 These findings are helpful to deeply understand the Ghd7 involved photoperiod flowering pathway and promote the elucidation of rice heading
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	panicle	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	yield	Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice	Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	height	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	heading date	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	grain	Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice	Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	spikelet	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	grain yield	Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice	Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	spikelets per panicle	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)	Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.)
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	grain	Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.	Further, we find that haplotype combinations of DTH7 with Grain number, plant height, and heading date 7 (Ghd7) and DTH8 correlate well with the heading date and grain yield of rice under different photoperiod conditions
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	yield	Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.	Further, we find that haplotype combinations of DTH7 with Grain number, plant height, and heading date 7 (Ghd7) and DTH8 correlate well with the heading date and grain yield of rice under different photoperiod conditions
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	flowering time	Switching genetic effects of the flowering time gene Hd1 in LD conditions by Ghd7 and OsPRR37 in rice.	Switching genetic effects of the flowering time gene Hd1 in LD conditions by Ghd7 and OsPRR37 in rice.
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	flowering time	Switching genetic effects of the flowering time gene Hd1 in LD conditions by Ghd7 and OsPRR37 in rice.	Genetic analyses, including segregation analyses, evaluations of near isogenic lines, and transformation for flowering time demonstrated that Hd1 promoted flowering time in inductive SD and non-inductive LD conditions in genetic condition of loss-of-function Ghd7 and OsPRR37 (ghd7osprr37) in rice
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	flowering time	Switching genetic effects of the flowering time gene Hd1 in LD conditions by Ghd7 and OsPRR37 in rice.	Functional Ghd7 or OsPRR37 may switch the genetic effects of Hd1 from the promotion to the delay of flowering times in LD conditions
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	heading date	Genetic Interactions Among Ghd7, Ghd8, OsPRR37 and Hd1 Contribute to Large Variation in Heading Date in Rice.	Genetic Interactions Among Ghd7, Ghd8, OsPRR37 and Hd1 Contribute to Large Variation in Heading Date in Rice.
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	grain	OsPRR37 Alternatively Promotes Heading Date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions	Genetic analysis indicated that the promotion of heading date and reduction in grain yield by OsPRR37 were partially dependent on Ghd7
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	map-based cloning	OsPRR37 Alternatively Promotes Heading Date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions	Map-based cloning facilitated by the MutMap strategy revealed that LHD7 was on the same locus as OsPRR37 but exhibited a novel function as a promoter of heading date
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	grain yield	OsPRR37 Alternatively Promotes Heading Date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions	Genetic analysis indicated that the promotion of heading date and reduction in grain yield by OsPRR37 were partially dependent on Ghd7
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	yield	OsPRR37 Alternatively Promotes Heading Date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions	Genetic analysis indicated that the promotion of heading date and reduction in grain yield by OsPRR37 were partially dependent on Ghd7
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	heading date	OsPRR37 Alternatively Promotes Heading Date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions	OsPRR37 Alternatively Promotes Heading Date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	heading date	OsPRR37 Alternatively Promotes Heading Date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions	Map-based cloning facilitated by the MutMap strategy revealed that LHD7 was on the same locus as OsPRR37 but exhibited a novel function as a promoter of heading date
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	heading date	OsPRR37 Alternatively Promotes Heading Date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions	Genetic analysis indicated that the promotion of heading date and reduction in grain yield by OsPRR37 were partially dependent on Ghd7
Ghd7.1|Hd2|OsPRR37|DTH7	Os07g0695100	LOC_Os07g49460	heading date	OsPRR37 Alternatively Promotes Heading Date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions	Our study revealed the distinct role of OsPRR37 in the ZH11 background, which provides a more comprehensive understanding of OsPRR37 function and enriches the theoretical bases for improvement of rice heading date in the future
GIC	Os04g0675800	LOC_Os04g57920	growth	A Mutation in GIANT CHLOROPLAST Encoding a PARC6 Homologue Affects Spikelet Fertility in Rice.	Characterization of gic phenotypes in a rice field showed that gic exhibited defective growth in seed setting, suggesting that the gic mutant negatively affects the reproductive stage
GIC	Os04g0675800	LOC_Os04g57920	seed	A Mutation in GIANT CHLOROPLAST Encoding a PARC6 Homologue Affects Spikelet Fertility in Rice.	Characterization of gic phenotypes in a rice field showed that gic exhibited defective growth in seed setting, suggesting that the gic mutant negatively affects the reproductive stage
GIC	Os04g0675800	LOC_Os04g57920	reproductive	A Mutation in GIANT CHLOROPLAST Encoding a PARC6 Homologue Affects Spikelet Fertility in Rice.	Characterization of gic phenotypes in a rice field showed that gic exhibited defective growth in seed setting, suggesting that the gic mutant negatively affects the reproductive stage
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor, GID1, and DELLA proteins	To investigate gibberellin (GA) signaling using the rice (Oryza sativa) GA receptor GIBBERELLIN-INSENSITIVE DWARF1 (GID1) mutant gid1-8, we isolated a suppressor mutant, Suppressor of gid1-1 (Sgd-1)
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	seed germination	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations	Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	An exception is the GA-insensitive F-box mutant gid2, which shows milder dwarfism than mutants such as gid1 and cps even though it accumulates higher levels of SLR1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	The level of SLR1 protein in gid2 was decreased by loss of GID1 function or treatment with a GA biosynthesis inhibitor, and dwarfism was enhanced
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	Conversely, overproduction of GID1 or treatment with GA(3) increased the SLR1 level in gid2 and reduced dwarfism
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	homeostasis	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin	Previously, a yeast two-hybrid (Y2H) assay revealed that the GID1-GA complex directly interacts with SLENDER RICE1 (SLR1), a DELLA repressor protein in GA signaling
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin	GA(4) was found to have the highest affinity to GID1 in Y2H assays and is the most effective form of GA in planta
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin	To identify the important regions of GID1 for GA and SLR1 interactions, we used many different mutant versions of GID1, such as the spontaneous mutant GID1s, N- and C-terminal truncated GID1s, and mutagenized GID1 proteins with conserved amino acids replaced with Ala
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin	The amino acid residues important for SLR1 interaction completely overlapped the residues required for GA binding that were scattered throughout the GID1 molecule
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin	GIBBERELLIN INSENSITIVE DWARF1 (GID1) encodes a soluble gibberellin (GA) receptor that shares sequence similarity with a hormone-sensitive lipase (HSL)
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	seed	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor, GID1, and DELLA proteins	To investigate gibberellin (GA) signaling using the rice (Oryza sativa) GA receptor GIBBERELLIN-INSENSITIVE DWARF1 (GID1) mutant gid1-8, we isolated a suppressor mutant, Suppressor of gid1-1 (Sgd-1)
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice	It is assumed that interaction between GIBBERELLIN INSENSITIVE DWARF1 (GID1) and the N-terminal DELLA/TVHYNP motif of SLR1 triggers F-box protein GID2-mediated SLR1 degradation
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	growth	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	Under normal growth conditions, there was more PBZ1 protein in gid1 than in the wild type
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	A recessive gibberellin (GA)-insensitive dwarf mutant of rice, gibberellin-insensitive dwarf1 (gid1), has been identified, which shows a severe dwarf phenotype and contains high concentrations of endogenous GA
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice	It is assumed that interaction between GIBBERELLIN INSENSITIVE DWARF1 (GID1) and the N-terminal DELLA/TVHYNP motif of SLR1 triggers F-box protein GID2-mediated SLR1 degradation
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	The entcopalyl diphosphate synthase (OsCPS) genes, which encode enzymes at the branch point between GA and phytoalexin biosynthesis, were expressed differentially in gid1 relative to the wild type
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	Specifically, OsCPS1, which encodes an enzyme in the GA biosynthesis pathway, was down-regulated and OsCPS2 and OsCPS4, which encode enzymes in phytoalexin biosynthesis, were up-regulated in gid1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	These results suggest that the expression of PBZ1 is regulated by GA signalling and stress stimuli, and that gid1 is involved in tolerance to cold stress and resistance to blast fungus
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	When the gibberellin (GA) receptor GIBBERELLIN INSENSITIVE DWARF 1 (GID1) binds to GA, GID1 interacts with DELLA proteins, repressors of GA signaling
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin	GIBBERELLIN INSENSITIVE DWARF1 (GID1) encodes a soluble gibberellin (GA) receptor that shares sequence similarity with a hormone-sensitive lipase (HSL)
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	blast	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	In addition, gid1 showed increased tolerance to cold stress and resistance to blast fungus infection
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	blast	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	These results suggest that the expression of PBZ1 is regulated by GA signalling and stress stimuli, and that gid1 is involved in tolerance to cold stress and resistance to blast fungus
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	cold stress	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	In addition, gid1 showed increased tolerance to cold stress and resistance to blast fungus infection
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	cold stress	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	These results suggest that the expression of PBZ1 is regulated by GA signalling and stress stimuli, and that gid1 is involved in tolerance to cold stress and resistance to blast fungus
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	cold stress	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin	Together, our results indicate that GID1 is a soluble receptor mediating GA signalling in rice
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	A recessive gibberellin (GA)-insensitive dwarf mutant of rice, gibberellin-insensitive dwarf1 (gid1), has been identified, which shows a severe dwarf phenotype and contains high concentrations of endogenous GA
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	shoot	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor, GID1, and DELLA proteins	To investigate gibberellin (GA) signaling using the rice (Oryza sativa) GA receptor GIBBERELLIN-INSENSITIVE DWARF1 (GID1) mutant gid1-8, we isolated a suppressor mutant, Suppressor of gid1-1 (Sgd-1)
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor, GID1, and DELLA proteins	A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor, GID1, and DELLA proteins
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	When the gibberellin (GA) receptor GIBBERELLIN INSENSITIVE DWARF 1 (GID1) binds to GA, GID1 interacts with DELLA proteins, repressors of GA signaling
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	This activity was suppressed by the GA-dependent GID1-SLR1 interaction, which may explain why GA responses are induced in the presence of GA
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	Our results indicate that the N-terminal region of SLR1 has two roles in GA signaling: interaction with GID1 and transactivation activity
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	gibberellin	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	When the gibberellin (GA) receptor GIBBERELLIN INSENSITIVE DWARF 1 (GID1) binds to GA, GID1 interacts with DELLA proteins, repressors of GA signaling
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	The level of SLR1 protein in gid2 was decreased by loss of GID1 function or treatment with a GA biosynthesis inhibitor, and dwarfism was enhanced
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	These results indicate that derepression of SLR1 repressive activity can be accomplished by GA and GID1 alone and does not require F-box (GID2) function
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	Evidence for GA signaling without GID2 was also provided by the expression behavior of GA-regulated genes such as GA-20oxidase1, GID1, and SLR1 in the gid2 mutant
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	dwarf	GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin	Here we report the isolation and characterization of a new GA-insensitive dwarf mutant of rice, gid1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations	In rice, the initial GA-signaling events involve the binding of a GA to the soluble GA receptor protein, GID1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations	Herein, we present a study aimed at defining the types of forces important to binding via a combination of isothermal titration calorimetry (ITC) and computational docking studies that employed rice GID1 (OsGID1), OsGID1 mutants, which were designed to have a decreased possible number of hydrogen bonds with bound GA, and GA variants
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations	We find that, in general, GA binding is enthalpically driven and that a hydrogen bond between the phenolic hydroxyl of OsGID1 Tyr134 and the C-3 hydroxyl of a GA is a defining structural element
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	submergence	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	submergence	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Interestingly, the gid1 mutant had increased levels of chlorophyll and carbohydrates under submergence condition, and showed enhanced ROS-scavenging ability and submergence tolerance compared with the wild-type
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	submergence	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Further analyses suggested that the function of GID1 in submergence responses is partially dependent on ABA, and GA signaling by GID1 is involved in submergence tolerance by modulating carbohydrate consumption
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	submergence	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Taken together, these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	drought	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	The gid1 mutant showed impaired biosynthesis of endogenous ABA under drought stress condition, but it exhibited enhanced sensitivity to exogenous ABA
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	drought	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Scanning electron microscope and infrared thermal image analysis indicated an increase in the stomatal conductance in the gid1 mutant under drought condition
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ABA 	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ABA 	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	The gid1 mutant showed impaired biosynthesis of endogenous ABA under drought stress condition, but it exhibited enhanced sensitivity to exogenous ABA
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ABA 	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Taken together, these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	tolerance	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	tolerance	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Interestingly, the gid1 mutant had increased levels of chlorophyll and carbohydrates under submergence condition, and showed enhanced ROS-scavenging ability and submergence tolerance compared with the wild-type
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	tolerance	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Further analyses suggested that the function of GID1 in submergence responses is partially dependent on ABA, and GA signaling by GID1 is involved in submergence tolerance by modulating carbohydrate consumption
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	tolerance	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Taken together, these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	stress	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	The gid1 mutant showed impaired biosynthesis of endogenous ABA under drought stress condition, but it exhibited enhanced sensitivity to exogenous ABA
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Further analyses suggested that the function of GID1 in submergence responses is partially dependent on ABA, and GA signaling by GID1 is involved in submergence tolerance by modulating carbohydrate consumption
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Taken together, these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	GA	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	GA	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Further analyses suggested that the function of GID1 in submergence responses is partially dependent on ABA, and GA signaling by GID1 is involved in submergence tolerance by modulating carbohydrate consumption
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	GA	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Taken together, these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	stomatal	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	stomatal	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Scanning electron microscope and infrared thermal image analysis indicated an increase in the stomatal conductance in the gid1 mutant under drought condition
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	stomatal	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Taken together, these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	ABA	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	ABA	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	The gid1 mutant showed impaired biosynthesis of endogenous ABA under drought stress condition, but it exhibited enhanced sensitivity to exogenous ABA
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	ABA	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Taken together, these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	submergence tolerance	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	submergence tolerance	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Interestingly, the gid1 mutant had increased levels of chlorophyll and carbohydrates under submergence condition, and showed enhanced ROS-scavenging ability and submergence tolerance compared with the wild-type
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	submergence tolerance	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Further analyses suggested that the function of GID1 in submergence responses is partially dependent on ABA, and GA signaling by GID1 is involved in submergence tolerance by modulating carbohydrate consumption
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	submergence tolerance	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	Taken together, these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	drought stress	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	The gid1 mutant showed impaired biosynthesis of endogenous ABA under drought stress condition, but it exhibited enhanced sensitivity to exogenous ABA
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	drought stress 	GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	The gid1 mutant showed impaired biosynthesis of endogenous ABA under drought stress condition, but it exhibited enhanced sensitivity to exogenous ABA
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	resistance	Overexpression of OsGID1 Enhances the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	Overexpression of OsGID1 Enhances the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	ethylene	Overexpression of OsGID1 Enhances the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	 The overexpression of OsGID1 (oe-GID1) decreased BPH-induced levels of SA, H<U+2082>O<U+2082>, and three SA-pathway-related WRKY transcripts, but enhanced BPH-induced levels of ethylene
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	brown planthopper	Overexpression of OsGID1 Enhances the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	Overexpression of OsGID1 Enhances the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	ga	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	 Viral proteins encoded by different types of rice viruses all directly trigger the rapid degradation of SLR1 by promoting association with the GA receptor OsGID1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	 ga 	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	 Viral proteins encoded by different types of rice viruses all directly trigger the rapid degradation of SLR1 by promoting association with the GA receptor OsGID1
GID1|OsGID1	Os05g0407500	LOC_Os05g33730	GA	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	 Viral proteins encoded by different types of rice viruses all directly trigger the rapid degradation of SLR1 by promoting association with the GA receptor OsGID1
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	domestication	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication	We previously demonstrated that the rice cell-wall invertase (CWI) gene GIF1 that plays an important role in the grain-filling process was most likely subjected to domestication selection in the promoter region
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	domestication	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication	Results based on analyses of population genetics and gene phylogenetic tree of 25 cultivars and 25 wild rice sequences demonstrated that OsCIN1 was also artificially selected during rice domestication with a fixed mutation in the coding region, in contrast to GIF1 that was selected in the promoter region
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	domestication	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	Control of rice grain-filling and yield by a gene with a potential signature of domestication	Here we report the isolation and functional analysis of the rice GIF1 (GRAIN INCOMPLETE FILLING 1) gene that encodes a cell-wall invertase required for carbon partitioning during early grain-filling
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	Control of rice grain-filling and yield by a gene with a potential signature of domestication	The cultivated GIF1 gene shows a restricted expression pattern during grain-filling compared to the wild rice allele, probably a result of accumulated mutations in the gene's regulatory sequence through domestication
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	Control of rice grain-filling and yield by a gene with a potential signature of domestication	Fine mapping with introgression lines revealed that the wild rice GIF1 is responsible for grain weight reduction
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	Control of rice grain-filling and yield by a gene with a potential signature of domestication	Ectopic expression of the cultivated GIF1 gene with the 35S or rice Waxy promoter resulted in smaller grains, whereas overexpression of GIF1 driven by its native promoter increased grain production
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	homeostasis	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice	Taken together, our study reveals that sugar homeostasis mediated by GIF1 plays an important role in constitutive and induced physical and chemical defence
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	homeostasis	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	domestication	Control of rice grain-filling and yield by a gene with a potential signature of domestication	The cultivated GIF1 gene shows a restricted expression pattern during grain-filling compared to the wild rice allele, probably a result of accumulated mutations in the gene's regulatory sequence through domestication
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	domestication	Control of rice grain-filling and yield by a gene with a potential signature of domestication	These findings, together with the domestication signature that we identified by comparing nucleotide diversity of the GIF1 loci between cultivated and wild rice, strongly suggest that GIF1 is a potential domestication gene and that such a domestication-selected gene can be used for further crop improvement
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain weight	Control of rice grain-filling and yield by a gene with a potential signature of domestication	Fine mapping with introgression lines revealed that the wild rice GIF1 is responsible for grain weight reduction
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication	We previously demonstrated that the rice cell-wall invertase (CWI) gene GIF1 that plays an important role in the grain-filling process was most likely subjected to domestication selection in the promoter region
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice	In this study, we observed that the grains of gif1, a loss-of-function mutant of the cell wall invertase gene GRAIN INCOMPLETE FILLING 1 (GIF1), were hypersusceptible to postharvest fungal pathogens, with decreased levels of sugars and a thinner glume cell wall in comparison with the wild-type
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	cell wall	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice	In this study, we observed that the grains of gif1, a loss-of-function mutant of the cell wall invertase gene GRAIN INCOMPLETE FILLING 1 (GIF1), were hypersusceptible to postharvest fungal pathogens, with decreased levels of sugars and a thinner glume cell wall in comparison with the wild-type
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	cell wall	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice	Moreover, the cell wall was much thicker in the infection sites of the GIF1-OE plants when compared with the wild-type plants
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	cell wall	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	We previously showed that upregulation of OsGIF1 expression improves rice grain size
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Overexpression and functional knock-out via a CRISPR/Cas9 strategy revealed that OsGIF1 not only positively regulates the sizes of rice leaf, stem, and grain but also influences rice reproduction
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	development	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Expression profiles based on both qRT-PCR and GUS (glucuronidase) histochemical staining suggested that OsGIF1 is differentially expressed across various rice tissues, consistent with its roles in regulating the development of multiple rice organs
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain size	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	We previously showed that upregulation of OsGIF1 expression improves rice grain size
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	vegetative	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Our results suggest that OsGIF1 plays important roles in vegetative and reproductive developmental processes, with important implications for rice breeding
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	reproductive	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Our results suggest that OsGIF1 plays important roles in vegetative and reproductive developmental processes, with important implications for rice breeding
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	breeding	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Our results suggest that OsGIF1 plays important roles in vegetative and reproductive developmental processes, with important implications for rice breeding
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	organ size	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Here, we report pleiotropic effects of OsGIF1 on rice organ size regulation
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	organ size	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Further histological analysis suggested that OsGIF1 affected rice organ size possibly by regulating cell size
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	reproductive development	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Our results suggest that OsGIF1 plays important roles in vegetative and reproductive developmental processes, with important implications for rice breeding
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Representative of the white-belly phenotype, grains of wb1 showed a higher grain chalkiness rate and degree and a lower 1000-grain weight (decreased by ~34%), in comparison with that of Wild Type (WT)
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	development	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Nipponbare demonstrates that WB1 regulates endosperm development and that different mutations of WB1 disrupt its biological function
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	starch	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	The wb1 mutant develops a white-belly endosperm and abnormal starch granules in the inner portion of white grains
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	endosperm	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Here, we report the isolation and characterization of a recessive mutation of White Belly 1 (WB1), which regulates rice endosperm development, using a modified MutMap method in the rice mutant wb1
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	endosperm	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	The wb1 mutant develops a white-belly endosperm and abnormal starch granules in the inner portion of white grains
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	endosperm	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Transcript levels analysis of all candidate genes showed that WB1 (Os04t0413500), encoding a cell-wall invertase, was the most probable cause of white-belly endosperm phenotype
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	endosperm	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Nipponbare demonstrates that WB1 regulates endosperm development and that different mutations of WB1 disrupt its biological function
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	chalkiness	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Representative of the white-belly phenotype, grains of wb1 showed a higher grain chalkiness rate and degree and a lower 1000-grain weight (decreased by ~34%), in comparison with that of Wild Type (WT)
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	grain weight	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Representative of the white-belly phenotype, grains of wb1 showed a higher grain chalkiness rate and degree and a lower 1000-grain weight (decreased by ~34%), in comparison with that of Wild Type (WT)
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	endosperm development	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Here, we report the isolation and characterization of a recessive mutation of White Belly 1 (WB1), which regulates rice endosperm development, using a modified MutMap method in the rice mutant wb1
GIF1|OsCIN2|OsGIF1|WB1	Os04g0413500	LOC_Os04g33740	endosperm development	WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Nipponbare demonstrates that WB1 regulates endosperm development and that different mutations of WB1 disrupt its biological function
GL12	Os12g0586300	LOC_Os12g39640	grain	A novel QTL GL12 from wild rice increases grain length and weight in cultivated rice	A novel QTL GL12 from wild rice increases grain length and weight in cultivated rice
GL12	Os12g0586300	LOC_Os12g39640	grain length	A novel QTL GL12 from wild rice increases grain length and weight in cultivated rice	A novel QTL GL12 from wild rice increases grain length and weight in cultivated rice
GL12	Os12g0586300	LOC_Os12g39640	grain weight	A novel QTL GL12 from wild rice increases grain length and weight in cultivated rice	A novel QTL GL12 from wild rice increases grain length and weight in cultivated rice
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain length	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Here, we report the cloning and functional characterization of a major grain length QTL, qGL3, which encodes a putative protein phosphatase with Kelch-like repeat domain (OsPPKL1)
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain length	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Transgenic studies showed that OsPPKL1 and OsPPKL3 function as negative regulators of grain length, whereas OsPPKL2 as a positive regulator
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain length	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain yield	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Field trials showed that the application of the qgl3 allele could significantly increase grain yield in both inbred and hybrid rice varieties, due to its favorable effect on grain length, filling, and weight
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain length	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Here, we report the cloning and functional characterization of a major grain length QTL, qGL3, which encodes a putative protein phosphatase with Kelch-like repeat domain (OsPPKL1)
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain length	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Field trials showed that the application of the qgl3 allele could significantly increase grain yield in both inbred and hybrid rice varieties, due to its favorable effect on grain length, filling, and weight
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Here, we report the cloning and functional characterization of a major grain length QTL, qGL3, which encodes a putative protein phosphatase with Kelch-like repeat domain (OsPPKL1)
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	We found a rare allele qgl3 that leads to a long grain phenotype by an aspartate-to-glutamate transition in a conserved AVLDT motif of the second Kelch domain in OsPPKL1
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Field trials showed that the application of the qgl3 allele could significantly increase grain yield in both inbred and hybrid rice varieties, due to its favorable effect on grain length, filling, and weight
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain length	A Kelch motif-containing serine/threonine protein phosphatase determines the large grain QTL trait in rice	In particular, qGL3-1, a newly-identified grain length QTL with the highest LOD value and largest phenotypic variation, was fine-mapped to the 17 kb region of chromosome 3
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	yield	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	A Kelch motif-containing serine/threonine protein phosphatase determines the large grain QTL trait in rice	In particular, qGL3-1, a newly-identified grain length QTL with the highest LOD value and largest phenotypic variation, was fine-mapped to the 17 kb region of chromosome 3
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain size	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	yield	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Here, we report the cloning and functional characterization of a major grain length QTL, qGL3, which encodes a putative protein phosphatase with Kelch-like repeat domain (OsPPKL1)
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	We found a rare allele qgl3 that leads to a long grain phenotype by an aspartate-to-glutamate transition in a conserved AVLDT motif of the second Kelch domain in OsPPKL1
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Transgenic studies showed that OsPPKL1 and OsPPKL3 function as negative regulators of grain length, whereas OsPPKL2 as a positive regulator
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	yield	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Field trials showed that the application of the qgl3 allele could significantly increase grain yield in both inbred and hybrid rice varieties, due to its favorable effect on grain length, filling, and weight
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	panicle	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	Comparative analysis of primary panicle transcriptomes in the four NILs revealed that the genes affected by GS3 and qGL3 partially overlapped, and both loci might be involved in brassinosteroid signaling
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	By comparing the grain lengths of 93-11, NIL-GS3, NIL-qgl3 and NIL-GS3/qgl3, we investigated the effects of GS3, qGL3 and GS3 × qGL3 interaction on grain length based on two-way ANOVA
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	We found that GS3 and qGL3 had additive effects on rice grain length regulation
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain length	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain length	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	By comparing the grain lengths of 93-11, NIL-GS3, NIL-qgl3 and NIL-GS3/qgl3, we investigated the effects of GS3, qGL3 and GS3 × qGL3 interaction on grain length based on two-way ANOVA
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	grain length	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	We found that GS3 and qGL3 had additive effects on rice grain length regulation
GL3.1|qGL3-1|qGL3|OsPPKL1	Os03g0646900	LOC_Os03g44500	brassinosteroid	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	Comparative analysis of primary panicle transcriptomes in the four NILs revealed that the genes affected by GS3 and qGL3 partially overlapped, and both loci might be involved in brassinosteroid signaling
GL3.2	Os03g0417700	LOC_Os03g30420	grain growth	Variations in CYP78A13 coding region influence grain size and yield in rice	Sequence search revealed that CYP78A13 has a paralogue Grain<U+2005>Length 3.2 (GL3.2, LOC_Os03g30420) in rice with distinct expression patterns, analysis of transgenic plants harbouring either CYP78A13 or GL3.2 showed that both can promote grain growth.
GL3.2	Os03g0417700	LOC_Os03g30420	growth	Variations in CYP78A13 coding region influence grain size and yield in rice	Sequence search revealed that CYP78A13 has a paralogue Grain<U+2005>Length 3.2 (GL3.2, LOC_Os03g30420) in rice with distinct expression patterns, analysis of transgenic plants harbouring either CYP78A13 or GL3.2 showed that both can promote grain growth.
GL3.2	Os03g0417700	LOC_Os03g30420	growth	Variations in CYP78A13 coding region influence grain size and yield in rice	Both CYP78A13 and GL3.2 promote seed growth in rice
GL3.2	Os03g0417700	LOC_Os03g30420	seed growth	Variations in CYP78A13 coding region influence grain size and yield in rice	Both CYP78A13 and GL3.2 promote seed growth in rice
GL3.2	Os03g0417700	LOC_Os03g30420	grain length	Variations in CYP78A13 coding region influence grain size and yield in rice	It was predicted that CYP78A13 was associated with grain width, while another P450 paralogue located on chromosome 3, LOC_Os03g30420, which we named Grain Length3.2 (GL3.2), was associated with grain length
GL3.2	Os03g0417700	LOC_Os03g30420	grain size	Variations in CYP78A13 coding region influence grain size and yield in rice	Overexpression of CYP78A13 and GL3.2 both resulted in enlarged grain sizes.
GL6|SG6	Os06g0666100	LOC_Os06g45540	transcription factor	The PLATZ transcription factor GL6 affects grain length and number in rice.	The PLATZ transcription factor GL6 affects grain length and number in rice.
GL6|SG6	Os06g0666100	LOC_Os06g45540	panicle	The PLATZ transcription factor GL6 affects grain length and number in rice.	The null gl6 mutant possesses short grains, whereas overexpression of GL6 results in large grains and decreased grain number per panicle
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain	The PLATZ transcription factor GL6 affects grain length and number in rice.	The PLATZ transcription factor GL6 affects grain length and number in rice.
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain	The PLATZ transcription factor GL6 affects grain length and number in rice.	GL6 positively controls grain length by promoting cell proliferation in young panicles and grains
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain	The PLATZ transcription factor GL6 affects grain length and number in rice.	The null gl6 mutant possesses short grains, whereas overexpression of GL6 results in large grains and decreased grain number per panicle
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain	The PLATZ transcription factor GL6 affects grain length and number in rice.	We demonstrate that GL6 participates in RNA polymerase III (RNAPIII) transcription machinery by interacting with RPC53 and TFC1 to regulate the expression of genes involved in rice grain development
GL6|SG6	Os06g0666100	LOC_Os06g45540	development	The PLATZ transcription factor GL6 affects grain length and number in rice.	We demonstrate that GL6 participates in RNA polymerase III (RNAPIII) transcription machinery by interacting with RPC53 and TFC1 to regulate the expression of genes involved in rice grain development
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain number	The PLATZ transcription factor GL6 affects grain length and number in rice.	The null gl6 mutant possesses short grains, whereas overexpression of GL6 results in large grains and decreased grain number per panicle
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain length	The PLATZ transcription factor GL6 affects grain length and number in rice.	The PLATZ transcription factor GL6 affects grain length and number in rice.
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain length	The PLATZ transcription factor GL6 affects grain length and number in rice.	GL6 positively controls grain length by promoting cell proliferation in young panicles and grains
GL6|SG6	Os06g0666100	LOC_Os06g45540	cell proliferation	The PLATZ transcription factor GL6 affects grain length and number in rice.	GL6 positively controls grain length by promoting cell proliferation in young panicles and grains
GL6|SG6	Os06g0666100	LOC_Os06g45540	spikelet	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	Here, we functionally characterized the role of SG6 in determining grain size through the regulation of spikelet hull cell division
GL6|SG6	Os06g0666100	LOC_Os06g45540	spikelet	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	The overexpression of SG6 resulted in significantly larger and heavier grains, as well as increased plant heights, which is consistent with its elevated spikelet hull cell division rate
GL6|SG6	Os06g0666100	LOC_Os06g45540	spikelet	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	These results confirm the crucial role of SG6 in determining grain size by regulating spikelet hull cell division and provide clues for understanding the functions of PLATZ family proteins and the network regulating cereal grain size
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	Here, we functionally characterized the role of SG6 in determining grain size through the regulation of spikelet hull cell division
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	These results confirm the crucial role of SG6 in determining grain size by regulating spikelet hull cell division and provide clues for understanding the functions of PLATZ family proteins and the network regulating cereal grain size
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain size	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	Here, we functionally characterized the role of SG6 in determining grain size through the regulation of spikelet hull cell division
GL6|SG6	Os06g0666100	LOC_Os06g45540	grain size	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	These results confirm the crucial role of SG6 in determining grain size by regulating spikelet hull cell division and provide clues for understanding the functions of PLATZ family proteins and the network regulating cereal grain size
GL6|SG6	Os06g0666100	LOC_Os06g45540	cell division	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	Here, we functionally characterized the role of SG6 in determining grain size through the regulation of spikelet hull cell division
GL6|SG6	Os06g0666100	LOC_Os06g45540	cell division	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	The overexpression of SG6 resulted in significantly larger and heavier grains, as well as increased plant heights, which is consistent with its elevated spikelet hull cell division rate
GL6|SG6	Os06g0666100	LOC_Os06g45540	cell division	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	Yeast two-hybrid analyses revealed that SG6 interacts with the core cell cycle machinery DP protein and several other putative cell division regulators, consistent with our transcriptomic analysis, which showed that SG6 activates the expression of many DNA replication and cell-cycle-related genes
GL6|SG6	Os06g0666100	LOC_Os06g45540	cell division	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	These results confirm the crucial role of SG6 in determining grain size by regulating spikelet hull cell division and provide clues for understanding the functions of PLATZ family proteins and the network regulating cereal grain size
GL6|SG6	Os06g0666100	LOC_Os06g45540	endosperm	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	SG6 encodes a previously uncharacterized PLATZ (plant AT-rich sequence and zinc-binding) protein that is ubiquitously localized throughout the cell and is preferentially expressed in the early developing panicles but not in the endosperm
GL6|SG6	Os06g0666100	LOC_Os06g45540	cell cycle	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	Yeast two-hybrid analyses revealed that SG6 interacts with the core cell cycle machinery DP protein and several other putative cell division regulators, consistent with our transcriptomic analysis, which showed that SG6 activates the expression of many DNA replication and cell-cycle-related genes
GL6|SG6	Os06g0666100	LOC_Os06g45540	plant height	The rice PLATZ protein SHORT GRAIN6 determines grain size by regulating spikelet hull cell division.	The overexpression of SG6 resulted in significantly larger and heavier grains, as well as increased plant heights, which is consistent with its elevated spikelet hull cell division rate
GLB1	Os05g0499100	LOC_Os05g41970	Fe	Iron biofortification in rice by the introduction of multiple genes involved in iron nutrition	Moreover, ferritin expressed under the control of the OsGlb1 promoter and the OsGluB1 promoter accumulates Fe in seed endosperm cells.
GLB1	Os05g0499100	LOC_Os05g41970	seed	Iron biofortification in rice by the introduction of multiple genes involved in iron nutrition	Moreover, ferritin expressed under the control of the OsGlb1 promoter and the OsGluB1 promoter accumulates Fe in seed endosperm cells.
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	grain	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	The results indicate that GS1;1 is important for normal growth and grain filling in rice; GS1;2 and GS1;3 were not able to compensate for GS1;1 function
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	nitrogen	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	grain	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	growth	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	The results indicate that GS1;1 is important for normal growth and grain filling in rice; GS1;2 and GS1;3 were not able to compensate for GS1;1 function
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	seed	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	nitrogen	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	By contrast, OsGLN1;2 was abundantly expressed in the same cell layers under nitrogen-sufficient conditions, replenishing the loss of OsGLN1;1 following ammonium treatment
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	root	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	OsGS1;1 was expressed in all organs tested with higher expression in leaf blades, while OsGS1;2, and OsGS1;3 were expressed mainly in roots and spikelets, respectively
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	root	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	Among the three isoenzymes of the cytosolic GS1 gene family in rice, OsGLN1;1 and OsGLN1;2 were abundantly expressed in roots
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	root	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	Low-affinity forms of GS1 comparable to those in Arabidopsis (GLN1;2 and GLN1;3) were absent in rice roots
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	root	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	The OsGLN1;1 and OsGLN1;2 transcripts showed reciprocal responses to ammonium supply in the surface cell layers of roots
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	root	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	The high-capacity Gln synthetic activities of OsGLN1;1 and OsGLN1;2 facilitate active ammonium assimilation in specific cell types in rice roots
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	grain filling	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	spikelet	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	OsGS1;1 was expressed in all organs tested with higher expression in leaf blades, while OsGS1;2, and OsGS1;3 were expressed mainly in roots and spikelets, respectively
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	root	Assimilation of ammonium ions and reutilization of nitrogen in rice (Oryza sativa L.)	Although a small gene family for both GS and GOGAT is present in rice, ammonium-dependent and cell type-specific expression suggest that cytosolic GS1;2 and plastidic NADH-GOGAT1 are responsible for the primary assimilation of ammonium ions in the roots
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	leaf	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	OsGS1;1 was expressed in all organs tested with higher expression in leaf blades, while OsGS1;2, and OsGS1;3 were expressed mainly in roots and spikelets, respectively
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	grain filling	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	The results indicate that GS1;1 is important for normal growth and grain filling in rice; GS1;2 and GS1;3 were not able to compensate for GS1;1 function
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	tiller	Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.	Although a high content of strigolactone in rice roots is known to reduce active tiller number, the reduction of outgrowth of axillary buds observed in the GS1;2 mutants was independent of the level of strigolactone
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	nitrogen	Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.	Transcriptomic analysis using a 5 mm basal region of rice shoots showed that the GS1;2 mutants accumulated reduced amounts of mRNAs for carbon and nitrogen metabolism, including C1 unit transfer in lignin synthesis
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	strigolactone	Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.	Although a high content of strigolactone in rice roots is known to reduce active tiller number, the reduction of outgrowth of axillary buds observed in the GS1;2 mutants was independent of the level of strigolactone
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	tiller number	Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.	Although a high content of strigolactone in rice roots is known to reduce active tiller number, the reduction of outgrowth of axillary buds observed in the GS1;2 mutants was independent of the level of strigolactone
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	lignin	Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.	The lack of GS1;2 resulted in reduced accumulation of lignin
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	lignin	Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.	Transcriptomic analysis using a 5 mm basal region of rice shoots showed that the GS1;2 mutants accumulated reduced amounts of mRNAs for carbon and nitrogen metabolism, including C1 unit transfer in lignin synthesis
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	lignin	Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.	Thus metabolic disorder caused by the lack of GS1;2 resulted in a severe reduction in the outgrowth of axillary buds and lignin deposition
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	development	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	Thus, organic N assimilated by OsGS1;1 affects a broad range of metabolites and transcripts involved in maintaining metabolic homeostasis and plastid development in rice roots, whereas OsGS1;2 has a more specific role, affecting mainly amino acid homeostasis but not C metabolism
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	photosynthesis	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	We observed (i) abnormal sugar and organic N accumulation and (ii) significant upregulation of genes associated with photosynthesis and chlorophyll biosynthesis in the roots of Osgs1;1 but not Osgs1;2 knockout mutants
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	homeostasis	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	Thus, organic N assimilated by OsGS1;1 affects a broad range of metabolites and transcripts involved in maintaining metabolic homeostasis and plastid development in rice roots, whereas OsGS1;2 has a more specific role, affecting mainly amino acid homeostasis but not C metabolism
GLN1;2|GS1;2|OsGS1;2	Os03g0223400	LOC_Os03g12290	sugar	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	We observed (i) abnormal sugar and organic N accumulation and (ii) significant upregulation of genes associated with photosynthesis and chlorophyll biosynthesis in the roots of Osgs1;1 but not Osgs1;2 knockout mutants
GLO1	Os03g0786100	LOC_Os03g57220	defense	Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice	Silencing of GLO1 results in enhanced resistance to Xoo, increased expression of defense regulators NH1, NH3, and WRKY45, and activation of PR1 expression
GLO1	Os03g0786100	LOC_Os03g57220	transcription factor	Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice	We previously described identification of rice GLO1 that interacts with a glutaredoxin protein, which in turn interacts with TGA transcription factors
GLO1	Os03g0786100	LOC_Os03g57220	root	Glycolate oxidase isozymes are coordinately controlled by GLO1 and GLO4 in rice	GLO1 and GLO4 are predominately expressed in rice leaves, while GLO3 and GLO5 are mainly expressed in the root
GLO1	Os03g0786100	LOC_Os03g57220	cell death	Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice	Constitutive silencing of GLO1 leads to programmed cell death, resulting in a lesion-mimic phenotype and lethality or reduced plant growth and development, consistent with previous reports
GLO1	Os03g0786100	LOC_Os03g57220	growth	Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice	Constitutive silencing of GLO1 leads to programmed cell death, resulting in a lesion-mimic phenotype and lethality or reduced plant growth and development, consistent with previous reports
GLO3	Os07g0152900	LOC_Os07g05820	root	Glycolate oxidase isozymes are coordinately controlled by GLO1 and GLO4 in rice	GLO1 and GLO4 are predominately expressed in rice leaves, while GLO3 and GLO5 are mainly expressed in the root
GLO4	Os07g0616500	LOC_Os07g42440	root	Glycolate oxidase isozymes are coordinately controlled by GLO1 and GLO4 in rice	GLO1 and GLO4 are predominately expressed in rice leaves, while GLO3 and GLO5 are mainly expressed in the root
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	breeding	Glabrous Rice 1, encoding a homeodomain protein, regulates trichome development in rice	CONCLUSION: GLR1 plays an important role in rice trichome development and will contribute to breeding of glabrous elite rice varieties
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	leaf	Hairy Leaf 6, an AP2/ERF transcription factor, interacts with OsWOX3B and regulates trichome formation in rice.	Hairy Leaf 6, an AP2/ERF transcription factor, interacts with OsWOX3B and regulates trichome formation in rice.
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	transcription factor	Hairy Leaf 6, an AP2/ERF transcription factor, interacts with OsWOX3B and regulates trichome formation in rice.	Hairy Leaf 6, an AP2/ERF transcription factor, interacts with OsWOX3B and regulates trichome formation in rice.
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	leaf	LEAF LATERAL SYMMETRY1, a member of the WUSCHEL-RELATED HOMEOBOX3 gene family, regulates lateral outgrowth of leaves in rice.	A loss-of-function mutant of LSY1 exhibited an asymmetrical defect from early leaf development, which is different from a symmetric defect in a double loss-of-function mutant of NAL2/3, whereas the expression of both genes was observed in a similar domain in the margins of leaf primordia
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	leaf	LEAF LATERAL SYMMETRY1, a member of the WUSCHEL-RELATED HOMEOBOX3 gene family, regulates lateral outgrowth of leaves in rice.	Expression domains and the level of adaxial/abaxial marker genes were affected in the LSY1 overexpressing plants, indicating that LSY1 is involved in regulation of adaxial/abaxial patterning at the margins of the leaf primordia
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	leaf	LEAF LATERAL SYMMETRY1, a member of the WUSCHEL-RELATED HOMEOBOX3 gene family, regulates lateral outgrowth of leaves in rice.	Additive phenotypes in some leaf traits of lsy1 nal2/3 triple mutants and the unchanged level of NAL2/3 expression in the lsy1 background suggested that LSY1 regulates lateral leaf development independently of NAL2/3
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	leaf	LEAF LATERAL SYMMETRY1, a member of the WUSCHEL-RELATED HOMEOBOX3 gene family, regulates lateral outgrowth of leaves in rice.	Our results indicated that all of the rice WOX3 genes are involved in leaf lateral outgrowth, but the functions of LSY1 and NAL2/3 have diverged
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	leaf development	LEAF LATERAL SYMMETRY1, a member of the WUSCHEL-RELATED HOMEOBOX3 gene family, regulates lateral outgrowth of leaves in rice.	A loss-of-function mutant of LSY1 exhibited an asymmetrical defect from early leaf development, which is different from a symmetric defect in a double loss-of-function mutant of NAL2/3, whereas the expression of both genes was observed in a similar domain in the margins of leaf primordia
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	leaf development	LEAF LATERAL SYMMETRY1, a member of the WUSCHEL-RELATED HOMEOBOX3 gene family, regulates lateral outgrowth of leaves in rice.	Additive phenotypes in some leaf traits of lsy1 nal2/3 triple mutants and the unchanged level of NAL2/3 expression in the lsy1 background suggested that LSY1 regulates lateral leaf development independently of NAL2/3
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	development	LEAF LATERAL SYMMETRY1, a member of the WUSCHEL-RELATED HOMEOBOX3 gene family, regulates lateral outgrowth of leaves in rice.	Additive phenotypes in some leaf traits of lsy1 nal2/3 triple mutants and the unchanged level of NAL2/3 expression in the lsy1 background suggested that LSY1 regulates lateral leaf development independently of NAL2/3
GLR1|OsWOX3B|GL1|LSY1	Os05g0118700	LOC_Os05g02730	development	Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes	Tests of allelism in 51 glabrous rice (Oryza sativa) accessions collected worldwide identified OsSPL10 and OsWOX3B as regulators of trichome development in rice
GLR3.1	Os04g0585200	LOC_Os04g49570	root apical meristem	A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem.	A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem.
GLR3.1	Os04g0585200	LOC_Os04g49570	root apical meristem	A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem.	Our results supply genetic evidence that a plant Glu receptor-like gene, rice GLR3.1, is essential for the maintenance of cell division and individual cell survival in the root apical meristem at the early seedling stage.
GLR3.1	Os04g0585200	LOC_Os04g49570	cell division	A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem.	Our results supply genetic evidence that a plant Glu receptor-like gene, rice GLR3.1, is essential for the maintenance of cell division and individual cell survival in the root apical meristem at the early seedling stage.
GLR3.1	Os04g0585200	LOC_Os04g49570	seedling	A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem.	Our results supply genetic evidence that a plant Glu receptor-like gene, rice GLR3.1, is essential for the maintenance of cell division and individual cell survival in the root apical meristem at the early seedling stage.
GluA|OsGluA2	Os10g0400200	LOC_Os10g26060	grain	Natural variation of OsGluA2 is involved in grain protein content regulation in rice.	Natural variation of OsGluA2 is involved in grain protein content regulation in rice.
GluA|OsGluA2	Os10g0400200	LOC_Os10g26060	grain protein content	Natural variation of OsGluA2 is involved in grain protein content regulation in rice.	Natural variation of OsGluA2 is involved in grain protein content regulation in rice.
GluA|OsGluA2	Os10g0400200	LOC_Os10g26060	grain protein	Natural variation of OsGluA2 is involved in grain protein content regulation in rice.	Natural variation of OsGluA2 is involved in grain protein content regulation in rice.
GluB-1	Os02g0249900	LOC_Os02g15169	seed	The 3'-untranslated region of rice glutelin GluB-1 affects accumulation of heterologous protein in transgenic rice	Accumulation of mDer f 2 in transgenic seed and leaf using the GluB-1 terminator was greater than when using the Nos terminator construct
GluB-1	Os02g0249900	LOC_Os02g15169	seed	The 3'-untranslated region of rice glutelin GluB-1 affects accumulation of heterologous protein in transgenic rice	The mDer f 2 mRNA containing the GluB-1 3'UTR was processed and polyadenylated at the same sites as the native GluB-1 mRNA in the seeds but diverged in leaves of the transgenic plants
GluB-1	Os02g0249900	LOC_Os02g15169	panicle	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	In this study, we describe a zinc finger gene of the Cys3His1 (CCCH or C3H) class, named OsGZF1, which was identified in a yeast one-hybrid screening using the core promoter region of GluB-1 as bait and cDNA expression libraries prepared from developing rice panicles and grains as prey
GluB-1	Os02g0249900	LOC_Os02g15169	seed	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	The promoter region of GluB-1, one of the glutelin genes in rice, has been intensively used as a model to understand regulation of seed-storage protein accumulation
GluB-1	Os02g0249900	LOC_Os02g15169	seed	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice
GluB-1	Os02g0249900	LOC_Os02g15169	leaf	The 3'-untranslated region of rice glutelin GluB-1 affects accumulation of heterologous protein in transgenic rice	Accumulation of mDer f 2 in transgenic seed and leaf using the GluB-1 terminator was greater than when using the Nos terminator construct
GluB-1	Os02g0249900	LOC_Os02g15169	endosperm	Identification of cis-regulatory elements required for endosperm expression of the rice storage protein glutelin gene GluB-1	Therefore, we conclude that at least three cis-regulatory elements, the AACA motif, GCN4 motif and ACGT motif, are necessary to mediate endosperm expression of the GluB-1 glutelin gene
GluB-1	Os02g0249900	LOC_Os02g15169	endosperm	Identification of cis-regulatory elements required for endosperm expression of the rice storage protein glutelin gene GluB-1	Identification of cis-regulatory elements required for endosperm expression of the rice storage protein glutelin gene GluB-1
GluB-1	Os02g0249900	LOC_Os02g15169	grain	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	In this study, we describe a zinc finger gene of the Cys3His1 (CCCH or C3H) class, named OsGZF1, which was identified in a yeast one-hybrid screening using the core promoter region of GluB-1 as bait and cDNA expression libraries prepared from developing rice panicles and grains as prey
GluB-1	Os02g0249900	LOC_Os02g15169	grain	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	We propose that OsGZF1 has a function in regulating the GluB-1 promoter and controls accumulation of glutelins during grain development
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	cell death	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	growth	Vacuolar processing enzyme plays an essential role in the crystalline structure of glutelin in rice seed	Growth retardation in glup3 seedlings was also observed, indicating that the processing of proglutelin influences early seedling development
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	seed	Vacuolar processing enzyme plays an essential role in the crystalline structure of glutelin in rice seed	VPE activity in developing seeds from glup3 lines was reduced remarkably compared with the wild type
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	seed	Vacuolar processing enzyme plays an essential role in the crystalline structure of glutelin in rice seed	Growth retardation in glup3 seedlings was also observed, indicating that the processing of proglutelin influences early seedling development
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	seedling	Vacuolar processing enzyme plays an essential role in the crystalline structure of glutelin in rice seed	Growth retardation in glup3 seedlings was also observed, indicating that the processing of proglutelin influences early seedling development
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	stress	Identification of vacuolar phosphate efflux transporters in land plants.	Vacuolar Pi content was higher in the loss-of-function Osvpe1<U+2009>Osvpe2 double mutant than in wild type, particularly under low-Pi stress
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	Pi	Identification of vacuolar phosphate efflux transporters in land plants.	Vacuolar Pi content was higher in the loss-of-function Osvpe1<U+2009>Osvpe2 double mutant than in wild type, particularly under low-Pi stress
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	Pi	Identification of vacuolar phosphate efflux transporters in land plants.	Overexpression of either OsVPE1 or OsVPE2 in transgenic plants reduced vacuolar Pi content, consistent with a role in vacuolar Pi efflux
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	pi	Identification of vacuolar phosphate efflux transporters in land plants.	Vacuolar Pi content was higher in the loss-of-function Osvpe1<U+2009>Osvpe2 double mutant than in wild type, particularly under low-Pi stress
Glup3|OsVPE1	Os04g0537900	LOC_Os04g45470	pi	Identification of vacuolar phosphate efflux transporters in land plants.	Overexpression of either OsVPE1 or OsVPE2 in transgenic plants reduced vacuolar Pi content, consistent with a role in vacuolar Pi efflux
GLUP6|GEF	Os03g0262900	LOC_Os03g15650	seed	A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm	Overall, our results indicate that GLUP6/GEF is the activator of Rab5 GTPase and that the cycling of GTP- and GDP-bound forms of this regulatory protein is essential for the intracellular transport of proglutelin and alpha-globulin from the Golgi to PSVs and in the maintenance of the general structural organization of the endomembrane system in rice seeds
GLUP6|GEF	Os03g0262900	LOC_Os03g15650	endosperm	A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm	Immunofluorescence studies showed that the transport of proglutelins and alpha-globulins to PSV was disrupted in glup6 endosperm
GLUP6|GEF	Os03g0262900	LOC_Os03g15650	endosperm	A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm	Secreted granules of glutelin and alpha-globulin were readily observed in young glup6 endosperm, followed by the formation of large dilated paramural bodies (PMBs) containing both proteins as the endosperm matures
Gm8	Os08g0249400	LOC_Os08g15080	resistance	Map-based cloning and validation of a gall midge resistance gene, Gm8, encoding a proline-rich protein in the rice variety Aganni.	The indica rice variety Aganni, a landrace from the state of Kerala, is known to carry the gall midge resistance gene Gm8 with HR-type of resistance
Gm8	Os08g0249400	LOC_Os08g15080	resistance	Map-based cloning and validation of a gall midge resistance gene, Gm8, encoding a proline-rich protein in the rice variety Aganni.	Validation of this gene in five gall midge resistant rice varieties carrying different resistance genes revealed that the induction was unique to Aganni rice carrying Gm8 gene
Gm8	Os08g0249400	LOC_Os08g15080	resistant	Map-based cloning and validation of a gall midge resistance gene, Gm8, encoding a proline-rich protein in the rice variety Aganni.	Validation of this gene in five gall midge resistant rice varieties carrying different resistance genes revealed that the induction was unique to Aganni rice carrying Gm8 gene
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cytokinin	Cytokinin oxidase regulates rice grain production	We here show that a QTL that increases grain productivity in rice, Gn1a, is a gene for cytokinin oxidase/dehydrogenase (OsCKX2), an enzyme that degrades the phytohormone cytokinin
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cytokinin	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice	Quantitative real-time PCR results show that OsCKX2, which encodes cytokinin oxidase/dehydrogenase, is down-regulated evidently in mutants, implying that LP might be involved in modulating cytokinin level in plant tissues
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	phytohormone	Cytokinin oxidase regulates rice grain production	We here show that a QTL that increases grain productivity in rice, Gn1a, is a gene for cytokinin oxidase/dehydrogenase (OsCKX2), an enzyme that degrades the phytohormone cytokinin
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	spikelet	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	The expression level of OsCKX2 in the shoot apex of Dn1-1 plants is similar to that in the wild type, indicating that OsCKX2 does not contribute to an increased number of spikelets
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	shoot	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	The expression level of OsCKX2 in the shoot apex of Dn1-1 plants is similar to that in the wild type, indicating that OsCKX2 does not contribute to an increased number of spikelets
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salt	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	branching	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	reproductive	Cytokinin oxidase regulates rice grain production	Reduced expression of OsCKX2 causes cytokinin accumulation in inflorescence meristems and increases the number of reproductive organs, resulting in enhanced grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	breeding	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	) Gn1a/OsCKX2 (Grain number 1a/Cytokinin oxidase 2) gene, which encodes a cytokinin oxidase, has been identified as a major quantitative trait locus contributing to grain number improvement in rice breeding practice
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cytokinin	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	) Gn1a/OsCKX2 (Grain number 1a/Cytokinin oxidase 2) gene, which encodes a cytokinin oxidase, has been identified as a major quantitative trait locus contributing to grain number improvement in rice breeding practice
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	) Gn1a/OsCKX2 (Grain number 1a/Cytokinin oxidase 2) gene, which encodes a cytokinin oxidase, has been identified as a major quantitative trait locus contributing to grain number improvement in rice breeding practice
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Importantly, the DST(reg1) allele provides an approach to pyramid the Gn1a-dependent and Gn1a-independent effects on grain production
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	drought	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Cytokinin oxidase regulates rice grain production	We here show that a QTL that increases grain productivity in rice, Gn1a, is a gene for cytokinin oxidase/dehydrogenase (OsCKX2), an enzyme that degrades the phytohormone cytokinin
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	meristem	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	meristem	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Cytokinin oxidase regulates rice grain production	Reduced expression of OsCKX2 causes cytokinin accumulation in inflorescence meristems and increases the number of reproductive organs, resulting in enhanced grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cytokinin	Cytokinin oxidase regulates rice grain production	Reduced expression of OsCKX2 causes cytokinin accumulation in inflorescence meristems and increases the number of reproductive organs, resulting in enhanced grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salt tolerance	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain yield	Cytokinin oxidase regulates rice grain production	Reduced expression of OsCKX2 causes cytokinin accumulation in inflorescence meristems and increases the number of reproductive organs, resulting in enhanced grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	meristem	Cytokinin oxidase regulates rice grain production	Reduced expression of OsCKX2 causes cytokinin accumulation in inflorescence meristems and increases the number of reproductive organs, resulting in enhanced grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	reproductive	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	reproductive	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	DST-directed expression of OsCKX2 regulates CK accumulation in the SAM and, therefore, controls the number of the reproductive organs
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	reproductive	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	panicle	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	transcription factor	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	Here, we report that the zinc finger transcription factor DROUGHT AND SALT TOLERANCE (DST) directly regulates OsCKX2 expression in the reproductive meristem
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain number	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	) Gn1a/OsCKX2 (Grain number 1a/Cytokinin oxidase 2) gene, which encodes a cytokinin oxidase, has been identified as a major quantitative trait locus contributing to grain number improvement in rice breeding practice
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain number	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression	We identify that DST(reg1), a semidominant allele of the DST gene, perturbs DST-directed regulation of OsCKX2 expression and elevates CK levels in the reproductive SAM, leading to increased meristem activity, enhanced panicle branching, and a consequent increase of grain number
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	yield	Cytokinin oxidase regulates rice grain production	Reduced expression of OsCKX2 causes cytokinin accumulation in inflorescence meristems and increases the number of reproductive organs, resulting in enhanced grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	inflorescence	Cytokinin oxidase regulates rice grain production	Reduced expression of OsCKX2 causes cytokinin accumulation in inflorescence meristems and increases the number of reproductive organs, resulting in enhanced grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	stem	Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield.	Southern blot analysis confirmed the integration of the shRNA genes into the rice genome, and quantitative real time RT-PCR and northern blot analyses showed reduced OsCKX2 expression in the young stem of transgenic rice at varying degrees
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	growth	Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield.	Consistently, insertional activation of OsCKX2 led to increased expression of CKX2 and reduced tiller number and growth in a gene-dosage dependant manner
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	growth	Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield.	Taken together, these results demonstrate that specific suppression of OsCKX2 expression through shRNA-mediated gene silencing leads to enhanced growth and productivity in rice by increasing tiller number and grain weight
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield.	Taken together, these results demonstrate that specific suppression of OsCKX2 expression through shRNA-mediated gene silencing leads to enhanced growth and productivity in rice by increasing tiller number and grain weight
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	tiller	Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield.	Consistently, insertional activation of OsCKX2 led to increased expression of CKX2 and reduced tiller number and growth in a gene-dosage dependant manner
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	tiller	Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield.	Taken together, these results demonstrate that specific suppression of OsCKX2 expression through shRNA-mediated gene silencing leads to enhanced growth and productivity in rice by increasing tiller number and grain weight
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	tiller number	Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield.	Consistently, insertional activation of OsCKX2 led to increased expression of CKX2 and reduced tiller number and growth in a gene-dosage dependant manner
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	tiller number	Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield.	Taken together, these results demonstrate that specific suppression of OsCKX2 expression through shRNA-mediated gene silencing leads to enhanced growth and productivity in rice by increasing tiller number and grain weight
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain weight	Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield.	Taken together, these results demonstrate that specific suppression of OsCKX2 expression through shRNA-mediated gene silencing leads to enhanced growth and productivity in rice by increasing tiller number and grain weight
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions.	Gn1a (OsCKX2), which encodes cytokinin oxidase/dehydrogenase, plays an important role in regulating rice grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain yield	Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions.	Gn1a (OsCKX2), which encodes cytokinin oxidase/dehydrogenase, plays an important role in regulating rice grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	yield	Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions.	Gn1a (OsCKX2), which encodes cytokinin oxidase/dehydrogenase, plays an important role in regulating rice grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cytokinin	Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions.	Gn1a (OsCKX2), which encodes cytokinin oxidase/dehydrogenase, plays an important role in regulating rice grain yield
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	breeding	Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions.	It might be valuable to explore the high-yield-related alleles of Gn1a to develop high-yield rice cultivars in future breeding programs
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	panicle	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	Importantly, we found a negative-correlation between OsCKX2 expression and plant productivity as evident by assessment of agronomical parameters such as panicle branching, filled grains per plant, and harvest index both under control and salinity stress conditions
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	We utilized an RNAi-based approach to study the function of OsCKX2 in maintaining grain yield under salinity stress condition
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	To determine if there exists, a correlation between OsCKX2 levels and yield under salinity stress condition, we assessed the growth, physiology and grain yield of OsCKX2-knockdown plants vis-à-vis the wild-type
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salinity	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salinity	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	We utilized an RNAi-based approach to study the function of OsCKX2 in maintaining grain yield under salinity stress condition
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salinity	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	To determine if there exists, a correlation between OsCKX2 levels and yield under salinity stress condition, we assessed the growth, physiology and grain yield of OsCKX2-knockdown plants vis-à-vis the wild-type
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salinity	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	Importantly, we found a negative-correlation between OsCKX2 expression and plant productivity as evident by assessment of agronomical parameters such as panicle branching, filled grains per plant, and harvest index both under control and salinity stress conditions
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain yield	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	We utilized an RNAi-based approach to study the function of OsCKX2 in maintaining grain yield under salinity stress condition
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain yield	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	To determine if there exists, a correlation between OsCKX2 levels and yield under salinity stress condition, we assessed the growth, physiology and grain yield of OsCKX2-knockdown plants vis-à-vis the wild-type
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	yield	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	yield	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	We utilized an RNAi-based approach to study the function of OsCKX2 in maintaining grain yield under salinity stress condition
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	yield	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	To determine if there exists, a correlation between OsCKX2 levels and yield under salinity stress condition, we assessed the growth, physiology and grain yield of OsCKX2-knockdown plants vis-à-vis the wild-type
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cytokinin	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	stress	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	stress	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	We utilized an RNAi-based approach to study the function of OsCKX2 in maintaining grain yield under salinity stress condition
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	stress	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	To determine if there exists, a correlation between OsCKX2 levels and yield under salinity stress condition, we assessed the growth, physiology and grain yield of OsCKX2-knockdown plants vis-à-vis the wild-type
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	stress	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	Importantly, we found a negative-correlation between OsCKX2 expression and plant productivity as evident by assessment of agronomical parameters such as panicle branching, filled grains per plant, and harvest index both under control and salinity stress conditions
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	inflorescence	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salinity stress	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salinity stress	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	We utilized an RNAi-based approach to study the function of OsCKX2 in maintaining grain yield under salinity stress condition
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salinity stress	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	To determine if there exists, a correlation between OsCKX2 levels and yield under salinity stress condition, we assessed the growth, physiology and grain yield of OsCKX2-knockdown plants vis-à-vis the wild-type
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	salinity stress	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	Importantly, we found a negative-correlation between OsCKX2 expression and plant productivity as evident by assessment of agronomical parameters such as panicle branching, filled grains per plant, and harvest index both under control and salinity stress conditions
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	panicle	Updating the elite rice variety Kongyu 131 by improving the Gn1a locus.	Quantitative trait locus (QTL) analysis of the BC3F2 population showed that the introgressed segment carrying the Gn1a allele of GKBR significantly increased the branch number and grain number per panicle
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	panicle	Updating the elite rice variety Kongyu 131 by improving the Gn1a locus.	To achieve the high yield potential of Kongyu 131, a minute chromosome fragment carrying the favorable Gn1a allele from the donor parent was introgressed into the genome of Kongyu 131, which resulted in a larger panicle and subsequent yield increase in the new Kongyu 131
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Updating the elite rice variety Kongyu 131 by improving the Gn1a locus.	Quantitative trait locus (QTL) analysis of the BC3F2 population showed that the introgressed segment carrying the Gn1a allele of GKBR significantly increased the branch number and grain number per panicle
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain number	Updating the elite rice variety Kongyu 131 by improving the Gn1a locus.	Quantitative trait locus (QTL) analysis of the BC3F2 population showed that the introgressed segment carrying the Gn1a allele of GKBR significantly increased the branch number and grain number per panicle
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	yield	Updating the elite rice variety Kongyu 131 by improving the Gn1a locus.	To achieve the high yield potential of Kongyu 131, a minute chromosome fragment carrying the favorable Gn1a allele from the donor parent was introgressed into the genome of Kongyu 131, which resulted in a larger panicle and subsequent yield increase in the new Kongyu 131
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	panicle	Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.	Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	panicle	Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.	Shuhui498 (R498) is an elite parent of heavy panicle hybrid rice by pyramiding the rare gn1a and null gs3 alleles
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.	The null gn1a allele is the determinant factor for heavy panicles through increased grain number, while gs3 is associated with grain size and weight
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain number	Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.	The null gn1a allele is the determinant factor for heavy panicles through increased grain number, while gs3 is associated with grain size and weight
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain size	Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.	The null gn1a allele is the determinant factor for heavy panicles through increased grain number, while gs3 is associated with grain size and weight
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	growth	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	In this study, OsCKX2 was specifically overexpressed in roots using RCc3 promoter to investigate the effects of root-source cytokinins on the growth of rice
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	growth	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	OsCKX2 overexpressed (OE) rice showed retarded growth with lower cytokinin levels and biomass production
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	growth	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	To conclude, reduced cytokinin levels via root-specific overexpression of OsCKX2 resulted in developmental defects, which confirmed the importance of root-source cytokinins in plant growth and morphogenesis
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	grain	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	OsCKX2 irreversibly degrades nucleobase cytokinins by encoding cytokinin oxidase/dehydrogenase to control grain production in rice
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cell division	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	Shoot-specific transcriptome analysis between OsCKX2 OE rice and wild type (WT) revealed differentially expressed genes (DEGs) associated with cell division, cell wall structure, phytohormone signaling, and assimilation and catabolism
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cytokinin	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	OsCKX2 irreversibly degrades nucleobase cytokinins by encoding cytokinin oxidase/dehydrogenase to control grain production in rice
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cytokinin	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	OsCKX2 overexpressed (OE) rice showed retarded growth with lower cytokinin levels and biomass production
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cytokinin	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	To conclude, reduced cytokinin levels via root-specific overexpression of OsCKX2 resulted in developmental defects, which confirmed the importance of root-source cytokinins in plant growth and morphogenesis
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	plant growth	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	To conclude, reduced cytokinin levels via root-specific overexpression of OsCKX2 resulted in developmental defects, which confirmed the importance of root-source cytokinins in plant growth and morphogenesis
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	cell wall	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	Shoot-specific transcriptome analysis between OsCKX2 OE rice and wild type (WT) revealed differentially expressed genes (DEGs) associated with cell division, cell wall structure, phytohormone signaling, and assimilation and catabolism
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	biomass	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	OsCKX2 overexpressed (OE) rice showed retarded growth with lower cytokinin levels and biomass production
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	phytohormone	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	Shoot-specific transcriptome analysis between OsCKX2 OE rice and wild type (WT) revealed differentially expressed genes (DEGs) associated with cell division, cell wall structure, phytohormone signaling, and assimilation and catabolism
Gn1a|OsCKX2	Os01g0197700	LOC_Os01g10110	biomass production	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed OsCKX2 in Rice	OsCKX2 overexpressed (OE) rice showed retarded growth with lower cytokinin levels and biomass production
GN2	None	None	grain	Emergence of a Novel Chimeric Gene Underlying Grain Number in Rice.	Transgenic plants over-expressing GN2 showed less grain number, reduced plant height, and later heading date than control plants
GN2	None	None	grain number	Emergence of a Novel Chimeric Gene Underlying Grain Number in Rice.	Transgenic plants over-expressing GN2 showed less grain number, reduced plant height, and later heading date than control plants
GN2	None	None	heading date	Emergence of a Novel Chimeric Gene Underlying Grain Number in Rice.	Transgenic plants over-expressing GN2 showed less grain number, reduced plant height, and later heading date than control plants
GN2	None	None	plant height	Emergence of a Novel Chimeric Gene Underlying Grain Number in Rice.	Transgenic plants over-expressing GN2 showed less grain number, reduced plant height, and later heading date than control plants
GNP12	Os12g0553200	LOC_Os12g36720	development	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of GNP12.	 The results of this study will provide insight into the characteristics and evolution of NB-ARC family and suggest that GNP12 positively regulates panicle development
GNP12	Os12g0553200	LOC_Os12g36720	grain	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of GNP12.	 The GNP12 gene encodes RGH1A protein, which regulates rice yield according to panicle length, grain number of panicle, and grain length, with eight major haplotypes
GNP12	Os12g0553200	LOC_Os12g36720	grain length	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of GNP12.	 The GNP12 gene encodes RGH1A protein, which regulates rice yield according to panicle length, grain number of panicle, and grain length, with eight major haplotypes
GNP12	Os12g0553200	LOC_Os12g36720	panicle	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of GNP12.	 The GNP12 gene encodes RGH1A protein, which regulates rice yield according to panicle length, grain number of panicle, and grain length, with eight major haplotypes
GNP12	Os12g0553200	LOC_Os12g36720	panicle	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of GNP12.	 The results of this study will provide insight into the characteristics and evolution of NB-ARC family and suggest that GNP12 positively regulates panicle development
GNP12	Os12g0553200	LOC_Os12g36720	grain number	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of GNP12.	 The GNP12 gene encodes RGH1A protein, which regulates rice yield according to panicle length, grain number of panicle, and grain length, with eight major haplotypes
GNP12	Os12g0553200	LOC_Os12g36720	yield	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of GNP12.	 The GNP12 gene encodes RGH1A protein, which regulates rice yield according to panicle length, grain number of panicle, and grain length, with eight major haplotypes
GNP12	Os12g0553200	LOC_Os12g36720	panicle length	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of GNP12.	 The GNP12 gene encodes RGH1A protein, which regulates rice yield according to panicle length, grain number of panicle, and grain length, with eight major haplotypes
GNP12	Os12g0553200	LOC_Os12g36720	panicle development	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of GNP12.	 The results of this study will provide insight into the characteristics and evolution of NB-ARC family and suggest that GNP12 positively regulates panicle development
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	reproductive	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)	In addition, the Gnp4 and Lax1-1 double mutant showed dramatically reduced secondary branches and spikelets in panicle at reproductive stage, and tillers at vegetative stage
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	grain number	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	vegetative	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)	In addition, the Gnp4 and Lax1-1 double mutant showed dramatically reduced secondary branches and spikelets in panicle at reproductive stage, and tillers at vegetative stage
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	branching	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	LAX2 regulates the branching of the aboveground parts of a rice plant throughout plant development, except for the primary branch in the panicle
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	branching	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	The lax2 mutant is similar to lax panicle1 (lax1) in that it lacks an AM in most of the lateral branching of the panicle and has a reduced number of AMs at the vegetative stage
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	branching	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	The lax1 lax2 double mutant synergistically enhances the reduced-branching phenotype, indicating the presence of multiple pathways for branching
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	vegetative	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	The lax2 mutant is similar to lax panicle1 (lax1) in that it lacks an AM in most of the lateral branching of the panicle and has a reduced number of AMs at the vegetative stage
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	grain	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	tiller	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)	In addition, the Gnp4 and Lax1-1 double mutant showed dramatically reduced secondary branches and spikelets in panicle at reproductive stage, and tillers at vegetative stage
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	spikelet	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)	In this study, we identified a natural mutant, gnp4, lack of lateral spikelet on the secondary branches in the field condition
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	spikelet	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)	In addition, the Gnp4 and Lax1-1 double mutant showed dramatically reduced secondary branches and spikelets in panicle at reproductive stage, and tillers at vegetative stage
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	panicle	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)	In addition, the Gnp4 and Lax1-1 double mutant showed dramatically reduced secondary branches and spikelets in panicle at reproductive stage, and tillers at vegetative stage
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	panicle	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)	Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	panicle	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	Here, we characterized the rice (Oryza sativa) lax panicle2 (lax2) mutant, which has altered AM formation
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	panicle	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	LAX2 regulates the branching of the aboveground parts of a rice plant throughout plant development, except for the primary branch in the panicle
Gnp4|LAX2	Os04g0396500	LOC_Os04g32510	panicle	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	The lax2 mutant is similar to lax panicle1 (lax1) in that it lacks an AM in most of the lateral branching of the panicle and has a reduced number of AMs at the vegetative stage
Gns1	Os02g0771700	LOC_Os02g53200	disease resistance	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	To assess the function of the Gns1 gene in disease resistance, we characterized transgenic rice plants constitutively expressing the Gns1 gene
Gns1	Os02g0771700	LOC_Os02g53200	fertility	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	Although transgenic plants showed stunted growth and impaired root formation, fertility, germination, and coleoptile elongation appeared unaffected compared to non-transgenic control plants, indicating that Gns1 does not play a crucial role in rice germination and coleoptile elongation
Gns1	Os02g0771700	LOC_Os02g53200	disease	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	RNA and protein gel blot analyses demonstrated that blast disease or dark treatment induced the expression of the Gns1 gene
Gns1	Os02g0771700	LOC_Os02g53200	disease	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	To assess the function of the Gns1 gene in disease resistance, we characterized transgenic rice plants constitutively expressing the Gns1 gene
Gns1	Os02g0771700	LOC_Os02g53200	blast disease	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	RNA and protein gel blot analyses demonstrated that blast disease or dark treatment induced the expression of the Gns1 gene
Gns1	Os02g0771700	LOC_Os02g53200	growth	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	Although transgenic plants showed stunted growth and impaired root formation, fertility, germination, and coleoptile elongation appeared unaffected compared to non-transgenic control plants, indicating that Gns1 does not play a crucial role in rice germination and coleoptile elongation
Gns1	Os02g0771700	LOC_Os02g53200	root	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	Although transgenic plants showed stunted growth and impaired root formation, fertility, germination, and coleoptile elongation appeared unaffected compared to non-transgenic control plants, indicating that Gns1 does not play a crucial role in rice germination and coleoptile elongation
Gns1	Os02g0771700	LOC_Os02g53200	blast	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	RNA and protein gel blot analyses demonstrated that blast disease or dark treatment induced the expression of the Gns1 gene
Gns6	Os01g0940800	LOC_Os01g71350	seedlings	A novel 1,3-glucanase Gns6 from rice possesses antifungal activity against Magnaporthe oryzae	In this study, the expression of rice 1,3-glucanases Gns2-Gns6 belonging to subfamily A in rice plant infection with Magnaporthe oryzae was investigated, and the enhanced expression of Gns6 during infection confirmed its crucial role in the defense of rice seedlings
Gns6	Os01g0940800	LOC_Os01g71350	defense	A novel 1,3-glucanase Gns6 from rice possesses antifungal activity against Magnaporthe oryzae	In this study, the expression of rice 1,3-glucanases Gns2-Gns6 belonging to subfamily A in rice plant infection with Magnaporthe oryzae was investigated, and the enhanced expression of Gns6 during infection confirmed its crucial role in the defense of rice seedlings
Gns6	Os01g0940800	LOC_Os01g71350	magnaporthe oryzae	A novel 1,3-glucanase Gns6 from rice possesses antifungal activity against Magnaporthe oryzae	A novel 1,3-glucanase Gns6 from rice possesses antifungal activity against Magnaporthe oryzae
Gns6	Os01g0940800	LOC_Os01g71350	magnaporthe oryzae	A novel 1,3-glucanase Gns6 from rice possesses antifungal activity against Magnaporthe oryzae	In this study, the expression of rice 1,3-glucanases Gns2-Gns6 belonging to subfamily A in rice plant infection with Magnaporthe oryzae was investigated, and the enhanced expression of Gns6 during infection confirmed its crucial role in the defense of rice seedlings
GnT1	Os02g0832800	LOC_Os02g58590	seed	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	Phenotypic analyses revealed that gnt1 shows defective post-seedling development and incomplete cell wall biosynthesis, leading to symptoms such as failure in tiller formation, brittle leaves, reduced cell wall thickness, and decreased cellulose content
GnT1	Os02g0832800	LOC_Os02g58590	seed	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	However, callus induced from gnt1 seeds could be maintained for periods, although it exhibited a low proliferation rate, small size, and hypersensitivity to salt stress
GnT1	Os02g0832800	LOC_Os02g58590	reproductive	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	The developmental defects of gnt1 ultimately resulted in early lethality without transition to the reproductive stage
GnT1	Os02g0832800	LOC_Os02g58590	salt	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	However, callus induced from gnt1 seeds could be maintained for periods, although it exhibited a low proliferation rate, small size, and hypersensitivity to salt stress
GnT1	Os02g0832800	LOC_Os02g58590	cell wall	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	Phenotypic analyses revealed that gnt1 shows defective post-seedling development and incomplete cell wall biosynthesis, leading to symptoms such as failure in tiller formation, brittle leaves, reduced cell wall thickness, and decreased cellulose content
GnT1	Os02g0832800	LOC_Os02g58590	cytokinin	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	sativa response regulators that are rapidly induced by cytokinins in gnt1 confirmed that cytokinin signaling is impaired in the mutant
GnT1	Os02g0832800	LOC_Os02g58590	cellulose	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	Phenotypic analyses revealed that gnt1 shows defective post-seedling development and incomplete cell wall biosynthesis, leading to symptoms such as failure in tiller formation, brittle leaves, reduced cell wall thickness, and decreased cellulose content
GnT1	Os02g0832800	LOC_Os02g58590	seedling	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	Phenotypic analyses revealed that gnt1 shows defective post-seedling development and incomplete cell wall biosynthesis, leading to symptoms such as failure in tiller formation, brittle leaves, reduced cell wall thickness, and decreased cellulose content
GnT1	Os02g0832800	LOC_Os02g58590	tiller	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	Phenotypic analyses revealed that gnt1 shows defective post-seedling development and incomplete cell wall biosynthesis, leading to symptoms such as failure in tiller formation, brittle leaves, reduced cell wall thickness, and decreased cellulose content
GnT1	Os02g0832800	LOC_Os02g58590	salt stress	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa	However, callus induced from gnt1 seeds could be maintained for periods, although it exhibited a low proliferation rate, small size, and hypersensitivity to salt stress
GORI|OsABT	Os03g0738700	LOC_Os03g52870	growth	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.
GORI|OsABT	Os03g0738700	LOC_Os03g52870	pollen	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.
GORI|OsABT	Os03g0738700	LOC_Os03g52870	pollen	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	 GORI encodes a seven-WD40-motif protein that interacts with an AP180 N-terminal homology (ANTH)-domain protein, which modulates clathrin-mediated endocytosis (CME), and regulates Rac6 activity in the apical plasma membrane of elongating pollen tubes
GORI|OsABT	Os03g0738700	LOC_Os03g52870	pollen	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	 Loss of function of GORI or Rac6 reduces pollen germination and tube growth, thereby resulting in male sterility in rice
GORI|OsABT	Os03g0738700	LOC_Os03g52870	pollen	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	 In contrast, overexpression of Rac6 increases pollen tube elongation, with this effect being rescued by GORI overexpression
GORI|OsABT	Os03g0738700	LOC_Os03g52870	pollen	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	 Our findings demonstrated that the GORI protein is a positive regulator of pollen germination and tube growth, serving as a link between Rac6 activity regulation and ANTH-mediated endocytosis
GORI|OsABT	Os03g0738700	LOC_Os03g52870	sterility	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	 Loss of function of GORI or Rac6 reduces pollen germination and tube growth, thereby resulting in male sterility in rice
GORI|OsABT	Os03g0738700	LOC_Os03g52870	plasma membrane	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	 GORI encodes a seven-WD40-motif protein that interacts with an AP180 N-terminal homology (ANTH)-domain protein, which modulates clathrin-mediated endocytosis (CME), and regulates Rac6 activity in the apical plasma membrane of elongating pollen tubes
GORI|OsABT	Os03g0738700	LOC_Os03g52870	male sterility	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	 Loss of function of GORI or Rac6 reduces pollen germination and tube growth, thereby resulting in male sterility in rice
GORI|OsABT	Os03g0738700	LOC_Os03g52870	root	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Root ion concentrations indicated that OsABT overexpression lines could maintain lower Na(+) and higher K(+)/Na(+) ratios and upregulated expression of salt-related genes OsSOS1 and OsHAK5 compared with the wild-type (WT) Nipponbare plants
GORI|OsABT	Os03g0738700	LOC_Os03g52870	stress	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 A transcriptome analysis revealed that the differentially expressed genes between OsABT overexpression lines and WT plants were enriched in plant hormone signal transduction, including ABA signaling pathway under salt stress
GORI|OsABT	Os03g0738700	LOC_Os03g52870	seedling	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.
GORI|OsABT	Os03g0738700	LOC_Os03g52870	seedling	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Thus, OsABT can improve the salt tolerance in rice seedling roots by inhibiting reactive oxygen species accumulation, thereby regulating the intracellular Na(+)/K(+) balance, ABA content, and ABA signaling pathway
GORI|OsABT	Os03g0738700	LOC_Os03g52870	salt	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.
GORI|OsABT	Os03g0738700	LOC_Os03g52870	salt	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 A transcriptome analysis revealed that the differentially expressed genes between OsABT overexpression lines and WT plants were enriched in plant hormone signal transduction, including ABA signaling pathway under salt stress
GORI|OsABT	Os03g0738700	LOC_Os03g52870	salt	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Thus, OsABT can improve the salt tolerance in rice seedling roots by inhibiting reactive oxygen species accumulation, thereby regulating the intracellular Na(+)/K(+) balance, ABA content, and ABA signaling pathway
GORI|OsABT	Os03g0738700	LOC_Os03g52870	tolerance	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.
GORI|OsABT	Os03g0738700	LOC_Os03g52870	tolerance	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Thus, OsABT can improve the salt tolerance in rice seedling roots by inhibiting reactive oxygen species accumulation, thereby regulating the intracellular Na(+)/K(+) balance, ABA content, and ABA signaling pathway
GORI|OsABT	Os03g0738700	LOC_Os03g52870	ABA	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Furthermore, Overexpression of OsABT decreased the abscisic acid (ABA) content, while downregulating the ABA synthesis genes OsNCED3 and OsNCED4 and upregulating the ABA catabolic gene OsABA8ox2
GORI|OsABT	Os03g0738700	LOC_Os03g52870	ABA	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 The yeast two-hybrid and bimolecular fluorescence complementation analyses showed that OsABT interacted with the ABA receptor proteins OsPYL4, OsPYL10, and PP2C phosphatase OsABIL2
GORI|OsABT	Os03g0738700	LOC_Os03g52870	ABA	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 A transcriptome analysis revealed that the differentially expressed genes between OsABT overexpression lines and WT plants were enriched in plant hormone signal transduction, including ABA signaling pathway under salt stress
GORI|OsABT	Os03g0738700	LOC_Os03g52870	ABA	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Thus, OsABT can improve the salt tolerance in rice seedling roots by inhibiting reactive oxygen species accumulation, thereby regulating the intracellular Na(+)/K(+) balance, ABA content, and ABA signaling pathway
GORI|OsABT	Os03g0738700	LOC_Os03g52870	salt tolerance	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.
GORI|OsABT	Os03g0738700	LOC_Os03g52870	salt tolerance	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Thus, OsABT can improve the salt tolerance in rice seedling roots by inhibiting reactive oxygen species accumulation, thereby regulating the intracellular Na(+)/K(+) balance, ABA content, and ABA signaling pathway
GORI|OsABT	Os03g0738700	LOC_Os03g52870	salt stress	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 A transcriptome analysis revealed that the differentially expressed genes between OsABT overexpression lines and WT plants were enriched in plant hormone signal transduction, including ABA signaling pathway under salt stress
GORI|OsABT	Os03g0738700	LOC_Os03g52870	R protein	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 The yeast two-hybrid and bimolecular fluorescence complementation analyses showed that OsABT interacted with the ABA receptor proteins OsPYL4, OsPYL10, and PP2C phosphatase OsABIL2
GORI|OsABT	Os03g0738700	LOC_Os03g52870	abscisic acid	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.
GORI|OsABT	Os03g0738700	LOC_Os03g52870	abscisic acid	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Furthermore, Overexpression of OsABT decreased the abscisic acid (ABA) content, while downregulating the ABA synthesis genes OsNCED3 and OsNCED4 and upregulating the ABA catabolic gene OsABA8ox2
GORI|OsABT	Os03g0738700	LOC_Os03g52870	signal transduction	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 A transcriptome analysis revealed that the differentially expressed genes between OsABT overexpression lines and WT plants were enriched in plant hormone signal transduction, including ABA signaling pathway under salt stress
GORI|OsABT	Os03g0738700	LOC_Os03g52870	 ABA 	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Furthermore, Overexpression of OsABT decreased the abscisic acid (ABA) content, while downregulating the ABA synthesis genes OsNCED3 and OsNCED4 and upregulating the ABA catabolic gene OsABA8ox2
GORI|OsABT	Os03g0738700	LOC_Os03g52870	 ABA 	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 The yeast two-hybrid and bimolecular fluorescence complementation analyses showed that OsABT interacted with the ABA receptor proteins OsPYL4, OsPYL10, and PP2C phosphatase OsABIL2
GORI|OsABT	Os03g0738700	LOC_Os03g52870	 ABA 	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 A transcriptome analysis revealed that the differentially expressed genes between OsABT overexpression lines and WT plants were enriched in plant hormone signal transduction, including ABA signaling pathway under salt stress
GORI|OsABT	Os03g0738700	LOC_Os03g52870	 ABA 	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Thus, OsABT can improve the salt tolerance in rice seedling roots by inhibiting reactive oxygen species accumulation, thereby regulating the intracellular Na(+)/K(+) balance, ABA content, and ABA signaling pathway
GORI|OsABT	Os03g0738700	LOC_Os03g52870	reactive oxygen species	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Thus, OsABT can improve the salt tolerance in rice seedling roots by inhibiting reactive oxygen species accumulation, thereby regulating the intracellular Na(+)/K(+) balance, ABA content, and ABA signaling pathway
GORI|OsABT	Os03g0738700	LOC_Os03g52870	phosphatase	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 The yeast two-hybrid and bimolecular fluorescence complementation analyses showed that OsABT interacted with the ABA receptor proteins OsPYL4, OsPYL10, and PP2C phosphatase OsABIL2
gp1	Os07g0142200	LOC_Os07g04930	abiotic stress	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	Real-time PCR analysis revealed that some abiotic stress-related genes, such as OsLEA3, OsTPP1, Rab25, gp1 precursor, β-gal, LOC_Os05g11910 and LOC_Os05g39250, were down-regulated in OsbZIP52 overexpression lines
GPA3	Os03g0835800	LOC_Os03g61950	seed	GLUTELIN PRECURSOR ACCUMULATION3 encodes a regulator of post-Golgi vesicular traffic essential for vacuolar protein sorting in rice endosperm	Here, we report the functional characterization of the rice (Oryza sativa) glutelin precursor accumulation3 (gpa3) mutant, which exhibits a floury endosperm phenotype and accumulates excess proglutelins in dry seeds
GPA3	Os03g0835800	LOC_Os03g61950	endosperm	GLUTELIN PRECURSOR ACCUMULATION3 encodes a regulator of post-Golgi vesicular traffic essential for vacuolar protein sorting in rice endosperm	Here, we report the functional characterization of the rice (Oryza sativa) glutelin precursor accumulation3 (gpa3) mutant, which exhibits a floury endosperm phenotype and accumulates excess proglutelins in dry seeds
GPA3	Os03g0835800	LOC_Os03g61950	endosperm	GLUTELIN PRECURSOR ACCUMULATION3 encodes a regulator of post-Golgi vesicular traffic essential for vacuolar protein sorting in rice endosperm	Positional cloning of GPA3 revealed that it encodes a plant-specific kelch-repeat protein that is localized to the trans-Golgi networks, DVs, and PSVs in the developing endosperm
GPA5	Os06g0643000	LOC_Os06g43560	seed	GPA5 Encodes a Rab5a Effector Required for Post-Golgi Trafficking of Rice Storage Proteins.	Furthermore, we demonstrated that GPA5 physically interacts with a class C core vacuole/endosome tethering (CORVET) complex and a seed plant-specific VAMP727-containing R-soluble NSF attachment protein receptor (SNARE) complex
GPA5	Os06g0643000	LOC_Os06g43560	endosperm	GPA5 Encodes a Rab5a Effector Required for Post-Golgi Trafficking of Rice Storage Proteins.	We show that GPA5 is a membrane-associated protein capable of forming homodimers and that it is specifically localized to DVs in developing endosperm
GPA5	Os06g0643000	LOC_Os06g43560	endosperm	GPA5 Encodes a Rab5a Effector Required for Post-Golgi Trafficking of Rice Storage Proteins.	Collectively, our results suggest that GPA5 functions as a plant-specific effector of Rab5a required for mediating tethering and membrane fusion of DVs with PSVs in rice endosperm
GRA78	Os01g0814800	LOC_Os01g59920	chloroplast	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.
GRA78	Os01g0814800	LOC_Os01g59920	chloroplast	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.	GRA78 is constitutively expressed in all tissues and its encoded protein is targeted to the chloroplast
GRA78	Os01g0814800	LOC_Os01g59920	seedling	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.
GRA78	Os01g0814800	LOC_Os01g59920	development	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.
GRA78	Os01g0814800	LOC_Os01g59920	map-based cloning	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.	Map-based cloning revealed that candidate gene LOC_Os01g59920 of GRA78 encodes a putative S-sulfocysteine synthase showing significant similarity with Arabidopsis CS26
GRA78	Os01g0814800	LOC_Os01g59920	chloroplast development	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.
GRP162	Os03g0641300	LOC_Os03g43990	fertility	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162	Furthermore, we found that RF5 and GRP162 are both components of a restoration of fertility complex (RFC) that is 400 to 500 kD in size and can cleave CMS-associated transcripts in vitro
GRP162	Os03g0641300	LOC_Os03g43990	fertility	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162
GRP162	Os03g0641300	LOC_Os03g43990	sterile	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162
GRY79	Os02g0539600	LOC_Os02g33610	seedling	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.
GRY79	Os02g0539600	LOC_Os02g33610	seedling	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	The green - revertible yellow79 mutant resulting from a single-base mutation suggested that the GRY79 gene encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice
GRY79	Os02g0539600	LOC_Os02g33610	seedling	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	Therefore, we have confirmed that the gry79 mutant phenotype resulted from a single-base mutation in GRY79 (Os02g33610) gene, suggesting that the gene encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice
GRY79	Os02g0539600	LOC_Os02g33610	chloroplast	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.
GRY79	Os02g0539600	LOC_Os02g33610	chloroplast	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	The green - revertible yellow79 mutant resulting from a single-base mutation suggested that the GRY79 gene encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice
GRY79	Os02g0539600	LOC_Os02g33610	chloroplast	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	Therefore, we have confirmed that the gry79 mutant phenotype resulted from a single-base mutation in GRY79 (Os02g33610) gene, suggesting that the gene encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice
GRY79	Os02g0539600	LOC_Os02g33610	development	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.
GRY79	Os02g0539600	LOC_Os02g33610	development	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	The green - revertible yellow79 mutant resulting from a single-base mutation suggested that the GRY79 gene encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice
GRY79	Os02g0539600	LOC_Os02g33610	development	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	Therefore, we have confirmed that the gry79 mutant phenotype resulted from a single-base mutation in GRY79 (Os02g33610) gene, suggesting that the gene encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice
GRY79	Os02g0539600	LOC_Os02g33610	chloroplast development	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.
GRY79	Os02g0539600	LOC_Os02g33610	chloroplast development	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	The green - revertible yellow79 mutant resulting from a single-base mutation suggested that the GRY79 gene encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice
GRY79	Os02g0539600	LOC_Os02g33610	chloroplast development	GRY79 encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	Therefore, we have confirmed that the gry79 mutant phenotype resulted from a single-base mutation in GRY79 (Os02g33610) gene, suggesting that the gene encoding a putative metallo-β-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain size	A rare allele of GS2 enhances grain size and grain yield in rice	A rare allele of GS2 enhances grain size and grain yield in rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain yield	A rare allele of GS2 enhances grain size and grain yield in rice	A rare allele of GS2 enhances grain size and grain yield in rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	transcriptional regulator	A rare allele of GS2 enhances grain size and grain yield in rice	Here, we report the cloning and characterization of a dominant QTL, GRAIN SIZE ON CHROMOSOME 2 (GS2), which encodes Growth-Regulating Factor 4 (OsGRF4), a transcriptional regulator.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	transcription activator	A rare allele of GS2 enhances grain size and grain yield in rice	GS2 localizes to the nucleus and may act as a transcription activator.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain weight	A rare allele of GS2 enhances grain size and grain yield in rice	The increase of GS2 expression leads to larger cells and increased numbers of cells, which thus enhances grain weight and yield.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain	Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice	We demonstrate that a 2 bp substitution mutation in GS2 perturbs OsmiR396-directed regulation of GS2, resulting in large and heavy grains and increased grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain	Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice	Further results reveal that GS2 interacts with the transcription coactivitors OsGIF1/2/3, and overexpression of OsGIF1 increases grain size and weight
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain yield	Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice	We demonstrate that a 2 bp substitution mutation in GS2 perturbs OsmiR396-directed regulation of GS2, resulting in large and heavy grains and increased grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	yield	Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice	We demonstrate that a 2 bp substitution mutation in GS2 perturbs OsmiR396-directed regulation of GS2, resulting in large and heavy grains and increased grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain size	Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice	Further results reveal that GS2 interacts with the transcription coactivitors OsGIF1/2/3, and overexpression of OsGIF1 increases grain size and weight
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain	Control of grain size and rice yield by GL2-mediated brassinosteroid responses	Because of the mutation, GL2 has a moderately increased expression level, which consequently activates brassinosteroid responses by upregulating a large number of brassinosteroid-induced genes to promote grain development
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	development	Control of grain size and rice yield by GL2-mediated brassinosteroid responses	Because of the mutation, GL2 has a moderately increased expression level, which consequently activates brassinosteroid responses by upregulating a large number of brassinosteroid-induced genes to promote grain development
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	brassinosteroid	Control of grain size and rice yield by GL2-mediated brassinosteroid responses	Because of the mutation, GL2 has a moderately increased expression level, which consequently activates brassinosteroid responses by upregulating a large number of brassinosteroid-induced genes to promote grain development
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	Brassinosteroid	Control of grain size and rice yield by GL2-mediated brassinosteroid responses	Because of the mutation, GL2 has a moderately increased expression level, which consequently activates brassinosteroid responses by upregulating a large number of brassinosteroid-induced genes to promote grain development
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	panicle	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	OsGRF4 controls grain shape, panicle length and seed shattering in rice.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	panicle	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	Higher expression of OsGRF4 is correlated with larger grain, longer panicle and lower seed shattering
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	panicle	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	Further research showed that OsGRF4 regulated two cytokinin dehydrogenase precursor genes (CKX5 and CKX1) resulting in increased cytokinin levels, which might affect the panicle traits
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	OsGRF4 controls grain shape, panicle length and seed shattering in rice.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	seed	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	OsGRF4 controls grain shape, panicle length and seed shattering in rice.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	seed	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	Higher expression of OsGRF4 is correlated with larger grain, longer panicle and lower seed shattering
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	seed	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	High storage capacity and moderate seed shattering of OsGRF4 may be useful in high-yield breeding and mechanized harvesting of rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	cytokinin	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	Further research showed that OsGRF4 regulated two cytokinin dehydrogenase precursor genes (CKX5 and CKX1) resulting in increased cytokinin levels, which might affect the panicle traits
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	breeding	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	High storage capacity and moderate seed shattering of OsGRF4 may be useful in high-yield breeding and mechanized harvesting of rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	shattering	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	OsGRF4 controls grain shape, panicle length and seed shattering in rice.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	shattering	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	Higher expression of OsGRF4 is correlated with larger grain, longer panicle and lower seed shattering
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	shattering	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	High storage capacity and moderate seed shattering of OsGRF4 may be useful in high-yield breeding and mechanized harvesting of rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	seed shattering	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	OsGRF4 controls grain shape, panicle length and seed shattering in rice.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	seed shattering	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	Higher expression of OsGRF4 is correlated with larger grain, longer panicle and lower seed shattering
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	seed shattering	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	High storage capacity and moderate seed shattering of OsGRF4 may be useful in high-yield breeding and mechanized harvesting of rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain	The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in Rice.	The mutation in OsGRF4 perturbs the OsmiR396 target regulation of OsGRF4, generating a larger grain size and enhanced grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain yield	The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in Rice.	The mutation in OsGRF4 perturbs the OsmiR396 target regulation of OsGRF4, generating a larger grain size and enhanced grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	yield	The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in Rice.	The mutation in OsGRF4 perturbs the OsmiR396 target regulation of OsGRF4, generating a larger grain size and enhanced grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain size	The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in Rice.	The mutation in OsGRF4 perturbs the OsmiR396 target regulation of OsGRF4, generating a larger grain size and enhanced grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	transcription factor	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 LGS1 encodes the OsGRF4 transcription factor and contains a 2-basepair missense mutation in the coding region that coincides with the putative pairing site of microRNA396
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	seedlings	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 In addition to producing larger grains, LGS1 also enhanced cold tolerance at the seedling stage and increased the survival rate of seedlings after cold stress treatment
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 Here, a semi-dominant QTL, designated Large Grain Size 1 (LGS1), was cloned and the potential molecular mechanism of LGS1 function was studied
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	seedling	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 In addition to producing larger grains, LGS1 also enhanced cold tolerance at the seedling stage and increased the survival rate of seedlings after cold stress treatment
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	development	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 These findings indicate that the mutation in LGS1 appears to disturb the GRF4-miR396-stress response network and results in the development of enlarged grains and enhancement of cold tolerance in rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	tolerance	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	tolerance	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 In addition to producing larger grains, LGS1 also enhanced cold tolerance at the seedling stage and increased the survival rate of seedlings after cold stress treatment
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	tolerance	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 These findings indicate that the mutation in LGS1 appears to disturb the GRF4-miR396-stress response network and results in the development of enlarged grains and enhancement of cold tolerance in rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain size	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain size	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 Here, a semi-dominant QTL, designated Large Grain Size 1 (LGS1), was cloned and the potential molecular mechanism of LGS1 function was studied
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	cold tolerance	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	cold tolerance	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 In addition to producing larger grains, LGS1 also enhanced cold tolerance at the seedling stage and increased the survival rate of seedlings after cold stress treatment
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	cold tolerance	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 These findings indicate that the mutation in LGS1 appears to disturb the GRF4-miR396-stress response network and results in the development of enlarged grains and enhancement of cold tolerance in rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	cold stress	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 In addition to producing larger grains, LGS1 also enhanced cold tolerance at the seedling stage and increased the survival rate of seedlings after cold stress treatment
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	stress	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 In addition to producing larger grains, LGS1 also enhanced cold tolerance at the seedling stage and increased the survival rate of seedlings after cold stress treatment
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	stress response	A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice.	 These findings indicate that the mutation in LGS1 appears to disturb the GRF4-miR396-stress response network and results in the development of enlarged grains and enhancement of cold tolerance in rice
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	nitrogen	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 Accumulation of OsGRF4 enhances nitrogen usage and metabolism, and increases grain size and grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	nitrogen	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 Taken together, our results suggest that variation in OsGRF4 affects proper transcriptional and splicing regulation of genes under HS, and that this can be mediated by, and also feed back to, carbohydrate and nitrogen metabolism, resulting in a reduction in the heat tolerance of rice anthers
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 The rice variety grain size on chromosome 2 (GS2) contains sequence variations of OsGRF4 (Oryza sativa growth-regulating factor 4; OsGRF4(AA) ), escaping the microRNA miR396-mediated degradation of this gene at the mRNA level
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 Accumulation of OsGRF4 enhances nitrogen usage and metabolism, and increases grain size and grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain size	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 The rice variety grain size on chromosome 2 (GS2) contains sequence variations of OsGRF4 (Oryza sativa growth-regulating factor 4; OsGRF4(AA) ), escaping the microRNA miR396-mediated degradation of this gene at the mRNA level
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain size	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 Accumulation of OsGRF4 enhances nitrogen usage and metabolism, and increases grain size and grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	grain yield	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 Accumulation of OsGRF4 enhances nitrogen usage and metabolism, and increases grain size and grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	tolerance	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 Taken together, our results suggest that variation in OsGRF4 affects proper transcriptional and splicing regulation of genes under HS, and that this can be mediated by, and also feed back to, carbohydrate and nitrogen metabolism, resulting in a reduction in the heat tolerance of rice anthers
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	yield	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 Accumulation of OsGRF4 enhances nitrogen usage and metabolism, and increases grain size and grain yield
GS2|OsGRF4|GL2|GLW2|LGS1	Os02g0701300	LOC_Os02g47280	heat tolerance	OsGRF4(AA) compromises heat tolerance of developing pollen grains in rice.	 Taken together, our results suggest that variation in OsGRF4 affects proper transcriptional and splicing regulation of genes under HS, and that this can be mediated by, and also feed back to, carbohydrate and nitrogen metabolism, resulting in a reduction in the heat tolerance of rice anthers
GS3	Os03g0407400	None	grain	Evolutionary history of GS3, a gene conferring grain length in rice	Here we clone and characterize GS3, an evolutionarily important gene controlling grain size in rice
GS3	Os03g0407400	None	grain	Evolutionary history of GS3, a gene conferring grain length in rice	We show that GS3 is highly expressed in young panicles in both short- and long-grained varieties but is not expressed in leaves or panicles after flowering, and we use genetic transformation to demonstrate that the dominant allele for short grain complements the long-grain phenotype
GS3	Os03g0407400	None	grain	Evolutionary history of GS3, a gene conferring grain length in rice	An association study revealed that a C to A mutation in the second exon of GS3 (A allele) was associated with enhanced grain length in Oryza sativa but was absent from other Oryza species
GS3	Os03g0407400	None	grain	Evolutionary history of GS3, a gene conferring grain length in rice	Evolutionary history of GS3, a gene conferring grain length in rice
GS3	Os03g0407400	None	seed	GS3 participates in stigma exsertion as well as seed length in rice	We demonstrate that GS3, one of the genes regulating seed length, also regulates stigma length and participates in stigma exsertion in rice
GS3	Os03g0407400	None	seed	GS3 participates in stigma exsertion as well as seed length in rice	Manipulation of GS3 should contribute to the improvement of hybrid seed-production efficiency
GS3	Os03g0407400	None	seed	GS3 participates in stigma exsertion as well as seed length in rice	GS3 participates in stigma exsertion as well as seed length in rice
GS3	Os03g0407400	None	grain length	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	The GS3 locus located in the pericentromeric region of rice chromosome 3 has been frequently identified as a major QTL for both grain weight (a yield trait) and grain length (a quality trait) in the literature
GS3	Os03g0407400	None	grain length	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
GS3	Os03g0407400	None	grain size	Multiple and independent origins of short seeded alleles of GS3 in rice	GRAIN SIZE 3 (GS3) is a cloned gene that is related to seed length
GS3	Os03g0407400	None	grain length	Evolutionary history of GS3, a gene conferring grain length in rice	An association study revealed that a C to A mutation in the second exon of GS3 (A allele) was associated with enhanced grain length in Oryza sativa but was absent from other Oryza species
GS3	Os03g0407400	None	grain length	Evolutionary history of GS3, a gene conferring grain length in rice	Evolutionary history of GS3, a gene conferring grain length in rice
GS3	Os03g0407400	None	grain size	Linking differential domain functions of the GS3 protein to natural variation of grain size in rice	Here we report the genetic and molecular characterization of GS3, a major quantitative trait locus for grain size
GS3	Os03g0407400	None	grain size	Linking differential domain functions of the GS3 protein to natural variation of grain size in rice	This study linked the functional domains of the GS3 protein to natural variation of grain size in rice
GS3	Os03g0407400	None	grain size	Linking differential domain functions of the GS3 protein to natural variation of grain size in rice	Linking differential domain functions of the GS3 protein to natural variation of grain size in rice
GS3	Os03g0407400	None	seed	Evolutionary history of GS3, a gene conferring grain length in rice	This study indicates a critical role for GS3 in defining the seed morphologies of modern subpopulations of O
GS3	Os03g0407400	None	grain	Multiple and independent origins of short seeded alleles of GS3 in rice	GRAIN SIZE 3 (GS3) is a cloned gene that is related to seed length
GS3	Os03g0407400	None	grain length	A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker	Comparative sequencing of GS3, the most important grain length (GL) QTL, has shown that differentiation of rice GL might be principally due to a single nucleotide polymorphism (SNP) between C and A in the second exon
GS3	Os03g0407400	None	grain length	A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker	A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker
GS3	Os03g0407400	None	grain	A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker	Comparative sequencing of GS3, the most important grain length (GL) QTL, has shown that differentiation of rice GL might be principally due to a single nucleotide polymorphism (SNP) between C and A in the second exon
GS3	Os03g0407400	None	grain	A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker	A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker
GS3	Os03g0407400	None	grain size	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	This mutation causes a 178-aa truncation in the C-terminus of the predicted protein, suggesting that GS3 may function as a negative regulator for grain size
GS3	Os03g0407400	None	grain weight	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	The GS3 locus located in the pericentromeric region of rice chromosome 3 has been frequently identified as a major QTL for both grain weight (a yield trait) and grain length (a quality trait) in the literature
GS3	Os03g0407400	None	grain weight	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	Analysis of a random subpopulation of 201 individuals from the BC3F2 progeny confirmed that the GS3 locus explained 80-90% of the variation for grain weight and length in this population
GS3	Os03g0407400	None	grain	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	Transcription of two known grain-length-related genes, GS3 and SRS3, was largely unaffected in the PGL1-overexpressing and APG-silenced plants
GS3	Os03g0407400	None	grain width	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
GS3	Os03g0407400	None	grain size	Evolutionary history of GS3, a gene conferring grain length in rice	Here we clone and characterize GS3, an evolutionarily important gene controlling grain size in rice
GS3	Os03g0407400	None	seed	Multiple and independent origins of short seeded alleles of GS3 in rice	GRAIN SIZE 3 (GS3) is a cloned gene that is related to seed length
GS3	Os03g0407400	None	seed	Multiple and independent origins of short seeded alleles of GS3 in rice	Here we report the discovery of new deletion alleles at the GS3 locus, each of which confer short seed
GS3	Os03g0407400	None	seed	Multiple and independent origins of short seeded alleles of GS3 in rice	Transformation experiments demonstrated that one of the deletion alleles of GS3 decrease the cell number in the upper epidermis of the glume, resulting in a significant reduction in seed length
GS3	Os03g0407400	None	seed	Multiple and independent origins of short seeded alleles of GS3 in rice	Multiple and independent origins of short seeded alleles of GS3 in rice
GS3	Os03g0407400	None	grain	Linking differential domain functions of the GS3 protein to natural variation of grain size in rice	Here we report the genetic and molecular characterization of GS3, a major quantitative trait locus for grain size
GS3	Os03g0407400	None	grain	Linking differential domain functions of the GS3 protein to natural variation of grain size in rice	This study linked the functional domains of the GS3 protein to natural variation of grain size in rice
GS3	Os03g0407400	None	grain	Linking differential domain functions of the GS3 protein to natural variation of grain size in rice	Linking differential domain functions of the GS3 protein to natural variation of grain size in rice
GS3	Os03g0407400	None	grain	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	The GS3 locus located in the pericentromeric region of rice chromosome 3 has been frequently identified as a major QTL for both grain weight (a yield trait) and grain length (a quality trait) in the literature
GS3	Os03g0407400	None	grain	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	Near isogenic lines of GS3 were developed by successive crossing and backcrossing Minghui 63 (large grain) with Chuan 7 (small grain), using Minghui 63 as the recurrent parent
GS3	Os03g0407400	None	grain	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	Analysis of a random subpopulation of 201 individuals from the BC3F2 progeny confirmed that the GS3 locus explained 80-90% of the variation for grain weight and length in this population
GS3	Os03g0407400	None	grain	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	Using 1,384 individuals with recessive phenotype (large grain) from a total of 5,740 BC3F2 plants and 11 molecular markers based on sequence information, GS3 was mapped to a DNA fragment approximately 7
GS3	Os03g0407400	None	grain	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	Comparative sequencing analysis identified a nonsense mutation, shared among all the large-grain varieties tested in comparison with the small grain varieties, in the second exon of the putative GS3 gene
GS3	Os03g0407400	None	grain	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	This mutation causes a 178-aa truncation in the C-terminus of the predicted protein, suggesting that GS3 may function as a negative regulator for grain size
GS3	Os03g0407400	None	grain	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
GS3	Os03g0407400	None	yield	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein	The GS3 locus located in the pericentromeric region of rice chromosome 3 has been frequently identified as a major QTL for both grain weight (a yield trait) and grain length (a quality trait) in the literature
GS3	Os03g0407400	None	panicle	Evolutionary history of GS3, a gene conferring grain length in rice	We show that GS3 is highly expressed in young panicles in both short- and long-grained varieties but is not expressed in leaves or panicles after flowering, and we use genetic transformation to demonstrate that the dominant allele for short grain complements the long-grain phenotype
GS3	Os03g0407400	None	grain	Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131.	Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131.
GS3	Os03g0407400	None	grain	Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131.	This result demonstrates that update the GS3 locus is a feasible and efficient and accurate way can be applied to improve grain size of rice
GS3	Os03g0407400	None	grain length	Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131.	Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131.
GS3	Os03g0407400	None	grain size	Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131.	This result demonstrates that update the GS3 locus is a feasible and efficient and accurate way can be applied to improve grain size of rice
GS3	Os03g0407400	None	development	Comprehensive Transcriptome Analysis of GS3 Near-Isogenic Lines During Panicle Development in Rice (Oryza sativa L.).	Comprehensive Transcriptome Analysis of GS3 Near-Isogenic Lines During Panicle Development in Rice (Oryza sativa L.).
GS3	Os03g0407400	None	panicle	Comprehensive Transcriptome Analysis of GS3 Near-Isogenic Lines During Panicle Development in Rice (Oryza sativa L.).	Comprehensive Transcriptome Analysis of GS3 Near-Isogenic Lines During Panicle Development in Rice (Oryza sativa L.).
GS3	Os03g0407400	None	panicle	Comprehensive Transcriptome Analysis of GS3 Near-Isogenic Lines During Panicle Development in Rice (Oryza sativa L.).	 The current understanding of the function of the GS3 gene, especially concerning the regulatory mechanism of panicle development, is still in its infancy
GS3	Os03g0407400	None	grain	The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.	 This study found that the nonsense mutated GS3 gene, the gs3 allele of Akita 63, has a superior yield production with enlarged grain size
GS3	Os03g0407400	None	grain	The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.	 The gs3 allele increased the yield with improvements in harvest index and NUE for yields per plant N content by analyzing the near-isogenic line of rice plants with a large grain (LG-Notohikari), which was developed by introducing the gs3 allele of Akita 63 into normal-grain japonica cultivar, Notohikari
GS3	Os03g0407400	None	grain size	The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.	 This study found that the nonsense mutated GS3 gene, the gs3 allele of Akita 63, has a superior yield production with enlarged grain size
GS3	Os03g0407400	None	yield	The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.	The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.
GS3	Os03g0407400	None	yield	The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.	 This study found that the nonsense mutated GS3 gene, the gs3 allele of Akita 63, has a superior yield production with enlarged grain size
GS3	Os03g0407400	None	yield	The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.	 The gs3 allele increased the yield with improvements in harvest index and NUE for yields per plant N content by analyzing the near-isogenic line of rice plants with a large grain (LG-Notohikari), which was developed by introducing the gs3 allele of Akita 63 into normal-grain japonica cultivar, Notohikari
GS3	Os03g0407400	None	yield	The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.	 Thus, the gs3 allele would be promising for further yield increase without additional large input of N fertilization in non-gs3-allele rice varieties
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain size	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	stress	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	flavonoid	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	lignin	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	stress tolerance	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	temperature	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Our demonstration that leaf-derived ABA activates starch synthesis genes explains the incompletely filled and floury seed phenotypes in dg1 Both the DG1-mediated long-distance ABA transport efficiency and grain-filling phenotypes are temperature sensitive
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	seed	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Our demonstration that leaf-derived ABA activates starch synthesis genes explains the incompletely filled and floury seed phenotypes in dg1 Both the DG1-mediated long-distance ABA transport efficiency and grain-filling phenotypes are temperature sensitive
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	starch	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Our demonstration that leaf-derived ABA activates starch synthesis genes explains the incompletely filled and floury seed phenotypes in dg1 Both the DG1-mediated long-distance ABA transport efficiency and grain-filling phenotypes are temperature sensitive
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	ABA	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Specifically, ABA is biosynthesized in both WT and dg1 leaves, but only WT caryopses accumulate leaf-derived ABA
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	ABA	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Our demonstration that leaf-derived ABA activates starch synthesis genes explains the incompletely filled and floury seed phenotypes in dg1 Both the DG1-mediated long-distance ABA transport efficiency and grain-filling phenotypes are temperature sensitive
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain-filling	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Our demonstration that leaf-derived ABA activates starch synthesis genes explains the incompletely filled and floury seed phenotypes in dg1 Both the DG1-mediated long-distance ABA transport efficiency and grain-filling phenotypes are temperature sensitive
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain-filling	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Moreover, we extended these mechanistic insights to other cereals by observing similar grain-filling defects in a maize DG1 ortholog mutant
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	 ABA 	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Specifically, ABA is biosynthesized in both WT and dg1 leaves, but only WT caryopses accumulate leaf-derived ABA
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	 ABA 	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Our demonstration that leaf-derived ABA activates starch synthesis genes explains the incompletely filled and floury seed phenotypes in dg1 Both the DG1-mediated long-distance ABA transport efficiency and grain-filling phenotypes are temperature sensitive
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	seed phenotype	Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism.	 Our demonstration that leaf-derived ABA activates starch synthesis genes explains the incompletely filled and floury seed phenotypes in dg1 Both the DG1-mediated long-distance ABA transport efficiency and grain-filling phenotypes are temperature sensitive
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	leaf	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Map-based cloning and molecular biological analyses revealed that GFD1 encoded a MATE transporter and expressed high in vascular tissues of the stem, spikelet hulls and rachilla, but low in the leaf, controlling carbohydrate partitioning in the stem and grain but not in the leaf
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	stem	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Map-based cloning and molecular biological analyses revealed that GFD1 encoded a MATE transporter and expressed high in vascular tissues of the stem, spikelet hulls and rachilla, but low in the leaf, controlling carbohydrate partitioning in the stem and grain but not in the leaf
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	spikelet	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Map-based cloning and molecular biological analyses revealed that GFD1 encoded a MATE transporter and expressed high in vascular tissues of the stem, spikelet hulls and rachilla, but low in the leaf, controlling carbohydrate partitioning in the stem and grain but not in the leaf
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Map-based cloning and molecular biological analyses revealed that GFD1 encoded a MATE transporter and expressed high in vascular tissues of the stem, spikelet hulls and rachilla, but low in the leaf, controlling carbohydrate partitioning in the stem and grain but not in the leaf
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain size	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain size	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	panicle	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain number	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	map-based cloning	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Map-based cloning and molecular biological analyses revealed that GFD1 encoded a MATE transporter and expressed high in vascular tissues of the stem, spikelet hulls and rachilla, but low in the leaf, controlling carbohydrate partitioning in the stem and grain but not in the leaf
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	transporter	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	transporter	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Map-based cloning and molecular biological analyses revealed that GFD1 encoded a MATE transporter and expressed high in vascular tissues of the stem, spikelet hulls and rachilla, but low in the leaf, controlling carbohydrate partitioning in the stem and grain but not in the leaf
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	sugar	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	sugar	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 GFD1 protein was partially localized on the plasma membrane and in the Golgi apparatus, and was finally verified to interact with two sugar transporters, OsSWEET4 and OsSUT2
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	plasma membrane	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 GFD1 protein was partially localized on the plasma membrane and in the Golgi apparatus, and was finally verified to interact with two sugar transporters, OsSWEET4 and OsSUT2
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain-filling	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	grain-filling	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	sugar transport	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.
GS3.1|DG1|GFD1	Os03g0229500	LOC_Os03g12790	sugar transport	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 GFD1 protein was partially localized on the plasma membrane and in the Golgi apparatus, and was finally verified to interact with two sugar transporters, OsSWEET4 and OsSUT2
GS5	Os05g0158500	LOC_Os05g06660	grain width	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	We showed that the quantitative trait locus (QTL) GS5 in rice controls grain size by regulating grain width, filling and weight
GS5	Os05g0158500	LOC_Os05g06660	grain size	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	We showed that the quantitative trait locus (QTL) GS5 in rice controls grain size by regulating grain width, filling and weight
GS5	Os05g0158500	LOC_Os05g06660	grain size	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	GS5 encodes a putative serine carboxypeptidase and functions as a positive regulator of grain size, such that higher expression of GS5 is correlated with larger grain size
GS5	Os05g0158500	LOC_Os05g06660	grain size	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	The results suggest that natural variation in GS5 contributes to grain size diversity in rice and may be useful in improving yield in rice and, potentially, other crops(2)
GS5	Os05g0158500	LOC_Os05g06660	grain size	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	Natural variation in GS5 plays an important role in regulating grain size and yield in rice
GS5	Os05g0158500	LOC_Os05g06660	grain	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	We showed that the quantitative trait locus (QTL) GS5 in rice controls grain size by regulating grain width, filling and weight
GS5	Os05g0158500	LOC_Os05g06660	grain	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	GS5 encodes a putative serine carboxypeptidase and functions as a positive regulator of grain size, such that higher expression of GS5 is correlated with larger grain size
GS5	Os05g0158500	LOC_Os05g06660	grain	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	The results suggest that natural variation in GS5 contributes to grain size diversity in rice and may be useful in improving yield in rice and, potentially, other crops(2)
GS5	Os05g0158500	LOC_Os05g06660	grain	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	Natural variation in GS5 plays an important role in regulating grain size and yield in rice
GS5	Os05g0158500	LOC_Os05g06660	yield	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	The results suggest that natural variation in GS5 contributes to grain size diversity in rice and may be useful in improving yield in rice and, potentially, other crops(2)
GS5	Os05g0158500	LOC_Os05g06660	yield	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	Natural variation in GS5 plays an important role in regulating grain size and yield in rice
GS5	Os05g0158500	LOC_Os05g06660	grain	Differential expression of GS5 regulates grain size in rice.	Differential expression of GS5 regulates grain size in rice.
GS5	Os05g0158500	LOC_Os05g06660	grain	Differential expression of GS5 regulates grain size in rice.	GS5 is a positive regulator of grain size such that grain width, filling, and weight are correlated with its expression level
GS5	Os05g0158500	LOC_Os05g06660	grain	Differential expression of GS5 regulates grain size in rice.	Previous work suggested that polymorphisms of GS5 in the promoter region might be responsible for the variation in grain size
GS5	Os05g0158500	LOC_Os05g06660	grain	Differential expression of GS5 regulates grain size in rice.	Enhanced expression of GS5 competitively inhibits the interaction between OsBAK1-7 and OsMSBP1 by occupying the extracellular leucine-rich repeat (LRR) domain of OsBAK1-7, thus preventing OsBAK1-7 from endocytosis caused by interacting with OsMSBP1, providing an explanation for the positive association between grain size and GS5 expression
GS5	Os05g0158500	LOC_Os05g06660	grain	Differential expression of GS5 regulates grain size in rice.	These results advanced our understanding of the molecular mechanism by which GS5 controls grain size
GS5	Os05g0158500	LOC_Os05g06660	grain size	Differential expression of GS5 regulates grain size in rice.	Differential expression of GS5 regulates grain size in rice.
GS5	Os05g0158500	LOC_Os05g06660	grain size	Differential expression of GS5 regulates grain size in rice.	GS5 is a positive regulator of grain size such that grain width, filling, and weight are correlated with its expression level
GS5	Os05g0158500	LOC_Os05g06660	grain size	Differential expression of GS5 regulates grain size in rice.	Previous work suggested that polymorphisms of GS5 in the promoter region might be responsible for the variation in grain size
GS5	Os05g0158500	LOC_Os05g06660	grain size	Differential expression of GS5 regulates grain size in rice.	Enhanced expression of GS5 competitively inhibits the interaction between OsBAK1-7 and OsMSBP1 by occupying the extracellular leucine-rich repeat (LRR) domain of OsBAK1-7, thus preventing OsBAK1-7 from endocytosis caused by interacting with OsMSBP1, providing an explanation for the positive association between grain size and GS5 expression
GS5	Os05g0158500	LOC_Os05g06660	grain size	Differential expression of GS5 regulates grain size in rice.	These results advanced our understanding of the molecular mechanism by which GS5 controls grain size
GS5	Os05g0158500	LOC_Os05g06660	grain width	Differential expression of GS5 regulates grain size in rice.	GS5 is a positive regulator of grain size such that grain width, filling, and weight are correlated with its expression level
GS5	Os05g0158500	LOC_Os05g06660	abscisic acid	Differential expression of GS5 regulates grain size in rice.	These two polymorphs altered the responses of the GS5 alleles to abscisic acid (ABA) treatments, resulting in higher expression of GS5-1 than of GS5-2 in developing young panicles
GS9	Os09g0448500	LOC_Os09g27590	grain	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.
GS9	Os09g0448500	LOC_Os09g27590	grain	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	Genetic interaction analysis reveals that GS9 functions independently from other previously identified grain size genes
GS9	Os09g0448500	LOC_Os09g27590	grain	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	Introducing the gs9 allele into elite rice cultivars significantly improves grain shape and appearance quality
GS9	Os09g0448500	LOC_Os09g27590	map-based cloning	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	Here, we identify GS9 (Grain Shape Gene on Chromosome 9) gene by map-based cloning
GS9	Os09g0448500	LOC_Os09g27590	grain size	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	Genetic interaction analysis reveals that GS9 functions independently from other previously identified grain size genes
GS9	Os09g0448500	LOC_Os09g27590	transcriptional activator	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.
GS9	Os09g0448500	LOC_Os09g27590	quality	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	Introducing the gs9 allele into elite rice cultivars significantly improves grain shape and appearance quality
GSA1	Os03g0757500	LOC_Os03g55040	auxin	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 regulates grain size by modulating cell proliferation and expansion, which are regulated by flavonoid-mediated auxin levels and related gene expression
GSA1	Os03g0757500	LOC_Os03g55040	grain	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 regulates grain size by modulating cell proliferation and expansion, which are regulated by flavonoid-mediated auxin levels and related gene expression
GSA1	Os03g0757500	LOC_Os03g55040	tolerance	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 overexpression results in larger grains and enhanced abiotic stress tolerance
GSA1	Os03g0757500	LOC_Os03g55040	grain size	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 regulates grain size by modulating cell proliferation and expansion, which are regulated by flavonoid-mediated auxin levels and related gene expression
GSA1	Os03g0757500	LOC_Os03g55040	abiotic stress	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 is required for the redirection of metabolic flux from lignin biosynthesis to flavonoid biosynthesis under abiotic stress and the accumulation of flavonoid glycosides, which protect rice against abiotic stress
GSA1	Os03g0757500	LOC_Os03g55040	abiotic stress	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 overexpression results in larger grains and enhanced abiotic stress tolerance
GSA1	Os03g0757500	LOC_Os03g55040	stress	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 is required for the redirection of metabolic flux from lignin biosynthesis to flavonoid biosynthesis under abiotic stress and the accumulation of flavonoid glycosides, which protect rice against abiotic stress
GSA1	Os03g0757500	LOC_Os03g55040	stress	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 overexpression results in larger grains and enhanced abiotic stress tolerance
GSA1	Os03g0757500	LOC_Os03g55040	biotic stress	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 is required for the redirection of metabolic flux from lignin biosynthesis to flavonoid biosynthesis under abiotic stress and the accumulation of flavonoid glycosides, which protect rice against abiotic stress
GSA1	Os03g0757500	LOC_Os03g55040	biotic stress	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 overexpression results in larger grains and enhanced abiotic stress tolerance
GSA1	Os03g0757500	LOC_Os03g55040	cell proliferation	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 regulates grain size by modulating cell proliferation and expansion, which are regulated by flavonoid-mediated auxin levels and related gene expression
GSA1	Os03g0757500	LOC_Os03g55040	lignin	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 is required for the redirection of metabolic flux from lignin biosynthesis to flavonoid biosynthesis under abiotic stress and the accumulation of flavonoid glycosides, which protect rice against abiotic stress
GSA1	Os03g0757500	LOC_Os03g55040	flavonoid	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 is required for the redirection of metabolic flux from lignin biosynthesis to flavonoid biosynthesis under abiotic stress and the accumulation of flavonoid glycosides, which protect rice against abiotic stress
GSA1	Os03g0757500	LOC_Os03g55040	lignin biosynthesis	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 is required for the redirection of metabolic flux from lignin biosynthesis to flavonoid biosynthesis under abiotic stress and the accumulation of flavonoid glycosides, which protect rice against abiotic stress
GSA1	Os03g0757500	LOC_Os03g55040	stress tolerance	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 overexpression results in larger grains and enhanced abiotic stress tolerance
GSA1	Os03g0757500	LOC_Os03g55040	glucosyltransferase	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice	GSA1 encodes a UDP-glucosyltransferase, which exhibits glucosyltransferase activity toward flavonoids and monolignols
GSD1	Os04g0620200	LOC_Os04g52920	grain setting	Grain setting defect 1, encoding a remorin protein, affects the grain setting in rice through regulating plasmodesmatal conductance	Grain setting defect 1, encoding a remorin protein, affects the grain setting in rice through regulating plasmodesmatal conductance
GSD1	Os04g0620200	LOC_Os04g52920	photoassimilate translocation	Grain setting defect 1, encoding a remorin protein, affects the grain setting in rice through regulating plasmodesmatal conductance	Together, our results suggest that GSD1 may play a role in regulating photoassimilate translocation through the symplastic pathway to impact grain setting in rice.
GSD1	Os04g0620200	LOC_Os04g52920	plasma membrane	Grain setting defect 1, encoding a remorin protein, affects the grain setting in rice through regulating plasmodesmatal conductance	GSD1 was found to be specifically expressed in the plasma membrane and plasmodesmata (PD) of phloem companion cells.
GSD1	Os04g0620200	LOC_Os04g52920	grain filling	Grain setting defect 1, encoding a remorin protein, affects the grain setting in rice through regulating plasmodesmatal conductance	Experimental evidence suggests the phenotype of the gsd1-D mutant is caused by defects in the grain filling process as a result of the impaired transport of carbohydrates from the photosynthetic site to the phloem.
GSE5	Os05g0187500	LOC_Os05g09520	spikelet	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	We showed that GSE5 regulates grain size predominantly by influencing cell proliferation in spikelet hulls
GSE5	Os05g0187500	LOC_Os05g09520	grain	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.
GSE5	Os05g0187500	LOC_Os05g09520	grain	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	We showed that GSE5 regulates grain size predominantly by influencing cell proliferation in spikelet hulls
GSE5	Os05g0187500	LOC_Os05g09520	grain	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	Taken together, our results indicate that the previously unrecognized GSE5 gene in the qSW5/GW5 locus that is widely utilized by rice breeders controls grain size and reveal that natural variation in the promoter region of GSE5 contributes to grain size diversity in rice
GSE5	Os05g0187500	LOC_Os05g09520	domestication	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	Further analyses indicate that wild rice accessions contain all the three haplotypes of GSE5, suggesting that the GSE5 haplotypes present in cultivated rice are likely to have originated from different wild rice accessions during rice domestication
GSE5	Os05g0187500	LOC_Os05g09520	grain size	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.
GSE5	Os05g0187500	LOC_Os05g09520	grain size	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	We showed that GSE5 regulates grain size predominantly by influencing cell proliferation in spikelet hulls
GSE5	Os05g0187500	LOC_Os05g09520	grain size	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	Taken together, our results indicate that the previously unrecognized GSE5 gene in the qSW5/GW5 locus that is widely utilized by rice breeders controls grain size and reveal that natural variation in the promoter region of GSE5 contributes to grain size diversity in rice
GSE5	Os05g0187500	LOC_Os05g09520	plasma membrane	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	GSE5 encodes a plasma membrane-associated protein with IQ domains (IQD), which interacts with the rice calmodulin protein, OsCaM1-1
GSE5	Os05g0187500	LOC_Os05g09520	cell proliferation	Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice.	We showed that GSE5 regulates grain size predominantly by influencing cell proliferation in spikelet hulls
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	 BR 	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	Overexpression of GSK2 (Go) led to plants with typical BR loss-of-function phenotypes, and suppression of GSK2 resulted in enhanced BR signaling phenotypes
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	 BR 	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	Suppression of DLT can enhance the phenotypes of BR receptor mutant d61-1, and overexpression of DLT obviously suppressed the BR loss-of-function phenotypes of both d61-1 and Go, suggesting that DLT functions downstream of GSK2 to modulate BR responses
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	 BR 	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	These results demonstrate that DLT is a GSK2 substrate, further reinforcing that the BIN2/GSK2 kinase has multiple substrates that carry out various BR responses
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	BR signaling	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice	Overexpression of GSK2 (Go) led to plants with typical BR loss-of-function phenotypes, and suppression of GSK2 resulted in enhanced BR signaling phenotypes
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	domestication	Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.	 Together, these results suggest that OsGSK2 is selected to regulate mesocotyl length by coordinating strigolactone and brassinosteroid signaling during domestication
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	brassinosteroid	Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.	 Together, these results suggest that OsGSK2 is selected to regulate mesocotyl length by coordinating strigolactone and brassinosteroid signaling during domestication
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	Brassinosteroid	Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.	 Together, these results suggest that OsGSK2 is selected to regulate mesocotyl length by coordinating strigolactone and brassinosteroid signaling during domestication
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	Kinase	Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.	 Variations in the coding region of OsGSK2 alter its kinase activity
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	Brassinosteroid Signaling	Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.	 Together, these results suggest that OsGSK2 is selected to regulate mesocotyl length by coordinating strigolactone and brassinosteroid signaling during domestication
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	strigolactone	Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.	 Together, these results suggest that OsGSK2 is selected to regulate mesocotyl length by coordinating strigolactone and brassinosteroid signaling during domestication
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	Kinase	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	 In addition, the stability of OsPUB24 was downregulated by BL and bikinin, an inhibitor of OsSK22 (Oryza sativa Shaggy/GSK3-like kinase 22)
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	defense	Rice stripe virus suppresses jasmonic acid-mediated resistance by hijacking brassinosteroid signaling pathway in rice	 OsGSK2 physically interacts with OsMYC2, resulting in the degradation of OsMYC2 by phosphorylation and reduces JA-mediated defense to facilitate virus infection
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	Kinase	The Histone Deacetylase 1/ GSK3/SHAGGY-Like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls Lateral Root Formation in Rice.	 Brassinosteroid treatment increased the LR number, as did mutation of GSK3/SHAGGY-like kinase 2 (OsGSK2), whereas overexpression of OsGSK2 decreased the LR number
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	brassinosteroid	The Histone Deacetylase 1/ GSK3/SHAGGY-Like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls Lateral Root Formation in Rice.	 Brassinosteroid treatment increased the LR number, as did mutation of GSK3/SHAGGY-like kinase 2 (OsGSK2), whereas overexpression of OsGSK2 decreased the LR number
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	Brassinosteroid	The Histone Deacetylase 1/ GSK3/SHAGGY-Like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls Lateral Root Formation in Rice.	 Brassinosteroid treatment increased the LR number, as did mutation of GSK3/SHAGGY-like kinase 2 (OsGSK2), whereas overexpression of OsGSK2 decreased the LR number
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	kinase	The Histone Deacetylase 1/ GSK3/SHAGGY-Like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls Lateral Root Formation in Rice.	 Brassinosteroid treatment increased the LR number, as did mutation of GSK3/SHAGGY-like kinase 2 (OsGSK2), whereas overexpression of OsGSK2 decreased the LR number
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	resistant	The Histone Deacetylase 1/ GSK3/SHAGGY-Like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls Lateral Root Formation in Rice.	 OsGSK2 deacetylation attenuated the interaction between OsGSK2 and BRASSINAZOLE RESISTANT 1 (OsBZR1), leading to accumulation of OsBZR1
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	BR	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In addition, inhibition of BR synthesis promotes GSK2 accumulation and suppresses TUD1 stability
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	BR	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 Furthermore, the GSK2 degradation process is largely impaired in tud1 in response to BR
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	BR	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In conclusion, our study demonstrates the role of TUD1 in BR-induced GSK2 degradation, thereby advancing our understanding of a critical step in the BR signaling pathway of rice
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	BR signaling	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In conclusion, our study demonstrates the role of TUD1 in BR-induced GSK2 degradation, thereby advancing our understanding of a critical step in the BR signaling pathway of rice
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	 BR 	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In addition, inhibition of BR synthesis promotes GSK2 accumulation and suppresses TUD1 stability
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	 BR 	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In conclusion, our study demonstrates the role of TUD1 in BR-induced GSK2 degradation, thereby advancing our understanding of a critical step in the BR signaling pathway of rice
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	Ubiquitin	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	grain	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	grain size	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	BR	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	architecture	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	 BR 	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
GSK2|OsGSK2|OsSK22	Os05g0207500	LOC_Os05g11730	plant architecture	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
GSL5|OsGSL5	Os06g0182300	LOC_Os06g08380	meiosis	GLUCAN SYNTHASE-LIKE 5 (GSL5) plays an essential role in male fertility by regulating callose metabolism during microsporogenesis in rice.	These data suggest that the callose synthase encoded by GSL5 plays a vital role in microspore development during late meiosis and is essential for male fertility in rice
GSL5|OsGSL5	Os06g0182300	LOC_Os06g08380	fertility	GLUCAN SYNTHASE-LIKE 5 (GSL5) plays an essential role in male fertility by regulating callose metabolism during microsporogenesis in rice.	These data suggest that the callose synthase encoded by GSL5 plays a vital role in microspore development during late meiosis and is essential for male fertility in rice
GSL5|OsGSL5	Os06g0182300	LOC_Os06g08380	microspore	GLUCAN SYNTHASE-LIKE 5 (GSL5) plays an essential role in male fertility by regulating callose metabolism during microsporogenesis in rice.	These data suggest that the callose synthase encoded by GSL5 plays a vital role in microspore development during late meiosis and is essential for male fertility in rice
GSL5|OsGSL5	Os06g0182300	LOC_Os06g08380	development	GLUCAN SYNTHASE-LIKE 5 (GSL5) plays an essential role in male fertility by regulating callose metabolism during microsporogenesis in rice.	These data suggest that the callose synthase encoded by GSL5 plays a vital role in microspore development during late meiosis and is essential for male fertility in rice
GSL5|OsGSL5	Os06g0182300	LOC_Os06g08380	meiosis	Rice GLUCAN SYNTHASE-LIKE5 promotes anther callose deposition to maintain meiosis initiation and progression.	 In Osgsl5 mutant anthers mostly lacking callose deposition, aberrant PMCs accompanied by aggregated, unpaired, or multivalent chromosomes were frequently observed and, furthermore, a considerable number of mutant PMCs had untimely progress into meiosis compared to that of wild-type PMCs
GSL5|OsGSL5	Os06g0182300	LOC_Os06g08380	meiosis	Rice GLUCAN SYNTHASE-LIKE5 promotes anther callose deposition to maintain meiosis initiation and progression.	 Immunostaining of meiosis-specific protein HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS2 in premeiotic PMCs revealed precocious meiosis entry in Osgsl5 anthers
GT-2	Os04g0541100	LOC_Os04g45750	transcription factor	GT-2: a transcription factor with twin autonomous DNA-binding domains of closely related but different target sequence specificity	GT-2: a transcription factor with twin autonomous DNA-binding domains of closely related but different target sequence specificity
GTE4|OsGTE4	Os02g0250300	LOC_Os02g15220	cell cycle	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	FSM/FAS1 and GTE4 are known in rice and Arabidopsis to be involved in the maintenance of root meristem through chromatin remodelling and cell cycle regulation respectively
GTE4|OsGTE4	Os02g0250300	LOC_Os02g15220	transcription factor	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Otherwise, three CRL1-dependent auxin-responsive genes: FSM (FLATENNED SHOOT MERISTEM)/FAS1 (FASCIATA1), GTE4 (GENERAL TRANSCRIPTION FACTOR GROUP E4) and MAP (MICROTUBULE-ASSOCIATED PROTEIN) were identified
GTE4|OsGTE4	Os02g0250300	LOC_Os02g15220	shoot	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Otherwise, three CRL1-dependent auxin-responsive genes: FSM (FLATENNED SHOOT MERISTEM)/FAS1 (FASCIATA1), GTE4 (GENERAL TRANSCRIPTION FACTOR GROUP E4) and MAP (MICROTUBULE-ASSOCIATED PROTEIN) were identified
GTE4|OsGTE4	Os02g0250300	LOC_Os02g15220	auxin	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Otherwise, three CRL1-dependent auxin-responsive genes: FSM (FLATENNED SHOOT MERISTEM)/FAS1 (FASCIATA1), GTE4 (GENERAL TRANSCRIPTION FACTOR GROUP E4) and MAP (MICROTUBULE-ASSOCIATED PROTEIN) were identified
GTE4|OsGTE4	Os02g0250300	LOC_Os02g15220	auxin	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Nevertheless some genes, FAS1/FSM, GTE4 and MAP, require CRL1 to be induced by auxin suggesting that they are likely directly regulated by CRL1
GTE4|OsGTE4	Os02g0250300	LOC_Os02g15220	root	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	FSM/FAS1 and GTE4 are known in rice and Arabidopsis to be involved in the maintenance of root meristem through chromatin remodelling and cell cycle regulation respectively
GTE4|OsGTE4	Os02g0250300	LOC_Os02g15220	meristem	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Otherwise, three CRL1-dependent auxin-responsive genes: FSM (FLATENNED SHOOT MERISTEM)/FAS1 (FASCIATA1), GTE4 (GENERAL TRANSCRIPTION FACTOR GROUP E4) and MAP (MICROTUBULE-ASSOCIATED PROTEIN) were identified
GTE4|OsGTE4	Os02g0250300	LOC_Os02g15220	meristem	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	FSM/FAS1 and GTE4 are known in rice and Arabidopsis to be involved in the maintenance of root meristem through chromatin remodelling and cell cycle regulation respectively
GUDK	Os03g0179400	LOC_Os03g08170	grain	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	The gudk mutants interestingly showed a significant reduction in grain yield, both under normal well-watered conditions and under drought stress at the reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	seedling	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Loss-of-function gudk mutant lines exhibit sensitivity to salinity, osmotic stress, and abscisic acid treatment at the seedling stage, and a reduction in photosynthesis and plant biomass under controlled drought stress at the vegetative stage
GUDK	Os03g0179400	LOC_Os03g08170	transcription factor	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Phosphoproteome profiling of the mutant followed by in vitro assays identified the transcription factor APETALA2/ETHYLENE RESPONSE FACTOR OsAP37 as a phosphorylation target of GUDK
GUDK	Os03g0179400	LOC_Os03g08170	grain yield	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	The gudk mutants interestingly showed a significant reduction in grain yield, both under normal well-watered conditions and under drought stress at the reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	yield	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	We propose that GUDK mediates drought stress signaling through phosphorylation and activation of OsAP37, resulting in transcriptional activation of stress-regulated genes, which impart tolerance and improve yield under drought
GUDK	Os03g0179400	LOC_Os03g08170	drought	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Loss-of-function gudk mutant lines exhibit sensitivity to salinity, osmotic stress, and abscisic acid treatment at the seedling stage, and a reduction in photosynthesis and plant biomass under controlled drought stress at the vegetative stage
GUDK	Os03g0179400	LOC_Os03g08170	drought	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	The gudk mutants interestingly showed a significant reduction in grain yield, both under normal well-watered conditions and under drought stress at the reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	drought	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	We propose that GUDK mediates drought stress signaling through phosphorylation and activation of OsAP37, resulting in transcriptional activation of stress-regulated genes, which impart tolerance and improve yield under drought
GUDK	Os03g0179400	LOC_Os03g08170	vegetative	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Loss-of-function gudk mutant lines exhibit sensitivity to salinity, osmotic stress, and abscisic acid treatment at the seedling stage, and a reduction in photosynthesis and plant biomass under controlled drought stress at the vegetative stage
GUDK	Os03g0179400	LOC_Os03g08170	reproductive	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	The gudk mutants interestingly showed a significant reduction in grain yield, both under normal well-watered conditions and under drought stress at the reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	photosynthesis	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Loss-of-function gudk mutant lines exhibit sensitivity to salinity, osmotic stress, and abscisic acid treatment at the seedling stage, and a reduction in photosynthesis and plant biomass under controlled drought stress at the vegetative stage
GUDK	Os03g0179400	LOC_Os03g08170	tolerance	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	We propose that GUDK mediates drought stress signaling through phosphorylation and activation of OsAP37, resulting in transcriptional activation of stress-regulated genes, which impart tolerance and improve yield under drought
GUDK	Os03g0179400	LOC_Os03g08170	stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Loss-of-function gudk mutant lines exhibit sensitivity to salinity, osmotic stress, and abscisic acid treatment at the seedling stage, and a reduction in photosynthesis and plant biomass under controlled drought stress at the vegetative stage
GUDK	Os03g0179400	LOC_Os03g08170	stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	The gudk mutants interestingly showed a significant reduction in grain yield, both under normal well-watered conditions and under drought stress at the reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Our transactivation assays confirmed that GUDK is required for activation of stress genes by OsAP37
GUDK	Os03g0179400	LOC_Os03g08170	stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	We propose that GUDK mediates drought stress signaling through phosphorylation and activation of OsAP37, resulting in transcriptional activation of stress-regulated genes, which impart tolerance and improve yield under drought
GUDK	Os03g0179400	LOC_Os03g08170	biomass	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Loss-of-function gudk mutant lines exhibit sensitivity to salinity, osmotic stress, and abscisic acid treatment at the seedling stage, and a reduction in photosynthesis and plant biomass under controlled drought stress at the vegetative stage
GUDK	Os03g0179400	LOC_Os03g08170	drought stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Loss-of-function gudk mutant lines exhibit sensitivity to salinity, osmotic stress, and abscisic acid treatment at the seedling stage, and a reduction in photosynthesis and plant biomass under controlled drought stress at the vegetative stage
GUDK	Os03g0179400	LOC_Os03g08170	drought stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	The gudk mutants interestingly showed a significant reduction in grain yield, both under normal well-watered conditions and under drought stress at the reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	drought stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	We propose that GUDK mediates drought stress signaling through phosphorylation and activation of OsAP37, resulting in transcriptional activation of stress-regulated genes, which impart tolerance and improve yield under drought
GUDK	Os03g0179400	LOC_Os03g08170	drought stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Loss-of-function gudk mutant lines exhibit sensitivity to salinity, osmotic stress, and abscisic acid treatment at the seedling stage, and a reduction in photosynthesis and plant biomass under controlled drought stress at the vegetative stage
GUDK	Os03g0179400	LOC_Os03g08170	drought stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	The gudk mutants interestingly showed a significant reduction in grain yield, both under normal well-watered conditions and under drought stress at the reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	drought stress	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	We propose that GUDK mediates drought stress signaling through phosphorylation and activation of OsAP37, resulting in transcriptional activation of stress-regulated genes, which impart tolerance and improve yield under drought
GUDK	Os03g0179400	LOC_Os03g08170	ethylene response	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Phosphoproteome profiling of the mutant followed by in vitro assays identified the transcription factor APETALA2/ETHYLENE RESPONSE FACTOR OsAP37 as a phosphorylation target of GUDK
GUDK	Os03g0179400	LOC_Os03g08170	abscisic acid	Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions.	Loss-of-function gudk mutant lines exhibit sensitivity to salinity, osmotic stress, and abscisic acid treatment at the seedling stage, and a reduction in photosynthesis and plant biomass under controlled drought stress at the vegetative stage
GUDK	Os03g0179400	LOC_Os03g08170	seedlings	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	GUDK is induced under several stresses and its loss-of-function increased the sensitivity of rice seedlings to salinity, osmotic stress, and abscisic acid treatment
GUDK	Os03g0179400	LOC_Os03g08170	grain	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	grain	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	Thus, our results suggest that GUDK has the potential to regulate grain yield both under favorable and unfavorable conditions
GUDK	Os03g0179400	LOC_Os03g08170	drought	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	tolerance	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	grain yield	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	grain yield	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	Thus, our results suggest that GUDK has the potential to regulate grain yield both under favorable and unfavorable conditions
GUDK	Os03g0179400	LOC_Os03g08170	yield	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	yield	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	Thus, our results suggest that GUDK has the potential to regulate grain yield both under favorable and unfavorable conditions
GUDK	Os03g0179400	LOC_Os03g08170	vegetative	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	reproductive	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	stress	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	stress	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	Gene co-expression analysis supports the role of GUDK in regulating important biological processes both under control and stress conditions
GUDK	Os03g0179400	LOC_Os03g08170	drought stress	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	drought stress	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	In addition to reduced tolerance of gudk mutant plants to drought stress at vegetative stage, a significant reduction in grain yield was observed under well-watered and drought stress conditions at reproductive stage
GUDK	Os03g0179400	LOC_Os03g08170	abscisic acid	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	GUDK is induced under several stresses and its loss-of-function increased the sensitivity of rice seedlings to salinity, osmotic stress, and abscisic acid treatment
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	cell division	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	Our results suggest that GW2 negatively regulates cell division by targeting its substrate(s) to proteasomes for regulated proteolysis
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	The BSG1 mutation affected the expression of genes potentially involved in the cell cycle and GW2, an important regulator of grain size in rice
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	cell cycle	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	The BSG1 mutation affected the expression of genes potentially involved in the cell cycle and GW2, an important regulator of grain size in rice
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	Here, we report the cloning and characterization of GW2, a new QTL that controls rice grain width and weight
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	Loss of GW2 function increased cell numbers, resulting in a larger (wider) spikelet hull, and it accelerated the grain milk filling rate, resulting in enhanced grain width, weight and yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	The functional characterization of GW2 provides insight into the mechanism of seed development and is a potential tool for improving grain yield in crops
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain yield	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	The functional characterization of GW2 provides insight into the mechanism of seed development and is a potential tool for improving grain yield in crops
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	spikelet	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	Loss of GW2 function increased cell numbers, resulting in a larger (wider) spikelet hull, and it accelerated the grain milk filling rate, resulting in enhanced grain width, weight and yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	The functional characterization of GW2 provides insight into the mechanism of seed development and is a potential tool for improving grain yield in crops
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain width	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	Here, we report the cloning and characterization of GW2, a new QTL that controls rice grain width and weight
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain width	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	Loss of GW2 function increased cell numbers, resulting in a larger (wider) spikelet hull, and it accelerated the grain milk filling rate, resulting in enhanced grain width, weight and yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed development	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	The functional characterization of GW2 provides insight into the mechanism of seed development and is a potential tool for improving grain yield in crops
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	yield	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	Loss of GW2 function increased cell numbers, resulting in a larger (wider) spikelet hull, and it accelerated the grain milk filling rate, resulting in enhanced grain width, weight and yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	yield	A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase	The functional characterization of GW2 provides insight into the mechanism of seed development and is a potential tool for improving grain yield in crops
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain size	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice	The BSG1 mutation affected the expression of genes potentially involved in the cell cycle and GW2, an important regulator of grain size in rice
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	These findings provide more insights into the molecular mechanisms underlying seed size development in rice and are likely to be useful for improving rice grain yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	Rice seed size is an important agronomic trait in determining the yield potential, and four seed size related genes (GS3, GW2, qSW5/GW5 and GIF1) have been cloned in rice so far
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	It was indicated that mutual interactions exist between the two genes, in which, qSW5 affecting seed length is masked by GS3 alleles, and GS3 affecting seed width is masked by qSW5 alleles
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	These findings provide more insights into the molecular mechanisms underlying seed size development in rice and are likely to be useful for improving rice grain yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain yield	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	These findings provide more insights into the molecular mechanisms underlying seed size development in rice and are likely to be useful for improving rice grain yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	yield	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	Rice seed size is an important agronomic trait in determining the yield potential, and four seed size related genes (GS3, GW2, qSW5/GW5 and GIF1) have been cloned in rice so far
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	yield	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	These findings provide more insights into the molecular mechanisms underlying seed size development in rice and are likely to be useful for improving rice grain yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	breeding	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	However, the relationship among these four genes is still unclear, which will impede the process of gene pyramiding breeding program to some extent
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed size	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed size	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	Rice seed size is an important agronomic trait in determining the yield potential, and four seed size related genes (GS3, GW2, qSW5/GW5 and GIF1) have been cloned in rice so far
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed size	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	These findings provide more insights into the molecular mechanisms underlying seed size development in rice and are likely to be useful for improving rice grain yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	GA	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	Additionally, GIF1 expression was found to be positively regulated by qSW5 but negatively by GW2 and GS3
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	development	Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	These findings provide more insights into the molecular mechanisms underlying seed size development in rice and are likely to be useful for improving rice grain yield
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	leaf	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	 Histochemical ��-glucuronidase staining showed strong expression of GW2 in leaf and root tissues but weak expression in leaf sheaths and internodes
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	root	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	 Histochemical ��-glucuronidase staining showed strong expression of GW2 in leaf and root tissues but weak expression in leaf sheaths and internodes
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Proteomic analysis showed that glyceraldehyde 3-phosphate dehydrogenase, chitinase 14 (CHT14), and phosphoglycerate kinase (PGK) accumulated to high levels in the seeds of the natural japonica rice mutant Oochikara, which carries a loss-of-function mutation in the grain width 2 (GW2) gene; GW2 encodes a RING-type E3 ubiquitin ligase
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	development	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Collectively, these results suggest that GW2 regulates seed size through direct interactions with proteins involved in carbohydrate metabolism by modulating their activity or stability and controlling disulfide bond formation in various proteins during seed development
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Collectively, these results suggest that GW2 regulates seed size through direct interactions with proteins involved in carbohydrate metabolism by modulating their activity or stability and controlling disulfide bond formation in various proteins during seed development
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	 Additionally, GW2 participates in vegetative as well as reproductive growth, and protects the seed from pathogen attack
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	vegetative	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	 Additionally, GW2 participates in vegetative as well as reproductive growth, and protects the seed from pathogen attack
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	reproductive	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	 Additionally, GW2 participates in vegetative as well as reproductive growth, and protects the seed from pathogen attack
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	Kinase	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Proteomic analysis showed that glyceraldehyde 3-phosphate dehydrogenase, chitinase 14 (CHT14), and phosphoglycerate kinase (PGK) accumulated to high levels in the seeds of the natural japonica rice mutant Oochikara, which carries a loss-of-function mutation in the grain width 2 (GW2) gene; GW2 encodes a RING-type E3 ubiquitin ligase
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed development	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Collectively, these results suggest that GW2 regulates seed size through direct interactions with proteins involved in carbohydrate metabolism by modulating their activity or stability and controlling disulfide bond formation in various proteins during seed development
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed size	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Collectively, these results suggest that GW2 regulates seed size through direct interactions with proteins involved in carbohydrate metabolism by modulating their activity or stability and controlling disulfide bond formation in various proteins during seed development
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	Ubiquitin	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Proteomic analysis showed that glyceraldehyde 3-phosphate dehydrogenase, chitinase 14 (CHT14), and phosphoglycerate kinase (PGK) accumulated to high levels in the seeds of the natural japonica rice mutant Oochikara, which carries a loss-of-function mutation in the grain width 2 (GW2) gene; GW2 encodes a RING-type E3 ubiquitin ligase
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain width	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Proteomic analysis showed that glyceraldehyde 3-phosphate dehydrogenase, chitinase 14 (CHT14), and phosphoglycerate kinase (PGK) accumulated to high levels in the seeds of the natural japonica rice mutant Oochikara, which carries a loss-of-function mutation in the grain width 2 (GW2) gene; GW2 encodes a RING-type E3 ubiquitin ligase
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	reproductive growth	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	 Additionally, GW2 participates in vegetative as well as reproductive growth, and protects the seed from pathogen attack
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	pathogen	Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	 Additionally, GW2 participates in vegetative as well as reproductive growth, and protects the seed from pathogen attack
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	Identification of Rice Large Grain Gene GW2 by Whole-Genome Sequencing of a Large Grain-Isogenic Line Integrated with Japonica Native Gene and Its Linkage Relationship with the Co-integrated Semidwarf Gene d60 on Chromosome 2.	Identification of Rice Large Grain Gene GW2 by Whole-Genome Sequencing of a Large Grain-Isogenic Line Integrated with Japonica Native Gene and Its Linkage Relationship with the Co-integrated Semidwarf Gene d60 on Chromosome 2.
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	Identification of Rice Large Grain Gene GW2 by Whole-Genome Sequencing of a Large Grain-Isogenic Line Integrated with Japonica Native Gene and Its Linkage Relationship with the Co-integrated Semidwarf Gene d60 on Chromosome 2.	 Whole-genome sequencing on a large grain isogenic Koshihikari (BC4F2) using next-generation sequencing (NGS) identified a single nucleotide deletion in GW2 gene, which is located 8
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	leaf	A RING-Type E3 Ubiquitin Ligase, OsGW2, Controls Chlorophyll Content and Dark-Induced Senescence in Rice.	 These results suggested that transcriptional regulation was associated with delayed senescence in CR2002, and RING-type E3 ubiquitin ligase GW2 was a positive regulator of leaf senescence in rice
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	leaf senescence	A RING-Type E3 Ubiquitin Ligase, OsGW2, Controls Chlorophyll Content and Dark-Induced Senescence in Rice.	 These results suggested that transcriptional regulation was associated with delayed senescence in CR2002, and RING-type E3 ubiquitin ligase GW2 was a positive regulator of leaf senescence in rice
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	senescence	A RING-Type E3 Ubiquitin Ligase, OsGW2, Controls Chlorophyll Content and Dark-Induced Senescence in Rice.	 To determine if GW2 is allelic to qCC2, a gw2-knockout mutant (gw2-ko) was examined using a dark-induced senescence assay
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	senescence	A RING-Type E3 Ubiquitin Ligase, OsGW2, Controls Chlorophyll Content and Dark-Induced Senescence in Rice.	 The association of the GW2 genotype with the delayed senescence phenotype was confirmed in an F2 population
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	senescence	A RING-Type E3 Ubiquitin Ligase, OsGW2, Controls Chlorophyll Content and Dark-Induced Senescence in Rice.	 These results suggested that transcriptional regulation was associated with delayed senescence in CR2002, and RING-type E3 ubiquitin ligase GW2 was a positive regulator of leaf senescence in rice
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	Ubiquitin	A RING-Type E3 Ubiquitin Ligase, OsGW2, Controls Chlorophyll Content and Dark-Induced Senescence in Rice.	 GW2 encoding E3 ubiquitin ligase in the qCC2 region was selected as a candidate for qCC2
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	Ubiquitin	A RING-Type E3 Ubiquitin Ligase, OsGW2, Controls Chlorophyll Content and Dark-Induced Senescence in Rice.	 These results suggested that transcriptional regulation was associated with delayed senescence in CR2002, and RING-type E3 ubiquitin ligase GW2 was a positive regulator of leaf senescence in rice
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	chlorophyll content	A RING-Type E3 Ubiquitin Ligase, OsGW2, Controls Chlorophyll Content and Dark-Induced Senescence in Rice.	A RING-Type E3 Ubiquitin Ligase, OsGW2, Controls Chlorophyll Content and Dark-Induced Senescence in Rice.
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	resistance	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)	 On the basis of these results, we conclude that gw2 mutation has the potential to be an important genetic resource with the ability to achieve a well-balanced and high-yielding effect that simultaneously improves grain productivity and lodging resistance
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)	 On the basis of these results, we conclude that gw2 mutation has the potential to be an important genetic resource with the ability to achieve a well-balanced and high-yielding effect that simultaneously improves grain productivity and lodging resistance
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	culm	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	lodging	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)	 On the basis of these results, we conclude that gw2 mutation has the potential to be an important genetic resource with the ability to achieve a well-balanced and high-yielding effect that simultaneously improves grain productivity and lodging resistance
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	lodging resistance	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)	 On the basis of these results, we conclude that gw2 mutation has the potential to be an important genetic resource with the ability to achieve a well-balanced and high-yielding effect that simultaneously improves grain productivity and lodging resistance
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain width	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)	gw2 mutation increases grain width and culm thickness in rice ( Oryza sativa L.)
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	RING-Type E3 Ubiqitin Ligase Barley Genes ( HvYrg1-2) Control Characteristics of Both Vegetative Organs and Seeds as Yield Components	Previously, studies on RING-type E3 ubiquitin ligases in cereals were preferentially focused on GW2 genes primarily controlling seed parameters in rice and wheat
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	RING-Type E3 Ubiqitin Ligase Barley Genes ( HvYrg1-2) Control Characteristics of Both Vegetative Organs and Seeds as Yield Components	 In summary we conclude that in contrast to inhibition of GW2 genes in rice and wheat plants, down-regulation of the barely HvYrg genes caused substantial changes in vegetative organs in addition to alteration of seed parameters
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	vegetative	RING-Type E3 Ubiqitin Ligase Barley Genes ( HvYrg1-2) Control Characteristics of Both Vegetative Organs and Seeds as Yield Components	 In summary we conclude that in contrast to inhibition of GW2 genes in rice and wheat plants, down-regulation of the barely HvYrg genes caused substantial changes in vegetative organs in addition to alteration of seed parameters
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	Ubiquitin	RING-Type E3 Ubiqitin Ligase Barley Genes ( HvYrg1-2) Control Characteristics of Both Vegetative Organs and Seeds as Yield Components	Previously, studies on RING-type E3 ubiquitin ligases in cereals were preferentially focused on GW2 genes primarily controlling seed parameters in rice and wheat
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	development	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 OsGW2 shows high expression in seed development stages and the protein localizes to the nucleus and cytoplasm
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	spikelet	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 Microscopic observation of grain morphology suggests that OsGW2 determines grain size by influencing both cell expansion and cell proliferation in spikelet hull
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	spikelet	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 These results reveal that OsGW2 is a negative regulator of grain size in indica rice and affects both cell number and cell size in spikelet hull
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 A natural variation (single-nucleotide polymorphism at the 346th position) in the functional domain-coding region of OsGW2 in japonica rice genotypes has been shown to cause an increase in grain width/weight in rice
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 In this study, we report that reduced expression of OsGW2 can alter grain size, even though natural sequence variation is not responsible for increased grain size in indica rice genotypes
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 Microscopic observation of grain morphology suggests that OsGW2 determines grain size by influencing both cell expansion and cell proliferation in spikelet hull
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 These results reveal that OsGW2 is a negative regulator of grain size in indica rice and affects both cell number and cell size in spikelet hull
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 OsGW2 shows high expression in seed development stages and the protein localizes to the nucleus and cytoplasm
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain size	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 In this study, we report that reduced expression of OsGW2 can alter grain size, even though natural sequence variation is not responsible for increased grain size in indica rice genotypes
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain size	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 Microscopic observation of grain morphology suggests that OsGW2 determines grain size by influencing both cell expansion and cell proliferation in spikelet hull
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain size	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 These results reveal that OsGW2 is a negative regulator of grain size in indica rice and affects both cell number and cell size in spikelet hull
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	cytoplasm	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 OsGW2 shows high expression in seed development stages and the protein localizes to the nucleus and cytoplasm
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	nucleus	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 OsGW2 shows high expression in seed development stages and the protein localizes to the nucleus and cytoplasm
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	seed development	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 OsGW2 shows high expression in seed development stages and the protein localizes to the nucleus and cytoplasm
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	cell proliferation	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 Microscopic observation of grain morphology suggests that OsGW2 determines grain size by influencing both cell expansion and cell proliferation in spikelet hull
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain width	Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice	 A natural variation (single-nucleotide polymorphism at the 346th position) in the functional domain-coding region of OsGW2 in japonica rice genotypes has been shown to cause an increase in grain width/weight in rice
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	grain	CRISPR-Cas9 mediated mutation in GRAIN WIDTH and WEIGHT2 (GW2) locus improves aleurone layer and grain nutritional quality in rice.	 Together, our findings indicate that GW2 may serve as a key regulator of improved grain architecture, grain nutritional quality and an important modulator of plant morphology
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	quality	CRISPR-Cas9 mediated mutation in GRAIN WIDTH and WEIGHT2 (GW2) locus improves aleurone layer and grain nutritional quality in rice.	 Together, our findings indicate that GW2 may serve as a key regulator of improved grain architecture, grain nutritional quality and an important modulator of plant morphology
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	nutritional quality	CRISPR-Cas9 mediated mutation in GRAIN WIDTH and WEIGHT2 (GW2) locus improves aleurone layer and grain nutritional quality in rice.	 Together, our findings indicate that GW2 may serve as a key regulator of improved grain architecture, grain nutritional quality and an important modulator of plant morphology
GW2|OsGW2	Os02g0244100	LOC_Os02g14720	nucleus	gw2.1, a new allele of GW2, improves grain weight and grain yield in rice.	 The GW2 protein was localized to the cell nucleus and membrane, and interacted with CHB705, a subunit of the chromatin remodeling complex
GW5|qSW5	None	None	cell division	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	Together, our results suggest that GW5 represents a major QTL underlying rice width and weight, and that it likely acts in the ubiquitin-proteasome pathway to regulate cell division during seed development
GW5|qSW5	None	None	grain width	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	We earlier identified a major QTL that controls rice grain width and weight, GW5, which was mapped to a recombination hotspot on rice chromosome 5
GW5|qSW5	None	None	grain width	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	To gain a better understanding of how GW5 controls rice grain width, we conducted fine mapping of this locus and uncovered a 1 212-bp deletion associated with the increased grain width in the rice cultivar Asominori, in comparison with the slender grain rice IR24
GW5|qSW5	None	None	grain width	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight
GW5|qSW5	None	None	flower	Deletion in a gene associated with grain size increased yields during rice domestication	Through fine mapping, complementation testing and association analysis, we found that a deletion in qSW5 resulted in a significant increase in sink size owing to an increase in cell number in the outer glume of the rice flower; this trait might have been selected by ancient humans to increase yield of rice grains
GW5|qSW5	None	None	grain	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	We earlier identified a major QTL that controls rice grain width and weight, GW5, which was mapped to a recombination hotspot on rice chromosome 5
GW5|qSW5	None	None	grain	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	To gain a better understanding of how GW5 controls rice grain width, we conducted fine mapping of this locus and uncovered a 1 212-bp deletion associated with the increased grain width in the rice cultivar Asominori, in comparison with the slender grain rice IR24
GW5|qSW5	None	None	grain	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	In addition, genotyping analyses of 46 rice cultivars revealed that this deletion is highly correlated with the grain-width phenotype, suggesting that the GW5 deletion might have been selected during rice domestication
GW5|qSW5	None	None	grain	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	This study provides novel insights into the molecular mechanisms controlling rice grain development and suggests that GW5 could serve as a potential tool for high-yield breeding of crops
GW5|qSW5	None	None	grain	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight
GW5|qSW5	None	None	grain width	Deletion in a gene associated with grain size increased yields during rice domestication	Here we report the cloning of a newly identified QTL, qSW5 (QTL for seed width on chromosome 5), involved in the determination of grain width in rice
GW5|qSW5	None	None	yield	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	This study provides novel insights into the molecular mechanisms controlling rice grain development and suggests that GW5 could serve as a potential tool for high-yield breeding of crops
GW5|qSW5	None	None	domestication	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	In addition, genotyping analyses of 46 rice cultivars revealed that this deletion is highly correlated with the grain-width phenotype, suggesting that the GW5 deletion might have been selected during rice domestication
GW5|qSW5	None	None	seed	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	Together, our results suggest that GW5 represents a major QTL underlying rice width and weight, and that it likely acts in the ubiquitin-proteasome pathway to regulate cell division during seed development
GW5|qSW5	None	None	grain	Deletion in a gene associated with grain size increased yields during rice domestication	Here we report the cloning of a newly identified QTL, qSW5 (QTL for seed width on chromosome 5), involved in the determination of grain width in rice
GW5|qSW5	None	None	grain	Deletion in a gene associated with grain size increased yields during rice domestication	Through fine mapping, complementation testing and association analysis, we found that a deletion in qSW5 resulted in a significant increase in sink size owing to an increase in cell number in the outer glume of the rice flower; this trait might have been selected by ancient humans to increase yield of rice grains
GW5|qSW5	None	None	domestication	Deletion in a gene associated with grain size increased yields during rice domestication	These analyses show that the qSW5 deletion had an important historical role in artificial selection, propagation of cultivation and natural crossings in rice domestication, and shed light on how the rice genome was domesticated
GW5|qSW5	None	None	yield	Deletion in a gene associated with grain size increased yields during rice domestication	Through fine mapping, complementation testing and association analysis, we found that a deletion in qSW5 resulted in a significant increase in sink size owing to an increase in cell number in the outer glume of the rice flower; this trait might have been selected by ancient humans to increase yield of rice grains
GW5|qSW5	None	None	breeding	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	This study provides novel insights into the molecular mechanisms controlling rice grain development and suggests that GW5 could serve as a potential tool for high-yield breeding of crops
GW5|qSW5	None	None	seed development	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	Together, our results suggest that GW5 represents a major QTL underlying rice width and weight, and that it likely acts in the ubiquitin-proteasome pathway to regulate cell division during seed development
GW5|qSW5	None	None	seed	Deletion in a gene associated with grain size increased yields during rice domestication	Here we report the cloning of a newly identified QTL, qSW5 (QTL for seed width on chromosome 5), involved in the determination of grain width in rice
GW5|qSW5	None	None	growth	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 protein is localized to the plasma membrane and can physically interact with and repress the kinase activity of rice GSK2 (glycogen synthase kinase 2), a homologue of Arabidopsis BIN2 (BRASSINOSTEROID INSENSITIVE2) kinase, resulting in accumulation of unphosphorylated OsBZR1 (Oryza sativa BRASSINAZOLE RESISTANT1) and DLT (DWARF AND LOW-TILLERING) proteins in the nucleus to mediate brassinosteroid (BR)-responsive gene expression and growth responses (including grain width and weight)
GW5|qSW5	None	None	grain	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.
GW5|qSW5	None	None	grain	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	We provide evidence that the 1,212-bp deletion affects grain width most likely through influencing the expression levels of GW5
GW5|qSW5	None	None	grain	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 protein is localized to the plasma membrane and can physically interact with and repress the kinase activity of rice GSK2 (glycogen synthase kinase 2), a homologue of Arabidopsis BIN2 (BRASSINOSTEROID INSENSITIVE2) kinase, resulting in accumulation of unphosphorylated OsBZR1 (Oryza sativa BRASSINAZOLE RESISTANT1) and DLT (DWARF AND LOW-TILLERING) proteins in the nucleus to mediate brassinosteroid (BR)-responsive gene expression and growth responses (including grain width and weight)
GW5|qSW5	None	None	grain	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	Our results suggest that GW5 is a novel positive regulator of BR signalling and a viable target for genetic manipulation to improve grain yield in rice and perhaps in other cereal crops as well
GW5|qSW5	None	None	grain yield	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	Our results suggest that GW5 is a novel positive regulator of BR signalling and a viable target for genetic manipulation to improve grain yield in rice and perhaps in other cereal crops as well
GW5|qSW5	None	None	yield	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	Our results suggest that GW5 is a novel positive regulator of BR signalling and a viable target for genetic manipulation to improve grain yield in rice and perhaps in other cereal crops as well
GW5|qSW5	None	None	brassinosteroid	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.
GW5|qSW5	None	None	brassinosteroid	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 protein is localized to the plasma membrane and can physically interact with and repress the kinase activity of rice GSK2 (glycogen synthase kinase 2), a homologue of Arabidopsis BIN2 (BRASSINOSTEROID INSENSITIVE2) kinase, resulting in accumulation of unphosphorylated OsBZR1 (Oryza sativa BRASSINAZOLE RESISTANT1) and DLT (DWARF AND LOW-TILLERING) proteins in the nucleus to mediate brassinosteroid (BR)-responsive gene expression and growth responses (including grain width and weight)
GW5|qSW5	None	None	BR	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	Our results suggest that GW5 is a novel positive regulator of BR signalling and a viable target for genetic manipulation to improve grain yield in rice and perhaps in other cereal crops as well
GW5|qSW5	None	None	Brassinosteroid	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.
GW5|qSW5	None	None	Brassinosteroid	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 protein is localized to the plasma membrane and can physically interact with and repress the kinase activity of rice GSK2 (glycogen synthase kinase 2), a homologue of Arabidopsis BIN2 (BRASSINOSTEROID INSENSITIVE2) kinase, resulting in accumulation of unphosphorylated OsBZR1 (Oryza sativa BRASSINAZOLE RESISTANT1) and DLT (DWARF AND LOW-TILLERING) proteins in the nucleus to mediate brassinosteroid (BR)-responsive gene expression and growth responses (including grain width and weight)
GW5|qSW5	None	None	nucleus	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 protein is localized to the plasma membrane and can physically interact with and repress the kinase activity of rice GSK2 (glycogen synthase kinase 2), a homologue of Arabidopsis BIN2 (BRASSINOSTEROID INSENSITIVE2) kinase, resulting in accumulation of unphosphorylated OsBZR1 (Oryza sativa BRASSINAZOLE RESISTANT1) and DLT (DWARF AND LOW-TILLERING) proteins in the nucleus to mediate brassinosteroid (BR)-responsive gene expression and growth responses (including grain width and weight)
GW5|qSW5	None	None	plasma membrane	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 protein is localized to the plasma membrane and can physically interact with and repress the kinase activity of rice GSK2 (glycogen synthase kinase 2), a homologue of Arabidopsis BIN2 (BRASSINOSTEROID INSENSITIVE2) kinase, resulting in accumulation of unphosphorylated OsBZR1 (Oryza sativa BRASSINAZOLE RESISTANT1) and DLT (DWARF AND LOW-TILLERING) proteins in the nucleus to mediate brassinosteroid (BR)-responsive gene expression and growth responses (including grain width and weight)
GW5|qSW5	None	None	Kinase	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 protein is localized to the plasma membrane and can physically interact with and repress the kinase activity of rice GSK2 (glycogen synthase kinase 2), a homologue of Arabidopsis BIN2 (BRASSINOSTEROID INSENSITIVE2) kinase, resulting in accumulation of unphosphorylated OsBZR1 (Oryza sativa BRASSINAZOLE RESISTANT1) and DLT (DWARF AND LOW-TILLERING) proteins in the nucleus to mediate brassinosteroid (BR)-responsive gene expression and growth responses (including grain width and weight)
GW5|qSW5	None	None	grain width	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.
GW5|qSW5	None	None	grain width	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	We provide evidence that the 1,212-bp deletion affects grain width most likely through influencing the expression levels of GW5
GW5|qSW5	None	None	grain width	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	GW5 protein is localized to the plasma membrane and can physically interact with and repress the kinase activity of rice GSK2 (glycogen synthase kinase 2), a homologue of Arabidopsis BIN2 (BRASSINOSTEROID INSENSITIVE2) kinase, resulting in accumulation of unphosphorylated OsBZR1 (Oryza sativa BRASSINAZOLE RESISTANT1) and DLT (DWARF AND LOW-TILLERING) proteins in the nucleus to mediate brassinosteroid (BR)-responsive gene expression and growth responses (including grain width and weight)
GW5L	Os01g0190500	LOC_Os01g09470	resistance	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	We also show that GW5L could confer salt stress resistance through an association with calmodulin protein OsCaM1-1
GW5L	Os01g0190500	LOC_Os01g09470	resistance	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	These findings identify GW5L as a negative regulator of both grain size and salt stress tolerance, and provide a potential target for breeders to improve grain yield and salt stress resistance in rice
GW5L	Os01g0190500	LOC_Os01g09470	grain	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	These findings identify GW5L as a negative regulator of both grain size and salt stress tolerance, and provide a potential target for breeders to improve grain yield and salt stress resistance in rice
GW5L	Os01g0190500	LOC_Os01g09470	salt	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	We also show that GW5L could confer salt stress resistance through an association with calmodulin protein OsCaM1-1
GW5L	Os01g0190500	LOC_Os01g09470	salt	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	These findings identify GW5L as a negative regulator of both grain size and salt stress tolerance, and provide a potential target for breeders to improve grain yield and salt stress resistance in rice
GW5L	Os01g0190500	LOC_Os01g09470	grain yield	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	These findings identify GW5L as a negative regulator of both grain size and salt stress tolerance, and provide a potential target for breeders to improve grain yield and salt stress resistance in rice
GW5L	Os01g0190500	LOC_Os01g09470	yield	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	These findings identify GW5L as a negative regulator of both grain size and salt stress tolerance, and provide a potential target for breeders to improve grain yield and salt stress resistance in rice
GW5L	Os01g0190500	LOC_Os01g09470	grain size	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	These findings identify GW5L as a negative regulator of both grain size and salt stress tolerance, and provide a potential target for breeders to improve grain yield and salt stress resistance in rice
GW5L	Os01g0190500	LOC_Os01g09470	salt stress	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	We also show that GW5L could confer salt stress resistance through an association with calmodulin protein OsCaM1-1
GW5L	Os01g0190500	LOC_Os01g09470	salt stress	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	These findings identify GW5L as a negative regulator of both grain size and salt stress tolerance, and provide a potential target for breeders to improve grain yield and salt stress resistance in rice
GW5L	Os01g0190500	LOC_Os01g09470	stress	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	We also show that GW5L could confer salt stress resistance through an association with calmodulin protein OsCaM1-1
GW5L	Os01g0190500	LOC_Os01g09470	stress	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	These findings identify GW5L as a negative regulator of both grain size and salt stress tolerance, and provide a potential target for breeders to improve grain yield and salt stress resistance in rice
GW5L	Os01g0190500	LOC_Os01g09470	plasma membrane	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	GW5L is evenly expressed in various tissues, and its protein product is localized to the plasma membrane
GW5L	Os01g0190500	LOC_Os01g09470	stress tolerance	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	These findings identify GW5L as a negative regulator of both grain size and salt stress tolerance, and provide a potential target for breeders to improve grain yield and salt stress resistance in rice
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.	OsSPL16 (GW8), an SBP-domain transcription factor that regulates grain width, bound directly to the GW7 promoter and repressed its expression
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	transcription factor	The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.	OsSPL16 (GW8), an SBP-domain transcription factor that regulates grain width, bound directly to the GW7 promoter and repressed its expression
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	cell division	The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.	Upregulation of GW7 expression was correlated with the production of more slender grains, as a result of increased cell division in the longitudinal direction and decreased cell division in the transverse direction
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain width	The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.	OsSPL16 (GW8), an SBP-domain transcription factor that regulates grain width, bound directly to the GW7 promoter and repressed its expression
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	Copy number variation at the GL7 locus contributes to grain size diversity in rice.
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	1-kb segment at the GL7 locus leads to upregulation of GL7 and downregulation of its nearby negative regulator, resulting in an increase in grain length and improvement of grain appearance quality
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	Sequence analysis indicates that allelic variants of GL7 and its negative regulator are associated with grain size diversity and that the CNV at the GL7 locus was selected for and used in breeding
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain size	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	Copy number variation at the GL7 locus contributes to grain size diversity in rice.
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain size	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	Sequence analysis indicates that allelic variants of GL7 and its negative regulator are associated with grain size diversity and that the CNV at the GL7 locus was selected for and used in breeding
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain length	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	1-kb segment at the GL7 locus leads to upregulation of GL7 and downregulation of its nearby negative regulator, resulting in an increase in grain length and improvement of grain appearance quality
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	cell elongation	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	GL7 encodes a protein homologous to Arabidopsis thaliana LONGIFOLIA proteins, which regulate longitudinal cell elongation
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	breeding	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	Sequence analysis indicates that allelic variants of GL7 and its negative regulator are associated with grain size diversity and that the CNV at the GL7 locus was selected for and used in breeding
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	breeding	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	Our work suggests that pyramiding beneficial alleles of GL7 and other yield- and quality-related genes may improve the breeding of elite rice varieties
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	quality	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	1-kb segment at the GL7 locus leads to upregulation of GL7 and downregulation of its nearby negative regulator, resulting in an increase in grain length and improvement of grain appearance quality
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	Natural Variations in SLG7 Regulate Grain Shape in Rice.	Natural Variations in SLG7 Regulate Grain Shape in Rice.
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	Natural Variations in SLG7 Regulate Grain Shape in Rice.	The SLG7 allele from Azucena produces longer and thinner grains, while has no influence on grain weight and yield production
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	Natural Variations in SLG7 Regulate Grain Shape in Rice.	Our findings show that the functions of SLG7 family members are conserved across monocots and dicots, and the SLG7 allele could be applied in breeding to modify rice grain appearance
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	yield	Natural Variations in SLG7 Regulate Grain Shape in Rice.	The SLG7 allele from Azucena produces longer and thinner grains, while has no influence on grain weight and yield production
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	cell division	Natural Variations in SLG7 Regulate Grain Shape in Rice.	Morphological and cellular analyses suggested that SLG7 produces slender grains by longitudinally increasing cell length, while transversely decreasing cell width, which is independent from cell division
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	breeding	Natural Variations in SLG7 Regulate Grain Shape in Rice.	Our findings show that the functions of SLG7 family members are conserved across monocots and dicots, and the SLG7 allele could be applied in breeding to modify rice grain appearance
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	plasma membrane	Natural Variations in SLG7 Regulate Grain Shape in Rice.	SLG7 is constitutively expressed in various tissues in rice, and the SLG7 protein is located in plasma membrane
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain weight	Natural Variations in SLG7 Regulate Grain Shape in Rice.	The SLG7 allele from Azucena produces longer and thinner grains, while has no influence on grain weight and yield production
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	development	Development of a specific molecular marker for SLG7 on high-quality rice breeding.	Development of a specific molecular marker for SLG7 on high-quality rice breeding.
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	Development of a specific molecular marker for SLG7 on high-quality rice breeding.	 The SLG7 gene is a novel gene responsible for slender grain shape in rice
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	Development of a specific molecular marker for SLG7 on high-quality rice breeding.	 The accessions, which possessed the SLG7 allele with 11-bp deletion in the promoter region, had longer grain length and better quality
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain	Development of a specific molecular marker for SLG7 on high-quality rice breeding.	 Here, we recommend the use of the simple, inexpensive assay for routine genotyping of slender grain and lower chalkiness in the breeding population for discrimination of SLG7 genotype in rice germplasm
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain length	Development of a specific molecular marker for SLG7 on high-quality rice breeding.	 The accessions, which possessed the SLG7 allele with 11-bp deletion in the promoter region, had longer grain length and better quality
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	quality	Development of a specific molecular marker for SLG7 on high-quality rice breeding.	 The accessions, which possessed the SLG7 allele with 11-bp deletion in the promoter region, had longer grain length and better quality
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	breeding	Development of a specific molecular marker for SLG7 on high-quality rice breeding.	 Here, we recommend the use of the simple, inexpensive assay for routine genotyping of slender grain and lower chalkiness in the breeding population for discrimination of SLG7 genotype in rice germplasm
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	chalkiness	Development of a specific molecular marker for SLG7 on high-quality rice breeding.	 Here, we recommend the use of the simple, inexpensive assay for routine genotyping of slender grain and lower chalkiness in the breeding population for discrimination of SLG7 genotype in rice germplasm
GW7|GL7|SLG7|Chalk7	Os07g0603300	LOC_Os07g41200	grain shape	Development of a specific molecular marker for SLG7 on high-quality rice breeding.	 The SLG7 gene is a novel gene responsible for slender grain shape in rice
HAN1	Os11g0483000	LOC_Os11g29290	domestication	Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.	Natural variants in HAN1 diverged between indica and japonica rice during domestication
HAN1	Os11g0483000	LOC_Os11g29290	tolerance	Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.	Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.
HAN1	Os11g0483000	LOC_Os11g29290	tolerance	Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.	A specific allele from temperate japonica rice, which gained a putative MYB cis-element in the promoter of HAN1 during the divergence of the two japonica ecotypes, enhances the chilling tolerance of temperate japonica rice and allows it to adapt to a temperate climate
HAN1	Os11g0483000	LOC_Os11g29290	chilling	Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.	Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.
HAN1	Os11g0483000	LOC_Os11g29290	chilling	Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.	HAN1 encodes an oxidase that catalyzes the conversion of biologically active jasmonoyl-L-isoleucine (JA-Ile) to the inactive form 12-hydroxy-JA-Ile (12OH-JA-Ile) and fine-tunes the JA-mediated chilling response
HAN1	Os11g0483000	LOC_Os11g29290	chilling	Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.	A specific allele from temperate japonica rice, which gained a putative MYB cis-element in the promoter of HAN1 during the divergence of the two japonica ecotypes, enhances the chilling tolerance of temperate japonica rice and allows it to adapt to a temperate climate
HAZ1|HOX1a	Os06g0229300	LOC_Os06g12400	flower	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	In addition, HOX1a suppresses the transcription of early flowering1 (EL1), a negative regulator of GA signaling, and further electrophoretic mobility shift assay and chromatin immunoprecipitation analysis revealed that HOX1a directly bound to the promoter region of EL1 to suppress its expression and stimulate GA signaling
HAZ1|HOX1a	Os06g0229300	LOC_Os06g12400	gibberellin	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	We here show that overexpression of rice homeobox gene HOX1a resulted in enhanced gibberellin (GA) response, indicating a positive effect of HOX1a in GA signaling
HAZ1|HOX1a	Os06g0229300	LOC_Os06g12400	gibberellin	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1
HAZ1|HOX1a	Os06g0229300	LOC_Os06g12400	transcription factor	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	HOX1a is induced by GA and encodes a homeobox transcription factor with transcription repression activity
HAZ1|HOX1a	Os06g0229300	LOC_Os06g12400	transcription factor	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1
HAZ1|HOX1a	Os06g0229300	LOC_Os06g12400	ga	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	We here show that overexpression of rice homeobox gene HOX1a resulted in enhanced gibberellin (GA) response, indicating a positive effect of HOX1a in GA signaling
HAZ1|HOX1a	Os06g0229300	LOC_Os06g12400	ga	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	HOX1a is induced by GA and encodes a homeobox transcription factor with transcription repression activity
HAZ1|HOX1a	Os06g0229300	LOC_Os06g12400	ga	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	In addition, HOX1a suppresses the transcription of early flowering1 (EL1), a negative regulator of GA signaling, and further electrophoretic mobility shift assay and chromatin immunoprecipitation analysis revealed that HOX1a directly bound to the promoter region of EL1 to suppress its expression and stimulate GA signaling
HAZ1|HOX1a	Os06g0229300	LOC_Os06g12400	ga	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1	These results demonstrate that HOX1a functions as a positive regulator of GA signaling by suppressing EL1, providing informative hints on the study of GA signaling
Hb5	Os05g0517600	LOC_Os05g44140	stress	Expression and in silico structural analysis of a rice (Oryza sativa) hemoglobin 5	Transcripts of hb5 were found to be ubiquitous in rice organs, and hormone- and stress-response promoters exist upstream of the rice hb5 gene.
Hb5	Os05g0517600	LOC_Os05g44140	stress response	Expression and in silico structural analysis of a rice (Oryza sativa) hemoglobin 5	Transcripts of hb5 were found to be ubiquitous in rice organs, and hormone- and stress-response promoters exist upstream of the rice hb5 gene.
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	adventitious root	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	The physiological roles of OsCKI1 were studied through antisense transgenic approaches, and homozygous transgenic plants showed abnormal root development, including fewer lateral and adventitious roots, and shortened primary roots as a result of reduced cell elongation
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	adventitious root	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	Interestingly, in transgenic and CKI-7-treated plants, exogenously supplied IAA could restore normal root development, and measurement of free IAA content in CKI-deficient primary and adventitious roots revealed altered auxin content, indicating that OsCKI1 is involved in auxin metabolism or that it may affect auxin levels
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	brassinosteroid	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	A rice cDNA fragment encoding a putative casein kinase I (CKI) was identified via cDNA macroarray under brassinosteroid (BR) treatment, and a 1939-bp full-length cDNA, OsCKI1, was isolated and found to encode a putative 463-aa protein
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	root development	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	The physiological roles of OsCKI1 were studied through antisense transgenic approaches, and homozygous transgenic plants showed abnormal root development, including fewer lateral and adventitious roots, and shortened primary roots as a result of reduced cell elongation
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	root development	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	Interestingly, in transgenic and CKI-7-treated plants, exogenously supplied IAA could restore normal root development, and measurement of free IAA content in CKI-deficient primary and adventitious roots revealed altered auxin content, indicating that OsCKI1 is involved in auxin metabolism or that it may affect auxin levels
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	root development	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	root	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	The physiological roles of OsCKI1 were studied through antisense transgenic approaches, and homozygous transgenic plants showed abnormal root development, including fewer lateral and adventitious roots, and shortened primary roots as a result of reduced cell elongation
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	root	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	Interestingly, in transgenic and CKI-7-treated plants, exogenously supplied IAA could restore normal root development, and measurement of free IAA content in CKI-deficient primary and adventitious roots revealed altered auxin content, indicating that OsCKI1 is involved in auxin metabolism or that it may affect auxin levels
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	root	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	iaa	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	Interestingly, in transgenic and CKI-7-treated plants, exogenously supplied IAA could restore normal root development, and measurement of free IAA content in CKI-deficient primary and adventitious roots revealed altered auxin content, indicating that OsCKI1 is involved in auxin metabolism or that it may affect auxin levels
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	ABA	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	Transgenic plants were less sensitive than control plants to ABA or BR treatment during germination, suggesting that OsCKI1 may be involved in various hormone-signaling pathways
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	primary root	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	The physiological roles of OsCKI1 were studied through antisense transgenic approaches, and homozygous transgenic plants showed abnormal root development, including fewer lateral and adventitious roots, and shortened primary roots as a result of reduced cell elongation
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	auxin	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	Interestingly, in transgenic and CKI-7-treated plants, exogenously supplied IAA could restore normal root development, and measurement of free IAA content in CKI-deficient primary and adventitious roots revealed altered auxin content, indicating that OsCKI1 is involved in auxin metabolism or that it may affect auxin levels
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	BR	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	RT-PCR and Northern blot analysis indicated that OsCKI1 was constitutively expressed in various rice tissues and upregulated by treatments with BR and abscisic acid (ABA)
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	BR	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	Transgenic plants were less sensitive than control plants to ABA or BR treatment during germination, suggesting that OsCKI1 may be involved in various hormone-signaling pathways
hbd2|OsCKI1	Os02g0622100	LOC_Os02g40860	cell elongation	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity	The physiological roles of OsCKI1 were studied through antisense transgenic approaches, and homozygous transgenic plants showed abnormal root development, including fewer lateral and adventitious roots, and shortened primary roots as a result of reduced cell elongation
HBP1	Os04g0489600	LOC_Os04g41229	transcription factor	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 In this study, two basic helix-loop-helix (bHLH) transcription factors, Hd1 Binding Protein 1 (HBP1) and Partner of HBP1 (POH1) were identified as transcriptional regulators of Hd1
HBP1	Os04g0489600	LOC_Os04g41229	transcription factor	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 We generated knockout mutants of HBP1 and ectopically expressed transgenic lines of the two bHLH transcription factors and used these lines to investigate the roles of these two factors in regulating flowering time
HBP1	Os04g0489600	LOC_Os04g41229	heading date	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 CRISPR/Cas9-generated knockout mutations of HBP1, but not POH1 mutations, promoted earlier flowering time; conversely, HBP1 and POH1 overexpression delayed flowering time in rice under long-day and short-day conditions by activating the expression of Hd1 and suppressing the expression of Early heading date 1 (Ehd1), Heading date 3a (Hd3a), and Rice Flowering locus T 1 (RFT1), thus controlling flowering time in rice
HBP1	Os04g0489600	LOC_Os04g41229	flowering time	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 We generated knockout mutants of HBP1 and ectopically expressed transgenic lines of the two bHLH transcription factors and used these lines to investigate the roles of these two factors in regulating flowering time
HBP1	Os04g0489600	LOC_Os04g41229	flowering time	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 CRISPR/Cas9-generated knockout mutations of HBP1, but not POH1 mutations, promoted earlier flowering time; conversely, HBP1 and POH1 overexpression delayed flowering time in rice under long-day and short-day conditions by activating the expression of Hd1 and suppressing the expression of Early heading date 1 (Ehd1), Heading date 3a (Hd3a), and Rice Flowering locus T 1 (RFT1), thus controlling flowering time in rice
HBP1	Os04g0489600	LOC_Os04g41229	transcriptional regulator	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 In this study, two basic helix-loop-helix (bHLH) transcription factors, Hd1 Binding Protein 1 (HBP1) and Partner of HBP1 (POH1) were identified as transcriptional regulators of Hd1
HBP1	Os04g0489600	LOC_Os04g41229	flowering	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 We generated knockout mutants of HBP1 and ectopically expressed transgenic lines of the two bHLH transcription factors and used these lines to investigate the roles of these two factors in regulating flowering time
HBP1	Os04g0489600	LOC_Os04g41229	flowering	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 CRISPR/Cas9-generated knockout mutations of HBP1, but not POH1 mutations, promoted earlier flowering time; conversely, HBP1 and POH1 overexpression delayed flowering time in rice under long-day and short-day conditions by activating the expression of Hd1 and suppressing the expression of Early heading date 1 (Ehd1), Heading date 3a (Hd3a), and Rice Flowering locus T 1 (RFT1), thus controlling flowering time in rice
Hd1	Os06g0275000	LOC_Os06g16370	heading date	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Spin1 overexpression causes late flowering independently of daylength; expression analyses of flowering marker genes in these lines suggested that SPIN1 represses flowering by downregulating the flowering promoter gene Heading date3a (Hd3a) via Hd1-dependent mechanisms in short days and by targeting Hd1-independent factors in long days
Hd1	Os06g0275000	LOC_Os06g16370	heading date	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	The CONSTANS (CO) and Heading date 1 (Hd1) genes are known to be central integrators of the photoperiod pathway in Arabidopsis and rice, respectively
Hd1	Os06g0275000	LOC_Os06g16370	heading date	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	The expression of Hd3a and FTL decreased in these transgenic plants, whereas the expression of Hd1, Early heading date 1 (Ehd1), OsMADS51, and OsMADS50 did not significantly change
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	RT-PCR analyses of the OsMADS50 KO and ubiquitin (ubi):OsMADS50 plants showed that OsMADS50 is an upstream regulator of OsMADS1, OsMADS14, OsMADS15, OsMADS18, and Hd (Heading date)3a, but works either parallel with or downstream of Hd1 and O
Hd1	Os06g0275000	LOC_Os06g16370	leaf	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Hd1	Os06g0275000	LOC_Os06g16370	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Spin1 overexpression causes late flowering independently of daylength; expression analyses of flowering marker genes in these lines suggested that SPIN1 represses flowering by downregulating the flowering promoter gene Heading date3a (Hd3a) via Hd1-dependent mechanisms in short days and by targeting Hd1-independent factors in long days
Hd1	Os06g0275000	LOC_Os06g16370	yield	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Hd1	Os06g0275000	LOC_Os06g16370	height	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Meanwhile, the transcription of DTH8 has been proved to be independent of Ghd7 and Hd1, and the natural mutation of this gene caused weak photoperiod sensitivity and shorter plant height
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions	In addition, QTLs near Hd2, Hd16, and Ghd7, which are involved in inhibition of heading under long-day conditions, function in the same pathway that controls heading date
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Hd1	Os06g0275000	LOC_Os06g16370	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Flowering genes downstream of OsPRR1 such as OsGI and Hd1 were down regulated in the A654 mutant
Hd1	Os06g0275000	LOC_Os06g16370	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Together, these results suggest that overexpression of OsLF might repress expression of OsGI and Hd1 by competing with OsPRR1 in interacting with OsPIL13 and OsPIL15 and thus induce late flowering
Hd1	Os06g0275000	LOC_Os06g16370	flower	Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice	A single NB strongly suppressed the mRNA of Hd3a, a homolog of Arabidopsis thaliana FLOWERING LOCUS T (FT), whereas the mRNAs of OsGI and Hd1 were not affected
Hd1	Os06g0275000	LOC_Os06g16370	breeding	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	Since the photoperiod-insensitive allele of Hd1 confers a long vegetative phase, it is a good candidate for breeding rice varieties with high yielding potential for low latitudes
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	The RNA levels of Heading date 3a (Hd3a), encoding a floral activator, are highly correlated with flowering time, and there is a high degree of polymorphism in the Heading date 1 (Hd1) protein, which is a major regulator of Hd3a expression
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	Functional and nonfunctional alleles of Hd1 are associated with early and late flowering, respectively, suggesting that Hd1 is a major determinant of variation in flowering time of cultivated rice
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	We also found that the type of Hd3a promoter and the level of Ehd1 expression contribute to the diversity in flowering time and Hd3a expression level
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	Map-based cloning revealed that the rice flowering-time quantitative trait locus (QTL) Heading date 16 (Hd16) encodes a casein kinase-I protein
Hd1	Os06g0275000	LOC_Os06g16370	flower	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	Heading date 1 (Hd1), a regulator of the florigen gene Hd3a, is one of the main factors used to generate diversity in flowering
Hd1	Os06g0275000	LOC_Os06g16370	flower	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	Loss-of-function alleles of Hd1 are common in cultivated rice and cause the diversity of flowering time
Hd1	Os06g0275000	LOC_Os06g16370	flower	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	In contrast with Hd3a, which has been highly conserved, Hd1 may have undergone human selection to diversify the flowering times of rice during domestication or the early stage of the cultivation period
Hd1	Os06g0275000	LOC_Os06g16370	flower	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice
Hd1	Os06g0275000	LOC_Os06g16370	shoot apical meristem	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	The RNA levels of Heading date 3a (Hd3a), encoding a floral activator, are highly correlated with flowering time, and there is a high degree of polymorphism in the Heading date 1 (Hd1) protein, which is a major regulator of Hd3a expression
Hd1	Os06g0275000	LOC_Os06g16370	floral	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	The RNA levels of Heading date 3a (Hd3a), encoding a floral activator, are highly correlated with flowering time, and there is a high degree of polymorphism in the Heading date 1 (Hd1) protein, which is a major regulator of Hd3a expression
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Epistasis among the three major flowering time genes in rice: coordinate changes of photoperiod sensitivity, basic vegetative growth and optimum photoperiod	The comparison of the nucleotide sequences suggested that Ef1 is the same as Early heading date 1 (Ehd1)
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	Heading date 1 (Hd1), a regulator of the florigen gene Hd3a, is one of the main factors used to generate diversity in flowering
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice
Hd1	Os06g0275000	LOC_Os06g16370	panicle	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Hd1	Os06g0275000	LOC_Os06g16370	panicle	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Hd1	Os06g0275000	LOC_Os06g16370	panicle	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Hd1	Os06g0275000	LOC_Os06g16370	heading date	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	The quantitative real-time PCR assay revealed that DTH8 could down-regulate the transcriptions of Ehd1 (for Early heading date1) and Hd3a (for Heading date3a; a rice ortholog of FLOWERING LOCUS T) under long-day conditions
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	The Early heading date 1 (Ehd1) which promotes the RFT1, was up-regulated by DTH3 in both LD and SD conditions
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1
Hd1	Os06g0275000	LOC_Os06g16370	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	Map-based cloning revealed that the rice flowering-time quantitative trait locus (QTL) Heading date 16 (Hd16) encodes a casein kinase-I protein
Hd1	Os06g0275000	LOC_Os06g16370	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	By using near-isogenic lines with functional or deficient alleles of several rice flowering-time genes, we observed significant digenetic interactions between Hd16 and four other flowering-time genes (Ghd7, Hd1, DTH8 and Hd2)
Hd1	Os06g0275000	LOC_Os06g16370	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	These results demonstrate that Hd16 acts as an inhibitor in the rice flowering pathway by enhancing the photoperiod response as a result of the phosphorylation of Ghd7
Hd1	Os06g0275000	LOC_Os06g16370	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Characterization and detection of epistatic interactions of 3 QTLs, Hd1 , Hd2 , and Hd3, controlling heading date in rice using nearly isogenic lines	Characterization and detection of epistatic interactions of 3 QTLs, Hd1 , Hd2 , and Hd3, controlling heading date in rice using nearly isogenic lines
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We grew four rice lines having different flowering time genotypes (hd1 ehd1, hd1 Ehd1, Hd1 ehd1 and Hd1 Ehd1) under distinct photoperiod conditions
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Hd1	Os06g0275000	LOC_Os06g16370	floral	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	In addition, expression of the Hd3a and Rice Flowering-locus T 1 (RFT1) florigen genes was up-regulated in leaves of the Hd1 Ehd1 line at the time of the floral transition
Hd1	Os06g0275000	LOC_Os06g16370	spikelet number	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	Loss-of-function alleles of Hd1 are common in cultivated rice and cause the diversity of flowering time
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	In contrast with Hd3a, which has been highly conserved, Hd1 may have undergone human selection to diversify the flowering times of rice during domestication or the early stage of the cultivation period
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice
Hd1	Os06g0275000	LOC_Os06g16370	yield	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	They were used to analyze the effects of Hd1 on heading date, plant height and yield traits
Hd1	Os06g0275000	LOC_Os06g16370	yield	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	Since the photoperiod-insensitive allele of Hd1 confers a long vegetative phase, it is a good candidate for breeding rice varieties with high yielding potential for low latitudes
Hd1	Os06g0275000	LOC_Os06g16370	yield	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Footprints of natural and artificial selection for photoperiod pathway genes in Oryza	We examined the footprints of natural and artificial selections for four major genes of the photoperiod pathway, namely PHYTOCHROME B (PhyB), HEADING DATE 1 (Hd1), HEADING DATE 3a (Hd3a), and EARLY HEADING DATE 1 (Ehd1), by investigation of the patterns of nucleotide polymorphisms in cultivated and wild rice
Hd1	Os06g0275000	LOC_Os06g16370	shoot	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Hd1	Os06g0275000	LOC_Os06g16370	flower	Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP)	In rice, OsGI, Hd1 and Hd3a were identified as orthologs of GI, CO and FT, respectively, and are also important regulators of flowering
Hd1	Os06g0275000	LOC_Os06g16370	meristem	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS	Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS
Hd1	Os06g0275000	LOC_Os06g16370	flower	Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS	Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS
Hd1	Os06g0275000	LOC_Os06g16370	domestication	Footprints of natural and artificial selection for photoperiod pathway genes in Oryza	Many other features of the photoperiod genes revealed domestication signatures, which included high linkage disequilibrium (LD) within genes, the occurrence of frequent and recurrent non-functional Hd1 mutants in cultivated rice, crossovers between subtropical and tropical alleles of Hd1, and significant LD between Hd1 and Hd3a in japonica and indica
Hd1	Os06g0275000	LOC_Os06g16370	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Under SD conditions, flowering is promoted through the activation of FT-like genes (rice florigens) by Heading date 1 (Hd1, a rice CONSTANS homolog) and Early heading date 1 (Ehd1, with no ortholog in the Arabidopsis genome)
Hd1	Os06g0275000	LOC_Os06g16370	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	On the other hand, under long-day (LD) conditions, flowering is delayed by the repressive function of Hd1 on FT-like genes and by downregulation of Ehd1 by the flowering repressor Ghd7 - a unique pathway in rice
Hd1	Os06g0275000	LOC_Os06g16370	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	We report here that an early heading date 3 (ehd3) mutant flowered later than wild-type plants, particularly under LD conditions, regardless of the Hd1-deficient background
Hd1	Os06g0275000	LOC_Os06g16370	flower	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Furthermore, Ehd3 ghd7 plants flowered earlier and show higher Ehd1 transcript levels than ehd3 ghd7 plants, suggesting a Ghd7-independent role of Ehd3 in the upregulation of Ehd1
Hd1	Os06g0275000	LOC_Os06g16370	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We grew four rice lines having different flowering time genotypes (hd1 ehd1, hd1 Ehd1, Hd1 ehd1 and Hd1 Ehd1) under distinct photoperiod conditions
Hd1	Os06g0275000	LOC_Os06g16370	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Hd1	Os06g0275000	LOC_Os06g16370	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	In addition, expression of the Hd3a and Rice Flowering-locus T 1 (RFT1) florigen genes was up-regulated in leaves of the Hd1 Ehd1 line at the time of the floral transition
Hd1	Os06g0275000	LOC_Os06g16370	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	We further revealed that Hd1 and/or Ehd1 caused up-regulation of Terminal Flower 1-like genes and precocious expression of panicle formation-related genes at shoot apical meristems during panicle development
Hd1	Os06g0275000	LOC_Os06g16370	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	Therefore, two key flowering time genes, Hd1 and Ehd1, can control panicle development in rice; this may affect crop yields in the field through florigen expression in leaf
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice	In rice, a short-day plant (SDP), the CO ortholog Heading date 1 (Hd1) regulates FT ortholog Hd3a, but regulation of Hd3a by Hd1 differs from that in Arabidopsis
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice
Hd1	Os06g0275000	LOC_Os06g16370	domestication	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	The non-functional Hd1 alleles found in cultivated rice may be selected during domestication, because they were not found or very rare in wild ancestral rice
Hd1	Os06g0275000	LOC_Os06g16370	domestication	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	In contrast with Hd3a, which has been highly conserved, Hd1 may have undergone human selection to diversify the flowering times of rice during domestication or the early stage of the cultivation period
Hd1	Os06g0275000	LOC_Os06g16370	domestication	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	We discovered an early heading date2 (ehd2) mutant that shows extremely late flowering under both short- and long-day conditions in line with a background deficient in Heading date1 (Hd1), a rice CONSTANS ortholog that belongs to the conserved pathway
Hd1	Os06g0275000	LOC_Os06g16370	flower	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	The RNA levels of Heading date 3a (Hd3a), encoding a floral activator, are highly correlated with flowering time, and there is a high degree of polymorphism in the Heading date 1 (Hd1) protein, which is a major regulator of Hd3a expression
Hd1	Os06g0275000	LOC_Os06g16370	flower	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	Functional and nonfunctional alleles of Hd1 are associated with early and late flowering, respectively, suggesting that Hd1 is a major determinant of variation in flowering time of cultivated rice
Hd1	Os06g0275000	LOC_Os06g16370	flower	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	We also found that the type of Hd3a promoter and the level of Ehd1 expression contribute to the diversity in flowering time and Hd3a expression level
Hd1	Os06g0275000	LOC_Os06g16370	flower	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Epistasis among the three major flowering time genes in rice: coordinate changes of photoperiod sensitivity, basic vegetative growth and optimum photoperiod	The present study was carried out in rice to examine to what extent these three developmental components are modified by the three flowering time genes, Se1 (= Hd1), Ef1 and e1 (= m-Ef1), which are known to contribute to flowering time in temperate and tropical regions of rice cultivation
Hd1	Os06g0275000	LOC_Os06g16370	temperature	The effect of the crosstalk between photoperiod and temperature on the heading-date in rice	The expression patterns of Hd1 and Hd3a were also analyzed in different photoperiod and temperature conditions, revealing that Hd1 mRNA levels displayed similar expression patterns for different photoperiod and temperature treatments, with high expression levels at night and reduced levels in the daytime
Hd1	Os06g0275000	LOC_Os06g16370	temperature	The effect of the crosstalk between photoperiod and temperature on the heading-date in rice	In addition, Hd1 displayed a slightly higher expression level under long-day and low temperature conditions
Hd1	Os06g0275000	LOC_Os06g16370	flower	Epistasis among the three major flowering time genes in rice: coordinate changes of photoperiod sensitivity, basic vegetative growth and optimum photoperiod	The present study was carried out in rice to examine to what extent these three developmental components are modified by the three flowering time genes, Se1 (= Hd1), Ef1 and e1 (= m-Ef1), which are known to contribute to flowering time in temperate and tropical regions of rice cultivation
Hd1	Os06g0275000	LOC_Os06g16370	flower	Epistasis among the three major flowering time genes in rice: coordinate changes of photoperiod sensitivity, basic vegetative growth and optimum photoperiod	Since the two genes Se1 (= Hd1) and Ef1 (= Ehd1) are known to up-regulate the rice homolog of Arabidopsis FT, it is suggested that the detected epistasis may respond to diverse environments by modulating the CO/FT system conserved in flowering plants
Hd1	Os06g0275000	LOC_Os06g16370	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	We propose that both positive (OsMADS50 and Ehd1) and negative (Hd1, phyB and Ghd7) regulators of RFT1 form a gene network that regulates LD flowering in rice
Hd1	Os06g0275000	LOC_Os06g16370	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	Among these regulators, Ehd1, a rice-specific floral inducer, integrates multiple pathways to regulate RFT1, leading to flowering under appropriate photoperiod conditions
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	3-kb region covering heading date gene Hd1 were developed from the indica rice cross Zhenshan97 (ZS97)/Milyang 46 (MY46)
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	They were used to analyze the effects of Hd1 on heading date, plant height and yield traits
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	Under SD conditions, flowering is promoted through the activation of FT-like genes (rice florigens) by Heading date 1 (Hd1, a rice CONSTANS homolog) and Early heading date 1 (Ehd1, with no ortholog in the Arabidopsis genome)
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering	We report here that an early heading date 3 (ehd3) mutant flowered later than wild-type plants, particularly under LD conditions, regardless of the Hd1-deficient background
Hd1	Os06g0275000	LOC_Os06g16370	vegetative	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	Since the photoperiod-insensitive allele of Hd1 confers a long vegetative phase, it is a good candidate for breeding rice varieties with high yielding potential for low latitudes
Hd1	Os06g0275000	LOC_Os06g16370	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	The quantitative real-time PCR assay revealed that DTH8 could down-regulate the transcriptions of Ehd1 (for Early heading date1) and Hd3a (for Heading date3a; a rice ortholog of FLOWERING LOCUS T) under long-day conditions
Hd1	Os06g0275000	LOC_Os06g16370	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Ehd1 and Hd3a can also be down-regulated by the photoperiodic flowering genes Ghd7 and Hd1 (a rice ortholog of CONSTANS)
Hd1	Os06g0275000	LOC_Os06g16370	flowering time	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response
Hd1	Os06g0275000	LOC_Os06g16370	height	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	They were used to analyze the effects of Hd1 on heading date, plant height and yield traits
Hd1	Os06g0275000	LOC_Os06g16370	height	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice
Hd1	Os06g0275000	LOC_Os06g16370	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	We discovered an early heading date2 (ehd2) mutant that shows extremely late flowering under both short- and long-day conditions in line with a background deficient in Heading date1 (Hd1), a rice CONSTANS ortholog that belongs to the conserved pathway
Hd1	Os06g0275000	LOC_Os06g16370	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	To assign the position of Ehd2 within the flowering pathway of rice, we compared transcript levels of previously isolated flowering-time genes, such as Ehd1, a member of the unique pathway, Hd3a, and Rice FT-like1 (RFT1; rice florigens), between the wild-type plants and the ehd2 mutants
Hd1	Os06g0275000	LOC_Os06g16370	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Severely reduced expression of these genes in ehd2 under both short- and long-day conditions suggests that Ehd2 acts as a flowering promoter mainly by up-regulating Ehd1 and by up-regulating the downstream Hd3a and RFT1 genes in the unique genetic network of photoperiodic flowering in rice
Hd1	Os06g0275000	LOC_Os06g16370	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1
Hd1	Os06g0275000	LOC_Os06g16370	spikelet	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	The results revealed that the combination of Heading-date 1 (Hd1) and Early heading date 1 (Ehd1) can reduce the number of primary branches in a panicle, resulting in smaller spikelet numbers per panicle; this occurs independently of the control of flowering time
Hd1	Os06g0275000	LOC_Os06g16370	flower	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice	First, overexpression of Hd1 causes a delay in flowering under SD conditions and this effect requires phyB, suggesting that light modulates Hd1 control of Hd3a transcription
Hd1	Os06g0275000	LOC_Os06g16370	grain	Transcriptional and Post-transcriptional Mechanisms Limit Heading Date 1 (Hd1) Function to Adapt Rice to High Latitudes.	We demonstrate that a histone fold domain scaffold formed by GRAIN YIELD, PLANT HEIGHT AND HEADING DATE 8 (Ghd8) and several NF-YC subunits can accommodate distinct proteins, including Hd1 and PSEUDO RESPONSE REGULATOR 37 (PRR37), and that the resulting OsNF-Y complex containing Hd1 can bind a specific sequence in the promoter of HEADING DATE 3A (Hd3a)
Hd1	Os06g0275000	LOC_Os06g16370	grain yield	Transcriptional and Post-transcriptional Mechanisms Limit Heading Date 1 (Hd1) Function to Adapt Rice to High Latitudes.	We demonstrate that a histone fold domain scaffold formed by GRAIN YIELD, PLANT HEIGHT AND HEADING DATE 8 (Ghd8) and several NF-YC subunits can accommodate distinct proteins, including Hd1 and PSEUDO RESPONSE REGULATOR 37 (PRR37), and that the resulting OsNF-Y complex containing Hd1 can bind a specific sequence in the promoter of HEADING DATE 3A (Hd3a)
Hd1	Os06g0275000	LOC_Os06g16370	height	Transcriptional and Post-transcriptional Mechanisms Limit Heading Date 1 (Hd1) Function to Adapt Rice to High Latitudes.	We demonstrate that a histone fold domain scaffold formed by GRAIN YIELD, PLANT HEIGHT AND HEADING DATE 8 (Ghd8) and several NF-YC subunits can accommodate distinct proteins, including Hd1 and PSEUDO RESPONSE REGULATOR 37 (PRR37), and that the resulting OsNF-Y complex containing Hd1 can bind a specific sequence in the promoter of HEADING DATE 3A (Hd3a)
Hd1	Os06g0275000	LOC_Os06g16370	heading date	Transcriptional and Post-transcriptional Mechanisms Limit Heading Date 1 (Hd1) Function to Adapt Rice to High Latitudes.	We demonstrate that a histone fold domain scaffold formed by GRAIN YIELD, PLANT HEIGHT AND HEADING DATE 8 (Ghd8) and several NF-YC subunits can accommodate distinct proteins, including Hd1 and PSEUDO RESPONSE REGULATOR 37 (PRR37), and that the resulting OsNF-Y complex containing Hd1 can bind a specific sequence in the promoter of HEADING DATE 3A (Hd3a)
Hd1	Os06g0275000	LOC_Os06g16370	plant height	Transcriptional and Post-transcriptional Mechanisms Limit Heading Date 1 (Hd1) Function to Adapt Rice to High Latitudes.	We demonstrate that a histone fold domain scaffold formed by GRAIN YIELD, PLANT HEIGHT AND HEADING DATE 8 (Ghd8) and several NF-YC subunits can accommodate distinct proteins, including Hd1 and PSEUDO RESPONSE REGULATOR 37 (PRR37), and that the resulting OsNF-Y complex containing Hd1 can bind a specific sequence in the promoter of HEADING DATE 3A (Hd3a)
Hd1	Os06g0275000	LOC_Os06g16370	breeding	Loss-of-Function Alleles of Heading date 1 (Hd1) Are Associated With Adaptation of Temperate Japonica Rice Plants to the Tropical Region.	 All 12 temperate japonica breeding lines adapted to the tropics possessed the loss-of-function alleles of Hd1 with no change of other flowering genes compared to common Korean temperate japonica varieties
Hd1	Os06g0275000	LOC_Os06g16370	height	Hd1, Ghd7, and DTH8 synergistically determine the rice heading date and yield-related agronomic traits.	 The lines carrying Hd1 alone show reduced plant height with fewer primary and secondary branches in panicles
Hd1	Os06g0275000	LOC_Os06g16370	plant height	Hd1, Ghd7, and DTH8 synergistically determine the rice heading date and yield-related agronomic traits.	 The lines carrying Hd1 alone show reduced plant height with fewer primary and secondary branches in panicles
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	height	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	vegetative	Identification of a novel gene ef7 conferring an extremely long basic vegetative growth phase in rice	Identification of a novel gene ef7 conferring an extremely long basic vegetative growth phase in rice
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	heading date	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	In addition, OsELF3-1 is involved in blue light signaling by activating early heading date 1 (Ehd1) expression to promote rice flowering under short-day (SD) conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	heading date	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	heading date	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	We previously identified a quantitative trait locus, Heading date 17 (Hd17), that is associated with a difference in flowering time between Japanese rice (Oryza sativa L
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	heading date	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flowering time	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions	Expression analyses of flowering time-related genes demonstrated that Ef7 negatively regulates the expression of Ghd7, which is a repressor of the photoperiodic control of rice flowering, and consequently up-regulates the expression of the downstream Ehd1 and FT-like genes under both SD and LD conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	growth	Identification of a novel gene ef7 conferring an extremely long basic vegetative growth phase in rice	Identification of a novel gene ef7 conferring an extremely long basic vegetative growth phase in rice
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	In addition, OsELF3-1 is involved in blue light signaling by activating early heading date 1 (Ehd1) expression to promote rice flowering under short-day (SD) conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Taken together, our results indicate OsELF3-1 is essential for circadian regulation and photoperiodic flowering in rice
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	We previously identified a quantitative trait locus, Heading date 17 (Hd17), that is associated with a difference in flowering time between Japanese rice (Oryza sativa L
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	floral	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions	Thus, our results show that Ef7 functions as a floral promoter by repressing Ghd7 expression under both SD and LD conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	floral	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flowering time	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	We previously identified a quantitative trait locus, Heading date 17 (Hd17), that is associated with a difference in flowering time between Japanese rice (Oryza sativa L
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	grain	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	grain	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	grain number	OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic flowering	Moreover, OsELF3-1 suppresses a flowering repressor grain number, plant height and heading date 7 (Ghd7) to indirectly accelerate flowering under long-day (LD) conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	grain number	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	height	Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering	Our results demonstrate that natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice's photoperiodic flowering pathway
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions	In this study, we identified and characterized the Ef7 gene, one of the rice orthologs of Arabidopsis EARLY FLOWERING 3 (ELF3)
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions	The ef7 mutant HS276, which was induced by gamma-irradiation of the japonica rice cultivar 'Gimbozu', flowers late under both SD and LD conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions	Expression analyses of flowering time-related genes demonstrated that Ef7 negatively regulates the expression of Ghd7, which is a repressor of the photoperiodic control of rice flowering, and consequently up-regulates the expression of the downstream Ehd1 and FT-like genes under both SD and LD conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions	Genetic analyses with a non-functional Ghd7 allele provided further evidence that the delayed flowering of ef7 is mediated through the Ghd7 pathway
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flower	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions	Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	heading date	HAF1 Modulates Circadian Accumulation of OsELF3 Controlling Heading Date Under Long-day Conditions in Rice.	HAF1 Modulates Circadian Accumulation of OsELF3 Controlling Heading Date Under Long-day Conditions in Rice.
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	heading date	HAF1 Modulates Circadian Accumulation of OsELF3 Controlling Heading Date Under Long-day Conditions in Rice.	 An amino acid variation (L558S) within the interaction domain of OsELF3 with HAF1 greatly contributes to the variation in heading date among japonica rice accessions
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	heading date	HAF1 Modulates Circadian Accumulation of OsELF3 Controlling Heading Date Under Long-day Conditions in Rice.	 Taken together, our findings suggest that HAF1 precisely modulates the diurnal rhythm of OsELF3 accumulation to ensure the appropriate heading date in rice
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	floral	Genetic relationship between phytochromes and OsELF3-1 reveals the mode of regulation for the suppression of phytochrome signaling in rice.	 Previous studies have suggested that OsELF3-1 has a predominant role in controlling rice photoperiodic flowering, while also contributing to the transcriptional regulation of rice floral regulators expressed in the morning
Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3	Os06g0142600	LOC_Os06g05060	flowering	The clock component OsLUX regulates rice heading through recruiting OsELF3-1 and OsELF4s to repress Hd1 and Ghd7.	 OsELF3-1 contributes to the translocation of OsLUX to the nucleus, and a compromised flowering phenotype results upon mutation of any component of the OsEC complex
Hd18	Os08g0143400	LOC_Os08g04780	heading date	Hd18, encoding histone acetylase related to Arabidopsis FLOWERING LOCUS D, is involved in the control of flowering time in rice.	Compared with those in Koshihikari, the expression levels of the flowering-time genes Early heading date 1 (Ehd1), Heading date 3a (Hd3a), and Rice flowering locus T1 (RFT1) were lower in a near-isogenic line with the Hayamasari Hd18 allele in a Koshihikari genetic background
Hd18	Os08g0143400	LOC_Os08g04780	flowering time	Hd18, encoding histone acetylase related to Arabidopsis FLOWERING LOCUS D, is involved in the control of flowering time in rice.	The difference in flowering time between the Japanese rice cultivars Koshihikari and Hayamasari was due to a single-nucleotide polymorphism within the Hd18 gene, which encodes an amine oxidase domain-containing protein and is homologous to Arabidopsis FLOWERING LOCUS D (FLD)
Hd18	Os08g0143400	LOC_Os08g04780	flowering time	Hd18, encoding histone acetylase related to Arabidopsis FLOWERING LOCUS D, is involved in the control of flowering time in rice.	The Hayamasari Hd18 allele and knockdown of Hd18 gene expression delayed the flowering time of rice plants regardless of the day-length condition
Hd18	Os08g0143400	LOC_Os08g04780	flowering time	Hd18, encoding histone acetylase related to Arabidopsis FLOWERING LOCUS D, is involved in the control of flowering time in rice.	We revealed that Hd18 acts as an accelerator in the rice-flowering pathway under both short- and long-day conditions by elevating transcription levels of Ehd1 Gene expression analysis also suggested the involvement of MADS-box genes such as OsMADS50, OsMADS51, and OsMADS56 in the Hd18-associated regulation of Ehd1 These results suggest that, like FLD, its rice homolog accelerates flowering time but is involved in rice flowering pathways that differ from the autonomous pathways in Arabidopsis
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions	Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering	NB acts by downregulating Heading date 3a (Hd3a) expression
Hd3a	Os06g0157700	LOC_Os06g06320	flowering time	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	The RNA levels of Heading date 3a (Hd3a), encoding a floral activator, are highly correlated with flowering time, and there is a high degree of polymorphism in the Heading date 1 (Hd1) protein, which is a major regulator of Hd3a expression
Hd3a	Os06g0157700	LOC_Os06g06320	flowering time	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	We also found that the type of Hd3a promoter and the level of Ehd1 expression contribute to the diversity in flowering time and Hd3a expression level
Hd3a	Os06g0157700	LOC_Os06g06320	flowering time	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice	s73 mutant plants show a number of alterations in the characteristic diurnal expression patterns of master genes involved in photoperiodic control of flowering, resulting in up-regulation of the floral integrator Heading date3a (Hd3a)
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes)
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in rice	Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in rice
Hd3a	Os06g0157700	LOC_Os06g06320	flowering time	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	Our results suggest that OsCO3 primarily controls flowering time under SD conditions by negatively regulating Hd3a and FTL expression, independent of the SD-promotion pathway
Hd3a	Os06g0157700	LOC_Os06g06320	floral	Hd3a and RFT1 are essential for flowering in rice	RICE FLOWERING LOCUS T 1 (RFT1/FT-L3) is the closest homologue of Heading date 3a (Hd3a), which is thought to encode a mobile flowering signal and promote floral transition under short-day (SD) conditions
Hd3a	Os06g0157700	LOC_Os06g06320	floral	Hd3a and RFT1 are essential for flowering in rice	These results indicate that Hd3a and RFT1 act as floral activators under SD conditions, and that RFT1 expression is partly regulated by chromatin modification
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Footprints of natural and artificial selection for photoperiod pathway genes in Oryza	We examined the footprints of natural and artificial selections for four major genes of the photoperiod pathway, namely PHYTOCHROME B (PhyB), HEADING DATE 1 (Hd1), HEADING DATE 3a (Hd3a), and EARLY HEADING DATE 1 (Ehd1), by investigation of the patterns of nucleotide polymorphisms in cultivated and wild rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	This suggests that the divergent functions of paralogs RFT1 and Hd3a, and of MADS50 and MADS51, are in part due to differential H3K36me2/3 deposition, which also correlates with higher expression levels of MADS50 and RFT1 in flowering promotion in rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	By regulating Ehd1, RFT1, and Hd3a, Ghd8 delayed flowering under long-day conditions, but promoted flowering under short-day conditions
Hd3a	Os06g0157700	LOC_Os06g06320	floral	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	In addition, expression of the Hd3a and Rice Flowering-locus T 1 (RFT1) florigen genes was up-regulated in leaves of the Hd1 Ehd1 line at the time of the floral transition
Hd3a	Os06g0157700	LOC_Os06g06320	flowering time	Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering	Because phytochrome B mutants do not respond to NB and their flowering time is not affected even under NB conditions, phyB is required for the suppression of Hd3a expression
Hd3a	Os06g0157700	LOC_Os06g06320	floral	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Thus, two distinct gating mechanisms--of the floral promoter Ehd1 and the floral repressor Ghd7--could enable manipulation of slight differences in day length to control Hd3a transcription with a critical day-length threshold
Hd3a	Os06g0157700	LOC_Os06g06320	floral	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice
Hd3a	Os06g0157700	LOC_Os06g06320	temperature	The effect of the crosstalk between photoperiod and temperature on the heading-date in rice	The expression patterns of Hd1 and Hd3a were also analyzed in different photoperiod and temperature conditions, revealing that Hd1 mRNA levels displayed similar expression patterns for different photoperiod and temperature treatments, with high expression levels at night and reduced levels in the daytime
Hd3a	Os06g0157700	LOC_Os06g06320	temperature	The effect of the crosstalk between photoperiod and temperature on the heading-date in rice	Hd3a mRNA was present at a very low level under low temperature conditions regardless of the day-length
Hd3a	Os06g0157700	LOC_Os06g06320	temperature	The effect of the crosstalk between photoperiod and temperature on the heading-date in rice	This result suggests that suppression of Hd3a expression is a principle cause of late heading under low temperature and long-day conditions
Hd3a	Os06g0157700	LOC_Os06g06320	floral	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice	s73 mutant plants show a number of alterations in the characteristic diurnal expression patterns of master genes involved in photoperiodic control of flowering, resulting in up-regulation of the floral integrator Heading date3a (Hd3a)
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice	s73 mutant plants show a number of alterations in the characteristic diurnal expression patterns of master genes involved in photoperiodic control of flowering, resulting in up-regulation of the floral integrator Heading date3a (Hd3a)
Hd3a	Os06g0157700	LOC_Os06g06320	leaf	Hd3a Protein Is a Mobile Flowering Signal in Rice	We show that the protein encoded by Hd3a, a rice ortholog of FT, moves from the leaf to the shoot apical meristem and induces flowering in rice
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Here, we show that, unlike the Arabidopsis florigen gene FT, the rice florigen gene Hd3a (Heading date 3a) is toggled by only a 30-min day-length reduction
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Hd3a expression is induced by Ehd1 (Early heading date 1) expression when blue light coincides with the morning phase set by OsGIGANTEA(OsGI)-dependent circadian clocks
Hd3a	Os06g0157700	LOC_Os06g06320	floral	Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice	Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	The quantitative real-time PCR assay revealed that DTH8 could down-regulate the transcriptions of Ehd1 (for Early heading date1) and Hd3a (for Heading date3a; a rice ortholog of FLOWERING LOCUS T) under long-day conditions
Hd3a	Os06g0157700	LOC_Os06g06320	meristem	Hd3a Protein Is a Mobile Flowering Signal in Rice	We show that the protein encoded by Hd3a, a rice ortholog of FT, moves from the leaf to the shoot apical meristem and induces flowering in rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	To assign the position of Ehd2 within the flowering pathway of rice, we compared transcript levels of previously isolated flowering-time genes, such as Ehd1, a member of the unique pathway, Hd3a, and Rice FT-like1 (RFT1; rice florigens), between the wild-type plants and the ehd2 mutants
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Severely reduced expression of these genes in ehd2 under both short- and long-day conditions suggests that Ehd2 acts as a flowering promoter mainly by up-regulating Ehd1 and by up-regulating the downstream Hd3a and RFT1 genes in the unique genetic network of photoperiodic flowering in rice
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	The expression of Hd3a and FTL decreased in these transgenic plants, whereas the expression of Hd1, Early heading date 1 (Ehd1), OsMADS51, and OsMADS50 did not significantly change
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Functional characterization of rice OsDof12	These results suggested that OsDof12 might regulate flowering by controlling the expression of Hd3a and OsMADS14
Hd3a	Os06g0157700	LOC_Os06g06320	flower	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	Furthermore, the expression of two regulators of flowering, Hd3a and OsMADS1, was also affected in the nl1 mutant
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice	In rice, a short-day plant (SDP), the CO ortholog Heading date 1 (Hd1) regulates FT ortholog Hd3a, but regulation of Hd3a by Hd1 differs from that in Arabidopsis
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice
Hd3a	Os06g0157700	LOC_Os06g06320	floral	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	The RNA levels of Heading date 3a (Hd3a), encoding a floral activator, are highly correlated with flowering time, and there is a high degree of polymorphism in the Heading date 1 (Hd1) protein, which is a major regulator of Hd3a expression
Hd3a	Os06g0157700	LOC_Os06g06320	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	Expression analyses of flowering marker genes show that Rbs1 overexpression represses the expression of Hd3a under SD and LD conditions
Hd3a	Os06g0157700	LOC_Os06g06320	flower	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a	These results suggest that GF14c acts as a negative regulator of flowering by interacting with Hd3a
Hd3a	Os06g0157700	LOC_Os06g06320	flower	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice	A single NB strongly suppressed the mRNA of Hd3a, a homolog of Arabidopsis thaliana FLOWERING LOCUS T (FT), whereas the mRNAs of OsGI and Hd1 were not affected
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice	The phyB mutation abolished the NB effect on flowering and Hd3a mRNA, indicating that the NB effect was mediated by phytochrome B
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice	Because expression of the other FT-like genes was very low and not appreciably affected by NB, our results strongly suggest that the suppression of Hd3a mRNA is the principal cause of the NB effect on flowering in rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP)	In rice, OsGI, Hd1 and Hd3a were identified as orthologs of GI, CO and FT, respectively, and are also important regulators of flowering
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes)
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions	Heading date 3a (Hd3a) has been detected as a heading-date-related quantitative trait locus in a cross between rice cultivars Nipponbare and Kasalath
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Hd3a and RFT1 are essential for flowering in rice	RICE FLOWERING LOCUS T 1 (RFT1/FT-L3) is the closest homologue of Heading date 3a (Hd3a), which is thought to encode a mobile flowering signal and promote floral transition under short-day (SD) conditions
Hd3a	Os06g0157700	LOC_Os06g06320	domestication	Footprints of natural and artificial selection for photoperiod pathway genes in Oryza	Many other features of the photoperiod genes revealed domestication signatures, which included high linkage disequilibrium (LD) within genes, the occurrence of frequent and recurrent non-functional Hd1 mutants in cultivated rice, crossovers between subtropical and tropical alleles of Hd1, and significant LD between Hd1 and Hd3a in japonica and indica
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Spin1 overexpression causes late flowering independently of daylength; expression analyses of flowering marker genes in these lines suggested that SPIN1 represses flowering by downregulating the flowering promoter gene Heading date3a (Hd3a) via Hd1-dependent mechanisms in short days and by targeting Hd1-independent factors in long days
Hd3a	Os06g0157700	LOC_Os06g06320	shoot	14-3-3 proteins act as intracellular receptors for rice Hd3a florigen	Here we show that the rice FT homologue Hd3a interacts with 14-3-3 proteins in the apical cells of shoots, yielding a complex that translocates to the nucleus and binds to the Oryza sativa (Os)FD1 transcription factor, a rice homologue of Arabidopsis thaliana FD
Hd3a	Os06g0157700	LOC_Os06g06320	heading date	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	The RNA levels of Heading date 3a (Hd3a), encoding a floral activator, are highly correlated with flowering time, and there is a high degree of polymorphism in the Heading date 1 (Hd1) protein, which is a major regulator of Hd3a expression
Hd3a	Os06g0157700	LOC_Os06g06320	shoot	Hd3a Protein Is a Mobile Flowering Signal in Rice	We show that the protein encoded by Hd3a, a rice ortholog of FT, moves from the leaf to the shoot apical meristem and induces flowering in rice
Hd3a	Os06g0157700	LOC_Os06g06320	transcription factor	14-3-3 proteins act as intracellular receptors for rice Hd3a florigen	Here we show that the rice FT homologue Hd3a interacts with 14-3-3 proteins in the apical cells of shoots, yielding a complex that translocates to the nucleus and binds to the Oryza sativa (Os)FD1 transcription factor, a rice homologue of Arabidopsis thaliana FD
Hd3a	Os06g0157700	LOC_Os06g06320	shoot apical meristem	Hd3a Protein Is a Mobile Flowering Signal in Rice	We show that the protein encoded by Hd3a, a rice ortholog of FT, moves from the leaf to the shoot apical meristem and induces flowering in rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	The RNA levels of Heading date 3a (Hd3a), encoding a floral activator, are highly correlated with flowering time, and there is a high degree of polymorphism in the Heading date 1 (Hd1) protein, which is a major regulator of Hd3a expression
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	We also found that the type of Hd3a promoter and the level of Ehd1 expression contribute to the diversity in flowering time and Hd3a expression level
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Hd3a Protein Is a Mobile Flowering Signal in Rice	We show that the protein encoded by Hd3a, a rice ortholog of FT, moves from the leaf to the shoot apical meristem and induces flowering in rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Hd3a Protein Is a Mobile Flowering Signal in Rice	Hd3a Protein Is a Mobile Flowering Signal in Rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	Transcript levels of three flowering regulators-Ehd1, OsMADS14, and Hd3a-were decreased in these mutants, whereas those of OsGI and Hd1 were unchanged
Hd3a	Os06g0157700	LOC_Os06g06320	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	These results indicate that OsMADS51 is a flowering promoter, particularly in SDs, and that this gene functions upstream of Ehd1, OsMADS14, and Hd3a
Hd3a	Os06g0157700	LOC_Os06g06320	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering	Because phytochrome B mutants do not respond to NB and their flowering time is not affected even under NB conditions, phyB is required for the suppression of Hd3a expression
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering	Our results suggest that quantitative effect of light on flowering in rice NB is mediated by the regulation of Hd3a transcription by phyB
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering	Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene	Furthermore, the precocious flowering phenotype caused by the overexpression of Hd3a, a rice florigen gene, was weakened in pap2-1 mutants
Hd3a	Os06g0157700	LOC_Os06g06320	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	The quantitative real-time PCR assay revealed that DTH8 could down-regulate the transcriptions of Ehd1 (for Early heading date1) and Hd3a (for Heading date3a; a rice ortholog of FLOWERING LOCUS T) under long-day conditions
Hd3a	Os06g0157700	LOC_Os06g06320	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Ehd1 and Hd3a can also be down-regulated by the photoperiodic flowering genes Ghd7 and Hd1 (a rice ortholog of CONSTANS)
Hd3a	Os06g0157700	LOC_Os06g06320	flower	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	This indicates that LHD1 may delay flowering by repressing the expression of Ehd1, Hd3a and RFT1 under long-day conditions
Hd3a	Os06g0157700	LOC_Os06g06320	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Spin1 overexpression causes late flowering independently of daylength; expression analyses of flowering marker genes in these lines suggested that SPIN1 represses flowering by downregulating the flowering promoter gene Heading date3a (Hd3a) via Hd1-dependent mechanisms in short days and by targeting Hd1-independent factors in long days
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Hd3a and RFT1 are essential for flowering in rice	RICE FLOWERING LOCUS T 1 (RFT1/FT-L3) is the closest homologue of Heading date 3a (Hd3a), which is thought to encode a mobile flowering signal and promote floral transition under short-day (SD) conditions
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Hd3a and RFT1 are essential for flowering in rice	Although RFT1 RNAi plants flowered normally, double RFT1-Hd3a RNAi plants did not flower up to 300 days after sowing (DAS), indicating that Hd3a and RFT1 are essential for flowering in rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Hd3a and RFT1 are essential for flowering in rice	RFT1 expression was very low in wild-type plants, but there was a marked increase in RFT1 expression by 70 DAS in Hd3a RNAi plants, which flowered 90 DAS
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Hd3a and RFT1 are essential for flowering in rice	Hd3a and RFT1 are essential for flowering in rice
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice	Here, we report that phytochrome B (phyB)-mediated suppression of Hd3a is a primary cause of long-day suppression of flowering in rice, based on the three complementary discoveries
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice	First, overexpression of Hd1 causes a delay in flowering under SD conditions and this effect requires phyB, suggesting that light modulates Hd1 control of Hd3a transcription
Hd3a	Os06g0157700	LOC_Os06g06320	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	In addition, expression of the Hd3a and Rice Flowering-locus T 1 (RFT1) florigen genes was up-regulated in leaves of the Hd1 Ehd1 line at the time of the floral transition
Hd3a	Os06g0157700	LOC_Os06g06320	flower	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	Our results suggest that OsCO3 primarily controls flowering time under SD conditions by negatively regulating Hd3a and FTL expression, independent of the SD-promotion pathway
Hd3a	Os06g0157700	LOC_Os06g06320	floral	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	We also found that LHD1 could down-regulate the expression of several floral transition activators such as Ehd1, Hd3a and RFT1 under long-day conditions, but not under short-day conditions
Hd3a	Os06g0157700	LOC_Os06g06320	transcription factor	Hd3a promotes lateral branching in rice.	Finally, we show that Hd3a promotes branching independently from strigolactone and FC1, a transcription factor that inhibits branching in rice
Hd3a	Os06g0157700	LOC_Os06g06320	meristem	Hd3a promotes lateral branching in rice.	Hd3a protein produced in the phloem reached the axillary meristem in the lateral bud, and its transport was required for promotion of branching
Hd3a	Os06g0157700	LOC_Os06g06320	branching	Hd3a promotes lateral branching in rice.	Hd3a promotes lateral branching in rice.
Hd3a	Os06g0157700	LOC_Os06g06320	branching	Hd3a promotes lateral branching in rice.	We show here that Hd3a protein accumulated in axillary meristems to promote branching and that FAC formation was required
Hd3a	Os06g0157700	LOC_Os06g06320	branching	Hd3a promotes lateral branching in rice.	Analysis of transgenic plants revealed that Hd3a promotes branching through lateral bud outgrowth
Hd3a	Os06g0157700	LOC_Os06g06320	branching	Hd3a promotes lateral branching in rice.	Hd3a protein produced in the phloem reached the axillary meristem in the lateral bud, and its transport was required for promotion of branching
Hd3a	Os06g0157700	LOC_Os06g06320	branching	Hd3a promotes lateral branching in rice.	Moreover, mutant Hd3a proteins defective in FAC formation but competent in transport failed to promote branching
Hd3a	Os06g0157700	LOC_Os06g06320	branching	Hd3a promotes lateral branching in rice.	Finally, we show that Hd3a promotes branching independently from strigolactone and FC1, a transcription factor that inhibits branching in rice
Hd3a	Os06g0157700	LOC_Os06g06320	branching	Hd3a promotes lateral branching in rice.	Together, these results suggest that Hd3a functions as a mobile signal for branching in rice
Hd3a	Os06g0157700	LOC_Os06g06320	strigolactone	Hd3a promotes lateral branching in rice.	Finally, we show that Hd3a promotes branching independently from strigolactone and FC1, a transcription factor that inhibits branching in rice
Hd3a	Os06g0157700	LOC_Os06g06320	axillary meristem	Hd3a promotes lateral branching in rice.	We show here that Hd3a protein accumulated in axillary meristems to promote branching and that FAC formation was required
Hd3a	Os06g0157700	LOC_Os06g06320	axillary meristem	Hd3a promotes lateral branching in rice.	Hd3a protein produced in the phloem reached the axillary meristem in the lateral bud, and its transport was required for promotion of branching
Hd3a	Os06g0157700	LOC_Os06g06320	phloem	Hd3a promotes lateral branching in rice.	Hd3a protein produced in the phloem reached the axillary meristem in the lateral bud, and its transport was required for promotion of branching
Hd3a	Os06g0157700	LOC_Os06g06320	shoot	FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.	Here, we confirm that Hd3a coexists, in the same regions of the rice shoot apex, with the other components of the florigen activation complex and its transcriptional targets
Hd3a	Os06g0157700	LOC_Os06g06320	transcription factor	FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.	The 14-3-3 proteins mediate the interaction of Hd3a with the transcription factor OsFD1 to form a ternary structure called the florigen activation complex on the promoter of OsMADS15, a rice APETALA1 ortholog
Hd3a	Os06g0157700	LOC_Os06g06320	flowering time	Foreign Cry1Ab/c Delays Flowering in Insect-Resistant Transgenic Rice via Interaction With Hd3a Florigen	Thus, the downregulation of Hd3a expression and the interaction between Cry1Ab/c and Hd3a interfere with Hd3a protein expression and might cooperatively delay HH1 flowering time
Hd3a	Os06g0157700	LOC_Os06g06320	Ubiquitin	Foreign Cry1Ab/c Delays Flowering in Insect-Resistant Transgenic Rice via Interaction With Hd3a Florigen	We quantified the following: the expression of five major flowering genes in HH1, T1C-19, and MH63; florigen Hd3a protein expression levels in HH1 and MH63; interactions between Cry1Ab/c and the five main flowering proteins; and the effects of E3s ubiquitin ligase-mediated Cry1Ab/c expression on florigen Hd3a
Hd3a	Os06g0157700	LOC_Os06g06320	flowering	Foreign Cry1Ab/c Delays Flowering in Insect-Resistant Transgenic Rice via Interaction With Hd3a Florigen	Foreign Cry1Ab/c Delays Flowering in Insect-Resistant Transgenic Rice via Interaction With Hd3a Florigen
Hd3a	Os06g0157700	LOC_Os06g06320	flowering	Foreign Cry1Ab/c Delays Flowering in Insect-Resistant Transgenic Rice via Interaction With Hd3a Florigen	We quantified the following: the expression of five major flowering genes in HH1, T1C-19, and MH63; florigen Hd3a protein expression levels in HH1 and MH63; interactions between Cry1Ab/c and the five main flowering proteins; and the effects of E3s ubiquitin ligase-mediated Cry1Ab/c expression on florigen Hd3a
Hd3a	Os06g0157700	LOC_Os06g06320	flowering	Foreign Cry1Ab/c Delays Flowering in Insect-Resistant Transgenic Rice via Interaction With Hd3a Florigen	Thus, the downregulation of Hd3a expression and the interaction between Cry1Ab/c and Hd3a interfere with Hd3a protein expression and might cooperatively delay HH1 flowering time
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	grains per panicle	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Map-based cloning reveals that DTH8 encodes a putative HAP3 subunit of the CCAAT-box-binding transcription factor and the complementary experiment increased significantly days to heading, plant height, and number of grains per panicle in CSSL61 (a chromosome segment substitution line that carries the nonfunctional DTH8 allele) with the Asominori functional DTH8 allele under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	grain yield	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Here, we report the cloning and characterization of Ghd8, a major QTL with pleiotropic effects on grain yield, heading date, and plant height
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	Here, through map-based cloning, we identified a major quantitative trait loci (QTL) LHD1 (Late Heading Date 1), an allele of DTH8/Ghd8, which controls the late heading date of wild rice and encodes a putative HAP3/NF-YB/CBF-A subunit of the CCAAT-box-binding transcription factor
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	yield	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Taken together, these data indicate that DTH8 probably plays an important role in the signal network of photoperiodic flowering as a novel suppressor as well as in the regulation of plant height and yield potential
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	yield	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	height	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Here, we report the cloning and characterization of Ghd8, a major QTL with pleiotropic effects on grain yield, heading date, and plant height
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	height	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	height	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Map-based cloning reveals that DTH8 encodes a putative HAP3 subunit of the CCAAT-box-binding transcription factor and the complementary experiment increased significantly days to heading, plant height, and number of grains per panicle in CSSL61 (a chromosome segment substitution line that carries the nonfunctional DTH8 allele) with the Asominori functional DTH8 allele under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	height	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Meanwhile, the transcription of DTH8 has been proved to be independent of Ghd7 and Hd1, and the natural mutation of this gene caused weak photoperiod sensitivity and shorter plant height
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	height	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Taken together, these data indicate that DTH8 probably plays an important role in the signal network of photoperiodic flowering as a novel suppressor as well as in the regulation of plant height and yield potential
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	height	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	tiller	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Ghd8 up-regulated MOC1, a key gene controlling tillering and branching; this increased the number of tillers, primary and secondary branches, thus producing 50% more grains per plant
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Here, we report the cloning and characterization of Ghd8, a major QTL with pleiotropic effects on grain yield, heading date, and plant height
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	yield	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Here, we report the cloning and characterization of Ghd8, a major QTL with pleiotropic effects on grain yield, heading date, and plant height
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	yield	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Our results demonstrated the important roles of Ghd8 in rice yield formation and flowering, as well as its opposite functions in flowering between rice and Arabidopsis under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flower	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation	The Hd5 gene controlling heading date (flowering time) generated variations in heading date among cultivars adapted to Hokkaido, where is the northernmost region of Japan and one of the northern limits of rice cultivation in the world
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	grain	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Here, we report the cloning and characterization of Ghd8, a major QTL with pleiotropic effects on grain yield, heading date, and plant height
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	grain	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Ghd8 up-regulated MOC1, a key gene controlling tillering and branching; this increased the number of tillers, primary and secondary branches, thus producing 50% more grains per plant
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	grain	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flower	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	By regulating Ehd1, RFT1, and Hd3a, Ghd8 delayed flowering under long-day conditions, but promoted flowering under short-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flower	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	The ectopic expression of Ghd8 in Arabidopsis caused early flowering by 10 d-a situation similar to the one observed by its homolog AtHAP3b, when compared to wild-type under long-day conditions; these findings indicate the conserved function of Ghd8 and AtHAP3b in flowering in Arabidopsis
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flower	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Our results demonstrated the important roles of Ghd8 in rice yield formation and flowering, as well as its opposite functions in flowering between rice and Arabidopsis under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	The quantitative real-time PCR assay revealed that DTH8 could down-regulate the transcriptions of Ehd1 (for Early heading date1) and Hd3a (for Heading date3a; a rice ortholog of FLOWERING LOCUS T) under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	tillering	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Ghd8 up-regulated MOC1, a key gene controlling tillering and branching; this increased the number of tillers, primary and secondary branches, thus producing 50% more grains per plant
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flower	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response	By using near-isogenic lines with functional or deficient alleles of several rice flowering-time genes, we observed significant digenetic interactions between Hd16 and four other flowering-time genes (Ghd7, Hd1, DTH8 and Hd2)
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	floral	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	We also found that LHD1 could down-regulate the expression of several floral transition activators such as Ehd1, Hd3a and RFT1 under long-day conditions, but not under short-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	The quantitative real-time PCR assay revealed that DTH8 could down-regulate the transcriptions of Ehd1 (for Early heading date1) and Hd3a (for Heading date3a; a rice ortholog of FLOWERING LOCUS T) under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Taken together, these data indicate that DTH8 probably plays an important role in the signal network of photoperiodic flowering as a novel suppressor as well as in the regulation of plant height and yield potential
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flower	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	grain	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Map-based cloning reveals that DTH8 encodes a putative HAP3 subunit of the CCAAT-box-binding transcription factor and the complementary experiment increased significantly days to heading, plant height, and number of grains per panicle in CSSL61 (a chromosome segment substitution line that carries the nonfunctional DTH8 allele) with the Asominori functional DTH8 allele under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation	The Hd5 gene controlling heading date (flowering time) generated variations in heading date among cultivars adapted to Hokkaido, where is the northernmost region of Japan and one of the northern limits of rice cultivation in the world
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation	The association of the Hd5 genotype with heading date and genetical analysis clearly showed that the loss-of-function Hd5 has an important role in exhibiting earlier heading among a local population in Hokkaido
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation	These results demonstrated that Hd5 plays roles not only in generating early heading in variations of heading date among a local population in Hokkaido, but also in extremely early heading for adaptation to northern limits of rice cultivation
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	transcription factor	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	Here, through map-based cloning, we identified a major quantitative trait loci (QTL) LHD1 (Late Heading Date 1), an allele of DTH8/Ghd8, which controls the late heading date of wild rice and encodes a putative HAP3/NF-YB/CBF-A subunit of the CCAAT-box-binding transcription factor
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	panicle	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Map-based cloning reveals that DTH8 encodes a putative HAP3 subunit of the CCAAT-box-binding transcription factor and the complementary experiment increased significantly days to heading, plant height, and number of grains per panicle in CSSL61 (a chromosome segment substitution line that carries the nonfunctional DTH8 allele) with the Asominori functional DTH8 allele under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flower	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	This indicates that LHD1 may delay flowering by repressing the expression of Ehd1, Hd3a and RFT1 under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	branching	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Ghd8 up-regulated MOC1, a key gene controlling tillering and branching; this increased the number of tillers, primary and secondary branches, thus producing 50% more grains per plant
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	transcription factor	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously	Map-based cloning reveals that DTH8 encodes a putative HAP3 subunit of the CCAAT-box-binding transcription factor and the complementary experiment increased significantly days to heading, plant height, and number of grains per panicle in CSSL61 (a chromosome segment substitution line that carries the nonfunctional DTH8 allele) with the Asominori functional DTH8 allele under long-day conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	Sequence analysis revealed that several variants in the coding region of LHD1 were correlated with a late heading date, and a further complementary study successfully rescued the phenotype
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	breeding	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation	Distinct distribution of the loss-of-function Hd5 revealed that this mutation event of the 19-bp deletion occurred in a local landrace Bouzu and that this mutation may have been selected as an early-heading variety in rice breeding programs in Hokkaido in the early 1900s
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flowering time	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation	The Hd5 gene controlling heading date (flowering time) generated variations in heading date among cultivars adapted to Hokkaido, where is the northernmost region of Japan and one of the northern limits of rice cultivation in the world
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	yield	EF8 is involved in photoperiodic flowering pathway and chlorophyll biogenesis in rice.	Our data indicate that EF8 plays an important role in rice photoperiodic flowering pathway as well as yield potential and chlorophyll biogenesis and will be an important target for rice breeding programs
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	breeding	EF8 is involved in photoperiodic flowering pathway and chlorophyll biogenesis in rice.	Our data indicate that EF8 plays an important role in rice photoperiodic flowering pathway as well as yield potential and chlorophyll biogenesis and will be an important target for rice breeding programs
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	nucleus	EF8 is involved in photoperiodic flowering pathway and chlorophyll biogenesis in rice.	EF8 encodes a putative HAP3 subunit of the CCAAT-box-binding transcription factor, which is localized to the nucleus
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	chlorophyll biogenesis	EF8 is involved in photoperiodic flowering pathway and chlorophyll biogenesis in  rice	EF8 is involved in photoperiodic flowering pathway and chlorophyll biogenesis in  rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	transcription factor	Fine Mapping of Carbon Assimilation Rate 8, a Quantitative Trait Locus for Flag Leaf Nitrogen Content, Stomatal Conductance and Photosynthesis in Rice.	Fine mapping suggested that CAR8 encodes a putative Heme Activator Protein 3 (OsHAP3) subunit of a CCAAT-box-binding transcription factor called OsHAP3H
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	photosynthesis	Fine Mapping of Carbon Assimilation Rate 8, a Quantitative Trait Locus for Flag Leaf Nitrogen Content, Stomatal Conductance and Photosynthesis in Rice.	This indicates that CAR8 affects multiple physiological aspects relating to photosynthesis
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	photosynthesis	Fine Mapping of Carbon Assimilation Rate 8, a Quantitative Trait Locus for Flag Leaf Nitrogen Content, Stomatal Conductance and Photosynthesis in Rice.	The detailed analysis of molecular functions of CAR8 would help to understand the association between photosynthesis and flowering and demonstrate specific genetic mechanisms that can be exploited to improve photosynthesis in rice and potentially other crops
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	R protein	Fine Mapping of Carbon Assimilation Rate 8, a Quantitative Trait Locus for Flag Leaf Nitrogen Content, Stomatal Conductance and Photosynthesis in Rice.	Fine mapping suggested that CAR8 encodes a putative Heme Activator Protein 3 (OsHAP3) subunit of a CCAAT-box-binding transcription factor called OsHAP3H
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	tolerance	A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice.	A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice.
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	tolerance	A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice.	 Transgenic analyses revealed that higher expression levels of Ghd8 delayed heading date and enhanced cold tolerance in rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	cold tolerance	A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice.	A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice.
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	cold tolerance	A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice.	 Transgenic analyses revealed that higher expression levels of Ghd8 delayed heading date and enhanced cold tolerance in rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice.	 Transgenic analyses revealed that higher expression levels of Ghd8 delayed heading date and enhanced cold tolerance in rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	grain	Ghd8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7.	 Ghd8 and Ghd7, two major flowering genes, have similar functions and large pleiotropic effects in controlling the heading date, plant height and grain yield of rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	grain yield	Ghd8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7.	 Ghd8 and Ghd7, two major flowering genes, have similar functions and large pleiotropic effects in controlling the heading date, plant height and grain yield of rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	yield	Ghd8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7.	 Ghd8 and Ghd7, two major flowering genes, have similar functions and large pleiotropic effects in controlling the heading date, plant height and grain yield of rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	height	Ghd8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7.	 Ghd8 and Ghd7, two major flowering genes, have similar functions and large pleiotropic effects in controlling the heading date, plant height and grain yield of rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	Ghd8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7.	 Ghd8 and Ghd7, two major flowering genes, have similar functions and large pleiotropic effects in controlling the heading date, plant height and grain yield of rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	plant height	Ghd8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7.	 Ghd8 and Ghd7, two major flowering genes, have similar functions and large pleiotropic effects in controlling the heading date, plant height and grain yield of rice
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flowering time	Ghd8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7.	The results of this study help to elucidate the genetic and molecular bases of Ghd8 and Ghd7 interactions, indicating that Ghd8 acts upstream of Ghd7 to activate its transcription, which inhibits Hd3a expression and thus affects flowering time and rice adaptation
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flowering	Strong photoperiod sensitivity is controlled by cooperation and competition among Hd1, Ghd7 and DTH8 in rice heading	 However, under LD conditions, Hd1 promotes Ghd7 expression and is recruited by Ghd7 and/or DTH8 to form repressive complexes that collaboratively suppress the Ehd1-Hd3a/RFT1 pathway to block heading, but under SD conditions Hd1 competes with the complexes to promote Hd3a/RFT1 expression, playing a tradeoff relationship with PS flowering
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	Hd1, Ghd7, and DTH8 synergistically determine the rice heading date and yield-related agronomic traits.	Hd1, Ghd7, and DTH8 synergistically determine the rice heading date and yield-related agronomic traits.
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	Hd1, Ghd7, and DTH8 synergistically determine the rice heading date and yield-related agronomic traits.	 In this study, we systematically analyze the heading date, PS, and agronomic traits of eight homozygous lines with various combinations of Hd1, Ghd7, and DTH8 alleles in the prr37 background under long-day (LD) and short-day (SD) conditions, respectively
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	panicle	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 DTH8 up-regulates the transcription of RFT1, Hd3a, GHD7, MOC1, and RCN1 in IR64 at the pre-flowering stage and plays a role in early flowering, increased number of tillers, enhanced panicle branching, and improved tolerance towards drought and salinity stress at the reproductive stage
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	drought	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 DTH8 up-regulates the transcription of RFT1, Hd3a, GHD7, MOC1, and RCN1 in IR64 at the pre-flowering stage and plays a role in early flowering, increased number of tillers, enhanced panicle branching, and improved tolerance towards drought and salinity stress at the reproductive stage
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	drought	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 Taken together, DTH8 is a positive regulator of the network of genes related to early flowering/heading, higher yield, as well as salinity and drought stress tolerance, thus, enabling the crops to adapt to a wide range of climatic conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	salinity	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 DTH8 up-regulates the transcription of RFT1, Hd3a, GHD7, MOC1, and RCN1 in IR64 at the pre-flowering stage and plays a role in early flowering, increased number of tillers, enhanced panicle branching, and improved tolerance towards drought and salinity stress at the reproductive stage
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	salinity	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 Taken together, DTH8 is a positive regulator of the network of genes related to early flowering/heading, higher yield, as well as salinity and drought stress tolerance, thus, enabling the crops to adapt to a wide range of climatic conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	tolerance	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 We demonstrate DTH8 to be positively influencing the yield, heading date, and stress tolerance in IR64
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	tolerance	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 DTH8 up-regulates the transcription of RFT1, Hd3a, GHD7, MOC1, and RCN1 in IR64 at the pre-flowering stage and plays a role in early flowering, increased number of tillers, enhanced panicle branching, and improved tolerance towards drought and salinity stress at the reproductive stage
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	yield	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 In addition, DTH8 overexpressing transgenic lines showed favorable physiological parameters causing less yield penalty under stress than the WT plants
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	stress	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	stress	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 We demonstrate DTH8 to be positively influencing the yield, heading date, and stress tolerance in IR64
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	stress	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 DTH8 up-regulates the transcription of RFT1, Hd3a, GHD7, MOC1, and RCN1 in IR64 at the pre-flowering stage and plays a role in early flowering, increased number of tillers, enhanced panicle branching, and improved tolerance towards drought and salinity stress at the reproductive stage
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	stress	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 In addition, DTH8 overexpressing transgenic lines showed favorable physiological parameters causing less yield penalty under stress than the WT plants
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	stress	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 Taken together, DTH8 is a positive regulator of the network of genes related to early flowering/heading, higher yield, as well as salinity and drought stress tolerance, thus, enabling the crops to adapt to a wide range of climatic conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	stress tolerance	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 We demonstrate DTH8 to be positively influencing the yield, heading date, and stress tolerance in IR64
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	stress tolerance	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 Taken together, DTH8 is a positive regulator of the network of genes related to early flowering/heading, higher yield, as well as salinity and drought stress tolerance, thus, enabling the crops to adapt to a wide range of climatic conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	reproductive	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 DTH8 up-regulates the transcription of RFT1, Hd3a, GHD7, MOC1, and RCN1 in IR64 at the pre-flowering stage and plays a role in early flowering, increased number of tillers, enhanced panicle branching, and improved tolerance towards drought and salinity stress at the reproductive stage
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	salinity stress	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 DTH8 up-regulates the transcription of RFT1, Hd3a, GHD7, MOC1, and RCN1 in IR64 at the pre-flowering stage and plays a role in early flowering, increased number of tillers, enhanced panicle branching, and improved tolerance towards drought and salinity stress at the reproductive stage
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	heading date	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 We demonstrate DTH8 to be positively influencing the yield, heading date, and stress tolerance in IR64
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	drought stress	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 Taken together, DTH8 is a positive regulator of the network of genes related to early flowering/heading, higher yield, as well as salinity and drought stress tolerance, thus, enabling the crops to adapt to a wide range of climatic conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	drought stress 	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 Taken together, DTH8 is a positive regulator of the network of genes related to early flowering/heading, higher yield, as well as salinity and drought stress tolerance, thus, enabling the crops to adapt to a wide range of climatic conditions
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	ER stress	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	 In addition, DTH8 overexpressing transgenic lines showed favorable physiological parameters causing less yield penalty under stress than the WT plants
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flowering	The amino acid residue E96 orf Ghd8 is crucial for the formation of the flowering repression complex Ghd7-Ghd8-OsHAP5C in rice.	The amino acid residue E96 orf Ghd8 is crucial for the formation of the flowering repression complex Ghd7-Ghd8-OsHAP5C in rice.
Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11	Os08g0174500	LOC_Os08g07740	flowering	The amino acid residue E96 orf Ghd8 is crucial for the formation of the flowering repression complex Ghd7-Ghd8-OsHAP5C in rice.	 MutMap analysis revealed that SOG7 is allelic to Ghd8 and delayed flowering under long-day (LD) conditions
Hd6|CK2	Os03g0762000	LOC_Os03g55389	flowering time	The role of casein kinase II in flowering time regulation has diversified during evolution	In rice (Oryza sativa), a short-day plant, Heading date6 (Hd6) encodes a CK2alpha subunit that delays flowering time under long-day conditions
Hd6|CK2	Os03g0762000	LOC_Os03g55389	flowering time	The role of casein kinase II in flowering time regulation has diversified during evolution	Here, we demonstrate that control of flowering time in rice by the Hd6 CK2alpha subunit requires a functional Hd1 gene (an Arabidopsis CONSTANS ortholog) and is independent of the circadian clock mechanism
Hd6|CK2	Os03g0762000	LOC_Os03g55389	flower	The role of casein kinase II in flowering time regulation has diversified during evolution	In rice (Oryza sativa), a short-day plant, Heading date6 (Hd6) encodes a CK2alpha subunit that delays flowering time under long-day conditions
Hd6|CK2	Os03g0762000	LOC_Os03g55389	flower	The role of casein kinase II in flowering time regulation has diversified during evolution	Here, we demonstrate that control of flowering time in rice by the Hd6 CK2alpha subunit requires a functional Hd1 gene (an Arabidopsis CONSTANS ortholog) and is independent of the circadian clock mechanism
Hd6|CK2	Os03g0762000	LOC_Os03g55389	flower	The role of casein kinase II in flowering time regulation has diversified during evolution	The circadian clock component CIRCADIAN CLOCK ASSOCIATED1 (CCA1) is a CK2 target in Arabidopsis, where it influences photoperiodic flowering
Hd6|CK2	Os03g0762000	LOC_Os03g55389	flower	The role of casein kinase II in flowering time regulation has diversified during evolution	In rice (Oryza sativa), a short-day plant, Heading date6 (Hd6) encodes a CK2alpha subunit that delays flowering time under long-day conditions
Hd6|CK2	Os03g0762000	LOC_Os03g55389	flower	The role of casein kinase II in flowering time regulation has diversified during evolution	Here, we demonstrate that control of flowering time in rice by the Hd6 CK2alpha subunit requires a functional Hd1 gene (an Arabidopsis CONSTANS ortholog) and is independent of the circadian clock mechanism
Hd6|CK2	Os03g0762000	LOC_Os03g55389	flower	The role of casein kinase II in flowering time regulation has diversified during evolution	These findings imply that the role of CK2 in flowering-time regulation in higher plants has diversified during evolution
Hd6|CK2	Os03g0762000	LOC_Os03g55389	heading date	The role of casein kinase II in flowering time regulation has diversified during evolution	In rice (Oryza sativa), a short-day plant, Heading date6 (Hd6) encodes a CK2alpha subunit that delays flowering time under long-day conditions
Hd6|CK2	Os03g0762000	LOC_Os03g55389	heading date	Identification of Heading Date Quantitative Trait Locus Hd6 and Characterization of Its Epistatic Interactions With Hd2 in Rice Using Advanced Backcross Progeny	Identification of Heading Date Quantitative Trait Locus Hd6 and Characterization of Its Epistatic Interactions With Hd2 in Rice Using Advanced Backcross Progeny
HDA703	Os02g0214900	LOC_Os02g12350	BR	Ammonium protects rice against rice stripe virus by activating HDA703/OsBZR1-mediated BR signaling.	 We also show that in contrast to NO(3)(-), NH(4)(+) does not affect BR biosynthesis but promotes BR signaling by upregulating the expression of HDA703 and promoting the accumulation of OsBZR1 in rice shoots
HDA703	Os02g0214900	LOC_Os02g12350	BR signaling	Ammonium protects rice against rice stripe virus by activating HDA703/OsBZR1-mediated BR signaling.	 We also show that in contrast to NO(3)(-), NH(4)(+) does not affect BR biosynthesis but promotes BR signaling by upregulating the expression of HDA703 and promoting the accumulation of OsBZR1 in rice shoots
HDA703	Os02g0214900	LOC_Os02g12350	resistance	Ammonium protects rice against rice stripe virus by activating HDA703/OsBZR1-mediated BR signaling.	 Consistently, increase of the expression of HDA703 or decrease of the expression of Ghd7 enhances rice resistance to RSV
HDA703	Os02g0214900	LOC_Os02g12350	 BR 	Ammonium protects rice against rice stripe virus by activating HDA703/OsBZR1-mediated BR signaling.	 We also show that in contrast to NO(3)(-), NH(4)(+) does not affect BR biosynthesis but promotes BR signaling by upregulating the expression of HDA703 and promoting the accumulation of OsBZR1 in rice shoots
HDA703	Os02g0214900	LOC_Os02g12350	RSV	Ammonium protects rice against rice stripe virus by activating HDA703/OsBZR1-mediated BR signaling.	 Consistently, increase of the expression of HDA703 or decrease of the expression of Ghd7 enhances rice resistance to RSV
HDA704	Os07g0164100	LOC_Os07g06980	drought	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.
HDA704	Os07g0164100	LOC_Os07g06980	drought	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	HDA704 enhances drought and salt tolerance via stomata-regulated mechanism
HDA704	Os07g0164100	LOC_Os07g06980	drought	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	In this study on rice, we identified the RPD3/HDA1-type histone deacetylase HDA704 as a positive regulatory factor in drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	drought	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	HDA704 was induced by drought and salt stresses
HDA704	Os07g0164100	LOC_Os07g06980	drought	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Overexpression of HDA704 in transgenic rice promoted stomatal closure, decreased the number of stomata and slowed down the rate of water loss, consequently resulting in increased drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	drought	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	By contrast, knockdown of HDA704 in transgenic rice decreased stomatal closure and accelerated the rate of water loss, leading to decrease drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	drought	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Collectively, these findings reveal that HDA704 positively regulates drought and salt tolerance by repressing the expression of DST and ABIL2
HDA704	Os07g0164100	LOC_Os07g06980	salt	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.
HDA704	Os07g0164100	LOC_Os07g06980	salt	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	HDA704 enhances drought and salt tolerance via stomata-regulated mechanism
HDA704	Os07g0164100	LOC_Os07g06980	salt	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	In this study on rice, we identified the RPD3/HDA1-type histone deacetylase HDA704 as a positive regulatory factor in drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	salt	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	HDA704 was induced by drought and salt stresses
HDA704	Os07g0164100	LOC_Os07g06980	salt	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Overexpression of HDA704 in transgenic rice promoted stomatal closure, decreased the number of stomata and slowed down the rate of water loss, consequently resulting in increased drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	salt	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	By contrast, knockdown of HDA704 in transgenic rice decreased stomatal closure and accelerated the rate of water loss, leading to decrease drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	salt	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Collectively, these findings reveal that HDA704 positively regulates drought and salt tolerance by repressing the expression of DST and ABIL2
HDA704	Os07g0164100	LOC_Os07g06980	tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.
HDA704	Os07g0164100	LOC_Os07g06980	tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	HDA704 enhances drought and salt tolerance via stomata-regulated mechanism
HDA704	Os07g0164100	LOC_Os07g06980	tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	In this study on rice, we identified the RPD3/HDA1-type histone deacetylase HDA704 as a positive regulatory factor in drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Overexpression of HDA704 in transgenic rice promoted stomatal closure, decreased the number of stomata and slowed down the rate of water loss, consequently resulting in increased drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	By contrast, knockdown of HDA704 in transgenic rice decreased stomatal closure and accelerated the rate of water loss, leading to decrease drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Collectively, these findings reveal that HDA704 positively regulates drought and salt tolerance by repressing the expression of DST and ABIL2
HDA704	Os07g0164100	LOC_Os07g06980	salt tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.
HDA704	Os07g0164100	LOC_Os07g06980	salt tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	HDA704 enhances drought and salt tolerance via stomata-regulated mechanism
HDA704	Os07g0164100	LOC_Os07g06980	salt tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	In this study on rice, we identified the RPD3/HDA1-type histone deacetylase HDA704 as a positive regulatory factor in drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	salt tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Overexpression of HDA704 in transgenic rice promoted stomatal closure, decreased the number of stomata and slowed down the rate of water loss, consequently resulting in increased drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	salt tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	By contrast, knockdown of HDA704 in transgenic rice decreased stomatal closure and accelerated the rate of water loss, leading to decrease drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	salt tolerance	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Collectively, these findings reveal that HDA704 positively regulates drought and salt tolerance by repressing the expression of DST and ABIL2
HDA704	Os07g0164100	LOC_Os07g06980	salt stress	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	HDA704 was induced by drought and salt stresses
HDA704	Os07g0164100	LOC_Os07g06980	stomatal	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.
HDA704	Os07g0164100	LOC_Os07g06980	stomatal	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	HDA704 negatively regulates stomatal aperture and density, repressing the transcription of DST and ABIL2 by histone deacetylation modification
HDA704	Os07g0164100	LOC_Os07g06980	stomatal	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Overexpression of HDA704 in transgenic rice promoted stomatal closure, decreased the number of stomata and slowed down the rate of water loss, consequently resulting in increased drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	stomatal	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	By contrast, knockdown of HDA704 in transgenic rice decreased stomatal closure and accelerated the rate of water loss, leading to decrease drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	stomata	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Overexpression of HDA704 in transgenic rice promoted stomatal closure, decreased the number of stomata and slowed down the rate of water loss, consequently resulting in increased drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	water loss	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Overexpression of HDA704 in transgenic rice promoted stomatal closure, decreased the number of stomata and slowed down the rate of water loss, consequently resulting in increased drought and salt tolerance
HDA704	Os07g0164100	LOC_Os07g06980	water loss	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	By contrast, knockdown of HDA704 in transgenic rice decreased stomatal closure and accelerated the rate of water loss, leading to decrease drought and salt tolerance
HDA705	Os08g0344100	LOC_Os08g25570	resistance	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Overexpression of HDA705 in rice decreased ABA and salt stress resistance during seed germination
HDA705	Os08g0344100	LOC_Os08g25570	resistance	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Moreover, overexpression of HDA705 in rice enhanced osmotic stress resistance during the seedling stage
HDA705	Os08g0344100	LOC_Os08g25570	seed	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
HDA705	Os08g0344100	LOC_Os08g25570	seed	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Overexpression of HDA705 in rice decreased ABA and salt stress resistance during seed germination
HDA705	Os08g0344100	LOC_Os08g25570	seed	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Delayed seed germination of HDA705 overexpression lines was associated with down-regulated expression of GA biosynthetic genes and up-regulation of ABA biosynthetic genes
HDA705	Os08g0344100	LOC_Os08g25570	seed	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Our findings demonstrate that HDA705 may play a role in regulating seed germination and the response to abiotic stresses in rice
HDA705	Os08g0344100	LOC_Os08g25570	seedling	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Moreover, overexpression of HDA705 in rice enhanced osmotic stress resistance during the seedling stage
HDA705	Os08g0344100	LOC_Os08g25570	salt	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Overexpression of HDA705 in rice decreased ABA and salt stress resistance during seed germination
HDA705	Os08g0344100	LOC_Os08g25570	seed germination	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
HDA705	Os08g0344100	LOC_Os08g25570	seed germination	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Overexpression of HDA705 in rice decreased ABA and salt stress resistance during seed germination
HDA705	Os08g0344100	LOC_Os08g25570	seed germination	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Delayed seed germination of HDA705 overexpression lines was associated with down-regulated expression of GA biosynthetic genes and up-regulation of ABA biosynthetic genes
HDA705	Os08g0344100	LOC_Os08g25570	seed germination	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Our findings demonstrate that HDA705 may play a role in regulating seed germination and the response to abiotic stresses in rice
HDA705	Os08g0344100	LOC_Os08g25570	abiotic stress	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
HDA705	Os08g0344100	LOC_Os08g25570	abiotic stress	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Our findings demonstrate that HDA705 may play a role in regulating seed germination and the response to abiotic stresses in rice
HDA705	Os08g0344100	LOC_Os08g25570	ABA	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
HDA705	Os08g0344100	LOC_Os08g25570	ABA	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Overexpression of HDA705 in rice decreased ABA and salt stress resistance during seed germination
HDA705	Os08g0344100	LOC_Os08g25570	ABA	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Delayed seed germination of HDA705 overexpression lines was associated with down-regulated expression of GA biosynthetic genes and up-regulation of ABA biosynthetic genes
HDA705	Os08g0344100	LOC_Os08g25570	salt stress	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Overexpression of HDA705 in rice decreased ABA and salt stress resistance during seed germination
HDA705	Os08g0344100	LOC_Os08g25570	stress	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Overexpression of HDA705 in rice decreased ABA and salt stress resistance during seed germination
HDA705	Os08g0344100	LOC_Os08g25570	stress	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Moreover, overexpression of HDA705 in rice enhanced osmotic stress resistance during the seedling stage
HDA705	Os08g0344100	LOC_Os08g25570	ga	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Delayed seed germination of HDA705 overexpression lines was associated with down-regulated expression of GA biosynthetic genes and up-regulation of ABA biosynthetic genes
HDA705	Os08g0344100	LOC_Os08g25570	GA	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Delayed seed germination of HDA705 overexpression lines was associated with down-regulated expression of GA biosynthetic genes and up-regulation of ABA biosynthetic genes
HDA705	Os08g0344100	LOC_Os08g25570	GA biosynthetic	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Delayed seed germination of HDA705 overexpression lines was associated with down-regulated expression of GA biosynthetic genes and up-regulation of ABA biosynthetic genes
HDA705	Os08g0344100	LOC_Os08g25570	biotic stress	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
HDA705	Os08g0344100	LOC_Os08g25570	biotic stress	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Our findings demonstrate that HDA705 may play a role in regulating seed germination and the response to abiotic stresses in rice
HDA705	Os08g0344100	LOC_Os08g25570	ABA	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.
HDA705	Os08g0344100	LOC_Os08g25570	ABA	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Overexpression of HDA705 in rice decreased ABA and salt stress resistance during seed germination
HDA705	Os08g0344100	LOC_Os08g25570	ABA	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Delayed seed germination of HDA705 overexpression lines was associated with down-regulated expression of GA biosynthetic genes and up-regulation of ABA biosynthetic genes
HDA710	Os02g0215200	LOC_Os02g12380	callus	OsHDA710-mediated Histone Deacetylation Regulates Callus Formation of Rice Mature Embryo	Meanwhile, the transcriptional repressors OsARF18 and OsARF22 were upregulated in the callus of hda710
HDA710	Os02g0215200	LOC_Os02g12380	callus	OsHDA710-mediated Histone Deacetylation Regulates Callus Formation of Rice Mature Embryo	The ChIP-qPCR analysis demonstrated that the callus of hda710 exhibited enhanced histone H3 acetylation levels at the chromatin regions of OsARF18 and OsARF22
HDA710	Os02g0215200	LOC_Os02g12380	drought	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	HDA710 transcript accumulation levels were strongly induced by abiotic stresses including drought and salinity, as well as by the phytohormones jasmonic acid (JA) and abscisic acid (ABA)
HDA710	Os02g0215200	LOC_Os02g12380	salinity	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	hda710 knockout mutant plants showed enhanced salinity tolerance and reduced ABA sensitivity, whereas transgenic plants overexpressing HDA710 displayed the opposite phenotypes
HDA710	Os02g0215200	LOC_Os02g12380	salt	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice
HDA710	Os02g0215200	LOC_Os02g12380	tolerance	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice
HDA710	Os02g0215200	LOC_Os02g12380	tolerance	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	hda710 knockout mutant plants showed enhanced salinity tolerance and reduced ABA sensitivity, whereas transgenic plants overexpressing HDA710 displayed the opposite phenotypes
HDA710	Os02g0215200	LOC_Os02g12380	abiotic stress	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	HDA710 transcript accumulation levels were strongly induced by abiotic stresses including drought and salinity, as well as by the phytohormones jasmonic acid (JA) and abscisic acid (ABA)
HDA710	Os02g0215200	LOC_Os02g12380	ABA	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice
HDA710	Os02g0215200	LOC_Os02g12380	ABA	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	hda710 knockout mutant plants showed enhanced salinity tolerance and reduced ABA sensitivity, whereas transgenic plants overexpressing HDA710 displayed the opposite phenotypes
HDA710	Os02g0215200	LOC_Os02g12380	ABA	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	These expression differences corresponded with higher levels of histone H4 acetylation in gene promoter regions in hda710 compared with the wild type under ABA and salt-stress treatment
HDA710	Os02g0215200	LOC_Os02g12380	salt tolerance	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice
HDA710	Os02g0215200	LOC_Os02g12380	cytoplasm	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	We established that HDA710 localizes to both the nucleus and cytoplasm and is involved in regulating the acetylation of histone H3 and H4, specifically targeting H4K5 and H4K16 under normal conditions
HDA710	Os02g0215200	LOC_Os02g12380	nucleus	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	We established that HDA710 localizes to both the nucleus and cytoplasm and is involved in regulating the acetylation of histone H3 and H4, specifically targeting H4K5 and H4K16 under normal conditions
HDA710	Os02g0215200	LOC_Os02g12380	biotic stress	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	HDA710 transcript accumulation levels were strongly induced by abiotic stresses including drought and salinity, as well as by the phytohormones jasmonic acid (JA) and abscisic acid (ABA)
HDA710	Os02g0215200	LOC_Os02g12380	abscisic acid	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	HDA710 transcript accumulation levels were strongly induced by abiotic stresses including drought and salinity, as well as by the phytohormones jasmonic acid (JA) and abscisic acid (ABA)
HDA710	Os02g0215200	LOC_Os02g12380	jasmonic	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	HDA710 transcript accumulation levels were strongly induced by abiotic stresses including drought and salinity, as well as by the phytohormones jasmonic acid (JA) and abscisic acid (ABA)
HDA710	Os02g0215200	LOC_Os02g12380	jasmonic acid	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	HDA710 transcript accumulation levels were strongly induced by abiotic stresses including drought and salinity, as well as by the phytohormones jasmonic acid (JA) and abscisic acid (ABA)
HDA710	Os02g0215200	LOC_Os02g12380	ABA	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice
HDA710	Os02g0215200	LOC_Os02g12380	ABA	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	hda710 knockout mutant plants showed enhanced salinity tolerance and reduced ABA sensitivity, whereas transgenic plants overexpressing HDA710 displayed the opposite phenotypes
HDA710	Os02g0215200	LOC_Os02g12380	ABA	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice	These expression differences corresponded with higher levels of histone H4 acetylation in gene promoter regions in hda710 compared with the wild type under ABA and salt-stress treatment
HDAC10	Os12g0182700	LOC_Os12g08220	salt	Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis	Together, our findings reveal that salt-induced OsPRR73 expression confers salt tolerance by recruiting HDAC10 to transcriptionally repress OsHKT2;1, thus reducing cellular Na+ accumulation
HDAC10	Os12g0182700	LOC_Os12g08220	tolerance	Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis	Together, our findings reveal that salt-induced OsPRR73 expression confers salt tolerance by recruiting HDAC10 to transcriptionally repress OsHKT2;1, thus reducing cellular Na+ accumulation
HDAC10	Os12g0182700	LOC_Os12g08220	salt tolerance	Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis	Together, our findings reveal that salt-induced OsPRR73 expression confers salt tolerance by recruiting HDAC10 to transcriptionally repress OsHKT2;1, thus reducing cellular Na+ accumulation
HDR1	Os02g0793900	LOC_Os02g55080	growth	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.	The hdr1 mutant exhibits an early flowering phenotype under natural LD in a paddy field in Beijing, China (39°54'N, 116°23'E), as well as under LD but not SD in a growth chamber, indicating that HDR1 may functionally regulate flowering time via the photoperiod-dependent pathway
HDR1	Os02g0793900	LOC_Os02g55080	floral	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.	HDR1 encodes a nuclear protein that is most active in leaves and floral organs and exhibits a typical diurnal expression pattern
HDR1	Os02g0793900	LOC_Os02g55080	floral organ	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.	HDR1 encodes a nuclear protein that is most active in leaves and floral organs and exhibits a typical diurnal expression pattern
HDR1	Os02g0793900	LOC_Os02g55080	R protein	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.	HDR1 encodes a nuclear protein that is most active in leaves and floral organs and exhibits a typical diurnal expression pattern
HDR1	Os02g0793900	LOC_Os02g55080	flowering time	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.	The hdr1 mutant exhibits an early flowering phenotype under natural LD in a paddy field in Beijing, China (39°54'N, 116°23'E), as well as under LD but not SD in a growth chamber, indicating that HDR1 may functionally regulate flowering time via the photoperiod-dependent pathway
HDR1	Os02g0793900	LOC_Os02g55080	Kinase	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.
HEI10	Os02g0232100	LOC_Os02g13810	meiotic	The role of rice HEI10 in the formation of meiotic crossovers	Mice HEI10(mei4) mutant displays no obvious defect other than meiotic failure from an absence of chiasmata
HEI10	Os02g0232100	LOC_Os02g13810	meiotic	The role of rice HEI10 in the formation of meiotic crossovers	In this study, we characterize rice HEI10 by map-based cloning and explore its function during meiotic recombination
HEI10	Os02g0232100	LOC_Os02g13810	meiotic	The role of rice HEI10 in the formation of meiotic crossovers	HEI10 protein displays a highly dynamic localization on the meiotic chromosomes
HEI10	Os02g0232100	LOC_Os02g13810	meiotic	The role of rice HEI10 in the formation of meiotic crossovers	Together our results suggest that HEI10 is the homolog of budding yeast Zip3 and Caenorhabditis elegans ZHP-3, and may specifically promote class I CO formation through modification of various meiotic components
HEI10	Os02g0232100	LOC_Os02g13810	meiotic	The role of rice HEI10 in the formation of meiotic crossovers	The role of rice HEI10 in the formation of meiotic crossovers
HEI10	Os02g0232100	LOC_Os02g13810	meiotic	The role of OsMSH5 in crossover formation during rice meiosis	OsMSH5 can be loaded onto meiotic chromosomes in Oszip4, Osmer3, and hei10
HEI10	Os02g0232100	LOC_Os02g13810	cell cycle	The role of rice HEI10 in the formation of meiotic crossovers	HEI10 was first described in human as a RING domain-containing protein that regulates cell cycle and cell invasion
HEIP1|OsAGG1	Os01g0167700	LOC_Os01g07330	meiosis	HEIP1 regulates crossover formation during meiosis in rice.	HEIP1 regulates crossover formation during meiosis in rice.
HEIP1|OsAGG1	Os01g0167700	LOC_Os01g07330	meiotic	HEIP1 regulates crossover formation during meiosis in rice.	HEIP1 colocalizes with HEI10 in a dynamic fashion along the meiotic chromosomes and specially localizes onto crossover sites from late pachytene to diplotene
HEIP1|OsAGG1	Os01g0167700	LOC_Os01g07330	crossover	HEIP1 regulates crossover formation during meiosis in rice.	HEIP1 regulates crossover formation during meiosis in rice.
HEIP1|OsAGG1	Os01g0167700	LOC_Os01g07330	crossover	HEIP1 regulates crossover formation during meiosis in rice.	HEIP1 colocalizes with HEI10 in a dynamic fashion along the meiotic chromosomes and specially localizes onto crossover sites from late pachytene to diplotene
HEIP1|OsAGG1	Os01g0167700	LOC_Os01g07330	meiotic	The plant-specific gene ABERRANT GAMETOGENESIS 1 is essential for meiosis in rice.	Overall, our work showed that OsAGG1 is a novel and critical component for rice meiotic CO formation, thus expanding our understanding of meiotic progression
HEIP1|OsAGG1	Os01g0167700	LOC_Os01g07330	crossover	The plant-specific gene ABERRANT GAMETOGENESIS 1 is essential for meiosis in rice.	These results suggested that OsAGG1 played an important role in crossover (CO) formation
HGW	Os06g0160400	LOC_Os06g06530	lemma	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Analysis of hgw mutant phenotypes indicate that the hemizygous hgw mutation decreases latitudinal cell number in the lemma and palea, both composing the spikelet hull that is known to determine the size and shape of brown grain
HGW	Os06g0160400	LOC_Os06g06530	grain weight	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Here we report the isolation of a hemizygous mutation, heading and grain weight (hgw), which delays heading and reduces grain weight in rice
HGW	Os06g0160400	LOC_Os06g06530	grain weight	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Molecular cloning and characterization of the HGW gene showed that it encodes a novel plant-specific ubiquitin-associated (UBA) domain protein localized in the cytoplasm and nucleus, and functions as a key upstream regulator to promote expressions of heading date-and grain weight-related genes
HGW	Os06g0160400	LOC_Os06g06530	grain weight	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Moreover, co-expression analysis in rice and Arabidopsis indicated that HGW and its Arabidopsis homolog are co-expressed with genes encoding various components of ubiquitination machinery, implying a fundamental role for the ubiquitination pathway in heading date and grain weight control
HGW	Os06g0160400	LOC_Os06g06530	grain weight	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight
HGW	Os06g0160400	LOC_Os06g06530	spikelet	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Analysis of hgw mutant phenotypes indicate that the hemizygous hgw mutation decreases latitudinal cell number in the lemma and palea, both composing the spikelet hull that is known to determine the size and shape of brown grain
HGW	Os06g0160400	LOC_Os06g06530	palea	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Analysis of hgw mutant phenotypes indicate that the hemizygous hgw mutation decreases latitudinal cell number in the lemma and palea, both composing the spikelet hull that is known to determine the size and shape of brown grain
HGW	Os06g0160400	LOC_Os06g06530	heading date	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Molecular cloning and characterization of the HGW gene showed that it encodes a novel plant-specific ubiquitin-associated (UBA) domain protein localized in the cytoplasm and nucleus, and functions as a key upstream regulator to promote expressions of heading date-and grain weight-related genes
HGW	Os06g0160400	LOC_Os06g06530	heading date	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Moreover, co-expression analysis in rice and Arabidopsis indicated that HGW and its Arabidopsis homolog are co-expressed with genes encoding various components of ubiquitination machinery, implying a fundamental role for the ubiquitination pathway in heading date and grain weight control
HGW	Os06g0160400	LOC_Os06g06530	heading date	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight
HGW	Os06g0160400	LOC_Os06g06530	grain	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Here we report the isolation of a hemizygous mutation, heading and grain weight (hgw), which delays heading and reduces grain weight in rice
HGW	Os06g0160400	LOC_Os06g06530	grain	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Analysis of hgw mutant phenotypes indicate that the hemizygous hgw mutation decreases latitudinal cell number in the lemma and palea, both composing the spikelet hull that is known to determine the size and shape of brown grain
HGW	Os06g0160400	LOC_Os06g06530	grain	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Molecular cloning and characterization of the HGW gene showed that it encodes a novel plant-specific ubiquitin-associated (UBA) domain protein localized in the cytoplasm and nucleus, and functions as a key upstream regulator to promote expressions of heading date-and grain weight-related genes
HGW	Os06g0160400	LOC_Os06g06530	grain	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	Moreover, co-expression analysis in rice and Arabidopsis indicated that HGW and its Arabidopsis homolog are co-expressed with genes encoding various components of ubiquitination machinery, implying a fundamental role for the ubiquitination pathway in heading date and grain weight control
HGW	Os06g0160400	LOC_Os06g06530	grain	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight	The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight
HIS1	Os02g0280700	LOC_Os02g17940	resistance	A rice gene that confers broad-spectrum resistance to β-triketone herbicides.	Here we identify a rice gene, HIS1 (HPPD INHIBITOR SENSITIVE 1), that confers resistance to BBC and other β-triketone herbicides
HIS1	Os02g0280700	LOC_Os02g17940	resistance	A rice gene that confers broad-spectrum resistance to β-triketone herbicides.	Forced expression of HIS1 in Arabidopsis conferred resistance not only to BBC but also to four additional β-triketone herbicides
HIS1	Os02g0280700	LOC_Os02g17940	breeding	A rice gene that confers broad-spectrum resistance to β-triketone herbicides.	HIS1 may prove useful for breeding herbicide-resistant crops
HIS1	Os02g0280700	LOC_Os02g17940	resistance	Exploring Natural Allelic Variations of the Triketone Herbicide Resistance Gene HIS1 for Application in indica Rice and Particularly in Two-Line Hybrid Rice	Exploring Natural Allelic Variations of the Triketone Herbicide Resistance Gene HIS1 for Application in indica Rice and Particularly in Two-Line Hybrid Rice
HIS1	Os02g0280700	LOC_Os02g17940	resistance	Exploring Natural Allelic Variations of the Triketone Herbicide Resistance Gene HIS1 for Application in indica Rice and Particularly in Two-Line Hybrid Rice	Results: By analyzing haplotypes of the bTHs broad-spectrum resistance gene HIS1 and phenotypes for BBC in 493 major indica rice accessions in China, we identified a novel non-functional allelic variant of HIS1 in addition to the previously reported 28-bp deletion
HIS1	Os02g0280700	LOC_Os02g17940	seed	Exploring Natural Allelic Variations of the Triketone Herbicide Resistance Gene HIS1 for Application in indica Rice and Particularly in Two-Line Hybrid Rice	Finally, allelic variations of the HIS1 gene may also play an important role in the mechanized seed production of hybrid rice
HIS1	Os02g0280700	LOC_Os02g17940	sterile	Exploring Natural Allelic Variations of the Triketone Herbicide Resistance Gene HIS1 for Application in indica Rice and Particularly in Two-Line Hybrid Rice	In addition, due to natural allelic variations of the HIS1 gene in the sterile and restorer lines, some two-line hybrid sterile lines were sensitive to bTHs, and the corresponding restorers were resistant
HIS1	Os02g0280700	LOC_Os02g17940	resistant	Exploring Natural Allelic Variations of the Triketone Herbicide Resistance Gene HIS1 for Application in indica Rice and Particularly in Two-Line Hybrid Rice	In addition, due to natural allelic variations of the HIS1 gene in the sterile and restorer lines, some two-line hybrid sterile lines were sensitive to bTHs, and the corresponding restorers were resistant
HIS1	Os02g0280700	LOC_Os02g17940	herbicide resistance	Exploring Natural Allelic Variations of the Triketone Herbicide Resistance Gene HIS1 for Application in indica Rice and Particularly in Two-Line Hybrid Rice	Exploring Natural Allelic Variations of the Triketone Herbicide Resistance Gene HIS1 for Application in indica Rice and Particularly in Two-Line Hybrid Rice
HKT2	None	None	salt	Two types of HKT transporters with different properties of Na+ and K+ transport in Oryza sativa	We also isolated two cDNAs homologous to Ni-OsHKT1 from salt-tolerant indica rice, cv Pokkali (Po-OsHKT1, Po-OsHKT2)
HKT2	None	None	salt	Two types of HKT transporters with different properties of Na+ and K+ transport in Oryza sativa	These results suggest that two isoforms of HKT transporters, a Na+ transporter (OsHKT1) and a Na+- and K+-coupled transporter (OsHKT2), may act harmoniously in the salt tolerant indica rice
HKT2	None	None	transporter	Two types of HKT transporters with different properties of Na+ and K+ transport in Oryza sativa	These results suggest that two isoforms of HKT transporters, a Na+ transporter (OsHKT1) and a Na+- and K+-coupled transporter (OsHKT2), may act harmoniously in the salt tolerant indica rice
HKT3|OsHKT2;3	Os01g0532600	LOC_Os01g34850	transporter	K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions	The genetically tractable rice (Oryza sativa; background Nipponbare) possesses two predicted K(+)-transporting class II HKT transporter genes, OsHKT2;3 and OsHKT2;4
HL6|OsGL6	Os06g0657500	LOC_Os06g44750	domestication	Hairy Leaf 6, an AP2/ERF transcription factor, interacts with OsWOX3B and regulates trichome formation in rice.	Population genetic analysis indicated that HL6 was under negative selection during rice domestication
HL6|OsGL6	Os06g0657500	LOC_Os06g44750	Kinase	OsGL6, a conserved AP2 domain protein, promotes leaf trichome initiation in rice.	We found that OsGL6 interacted with serine/threonine protein kinase OSK3 (OSK3) or COP9 signalosome complex subunit 5a (CSN5) in yeast
HL6|OsGL6	Os06g0657500	LOC_Os06g44750	protein kinase	OsGL6, a conserved AP2 domain protein, promotes leaf trichome initiation in rice.	We found that OsGL6 interacted with serine/threonine protein kinase OSK3 (OSK3) or COP9 signalosome complex subunit 5a (CSN5) in yeast
HLL	Os10g0466700	LOC_Os10g32920	growth	The Arabidopsis HUELLENLOS Gene, Which Is Essential for Normal Ovule Development, Encodes a Mitochondrial Ribosomal Protein	The HUELLENLOS (HLL) gene participates in patterning and growth of the Arabidopsis ovule
HLL	Os10g0466700	LOC_Os10g32920	mitochondria	The Arabidopsis HUELLENLOS Gene, Which Is Essential for Normal Ovule Development, Encodes a Mitochondrial Ribosomal Protein	HLL and HLP fusions to green fluorescent protein were localized to mitochondria
HLL	Os10g0466700	LOC_Os10g32920	mitochondria	The Arabidopsis HUELLENLOS Gene, Which Is Essential for Normal Ovule Development, Encodes a Mitochondrial Ribosomal Protein	We conclude that HLL and HLP encode L14 subunits of mitochondrial ribosomes
HMG2	Os09g0492700	LOC_Os09g31970	leaf	Molecular characterization of Hmg2 gene encoding a 3-hydroxy-methylglutaryl-CoA reductase in rice	Rice Hmg2 transcripts were constitutively detected in all parts of the rice plant, except in lamina and their levels were high particularly in the leaf part of the dark-grown seedlings and mature flowers
HMG2	Os09g0492700	LOC_Os09g31970	seedling	Molecular characterization of Hmg2 gene encoding a 3-hydroxy-methylglutaryl-CoA reductase in rice	Rice Hmg2 transcripts were constitutively detected in all parts of the rice plant, except in lamina and their levels were high particularly in the leaf part of the dark-grown seedlings and mature flowers
HMG2	Os09g0492700	LOC_Os09g31970	seedling	Molecular characterization of Hmg2 gene encoding a 3-hydroxy-methylglutaryl-CoA reductase in rice	Our result showed that mRNA levels of rice Hmg2 were strongly induced in seedlings and influorescence in the early development stage
HMG2	Os09g0492700	LOC_Os09g31970	lamina	Molecular characterization of Hmg2 gene encoding a 3-hydroxy-methylglutaryl-CoA reductase in rice	Rice Hmg2 transcripts were constitutively detected in all parts of the rice plant, except in lamina and their levels were high particularly in the leaf part of the dark-grown seedlings and mature flowers
HMG2	Os09g0492700	LOC_Os09g31970	flower	Molecular characterization of Hmg2 gene encoding a 3-hydroxy-methylglutaryl-CoA reductase in rice	Rice Hmg2 transcripts were constitutively detected in all parts of the rice plant, except in lamina and their levels were high particularly in the leaf part of the dark-grown seedlings and mature flowers
HN1L	Os04g0455600	LOC_Os04g38310	silicon	Cloning, expression and subcellular localization of HN1 and HN1L genes, as well as characterization of their orthologs, defining an evolutionarily conserved gene family	Silicon analyses of the 14 orthologous proteins of HN1 and 16 orthologous proteins of HN1L revealed that they share great conservation in vertebrate
HOS59	Os06g0646600	LOC_Os06g43860	transcription factor	KNOX II transcription factor HOS59 functions in regulating rice grain size.	KNOX II transcription factor HOS59 functions in regulating rice grain size.
HOS59	Os06g0646600	LOC_Os06g43860	grain	KNOX II transcription factor HOS59 functions in regulating rice grain size.	KNOX II transcription factor HOS59 functions in regulating rice grain size.
HOS59	Os06g0646600	LOC_Os06g43860	grain	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 Meanwhile, our IP-MS datasets showed that HOS59 was closely associated with BELL family proteins, some grain size regulators (OsSPL13, OsSPL16, OsSPL18, SLG, etc
HOS59	Os06g0646600	LOC_Os06g43860	grain	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 Compared with wild-type plants, the hos59 mutants have longer grains and increased glume cell length, a loose plant architecture, and drooping leaves, while the overexpression lines showed smaller grain size, erect leaves, and lower plant height
HOS59	Os06g0646600	LOC_Os06g43860	grain	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 The qRT-PCR results showed that mutation of the HOS59 gene led to upregulation of some grain size-related genes such as OsSPL13, OsSPL18, and PGL2
HOS59	Os06g0646600	LOC_Os06g43860	grain	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 In summary, our results indicate that HOS59 may be a repressor of the downstream target genes, negatively regulating glume cell length, rice grain size, plant architecture, etc
HOS59	Os06g0646600	LOC_Os06g43860	grain size	KNOX II transcription factor HOS59 functions in regulating rice grain size.	KNOX II transcription factor HOS59 functions in regulating rice grain size.
HOS59	Os06g0646600	LOC_Os06g43860	grain size	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 Meanwhile, our IP-MS datasets showed that HOS59 was closely associated with BELL family proteins, some grain size regulators (OsSPL13, OsSPL16, OsSPL18, SLG, etc
HOS59	Os06g0646600	LOC_Os06g43860	grain size	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 Compared with wild-type plants, the hos59 mutants have longer grains and increased glume cell length, a loose plant architecture, and drooping leaves, while the overexpression lines showed smaller grain size, erect leaves, and lower plant height
HOS59	Os06g0646600	LOC_Os06g43860	grain size	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 The qRT-PCR results showed that mutation of the HOS59 gene led to upregulation of some grain size-related genes such as OsSPL13, OsSPL18, and PGL2
HOS59	Os06g0646600	LOC_Os06g43860	grain size	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 In summary, our results indicate that HOS59 may be a repressor of the downstream target genes, negatively regulating glume cell length, rice grain size, plant architecture, etc
HOS59	Os06g0646600	LOC_Os06g43860	height	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 Compared with wild-type plants, the hos59 mutants have longer grains and increased glume cell length, a loose plant architecture, and drooping leaves, while the overexpression lines showed smaller grain size, erect leaves, and lower plant height
HOS59	Os06g0646600	LOC_Os06g43860	plant height	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 Compared with wild-type plants, the hos59 mutants have longer grains and increased glume cell length, a loose plant architecture, and drooping leaves, while the overexpression lines showed smaller grain size, erect leaves, and lower plant height
HOS59	Os06g0646600	LOC_Os06g43860	erect	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 Compared with wild-type plants, the hos59 mutants have longer grains and increased glume cell length, a loose plant architecture, and drooping leaves, while the overexpression lines showed smaller grain size, erect leaves, and lower plant height
HOS59	Os06g0646600	LOC_Os06g43860	plant architecture	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 Compared with wild-type plants, the hos59 mutants have longer grains and increased glume cell length, a loose plant architecture, and drooping leaves, while the overexpression lines showed smaller grain size, erect leaves, and lower plant height
HOS59	Os06g0646600	LOC_Os06g43860	plant architecture	KNOX II transcription factor HOS59 functions in regulating rice grain size.	 In summary, our results indicate that HOS59 may be a repressor of the downstream target genes, negatively regulating glume cell length, rice grain size, plant architecture, etc
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	panicle	Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.	Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	panicle	Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.	In this study, we identified a dominant panicle enclosure mutant regulator of eui1 (ree1-D), which is caused by the activation of a homeodomain-leucine zipper transcription factor HOX12
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	panicle	Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.	Diminished HOX12 expression by RNA interference enhances the panicle exsertion, mimicking the eui1 phenotype
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	panicle	Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.	These results reveal a novel regulatory module that HOX12 acts directly through EUI1 to regulate panicle exsertion in rice
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	transcription factor	Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.	In this study, we identified a dominant panicle enclosure mutant regulator of eui1 (ree1-D), which is caused by the activation of a homeodomain-leucine zipper transcription factor HOX12
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	ga	Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.	Quantification of GA levels in the uppermost internodes revealed that the HOX12 knockdown plants contain higher levels of the major biologically active GAs (such as GA1 and GA4) than these in the wild type
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	GA	Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.	Quantification of GA levels in the uppermost internodes revealed that the HOX12 knockdown plants contain higher levels of the major biologically active GAs (such as GA1 and GA4) than these in the wild type
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	transcription factor	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	panicle	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Overexpression of Oshox12 and Oshox14 in rice resulted in reduced panicle length and a dwarf phenotype
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	panicle	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Our findings suggest that Oshox12 and Oshox14 may be involved in the regulation of panicle development
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	development	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Our findings suggest that Oshox12 and Oshox14 may be involved in the regulation of panicle development
HOX12|Oshox12	Os03g0198600	LOC_Os03g10210	dwarf	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Overexpression of Oshox12 and Oshox14 in rice resulted in reduced panicle length and a dwarf phenotype
HPA1	Os03g0102100	LOC_Os03g01222	leaf	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	In a further feeding assay with exogenous glutathione (GSH), a non-enzymatic antioxidant that consumes H2O2, the H2O2 accumulation and leaf senescence phenotypes of hpa1 were obviously compensated
HPA1	Os03g0102100	LOC_Os03g01222	leaf	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	Taken together, our findings suggest that the accumulation of H2O2 in hpa1 may be mediated by an altered folate status and redox homeostasis, subsequently triggering leaf senescence
HPA1	Os03g0102100	LOC_Os03g01222	leaf senescence	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	In a further feeding assay with exogenous glutathione (GSH), a non-enzymatic antioxidant that consumes H2O2, the H2O2 accumulation and leaf senescence phenotypes of hpa1 were obviously compensated
HPA1	Os03g0102100	LOC_Os03g01222	leaf senescence	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	Taken together, our findings suggest that the accumulation of H2O2 in hpa1 may be mediated by an altered folate status and redox homeostasis, subsequently triggering leaf senescence
HPA1	Os03g0102100	LOC_Os03g01222	senescence	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	In a further feeding assay with exogenous glutathione (GSH), a non-enzymatic antioxidant that consumes H2O2, the H2O2 accumulation and leaf senescence phenotypes of hpa1 were obviously compensated
HPA1	Os03g0102100	LOC_Os03g01222	senescence	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	Taken together, our findings suggest that the accumulation of H2O2 in hpa1 may be mediated by an altered folate status and redox homeostasis, subsequently triggering leaf senescence
HPA1	Os03g0102100	LOC_Os03g01222	mitochondria	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	Proteomics and enzyme activity analyses further revealed that mitochondria oxidative phosphorylation complex I and complex V were differentially expressed in hpa1, which was consistent with the H2O2 accumulation in hpa1
HPA1	Os03g0102100	LOC_Os03g01222	map-based cloning	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	Map-based cloning revealed that HPA1 encodes a tetrahydrofolate deformylase, and its deficiency led to the accumulation of tetrahydrofolate, 5-formyl tetrahydrofolate and 10-formyl tetrahydrofolate, in contrast, a decrease in 5,10-methenyl-tetrahydrofolate
HPA1	Os03g0102100	LOC_Os03g01222	oxidative	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	Proteomics and enzyme activity analyses further revealed that mitochondria oxidative phosphorylation complex I and complex V were differentially expressed in hpa1, which was consistent with the H2O2 accumulation in hpa1
HPA1	Os03g0102100	LOC_Os03g01222	redox homeostasis	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice	Taken together, our findings suggest that the accumulation of H2O2 in hpa1 may be mediated by an altered folate status and redox homeostasis, subsequently triggering leaf senescence
HSA1a	Os12g0589400	LOC_Os12g39880	hybrid sterility	Two tightly linked genes at the hsa1 locus cause both F1 and F2 hybrid sterility in rice	Two tightly linked genes at the hsa1 locus cause both F1 and F2 hybrid sterility in rice
HSA1b	None	LOC_Os12g39920	hybrid sterility	Two tightly linked genes at the hsa1 locus cause both F1 and F2 hybrid sterility in rice	Two tightly linked genes at the hsa1 locus cause both F1 and F2 hybrid sterility in rice
HSA32	Os06g0682900	LOC_Os06g46900	seedling	A positive feedback loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties	Our results showed that a positive feedback loop formed by two heat-inducible genes, HEAT SHOCK PROTEIN101 (HSP101) and HEAT STRESS-ASSOCIATED 32-KD PROTEIN (HSA32), at the posttranscriptional level prolongs the effect of heat acclimation in rice seedlings
HSA32	Os06g0682900	LOC_Os06g46900	seed	A positive feedback loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties	Our results showed that a positive feedback loop formed by two heat-inducible genes, HEAT SHOCK PROTEIN101 (HSP101) and HEAT STRESS-ASSOCIATED 32-KD PROTEIN (HSA32), at the posttranscriptional level prolongs the effect of heat acclimation in rice seedlings
HSA32	Os06g0682900	LOC_Os06g46900	seed	A positive feedback loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties	The interplay between HSP101 and HSA32 also affects basal thermotolerance of rice seeds
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	seedling	A positive feedback loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties	Our results showed that a positive feedback loop formed by two heat-inducible genes, HEAT SHOCK PROTEIN101 (HSP101) and HEAT STRESS-ASSOCIATED 32-KD PROTEIN (HSA32), at the posttranscriptional level prolongs the effect of heat acclimation in rice seedlings
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	arsenite	Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types	Rice hsp101 cDNA expression in hsp104 deficient yeast also caused recovery in tolerance against arsenite
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	seed	A positive feedback loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties	Our results showed that a positive feedback loop formed by two heat-inducible genes, HEAT SHOCK PROTEIN101 (HSP101) and HEAT STRESS-ASSOCIATED 32-KD PROTEIN (HSA32), at the posttranscriptional level prolongs the effect of heat acclimation in rice seedlings
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	seed	A positive feedback loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties	The interplay between HSP101 and HSA32 also affects basal thermotolerance of rice seeds
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	seedling	Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types	In the temperature regime tested, 45 degrees C treatment to intact rice seedlings for 2 h showed maximal levels of hsp101 mRNA
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	flower	OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.)	Transgenic rice plants produced with 2 kb OsClpB-cyt promoter driving Gus reporter gene showed heat- and metal-regulated Gus expression in vegetative tissues and constitutive Gus expression in calli, flowering tissues, and embryonal half of seeds
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	seed	Genome-wide analysis of rice ClpB/HSP100, ClpC and ClpD genes	OsClpB-cyt transcript is shown to be enriched at milk and dough stages of seed development
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	seedling	OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.)	Rice seedlings regenerated with OsClpB-cyt promoter fragment with deletion of its canonical heat shock element sequence (HSE(-273 to -280)) showed not only heat shock inducibility of Gus transcript/protein but also constitutive expression of Gus in vegetative tissues
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	vegetative	OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.)	Transgenic rice plants produced with 2 kb OsClpB-cyt promoter driving Gus reporter gene showed heat- and metal-regulated Gus expression in vegetative tissues and constitutive Gus expression in calli, flowering tissues, and embryonal half of seeds
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	vegetative	OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.)	Rice seedlings regenerated with OsClpB-cyt promoter fragment with deletion of its canonical heat shock element sequence (HSE(-273 to -280)) showed not only heat shock inducibility of Gus transcript/protein but also constitutive expression of Gus in vegetative tissues
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	chloroplast	Complexity of rice Hsp100 gene family: lessons from rice genome sequence data	While Os05g44340 encodes cytoplasmic Hsp100 protein, those encoded by the other four genes are predicted to have chloroplast transit peptides
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	seed	OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.)	Transgenic rice plants produced with 2 kb OsClpB-cyt promoter driving Gus reporter gene showed heat- and metal-regulated Gus expression in vegetative tissues and constitutive Gus expression in calli, flowering tissues, and embryonal half of seeds
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	seed	OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.)	Rice seedlings regenerated with OsClpB-cyt promoter fragment with deletion of its canonical heat shock element sequence (HSE(-273 to -280)) showed not only heat shock inducibility of Gus transcript/protein but also constitutive expression of Gus in vegetative tissues
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	seed development	Genome-wide analysis of rice ClpB/HSP100, ClpC and ClpD genes	OsClpB-cyt transcript is shown to be enriched at milk and dough stages of seed development
HSP101|OsClpB-cyt|HSP100	Os05g0519700	LOC_Os05g44340	temperature	Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types	In the temperature regime tested, 45 degrees C treatment to intact rice seedlings for 2 h showed maximal levels of hsp101 mRNA
HSP40	Os02g0100300	LOC_Os02g01030	cytoplasm	Glucosidase II β-subunit, a novel substrate for caspase-3-like activity in rice, plays as a molecular switch between autophagy and programmed cell death.	Gas2 and GRP94 were localized to the ER, while HSP40 localized to the cytoplasm
HSP70	Os11g0703900	LOC_Os11g47760	salt	Heat-inducible rice hsp82 and hsp70 are not always co-regulated	By contrast, we found that during heat stress the expression of hsp70 correlates well with increases in internal ion concentrations, and can also be induced by excess salt or ethanol at normal growth temperatures
HSP70	Os11g0703900	LOC_Os11g47760	temperature	Heat-inducible rice hsp82 and hsp70 are not always co-regulated	By contrast, we found that during heat stress the expression of hsp70 correlates well with increases in internal ion concentrations, and can also be induced by excess salt or ethanol at normal growth temperatures
HSP70	Os11g0703900	LOC_Os11g47760	growth	Heat-inducible rice hsp82 and hsp70 are not always co-regulated	By contrast, we found that during heat stress the expression of hsp70 correlates well with increases in internal ion concentrations, and can also be induced by excess salt or ethanol at normal growth temperatures
HSP70	Os11g0703900	LOC_Os11g47760	seedling	Mechanisms of plant adaptation/memory in rice seedlings under arsenic and heat stress: expression of heat-shock protein gene HSP70	PRINCIPAL RESULTS: Our studies reveal that HSP70, a cellular chaperone gene, is over-expressed at the mRNA and protein levels when rice seedlings are exposed to As and heat
HSP70	Os11g0703900	LOC_Os11g47760	seedling	Mechanisms of plant adaptation/memory in rice seedlings under arsenic and heat stress: expression of heat-shock protein gene HSP70	Mechanisms of plant adaptation/memory in rice seedlings under arsenic and heat stress: expression of heat-shock protein gene HSP70
Hsp90|rHsp90|OSGrp94	Os06g0716700	LOC_Os06g50300	abiotic stress	rHsp90 gene expression in response to several environmental stresses in rice (Oryza sativa L.)	Further studies showed that rHsp90 mRNA accumulated following exposure to several abiotic stresses, including salts (NaCl, NaHCO(3) and Na(2)CO(3)), desiccation (using polyethylene glycol), high pH (8
Hsp90|rHsp90|OSGrp94	Os06g0716700	LOC_Os06g50300	seedling	rHsp90 gene expression in response to several environmental stresses in rice (Oryza sativa L.)	Yeast (Saccharomyces cerevisiae) over-expressing rHsp90 exhibited greater tolerance to NaCl, Na(2)CO(3) and NaHCO(3) and tobacco seedlings over-expressing rHsp90 could tolerate salt concentrations as high as 200 mM NaCl, whereas untransformed control seedlings couldn't
Hsp90|rHsp90|OSGrp94	Os06g0716700	LOC_Os06g50300	disease resistance	RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice	RAR1 (for required for Mla12 resistance) and HSP90 (a heat shock protein 90 kD) are important components of R gene-mediated disease resistance, and their function is conserved in several plant species
Hsp90|rHsp90|OSGrp94	Os06g0716700	LOC_Os06g50300	ethylene	rHsp90 gene expression in response to several environmental stresses in rice (Oryza sativa L.)	Further studies showed that rHsp90 mRNA accumulated following exposure to several abiotic stresses, including salts (NaCl, NaHCO(3) and Na(2)CO(3)), desiccation (using polyethylene glycol), high pH (8
Hsp90|rHsp90|OSGrp94	Os06g0716700	LOC_Os06g50300	salt	rHsp90 gene expression in response to several environmental stresses in rice (Oryza sativa L.)	Further studies showed that rHsp90 mRNA accumulated following exposure to several abiotic stresses, including salts (NaCl, NaHCO(3) and Na(2)CO(3)), desiccation (using polyethylene glycol), high pH (8
Hsp90|rHsp90|OSGrp94	Os06g0716700	LOC_Os06g50300	salt	rHsp90 gene expression in response to several environmental stresses in rice (Oryza sativa L.)	Yeast (Saccharomyces cerevisiae) over-expressing rHsp90 exhibited greater tolerance to NaCl, Na(2)CO(3) and NaHCO(3) and tobacco seedlings over-expressing rHsp90 could tolerate salt concentrations as high as 200 mM NaCl, whereas untransformed control seedlings couldn't
Hsp90|rHsp90|OSGrp94	Os06g0716700	LOC_Os06g50300	disease	RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice	RAR1 (for required for Mla12 resistance) and HSP90 (a heat shock protein 90 kD) are important components of R gene-mediated disease resistance, and their function is conserved in several plant species
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tillering	Characterizations and fine mapping of a mutant gene for high tillering and dwarf in rice (Oryza sativa L.)	The genetic analysis of the htd-1 mutant indicated that the phenotypes of high tillering and dwarf were controlled by a recessive gene, termed htd1
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	root	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	The HTD1 gene is expressed in both shoot and root tissues
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	strigolactone	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	Loss of function of HTD2 resulted in a significantly increased expression of HTD1, D10 and D3, which were involved in the strigolactone biosynthetic pathway
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	shoot	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	The HTD1 gene is expressed in both shoot and root tissues
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	vascular bundle	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	By evaluating Pro(HTD1):GUS expression, we found that the HTD1 gene is mainly expressed in vascular bundle tissues throughout the plant
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tiller	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	The HIGH-TILLERING DWARF1 (HTD1) gene encodes an ortholog of Arabidopsis MAX3
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tiller	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	Complementation analyses for HTD1 confirm that the defect in HTD1 is responsible for both high-tillering and dwarf phenotypes in the htd1 mutant
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tiller	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	Auxin induction of HTD1 expression suggests that auxin may regulate rice tillering partly through upregulation of HTD1 gene transcription
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tiller	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	Restoration of dwarf phenotype after the removal of axillary buds indicates that the dwarfism of the htd1 mutant may be a consequence of excessive tiller production
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tillering	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	auxin	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	Auxin induction of HTD1 expression suggests that auxin may regulate rice tillering partly through upregulation of HTD1 gene transcription
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	dwarf	Characterizations and fine mapping of a mutant gene for high tillering and dwarf in rice (Oryza sativa L.)	The genetic analysis of the htd-1 mutant indicated that the phenotypes of high tillering and dwarf were controlled by a recessive gene, termed htd1
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tiller	Characterizations and fine mapping of a mutant gene for high tillering and dwarf in rice (Oryza sativa L.)	The genetic analysis of the htd-1 mutant indicated that the phenotypes of high tillering and dwarf were controlled by a recessive gene, termed htd1
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tillering	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	The HIGH-TILLERING DWARF1 (HTD1) gene encodes an ortholog of Arabidopsis MAX3
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tillering	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	Complementation analyses for HTD1 confirm that the defect in HTD1 is responsible for both high-tillering and dwarf phenotypes in the htd1 mutant
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tillering	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	Auxin induction of HTD1 expression suggests that auxin may regulate rice tillering partly through upregulation of HTD1 gene transcription
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	dwarf	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	The HIGH-TILLERING DWARF1 (HTD1) gene encodes an ortholog of Arabidopsis MAX3
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	dwarf	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	Complementation analyses for HTD1 confirm that the defect in HTD1 is responsible for both high-tillering and dwarf phenotypes in the htd1 mutant
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	dwarf	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds	Restoration of dwarf phenotype after the removal of axillary buds indicates that the dwarfism of the htd1 mutant may be a consequence of excessive tiller production
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	dwarf	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	cell death	Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death	Moreover, the mRNA levels of D3, HTD1 and D10, which are orthologs of Arabidopsis MAX2/ORE9, MAX3 and MAX4, respectively, increased during cell death
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	branching	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tiller	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	dwarf	A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.	A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tillering	A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.	A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	tillering	Knocking out of carotenoid catabolic genes in rice fails to boost carotenoid accumulation, but reveals a mutation in strigolactone biosynthesis.	Targeted mutations in five carotenoid catabolism genes failed to boost carotenoid accumulation in rice seeds, but produced dwarf and high tillering mutants when OsCCD7 gene was knocked out
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	seed	Knocking out of carotenoid catabolic genes in rice fails to boost carotenoid accumulation, but reveals a mutation in strigolactone biosynthesis.	However, transgenic plants with homozygous or bi-allelic mutations to the OsCCD7 gene were extremely dwarfish with more tillers and lower seed setting than other transgenic or nontransgenic plants
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	dwarf	Knocking out of carotenoid catabolic genes in rice fails to boost carotenoid accumulation, but reveals a mutation in strigolactone biosynthesis.	Targeted mutations in five carotenoid catabolism genes failed to boost carotenoid accumulation in rice seeds, but produced dwarf and high tillering mutants when OsCCD7 gene was knocked out
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	architecture	A Strigolactone Biosynthesis Gene Contributed to the Green Revolution in Rice.	We found that the HTD1 gene had been widely utilized and co-selected with Semidwarf 1 (SD1), both contributing to the improvement of plant architecture in modern rice varieties since the Green Revolution in the 1960s
HTD1|OsCCD7|D17	Os04g0550600	LOC_Os04g46470	plant architecture	A Strigolactone Biosynthesis Gene Contributed to the Green Revolution in Rice.	We found that the HTD1 gene had been widely utilized and co-selected with Semidwarf 1 (SD1), both contributing to the improvement of plant architecture in modern rice varieties since the Green Revolution in the 1960s
HTD12	Os12g0405200	LOC_Os12g21710	root	HIGH-TILLERING AND DWARF 12 regulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice	In addition, compared to the wild type, htd12 had significantly lower levels of ent-2'-epi-5-deoxystrigol (epi-5DS), a native strigolactone (SL), in both roots and root exudates, resulting in an obvious increase in tiller number and decrease in plant height
HTD12	Os12g0405200	LOC_Os12g21710	tiller	HIGH-TILLERING AND DWARF 12 regulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice	In addition, compared to the wild type, htd12 had significantly lower levels of ent-2'-epi-5-deoxystrigol (epi-5DS), a native strigolactone (SL), in both roots and root exudates, resulting in an obvious increase in tiller number and decrease in plant height
HTD12	Os12g0405200	LOC_Os12g21710	photosynthesis	HIGH-TILLERING AND DWARF 12 regulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice	Sequence analysis showed that a single nucleotide transition from guanine (G) to adenine (A) in the 3' acceptor site between the 1 st intron and 2 nd exon of HTD12 alters its mRNA splicing in htd12 plants, resulting in a 49-amino acid deletion that affects carotenoid biosynthesis and photosynthesis in this mutant
HTD12	Os12g0405200	LOC_Os12g21710	dwarf	HIGH-TILLERING AND DWARF 12 regulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice	Here, we identified the high-tillering and dwarf 12 (htd12) mutant and analyzed the effects of the HTD12 mutation on these important factors
HTD12	Os12g0405200	LOC_Os12g21710	height	HIGH-TILLERING AND DWARF 12 regulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice	In addition, compared to the wild type, htd12 had significantly lower levels of ent-2'-epi-5-deoxystrigol (epi-5DS), a native strigolactone (SL), in both roots and root exudates, resulting in an obvious increase in tiller number and decrease in plant height
HTD12	Os12g0405200	LOC_Os12g21710	plant height	HIGH-TILLERING AND DWARF 12 regulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice	In addition, compared to the wild type, htd12 had significantly lower levels of ent-2'-epi-5-deoxystrigol (epi-5DS), a native strigolactone (SL), in both roots and root exudates, resulting in an obvious increase in tiller number and decrease in plant height
HTD12	Os12g0405200	LOC_Os12g21710	strigolactone	HIGH-TILLERING AND DWARF 12 regulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice	In addition, compared to the wild type, htd12 had significantly lower levels of ent-2'-epi-5-deoxystrigol (epi-5DS), a native strigolactone (SL), in both roots and root exudates, resulting in an obvious increase in tiller number and decrease in plant height
HTD12	Os12g0405200	LOC_Os12g21710	tiller number	HIGH-TILLERING AND DWARF 12 regulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice	In addition, compared to the wild type, htd12 had significantly lower levels of ent-2'-epi-5-deoxystrigol (epi-5DS), a native strigolactone (SL), in both roots and root exudates, resulting in an obvious increase in tiller number and decrease in plant height
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant	We characterized a tillering dwarf mutant d88 derived from Oryza sativa ssp
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant	A reduction in number and size of parenchyma cells around stem marrow cavity as well as a delay in the elongation of parenchyma cells caused slender tillers and dwarfism in the d88 mutant
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Furthermore, osmads57-1 was insensitive to strigolactone treatment to inhibit axillary bud outgrowth, and OsMADS57's function in tillering was dependent on D14
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	height	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	The d14 mutant exhibits increased shoot branch-ing with reduced plant height like the previously characterized strigolactone-deficient and -insensitive mutants d10 and d3, respectively
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	Here, we provide evidence that DWARF14 (D14) inhibits rice tillering and may act as a new compo-nent of the strigolactone-dependent branching inhibition pathway
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	Here, we identified a rice mutant htd2 from one of the 15,000 transgenic rice lines, which is characterized by a high tillering and dwarf phenotype
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	leaf	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	HTD2 transcripts were expressed mainly in leaf
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	branching	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	growth	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Here we report that OsMADS57 interacts with OsTB1 (TEOSINTE BRANCHED1) and targets D14 (Dwarf14) to control the outgrowth of axillary buds in rice
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	growth	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Furthermore, osmads57-1 was insensitive to strigolactone treatment to inhibit axillary bud outgrowth, and OsMADS57's function in tillering was dependent on D14
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tillering	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	DWARF 53 acts as a repressor of strigolactone signalling in rice	SL signalling requires the hormone-dependent interaction of DWARF 14 (D14), a probable candidate SL receptor, with DWARF 3 (D3), an F-box component of the Skp-Cullin-F-box (SCF) E3 ubiquitin ligase complex
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tillering	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Furthermore, osmads57-1 was insensitive to strigolactone treatment to inhibit axillary bud outgrowth, and OsMADS57's function in tillering was dependent on D14
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tillering	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Therefore, OsMIR444a-regulated OsMADS57, together with OsTB1, target D14 to control tillering
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	stem	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant	A reduction in number and size of parenchyma cells around stem marrow cavity as well as a delay in the elongation of parenchyma cells caused slender tillers and dwarfism in the d88 mutant
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	branching	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	Here, we provide evidence that DWARF14 (D14) inhibits rice tillering and may act as a new compo-nent of the strigolactone-dependent branching inhibition pathway
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	branching	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	However, unlike with d10, the d14 branching phenotype could not be rescued by exogenous strigolactones
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant	We characterized a tillering dwarf mutant d88 derived from Oryza sativa ssp
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant	A reduction in number and size of parenchyma cells around stem marrow cavity as well as a delay in the elongation of parenchyma cells caused slender tillers and dwarfism in the d88 mutant
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant	The potential relationship between the tiller formation associated genes and D88 is discussed and future identification of the substrate for D88 may lead to the characterization of new pathways regulating plant development
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tillering	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	Here, we identified a rice mutant htd2 from one of the 15,000 transgenic rice lines, which is characterized by a high tillering and dwarf phenotype
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	Here, we provide evidence that DWARF14 (D14) inhibits rice tillering and may act as a new compo-nent of the strigolactone-dependent branching inhibition pathway
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	The d14 mutant exhibits increased shoot branch-ing with reduced plant height like the previously characterized strigolactone-deficient and -insensitive mutants d10 and d3, respectively
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	However, unlike with d10, the d14 branching phenotype could not be rescued by exogenous strigolactones
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	We propose that D14 functions downstream of strigolactone synthesis, as a component of hormone signaling or as an enzyme that participates in the conversion of strigolactones to the bioactive form
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	resistant	DWARF 53 acts as a repressor of strigolactone signalling in rice	Treatments with GR24, a synthetic SL analogue, cause D53 degradation via the proteasome in a manner that requires D14 and the SCF(D3) ubiquitin ligase, whereas the dominant form of D53 is resistant to SL-mediated degradation
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	Here, we provide evidence that DWARF14 (D14) inhibits rice tillering and may act as a new compo-nent of the strigolactone-dependent branching inhibition pathway
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tillering	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	Here, we provide evidence that DWARF14 (D14) inhibits rice tillering and may act as a new compo-nent of the strigolactone-dependent branching inhibition pathway
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	shoot	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	The d14 mutant exhibits increased shoot branch-ing with reduced plant height like the previously characterized strigolactone-deficient and -insensitive mutants d10 and d3, respectively
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	Moreover, D10 expression is upregulated in six branching mutants, d3, d10, d14, d17, d27 and high tillering dwarf (htd1)
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	Here, we identified a rice mutant htd2 from one of the 15,000 transgenic rice lines, which is characterized by a high tillering and dwarf phenotype
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	The results suggest that the HTD2 gene could negatively regulate tiller bud outgrowth by the strigolactone pathway
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tillering	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant	We characterized a tillering dwarf mutant d88 derived from Oryza sativa ssp
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	growth	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant	D88, thus, represents a new category of genes that regulates cell growth and organ development and consequently plant architecture
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	growth	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Here we report that OsMADS57 interacts with OsTB1 (TEOSINTE BRANCHED1) and targets D14 (Dwarf14) to control the outgrowth of axillary buds in rice
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Furthermore, osmads57-1 was insensitive to strigolactone treatment to inhibit axillary bud outgrowth, and OsMADS57's function in tillering was dependent on D14
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Therefore, OsMIR444a-regulated OsMADS57, together with OsTB1, target D14 to control tillering
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	Loss of function of HTD2 resulted in a significantly increased expression of HTD1, D10 and D3, which were involved in the strigolactone biosynthetic pathway
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	The results suggest that the HTD2 gene could negatively regulate tiller bud outgrowth by the strigolactone pathway
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	growth	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	The results suggest that the HTD2 gene could negatively regulate tiller bud outgrowth by the strigolactone pathway
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	growth	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice	Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	The D53 gene product shares predicted features with the class I Clp ATPase proteins and can form a complex with the alpha/beta hydrolase protein DWARF 14 (D14) and the F-box protein DWARF 3 (D3), two previously identified signalling components potentially responsible for SL perception
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	architecture	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant	D88, thus, represents a new category of genes that regulates cell growth and organ development and consequently plant architecture
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	growth	D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling	We demonstrate that, in a D14- and D3-dependent manner, SLs induce D53 degradation by the proteasome and abrogate its activity in promoting axillary bud outgrowth
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	phloem	Phloem transport of the receptor, DWARF14 protein, is required for full function of strigolactones.	In addition, we show that D14 protein is contained in phloem sap and transported through the phloem to axillary buds in rice
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	grain	Identification and Molecular Mapping of Indica High-tillering Dwarf Mutant htd4, a Mild Phenotype Allelic Mutant of D14 in Rice (Oryza sativa L.).	Additionally, compared with other D14 allelic mutants, htd4 was the first mutant of D14 discovered in indica, and the differences of many yield traits such as plant height, seed-setting rates, and grain sizes between htd4 and WT were less than those between other D14 allelic mutants and WT
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	yield	Identification and Molecular Mapping of Indica High-tillering Dwarf Mutant htd4, a Mild Phenotype Allelic Mutant of D14 in Rice (Oryza sativa L.).	Additionally, compared with other D14 allelic mutants, htd4 was the first mutant of D14 discovered in indica, and the differences of many yield traits such as plant height, seed-setting rates, and grain sizes between htd4 and WT were less than those between other D14 allelic mutants and WT
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	grain size	Identification and Molecular Mapping of Indica High-tillering Dwarf Mutant htd4, a Mild Phenotype Allelic Mutant of D14 in Rice (Oryza sativa L.).	Additionally, compared with other D14 allelic mutants, htd4 was the first mutant of D14 discovered in indica, and the differences of many yield traits such as plant height, seed-setting rates, and grain sizes between htd4 and WT were less than those between other D14 allelic mutants and WT
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	Identification and Molecular Mapping of Indica High-tillering Dwarf Mutant htd4, a Mild Phenotype Allelic Mutant of D14 in Rice (Oryza sativa L.).	Identification and Molecular Mapping of Indica High-tillering Dwarf Mutant htd4, a Mild Phenotype Allelic Mutant of D14 in Rice (Oryza sativa L.).
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	dwarf	Identification and Molecular Mapping of Indica High-tillering Dwarf Mutant htd4, a Mild Phenotype Allelic Mutant of D14 in Rice (Oryza sativa L.).	We conclude that the absence of functional D14 caused the high-tillering dwarf phenotype of htd4
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	breeding	Identification and Molecular Mapping of Indica High-tillering Dwarf Mutant htd4, a Mild Phenotype Allelic Mutant of D14 in Rice (Oryza sativa L.).	Our results may provide vital information for the research on D14 function and the application of htd4 in molecular breeding
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	plant height	Identification and Molecular Mapping of Indica High-tillering Dwarf Mutant htd4, a Mild Phenotype Allelic Mutant of D14 in Rice (Oryza sativa L.).	Additionally, compared with other D14 allelic mutants, htd4 was the first mutant of D14 discovered in indica, and the differences of many yield traits such as plant height, seed-setting rates, and grain sizes between htd4 and WT were less than those between other D14 allelic mutants and WT
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	R protein	DWARF14, A Receptor Covalently Linked with the Active Form of Strigolactones, Undergoes Strigolactone-Dependent Degradation in Rice.	This stimulates the interaction between D14 and D3, leading to the ubiquitination and degradation of the transcriptional repressor protein D53
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	strigolactone	Rationally Designed Strigolactone Analogs as Antagonists of the D14 Receptor.	Rationally Designed Strigolactone Analogs as Antagonists of the D14 Receptor.
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	tiller	Identification and Characterization of a Novel Strigolactone-Insensitive Mutant, Dwarfism with High Tillering Ability 34 (dhta-34) in Rice (Oryza sativa L.).	This study revealed that DHTA-34 played an important role in inhabiting tiller development in rice and further identifying the function of D14
HTD2|D88|D14	Os03g0203200	LOC_Os03g10620	development	Identification and Characterization of a Novel Strigolactone-Insensitive Mutant, Dwarfism with High Tillering Ability 34 (dhta-34) in Rice (Oryza sativa L.).	This study revealed that DHTA-34 played an important role in inhabiting tiller development in rice and further identifying the function of D14
HTH1	Os04g0573100	LOC_Os04g48400	pollen	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.
HTH1	Os04g0573100	LOC_Os04g48400	pollen	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	Rice plants with HTH1 suppression through CRISPR (clustered regularly interspaced short palindromic repeats) and RNA interference (RNAi) displayed defective anther wall and aborted pollen
HTH1	Os04g0573100	LOC_Os04g48400	pollen	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	Our results suggested that HTH1 is involved in cutin biosynthesis and is required for anther development and pollen fertility in rice
HTH1	Os04g0573100	LOC_Os04g48400	anther	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.
HTH1	Os04g0573100	LOC_Os04g48400	anther	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	Rice plants with HTH1 suppression through CRISPR (clustered regularly interspaced short palindromic repeats) and RNA interference (RNAi) displayed defective anther wall and aborted pollen
HTH1	Os04g0573100	LOC_Os04g48400	anther	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	Our results suggested that HTH1 is involved in cutin biosynthesis and is required for anther development and pollen fertility in rice
HTH1	Os04g0573100	LOC_Os04g48400	development	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	Our results suggested that HTH1 is involved in cutin biosynthesis and is required for anther development and pollen fertility in rice
HTH1	Os04g0573100	LOC_Os04g48400	fertility	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.
HTH1	Os04g0573100	LOC_Os04g48400	fertility	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	Our results suggested that HTH1 is involved in cutin biosynthesis and is required for anther development and pollen fertility in rice
HTH1	Os04g0573100	LOC_Os04g48400	anther development	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	Our results suggested that HTH1 is involved in cutin biosynthesis and is required for anther development and pollen fertility in rice
HTH1	Os04g0573100	LOC_Os04g48400	cutin	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.
HTH1	Os04g0573100	LOC_Os04g48400	cutin	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for Pollen Fertility in Rice.	Our results suggested that HTH1 is involved in cutin biosynthesis and is required for anther development and pollen fertility in rice
HTH5	Os05g0150000	LOC_Os05g05740	tolerance	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.
HTH5	Os05g0150000	LOC_Os05g05740	tolerance	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 Moreover, we found that two SNPs located in the HTH5 promoter region are involved with its expression level and associated with heat tolerance diversity
HTH5	Os05g0150000	LOC_Os05g05740	tolerance	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 These findings suggest that the novel gene HTH5 might have great potential value for heightening rice tolerance to heat stress to the on-going threat of global warming
HTH5	Os05g0150000	LOC_Os05g05740	stress	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 Overexpression of HTH5 increased the seed-setting rate of rice plants under heat stress at the heading stage, whereas suppression of HTH5 resulted in greater susceptibility to heat stress
HTH5	Os05g0150000	LOC_Os05g05740	stress	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 These findings suggest that the novel gene HTH5 might have great potential value for heightening rice tolerance to heat stress to the on-going threat of global warming
HTH5	Os05g0150000	LOC_Os05g05740	reactive oxygen species	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 Further investigation indicated that HTH5 reduces reactive oxygen species accumulation at high temperatures by increasing the heat-induced pyridoxal 5&#x27;-phosphate (PLP) content
HTH5	Os05g0150000	LOC_Os05g05740	heat stress	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 Overexpression of HTH5 increased the seed-setting rate of rice plants under heat stress at the heading stage, whereas suppression of HTH5 resulted in greater susceptibility to heat stress
HTH5	Os05g0150000	LOC_Os05g05740	heat stress	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 These findings suggest that the novel gene HTH5 might have great potential value for heightening rice tolerance to heat stress to the on-going threat of global warming
HTH5	Os05g0150000	LOC_Os05g05740	Heat Stress	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 Overexpression of HTH5 increased the seed-setting rate of rice plants under heat stress at the heading stage, whereas suppression of HTH5 resulted in greater susceptibility to heat stress
HTH5	Os05g0150000	LOC_Os05g05740	Heat Stress	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 These findings suggest that the novel gene HTH5 might have great potential value for heightening rice tolerance to heat stress to the on-going threat of global warming
HTH5	Os05g0150000	LOC_Os05g05740	heat tolerance	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	 Moreover, we found that two SNPs located in the HTH5 promoter region are involved with its expression level and associated with heat tolerance diversity
HTH5	Os05g0150000	LOC_Os05g05740	high-temperature tolerance	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage
HWH1|hwh1	Os02g0621800	LOC_Os02g40840	transporter	Fine mapping and candidate gene analysis of hwh1 and hwh2, a set of complementary genes controlling hybrid breakdown in rice.	A comparison of the sequences of candidate genes among both parents and HB plants revealed that hwh1 encoded a putative glucose-methanol-choline oxidoreductase with one amino acid change compared to Hwh1 and that hwh2 probably encoded a putative hexose transporter with a six amino acid insertion compared to Hwh2
Hwi1	Os11g0173550	LOC_Os11g07240	crown	Genetic and physiological analysis of a novel type of interspecific hybrid weakness in rice	The dominant Hybrid weakness i1 (Hwi1) gene from wild rice is genetically incompatible with Teqing and induced a set of weakness symptoms, including growth suppression, yield decrease, impaired nutrient absorption, and the retardation of crown root initiation
Hwi1	Os11g0173550	LOC_Os11g07240	root	Genetic and physiological analysis of a novel type of interspecific hybrid weakness in rice	The dominant Hybrid weakness i1 (Hwi1) gene from wild rice is genetically incompatible with Teqing and induced a set of weakness symptoms, including growth suppression, yield decrease, impaired nutrient absorption, and the retardation of crown root initiation
Hwi1	Os11g0173550	LOC_Os11g07240	crown root	Genetic and physiological analysis of a novel type of interspecific hybrid weakness in rice	The dominant Hybrid weakness i1 (Hwi1) gene from wild rice is genetically incompatible with Teqing and induced a set of weakness symptoms, including growth suppression, yield decrease, impaired nutrient absorption, and the retardation of crown root initiation
Hwi1	Os11g0173550	LOC_Os11g07240	yield	Genetic and physiological analysis of a novel type of interspecific hybrid weakness in rice	The dominant Hybrid weakness i1 (Hwi1) gene from wild rice is genetically incompatible with Teqing and induced a set of weakness symptoms, including growth suppression, yield decrease, impaired nutrient absorption, and the retardation of crown root initiation
Hwi1	Os11g0173550	LOC_Os11g07240	growth	Genetic and physiological analysis of a novel type of interspecific hybrid weakness in rice	The dominant Hybrid weakness i1 (Hwi1) gene from wild rice is genetically incompatible with Teqing and induced a set of weakness symptoms, including growth suppression, yield decrease, impaired nutrient absorption, and the retardation of crown root initiation
Hwi2	Os01g0795400	LOC_Os01g58290	root	A two-locus interaction causes interspecific hybrid weakness in rice.	Functional analysis indicated that pyramiding of Hwi1 and Hwi2 activates the autoimmune response in the basal nodes of hybrids, interrupting root formation and then impairing shoot growth
Hwi2	Os01g0795400	LOC_Os01g58290	growth	A two-locus interaction causes interspecific hybrid weakness in rice.	Functional analysis indicated that pyramiding of Hwi1 and Hwi2 activates the autoimmune response in the basal nodes of hybrids, interrupting root formation and then impairing shoot growth
Hwi2	Os01g0795400	LOC_Os01g58290	shoot	A two-locus interaction causes interspecific hybrid weakness in rice.	Functional analysis indicated that pyramiding of Hwi1 and Hwi2 activates the autoimmune response in the basal nodes of hybrids, interrupting root formation and then impairing shoot growth
Hwi2	Os01g0795400	LOC_Os01g58290	immune response	A two-locus interaction causes interspecific hybrid weakness in rice.	Functional analysis indicated that pyramiding of Hwi1 and Hwi2 activates the autoimmune response in the basal nodes of hybrids, interrupting root formation and then impairing shoot growth
HYR	Os03g0117900	LOC_Os03g02650	photosynthesis	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.
HYR	Os03g0117900	LOC_Os03g02650	yield	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.
HYR	Os03g0117900	LOC_Os03g02650	tolerance	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.
HYR	Os03g0117900	LOC_Os03g02650	stress tolerance	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.
HYR	Os03g0117900	LOC_Os03g02650	HIGHER YIELD RICE	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.	To study the regulation of photosynthesis, we developed a rice gene regulatory network and identified a transcription factor HYR (HIGHER YIELD RICE) associated with PCM, which on expression in rice enhances photosynthesis under multiple environmental conditions, determining a morpho-physiological programme leading to higher grain yield under normal, drought and high-temperature stress conditions.
HYR	Os03g0117900	LOC_Os03g02650	transcription factor	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.	To study the regulation of photosynthesis, we developed a rice gene regulatory network and identified a transcription factor HYR (HIGHER YIELD RICE) associated with PCM, which on expression in rice enhances photosynthesis under multiple environmental conditions, determining a morpho-physiological programme leading to higher grain yield under normal, drought and high-temperature stress conditions.
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	tiller	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	A knock-down mutant of OsIAA6 showed abnormal tiller outgrowth, apparently due to the regulation of the auxin transporter OsPIN1 and the rice tillering inhibitor OsTB1
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	tiller	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	Our results confirm that the OsIAA6 gene is involved in drought stress responses and the control of tiller outgrowth
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	drought	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	In this study we found that the rice Aux/IAA gene OsIAA6 is highly induced by drought stress and that its overexpression in transgenic rice improved drought tolerance, likely via the regulation of auxin biosynthesis genes
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	drought	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	Our results confirm that the OsIAA6 gene is involved in drought stress responses and the control of tiller outgrowth
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	drought tolerance	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	In this study we found that the rice Aux/IAA gene OsIAA6 is highly induced by drought stress and that its overexpression in transgenic rice improved drought tolerance, likely via the regulation of auxin biosynthesis genes
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	meristem	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	We observed that OsIAA6 was specifically expressed in the axillary meristem of the basal stem, which is the tissue that gives rise to tillers
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	auxin	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	In this study we found that the rice Aux/IAA gene OsIAA6 is highly induced by drought stress and that its overexpression in transgenic rice improved drought tolerance, likely via the regulation of auxin biosynthesis genes
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	auxin	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	A knock-down mutant of OsIAA6 showed abnormal tiller outgrowth, apparently due to the regulation of the auxin transporter OsPIN1 and the rice tillering inhibitor OsTB1
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	stress	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	In this study we found that the rice Aux/IAA gene OsIAA6 is highly induced by drought stress and that its overexpression in transgenic rice improved drought tolerance, likely via the regulation of auxin biosynthesis genes
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	stress	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	Our results confirm that the OsIAA6 gene is involved in drought stress responses and the control of tiller outgrowth
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	transporter	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	A knock-down mutant of OsIAA6 showed abnormal tiller outgrowth, apparently due to the regulation of the auxin transporter OsPIN1 and the rice tillering inhibitor OsTB1
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	tillering	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	A knock-down mutant of OsIAA6 showed abnormal tiller outgrowth, apparently due to the regulation of the auxin transporter OsPIN1 and the rice tillering inhibitor OsTB1
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	auxin biosynthesis	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	In this study we found that the rice Aux/IAA gene OsIAA6 is highly induced by drought stress and that its overexpression in transgenic rice improved drought tolerance, likely via the regulation of auxin biosynthesis genes
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	auxin transport	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	A knock-down mutant of OsIAA6 showed abnormal tiller outgrowth, apparently due to the regulation of the auxin transporter OsPIN1 and the rice tillering inhibitor OsTB1
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	axillary meristem	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	We observed that OsIAA6 was specifically expressed in the axillary meristem of the basal stem, which is the tissue that gives rise to tillers
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	drought stress	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	In this study we found that the rice Aux/IAA gene OsIAA6 is highly induced by drought stress and that its overexpression in transgenic rice improved drought tolerance, likely via the regulation of auxin biosynthesis genes
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	drought stress	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	Our results confirm that the OsIAA6 gene is involved in drought stress responses and the control of tiller outgrowth
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	drought stress	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	In this study we found that the rice Aux/IAA gene OsIAA6 is highly induced by drought stress and that its overexpression in transgenic rice improved drought tolerance, likely via the regulation of auxin biosynthesis genes
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	drought stress	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	Our results confirm that the OsIAA6 gene is involved in drought stress responses and the control of tiller outgrowth
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	drought stress response	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	Our results confirm that the OsIAA6 gene is involved in drought stress responses and the control of tiller outgrowth
IAA6|OsIAA6	Os01g0741900	LOC_Os01g53880	stress response	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	Our results confirm that the OsIAA6 gene is involved in drought stress responses and the control of tiller outgrowth
IAMT1	Os04g0665200	LOC_Os04g56950	iaa	Structural, biochemical, and phylogenetic analyses suggest that indole-3-acetic acid methyltransferase is an evolutionarily ancient member of the SABATH family	Escherichia coli-expressed OsSABATH4 protein displayed the highest level of catalytic activity toward IAA and was therefore named OsIAMT1
IBF1	Os09g0292900	LOC_Os09g12150	reproductive	A novel gene IBF1 is required for the inhibition of brown pigment deposition in rice hull furrows	Real-time RT-PCR and GUS activity assays revealed that IBF1 specifically expressed in reproductive tissues
IBF1	Os09g0292900	LOC_Os09g12150	seed	A novel gene IBF1 is required for the inhibition of brown pigment deposition in rice hull furrows	In the ibf1 mutant, brown pigments specifically accumulate in hull furrows during seed maturation and reach a maximum level in dry seeds
ICS1|OsVDAC1|OsICS1	Os09g0361500|Os09g0361400	LOC_Os09g19734	defense	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	Our results suggest that OsWRKY6 positively regulates defense responses through activation of OsICS1 expression and OsWRKY6 stabilization
ICS1|OsVDAC1|OsICS1	Os09g0361500|Os09g0361400	LOC_Os09g19734	defense response	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	Our results suggest that OsWRKY6 positively regulates defense responses through activation of OsICS1 expression and OsWRKY6 stabilization
ICS1|OsVDAC1|OsICS1	Os09g0361500|Os09g0361400	LOC_Os09g19734	sa	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	This indicates that OsWRKY6 can directly regulate OsICS1 expression and thereby increase SA concentrations
ICS1|OsVDAC1|OsICS1	Os09g0361500|Os09g0361400	LOC_Os09g19734	SA	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	This indicates that OsWRKY6 can directly regulate OsICS1 expression and thereby increase SA concentrations
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes	The transcription factor IDEF1 regulates the response to Fe deficiency in Oryza sativa (rice) by recognizing CATGC sequences within the Fe deficiency-responsive cis-acting element IDE1
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes
IDEF1	Os08g0101000	LOC_Os08g01090	Al tolerance	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	Transgenic rice plants expressing an introduced IDEF1 exhibit substantial tolerance to iron deficiency in both hydroponic culture and calcareous soil
IDEF1	Os08g0101000	LOC_Os08g01090	endosperm	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	During seed germination, IDEF1 and IDEF2 were expressed in the endosperm and embryo
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	We identified the rice transcription factor IDEF1, which specifically binds the iron deficiency-responsive cis-acting element IDE1
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	IDEF1 belongs to an uncharacterized branch of the plant-specific transcription factor family ABI3/VP1 and exhibits the sequence recognition property of efficiently binding to the CATGC sequence within IDE1
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	IDEF1 overexpression leads to the enhanced expression of the iron deficiency-induced transcription factor gene OsIRO2, suggesting the presence of a sequential gene regulatory network
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The spatial expression and regulation of transcription factors IDEF1 and IDEF2
IDEF1	Os08g0101000	LOC_Os08g01090	seed	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes	Proximal regions of IDEF1-regulated gene promoters also showed enrichment of RY elements (CATGCA), which regulate gene expression during seed maturation
IDEF1	Os08g0101000	LOC_Os08g01090	seed	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes	The expression of several genes encoding late embryogenesis abundant proteins, including Osem, was induced in Fe-deficient roots and/or leaves in an IDEF1-dependent manner, suggesting a possible function of seed maturation-related genes in Fe-deficient vegetative organs
IDEF1	Os08g0101000	LOC_Os08g01090	reproductive	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	CONCLUSIONS: IDEF1 and IDEF2 are constitutively expressed during both vegetative and reproductive stages
IDEF1	Os08g0101000	LOC_Os08g01090	leaf	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	IDEF1 and IDEF2 expression was dominant in leaf mesophyll and vascular cells, respectively
IDEF1	Os08g0101000	LOC_Os08g01090	vascular bundle	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	KEY RESULTS: IDEF1 and IDEF2 were highly expressed in the basal parts of the lateral roots and vascular bundles
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	The Oryza sativa (rice) transcription factor IDEF1 plays a crucial role in regulating iron deficiency-induced genes involved in iron homeostasis
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	Transgenic rice plants constitutively overexpressing IDEF1 without these metal-binding domains failed to cause pleiotropic effects conferred by overexpression of full-length IDEF1, including a low germination rate, impaired seedling growth, tolerance to iron deficiency in hydroponic culture, and enhanced expression of various iron deficiency-inducible genes
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	Impairment of the transcriptional regulation of IDEF1 by deletion of the metal-binding domains occurred primarily at an early stage of iron deficiency
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	These results suggest that the histidine-asparagine and proline-rich regions in rice IDEF1 directly bind to divalent metals and sense the cellular metal ion balance caused by changes in iron availability
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status
IDEF1	Os08g0101000	LOC_Os08g01090	seedling	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	Transgenic rice plants constitutively overexpressing IDEF1 without these metal-binding domains failed to cause pleiotropic effects conferred by overexpression of full-length IDEF1, including a low germination rate, impaired seedling growth, tolerance to iron deficiency in hydroponic culture, and enhanced expression of various iron deficiency-inducible genes
IDEF1	Os08g0101000	LOC_Os08g01090	pollen	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	IDEF1 was strongly expressed in pollen, ovaries, the aleurone layer and embryo
IDEF1	Os08g0101000	LOC_Os08g01090	vegetative	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	CONCLUSIONS: IDEF1 and IDEF2 are constitutively expressed during both vegetative and reproductive stages
IDEF1	Os08g0101000	LOC_Os08g01090	lateral root	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	KEY RESULTS: IDEF1 and IDEF2 were highly expressed in the basal parts of the lateral roots and vascular bundles
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The iron deficiency-responsive cis-acting element binding factors 1 and 2 (IDEF1 and IDEF2) regulate transcriptional response to iron deficiency in rice roots
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	Expression patterns of the target genes of IDEF1 and IDEF2 were analysed using transformants with induced or repressed expression of IDEF1 or IDEF2 grown in iron-rich or in iron-deficient solutions for 1 d
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	Expression of IDEF1 target genes was regulated in iron-rich roots similar to early iron-deficiency stages
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The spatial expression patterns and gene regulation of IDEF1 and IDEF2 in roots are generally conserved under conditions of iron sufficiency and deficiency, suggesting complicated interactions with unknown factors for sensing and transmitting iron-deficiency signals
IDEF1	Os08g0101000	LOC_Os08g01090	vegetative	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes	The expression of several genes encoding late embryogenesis abundant proteins, including Osem, was induced in Fe-deficient roots and/or leaves in an IDEF1-dependent manner, suggesting a possible function of seed maturation-related genes in Fe-deficient vegetative organs
IDEF1	Os08g0101000	LOC_Os08g01090	vegetative	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes
IDEF1	Os08g0101000	LOC_Os08g01090	biomass	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	Manipulation of IDEF1 also provides another approach for producing crops tolerant of iron deficiency to enhance food and biomass production in calcareous soils
IDEF1	Os08g0101000	LOC_Os08g01090	seed germination	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	During seed germination, IDEF1 and IDEF2 were expressed in the endosperm and embryo
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	The Oryza sativa (rice) transcription factor IDEF1 plays a crucial role in regulating iron deficiency-induced genes involved in iron homeostasis
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status
IDEF1	Os08g0101000	LOC_Os08g01090	homeostasis	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	The Oryza sativa (rice) transcription factor IDEF1 plays a crucial role in regulating iron deficiency-induced genes involved in iron homeostasis
IDEF1	Os08g0101000	LOC_Os08g01090	seed	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	During seed germination, IDEF1 and IDEF2 were expressed in the endosperm and embryo
IDEF1	Os08g0101000	LOC_Os08g01090	root	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	IDEF1 transcripts are constitutively present in rice roots and leaves
IDEF1	Os08g0101000	LOC_Os08g01090	root	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	Transgenic tobacco plants expressing IDEF1 under the control of the constitutive cauliflower mosaic virus 35S promoter transactivate IDE1-mediated expression only in iron-deficient roots
IDEF1	Os08g0101000	LOC_Os08g01090	root	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The iron deficiency-responsive cis-acting element binding factors 1 and 2 (IDEF1 and IDEF2) regulate transcriptional response to iron deficiency in rice roots
IDEF1	Os08g0101000	LOC_Os08g01090	root	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	KEY RESULTS: IDEF1 and IDEF2 were highly expressed in the basal parts of the lateral roots and vascular bundles
IDEF1	Os08g0101000	LOC_Os08g01090	root	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	Expression of IDEF1 target genes was regulated in iron-rich roots similar to early iron-deficiency stages
IDEF1	Os08g0101000	LOC_Os08g01090	root	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The spatial expression patterns and gene regulation of IDEF1 and IDEF2 in roots are generally conserved under conditions of iron sufficiency and deficiency, suggesting complicated interactions with unknown factors for sensing and transmitting iron-deficiency signals
IDEF1	Os08g0101000	LOC_Os08g01090	growth	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status	Transgenic rice plants constitutively overexpressing IDEF1 without these metal-binding domains failed to cause pleiotropic effects conferred by overexpression of full-length IDEF1, including a low germination rate, impaired seedling growth, tolerance to iron deficiency in hydroponic culture, and enhanced expression of various iron deficiency-inducible genes
IDEF1	Os08g0101000	LOC_Os08g01090	root	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes	The expression of several genes encoding late embryogenesis abundant proteins, including Osem, was induced in Fe-deficient roots and/or leaves in an IDEF1-dependent manner, suggesting a possible function of seed maturation-related genes in Fe-deficient vegetative organs
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	We identified the rice transcription factor IDEF1, which specifically binds the iron deficiency-responsive cis-acting element IDE1
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	Transgenic tobacco plants expressing IDEF1 under the control of the constitutive cauliflower mosaic virus 35S promoter transactivate IDE1-mediated expression only in iron-deficient roots
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	Transgenic rice plants expressing an introduced IDEF1 exhibit substantial tolerance to iron deficiency in both hydroponic culture and calcareous soil
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	IDEF1 overexpression leads to the enhanced expression of the iron deficiency-induced transcription factor gene OsIRO2, suggesting the presence of a sequential gene regulatory network
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	Manipulation of IDEF1 also provides another approach for producing crops tolerant of iron deficiency to enhance food and biomass production in calcareous soils
IDEF1	Os08g0101000	LOC_Os08g01090	iron	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants
IDEF1	Os08g0101000	LOC_Os08g01090	transcription factor	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	Many jasmonate-inducible genes were also negatively regulated by the ubiquitin ligases OsHRZ1 and OsHRZ2 and positively regulated by the transcription factor IDEF1
IDEF1	Os08g0101000	LOC_Os08g01090	jasmonate	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	These results indicate that jasmonate signaling is activated during the very early stages of iron deficiency, which is partly regulated by IDEF1 and OsHRZs
IDEF1	Os08g0101000	LOC_Os08g01090	iron	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	These results indicate that jasmonate signaling is activated during the very early stages of iron deficiency, which is partly regulated by IDEF1 and OsHRZs
IDEF1	Os08g0101000	LOC_Os08g01090	Ubiquitin	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	Many jasmonate-inducible genes were also negatively regulated by the ubiquitin ligases OsHRZ1 and OsHRZ2 and positively regulated by the transcription factor IDEF1
IDEF2	Os05g0426200	LOC_Os05g35170	transcription factor	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	We identified a novel transcription factor of rice and barley, IDEF2, which specifically binds to the iron deficiency-responsive cis-acting element 2 (IDE2) by yeast one-hybrid screening
IDEF2	Os05g0426200	LOC_Os05g35170	transcription factor	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	IDEF2 belongs to an uncharacterized branch of the NAC transcription factor family and exhibits novel properties of sequence recognition
IDEF2	Os05g0426200	LOC_Os05g35170	transcription factor	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants
IDEF2	Os05g0426200	LOC_Os05g35170	root	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	IDEF2 transcripts are constitutively present in rice roots and leaves
IDEF2	Os05g0426200	LOC_Os05g35170	endosperm	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	IDEF2 was expressed in pollen, ovaries and the dorsal vascular region of the endosperm
IDEF2	Os05g0426200	LOC_Os05g35170	endosperm	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	During seed germination, IDEF1 and IDEF2 were expressed in the endosperm and embryo
IDEF2	Os05g0426200	LOC_Os05g35170	seed germination	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	During seed germination, IDEF1 and IDEF2 were expressed in the endosperm and embryo
IDEF2	Os05g0426200	LOC_Os05g35170	leaf	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	IDEF1 and IDEF2 expression was dominant in leaf mesophyll and vascular cells, respectively
IDEF2	Os05g0426200	LOC_Os05g35170	seed	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	During seed germination, IDEF1 and IDEF2 were expressed in the endosperm and embryo
IDEF2	Os05g0426200	LOC_Os05g35170	transcription factor	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The spatial expression and regulation of transcription factors IDEF1 and IDEF2
IDEF2	Os05g0426200	LOC_Os05g35170	lateral root	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	KEY RESULTS: IDEF1 and IDEF2 were highly expressed in the basal parts of the lateral roots and vascular bundles
IDEF2	Os05g0426200	LOC_Os05g35170	root	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The iron deficiency-responsive cis-acting element binding factors 1 and 2 (IDEF1 and IDEF2) regulate transcriptional response to iron deficiency in rice roots
IDEF2	Os05g0426200	LOC_Os05g35170	root	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	KEY RESULTS: IDEF1 and IDEF2 were highly expressed in the basal parts of the lateral roots and vascular bundles
IDEF2	Os05g0426200	LOC_Os05g35170	root	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The spatial expression patterns and gene regulation of IDEF1 and IDEF2 in roots are generally conserved under conditions of iron sufficiency and deficiency, suggesting complicated interactions with unknown factors for sensing and transmitting iron-deficiency signals
IDEF2	Os05g0426200	LOC_Os05g35170	vascular bundle	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	KEY RESULTS: IDEF1 and IDEF2 were highly expressed in the basal parts of the lateral roots and vascular bundles
IDEF2	Os05g0426200	LOC_Os05g35170	vegetative	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	CONCLUSIONS: IDEF1 and IDEF2 are constitutively expressed during both vegetative and reproductive stages
IDEF2	Os05g0426200	LOC_Os05g35170	transporter	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	Several genes up-regulated by iron deficiency, including the Fe(II)-nicotianamine transporter gene OsYSL2, were less induced by iron deficiency in the RNAi rice of IDEF2, suggesting that IDEF2 is involved in the regulation of these genes
IDEF2	Os05g0426200	LOC_Os05g35170	reproductive	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	CONCLUSIONS: IDEF1 and IDEF2 are constitutively expressed during both vegetative and reproductive stages
IDEF2	Os05g0426200	LOC_Os05g35170	iron	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The iron deficiency-responsive cis-acting element binding factors 1 and 2 (IDEF1 and IDEF2) regulate transcriptional response to iron deficiency in rice roots
IDEF2	Os05g0426200	LOC_Os05g35170	iron	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	Expression patterns of the target genes of IDEF1 and IDEF2 were analysed using transformants with induced or repressed expression of IDEF1 or IDEF2 grown in iron-rich or in iron-deficient solutions for 1 d
IDEF2	Os05g0426200	LOC_Os05g35170	iron	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	In addition, the expression patterns of IDEF2 target genes were similar between iron-rich conditions and early or subsequent iron deficiency
IDEF2	Os05g0426200	LOC_Os05g35170	iron	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	The spatial expression patterns and gene regulation of IDEF1 and IDEF2 in roots are generally conserved under conditions of iron sufficiency and deficiency, suggesting complicated interactions with unknown factors for sensing and transmitting iron-deficiency signals
IDEF2	Os05g0426200	LOC_Os05g35170	iron	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	We identified a novel transcription factor of rice and barley, IDEF2, which specifically binds to the iron deficiency-responsive cis-acting element 2 (IDE2) by yeast one-hybrid screening
IDEF2	Os05g0426200	LOC_Os05g35170	iron	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	Repression of the function of IDEF2 by the RNA interference (RNAi) technique and chimeric repressor gene-silencing technology (CRES-T) caused aberrant iron homeostasis in rice
IDEF2	Os05g0426200	LOC_Os05g35170	iron	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	Several genes up-regulated by iron deficiency, including the Fe(II)-nicotianamine transporter gene OsYSL2, were less induced by iron deficiency in the RNAi rice of IDEF2, suggesting that IDEF2 is involved in the regulation of these genes
IDEF2	Os05g0426200	LOC_Os05g35170	iron	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants
IDEF2	Os05g0426200	LOC_Os05g35170	homeostasis	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	Repression of the function of IDEF2 by the RNA interference (RNAi) technique and chimeric repressor gene-silencing technology (CRES-T) caused aberrant iron homeostasis in rice
IDEF2	Os05g0426200	LOC_Os05g35170	homeostasis	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants
IDEF2	Os05g0426200	LOC_Os05g35170	pollen	The spatial expression and regulation of transcription factors IDEF1 and IDEF2	IDEF2 was expressed in pollen, ovaries and the dorsal vascular region of the endosperm
IF1-1	Os08g0558900	LOC_Os08g44460	mitochondria	Characterization of two cDNA clones encoding isozymes of the F1F0-ATPase inhibitor protein of rice mitochondria	A comparison of the deduced amino acid sequences of the two IF 1 genes and the amino acid sequence of the mature IF1 protein from potato revealed that IF1-1 and IF1-2 have N-terminal extensions with features that are characteristic of a mitochondrial targeting signal
IF1-2	Os09g0568900	LOC_Os09g39550	mitochondria	Characterization of two cDNA clones encoding isozymes of the F1F0-ATPase inhibitor protein of rice mitochondria	A comparison of the deduced amino acid sequences of the two IF 1 genes and the amino acid sequence of the mature IF1 protein from potato revealed that IF1-1 and IF1-2 have N-terminal extensions with features that are characteristic of a mitochondrial targeting signal
IIP4	Os04g0458200	LOC_Os04g38520	nucleus	An uncanonical CCCH-tandem zinc finger protein represses secondary wall synthesis and controls mechanical strength in rice.	Mutagenesis analyses showed that phosphomimic IIP4 proteins translocate from the nucleus to the cytoplasm, which releases interacting NACs and attenuates the repression function
ILA1	Os06g0724900	LOC_Os06g50920	vascular bundle	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	The increased leaf angle in ila1 is caused by abnormal vascular bundle formation and cell wall composition in the leaf lamina joint, as distinct from the mechanism observed in brassinosteroid-related mutants
ILA1	Os06g0724900	LOC_Os06g50920	vascular bundle	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	ILA1 is predominantly resident in the nucleus and expressed in the vascular bundles of leaf lamina joints
ILA1	Os06g0724900	LOC_Os06g50920	leaf	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	We report here the characterization of a rice (Oryza sativa) mutant, increased leaf angle1 (ila1), resulting from a T-DNA insertion in a Group C MAPKKK gene
ILA1	Os06g0724900	LOC_Os06g50920	leaf	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	The increased leaf angle in ila1 is caused by abnormal vascular bundle formation and cell wall composition in the leaf lamina joint, as distinct from the mechanism observed in brassinosteroid-related mutants
ILA1	Os06g0724900	LOC_Os06g50920	leaf	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	ILA1 is predominantly resident in the nucleus and expressed in the vascular bundles of leaf lamina joints
ILA1	Os06g0724900	LOC_Os06g50920	leaf	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	Microarray analyses of leaf lamina joints provided additional evidence for alterations in mechanical strength in ila1
ILA1	Os06g0724900	LOC_Os06g50920	leaf	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	ILA1 is thus a key factor regulating mechanical tissue formation at the leaf lamina joint
ILA1	Os06g0724900	LOC_Os06g50920	lamina	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	The increased leaf angle in ila1 is caused by abnormal vascular bundle formation and cell wall composition in the leaf lamina joint, as distinct from the mechanism observed in brassinosteroid-related mutants
ILA1	Os06g0724900	LOC_Os06g50920	lamina	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	ILA1 is predominantly resident in the nucleus and expressed in the vascular bundles of leaf lamina joints
ILA1	Os06g0724900	LOC_Os06g50920	lamina	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	Microarray analyses of leaf lamina joints provided additional evidence for alterations in mechanical strength in ila1
ILA1	Os06g0724900	LOC_Os06g50920	lamina	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	ILA1 is thus a key factor regulating mechanical tissue formation at the leaf lamina joint
ILA1	Os06g0724900	LOC_Os06g50920	cell wall	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	The increased leaf angle in ila1 is caused by abnormal vascular bundle formation and cell wall composition in the leaf lamina joint, as distinct from the mechanism observed in brassinosteroid-related mutants
ILA1	Os06g0724900	LOC_Os06g50920	brassinosteroid	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice	The increased leaf angle in ila1 is caused by abnormal vascular bundle formation and cell wall composition in the leaf lamina joint, as distinct from the mechanism observed in brassinosteroid-related mutants
ILI1	Os04g0641700	LOC_Os04g54900	leaf	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	Overexpression and RNA interference suppression of ILI1 increase and reduce, respectively, rice laminar inclination, confirming a positive role of ILI1 in leaf bending
ILI1	Os04g0641700	LOC_Os04g54900	leaf	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	ILI1 and PRE1 interact with basic helix-loop-helix (bHLH) protein IBH1 (ILI1 binding bHLH), whose overexpression causes erect leaf in rice and dwarfism in Arabidopsis
ILI1	Os04g0641700	LOC_Os04g54900	BR	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	We identified a rice mutant (ili1-D) showing an increased lamina inclination phenotype similar to that caused by BR treatment
ILI1	Os04g0641700	LOC_Os04g54900	BR	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	BR increases the RNA levels of ILI1 and PRE1 but represses IBH1 through the transcription factor BZR1
ILI1	Os04g0641700	LOC_Os04g54900	transcription factor	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	Thus, ILI1 and PRE1 may inactivate inhibitory bHLH transcription factors through heterodimerization
ILI1	Os04g0641700	LOC_Os04g54900	transcription factor	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	BR increases the RNA levels of ILI1 and PRE1 but represses IBH1 through the transcription factor BZR1
ILI1	Os04g0641700	LOC_Os04g54900	lamina	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	We identified a rice mutant (ili1-D) showing an increased lamina inclination phenotype similar to that caused by BR treatment
ILI1	Os04g0641700	LOC_Os04g54900	lamina	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	Overexpression and RNA interference suppression of ILI1 increase and reduce, respectively, rice laminar inclination, confirming a positive role of ILI1 in leaf bending
ILI1	Os04g0641700	LOC_Os04g54900	lamina	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	The spatial and temporal expression patterns support roles of ILI1 in laminar joint bending and PRE1/At IBH1 in the transition from growth of young organs to growth arrest
ILI1	Os04g0641700	LOC_Os04g54900	leaf	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	LIC directly regulated target genes such as INCREASED LEAF INCLINATION 1 (ILI1) to oppose the action of BZR1
ILI1	Os04g0641700	LOC_Os04g54900	cell elongation	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	Overexpression of ILI1 or PRE1 increases cell elongation and suppresses dwarf phenotypes caused by overexpression of IBH1 in Arabidopsis
ILI1	Os04g0641700	LOC_Os04g54900	erect	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	ILI1 and PRE1 interact with basic helix-loop-helix (bHLH) protein IBH1 (ILI1 binding bHLH), whose overexpression causes erect leaf in rice and dwarfism in Arabidopsis
ILI1	Os04g0641700	LOC_Os04g54900	growth	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	The spatial and temporal expression patterns support roles of ILI1 in laminar joint bending and PRE1/At IBH1 in the transition from growth of young organs to growth arrest
ILI1	Os04g0641700	LOC_Os04g54900	dwarf	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	ILI1 and PRE1 interact with basic helix-loop-helix (bHLH) protein IBH1 (ILI1 binding bHLH), whose overexpression causes erect leaf in rice and dwarfism in Arabidopsis
ILI1	Os04g0641700	LOC_Os04g54900	dwarf	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	Overexpression of ILI1 or PRE1 increases cell elongation and suppresses dwarf phenotypes caused by overexpression of IBH1 in Arabidopsis
ILI2	Os11g0603000	LOC_Os11g39000	disease	The Rice ILI2 Locus Is a Bidirectional Target of the African Xanthomonas oryzae pv. oryzae Major Transcription Activator-like Effector TalC but Does Not Contribute to Disease Susceptibility.	The Rice ILI2 Locus Is a Bidirectional Target of the African Xanthomonas oryzae pv. oryzae Major Transcription Activator-like Effector TalC but Does Not Contribute to Disease Susceptibility.
ILI2	Os11g0603000	LOC_Os11g39000	transcription activator	The Rice ILI2 Locus Is a Bidirectional Target of the African Xanthomonas oryzae pv. oryzae Major Transcription Activator-like Effector TalC but Does Not Contribute to Disease Susceptibility.	The Rice ILI2 Locus Is a Bidirectional Target of the African Xanthomonas oryzae pv. oryzae Major Transcription Activator-like Effector TalC but Does Not Contribute to Disease Susceptibility.
IPI1	Os01g0350900	LOC_Os01g24880	shoot	Tissue-specific Ubiquitination by IPA1 INTERACTING PROTEIN 1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.	IPI1 promotes the degradation of IPA1 in panicles while it stabilizes IPA1 in shoot apexes
IPI1	Os01g0350900	LOC_Os01g24880	shoot	Tissue-specific Ubiquitination by IPA1 INTERACTING PROTEIN 1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.	Moreover, IPI1 could ubiquitinate IPA1-mediated complex with different polyubiquitin chains, adding K48-linked polyubiquitin chains in panicles and K63-linked polyubiquitin chains in the shoot apex
IPI1	Os01g0350900	LOC_Os01g24880	yield	Tissue-specific Ubiquitination by IPA1 INTERACTING PROTEIN 1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.	Consistent with these findings, the ipi1 loss-of-function mutants showed markedly altered plant architecture, including more tillers, enlarged panicles, and increased yield per plant
IPI1	Os01g0350900	LOC_Os01g24880	architecture	Tissue-specific Ubiquitination by IPA1 INTERACTING PROTEIN 1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.	These results demonstrate that IPI1 affects plant architecture through precisely tuning IPA1 protein levels in different tissues in rice, and provide new insight into the tissue-specific regulation of plant architecture and important genetic resources for molecular breeding applications
IPI1	Os01g0350900	LOC_Os01g24880	breeding	Tissue-specific Ubiquitination by IPA1 INTERACTING PROTEIN 1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.	These results demonstrate that IPI1 affects plant architecture through precisely tuning IPA1 protein levels in different tissues in rice, and provide new insight into the tissue-specific regulation of plant architecture and important genetic resources for molecular breeding applications
IPI1	Os01g0350900	LOC_Os01g24880	plant architecture	Tissue-specific Ubiquitination by IPA1 INTERACTING PROTEIN 1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.	Consistent with these findings, the ipi1 loss-of-function mutants showed markedly altered plant architecture, including more tillers, enlarged panicles, and increased yield per plant
IPI1	Os01g0350900	LOC_Os01g24880	plant architecture	Tissue-specific Ubiquitination by IPA1 INTERACTING PROTEIN 1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.	These results demonstrate that IPI1 affects plant architecture through precisely tuning IPA1 protein levels in different tissues in rice, and provide new insight into the tissue-specific regulation of plant architecture and important genetic resources for molecular breeding applications
IPK1|OsIPK1	Os04g0661200	LOC_Os04g56580	phosphate	Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1)	85-fold down-regulation in IPK1 transcripts, which correlated to a significant reduction in phytate levels and a concomitant increase in the amount of inorganic phosphate (Pi)
IPK1|OsIPK1	Os04g0661200	LOC_Os04g56580	phosphate	Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1)	Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1)
IPK1|OsIPK1	Os04g0661200	LOC_Os04g56580	growth	Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1)	The results provide evidence that silencing of IPK1 gene can mediate a substantial reduction in seed phytate levels without hampering the growth and development of transgenic rice plants
IPK1|OsIPK1	Os04g0661200	LOC_Os04g56580	seed	Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1)	In the present study, we report the RNAi-mediated seed-specific silencing (using the Oleosin18 promoter) of the IPK1 gene, which catalyzes the last step of phytic acid biosynthesis in rice
IPK1|OsIPK1	Os04g0661200	LOC_Os04g56580	seed	Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1)	The results provide evidence that silencing of IPK1 gene can mediate a substantial reduction in seed phytate levels without hampering the growth and development of transgenic rice plants
IPK1|OsIPK1	Os04g0661200	LOC_Os04g56580	seed	Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1)	Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1)
IRE1|OsIRE1	Os07g0471000	LOC_Os07g28820	transcription factor	Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice	The endoplasmic reticulum (ER) stress sensor IRE1 transduces signals by inducing the unconventional splicing of mRNAs encoding key transcription factors: HAC1 in yeast and XBP1 in animals
IRE1|OsIRE1	Os07g0471000	LOC_Os07g28820	transcription factor	Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice	This study demonstrates that the Oryza sativa (rice) OsbZIP50 transcription factor, an orthologue of Arabidopsis AtbZIP60, is regulated by IRE1-mediated splicing of its RNA
IRE1|OsIRE1	Os07g0471000	LOC_Os07g28820	transcription factor	Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice	OsbZIP50 mRNA is spliced in a similar manner to HAC1 and XBP1 mRNAs; however, this splicing has very different effects on the translation products, a finding that shows the diversity of IRE1-related transcription factors in eukaryotes
IRP1	Os04g0352066	LOC_Os04g28390	transcription factor	The secreted peptide IRP1 functions as a phytocytokine in rice immunity.	 RNA-seq results revealed that 84% of genes upregulated by IRP1 peptide were also induced by a microbe-associated molecular pattern(MAMP) chitin, including 13 OsWRKY transcription factors, indicating that IRP1 and chitin share a similar signaling pathway
IRP1	Os04g0352066	LOC_Os04g28390	resistance	The secreted peptide IRP1 functions as a phytocytokine in rice immunity.	 Rice plants overexpressing IRP1 enhanced resistance to the virulent rice blast fungus
IRP1	Os04g0352066	LOC_Os04g28390	defense	The secreted peptide IRP1 functions as a phytocytokine in rice immunity.	 Application of IRP1 peptide to rice suspension cells triggered the expression of IRP1 itself and the defense gene PAL1
IRP1	Os04g0352066	LOC_Os04g28390	blast	The secreted peptide IRP1 functions as a phytocytokine in rice immunity.	 Rice plants overexpressing IRP1 enhanced resistance to the virulent rice blast fungus
IRP1	Os04g0352066	LOC_Os04g28390	immunity	The secreted peptide IRP1 functions as a phytocytokine in rice immunity.	 Here, we studied IRP1 functions in rice immunity
IRP1	Os04g0352066	LOC_Os04g28390	immunity	The secreted peptide IRP1 functions as a phytocytokine in rice immunity.	 Collectively, our findings indicate that IRP1 functions as a phytocyokine in rice immunity regulating MAPKs and OsWRKYs that could amplify chitin and other signaling pathways, and provide new insights into how MAMPs and phytocyokines cooperatively regulate rice immunity
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	chloroplast	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	Furthermore, chloroplasts in the leaf blade of isa3 seedlings were large and pleomorphic
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	endosperm	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	We investigated whether ISA3 plays a role in amyloplast development and starch metabolism in the developing endosperm
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	endosperm	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	ISA3-green fluorescent protein (GFP) fusion protein expressed under the control of the rice ISA3 promoter was targeted to the amyloplast stroma in the endosperm
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	endosperm	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	Both overexpression and loss of function of ISA3 in the endosperm generated pleomorphic amyloplasts and starch granules
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	starch	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	A transposon-inserted rice mutant of isoamylase3 (isa3) contained an increased amount of starch in the leaf blade at the end of the night, indicating that ISA3 plays a role in the degradation of transitory starch during the night
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	starch	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	We investigated whether ISA3 plays a role in amyloplast development and starch metabolism in the developing endosperm
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	starch	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	Overexpression of ISA3 in the sugary1 mutant, which is deficient in ISA1 activity, did not convert water-soluble phytoglycogen to starch granules, indicating that ISA1 and ISA3 are not functionally redundant
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	starch	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	Both overexpression and loss of function of ISA3 in the endosperm generated pleomorphic amyloplasts and starch granules
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	starch	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	These results suggest that ISA3 facilitates starch metabolism and affects morphological characteristics of plastids in rice
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	leaf	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	A transposon-inserted rice mutant of isoamylase3 (isa3) contained an increased amount of starch in the leaf blade at the end of the night, indicating that ISA3 plays a role in the degradation of transitory starch during the night
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	leaf	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	Furthermore, chloroplasts in the leaf blade of isa3 seedlings were large and pleomorphic
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	seedling	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis	Furthermore, chloroplasts in the leaf blade of isa3 seedlings were large and pleomorphic
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	stress	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	seed	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	seed germination	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	tolerance	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	yield	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
ISA3|OsISA3	Os09g0469400	LOC_Os09g29404	stress tolerance	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	root	Role of the rice transcription factor JAmyb in abiotic stress response	JAmyb overexpression in transgenic Arabidopsis improved tolerance to high-salinity stress during seed germination, seedling growth, and root elongation
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	transcription factor	Role of the rice transcription factor JAmyb in abiotic stress response	In this study, we identified a rice R2R3-type MYB transcription factor gene, JAmyb, as a gene whose overexpression causes tolerance to high salinity
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	transcription factor	Role of the rice transcription factor JAmyb in abiotic stress response	Several transcription factors involved in the jasmonate (JA)-mediated stress response are also regulated by JAmyb
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	transcription factor	Role of the rice transcription factor JAmyb in abiotic stress response	Role of the rice transcription factor JAmyb in abiotic stress response
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	growth	Role of the rice transcription factor JAmyb in abiotic stress response	JAmyb overexpression in transgenic Arabidopsis improved tolerance to high-salinity stress during seed germination, seedling growth, and root elongation
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	jasmonate	Role of the rice transcription factor JAmyb in abiotic stress response	Several transcription factors involved in the jasmonate (JA)-mediated stress response are also regulated by JAmyb
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	disease	Role of the rice transcription factor JAmyb in abiotic stress response	JAmyb has been reported to be associated with disease response
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	seedling	Role of the rice transcription factor JAmyb in abiotic stress response	JAmyb overexpression in transgenic Arabidopsis improved tolerance to high-salinity stress during seed germination, seedling growth, and root elongation
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	seedling	Role of the rice transcription factor JAmyb in abiotic stress response	In rice seedlings, JAmyb expression was induced by high-salinity and high-osmotic stresses and reactive oxygen species (ROS), suggesting that JAmyb is responsible for abiotic stress response
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	salinity	Role of the rice transcription factor JAmyb in abiotic stress response	In this study, we identified a rice R2R3-type MYB transcription factor gene, JAmyb, as a gene whose overexpression causes tolerance to high salinity
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	salinity	Role of the rice transcription factor JAmyb in abiotic stress response	JAmyb overexpression in transgenic Arabidopsis improved tolerance to high-salinity stress during seed germination, seedling growth, and root elongation
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	salinity	Role of the rice transcription factor JAmyb in abiotic stress response	In rice seedlings, JAmyb expression was induced by high-salinity and high-osmotic stresses and reactive oxygen species (ROS), suggesting that JAmyb is responsible for abiotic stress response
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	homeostasis	Role of the rice transcription factor JAmyb in abiotic stress response	Microarray analysis showed that the overexpression of JAmyb stimulates the expression of several defense-associated genes, some of which have been predicted to be involved in osmotic adjustment, ROS removal, and ion homeostasis
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	seed	Role of the rice transcription factor JAmyb in abiotic stress response	JAmyb overexpression in transgenic Arabidopsis improved tolerance to high-salinity stress during seed germination, seedling growth, and root elongation
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	seed	Role of the rice transcription factor JAmyb in abiotic stress response	In rice seedlings, JAmyb expression was induced by high-salinity and high-osmotic stresses and reactive oxygen species (ROS), suggesting that JAmyb is responsible for abiotic stress response
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	seed germination	Role of the rice transcription factor JAmyb in abiotic stress response	JAmyb overexpression in transgenic Arabidopsis improved tolerance to high-salinity stress during seed germination, seedling growth, and root elongation
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	salinity stress	Role of the rice transcription factor JAmyb in abiotic stress response	JAmyb overexpression in transgenic Arabidopsis improved tolerance to high-salinity stress during seed germination, seedling growth, and root elongation
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	abiotic stress	Role of the rice transcription factor JAmyb in abiotic stress response	In rice seedlings, JAmyb expression was induced by high-salinity and high-osmotic stresses and reactive oxygen species (ROS), suggesting that JAmyb is responsible for abiotic stress response
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	abiotic stress	Role of the rice transcription factor JAmyb in abiotic stress response	Our observations suggest that JAmyb plays a role in JA-mediated abiotic stress response in addition to biotic stress response in rice
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	abiotic stress	Role of the rice transcription factor JAmyb in abiotic stress response	Role of the rice transcription factor JAmyb in abiotic stress response
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	defense	Role of the rice transcription factor JAmyb in abiotic stress response	Microarray analysis showed that the overexpression of JAmyb stimulates the expression of several defense-associated genes, some of which have been predicted to be involved in osmotic adjustment, ROS removal, and ion homeostasis
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	seedlings	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	After inoculation with the blast isolate Hoku1, the expression of OsJAMyb was more rapidly and strongly induced in the seedlings of blast-resistant Heikezijing compared with that in the blast-susceptible landrace Suyunuo
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	leaf	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	The expression of OsJAMyb gene was detected in the root, stem, leaf, sheath, immature panicle and flowering panicle of rice, with highest expression in the leaf
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	resistance	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	The OsJAMyb overexpressing transgenic lines (T3 generation) in Suyunuo showed increased resistance to blast infection with less lesion number in inoculated leaves compared with non-transgenic control plants
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	resistance	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	The results indicate that OsJAMyb might be involved in the resistance to blast infection in rice
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	panicle	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	The expression of OsJAMyb gene was detected in the root, stem, leaf, sheath, immature panicle and flowering panicle of rice, with highest expression in the leaf
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	transcription factor	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	In this study we identified one MYB transcription factor gene OsJAMyb from rice landrace Heikezijing, which encodes a protein with 283 amino-acid residues belonging to R2R3-type MYB transcription factor family
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	blast	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	After inoculation with the blast isolate Hoku1, the expression of OsJAMyb was more rapidly and strongly induced in the seedlings of blast-resistant Heikezijing compared with that in the blast-susceptible landrace Suyunuo
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	blast	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	The OsJAMyb overexpressing transgenic lines (T3 generation) in Suyunuo showed increased resistance to blast infection with less lesion number in inoculated leaves compared with non-transgenic control plants
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	blast	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	The results indicate that OsJAMyb might be involved in the resistance to blast infection in rice
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	lesion	OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice	The OsJAMyb overexpressing transgenic lines (T3 generation) in Suyunuo showed increased resistance to blast infection with less lesion number in inoculated leaves compared with non-transgenic control plants
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	transcription factor	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	Through combined analysis of differential expression and annotations of the predicted genes within qBBR11-4 between two sets of rice accessions selected based on haplotypes and disease phenotypes, we identified the transcription factor OsMYB21 as the candidate gene for qBBR11-4
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	resistance	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	resistance	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	The OsMYB21 overexpressing plants exhibited decreased resistance to bacterial blight, accompanied with down-regulation of several defense-related genes compared with the wild-type plants
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	resistance	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	Conclusion: The results suggest that OsMYB21 negatively regulates bacterial blight resistance in rice, and this gene can be a promising target in rice breeding by using the gene editing method
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	disease	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	Through combined analysis of differential expression and annotations of the predicted genes within qBBR11-4 between two sets of rice accessions selected based on haplotypes and disease phenotypes, we identified the transcription factor OsMYB21 as the candidate gene for qBBR11-4
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	blight	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	blight	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	Conclusion: The results suggest that OsMYB21 negatively regulates bacterial blight resistance in rice, and this gene can be a promising target in rice breeding by using the gene editing method
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	bacterial blight	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	bacterial blight	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	The OsMYB21 overexpressing plants exhibited decreased resistance to bacterial blight, accompanied with down-regulation of several defense-related genes compared with the wild-type plants
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	bacterial blight	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	Conclusion: The results suggest that OsMYB21 negatively regulates bacterial blight resistance in rice, and this gene can be a promising target in rice breeding by using the gene editing method
JAmyb|OsJAmyb|OsMYB21	Os11g0684000	LOC_Os11g45740	breeding	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice	Conclusion: The results suggest that OsMYB21 negatively regulates bacterial blight resistance in rice, and this gene can be a promising target in rice breeding by using the gene editing method
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	seedling	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	) gene, homologous to a sorghum pathogenesis-related class 10 protein gene, was cloned from a cDNA library prepared from 2-week-old jasmonic acid-treated rice seedling leaves, and named as JIOsPR10 (jasmonate inducible)
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	seedling	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	root	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	Western blots revealed that the JIOsPR10 protein was expressed in developmental tissues, including in flower and root
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	root	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	Using immunohistochemical techniques, we determined that expression of JIOsPR10 was localized to the palea of flower, in the exodermis, and inner part of the endodermis of the root
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	jasmonic acid	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	) gene, homologous to a sorghum pathogenesis-related class 10 protein gene, was cloned from a cDNA library prepared from 2-week-old jasmonic acid-treated rice seedling leaves, and named as JIOsPR10 (jasmonate inducible)
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	palea	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	Using immunohistochemical techniques, we determined that expression of JIOsPR10 was localized to the palea of flower, in the exodermis, and inner part of the endodermis of the root
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	jasmonic acid	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	We previously reported that rice blast fungus or jasmonic acid induced the expression of rice pathogenesis-related class 10 (JIOsPR10) proteins (Kim et al
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	ethylene	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	Further expression analysis revealed that the signaling components of defense/stress pathways, jasmonate, salicylate, and H(2)O(2) significantly up-regulated the JIOsPR10 mRNA over the cut control, whereas two other stress regulators, ethylene and abscisic acid, failed to induce its expression
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	jasmonic	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	We previously reported that rice blast fungus or jasmonic acid induced the expression of rice pathogenesis-related class 10 (JIOsPR10) proteins (Kim et al
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	blast	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	We previously reported that rice blast fungus or jasmonic acid induced the expression of rice pathogenesis-related class 10 (JIOsPR10) proteins (Kim et al
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	blast	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	Finally, the blast pathogen (Magnaporthe grisea) also specifically elicited the accumulation of JIOsPR10 mRNA in leaves
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	flower	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	Western blots revealed that the JIOsPR10 protein was expressed in developmental tissues, including in flower and root
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	flower	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	Using immunohistochemical techniques, we determined that expression of JIOsPR10 was localized to the palea of flower, in the exodermis, and inner part of the endodermis of the root
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	jasmonic	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	) gene, homologous to a sorghum pathogenesis-related class 10 protein gene, was cloned from a cDNA library prepared from 2-week-old jasmonic acid-treated rice seedling leaves, and named as JIOsPR10 (jasmonate inducible)
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	defense	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	Taken together, we hypothesize that the JIOsPR10 protein possesses RNase activity that is sensitive to DTT, suggesting the importance of the disulfide bonding between cysteine residues and that it might play a role in constitutive self-defense mechanisms in plants against biotic and abiotic stresses
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	biotic stress	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	Taken together, we hypothesize that the JIOsPR10 protein possesses RNase activity that is sensitive to DTT, suggesting the importance of the disulfide bonding between cysteine residues and that it might play a role in constitutive self-defense mechanisms in plants against biotic and abiotic stresses
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	biotic stress	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	abiotic stress	The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity	Taken together, we hypothesize that the JIOsPR10 protein possesses RNase activity that is sensitive to DTT, suggesting the importance of the disulfide bonding between cysteine residues and that it might play a role in constitutive self-defense mechanisms in plants against biotic and abiotic stresses
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	defense	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	Further expression analysis revealed that the signaling components of defense/stress pathways, jasmonate, salicylate, and H(2)O(2) significantly up-regulated the JIOsPR10 mRNA over the cut control, whereas two other stress regulators, ethylene and abscisic acid, failed to induce its expression
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	defense	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	Induction of the JIOsPR10 gene expression by signaling molecules, PP inhibitors and pathogen attack, strongly indicate a role for this novel gene in rice self-defense/stress response(s)
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	jasmonate	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	) gene, homologous to a sorghum pathogenesis-related class 10 protein gene, was cloned from a cDNA library prepared from 2-week-old jasmonic acid-treated rice seedling leaves, and named as JIOsPR10 (jasmonate inducible)
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	jasmonate	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	Further expression analysis revealed that the signaling components of defense/stress pathways, jasmonate, salicylate, and H(2)O(2) significantly up-regulated the JIOsPR10 mRNA over the cut control, whereas two other stress regulators, ethylene and abscisic acid, failed to induce its expression
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	jasmonate	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	root	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Constitutive over-expression JIOsPR10 in rice promoted shoot and root development in transgenic plants, however, their productivity was unaltered
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	shoot	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Constitutive over-expression JIOsPR10 in rice promoted shoot and root development in transgenic plants, however, their productivity was unaltered
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	development	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Constitutive over-expression JIOsPR10 in rice promoted shoot and root development in transgenic plants, however, their productivity was unaltered
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	defense	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	A comparative proteomic profiling of wild type and transgenic plants showed that overexpression of JIOsPR10 led to the differential modulation of several proteins mainly related with oxidative stresses, carbohydrate metabolism, and plant defense
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	oxidative stress	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	A comparative proteomic profiling of wild type and transgenic plants showed that overexpression of JIOsPR10 led to the differential modulation of several proteins mainly related with oxidative stresses, carbohydrate metabolism, and plant defense
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	drought	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Semi-quantitative RT-PCR analysis showed up-regulation of JIOsPR10 under salt and drought stress conditions
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	salt	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Semi-quantitative RT-PCR analysis showed up-regulation of JIOsPR10 under salt and drought stress conditions
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	tolerance	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Taken together, our findings suggest that JIOsPR10 plays important roles in biotic and abiotic stresses tolerance probably by activation of stress related proteins
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	oxidative	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	A comparative proteomic profiling of wild type and transgenic plants showed that overexpression of JIOsPR10 led to the differential modulation of several proteins mainly related with oxidative stresses, carbohydrate metabolism, and plant defense
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	abiotic stress	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Taken together, our findings suggest that JIOsPR10 plays important roles in biotic and abiotic stresses tolerance probably by activation of stress related proteins
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	root development	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Constitutive over-expression JIOsPR10 in rice promoted shoot and root development in transgenic plants, however, their productivity was unaltered
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	stress	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Semi-quantitative RT-PCR analysis showed up-regulation of JIOsPR10 under salt and drought stress conditions
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	stress	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Taken together, our findings suggest that JIOsPR10 plays important roles in biotic and abiotic stresses tolerance probably by activation of stress related proteins
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	biotic stress	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Taken together, our findings suggest that JIOsPR10 plays important roles in biotic and abiotic stresses tolerance probably by activation of stress related proteins
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	drought stress	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Semi-quantitative RT-PCR analysis showed up-regulation of JIOsPR10 under salt and drought stress conditions
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	drought stress	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Semi-quantitative RT-PCR analysis showed up-regulation of JIOsPR10 under salt and drought stress conditions
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	defence	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19	OsWRKY19 binds to the promoter of OsPR10 to activate the defence response
JIOsPR10|OsPR10	Os03g0300400	LOC_Os03g18850	defence response	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19	OsWRKY19 binds to the promoter of OsPR10 to activate the defence response
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	panicle	Regulation of Histone Methylation and Reprogramming of Gene Expression in the Rice Inflorescence Meristem.	Double knockdown/knockout of SDG711 and JMJ703 further reduced panicle size
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	panicle size	Regulation of Histone Methylation and Reprogramming of Gene Expression in the Rice Inflorescence Meristem.	Double knockdown/knockout of SDG711 and JMJ703 further reduced panicle size
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	drought	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	Transgenic rice of over-expressing OsJMJ703 is sensitive to drought stress, whereas knocking down OsJMJ703 enhances the tolerance to drought stress
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	tolerance	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	Transgenic rice of over-expressing OsJMJ703 is sensitive to drought stress, whereas knocking down OsJMJ703 enhances the tolerance to drought stress
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	abiotic stress	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	In addition, OsJMJ703 is involved in abiotic stress
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	stress	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	In addition, OsJMJ703 is involved in abiotic stress
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	stress	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	Transgenic rice of over-expressing OsJMJ703 is sensitive to drought stress, whereas knocking down OsJMJ703 enhances the tolerance to drought stress
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	biotic stress	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	In addition, OsJMJ703 is involved in abiotic stress
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	flowering time	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	Furthermore, over-expression of OsJMJ703 influenced the type of rice panicle, and knock-down of the expression of OsJMJ703 showed an earlier flowering time in rice
JMJ703|OsJMJ703	Os05g0196500	LOC_Os05g10770	drought stress	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	Transgenic rice of over-expressing OsJMJ703 is sensitive to drought stress, whereas knocking down OsJMJ703 enhances the tolerance to drought stress
JMJ704	Os05g0302300	LOC_Os05g23670	resistance	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.
JMJ704	Os05g0302300	LOC_Os05g23670	resistance	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	Further functional characterization of JmjC mutants revealed that JMJ704 is a positive regulator of rice bacterial blight resistance as the jmj704 became more susceptible to Xoo than the wild-type
JMJ704	Os05g0302300	LOC_Os05g23670	resistance	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	JMJ704 may be a universal switch controlling multiple genes of the bacterial blight resistance pathway
JMJ704	Os05g0302300	LOC_Os05g23670	defense	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.
JMJ704	Os05g0302300	LOC_Os05g23670	defense	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	Moreover, JMJ704 suppressed the transcription of the rice defense negative regulator genes, such as NRR, OsWRKY62 and Os-11N3, by reducing the activation marks H3K4me2/3 on them
JMJ704	Os05g0302300	LOC_Os05g23670	defense	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	JMJ704 positively regulates rice defense by epigenetically suppressing master negative defense regulators, presenting a novel mechanism distinct from its homolog JMJ705 which also positively regulates rice defense but via activating positive defense regulators
JMJ704	Os05g0302300	LOC_Os05g23670	defense response	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.
JMJ704	Os05g0302300	LOC_Os05g23670	disease	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.
JMJ704	Os05g0302300	LOC_Os05g23670	disease resistance	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.
JMJ704	Os05g0302300	LOC_Os05g23670	xoo	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	Further functional characterization of JmjC mutants revealed that JMJ704 is a positive regulator of rice bacterial blight resistance as the jmj704 became more susceptible to Xoo than the wild-type
JMJ704	Os05g0302300	LOC_Os05g23670	blight	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	Further functional characterization of JmjC mutants revealed that JMJ704 is a positive regulator of rice bacterial blight resistance as the jmj704 became more susceptible to Xoo than the wild-type
JMJ704	Os05g0302300	LOC_Os05g23670	blight	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	JMJ704 may be a universal switch controlling multiple genes of the bacterial blight resistance pathway
JMJ704	Os05g0302300	LOC_Os05g23670	bacterial blight	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	Further functional characterization of JmjC mutants revealed that JMJ704 is a positive regulator of rice bacterial blight resistance as the jmj704 became more susceptible to Xoo than the wild-type
JMJ704	Os05g0302300	LOC_Os05g23670	bacterial blight	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	JMJ704 may be a universal switch controlling multiple genes of the bacterial blight resistance pathway
JMJ705	Os01g0907400	LOC_Os01g67970	biotic stress	Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice	The results suggest that JMJ705 is a biotic stress-responsive H3K27me2/3 demethylase that may remove H3K27me3 from marked defense-related genes and increase their basal and induced expression during pathogen infection
JMJ705	Os01g0907400	LOC_Os01g67970	jasmonate	Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice	Further analysis revealed that JMJ705 is involved in methyl jasmonate-induced dynamic removal of H3K27me3 and gene activation
JMJ705	Os01g0907400	LOC_Os01g67970	defense	Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice	The results suggest that JMJ705 is a biotic stress-responsive H3K27me2/3 demethylase that may remove H3K27me3 from marked defense-related genes and increase their basal and induced expression during pathogen infection
JMJ705	Os01g0907400	LOC_Os01g67970	defense	Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice	Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice
JMJ705	Os01g0907400	LOC_Os01g67970	methyl jasmonate	Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance	We revealed that DGC7 is regulated directly by JMJ705 through methyl jasmonate-mediated epigenetic control3
JMJ705	Os01g0907400	LOC_Os01g67970	transcription factor	SnRK1 stimulates the histone H3K27me3 demethylase JMJ705 to regulate a transcriptional switch to control energy homeostasis	Further analysis revealed that JMJ705 directly targets a set of low energy stress-responsive transcription factor genes
JMJ705	Os01g0907400	LOC_Os01g67970	tolerance	SnRK1 stimulates the histone H3K27me3 demethylase JMJ705 to regulate a transcriptional switch to control energy homeostasis	In this work, we show that the rice histone H3K27me3 demethylase JMJ705 is required for low energy stress tolerance in rice plants
JMJ705	Os01g0907400	LOC_Os01g67970	stress	SnRK1 stimulates the histone H3K27me3 demethylase JMJ705 to regulate a transcriptional switch to control energy homeostasis	In this work, we show that the rice histone H3K27me3 demethylase JMJ705 is required for low energy stress tolerance in rice plants
JMJ705	Os01g0907400	LOC_Os01g67970	homeostasis	SnRK1 stimulates the histone H3K27me3 demethylase JMJ705 to regulate a transcriptional switch to control energy homeostasis	SnRK1 stimulates the histone H3K27me3 demethylase JMJ705 to regulate a transcriptional switch to control energy homeostasis
JMJ705	Os01g0907400	LOC_Os01g67970	stress tolerance	SnRK1 stimulates the histone H3K27me3 demethylase JMJ705 to regulate a transcriptional switch to control energy homeostasis	In this work, we show that the rice histone H3K27me3 demethylase JMJ705 is required for low energy stress tolerance in rice plants
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	floral	Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development	Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	flower	Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development	Gene expression and histone modification analysis indicates that JMJ706 regulates a subset of flower development regulatory genes
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	flower	Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development	Taken together, our data suggest that rice JMJ706 encodes a heterochromatin-associated H3K9 demethylase involved in the regulation of flower development in rice
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	development	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.	OsGRF6/OsGRF10 localized to the nucleus, and electrophoretic mobility shift assays revealed that both OsGRF6 and OsGRF10 bind the GA response element in the promoters of OsJMJ706 and OsCR4, which were reported to participate in the regulation of floral organ development
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	floral	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	floral	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.	OsGRF6/OsGRF10 localized to the nucleus, and electrophoretic mobility shift assays revealed that both OsGRF6 and OsGRF10 bind the GA response element in the promoters of OsJMJ706 and OsCR4, which were reported to participate in the regulation of floral organ development
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	ga	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.	OsGRF6/OsGRF10 localized to the nucleus, and electrophoretic mobility shift assays revealed that both OsGRF6 and OsGRF10 bind the GA response element in the promoters of OsJMJ706 and OsCR4, which were reported to participate in the regulation of floral organ development
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	floral organ	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	floral organ	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.	OsGRF6/OsGRF10 localized to the nucleus, and electrophoretic mobility shift assays revealed that both OsGRF6 and OsGRF10 bind the GA response element in the promoters of OsJMJ706 and OsCR4, which were reported to participate in the regulation of floral organ development
JMJ706|OsJMJ706	Os10g0577600	LOC_Os10g42690	GA	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.	OsGRF6/OsGRF10 localized to the nucleus, and electrophoretic mobility shift assays revealed that both OsGRF6 and OsGRF10 bind the GA response element in the promoters of OsJMJ706 and OsCR4, which were reported to participate in the regulation of floral organ development
JMJ710	Os11g0572800	LOC_Os11g36450	drought	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.
JMJ710	Os11g0572800	LOC_Os11g36450	drought	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	 Overexpression of JMJ710 causes a drought-sensitive phenotype, while RNAi and clustered regularly interspaced short palindromic repeats (CRISPR)-knockout mutant lines show drought tolerance
JMJ710	Os11g0572800	LOC_Os11g36450	drought	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	 Under drought stress, JMJ710 is downregulated and the expression of MYB48-1 increases, and the subsequent activation of its downstream drought-responsive genes leads to drought tolerance
JMJ710	Os11g0572800	LOC_Os11g36450	tolerance	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.
JMJ710	Os11g0572800	LOC_Os11g36450	tolerance	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	 Overexpression of JMJ710 causes a drought-sensitive phenotype, while RNAi and clustered regularly interspaced short palindromic repeats (CRISPR)-knockout mutant lines show drought tolerance
JMJ710	Os11g0572800	LOC_Os11g36450	tolerance	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	 Under drought stress, JMJ710 is downregulated and the expression of MYB48-1 increases, and the subsequent activation of its downstream drought-responsive genes leads to drought tolerance
JMJ710	Os11g0572800	LOC_Os11g36450	drought tolerance	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.
JMJ710	Os11g0572800	LOC_Os11g36450	drought tolerance	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	 Overexpression of JMJ710 causes a drought-sensitive phenotype, while RNAi and clustered regularly interspaced short palindromic repeats (CRISPR)-knockout mutant lines show drought tolerance
JMJ710	Os11g0572800	LOC_Os11g36450	drought tolerance	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	 Under drought stress, JMJ710 is downregulated and the expression of MYB48-1 increases, and the subsequent activation of its downstream drought-responsive genes leads to drought tolerance
JMJ710	Os11g0572800	LOC_Os11g36450	drought stress	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	 Under drought stress, JMJ710 is downregulated and the expression of MYB48-1 increases, and the subsequent activation of its downstream drought-responsive genes leads to drought tolerance
Kala4|OsS1	Os04g0557500	LOC_Os04g47059	grain	The Birth of a Black Rice Gene and Its Local Spread by Introgression.	Here, we show that the black grain trait originated from ectopic expression of the Kala4 bHLH gene due to rearrangement in the promoter region
KAO	Os06g0110000	LOC_Os06g02019	ga	An overview of gibberellin metabolism enzyme genes and their related mutants in rice	To enhance our understanding of GA metabolism in rice (Oryza sativa), we intensively screened and identified 29 candidate genes encoding the following GA metabolic enzymes using all available rice DNA databases: ent-copalyl diphosphate synthase (CPS), ent-kaurene synthase (KS), ent-kaurene oxidase (KO), ent-kaurenoic acid oxidase (KAO), GA 20-oxidase (GA20ox), GA 3-oxidase (GA3ox), and GA 2-oxidase (GA2ox)
KNAT7	Os03g0123500	LOC_Os03g03164	growth	A Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion And Wall Stiffness.	Biochemical and gene expression analyses revealed that rice KNAT7 interacts with a secondary wall key regulator, NAC31, and a cell growth master regulator, GROWTH-REGULATING FACTOR 4 (GRF4)
KNAT7	Os03g0123500	LOC_Os03g03164	resistance	A Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion And Wall Stiffness.	A loss-of-function mutation in KNAT7 enhanced wall mechanical strength and cell expansion, resulting in improved lodging resistance and grain size
KNAT7	Os03g0123500	LOC_Os03g03164	grain	A Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion And Wall Stiffness.	A loss-of-function mutation in KNAT7 enhanced wall mechanical strength and cell expansion, resulting in improved lodging resistance and grain size
KNAT7	Os03g0123500	LOC_Os03g03164	grain size	A Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion And Wall Stiffness.	A loss-of-function mutation in KNAT7 enhanced wall mechanical strength and cell expansion, resulting in improved lodging resistance and grain size
KNAT7	Os03g0123500	LOC_Os03g03164	cell wall	A Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion And Wall Stiffness.	Overexpression of KNAT7 gave rise to the opposite phenotypes, with plants having weaker cell walls and smaller grains
KNAT7	Os03g0123500	LOC_Os03g03164	lodging	A Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion And Wall Stiffness.	A loss-of-function mutation in KNAT7 enhanced wall mechanical strength and cell expansion, resulting in improved lodging resistance and grain size
KNAT7	Os03g0123500	LOC_Os03g03164	lodging resistance	A Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion And Wall Stiffness.	A loss-of-function mutation in KNAT7 enhanced wall mechanical strength and cell expansion, resulting in improved lodging resistance and grain size
KOB1	Os02g0817500	LOC_Os02g57240	sheath	Molecular cloning and expression characterization of a rice K+ channel beta subunit	Leaf sheaths were found to contain higher levels of KOB1 protein than the blade portions of leaves
KOB1	Os02g0817500	LOC_Os02g57240	growth	Ectopic expression of the K+ channel beta subunits from Puccinellia tenuiflora (KPutB1) and rice (KOB1) alters K+ homeostasis of yeast and Arabidopsis	Yeast co-expressing PutAKT1 and the beta subunits (KPutB1 and KOB1) had better growth and higher K+-uptake ability than yeast expressing PutAKT1 alone
KOB1	Os02g0817500	LOC_Os02g57240	growth	Ectopic expression of the K+ channel beta subunits from Puccinellia tenuiflora (KPutB1) and rice (KOB1) alters K+ homeostasis of yeast and Arabidopsis	In contrast, yeast co-expressing the beta subunits (KPutB1 and KOB1) with OsAKT1 had slower growth and lower K+ uptake than yeast expressing OsAKT1 alone
KOB1	Os02g0817500	LOC_Os02g57240	leaf	Molecular cloning and expression characterization of a rice K+ channel beta subunit	Later-developing leaves on a rice plant were found to contain increasing levels of the protein with the flag leaf having the highest titer of KOB1
KOB1	Os02g0817500	LOC_Os02g57240	leaf	Molecular cloning and expression characterization of a rice K+ channel beta subunit	Leaf sheaths were found to contain higher levels of KOB1 protein than the blade portions of leaves
KOB1	Os02g0817500	LOC_Os02g57240	root	Molecular cloning and expression characterization of a rice K+ channel beta subunit	Expression studies indicated that KOB1 protein is more abundant in leaves than in either reproductive structures or roots
KOB1	Os02g0817500	LOC_Os02g57240	homeostasis	Ectopic expression of the K+ channel beta subunits from Puccinellia tenuiflora (KPutB1) and rice (KOB1) alters K+ homeostasis of yeast and Arabidopsis	Ectopic expression of the K+ channel beta subunits from Puccinellia tenuiflora (KPutB1) and rice (KOB1) alters K+ homeostasis of yeast and Arabidopsis
KOB1	Os02g0817500	LOC_Os02g57240	reproductive	Molecular cloning and expression characterization of a rice K+ channel beta subunit	Expression studies indicated that KOB1 protein is more abundant in leaves than in either reproductive structures or roots
KRP1	Os02g0762400	LOC_Os02g52480	leaf development	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	Phenotypic analysis revealed that overexpressed KRP1 reduced cell production during leaf development
KRP1	Os02g0762400	LOC_Os02g52480	seed development	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice
KRP1	Os02g0762400	LOC_Os02g52480	cell cycle	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	Also, spatial and temporal transcript detection in developing seeds suggests that Orysa;KRP1 plays an important role in the exit from the mitotic cell cycle during rice grain formation
KRP1	Os02g0762400	LOC_Os02g52480	leaf	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	However, phyB mutants exhibited reduced total leaf area per plant, which was probably due to a reduction in the total number of cells per leaf caused by enhanced expression of Orysa;KRP1 and Orysa;KRP4 (encoding inhibitors of cyclin-dependent kinase complex activity) in the phyB mutants
KRP1	Os02g0762400	LOC_Os02g52480	leaf	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	Phenotypic analysis revealed that overexpressed KRP1 reduced cell production during leaf development
KRP1	Os02g0762400	LOC_Os02g52480	endosperm	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	Sectioning through the overexpressed KRP1 seeds showed that KRP overproduction disturbed the production of endosperm cells
KRP1	Os02g0762400	LOC_Os02g52480	endosperm	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	The decrease in the number of fully formed seeds was accompanied by a drop in the endoreduplication of endosperm cells, pointing toward a role of KRP1 in connecting endocycle with endosperm development
KRP1	Os02g0762400	LOC_Os02g52480	seed	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	Furthermore, Orysa;KRP1 overexpression dramatically reduced seed filling
KRP1	Os02g0762400	LOC_Os02g52480	seed	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	Sectioning through the overexpressed KRP1 seeds showed that KRP overproduction disturbed the production of endosperm cells
KRP1	Os02g0762400	LOC_Os02g52480	seed	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	The decrease in the number of fully formed seeds was accompanied by a drop in the endoreduplication of endosperm cells, pointing toward a role of KRP1 in connecting endocycle with endosperm development
KRP1	Os02g0762400	LOC_Os02g52480	seed	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	Also, spatial and temporal transcript detection in developing seeds suggests that Orysa;KRP1 plays an important role in the exit from the mitotic cell cycle during rice grain formation
KRP1	Os02g0762400	LOC_Os02g52480	seed	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice
KRP1	Os02g0762400	LOC_Os02g52480	grain	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice	Also, spatial and temporal transcript detection in developing seeds suggests that Orysa;KRP1 plays an important role in the exit from the mitotic cell cycle during rice grain formation
KRP2	Os06g0213700	LOC_Os06g11050	grain	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).
KRP2	Os06g0213700	LOC_Os06g11050	grain	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	seedling	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	development	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	seed	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).
KRP2	Os06g0213700	LOC_Os06g11050	seed	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	seed germination	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).
KRP2	Os06g0213700	LOC_Os06g11050	seed germination	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	Kinase	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).
KRP2	Os06g0213700	LOC_Os06g11050	grain filling	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).
KRP2	Os06g0213700	LOC_Os06g11050	grain filling	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	seed development	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	cell proliferation	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	grain weight	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	kinase	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).
KRP2	Os06g0213700	LOC_Os06g11050	seedling growth	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP2	Os06g0213700	LOC_Os06g11050	seed length	Cyclin-Dependent Kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (Oryza sativa L.).	KRP1 overexpression transgenic lines (OxKRP1), krp2 single mutant (crkrp2), and krp1/krp2 double mutant (crkrp1/krp2) all exhibited significantly smaller seed width, seed length, and reduced grain weight, with impaired seed germination and retarded early seedling growth, suggesting that disturbing the normal steady state of KRP1 or KRP2 blocks seed development partly through inhibiting cell proliferation and enlargement during grain filling and seed germination
KRP3	Os11g0614800	LOC_Os11g40030	cell cycle	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm	These data suggest that Orysa;KRP3 is involved in cell cycle control of syncytial endosperm
KRP3	Os11g0614800	LOC_Os11g40030	cell cycle	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm
KRP3	Os11g0614800	LOC_Os11g40030	endosperm	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm	In situ hybridization analysis revealed that Orysa;KRP3 is expressed in multinucleate syncytial endosperm at 2 DAF, but not in cellularized endosperm at 3 DAF
KRP3	Os11g0614800	LOC_Os11g40030	endosperm	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm	These data suggest that Orysa;KRP3 is involved in cell cycle control of syncytial endosperm
KRP3	Os11g0614800	LOC_Os11g40030	endosperm	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm
KRP3	Os11g0614800	LOC_Os11g40030	cell division	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm	Orysa;KRP3 was able to rescue yeast premature cell division due to the dominant positive expression of mutant rice CDKA;1 indicating that Orysa;KRP3 inhibited rice CDK
KS2|OsKS2|OsKSL2	Os04g0612000	LOC_Os04g52240	floral	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis	The expression pattern of OsKS2 in wild-type cv Dongjin, showed that it is expressed in all organs, most prominently in the stem and floral organs
KS2|OsKS2|OsKSL2	Os04g0612000	LOC_Os04g52240	ga	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis	The putative OsKS2 gene was a chromosome 4-located ent-kaurene synthase (KS), encoding the enzyme that catalyses an early step of the GA biosynthesis pathway
KS2|OsKS2|OsKSL2	Os04g0612000	LOC_Os04g52240	dwarf	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis	Reverse transcription PCR analyses of 22 candidate genes related to the gibberellin (GA) biosynthesis pathway revealed that among 22 candidate genes tested, a dwarf mutant transcript was not expressed only in one OsKS2 gene
KS2|OsKS2|OsKSL2	Os04g0612000	LOC_Os04g52240	dwarf	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis	We propose that dwarfism in this mutant is caused by a point mutation in OsKS2, which plays a significant role in growth and development of higher plants
KS2|OsKS2|OsKSL2	Os04g0612000	LOC_Os04g52240	dwarf	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis	Further investigation on OsKS2 and other OsKS-like proteins is underway and may yield better understanding of the putative role of OsKS in severe dwarf mutants
KS2|OsKS2|OsKSL2	Os04g0612000	LOC_Os04g52240	gibberellin	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis	Reverse transcription PCR analyses of 22 candidate genes related to the gibberellin (GA) biosynthesis pathway revealed that among 22 candidate genes tested, a dwarf mutant transcript was not expressed only in one OsKS2 gene
KS2|OsKS2|OsKSL2	Os04g0612000	LOC_Os04g52240	stem	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis	The expression pattern of OsKS2 in wild-type cv Dongjin, showed that it is expressed in all organs, most prominently in the stem and floral organs
KS2|OsKS2|OsKSL2	Os04g0612000	LOC_Os04g52240	growth	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis	We propose that dwarfism in this mutant is caused by a point mutation in OsKS2, which plays a significant role in growth and development of higher plants
L-2	Os03g0738600	LOC_Os03g52860	seedling	cDNA cloning of rice lipoxygenase L-2 and characterization using an active enzyme expressed from the cDNA in Escherichia coli	A full-length cDNA of rice lipoxygenase L-2 was cloned from 3-day old seedlings
L-2	Os03g0738600	LOC_Os03g52860	seedling	cDNA cloning of rice lipoxygenase L-2 and characterization using an active enzyme expressed from the cDNA in Escherichia coli	The enzyme had the same properties as the L-2 enzyme that was isolated from seedlings, but differed from the lipoxygenase L-3 isolated from mature plants
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	auxin	LAZY1 controls rice shoot gravitropism through regulating polar auxin transport	We show that LA1, a novel grass-specific gene, is temporally and spatially expressed, and plays a negative role in polar auxin transport (PAT)
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller	LAZY1 controls rice shoot gravitropism through regulating polar auxin transport	Here we report the cloning of the LAZY1 (LA1) gene that regulates shoot gravitropism by which the rice tiller angle is controlled
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller	LAZY1 controls rice shoot gravitropism through regulating polar auxin transport	Loss-of-function of LA1 enhances PAT greatly and thus alters the endogenous IAA distribution in shoots, leading to the reduced gravitropism, and therefore the tiller-spreading phenotype of rice plants
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	iaa	LAZY1 controls rice shoot gravitropism through regulating polar auxin transport	Loss-of-function of LA1 enhances PAT greatly and thus alters the endogenous IAA distribution in shoots, leading to the reduced gravitropism, and therefore the tiller-spreading phenotype of rice plants
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot	LAZY1 controls rice shoot gravitropism through regulating polar auxin transport	Here we report the cloning of the LAZY1 (LA1) gene that regulates shoot gravitropism by which the rice tiller angle is controlled
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot	LAZY1 controls rice shoot gravitropism through regulating polar auxin transport	Loss-of-function of LA1 enhances PAT greatly and thus alters the endogenous IAA distribution in shoots, leading to the reduced gravitropism, and therefore the tiller-spreading phenotype of rice plants
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller angle	LAZY1 controls rice shoot gravitropism through regulating polar auxin transport	Here we report the cloning of the LAZY1 (LA1) gene that regulates shoot gravitropism by which the rice tiller angle is controlled
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot gravitropism	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is able to rescue the tiller angle and shoot gravitropism defects observed in la1-SN
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot gravitropism	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is required to regulate the expression of auxin transporters and signaling factors that control shoot gravitropism and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot gravitropism	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	The results show that LA1 may be involved in the nucleosome and chromatin assembly, and protein-DNA interactions to control gene expression, shoot gravitropism, and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot gravitropism	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	Our results provide new insight into the mechanisms whereby LA1 controls shoot gravitropism and tiller angle in rice
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is able to rescue the tiller angle and shoot gravitropism defects observed in la1-SN
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is required to regulate the expression of auxin transporters and signaling factors that control shoot gravitropism and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	The results show that LA1 may be involved in the nucleosome and chromatin assembly, and protein-DNA interactions to control gene expression, shoot gravitropism, and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	shoot	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	Our results provide new insight into the mechanisms whereby LA1 controls shoot gravitropism and tiller angle in rice
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	auxin	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is required to regulate the expression of auxin transporters and signaling factors that control shoot gravitropism and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is able to rescue the tiller angle and shoot gravitropism defects observed in la1-SN
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is required to regulate the expression of auxin transporters and signaling factors that control shoot gravitropism and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	The results show that LA1 may be involved in the nucleosome and chromatin assembly, and protein-DNA interactions to control gene expression, shoot gravitropism, and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	Our results provide new insight into the mechanisms whereby LA1 controls shoot gravitropism and tiller angle in rice
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	auxin transport	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is required to regulate the expression of auxin transporters and signaling factors that control shoot gravitropism and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller angle	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is able to rescue the tiller angle and shoot gravitropism defects observed in la1-SN
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller angle	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	LA1 is required to regulate the expression of auxin transporters and signaling factors that control shoot gravitropism and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller angle	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	The results show that LA1 may be involved in the nucleosome and chromatin assembly, and protein-DNA interactions to control gene expression, shoot gravitropism, and tiller angle
LA1|LAZY1	Os11g0490600	LOC_Os11g29840	tiller angle	LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice	Our results provide new insight into the mechanisms whereby LA1 controls shoot gravitropism and tiller angle in rice
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	domestication	LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.	Haplotype analysis revealed that the laba1 allele originated in the japonica subspecies and moved into the indica gene pool via introgression, suggesting that humans selected for this locus in early rice domestication
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	domestication	LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.	Identification of LABA1 provides new insights into rice domestication and also sheds light on the molecular mechanism underlying awn development
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	development	LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.	Identification of LABA1 provides new insights into rice domestication and also sheds light on the molecular mechanism underlying awn development
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	awn	LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.	A frame-shift deletion in LABA1 of cultivated rice reduces the cytokinin concentration in awn primordia, disrupting barb formation and awn elongation
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	awn	LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.	Identification of LABA1 provides new insights into rice domestication and also sheds light on the molecular mechanism underlying awn development
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	cytokinin	LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.	A frame-shift deletion in LABA1 of cultivated rice reduces the cytokinin concentration in awn primordia, disrupting barb formation and awn elongation
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	panicle	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	The near-isogenic line harboring a wild allele An-2 in the genetic background of the awnless indica Guangluai 4 shows that An-2 promote awn elongation by enhancing cell division, but decreases grain production by reducing grains per panicle and tillers per plant
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	grain	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	grain	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	The near-isogenic line harboring a wild allele An-2 in the genetic background of the awnless indica Guangluai 4 shows that An-2 promote awn elongation by enhancing cell division, but decreases grain production by reducing grains per panicle and tillers per plant
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	grain	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	We reveal that a genetic variation in the An-2 locus has a large impact on reducing awn length and increasing tiller and grain numbers in domesticated rice
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	grain	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	We therefore proposed that the selection of the genetic variation in An-2 was due to reduced awn length and increased grain yield in cultivated rice
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	tiller	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	We reveal that a genetic variation in the An-2 locus has a large impact on reducing awn length and increasing tiller and grain numbers in domesticated rice
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	grains per panicle	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	The near-isogenic line harboring a wild allele An-2 in the genetic background of the awnless indica Guangluai 4 shows that An-2 promote awn elongation by enhancing cell division, but decreases grain production by reducing grains per panicle and tillers per plant
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	grain yield	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	We therefore proposed that the selection of the genetic variation in An-2 was due to reduced awn length and increased grain yield in cultivated rice
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	grain number	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	We reveal that a genetic variation in the An-2 locus has a large impact on reducing awn length and increasing tiller and grain numbers in domesticated rice
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	awn	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	awn	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	The near-isogenic line harboring a wild allele An-2 in the genetic background of the awnless indica Guangluai 4 shows that An-2 promote awn elongation by enhancing cell division, but decreases grain production by reducing grains per panicle and tillers per plant
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	awn	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	We reveal that a genetic variation in the An-2 locus has a large impact on reducing awn length and increasing tiller and grain numbers in domesticated rice
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	awn	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	Expressional analysis demonstrates that An-1 regulates the formation of awn primordial, and An-2 promotes awn elongation
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	awn	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	We therefore proposed that the selection of the genetic variation in An-2 was due to reduced awn length and increased grain yield in cultivated rice
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	yield	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	We therefore proposed that the selection of the genetic variation in An-2 was due to reduced awn length and increased grain yield in cultivated rice
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	cell division	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	The near-isogenic line harboring a wild allele An-2 in the genetic background of the awnless indica Guangluai 4 shows that An-2 promote awn elongation by enhancing cell division, but decreases grain production by reducing grains per panicle and tillers per plant
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	cytokinin	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	cytokinin	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates Awn Length and Grain Production in Rice.	Here we report the cloning of An-2 gene, encoding a Lonely Guy Like protein 6 (OsLOGL6), which catalyzes the final step of cytokinin synthesis in O
LABA1|OsLOGL6|An-2	Os04g0518800	LOC_Os04g43840	awn	Natural alleles of GLA for grain length and awn development were differently domesticated in rice subspecies japonica and indica.	Analyses of minimum spanning trees and introgression regions demonstrated that An-1, an important gene for awn formation, was preferentially domesticated, and its mutation to an-1 was followed by GLA and An-2
LAIR	None	None	grain	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.
LAIR	None	None	grain	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	LAIR overexpression increases rice grain yield and upregulates the expression of several LRK genes
LAIR	None	None	grain	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Overall, this study reveals the role of lncRNA LAIR in regulating rice grain yield and lncRNAs may be useful targets for crop breeding
LAIR	None	None	grain yield	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.
LAIR	None	None	grain yield	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	LAIR overexpression increases rice grain yield and upregulates the expression of several LRK genes
LAIR	None	None	grain yield	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Overall, this study reveals the role of lncRNA LAIR in regulating rice grain yield and lncRNAs may be useful targets for crop breeding
LAIR	None	None	yield	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.
LAIR	None	None	yield	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	LAIR overexpression increases rice grain yield and upregulates the expression of several LRK genes
LAIR	None	None	yield	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Overall, this study reveals the role of lncRNA LAIR in regulating rice grain yield and lncRNAs may be useful targets for crop breeding
LAIR	None	None	breeding	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Overall, this study reveals the role of lncRNA LAIR in regulating rice grain yield and lncRNAs may be useful targets for crop breeding
LAIR	None	None	receptor kinase	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Here, we identify a lncRNA transcribed from the antisense strand of neighbouring gene LRK (leucine-rich repeat receptor kinase) cluster named LAIR (LRK Antisense Intergenic RNA)
LAR	Os03g0259400	LOC_Os03g15360	seed	Proanthocyanidin synthesis and expression of genes encoding leucoanthocyanidin reductase and anthocyanidin reductase in developing grape berries and grapevine leaves	The genes encoding LAR were expressed in developing fruit, particularly in seeds, but had low expression in leaves
LAR	Os03g0259400	LOC_Os03g15360	seed	Proanthocyanidin synthesis and expression of genes encoding leucoanthocyanidin reductase and anthocyanidin reductase in developing grape berries and grapevine leaves	The two LAR genes had different patterns of expression in skin and seeds
LAR	Os03g0259400	LOC_Os03g15360	seed	Proanthocyanidin synthesis and expression of genes encoding leucoanthocyanidin reductase and anthocyanidin reductase in developing grape berries and grapevine leaves	During grape ripening, PA levels decreased in both skin and seeds, and expression of genes encoding ANR and LAR were no longer detected
LAR	Os03g0259400	LOC_Os03g15360	leaf	Proanthocyanidin synthesis and expression of genes encoding leucoanthocyanidin reductase and anthocyanidin reductase in developing grape berries and grapevine leaves	We measured PA content and expression of genes encoding ANR, LAR, and leucoanthocyanidin dioxygenase in grape berries during development and in grapevine leaves, which accumulated PA throughout leaf expansion
LARGE1|OML4	Os02g0517531	LOC_Os02g31290	grain	Control of Grain Size and Weight by the GSK2-LARGE1/OML4 Pathway in Rice.	Here we report that the MEI2-LIKE PROTEIN 4 (OML4) encoded by the LARGE1 gene is phosphorylated by the GLYCOGEN SYNTHASE KINASE 2 (GSK2) and negatively controls grain size and weight in rice
LARGE1|OML4	Os02g0517531	LOC_Os02g31290	grain size	Control of Grain Size and Weight by the GSK2-LARGE1/OML4 Pathway in Rice.	Here we report that the MEI2-LIKE PROTEIN 4 (OML4) encoded by the LARGE1 gene is phosphorylated by the GLYCOGEN SYNTHASE KINASE 2 (GSK2) and negatively controls grain size and weight in rice
LARGE1|OML4	Os02g0517531	LOC_Os02g31290	Kinase	Control of Grain Size and Weight by the GSK2-LARGE1/OML4 Pathway in Rice.	Here we report that the MEI2-LIKE PROTEIN 4 (OML4) encoded by the LARGE1 gene is phosphorylated by the GLYCOGEN SYNTHASE KINASE 2 (GSK2) and negatively controls grain size and weight in rice
LARGE1|OML4	Os02g0517531	LOC_Os02g31290	kinase	Control of Grain Size and Weight by the GSK2-LARGE1/OML4 Pathway in Rice.	Here we report that the MEI2-LIKE PROTEIN 4 (OML4) encoded by the LARGE1 gene is phosphorylated by the GLYCOGEN SYNTHASE KINASE 2 (GSK2) and negatively controls grain size and weight in rice
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	panicle	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Here we report that LARGE2 encodes a HECT-domain E3 ubiquitin ligase OsUPL2 and regulates panicle size and grain number in rice
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	panicle	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	LARGE2 regulates panicle size and grain number by repressing meristematic activity
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	panicle	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Biochemical analyses show that LARGE2 physically associates with ABERRANT PANICLE ORGANIZATION1 (APO1) and APO2, two positive regulators of panicle size and grain number, and modulates their stabilities
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	panicle	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Here we report that LARGE2 encodes a HECT-domain E3 ubiquitin ligase OsUPL2 and regulates panicle size and grain number in rice
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	The loss of function large2 mutants produce large panicles with increased grain number, wide grains and leaves, and thick culms
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	LARGE2 regulates panicle size and grain number by repressing meristematic activity
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Biochemical analyses show that LARGE2 physically associates with ABERRANT PANICLE ORGANIZATION1 (APO1) and APO2, two positive regulators of panicle size and grain number, and modulates their stabilities
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain number	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Here we report that LARGE2 encodes a HECT-domain E3 ubiquitin ligase OsUPL2 and regulates panicle size and grain number in rice
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain number	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	The loss of function large2 mutants produce large panicles with increased grain number, wide grains and leaves, and thick culms
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain number	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	LARGE2 regulates panicle size and grain number by repressing meristematic activity
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain number	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Biochemical analyses show that LARGE2 physically associates with ABERRANT PANICLE ORGANIZATION1 (APO1) and APO2, two positive regulators of panicle size and grain number, and modulates their stabilities
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	grain number	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	panicle size	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Here we report that LARGE2 encodes a HECT-domain E3 ubiquitin ligase OsUPL2 and regulates panicle size and grain number in rice
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	panicle size	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	LARGE2 regulates panicle size and grain number by repressing meristematic activity
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	panicle size	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Biochemical analyses show that LARGE2 physically associates with ABERRANT PANICLE ORGANIZATION1 (APO1) and APO2, two positive regulators of panicle size and grain number, and modulates their stabilities
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	panicle size	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
LARGE2|OsUPL2	Os12g0428600	LOC_Os12g24080	Ubiquitin	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	Here we report that LARGE2 encodes a HECT-domain E3 ubiquitin ligase OsUPL2 and regulates panicle size and grain number in rice
LAS|TSV2	Os02g0538000	LOC_Os02g33500	chloroplast	Lethal albinic seedling, encoding a threonyl-tRNA synthetase, is involved in development of plastid protein synthesis system in rice.	Together, our findings indicated that LAS is essential not only for chloroplast development by stabilizing the NEP and PEP gene expression, but also for protein synthesis and construction of the ribosome system in rice chloroplasts
LAS|TSV2	Os02g0538000	LOC_Os02g33500	development	Lethal albinic seedling, encoding a threonyl-tRNA synthetase, is involved in development of plastid protein synthesis system in rice.	Physiological and ultrastructural analysis of las mutant plants revealed weak chlorophyll fluorescence, negligible chlorophyll accumulation, and defective thylakoid membrane development
LAS|TSV2	Os02g0538000	LOC_Os02g33500	development	Lethal albinic seedling, encoding a threonyl-tRNA synthetase, is involved in development of plastid protein synthesis system in rice.	Together, our findings indicated that LAS is essential not only for chloroplast development by stabilizing the NEP and PEP gene expression, but also for protein synthesis and construction of the ribosome system in rice chloroplasts
LAS|TSV2	Os02g0538000	LOC_Os02g33500	R protein	Lethal albinic seedling, encoding a threonyl-tRNA synthetase, is involved in development of plastid protein synthesis system in rice.	Together, our findings indicated that LAS is essential not only for chloroplast development by stabilizing the NEP and PEP gene expression, but also for protein synthesis and construction of the ribosome system in rice chloroplasts
LAS|TSV2	Os02g0538000	LOC_Os02g33500	chloroplast development	Lethal albinic seedling, encoding a threonyl-tRNA synthetase, is involved in development of plastid protein synthesis system in rice.	Together, our findings indicated that LAS is essential not only for chloroplast development by stabilizing the NEP and PEP gene expression, but also for protein synthesis and construction of the ribosome system in rice chloroplasts
LAS|TSV2	Os02g0538000	LOC_Os02g33500	chloroplast	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.
LAS|TSV2	Os02g0538000	LOC_Os02g33500	growth	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.
LAS|TSV2	Os02g0538000	LOC_Os02g33500	development	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.
LAS|TSV2	Os02g0538000	LOC_Os02g33500	seedling	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.
LAS|TSV2	Os02g0538000	LOC_Os02g33500	cold stress	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.
LAS|TSV2	Os02g0538000	LOC_Os02g33500	chloroplast development	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.
LAS|TSV2	Os02g0538000	LOC_Os02g33500	cold	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.
LAS|TSV2	Os02g0538000	LOC_Os02g33500	seedling growth	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.	Rice TSV2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.
LAX1	Os01g0831000	LOC_Os01g61480	floral meristem	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	In addition to its role in forming lateral meristems, the wild-type LAX1 gene acts as a floral meristem identity gene which specifies the terminal spikelet meristem
LAX1	Os01g0831000	LOC_Os01g61480	meristem	Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice	LAX1 mRNA accumulates in two to three layers of cells in the boundary region between the initiating AM and the shoot apical meristem
LAX1	Os01g0831000	LOC_Os01g61480	meristem	Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice	In lax1 mutants, the proliferation of meristematic cells is initiated but fails to progress into the formation of AM
LAX1	Os01g0831000	LOC_Os01g61480	shoot	Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice	LAX1 mRNA accumulates in two to three layers of cells in the boundary region between the initiating AM and the shoot apical meristem
LAX1	Os01g0831000	LOC_Os01g61480	meristem	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	In situ hybridization analysis using OSH1, a rice knotted1 (kn1) ortholog, confirmed the absence of lateral meristems in lax1-2 panicles
LAX1	Os01g0831000	LOC_Os01g61480	meristem	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	These defects indicate that the LAX1 gene is required for the initiation/maintenance of axillary meristems in the rice panicle
LAX1	Os01g0831000	LOC_Os01g61480	meristem	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	In addition to its role in forming lateral meristems, the wild-type LAX1 gene acts as a floral meristem identity gene which specifies the terminal spikelet meristem
LAX1	Os01g0831000	LOC_Os01g61480	meristem	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	A comparison of the defects in lax1-1 and lax1-2 plants suggested that the sensitivities to reduced LAX1 activity were not uniform among different types of meristems
LAX1	Os01g0831000	LOC_Os01g61480	inflorescence architecture	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development
LAX1	Os01g0831000	LOC_Os01g61480	spikelet	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	In lax1-2, which is a new and stronger allele of the previously reported lax mutant, initiation and/or maintenance of rachis-branches, lateral spikelets, and terminal spikelets was severely prevented
LAX1	Os01g0831000	LOC_Os01g61480	spikelet	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	In addition to its role in forming lateral meristems, the wild-type LAX1 gene acts as a floral meristem identity gene which specifies the terminal spikelet meristem
LAX1	Os01g0831000	LOC_Os01g61480	spikelet	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development
LAX1	Os01g0831000	LOC_Os01g61480	panicle	Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice	In rice (Oryza sativa), LAX PANICLE1 (LAX1) function is required for the generation of AM throughout the plant's lifespan
LAX1	Os01g0831000	LOC_Os01g61480	shoot apical meristem	Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice	LAX1 mRNA accumulates in two to three layers of cells in the boundary region between the initiating AM and the shoot apical meristem
LAX1	Os01g0831000	LOC_Os01g61480	branching	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	The lax2 mutant is similar to lax panicle1 (lax1) in that it lacks an AM in most of the lateral branching of the panicle and has a reduced number of AMs at the vegetative stage
LAX1	Os01g0831000	LOC_Os01g61480	branching	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	The lax1 lax2 double mutant synergistically enhances the reduced-branching phenotype, indicating the presence of multiple pathways for branching
LAX1	Os01g0831000	LOC_Os01g61480	axillary meristem	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	These defects indicate that the LAX1 gene is required for the initiation/maintenance of axillary meristems in the rice panicle
LAX1	Os01g0831000	LOC_Os01g61480	floral	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	In addition to its role in forming lateral meristems, the wild-type LAX1 gene acts as a floral meristem identity gene which specifies the terminal spikelet meristem
LAX1	Os01g0831000	LOC_Os01g61480	panicle	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	In situ hybridization analysis using OSH1, a rice knotted1 (kn1) ortholog, confirmed the absence of lateral meristems in lax1-2 panicles
LAX1	Os01g0831000	LOC_Os01g61480	panicle	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	These defects indicate that the LAX1 gene is required for the initiation/maintenance of axillary meristems in the rice panicle
LAX1	Os01g0831000	LOC_Os01g61480	panicle	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development
LAX1	Os01g0831000	LOC_Os01g61480	spikelet meristem	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	In addition to its role in forming lateral meristems, the wild-type LAX1 gene acts as a floral meristem identity gene which specifies the terminal spikelet meristem
LAX1	Os01g0831000	LOC_Os01g61480	architecture	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development
LAX1	Os01g0831000	LOC_Os01g61480	vegetative	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	The lax2 mutant is similar to lax panicle1 (lax1) in that it lacks an AM in most of the lateral branching of the panicle and has a reduced number of AMs at the vegetative stage
LAX1	Os01g0831000	LOC_Os01g61480	panicle	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems	The lax2 mutant is similar to lax panicle1 (lax1) in that it lacks an AM in most of the lateral branching of the panicle and has a reduced number of AMs at the vegetative stage
LAX1	Os01g0831000	LOC_Os01g61480	inflorescence	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development
LAZY2	Os02g0180200	LOC_Os02g08380	tiller	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.
LAZY2	Os02g0180200	LOC_Os02g08380	tiller	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.	 We characterized a novel rice tiller angle mutant lazy2 (la2) and isolated the causative gene LA2 through map-based cloning
LAZY2	Os02g0180200	LOC_Os02g08380	starch	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.
LAZY2	Os02g0180200	LOC_Os02g08380	map-based cloning	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.	 We characterized a novel rice tiller angle mutant lazy2 (la2) and isolated the causative gene LA2 through map-based cloning
LAZY2	Os02g0180200	LOC_Os02g08380	starch biosynthesis	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.
LAZY2	Os02g0180200	LOC_Os02g08380	tiller angle	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.
LAZY2	Os02g0180200	LOC_Os02g08380	tiller angle	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.	 We characterized a novel rice tiller angle mutant lazy2 (la2) and isolated the causative gene LA2 through map-based cloning
LAZY3	Os03g0133300	LOC_Os03g04100	shoot	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.
LAZY3	Os03g0133300	LOC_Os03g04100	tiller	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.
LAZY3	Os03g0133300	LOC_Os03g04100	tiller	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.	 We characterized a novel tiller angle gene LAZY3 (LA3) in rice through map-based cloning
LAZY3	Os03g0133300	LOC_Os03g04100	map-based cloning	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.	 We characterized a novel tiller angle gene LAZY3 (LA3) in rice through map-based cloning
LAZY3	Os03g0133300	LOC_Os03g04100	tiller angle	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.
LAZY3	Os03g0133300	LOC_Os03g04100	tiller angle	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.	 We characterized a novel tiller angle gene LAZY3 (LA3) in rice through map-based cloning
LBD12-1	Os12g0106200	LOC_Os12g01550	growth	The LBD12-1 transcription factor suppresses apical meristem size by repressing Argonaute 10 expression.	Overexpression of AGO10 in an LBD12-1 overexpression background rescued the growth defect phenotype of LBD12-1 overexpressing plants
LBD12-1	Os12g0106200	LOC_Os12g01550	salt	The LBD12-1 transcription factor suppresses apical meristem size by repressing Argonaute 10 expression.	lbd12-1 loss-of-function mutants showed similar phenotypes and SAM size to WT under normal conditions, but lbd12-1 had a larger SAM under salt stress
LBD12-1	Os12g0106200	LOC_Os12g01550	transcription factor	The LBD12-1 transcription factor suppresses apical meristem size by repressing Argonaute 10 expression.	The LBD12-1 transcription factor suppresses apical meristem size by repressing Argonaute 10 expression.
LBD12-1	Os12g0106200	LOC_Os12g01550	salt stress	The LBD12-1 transcription factor suppresses apical meristem size by repressing Argonaute 10 expression.	lbd12-1 loss-of-function mutants showed similar phenotypes and SAM size to WT under normal conditions, but lbd12-1 had a larger SAM under salt stress
LBD12-1	Os12g0106200	LOC_Os12g01550	meristem	The LBD12-1 transcription factor suppresses apical meristem size by repressing Argonaute 10 expression.	The LBD12-1 transcription factor suppresses apical meristem size by repressing Argonaute 10 expression.
LBD12-1	Os12g0106200	LOC_Os12g01550	stress	The LBD12-1 transcription factor suppresses apical meristem size by repressing Argonaute 10 expression.	The expression of LBD12-1 and its binding ability to the AGO10 promoter is induced by stress
LBD12-1	Os12g0106200	LOC_Os12g01550	stress	The LBD12-1 transcription factor suppresses apical meristem size by repressing Argonaute 10 expression.	lbd12-1 loss-of-function mutants showed similar phenotypes and SAM size to WT under normal conditions, but lbd12-1 had a larger SAM under salt stress
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	leaf development	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	LC2 is mainly expressed in the lamina joint during leaf development, and particularly, is induced by the phytohormones abscisic acid, gibberellic acid, auxin, and brassinosteroids
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	brassinosteroid	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	LC2 is mainly expressed in the lamina joint during leaf development, and particularly, is induced by the phytohormones abscisic acid, gibberellic acid, auxin, and brassinosteroids
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	vernalization	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	The LC2 gene was isolated through positional cloning, and encodes a vernalization insensitive 3-like protein
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	phytohormone	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	LC2 is mainly expressed in the lamina joint during leaf development, and particularly, is induced by the phytohormones abscisic acid, gibberellic acid, auxin, and brassinosteroids
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	flower	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	Here we demonstrated that rice LC2 (OsVIL3) and OsVIL2 (two OsVILs, possible components of PRC2 complex) promote rice flowering
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	floral	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	Interestingly, LC2 binds to the promoter region of a floral repressor OsLF and represses the OsLF expression via H3K27 tri-methylation modification
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	auxin	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	LC2 is mainly expressed in the lamina joint during leaf development, and particularly, is induced by the phytohormones abscisic acid, gibberellic acid, auxin, and brassinosteroids
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	flower	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	Here we demonstrated that rice LC2 (OsVIL3) and OsVIL2 (two OsVILs, possible components of PRC2 complex) promote rice flowering
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	flower	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	These results first demonstrated that the putative PRC2 in rice is involved in photoperiod flowering regulation, which is different from that of Arabidopsis, and revealed that LC2 binds the promoter region of target gene, presenting a possible mechanism of the recruitment process of PRC2 complex to its target genes
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	flower	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	leaf	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	To understand the molecular mechanism controlling rice leaf angles, one rice leaf inclination2 (lc2, three alleles) mutant was identified and functionally characterized
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	leaf	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	Compared to wild-type plants, lc2 mutants have enlarged leaf angles due to increased cell division in the adaxial epidermis of lamina joint
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	leaf	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	Complementary expression of LC2 reversed the enlarged leaf angles of lc2 plants, confirming its role in controlling leaf inclination
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	leaf	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	LC2 is mainly expressed in the lamina joint during leaf development, and particularly, is induced by the phytohormones abscisic acid, gibberellic acid, auxin, and brassinosteroids
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	leaf	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	LC2 is localized in the nucleus and defects of LC2 result in altered expression of cell division and hormone-responsive genes, indicating an important role of LC2 in regulating leaf inclination and mediating hormone effects
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	cell division	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	Compared to wild-type plants, lc2 mutants have enlarged leaf angles due to increased cell division in the adaxial epidermis of lamina joint
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	cell division	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	LC2 is localized in the nucleus and defects of LC2 result in altered expression of cell division and hormone-responsive genes, indicating an important role of LC2 in regulating leaf inclination and mediating hormone effects
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	heading date	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	Our results showed that expressions of LC2 and OsVIL2 are induced by SD (short-day) conditions and both lc2 mutant and OsVIL2-RNAi lines display delayed heading date, consistent with the reduced expression levels of Hd1 and Hd3a
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	lamina	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	Compared to wild-type plants, lc2 mutants have enlarged leaf angles due to increased cell division in the adaxial epidermis of lamina joint
LC2|OsVIL3	Os02g0152500	LOC_Os02g05840	lamina	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar	LC2 is mainly expressed in the lamina joint during leaf development, and particularly, is induced by the phytohormones abscisic acid, gibberellic acid, auxin, and brassinosteroids
LC3	Os06g0595900	LOC_Os06g39480	leaf	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	LC3 deficiency results in increased leaf inclination and enhanced expressions of OsIAA12 and OsGH3
LC3	Os06g0595900	LOC_Os06g39480	auxin	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	2, and interacts with LC3 to synergistically suppress auxin signaling
LC4	Os01g0923900	LOC_Os01g69940	leaf	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells
LC4	Os01g0923900	LOC_Os01g69940	leaf	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Suppressed expression of miR394, or enhanced expression of LC4, results in enlarged leaf angles, whereas reducing LC4 expression by CRISPR/Cas9 leads to reduced leaf inclination, suggesting LC4 as candidate for use in rice architecture improvement
LC4	Os01g0923900	LOC_Os01g69940	leaf	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture
LC4	Os01g0923900	LOC_Os01g69940	auxin	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	LC4 interacts with SKP1, a component of the SCF E3 ubiquitin ligase complex, and transcription of both miR394 and LC4 are regulated by auxin
LC4	Os01g0923900	LOC_Os01g69940	auxin	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture
LC4	Os01g0923900	LOC_Os01g69940	development	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells
LC4	Os01g0923900	LOC_Os01g69940	architecture	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Suppressed expression of miR394, or enhanced expression of LC4, results in enlarged leaf angles, whereas reducing LC4 expression by CRISPR/Cas9 leads to reduced leaf inclination, suggesting LC4 as candidate for use in rice architecture improvement
LC4	Os01g0923900	LOC_Os01g69940	architecture	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture
LC4	Os01g0923900	LOC_Os01g69940	auxin response	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture
LC4	Os01g0923900	LOC_Os01g69940	lamina	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells
LC4	Os01g0923900	LOC_Os01g69940	Ubiquitin	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	LC4 interacts with SKP1, a component of the SCF E3 ubiquitin ligase complex, and transcription of both miR394 and LC4 are regulated by auxin
LC4	Os01g0923900	LOC_Os01g69940	lamina joint	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells
LC4	Os01g0923900	LOC_Os01g69940	leaf angle	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Suppressed expression of miR394, or enhanced expression of LC4, results in enlarged leaf angles, whereas reducing LC4 expression by CRISPR/Cas9 leads to reduced leaf inclination, suggesting LC4 as candidate for use in rice architecture improvement
LDMAR	Os12g0545900	LOC_Os12g36030	development	A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice.	We found that sufficient amount of the LDMAR transcript is required for normal pollen development of plants grown under long-day conditions
LDMAR	Os12g0545900	LOC_Os12g36030	pollen	A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice.	We found that sufficient amount of the LDMAR transcript is required for normal pollen development of plants grown under long-day conditions
LDMAR	Os12g0545900	LOC_Os12g36030	cell death	A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice.	This change brought about increased methylation in the putative promoter region of LDMAR, which reduced the transcription of LDMAR specifically under long-day conditions, resulting in premature programmed cell death (PCD) in developing anthers, thus causing PSMS
LDMAR	Os12g0545900	LOC_Os12g36030	pollen development	A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice.	We found that sufficient amount of the LDMAR transcript is required for normal pollen development of plants grown under long-day conditions
LDMAR	Os12g0545900	LOC_Os12g36030	programmed cell death	A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice.	This change brought about increased methylation in the putative promoter region of LDMAR, which reduced the transcription of LDMAR specifically under long-day conditions, resulting in premature programmed cell death (PCD) in developing anthers, thus causing PSMS
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	pollen	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis.	Although meiosis initiates normally, as indicated by staining of the centromere-specific histone CENH3, the meiotic chromosomes in lepto1 mutant pollen mother cells (PMCs) fail to form the thin thread-like structures that are typical of leptotene chromosomes in wild-type PMCs
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	cell death	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis.	LEPTO1 is also essential for programmed cell death in tapetal cells
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	meiosis	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis.	Although meiosis initiates normally, as indicated by staining of the centromere-specific histone CENH3, the meiotic chromosomes in lepto1 mutant pollen mother cells (PMCs) fail to form the thin thread-like structures that are typical of leptotene chromosomes in wild-type PMCs
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	tapetal	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis.	LEPTO1 is also essential for programmed cell death in tapetal cells
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	meiotic	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis.	Although meiosis initiates normally, as indicated by staining of the centromere-specific histone CENH3, the meiotic chromosomes in lepto1 mutant pollen mother cells (PMCs) fail to form the thin thread-like structures that are typical of leptotene chromosomes in wild-type PMCs
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	meiotic	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis.	Furthermore, lepto1 mutants fail to form chromosomal double-strand breaks, do not recruit meiosis-specific proteins to the meiotic chromosomes, and show disrupted callose deposition
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	pollen	Defective Leptotene Chromosome 1 (DLC1) encodes a type-B response regulator and is required for rice meiosis.	DLC1 is strongly expressed in the pollen mother cells (PMCs) and tapetum and encodes a nucleus-located rice type-B response regulator (RR) with transcriptional activity
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	meiosis	Defective Leptotene Chromosome 1 (DLC1) encodes a type-B response regulator and is required for rice meiosis.	Further investigations show that DLC1 interacts with all five putative rice histidine phosphotransfer proteins (HPs) in yeast and planta cells, suggesting a possible participation of the two-component signalling systems (TCS) in rice meiosis
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	meiosis	Defective Leptotene Chromosome 1 (DLC1) encodes a type-B response regulator and is required for rice meiosis.	Our results demonstrate that DLC1 is required for rice meiosis and fertility, providing useful information for the role of TCS in rice meiosis
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	sterile	Defective Leptotene Chromosome 1 (DLC1) encodes a type-B response regulator and is required for rice meiosis.	The dlc1 mutant is sterile in both male and female gametophytes due to an earlier defect in the leptotene chromosome and subsequent abnormalities at later stages
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	R protein	Defective Leptotene Chromosome 1 (DLC1) encodes a type-B response regulator and is required for rice meiosis.	Further investigations show that DLC1 interacts with all five putative rice histidine phosphotransfer proteins (HPs) in yeast and planta cells, suggesting a possible participation of the two-component signalling systems (TCS) in rice meiosis
LEPTO1|OsRR24|DLC1	Os02g0182100	LOC_Os02g08500	tapetum	Defective Leptotene Chromosome 1 (DLC1) encodes a type-B response regulator and is required for rice meiosis.	DLC1 is strongly expressed in the pollen mother cells (PMCs) and tapetum and encodes a nucleus-located rice type-B response regulator (RR) with transcriptional activity
LFS	Os08g0442400	LOC_Os08g34360	growth	The AP2/ERF transcription factor LATE FLOWERING SEMI-DWARF suppresses long-day-dependent repression of flowering.	 This suggests that increased LFS activity during vegetative growth gradually attenuates OsLFL1 activity
LFS	Os08g0442400	LOC_Os08g34360	vegetative	The AP2/ERF transcription factor LATE FLOWERING SEMI-DWARF suppresses long-day-dependent repression of flowering.	 This suggests that increased LFS activity during vegetative growth gradually attenuates OsLFL1 activity
LFS	Os08g0442400	LOC_Os08g34360	floral	The AP2/ERF transcription factor LATE FLOWERING SEMI-DWARF suppresses long-day-dependent repression of flowering.	 Expression of the LD-specific floral repressor gene LEAFY COTYLEDON2 AND FUSCA3-LIKE 1 (OsLFL1) was upregulated in lfs knockout mutants, and LFS bound directly to the GCC-rich motif in the OsLFL1 promoter, repressing OsLFL1 expression
LFS	Os08g0442400	LOC_Os08g34360	flowering	The AP2/ERF transcription factor LATE FLOWERING SEMI-DWARF suppresses long-day-dependent repression of flowering.	 Mutation of LFS delayed flowering under LD but not SD conditions
LFS	Os08g0442400	LOC_Os08g34360	flowering	The AP2/ERF transcription factor LATE FLOWERING SEMI-DWARF suppresses long-day-dependent repression of flowering.	 Our results demonstrate the novel roles of LFS in inducing flowering under natural LD conditions
LFS	Os08g0442400	LOC_Os08g34360	vernalization	The AP2/ERF transcription factor LATE FLOWERING SEMI-DWARF suppresses long-day-dependent repression of flowering.	 LFS did not affect the expression of other OsLFL1 regulators, including OsMADS50, OsMADS56, VERNALIZATION INSENSITIVE3-LIKE 2, and GERMINATION DEFECTIVE 1, or interact with them
LGD1	Os09g0502100	LOC_Os09g32540	grain yield	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGD1	Os09g0502100	LOC_Os09g32540	vegetative	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	Our results demonstrated that LGD1 pleiotropically regulated rice vegetative growth and development through both the distinct spatiotemporal expression patterns of its multiple transcripts and RNA binding activity
LGD1	Os09g0502100	LOC_Os09g32540	growth	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	In this study, T-DNA mutant and RNAi transgenic approaches were used to functionally characterize a unique rice gene, LAGGING GROWTH AND DEVELOPMENT 1 (LGD1)
LGD1	Os09g0502100	LOC_Os09g32540	growth	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGD1	Os09g0502100	LOC_Os09g32540	growth	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	Our results demonstrated that LGD1 pleiotropically regulated rice vegetative growth and development through both the distinct spatiotemporal expression patterns of its multiple transcripts and RNA binding activity
LGD1	Os09g0502100	LOC_Os09g32540	growth	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters
LGD1	Os09g0502100	LOC_Os09g32540	grain	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGD1	Os09g0502100	LOC_Os09g32540	architecture	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGD1	Os09g0502100	LOC_Os09g32540	panicle architecture	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGD1	Os09g0502100	LOC_Os09g32540	height	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGD1	Os09g0502100	LOC_Os09g32540	tiller number	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGD1	Os09g0502100	LOC_Os09g32540	tiller number	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The fewer unelongated internodes and cells in lgd1 led to respective reductions in tiller number and to semi-dwarfism
LGD1	Os09g0502100	LOC_Os09g32540	yield	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGD1	Os09g0502100	LOC_Os09g32540	dwarf	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The fewer unelongated internodes and cells in lgd1 led to respective reductions in tiller number and to semi-dwarfism
LGD1	Os09g0502100	LOC_Os09g32540	tiller	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGD1	Os09g0502100	LOC_Os09g32540	tiller	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The fewer unelongated internodes and cells in lgd1 led to respective reductions in tiller number and to semi-dwarfism
LGD1	Os09g0502100	LOC_Os09g32540	panicle	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters	The lgd1 mutant showed slow growth, reduced tiller number and plant height, altered panicle architecture and reduced grain yield
LGG	Os11g0637700	LOC_Os11g41890	panicle	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	These results show that LGG functions at the very early stage of panicle development
LGG	Os11g0637700	LOC_Os11g41890	spikelet	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	CRISPR/Cas9-mediated knockout and overexpression of LGG led to longer and shorter grains than wild type, respectively, showing that LGG regulates spikelet hull length
LGG	Os11g0637700	LOC_Os11g41890	spikelet	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	Longitudinal cell numbers of spikelet hulls of Lgg, knockout and overexpressed plants were significantly different from those of the wild type, suggesting that LGG might regulate longitudinal cell proliferation in the spikelet hull
LGG	Os11g0637700	LOC_Os11g41890	spikelet	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	Taken together, these results suggest that LGG might be a regulator of cell cycle and cell division in the rice spikelet hull
LGG	Os11g0637700	LOC_Os11g41890	grain	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	The Large grain (Lgg) mutant, found in the nDart1-tagged lines of Koshihikari, is caused by a truncated nDart1-3 and 355<U+2009>bp deletion in the 5' UTR of LGG, which encodes a putative RNA-binding protein, through transposon display and cosegregation analysis between grain length and LGG genotype in F2 and F3
LGG	Os11g0637700	LOC_Os11g41890	development	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	These results show that LGG functions at the very early stage of panicle development
LGG	Os11g0637700	LOC_Os11g41890	grain length	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	The Large grain (Lgg) mutant, found in the nDart1-tagged lines of Koshihikari, is caused by a truncated nDart1-3 and 355<U+2009>bp deletion in the 5' UTR of LGG, which encodes a putative RNA-binding protein, through transposon display and cosegregation analysis between grain length and LGG genotype in F2 and F3
LGG	Os11g0637700	LOC_Os11g41890	cell division	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	Taken together, these results suggest that LGG might be a regulator of cell cycle and cell division in the rice spikelet hull
LGG	Os11g0637700	LOC_Os11g41890	cell cycle	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	RNA-Seq analysis of 1-mm-long young panicles from LGG knockout and overexpressing plants revealed that the expressions of many cell cycle-related genes were reduced in knockout plants relative to LGG-overexpressing plants and wild type, whereas some genes for cell proliferation were highly expressed in knockout plants
LGG	Os11g0637700	LOC_Os11g41890	cell cycle	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	Taken together, these results suggest that LGG might be a regulator of cell cycle and cell division in the rice spikelet hull
LGG	Os11g0637700	LOC_Os11g41890	cell proliferation	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	Longitudinal cell numbers of spikelet hulls of Lgg, knockout and overexpressed plants were significantly different from those of the wild type, suggesting that LGG might regulate longitudinal cell proliferation in the spikelet hull
LGG	Os11g0637700	LOC_Os11g41890	cell proliferation	LARGE GRAIN encodes a putative RNA-binding protein that regulates spikelet hull length in rice.	RNA-Seq analysis of 1-mm-long young panicles from LGG knockout and overexpressing plants revealed that the expressions of many cell cycle-related genes were reduced in knockout plants relative to LGG-overexpressing plants and wild type, whereas some genes for cell proliferation were highly expressed in knockout plants
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	height	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Suppression of endogenous OsLIC expression resulted in drastically increased leaf and tiller angles, shortened shoot height, and consequently reduced grain production in rice
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	grain	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Suppression of endogenous OsLIC expression resulted in drastically increased leaf and tiller angles, shortened shoot height, and consequently reduced grain production in rice
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	tiller	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Here, we demonstrate that Oryza sativa LEAF and TILLER ANGLE INCREASED CONTROLLER (LIC) acts as an antagonistic transcription factor of BRASSINAZOLE-RESISTANT 1 (BZR1) to attenuate the BR signaling pathway
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	tiller angle	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Here, we demonstrate that Oryza sativa LEAF and TILLER ANGLE INCREASED CONTROLLER (LIC) acts as an antagonistic transcription factor of BRASSINAZOLE-RESISTANT 1 (BZR1) to attenuate the BR signaling pathway
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	brassinosteroid	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	 BR 	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Here, we demonstrate that Oryza sativa LEAF and TILLER ANGLE INCREASED CONTROLLER (LIC) acts as an antagonistic transcription factor of BRASSINAZOLE-RESISTANT 1 (BZR1) to attenuate the BR signaling pathway
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	 BR 	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Quantitative PCR revealed LIC transcription rapidly induced by BR treatment
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	 BR 	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Image analysis and immunoblotting showed that upon BR treatment LIC proteins translocate from the cytoplasm to the nucleus in a phosphorylation-dependent fashion
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	 BR 	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Molecular and physiology assays revealed that LIC plays a dominant role at high BR levels, whereas BZR1 is dominant at low levels
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	architecture	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Here we describe a novel CCCH-type zinc finger gene, OsLIC (Oraza sativaleaf and tiller angle increased controller), which is involved in the regulation of rice plant architecture
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	architecture	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	OsLIC may be a transcription activator to control rice plant architecture
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	architecture	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	tiller	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Here we describe a novel CCCH-type zinc finger gene, OsLIC (Oraza sativaleaf and tiller angle increased controller), which is involved in the regulation of rice plant architecture
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	tiller	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Suppression of endogenous OsLIC expression resulted in drastically increased leaf and tiller angles, shortened shoot height, and consequently reduced grain production in rice
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	tiller	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	OsLIC is predominantly expressed in rice collar and tiller bud
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	shoot	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Suppression of endogenous OsLIC expression resulted in drastically increased leaf and tiller angles, shortened shoot height, and consequently reduced grain production in rice
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	leaf	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Here, we demonstrate that Oryza sativa LEAF and TILLER ANGLE INCREASED CONTROLLER (LIC) acts as an antagonistic transcription factor of BRASSINAZOLE-RESISTANT 1 (BZR1) to attenuate the BR signaling pathway
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	leaf	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	The gain-of-function mutant lic-1 and LIC-overexpressing lines showed erect leaves, similar to BZR1-depleted lines, which indicates the opposite roles of LIC and BZR1 in regulating leaf bending
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	leaf	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	LIC directly regulated target genes such as INCREASED LEAF INCLINATION 1 (ILI1) to oppose the action of BZR1
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	leaf	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Thus, LIC regulates rice leaf bending as an antagonistic transcription factor of BZR1
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	leaf	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Here we describe a novel CCCH-type zinc finger gene, OsLIC (Oraza sativaleaf and tiller angle increased controller), which is involved in the regulation of rice plant architecture
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	leaf	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Suppression of endogenous OsLIC expression resulted in drastically increased leaf and tiller angles, shortened shoot height, and consequently reduced grain production in rice
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	brassinosteroid	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	resistant	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Here, we demonstrate that Oryza sativa LEAF and TILLER ANGLE INCREASED CONTROLLER (LIC) acts as an antagonistic transcription factor of BRASSINAZOLE-RESISTANT 1 (BZR1) to attenuate the BR signaling pathway
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	BR signaling	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Here, we demonstrate that Oryza sativa LEAF and TILLER ANGLE INCREASED CONTROLLER (LIC) acts as an antagonistic transcription factor of BRASSINAZOLE-RESISTANT 1 (BZR1) to attenuate the BR signaling pathway
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	erect	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	The gain-of-function mutant lic-1 and LIC-overexpressing lines showed erect leaves, similar to BZR1-depleted lines, which indicates the opposite roles of LIC and BZR1 in regulating leaf bending
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	erect	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	The phenotypes of lic-1 and LIC-overexpressing lines in erect leaves contribute to ideal plant architecture
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	transcription factor	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Here, we demonstrate that Oryza sativa LEAF and TILLER ANGLE INCREASED CONTROLLER (LIC) acts as an antagonistic transcription factor of BRASSINAZOLE-RESISTANT 1 (BZR1) to attenuate the BR signaling pathway
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	transcription factor	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	Thus, LIC regulates rice leaf bending as an antagonistic transcription factor of BZR1
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	architecture	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice	The phenotypes of lic-1 and LIC-overexpressing lines in erect leaves contribute to ideal plant architecture
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	tiller angle	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Here we describe a novel CCCH-type zinc finger gene, OsLIC (Oraza sativaleaf and tiller angle increased controller), which is involved in the regulation of rice plant architecture
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	tiller angle	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling	Suppression of endogenous OsLIC expression resulted in drastically increased leaf and tiller angles, shortened shoot height, and consequently reduced grain production in rice
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	leaf	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	leaf	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	 Therefore, our results suggest that OsRELA can act as a transcriptional regulator and is involved in the regulation of leaf inclination by regulating the transcriptional activity of OsLIC
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	transcriptional regulator	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice	 Therefore, our results suggest that OsRELA can act as a transcriptional regulator and is involved in the regulation of leaf inclination by regulating the transcriptional activity of OsLIC
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	leaf	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	transcription factor	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	Rice OsLIC encoding a CCCH zinc finger transcription factor plays an important role in immunity
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	resistance	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	resistance	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Genetic assays confirmed that the osilc knockout mutants and OsWRKY30-overexpressing plants exhibited enhanced resistance to Xoo and Xoc, knocking out OsWRKY30 in the oslic mutants attenuated the resistance against bacterial pathogens
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	resistance	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 OsMAPK6 physically interacted with and phosphorylated OsLIC leading to decreased OsLIC DNA-binding activity, therefore, overexpression of OsLIC partially suppressed OsMAPK6-mediated rice resistance
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	resistance	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Collectively, these results reveal that OsMAPK6-mediated phosphorylation of OsLIC positively regulates rice resistance to Xoo and Xoc by modulating OsWRKY30 transcription, suggesting that OsMAPK6-OsLIC-OsWRKY30 module is an immune signaling pathway in response to the bacterial pathogens
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	blight	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	bacterial blight	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	immunity	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	Rice OsLIC encoding a CCCH zinc finger transcription factor plays an important role in immunity
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	R protein	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	zinc	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	zinc	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	Rice OsLIC encoding a CCCH zinc finger transcription factor plays an important role in immunity
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	xoo	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Genetic assays confirmed that the osilc knockout mutants and OsWRKY30-overexpressing plants exhibited enhanced resistance to Xoo and Xoc, knocking out OsWRKY30 in the oslic mutants attenuated the resistance against bacterial pathogens
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	xoo	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Collectively, these results reveal that OsMAPK6-mediated phosphorylation of OsLIC positively regulates rice resistance to Xoo and Xoc by modulating OsWRKY30 transcription, suggesting that OsMAPK6-OsLIC-OsWRKY30 module is an immune signaling pathway in response to the bacterial pathogens
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	Xoo	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Genetic assays confirmed that the osilc knockout mutants and OsWRKY30-overexpressing plants exhibited enhanced resistance to Xoo and Xoc, knocking out OsWRKY30 in the oslic mutants attenuated the resistance against bacterial pathogens
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	Xoo	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Collectively, these results reveal that OsMAPK6-mediated phosphorylation of OsLIC positively regulates rice resistance to Xoo and Xoc by modulating OsWRKY30 transcription, suggesting that OsMAPK6-OsLIC-OsWRKY30 module is an immune signaling pathway in response to the bacterial pathogens
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	 xoo 	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Genetic assays confirmed that the osilc knockout mutants and OsWRKY30-overexpressing plants exhibited enhanced resistance to Xoo and Xoc, knocking out OsWRKY30 in the oslic mutants attenuated the resistance against bacterial pathogens
LIC|OsLIC1|OsLIC|OsFLA6	Os06g0704300	LOC_Os06g49080	 xoo 	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Collectively, these results reveal that OsMAPK6-mediated phosphorylation of OsLIC positively regulates rice resistance to Xoo and Xoc by modulating OsWRKY30 transcription, suggesting that OsMAPK6-OsLIC-OsWRKY30 module is an immune signaling pathway in response to the bacterial pathogens
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	leaf	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Under natural field conditions, the leaves of LIL1 mutant plants exhibited light-induced, small, rust-red lesions that first appeared at the leaf tips and subsequently expanded throughout the entire leaf blade to the leaf sheath
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	resistance	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	The LIL1 mutants also displayed increased expression of defense-related genes and enhanced resistance to rice blast fungus (Magnaporthe grisea)
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	resistance	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Thus, LIL1 is a novel LMM in rice that will facilitate the further study of the molecular mechanisms of HR and the rice blast resistance
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	sheath	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Under natural field conditions, the leaves of LIL1 mutant plants exhibited light-induced, small, rust-red lesions that first appeared at the leaf tips and subsequently expanded throughout the entire leaf blade to the leaf sheath
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	blast	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	The LIL1 mutants also displayed increased expression of defense-related genes and enhanced resistance to rice blast fungus (Magnaporthe grisea)
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	blast	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Thus, LIL1 is a novel LMM in rice that will facilitate the further study of the molecular mechanisms of HR and the rice blast resistance
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	cell death	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Histochemical staining indicated that LIL1 lesions displayed an abnormal accumulation of reactive oxygen species (ROS) and resulted from programmed cell death (PCD)
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	Kinase	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Sequence analysis of these 12 candidate genes revealed a G to A base substitution in the fourth exon of LOC_Os07g30510, a putative cysteine-rich receptor-like kinase (CRK), which led to an amino acid change (Val 429 to Ile) in the LIL1 protein
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	blast resistance	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Thus, LIL1 is a novel LMM in rice that will facilitate the further study of the molecular mechanisms of HR and the rice blast resistance
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	lesion	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Lesion mimic mutants (LMMs), such as LIL1 that was identified in an ethylmethane sulfonate mutagenized population of Indica rice (Oryza sativa L
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	lesion	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Overexpression of the LOC_Os07g30510 gene from LIL1 induced a LIL1-like lesion phenotype in Nipponbare
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	reactive oxygen species	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Histochemical staining indicated that LIL1 lesions displayed an abnormal accumulation of reactive oxygen species (ROS) and resulted from programmed cell death (PCD)
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	lesion mimic	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (LIL1) Gene in Rice.	Lesion mimic mutants (LMMs), such as LIL1 that was identified in an ethylmethane sulfonate mutagenized population of Indica rice (Oryza sativa L
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	leaf	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	A semi-dominant lesion mimic mutant als1 (apoptosis leaf and sheath 1) in rice was identified to demonstrate spontaneous lesions on the leaf blade and sheath
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	leaf	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	ALS1 was expressed mainly in the leaf blade and sheath, in which further study revealed that ALS1 was present in the vascular bundles
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	vascular bundle	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	ALS1 was expressed mainly in the leaf blade and sheath, in which further study revealed that ALS1 was present in the vascular bundles
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	resistance	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	Functional studies of ALS1 were conducted, including phylogenetic analysis, expression analysis, subcellular location and blast resistance identification
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	sheath	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	A semi-dominant lesion mimic mutant als1 (apoptosis leaf and sheath 1) in rice was identified to demonstrate spontaneous lesions on the leaf blade and sheath
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	blast	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	Functional studies of ALS1 were conducted, including phylogenetic analysis, expression analysis, subcellular location and blast resistance identification
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	blast resistance	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	Functional studies of ALS1 were conducted, including phylogenetic analysis, expression analysis, subcellular location and blast resistance identification
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	lesion	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	A semi-dominant lesion mimic mutant als1 (apoptosis leaf and sheath 1) in rice was identified to demonstrate spontaneous lesions on the leaf blade and sheath
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	lesion mimic	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	A semi-dominant lesion mimic mutant als1 (apoptosis leaf and sheath 1) in rice was identified to demonstrate spontaneous lesions on the leaf blade and sheath
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	defence	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	The mutation of ALS1 caused a constitutively activated defence response in als1
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	defence	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	The results of our study imply that ALS1 participate in a defence response resembling the common SA-, JA- and NH1- mediated defence responses in rice
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	defence response	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	The mutation of ALS1 caused a constitutively activated defence response in als1
LIL1|ALS1	Os07g0488400	LOC_Os07g30510	defence response	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	The results of our study imply that ALS1 participate in a defence response resembling the common SA-, JA- and NH1- mediated defence responses in rice
LIP1	Os10g0520700	LOC_Os10g37640	leaf	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.
LIP1	Os10g0520700	LOC_Os10g37640	leaf	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	Here we report the functional characterization of rice leaf inclination3 (LC3), a SPOC domain-containing transcription suppressor, in regulating leaf inclination through interacting with LIP1 (LC3-interacting protein 1), a HIT zinc finger domain-containing protein
LIP1	Os10g0520700	LOC_Os10g37640	auxin	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.
LIP1	Os10g0520700	LOC_Os10g37640	zinc	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	Here we report the functional characterization of rice leaf inclination3 (LC3), a SPOC domain-containing transcription suppressor, in regulating leaf inclination through interacting with LIP1 (LC3-interacting protein 1), a HIT zinc finger domain-containing protein
LIP19|OsbZIP38	Os05g0129300	LOC_Os05g03860	temperature	Low-temperature-dependent expression of a rice gene encoding a protein with a leucine-zipper motif	Expression of lip19 is positively regulated by low temperature, but not affected by high (40 degrees C) temperature
LIP19|OsbZIP38	Os05g0129300	LOC_Os05g03860	temperature	Low-temperature-dependent expression of a rice gene encoding a protein with a leucine-zipper motif	The possibility is suggested that Lip19 is a transcriptional factor that is positively controlled by low temperature
LIP19|OsbZIP38	Os05g0129300	LOC_Os05g03860	temperature	LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants	The rice low-temperature-induced lip19 gene encodes a 148-amino-acid basic region/leucine zipper (bZIP) protein, termed LIP19
LIP19|OsbZIP38	Os05g0129300	LOC_Os05g03860	temperature	LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants	Whereas the expression patterns of lip19 and OsOBF1 in response to low temperatures were totally opposite, the locations of their expression were almost identical
LIP19|OsbZIP38	Os05g0129300	LOC_Os05g03860	temperature	LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants	Based upon the presented data, we propose a model describing the low-temperature signal switching mediated by LIP19 in rice
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	leaf	Leaf Mutant 7 Encoding Heat Shock Protein OsHSP40 Regulates Leaf Size in Rice.	Leaf Mutant 7 Encoding Heat Shock Protein OsHSP40 Regulates Leaf Size in Rice.
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	leaf	Leaf Mutant 7 Encoding Heat Shock Protein OsHSP40 Regulates Leaf Size in Rice.	 Disruption of this gene in Oshsp40 mutants significantly reduced the leaf size compared with that of WT in rice
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	leaf	Leaf Mutant 7 Encoding Heat Shock Protein OsHSP40 Regulates Leaf Size in Rice.	 Microscopic examination showed that OsHSP40 modulated leaf size via regulating the veins formation and cell size/cell number
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	leaf	Leaf Mutant 7 Encoding Heat Shock Protein OsHSP40 Regulates Leaf Size in Rice.	 Therefore, the natural variation of OsHSP40 contributing to leaf size might be useful for rice breeding
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	breeding	Leaf Mutant 7 Encoding Heat Shock Protein OsHSP40 Regulates Leaf Size in Rice.	 Therefore, the natural variation of OsHSP40 contributing to leaf size might be useful for rice breeding
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	small leaves	Leaf Mutant 7 Encoding Heat Shock Protein OsHSP40 Regulates Leaf Size in Rice.	 Nucleotide diversity analysis indicated that a single nucleotide polymorphism (SNP) variation of C to T in the coding region of OsHSP40 may cause small leaves among rice accessions
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	leaf size	Leaf Mutant 7 Encoding Heat Shock Protein OsHSP40 Regulates Leaf Size in Rice	Leaf Mutant 7 Encoding Heat Shock Protein OsHSP40 Regulates Leaf Size in Rice
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	chloroplast	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 NAL11 loss-of-function mutants present impaired chloroplast development and gibberellin (GA) defects
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	development	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 NAL11 loss-of-function mutants present impaired chloroplast development and gibberellin (GA) defects
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	gibberellin	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	gibberellin	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 NAL11 loss-of-function mutants present impaired chloroplast development and gibberellin (GA) defects
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	architecture	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	architecture	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 A promising rare allele of NAL11 (NAL11(-923del-1552) ) positively selected in Aus cultivars was identified; this allele exhibited increased expression and generated relatively few tillers, thick stems, and large panicles, components of the ideal plant architecture (IPA)
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	homeostasis	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	ga	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 Genetic analyses support the hypothesis that NAL11 acts downstream of IPA1 to regulate IPA by modulating GA homeostasis, and NAL11 may be an essential complement for IPA1
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	 ga 	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 Genetic analyses support the hypothesis that NAL11 acts downstream of IPA1 to regulate IPA by modulating GA homeostasis, and NAL11 may be an essential complement for IPA1
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	cell cycle	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 NAL11 is involved in regulating the cell cycle and cell proliferation
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	chloroplast development	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 NAL11 loss-of-function mutants present impaired chloroplast development and gibberellin (GA) defects
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	Gibberellin	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	Gibberellin	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 NAL11 loss-of-function mutants present impaired chloroplast development and gibberellin (GA) defects
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	GA	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 Genetic analyses support the hypothesis that NAL11 acts downstream of IPA1 to regulate IPA by modulating GA homeostasis, and NAL11 may be an essential complement for IPA1
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	cell proliferation	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 NAL11 is involved in regulating the cell cycle and cell proliferation
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	plant architecture	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	plant architecture	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	 A promising rare allele of NAL11 (NAL11(-923del-1552) ) positively selected in Aus cultivars was identified; this allele exhibited increased expression and generated relatively few tillers, thick stems, and large panicles, components of the ideal plant architecture (IPA)
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	gibberellin homeostasis	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa)	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa)
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	few tillers	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa)	A promising rare allele of NAL11 (NAL11-923del-1552 ) positively selected in Aus cultivars was identified; this allele exhibited increased expression and generated relatively few tillers, thick stems, and large panicles, components of the ideal plant architecture (IPA).
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	thick stems	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa)	A promising rare allele of NAL11 (NAL11-923del-1552 ) positively selected in Aus cultivars was identified; this allele exhibited increased expression and generated relatively few tillers, thick stems, and large panicles, components of the ideal plant architecture (IPA).
LM7|OsHSP40|NAL11	Os07g0192300	LOC_Os07g09450	large panicles	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa)	A promising rare allele of NAL11 (NAL11-923del-1552 ) positively selected in Aus cultivars was identified; this allele exhibited increased expression and generated relatively few tillers, thick stems, and large panicles, components of the ideal plant architecture (IPA).
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	resistance	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	disease	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	disease resistance	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	cell death	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	leaf	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	spl33 exhibited programmed cell death-mediated cell death and early leaf senescence, as evidenced by analyses of four histochemical markers, namely H2O2 accumulation, cell death, callose accumulation and TUNEL-positive nuclei, and by four indicators, namely loss of chlorophyll, breakdown of chloroplasts, down-regulation of photosynthesis-related genes, and up-regulation of senescence-associated genes
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	leaf	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Transcriptome analysis of the spl33 mutant and its wild type provided further evidence for the biological effects of loss of SPL33 function in cell death, leaf senescence and defense responses in rice
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	leaf senescence	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	spl33 exhibited programmed cell death-mediated cell death and early leaf senescence, as evidenced by analyses of four histochemical markers, namely H2O2 accumulation, cell death, callose accumulation and TUNEL-positive nuclei, and by four indicators, namely loss of chlorophyll, breakdown of chloroplasts, down-regulation of photosynthesis-related genes, and up-regulation of senescence-associated genes
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	leaf senescence	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Transcriptome analysis of the spl33 mutant and its wild type provided further evidence for the biological effects of loss of SPL33 function in cell death, leaf senescence and defense responses in rice
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	early leaf senescence	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	spl33 exhibited programmed cell death-mediated cell death and early leaf senescence, as evidenced by analyses of four histochemical markers, namely H2O2 accumulation, cell death, callose accumulation and TUNEL-positive nuclei, and by four indicators, namely loss of chlorophyll, breakdown of chloroplasts, down-regulation of photosynthesis-related genes, and up-regulation of senescence-associated genes
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	resistance	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Defense responses were induced in the spl33 mutant, as shown by enhanced resistance to both the fungal pathogen Magnaporthe oryzae and the bacterial pathogen Xanthomonas oryzae pv
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	resistance	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Detailed analyses showed that reactive oxygen species accumulation may be the cause of cell death in the spl33 mutant, whereas uncontrolled activation of multiple innate immunity-related receptor genes and signaling molecules may be responsible for the enhanced disease resistance observed in spl33
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	defense	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Defense responses were induced in the spl33 mutant, as shown by enhanced resistance to both the fungal pathogen Magnaporthe oryzae and the bacterial pathogen Xanthomonas oryzae pv
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	defense	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Transcriptome analysis of the spl33 mutant and its wild type provided further evidence for the biological effects of loss of SPL33 function in cell death, leaf senescence and defense responses in rice
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	defense response	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Defense responses were induced in the spl33 mutant, as shown by enhanced resistance to both the fungal pathogen Magnaporthe oryzae and the bacterial pathogen Xanthomonas oryzae pv
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	defense response	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Transcriptome analysis of the spl33 mutant and its wild type provided further evidence for the biological effects of loss of SPL33 function in cell death, leaf senescence and defense responses in rice
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	disease	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Detailed analyses showed that reactive oxygen species accumulation may be the cause of cell death in the spl33 mutant, whereas uncontrolled activation of multiple innate immunity-related receptor genes and signaling molecules may be responsible for the enhanced disease resistance observed in spl33
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	disease resistance	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Detailed analyses showed that reactive oxygen species accumulation may be the cause of cell death in the spl33 mutant, whereas uncontrolled activation of multiple innate immunity-related receptor genes and signaling molecules may be responsible for the enhanced disease resistance observed in spl33
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	magnaporthe oryzae	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Defense responses were induced in the spl33 mutant, as shown by enhanced resistance to both the fungal pathogen Magnaporthe oryzae and the bacterial pathogen Xanthomonas oryzae pv
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	cell death	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	spl33 exhibited programmed cell death-mediated cell death and early leaf senescence, as evidenced by analyses of four histochemical markers, namely H2O2 accumulation, cell death, callose accumulation and TUNEL-positive nuclei, and by four indicators, namely loss of chlorophyll, breakdown of chloroplasts, down-regulation of photosynthesis-related genes, and up-regulation of senescence-associated genes
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	cell death	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Transcriptome analysis of the spl33 mutant and its wild type provided further evidence for the biological effects of loss of SPL33 function in cell death, leaf senescence and defense responses in rice
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	cell death	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Detailed analyses showed that reactive oxygen species accumulation may be the cause of cell death in the spl33 mutant, whereas uncontrolled activation of multiple innate immunity-related receptor genes and signaling molecules may be responsible for the enhanced disease resistance observed in spl33
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	zinc	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	SPL33 encodes a eukaryotic translation elongation factor 1 alpha (eEF1A)-like protein consisting of a non-functional zinc finger domain and three functional EF-Tu domains
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	innate immunity	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Detailed analyses showed that reactive oxygen species accumulation may be the cause of cell death in the spl33 mutant, whereas uncontrolled activation of multiple innate immunity-related receptor genes and signaling molecules may be responsible for the enhanced disease resistance observed in spl33
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	senescence	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Transcriptome analysis of the spl33 mutant and its wild type provided further evidence for the biological effects of loss of SPL33 function in cell death, leaf senescence and defense responses in rice
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	pathogen	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Defense responses were induced in the spl33 mutant, as shown by enhanced resistance to both the fungal pathogen Magnaporthe oryzae and the bacterial pathogen Xanthomonas oryzae pv
LMM5.1|SPL33	Os01g0116600	LOC_Os01g02720	reactive oxygen species	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice	Detailed analyses showed that reactive oxygen species accumulation may be the cause of cell death in the spl33 mutant, whereas uncontrolled activation of multiple innate immunity-related receptor genes and signaling molecules may be responsible for the enhanced disease resistance observed in spl33
LMM5.4	Os04g0595300	None	disease resistance	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.
LMM5.4	Os04g0595300	None	resistance	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.
LMM5.4	Os04g0595300	None	translation elongation factor	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.
LMM5.4	Os04g0595300	None	cell death	LMM5.1 and LMM5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	Taken together, these results suggest that the homologous eEF1A-like genes, LMM5.1 and LMM5.4, negatively affect cell death and disease resistance in rice.
LO9-177	Os03g0640400	LOC_Os03g43910	cell elongation	Rice Leaf Angle and Grain Size Are Affected by the OsBUL1 Transcriptional Activator Complex.	OsBUL1 COMPLEX1 (OsBC1) is a basic helix-loop-helix (bHLH) transcriptional activator that interacts with OsBUL1 only in the presence of LO9-177 forming a possible trimeric complex for cell elongation in the lamina joint of rice
LO9-177	Os03g0640400	LOC_Os03g43910	lamina	Rice Leaf Angle and Grain Size Are Affected by the OsBUL1 Transcriptional Activator Complex.	OsBUL1 COMPLEX1 (OsBC1) is a basic helix-loop-helix (bHLH) transcriptional activator that interacts with OsBUL1 only in the presence of LO9-177 forming a possible trimeric complex for cell elongation in the lamina joint of rice
LO9-177	Os03g0640400	LOC_Os03g43910	transcriptional activator	Rice Leaf Angle and Grain Size Are Affected by the OsBUL1 Transcriptional Activator Complex.	OsBUL1 COMPLEX1 (OsBC1) is a basic helix-loop-helix (bHLH) transcriptional activator that interacts with OsBUL1 only in the presence of LO9-177 forming a possible trimeric complex for cell elongation in the lamina joint of rice
LO9-177	Os03g0640400	LOC_Os03g43910	lamina joint	Rice Leaf Angle and Grain Size Are Affected by the OsBUL1 Transcriptional Activator Complex.	OsBUL1 COMPLEX1 (OsBC1) is a basic helix-loop-helix (bHLH) transcriptional activator that interacts with OsBUL1 only in the presence of LO9-177 forming a possible trimeric complex for cell elongation in the lamina joint of rice
LOG	Os01g0588900	LOC_Os01g40630	shoot	Direct control of shoot meristem activity by a cytokinin-activating enzyme	The LONELY GUY (LOG) gene of rice is required to maintain meristem activity and its loss of function causes premature termination of the shoot meristem
LOG	Os01g0588900	LOC_Os01g40630	shoot	Direct control of shoot meristem activity by a cytokinin-activating enzyme	LOG messenger RNA is specifically localized in shoot meristem tips, indicating the activation of cytokinins in a specific developmental domain
LOG	Os01g0588900	LOC_Os01g40630	meristem	Direct control of shoot meristem activity by a cytokinin-activating enzyme	The LONELY GUY (LOG) gene of rice is required to maintain meristem activity and its loss of function causes premature termination of the shoot meristem
LOG	Os01g0588900	LOC_Os01g40630	meristem	Direct control of shoot meristem activity by a cytokinin-activating enzyme	LOG messenger RNA is specifically localized in shoot meristem tips, indicating the activation of cytokinins in a specific developmental domain
LOG	Os01g0588900	LOC_Os01g40630	cytokinin	Direct control of shoot meristem activity by a cytokinin-activating enzyme	LOG encodes a novel cytokinin-activating enzyme that works in the final step of bioactive cytokinin synthesis
LOG	Os01g0588900	LOC_Os01g40630	cytokinin	Direct control of shoot meristem activity by a cytokinin-activating enzyme	Revising the long-held idea of multistep reactions, LOG directly converts inactive cytokinin nucleotides to the free-base forms, which are biologically active, by its cytokinin-specific phosphoribohydrolase activity
LOG	Os01g0588900	LOC_Os01g40630	cytokinin	Direct control of shoot meristem activity by a cytokinin-activating enzyme	LOG messenger RNA is specifically localized in shoot meristem tips, indicating the activation of cytokinins in a specific developmental domain
LowAC1	Os02g0167500	LOC_Os02g07070	starch	A novel rice dull gene, LowAC1, encodes an RNA recognition motif protein affecting Waxy(b) pre-mRNA splicing.	Overall, our data suggest that LowAC1 is a novel regulatory factor for starch synthesis in rice
LowAC1	Os02g0167500	LOC_Os02g07070	amylose content	A novel rice dull gene, LowAC1, encodes an RNA recognition motif protein affecting Waxy(b) pre-mRNA splicing.	Aside from low amylose content, lowac1 seeds included an amylopectin structure reducing short chains compared to that of WT seeds
LP1	Os09g0456100	LOC_Os09g28300	panicle	Identification of a Candidate Gene for Panicle Length in Rice (Oryza sativa L.) Via Association and Linkage Analysis.	Sequencing analysis of LP1 in two parents and 103 rice accessions indicated that SNP1 is associated with panicle length
LP1	Os09g0456100	LOC_Os09g28300	panicle	Identification of a Candidate Gene for Panicle Length in Rice (Oryza sativa L.) Via Association and Linkage Analysis.	The LP1 allele of Xiushui79 leads to reduced panicle length, whereas the allele of C-bao relieves the suppression of panicle length
LP1	Os09g0456100	LOC_Os09g28300	panicle	Identification of a Candidate Gene for Panicle Length in Rice (Oryza sativa L.) Via Association and Linkage Analysis.	LP1 and the elite alleles can be used to improve panicle length in rice
LP1	Os09g0456100	LOC_Os09g28300	panicle length	Identification of a Candidate Gene for Panicle Length in Rice (Oryza sativa L.) Via Association and Linkage Analysis.	Sequencing analysis of LP1 in two parents and 103 rice accessions indicated that SNP1 is associated with panicle length
LP1	Os09g0456100	LOC_Os09g28300	panicle length	Identification of a Candidate Gene for Panicle Length in Rice (Oryza sativa L.) Via Association and Linkage Analysis.	The LP1 allele of Xiushui79 leads to reduced panicle length, whereas the allele of C-bao relieves the suppression of panicle length
LP1	Os09g0456100	LOC_Os09g28300	panicle length	Identification of a Candidate Gene for Panicle Length in Rice (Oryza sativa L.) Via Association and Linkage Analysis.	LP1 and the elite alleles can be used to improve panicle length in rice
LP2	Os02g0615800	LOC_Os02g40240	reproductive	The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice	Low or undetectable levels of LP2 transcript and LP2-mediated reporter gene expression were observed in roots, mature seeds, and reproductive tissues
LP2	Os02g0615800	LOC_Os02g40240	seed	The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice	Low or undetectable levels of LP2 transcript and LP2-mediated reporter gene expression were observed in roots, mature seeds, and reproductive tissues
LP2	Os02g0615800	LOC_Os02g40240	seed	The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice	The LP2 promoter is highly responsive to light and only weak expression was detected in etiolated rice seedlings
LP2	Os02g0615800	LOC_Os02g40240	panicle	The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice	We have isolated and characterized the promoter of the rice Leaf Panicle 2 gene (LP2, Os02g40240)
LP2	Os02g0615800	LOC_Os02g40240	seedling	The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice	The LP2 promoter is highly responsive to light and only weak expression was detected in etiolated rice seedlings
LP2	Os02g0615800	LOC_Os02g40240	root	The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice	Low or undetectable levels of LP2 transcript and LP2-mediated reporter gene expression were observed in roots, mature seeds, and reproductive tissues
LP2	Os02g0615800	LOC_Os02g40240	leaf	The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice	We have isolated and characterized the promoter of the rice Leaf Panicle 2 gene (LP2, Os02g40240)
LP2	Os02g0615800	LOC_Os02g40240	drought sensitivity	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice
LP2	Os02g0615800	LOC_Os02g40240	drought	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice
LPA1	Os03g0237250	LOC_Os03g13400	tiller	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	LPA1 regulates tiller angle and leaf angle by controlling the adaxial growth of tiller node and lamina joint
LPA1	Os03g0237250	LOC_Os03g13400	tiller angle	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	LPA1 regulates tiller angle and leaf angle by controlling the adaxial growth of tiller node and lamina joint
LPA1	Os03g0237250	LOC_Os03g13400	ethylene	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	LPA1 is localized in the nucleus and functions as an active transcriptional repressor, an activity mainly conferred by a conserved ethylene response factor-associated amphiphilic repression-like motif
LPA1	Os03g0237250	LOC_Os03g13400	sheath	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	Expression pattern analysis suggested that LPA1 influences plant architecture by affecting the gravitropism of leaf sheath pulvinus and lamina joint
LPA1	Os03g0237250	LOC_Os03g13400	leaf	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	LPA1 regulates tiller angle and leaf angle by controlling the adaxial growth of tiller node and lamina joint
LPA1	Os03g0237250	LOC_Os03g13400	leaf	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	Expression pattern analysis suggested that LPA1 influences plant architecture by affecting the gravitropism of leaf sheath pulvinus and lamina joint
LPA1	Os03g0237250	LOC_Os03g13400	growth	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	LPA1 regulates tiller angle and leaf angle by controlling the adaxial growth of tiller node and lamina joint
LPA1	Os03g0237250	LOC_Os03g13400	lamina	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	LPA1 regulates tiller angle and leaf angle by controlling the adaxial growth of tiller node and lamina joint
LPA1	Os03g0237250	LOC_Os03g13400	lamina	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	Expression pattern analysis suggested that LPA1 influences plant architecture by affecting the gravitropism of leaf sheath pulvinus and lamina joint
LPA1	Os03g0237250	LOC_Os03g13400	shoot	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	Here, we report the cloning and characterization of the Loose Plant Architecture1 (LPA1) gene in rice, the functional ortholog of the AtIDD15/SHOOT GRAVITROPISM5 (SGR5) gene in Arabidopsis (Arabidopsis thaliana)
LPA1	Os03g0237250	LOC_Os03g13400	shoot	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	LPA1 was also found to affect shoot gravitropism
LPA1	Os03g0237250	LOC_Os03g13400	architecture	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	Here, we report the cloning and characterization of the Loose Plant Architecture1 (LPA1) gene in rice, the functional ortholog of the AtIDD15/SHOOT GRAVITROPISM5 (SGR5) gene in Arabidopsis (Arabidopsis thaliana)
LPA1	Os03g0237250	LOC_Os03g13400	architecture	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice	Expression pattern analysis suggested that LPA1 influences plant architecture by affecting the gravitropism of leaf sheath pulvinus and lamina joint
LPA1	Os03g0237250	LOC_Os03g13400	auxin	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	Genetic and biochemical data indicate that LPA1 suppresses the auxin signalling that interacts with C-22-hydroxylated and 6-deoxo BRs, which regulates lamina inclination independently of OsBRI1
LPA1	Os03g0237250	LOC_Os03g13400	auxin	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	RNA sequencing analysis and qRT-PCR indicate that LPA1 influences the expression of three OsPIN genes (OsPIN1a, OsPIN1c and OsPIN3a), which suggests that auxin flux might be an important factor in LPA1-mediated lamina inclination in rice
LPA1	Os03g0237250	LOC_Os03g13400	 BR 	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	Mutant lpa1 plants are hypersensitive to indole-3-acetic acid (IAA) during the lamina inclination response, which is suppressed by the brassinazole (Brz) inhibitor of C-22 hydroxylase involved in BR synthesis
LPA1	Os03g0237250	LOC_Os03g13400	lamina	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	This study explores the role of LPA1 in determining lamina inclination in rice
LPA1	Os03g0237250	LOC_Os03g13400	lamina	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	LPA1 acts as a positive regulator to suppress lamina bending
LPA1	Os03g0237250	LOC_Os03g13400	lamina	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	Genetic and biochemical data indicate that LPA1 suppresses the auxin signalling that interacts with C-22-hydroxylated and 6-deoxo BRs, which regulates lamina inclination independently of OsBRI1
LPA1	Os03g0237250	LOC_Os03g13400	lamina	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	Mutant lpa1 plants are hypersensitive to indole-3-acetic acid (IAA) during the lamina inclination response, which is suppressed by the brassinazole (Brz) inhibitor of C-22 hydroxylase involved in BR synthesis
LPA1	Os03g0237250	LOC_Os03g13400	lamina	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	A strong synergic effect is detected between lpa1 and d2 (the defective mutant for catalysis of C-23-hydroxylated BRs) during IAA-mediated lamina inclination
LPA1	Os03g0237250	LOC_Os03g13400	lamina	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	RNA sequencing analysis and qRT-PCR indicate that LPA1 influences the expression of three OsPIN genes (OsPIN1a, OsPIN1c and OsPIN3a), which suggests that auxin flux might be an important factor in LPA1-mediated lamina inclination in rice
LPA1	Os03g0237250	LOC_Os03g13400	seed	Novel allelic variant of Lpa1 gene associated with a significant reduction in seed phytic acid content in rice (Oryza sativa L.).	Novel allelic variant of Lpa1 gene associated with a significant reduction in seed phytic acid content in rice (Oryza sativa L.).
LPA1	Os03g0237250	LOC_Os03g13400	leaf	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 LPA1 expressed in pre-vascular cells of leaf primordia regulates genes associated with carbohydrate metabolism and cell enlargement
LPA1	Os03g0237250	LOC_Os03g13400	grain	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.
LPA1	Os03g0237250	LOC_Os03g13400	grain	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 Narrow metaxylem of lpa1 exhibit leaves curling on sunny day and convey drought tolerance but reduce grain yield in mature plants
LPA1	Os03g0237250	LOC_Os03g13400	resistance	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 However, the genetic combination of lpa1 with semi-dwarf mutant (dep1-ko or d2) offer optimal water supply and drought resistance without impacting grain-filling rates
LPA1	Os03g0237250	LOC_Os03g13400	grain yield	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 Narrow metaxylem of lpa1 exhibit leaves curling on sunny day and convey drought tolerance but reduce grain yield in mature plants
LPA1	Os03g0237250	LOC_Os03g13400	drought	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.
LPA1	Os03g0237250	LOC_Os03g13400	drought	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 Narrow metaxylem of lpa1 exhibit leaves curling on sunny day and convey drought tolerance but reduce grain yield in mature plants
LPA1	Os03g0237250	LOC_Os03g13400	drought	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 However, the genetic combination of lpa1 with semi-dwarf mutant (dep1-ko or d2) offer optimal water supply and drought resistance without impacting grain-filling rates
LPA1	Os03g0237250	LOC_Os03g13400	tolerance	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.
LPA1	Os03g0237250	LOC_Os03g13400	tolerance	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 Narrow metaxylem of lpa1 exhibit leaves curling on sunny day and convey drought tolerance but reduce grain yield in mature plants
LPA1	Os03g0237250	LOC_Os03g13400	grain filling	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.
LPA1	Os03g0237250	LOC_Os03g13400	yield	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 Narrow metaxylem of lpa1 exhibit leaves curling on sunny day and convey drought tolerance but reduce grain yield in mature plants
LPA1	Os03g0237250	LOC_Os03g13400	drought tolerance	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.
LPA1	Os03g0237250	LOC_Os03g13400	drought tolerance	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 Narrow metaxylem of lpa1 exhibit leaves curling on sunny day and convey drought tolerance but reduce grain yield in mature plants
LPA1	Os03g0237250	LOC_Os03g13400	architecture	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 We performed genetic combination of lpa1 with semi-dwarf mutant to offer the optimum rice architecture for more efficient water use
LPA1	Os03g0237250	LOC_Os03g13400	dwarf	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.
LPA1	Os03g0237250	LOC_Os03g13400	drought resistance	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 However, the genetic combination of lpa1 with semi-dwarf mutant (dep1-ko or d2) offer optimal water supply and drought resistance without impacting grain-filling rates
LPA1	Os03g0237250	LOC_Os03g13400	grain-filling	Narrow lpa1 Metaxylems Enhance Drought Tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	 However, the genetic combination of lpa1 with semi-dwarf mutant (dep1-ko or d2) offer optimal water supply and drought resistance without impacting grain-filling rates
LPL2	Os03g0143800|Os03g0143851	LOC_Os03g05020	plant height	Homologs of SCAR/WAVE complex components are required for epidermal cell morphogenesis in rice	The lpl2-1 also exhibited irregular stomata patterns, reduced plant height, and short panicles and roots.
LPL2	Os03g0143800|Os03g0143851	LOC_Os03g05020	panicle	Homologs of SCAR/WAVE complex components are required for epidermal cell morphogenesis in rice	The lpl2-1 also exhibited irregular stomata patterns, reduced plant height, and short panicles and roots.
LPL2	Os03g0143800|Os03g0143851	LOC_Os03g05020	root	Homologs of SCAR/WAVE complex components are required for epidermal cell morphogenesis in rice	The lpl2-1 also exhibited irregular stomata patterns, reduced plant height, and short panicles and roots.
LPL2	Os03g0143800|Os03g0143851	LOC_Os03g05020	epidermal cell morphogenesis	Homologs of SCAR/WAVE complex components are required for epidermal cell morphogenesis in rice	Collectively, the results indicate that LPL2 and LPL3 are two functionally conserved homologs of the SCAR/WAVE complex components, and that they play an important role in controlling epidermal cell morphogenesis in rice by organising F-actin.
LPL2	Os03g0143800|Os03g0143851	LOC_Os03g05020	development	Homologs of SCAR/WAVE complex components are required for epidermal cell morphogenesis in rice	lpl2-1 exhibits severe defects in epidermal PC lobe development
LPL3|DS8	Os08g0544500	LOC_Os08g43130	epidermal cell morphogenesis	Homologs of SCAR/WAVE complex components are required for epidermal cell morphogenesis in rice.	Collectively, the results indicate that LPL2 and LPL3 are two functionally conserved homologs of the SCAR/WAVE complex components, and that they play an important role in controlling epidermal cell morphogenesis in rice by organising F-actin.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	ATPase	The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.	The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	defense response	The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.	The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	cell death	The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.	The pathogenesis-related (PR) genes PBZ1 and PR1 were induced in lmr, which also showed enhanced resistance to rice blast (Magnaporthe oryzae) and bacterial blight (Xanthomonas oryzae pv. oryzae), suggesting LMR is a negative regulator of cell death in rice.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	PCD	The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.	The pathogenesis-related (PR) genes PBZ1 and PR1 were induced in lmr, which also showed enhanced resistance to rice blast (Magnaporthe oryzae) and bacterial blight (Xanthomonas oryzae pv. oryzae), suggesting LMR is a negative regulator of cell death in rice.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	lesion mimic	The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.	The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	ATPase	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	ATPase	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Here we report the identification and characterization of a MVBs-localized AAA ATPase LRD6-6 in rice
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	ATPase	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The ATPase activity and homo-dimerization of LRD6-6 is essential for its regulation on plant immunity and cell death
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	ATPase	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Collectively, our study shows that the AAA ATPase LRD6-6 inhibits plant immunity and cell death most likely through modulating MVBs-mediated vesicular trafficking in rice
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	cell death	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	cell death	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Disruption of LRD6-6 leads to enhanced immunity and cell death in rice
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	cell death	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The ATPase activity and homo-dimerization of LRD6-6 is essential for its regulation on plant immunity and cell death
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	cell death	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Collectively, our study shows that the AAA ATPase LRD6-6 inhibits plant immunity and cell death most likely through modulating MVBs-mediated vesicular trafficking in rice
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	immunity	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	immunity	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Disruption of LRD6-6 leads to enhanced immunity and cell death in rice
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	immunity	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The ATPase activity and homo-dimerization of LRD6-6 is essential for its regulation on plant immunity and cell death
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	immunity	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Collectively, our study shows that the AAA ATPase LRD6-6 inhibits plant immunity and cell death most likely through modulating MVBs-mediated vesicular trafficking in rice
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	R protein	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The LRD6-6 protein co-localizes with the MVBs marker protein RabF1/ARA6 and interacts with ESCRT-III components OsSNF7 and OsVPS2
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	vesicular	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	vesicular	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Further analysis reveals that LRD6-6 is required for MVBs-mediated vesicular trafficking and inhibits the biosynthesis of antimicrobial compounds
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	vesicular	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Collectively, our study shows that the AAA ATPase LRD6-6 inhibits plant immunity and cell death most likely through modulating MVBs-mediated vesicular trafficking in rice
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	vesicular trafficking	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	vesicular trafficking	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Further analysis reveals that LRD6-6 is required for MVBs-mediated vesicular trafficking and inhibits the biosynthesis of antimicrobial compounds
LRD6-6|LMR	Os06g0130000	LOC_Os06g03940	vesicular trafficking	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	Collectively, our study shows that the AAA ATPase LRD6-6 inhibits plant immunity and cell death most likely through modulating MVBs-mediated vesicular trafficking in rice
LRK1	Os02g0154200	LOC_Os02g05980	panicle	Over-expression of the rice LRK1 gene improves quantitative yield components	Our data showed that rice LRK1 is a plasma membrane protein expressed constitutively in leaves, young panicles, roots and culms
LRK1	Os02g0154200	LOC_Os02g05980	panicle	Over-expression of the rice LRK1 gene improves quantitative yield components	The over-expression of rice LRK1 results in increased panicles, spikelets per panicle, weight per grain and enhanced cellular proliferation, leading to a 27
LRK1	Os02g0154200	LOC_Os02g05980	spikelet	Over-expression of the rice LRK1 gene improves quantitative yield components	The over-expression of rice LRK1 results in increased panicles, spikelets per panicle, weight per grain and enhanced cellular proliferation, leading to a 27
LRK1	Os02g0154200	LOC_Os02g05980	culm	Over-expression of the rice LRK1 gene improves quantitative yield components	Our data showed that rice LRK1 is a plasma membrane protein expressed constitutively in leaves, young panicles, roots and culms
LRK1	Os02g0154200	LOC_Os02g05980	yield	Over-expression of the rice LRK1 gene improves quantitative yield components	The functional characterization of rice LRK1 facilitates an understanding of the mechanisms involved in cereal crop yield, and may have utility in improving grain yield in cereal crops
LRK1	Os02g0154200	LOC_Os02g05980	yield	Over-expression of the rice LRK1 gene improves quantitative yield components	Over-expression of the rice LRK1 gene improves quantitative yield components
LRK1	Os02g0154200	LOC_Os02g05980	gibberellin	Overexpression of rice LRK1 restricts internode elongation by down-regulating OsKO2	Analyses of gene expression demonstrated that LRK1 restricts gibberellin biosynthesis during the internode elongation process by down-regulation of the gibberellin biosynthetic gene coding for ent-kaurene oxidase
LRK1	Os02g0154200	LOC_Os02g05980	root	Over-expression of the rice LRK1 gene improves quantitative yield components	Our data showed that rice LRK1 is a plasma membrane protein expressed constitutively in leaves, young panicles, roots and culms
LRK1	Os02g0154200	LOC_Os02g05980	cellular proliferation	Over-expression of the rice LRK1 gene improves quantitative yield components	The over-expression of rice LRK1 results in increased panicles, spikelets per panicle, weight per grain and enhanced cellular proliferation, leading to a 27
LRK1	Os02g0154200	LOC_Os02g05980	cellular proliferation	Over-expression of the rice LRK1 gene improves quantitative yield components	Our data suggest that rice LRK1 regulates rice branch number by enhancing cellular proliferation
LRK1	Os02g0154200	LOC_Os02g05980	grain yield	Over-expression of the rice LRK1 gene improves quantitative yield components	The functional characterization of rice LRK1 facilitates an understanding of the mechanisms involved in cereal crop yield, and may have utility in improving grain yield in cereal crops
LRK1	Os02g0154200	LOC_Os02g05980	spikelets per panicle	Over-expression of the rice LRK1 gene improves quantitative yield components	The over-expression of rice LRK1 results in increased panicles, spikelets per panicle, weight per grain and enhanced cellular proliferation, leading to a 27
LRK1	Os02g0154200	LOC_Os02g05980	grain	Over-expression of the rice LRK1 gene improves quantitative yield components	The over-expression of rice LRK1 results in increased panicles, spikelets per panicle, weight per grain and enhanced cellular proliferation, leading to a 27
LRK1	Os02g0154200	LOC_Os02g05980	grain	Over-expression of the rice LRK1 gene improves quantitative yield components	The functional characterization of rice LRK1 facilitates an understanding of the mechanisms involved in cereal crop yield, and may have utility in improving grain yield in cereal crops
LRK1	Os02g0154200	LOC_Os02g05980	leaf	Genome-Wide Association Study Unravels LRK1 as a Dark Respiration Regulator in Rice ( Oryza sativa L.)	This study demonstrates a substantial natural variation of Rd in rice and that the LRK1 gene can regulate leaf dark respiratory fluxes, especially under high temperature
LRK1	Os02g0154200	LOC_Os02g05980	temperature	Genome-Wide Association Study Unravels LRK1 as a Dark Respiration Regulator in Rice ( Oryza sativa L.)	A rice lrk1 mutant shows only ~37% Rd of that of WT and retarded growth following exposure to 35 C for 30 days, but only 24% reduction in growth was recorded under normal temperature (25 C)
LRK1	Os02g0154200	LOC_Os02g05980	temperature	Genome-Wide Association Study Unravels LRK1 as a Dark Respiration Regulator in Rice ( Oryza sativa L.)	This study demonstrates a substantial natural variation of Rd in rice and that the LRK1 gene can regulate leaf dark respiratory fluxes, especially under high temperature
LRK1	Os02g0154200	LOC_Os02g05980	growth	Genome-Wide Association Study Unravels LRK1 as a Dark Respiration Regulator in Rice ( Oryza sativa L.)	A rice lrk1 mutant shows only ~37% Rd of that of WT and retarded growth following exposure to 35 C for 30 days, but only 24% reduction in growth was recorded under normal temperature (25 C)
LRK1	Os02g0154200	LOC_Os02g05980	receptor kinase	Genome-Wide Association Study Unravels LRK1 as a Dark Respiration Regulator in Rice ( Oryza sativa L.)	Particularly, we observed that the LRK1 gene, annotated as leucine rich repeat receptor kinase, was up-regulated four times
LRK2	Os02g0154000	LOC_Os02g05970	seedlings	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Moreover, ectopic expression of LRK2 seedlings resulted in increased tiller development
LRK2	Os02g0154000	LOC_Os02g05970	tiller	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.
LRK2	Os02g0154000	LOC_Os02g05970	tiller	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Moreover, ectopic expression of LRK2 seedlings resulted in increased tiller development
LRK2	Os02g0154000	LOC_Os02g05970	tiller	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	These results suggest that LRK2 functions as a positive regulator of the drought stress response and tiller development via increased branch development in rice
LRK2	Os02g0154000	LOC_Os02g05970	development	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Moreover, ectopic expression of LRK2 seedlings resulted in increased tiller development
LRK2	Os02g0154000	LOC_Os02g05970	development	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	These results suggest that LRK2 functions as a positive regulator of the drought stress response and tiller development via increased branch development in rice
LRK2	Os02g0154000	LOC_Os02g05970	drought	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.
LRK2	Os02g0154000	LOC_Os02g05970	drought	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Transgenic plants overexpressing LRK2 exhibited enhanced tolerance to drought stress due to an increased number of lateral roots compared to the wild-type at the vegetative stage
LRK2	Os02g0154000	LOC_Os02g05970	drought	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	These results suggest that LRK2 functions as a positive regulator of the drought stress response and tiller development via increased branch development in rice
LRK2	Os02g0154000	LOC_Os02g05970	tolerance	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.
LRK2	Os02g0154000	LOC_Os02g05970	tolerance	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Transgenic plants overexpressing LRK2 exhibited enhanced tolerance to drought stress due to an increased number of lateral roots compared to the wild-type at the vegetative stage
LRK2	Os02g0154000	LOC_Os02g05970	vegetative	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Transgenic plants overexpressing LRK2 exhibited enhanced tolerance to drought stress due to an increased number of lateral roots compared to the wild-type at the vegetative stage
LRK2	Os02g0154000	LOC_Os02g05970	drought tolerance	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.
LRK2	Os02g0154000	LOC_Os02g05970	stress	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Transgenic plants overexpressing LRK2 exhibited enhanced tolerance to drought stress due to an increased number of lateral roots compared to the wild-type at the vegetative stage
LRK2	Os02g0154000	LOC_Os02g05970	stress	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	These results suggest that LRK2 functions as a positive regulator of the drought stress response and tiller development via increased branch development in rice
LRK2	Os02g0154000	LOC_Os02g05970	lateral root	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Transgenic plants overexpressing LRK2 exhibited enhanced tolerance to drought stress due to an increased number of lateral roots compared to the wild-type at the vegetative stage
LRK2	Os02g0154000	LOC_Os02g05970	tiller number	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.
LRK2	Os02g0154000	LOC_Os02g05970	drought stress	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Transgenic plants overexpressing LRK2 exhibited enhanced tolerance to drought stress due to an increased number of lateral roots compared to the wild-type at the vegetative stage
LRK2	Os02g0154000	LOC_Os02g05970	drought stress	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	These results suggest that LRK2 functions as a positive regulator of the drought stress response and tiller development via increased branch development in rice
LRK2	Os02g0154000	LOC_Os02g05970	drought stress	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Transgenic plants overexpressing LRK2 exhibited enhanced tolerance to drought stress due to an increased number of lateral roots compared to the wild-type at the vegetative stage
LRK2	Os02g0154000	LOC_Os02g05970	drought stress	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	These results suggest that LRK2 functions as a positive regulator of the drought stress response and tiller development via increased branch development in rice
LRK2	Os02g0154000	LOC_Os02g05970	Kinase	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.
LRK2	Os02g0154000	LOC_Os02g05970	drought stress response	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	These results suggest that LRK2 functions as a positive regulator of the drought stress response and tiller development via increased branch development in rice
LRK2	Os02g0154000	LOC_Os02g05970	stress response	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	These results suggest that LRK2 functions as a positive regulator of the drought stress response and tiller development via increased branch development in rice
LS1	Os11g0153900	LOC_Os11g05570	leaf	DNA damage and reactive oxygen species cause cell death in the rice local lesions 1 mutant under high light and high temperature.	DNA damage caused by HLHT stress induces ROS accumulation, which causes the injury and apoptosis of leaf cells in the ls1 mutant
LS1	Os11g0153900	LOC_Os11g05570	map-based cloning	DNA damage and reactive oxygen species cause cell death in the rice local lesions 1 mutant under high light and high temperature.	<U+2022> We characterized and cloned LS1 by map-based cloning and genetic complementation
LS1	Os11g0153900	LOC_Os11g05570	stress	DNA damage and reactive oxygen species cause cell death in the rice local lesions 1 mutant under high light and high temperature.	TUNEL and comet assays indicated that mutation of LS1 led to severe DNA damage under HLHT stress
LS1	Os11g0153900	LOC_Os11g05570	stress	DNA damage and reactive oxygen species cause cell death in the rice local lesions 1 mutant under high light and high temperature.	Furthermore, we found excessive reactive oxygen species (ROS) accumulation in the ls1 mutant under HLHT stress
LS1	Os11g0153900	LOC_Os11g05570	stress	DNA damage and reactive oxygen species cause cell death in the rice local lesions 1 mutant under high light and high temperature.	DNA damage caused by HLHT stress induces ROS accumulation, which causes the injury and apoptosis of leaf cells in the ls1 mutant
LS1	Os11g0153900	LOC_Os11g05570	reactive oxygen species	DNA damage and reactive oxygen species cause cell death in the rice local lesions 1 mutant under high light and high temperature.	Furthermore, we found excessive reactive oxygen species (ROS) accumulation in the ls1 mutant under HLHT stress
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Mutation in OsNIP2;1 (Lsi1, a silicon influx transporter) significantly decreases arsenite uptake
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	The rice (Oryza sativa) silicon transporter Lsi1 (OsNIP2;1, an aquaporin channel) is the major entry route of arsenite into rice roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	The rice (Oryza sativa) silicon transporter Lsi1 (OsNIP2;1, an aquaporin channel) is the major entry route of arsenite into rice roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	Spatial distribution and temporal variation of the rice silicon transporter Lsi1	Recently, a gene (Low silicon rice1 [Lsi1]) encoding a Si transporter was identified in rice roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	Spatial distribution and temporal variation of the rice silicon transporter Lsi1	Consistent with the Si uptake pattern, Lsi1 expression and distribution of the Lsi1 protein were found only in the basal zone of roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	Spatial distribution and temporal variation of the rice silicon transporter Lsi1	In the basal zones of the seminal, crown, and lateral roots, the Lsi1 protein showed a polar localization at the distal side of both the exodermis and endodermis, where the Casparian bands are formed
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species	Recent studies have shown that arsenite is taken up by rice (Oryza sativa) roots through two silicon transporters, Lsi1 (the aquaporin NIP2;1) and Lsi2 (an efflux carrier)
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species	The results demonstrate that Lsi1 mediates the uptake of undissociated methylated As in rice roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice	Herein, we show evidence that the uptake of selenite, a main bioavailable form of Se in paddy soils, is mediated by a silicon (Si) influx transporter Lsi1 (OsNIP2;1) in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice	Immunostaining with Lsi1 and Lsi2 antibodies revealed a similar pattern of subcellular localization of these two Si transporters in both varieties; Lsi1 and Lsi2 were localized at the distal and proximal sides, respectively, of both exodermis and endodermis of the roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	arsenite	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	The rice (Oryza sativa) silicon transporter Lsi1 (OsNIP2;1, an aquaporin channel) is the major entry route of arsenite into rice roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	arsenite	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	Whether Lsi1 also mediates arsenite efflux was investigated
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	arsenite	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	*Expression of Lsi1 in Xenopus laevis oocytes enhanced arsenite efflux, indicating that Lsi1 facilitates arsenite transport bidirectionally
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	arsenite	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	A rice mutant defective in Lsi1 (lsi1) extruded significantly less arsenite than the wild-type rice and, as a result, accumulated more arsenite in the roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	arsenite	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	*We conclude that Lsi1 plays a role in arsenite efflux in rice roots exposed to arsenate
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	arsenite	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	The role of the rice aquaporin Lsi1 in arsenite efflux from roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	The rice (Oryza sativa) silicon transporter Lsi1 (OsNIP2;1, an aquaporin channel) is the major entry route of arsenite into rice roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	An efflux transporter of silicon in rice	A gene, Lsi1, that encodes a silicon influx transporter has been identified in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	An efflux transporter of silicon in rice	Here we describe a previously uncharacterized gene, low silicon rice 2 (Lsi2), which has no similarity to Lsi1
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	lateral root	Spatial distribution and temporal variation of the rice silicon transporter Lsi1	In the basal zones of the seminal, crown, and lateral roots, the Lsi1 protein showed a polar localization at the distal side of both the exodermis and endodermis, where the Casparian bands are formed
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species	Recent studies have shown that arsenite is taken up by rice (Oryza sativa) roots through two silicon transporters, Lsi1 (the aquaporin NIP2;1) and Lsi2 (an efflux carrier)
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	A rice mutant defective in Lsi1 (lsi1) extruded significantly less arsenite than the wild-type rice and, as a result, accumulated more arsenite in the roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	*We conclude that Lsi1 plays a role in arsenite efflux in rice roots exposed to arsenate
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	The role of the rice aquaporin Lsi1 in arsenite efflux from roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	shoot	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Mutation in Lsi2 had a much greater impact on arsenic accumulation in shoots and grain in field-grown rice than Lsi1
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	Spatial distribution and temporal variation of the rice silicon transporter Lsi1	Recently, a gene (Low silicon rice1 [Lsi1]) encoding a Si transporter was identified in rice roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	Spatial distribution and temporal variation of the rice silicon transporter Lsi1	Spatial distribution and temporal variation of the rice silicon transporter Lsi1
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice	Herein, we show evidence that the uptake of selenite, a main bioavailable form of Se in paddy soils, is mediated by a silicon (Si) influx transporter Lsi1 (OsNIP2;1) in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice	Taken together, our results indicate that Si influx transporter OsNIP2;1 is permeable to selenite
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species	Recent studies have shown that arsenite is taken up by rice (Oryza sativa) roots through two silicon transporters, Lsi1 (the aquaporin NIP2;1) and Lsi2 (an efflux carrier)
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	Spatial distribution and temporal variation of the rice silicon transporter Lsi1	Recently, a gene (Low silicon rice1 [Lsi1]) encoding a Si transporter was identified in rice roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	Spatial distribution and temporal variation of the rice silicon transporter Lsi1	Spatial distribution and temporal variation of the rice silicon transporter Lsi1
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	An efflux transporter of silicon in rice	A gene, Lsi1, that encodes a silicon influx transporter has been identified in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	grain	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Mutation in Lsi2 had a much greater impact on arsenic accumulation in shoots and grain in field-grown rice than Lsi1
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice	The expression of two Si transporter genes (Low silicon rice 1 [Lsi1] and Lsi2) investigated using real-time reverse transcription polymerase chain reaction revealed higher expression of both genes in Nipponbare than in Kasalath
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	arsenite	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species	Recent studies have shown that arsenite is taken up by rice (Oryza sativa) roots through two silicon transporters, Lsi1 (the aquaporin NIP2;1) and Lsi2 (an efflux carrier)
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Mutation in OsNIP2;1 (Lsi1, a silicon influx transporter) significantly decreases arsenite uptake
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	crown	Spatial distribution and temporal variation of the rice silicon transporter Lsi1	In the basal zones of the seminal, crown, and lateral roots, the Lsi1 protein showed a polar localization at the distal side of both the exodermis and endodermis, where the Casparian bands are formed
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	A silicon transporter in rice	Here we describe the Low silicon rice 1 (Lsi1) gene, which controls silicon accumulation in rice, a typical silicon-accumulating plant
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	A silicon transporter in rice	Suppression of Lsi1 expression resulted in reduced silicon uptake
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	A silicon transporter in rice	Furthermore, expression of Lsi1 in Xenopus oocytes showed transport activity for silicon only
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice	The expression of two Si transporter genes (Low silicon rice 1 [Lsi1] and Lsi2) investigated using real-time reverse transcription polymerase chain reaction revealed higher expression of both genes in Nipponbare than in Kasalath
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice	Immunostaining with Lsi1 and Lsi2 antibodies revealed a similar pattern of subcellular localization of these two Si transporters in both varieties; Lsi1 and Lsi2 were localized at the distal and proximal sides, respectively, of both exodermis and endodermis of the roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	shoot	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice	Defect of OsNIP2;1 resulted in a significant decrease in the Se concentration of the shoots and xylem sap when selenite was given
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	arsenite	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Mutation in OsNIP2;1 (Lsi1, a silicon influx transporter) significantly decreases arsenite uptake
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	xylem	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice	Defect of OsNIP2;1 resulted in a significant decrease in the Se concentration of the shoots and xylem sap when selenite was given
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	seedlings	High silicon accumulation in the shoot is required for down-regulating the expression of Si transporter genes in rice.	There was a negative correlation between the expression level of OsLsi1 and OsLsi2 and shoot Si accumulation when the rice seedlings were exposed to different Si supply conditions
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	High silicon accumulation in the shoot is required for down-regulating the expression of Si transporter genes in rice.	A split root experiment showed that the expression of both OsLsi1 and OsLsi2 was also down-regulated in half the roots without direct Si exposure when the other half roots were exposed to Si
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	High silicon accumulation in the shoot is required for down-regulating the expression of Si transporter genes in rice.	In conclusion, the Si-induced down-regulation of Si transporter genes is controlled by shoot Si, not root Si, and that the region between -327 to -292 in the OsLsi1 promoter is involved in this regulation of OsLsi1 expression in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	shoot	High silicon accumulation in the shoot is required for down-regulating the expression of Si transporter genes in rice.	There was a negative correlation between the expression level of OsLsi1 and OsLsi2 and shoot Si accumulation when the rice seedlings were exposed to different Si supply conditions
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	shoot	High silicon accumulation in the shoot is required for down-regulating the expression of Si transporter genes in rice.	In conclusion, the Si-induced down-regulation of Si transporter genes is controlled by shoot Si, not root Si, and that the region between -327 to -292 in the OsLsi1 promoter is involved in this regulation of OsLsi1 expression in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	High silicon accumulation in the shoot is required for down-regulating the expression of Si transporter genes in rice.	In conclusion, the Si-induced down-regulation of Si transporter genes is controlled by shoot Si, not root Si, and that the region between -327 to -292 in the OsLsi1 promoter is involved in this regulation of OsLsi1 expression in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	seedlings	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	There was a negative correlation between the expression level of OsLsi1 and OsLsi2 and shoot Si accumulation when the rice seedlings were exposed to different Si supply conditions
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	A split root experiment showed that the expression of both OsLsi1 and OsLsi2 was also down-regulated in half the roots without direct Si exposure when the other half of the roots were exposed to Si
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	In conclusion, the Si-induced down-regulation of Si transporter genes is controlled by shoot Si, not root Si, and the region between -327 and -292 in the OsLsi1 promoter is involved in this regulation of OsLsi1 expression in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	shoot	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	There was a negative correlation between the expression level of OsLsi1 and OsLsi2 and shoot Si accumulation when the rice seedlings were exposed to different Si supply conditions
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	shoot	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	In conclusion, the Si-induced down-regulation of Si transporter genes is controlled by shoot Si, not root Si, and the region between -327 and -292 in the OsLsi1 promoter is involved in this regulation of OsLsi1 expression in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	In conclusion, the Si-induced down-regulation of Si transporter genes is controlled by shoot Si, not root Si, and the region between -327 and -292 in the OsLsi1 promoter is involved in this regulation of OsLsi1 expression in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transcription factor	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress	 Our results suggest that when overexpressed Lsi1 in cold-sensitive rice, it possibility regulates the transcription factor OsWRKY53 in addition to the genes involved in the ROS metabolism, thus mediating resistance to chilling stress
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	resistance	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	resistance	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress	 Our results suggest that when overexpressed Lsi1 in cold-sensitive rice, it possibility regulates the transcription factor OsWRKY53 in addition to the genes involved in the ROS metabolism, thus mediating resistance to chilling stress
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	stress	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	stress	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress	 Our results suggest that when overexpressed Lsi1 in cold-sensitive rice, it possibility regulates the transcription factor OsWRKY53 in addition to the genes involved in the ROS metabolism, thus mediating resistance to chilling stress
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	chilling	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	chilling	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress	 Our results suggest that when overexpressed Lsi1 in cold-sensitive rice, it possibility regulates the transcription factor OsWRKY53 in addition to the genes involved in the ROS metabolism, thus mediating resistance to chilling stress
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transcriptional regulator	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	tolerance	Lsi1 modulates the antioxidant capacity of rice and protects against ultraviolet-B radiation.	 Our results demonstrate that Lsi1 overexpression or interference causes changes in both miRNA expression and antioxidant capacity in rice, and therefore modulates rice tolerance to UV-B radiation
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	Lsi1 modulates the antioxidant capacity of rice and protects against ultraviolet-B radiation.	 In rice, the accumulation of Si is controlled by the low silicon rice 1 (Lsi1) gene; overexpression of Lsi1 (Lsi1-OX) increases Si uptake and accumulation, while the reverse is observed in Lsi1-RNA interference (Lsi1-RNAi) transgenic rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	Altered root structure affects both expression and cellular localization of transporters for mineral element uptake in rice.	 Furthermore, the cellular localization of OsLsi1 was altered; OsLsi1 localized at the root exodermis of the wild-type rice was changed to be localized to other cell layers of the mutant roots
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	transporter	Altered root structure affects both expression and cellular localization of transporters for mineral element uptake in rice.	 The expression level of some transporter genes including OsLsi1 and OsLsi2 for Si uptake and OsNramp5 for Mn uptake was significantly decreased in the mutant compared with the wild-type rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	root	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	 In summary, our results reveal that Si deposition at root endodermis and its resultant reduction of Na+ bypass flow is modulated by OsLsi1 and OsLsi2 and regulated by the expression of OsLsi1 and OsLsi2, implying that root Si deposition could be an active and physiologically-regulated process in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	salt	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	 In this study, we investigated the roles of OsLsi1 and OsLsi2 in Si-induced reduction of bypass flow and its resultant alleviation of salt stress by using lsi1 and lsi2 mutants (defective in OsLsi1 and OsLsi2, respectively) and their wild types (WTs)
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	salt stress	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	 In this study, we investigated the roles of OsLsi1 and OsLsi2 in Si-induced reduction of bypass flow and its resultant alleviation of salt stress by using lsi1 and lsi2 mutants (defective in OsLsi1 and OsLsi2, respectively) and their wild types (WTs)
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	stress	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	 In this study, we investigated the roles of OsLsi1 and OsLsi2 in Si-induced reduction of bypass flow and its resultant alleviation of salt stress by using lsi1 and lsi2 mutants (defective in OsLsi1 and OsLsi2, respectively) and their wild types (WTs)
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	silicon	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	leaf	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 When OsLsi1 was ectopically expressed in the shoots, it showed polar localization at the xylem parenchyma cells of the basal node and leaf sheath, but not at the phloem companion cells
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	xylem	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 When OsLsi1 was ectopically expressed in the shoots, it showed polar localization at the xylem parenchyma cells of the basal node and leaf sheath, but not at the phloem companion cells
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	R protein	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 The polar localization of both OsLsi1 and OsLsi2 was not altered by Si supply, but their protein abundance was reduced
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	R protein	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 The polar localization of OsLsi1 and OsLsi2 was not altered by inhibition of clathrin-mediated endocytosis (CME) by dominant-negative induction of dynamin-related protein1A and knockout of mu subunit of adaptor protein 2 complex, although the knockout mutants of OsAP2M gene showed dwarf phenotype
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	dwarf	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 The polar localization of OsLsi1 and OsLsi2 was not altered by inhibition of clathrin-mediated endocytosis (CME) by dominant-negative induction of dynamin-related protein1A and knockout of mu subunit of adaptor protein 2 complex, although the knockout mutants of OsAP2M gene showed dwarf phenotype
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	phloem	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 When OsLsi1 was ectopically expressed in the shoots, it showed polar localization at the xylem parenchyma cells of the basal node and leaf sheath, but not at the phloem companion cells
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	node	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 When OsLsi1 was ectopically expressed in the shoots, it showed polar localization at the xylem parenchyma cells of the basal node and leaf sheath, but not at the phloem companion cells
Lsi1|OsNIP2;1|OsLsi1	Os02g0745100	LOC_Os02g51110	xylem parenchyma	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 When OsLsi1 was ectopically expressed in the shoots, it showed polar localization at the xylem parenchyma cells of the basal node and leaf sheath, but not at the phloem companion cells
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	root	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice	Immunostaining with Lsi1 and Lsi2 antibodies revealed a similar pattern of subcellular localization of these two Si transporters in both varieties; Lsi1 and Lsi2 were localized at the distal and proximal sides, respectively, of both exodermis and endodermis of the roots
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	transporter	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Furthermore, in the rice mutants defective in the silicon efflux transporter Lsi2, arsenite transport to the xylem and accumulation in shoots and grain decreased greatly
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	arsenite	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species	Recent studies have shown that arsenite is taken up by rice (Oryza sativa) roots through two silicon transporters, Lsi1 (the aquaporin NIP2;1) and Lsi2 (an efflux carrier)
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	transporter	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice	The expression of two Si transporter genes (Low silicon rice 1 [Lsi1] and Lsi2) investigated using real-time reverse transcription polymerase chain reaction revealed higher expression of both genes in Nipponbare than in Kasalath
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	transporter	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice	Immunostaining with Lsi1 and Lsi2 antibodies revealed a similar pattern of subcellular localization of these two Si transporters in both varieties; Lsi1 and Lsi2 were localized at the distal and proximal sides, respectively, of both exodermis and endodermis of the roots
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	root	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species	Recent studies have shown that arsenite is taken up by rice (Oryza sativa) roots through two silicon transporters, Lsi1 (the aquaporin NIP2;1) and Lsi2 (an efflux carrier)
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	transporter	An efflux transporter of silicon in rice	Expression of Lsi2 in Xenopus oocytes did not result in influx transport activity for silicon, but preloading of the oocytes with silicon resulted in a release of silicon, indicating that Lsi2 is a silicon efflux transporter
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	arsenite	The role of the rice aquaporin Lsi1 in arsenite efflux from roots	By contrast, Lsi2 mutation had little effect on arsenite efflux to the external medium
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	transporter	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species	Recent studies have shown that arsenite is taken up by rice (Oryza sativa) roots through two silicon transporters, Lsi1 (the aquaporin NIP2;1) and Lsi2 (an efflux carrier)
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	silicon	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Furthermore, in the rice mutants defective in the silicon efflux transporter Lsi2, arsenite transport to the xylem and accumulation in shoots and grain decreased greatly
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	silicon	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species	Recent studies have shown that arsenite is taken up by rice (Oryza sativa) roots through two silicon transporters, Lsi1 (the aquaporin NIP2;1) and Lsi2 (an efflux carrier)
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	arsenite	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Furthermore, in the rice mutants defective in the silicon efflux transporter Lsi2, arsenite transport to the xylem and accumulation in shoots and grain decreased greatly
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	shoot	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Furthermore, in the rice mutants defective in the silicon efflux transporter Lsi2, arsenite transport to the xylem and accumulation in shoots and grain decreased greatly
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	shoot	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Mutation in Lsi2 had a much greater impact on arsenic accumulation in shoots and grain in field-grown rice than Lsi1
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	silicon	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice	The expression of two Si transporter genes (Low silicon rice 1 [Lsi1] and Lsi2) investigated using real-time reverse transcription polymerase chain reaction revealed higher expression of both genes in Nipponbare than in Kasalath
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	grain	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Furthermore, in the rice mutants defective in the silicon efflux transporter Lsi2, arsenite transport to the xylem and accumulation in shoots and grain decreased greatly
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	grain	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Mutation in Lsi2 had a much greater impact on arsenic accumulation in shoots and grain in field-grown rice than Lsi1
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	xylem	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain	Furthermore, in the rice mutants defective in the silicon efflux transporter Lsi2, arsenite transport to the xylem and accumulation in shoots and grain decreased greatly
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	silicon	An efflux transporter of silicon in rice	Here we describe a previously uncharacterized gene, low silicon rice 2 (Lsi2), which has no similarity to Lsi1
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	silicon	An efflux transporter of silicon in rice	Expression of Lsi2 in Xenopus oocytes did not result in influx transport activity for silicon, but preloading of the oocytes with silicon resulted in a release of silicon, indicating that Lsi2 is a silicon efflux transporter
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	seedlings	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	There was a negative correlation between the expression level of OsLsi1 and OsLsi2 and shoot Si accumulation when the rice seedlings were exposed to different Si supply conditions
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	root	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	A split root experiment showed that the expression of both OsLsi1 and OsLsi2 was also down-regulated in half the roots without direct Si exposure when the other half of the roots were exposed to Si
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	shoot	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	There was a negative correlation between the expression level of OsLsi1 and OsLsi2 and shoot Si accumulation when the rice seedlings were exposed to different Si supply conditions
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	transporter	Altered root structure affects both expression and cellular localization of transporters for mineral element uptake in rice.	 The expression level of some transporter genes including OsLsi1 and OsLsi2 for Si uptake and OsNramp5 for Mn uptake was significantly decreased in the mutant compared with the wild-type rice
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	root	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	root	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	 In summary, our results reveal that Si deposition at root endodermis and its resultant reduction of Na+ bypass flow is modulated by OsLsi1 and OsLsi2 and regulated by the expression of OsLsi1 and OsLsi2, implying that root Si deposition could be an active and physiologically-regulated process in rice
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	salt	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	 In this study, we investigated the roles of OsLsi1 and OsLsi2 in Si-induced reduction of bypass flow and its resultant alleviation of salt stress by using lsi1 and lsi2 mutants (defective in OsLsi1 and OsLsi2, respectively) and their wild types (WTs)
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	salt stress	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	 In this study, we investigated the roles of OsLsi1 and OsLsi2 in Si-induced reduction of bypass flow and its resultant alleviation of salt stress by using lsi1 and lsi2 mutants (defective in OsLsi1 and OsLsi2, respectively) and their wild types (WTs)
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	stress	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	 In this study, we investigated the roles of OsLsi1 and OsLsi2 in Si-induced reduction of bypass flow and its resultant alleviation of salt stress by using lsi1 and lsi2 mutants (defective in OsLsi1 and OsLsi2, respectively) and their wild types (WTs)
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	silicon	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	R protein	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 The polar localization of both OsLsi1 and OsLsi2 was not altered by Si supply, but their protein abundance was reduced
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	R protein	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 The polar localization of OsLsi1 and OsLsi2 was not altered by inhibition of clathrin-mediated endocytosis (CME) by dominant-negative induction of dynamin-related protein1A and knockout of mu subunit of adaptor protein 2 complex, although the knockout mutants of OsAP2M gene showed dwarf phenotype
Lsi2|OsLsi2	Os03g0107300	LOC_Os03g01700	dwarf	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	 The polar localization of OsLsi1 and OsLsi2 was not altered by inhibition of clathrin-mediated endocytosis (CME) by dominant-negative induction of dynamin-related protein1A and knockout of mu subunit of adaptor protein 2 complex, although the knockout mutants of OsAP2M gene showed dwarf phenotype
Lsi3	Os10g0547500	LOC_Os10g39980	leaf	Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.	Similar to Lsi6, knockout of Lsi2 and Lsi3 also resulted in decreased distribution of Si to the panicles but increased Si to the flag leaf
Lsi3	Os10g0547500	LOC_Os10g39980	vascular bundle	Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.	Lsi3 was located in the parenchyma tissues between enlarged vascular bundles and diffuse vascular bundles
Lsi3	Os10g0547500	LOC_Os10g39980	silicon	Orchestration of three transporters and distinct vascular structures in node for  intervascular transfer of silicon in rice	Orchestration of three transporters and distinct vascular structures in node for  intervascular transfer of silicon in rice
Lsi3	Os10g0547500	LOC_Os10g39980	silicon transporter	Orchestration of three transporters and distinct vascular structures in node for  intervascular transfer of silicon in rice	Orchestration of three transporters and distinct vascular structures in node for  intervascular transfer of silicon in rice
Lsi6	Os06g0228200	LOC_Os06g12310	root	A transporter regulating silicon distribution in rice shoots	Lsi6 is expressed in the leaf sheath and leaf blades as well as in the root tips
Lsi6	Os06g0228200	LOC_Os06g12310	root	A transporter regulating silicon distribution in rice shoots	Knockdown of Lsi6 did not affect the uptake of Si by the roots but resulted in disordered deposition of silica in the shoots and increased excretion of Si in the guttation fluid
Lsi6	Os06g0228200	LOC_Os06g12310	panicle	A transporter at the node responsible for intervascular transfer of silicon in rice	Lsi6 is a silicon transporter in rice (Oryza sativa), and its expression in node I below the panicles is greatly enhanced when the panicle is completely emerged
Lsi6	Os06g0228200	LOC_Os06g12310	panicle	A transporter at the node responsible for intervascular transfer of silicon in rice	Knockout of Lsi6 decreased Si accumulation in the panicles but increased Si accumulation in the flag leaf
Lsi6	Os06g0228200	LOC_Os06g12310	vascular bundle	A transporter at the node responsible for intervascular transfer of silicon in rice	Lsi6 is mainly localized at the xylem transfer cells located at the outer boundary region of the enlarged large vascular bundles in node I
Lsi6	Os06g0228200	LOC_Os06g12310	transporter	A transporter at the node responsible for intervascular transfer of silicon in rice	Herein, we report on a transporter (Lsi6) responsible for the redirection of a plant nutrient at the node
Lsi6	Os06g0228200	LOC_Os06g12310	transporter	A transporter at the node responsible for intervascular transfer of silicon in rice	Lsi6 is a silicon transporter in rice (Oryza sativa), and its expression in node I below the panicles is greatly enhanced when the panicle is completely emerged
Lsi6	Os06g0228200	LOC_Os06g12310	transporter	A transporter at the node responsible for intervascular transfer of silicon in rice	These results suggest that Lsi6 is a transporter involved in intervascular transfer (i
Lsi6	Os06g0228200	LOC_Os06g12310	leaf	A transporter regulating silicon distribution in rice shoots	Lsi6 is expressed in the leaf sheath and leaf blades as well as in the root tips
Lsi6	Os06g0228200	LOC_Os06g12310	leaf	A transporter regulating silicon distribution in rice shoots	Cellular localization studies revealed that Lsi6 is found in the xylem parenchyma cells of the leaf sheath and leaf blades
Lsi6	Os06g0228200	LOC_Os06g12310	leaf	A transporter regulating silicon distribution in rice shoots	These results indicate that Lsi6 is a transporter responsible for the transport of Si out of the xylem and subsequently affects the distribution of Si in the leaf
Lsi6	Os06g0228200	LOC_Os06g12310	transporter	A transporter regulating silicon distribution in rice shoots	Here, we describe a transporter, Lsi6, which is involved in the distribution of Si in the shoots
Lsi6	Os06g0228200	LOC_Os06g12310	transporter	A transporter regulating silicon distribution in rice shoots	These results indicate that Lsi6 is a transporter responsible for the transport of Si out of the xylem and subsequently affects the distribution of Si in the leaf
Lsi6	Os06g0228200	LOC_Os06g12310	silicon	A transporter at the node responsible for intervascular transfer of silicon in rice	Lsi6 is a silicon transporter in rice (Oryza sativa), and its expression in node I below the panicles is greatly enhanced when the panicle is completely emerged
Lsi6	Os06g0228200	LOC_Os06g12310	leaf	A transporter at the node responsible for intervascular transfer of silicon in rice	Knockout of Lsi6 decreased Si accumulation in the panicles but increased Si accumulation in the flag leaf
Lsi6	Os06g0228200	LOC_Os06g12310	sheath	A transporter regulating silicon distribution in rice shoots	Lsi6 is expressed in the leaf sheath and leaf blades as well as in the root tips
Lsi6	Os06g0228200	LOC_Os06g12310	sheath	A transporter regulating silicon distribution in rice shoots	Cellular localization studies revealed that Lsi6 is found in the xylem parenchyma cells of the leaf sheath and leaf blades
Lsi6	Os06g0228200	LOC_Os06g12310	shoot	A transporter regulating silicon distribution in rice shoots	Here, we describe a transporter, Lsi6, which is involved in the distribution of Si in the shoots
Lsi6	Os06g0228200	LOC_Os06g12310	shoot	A transporter regulating silicon distribution in rice shoots	Knockdown of Lsi6 did not affect the uptake of Si by the roots but resulted in disordered deposition of silica in the shoots and increased excretion of Si in the guttation fluid
Lsi6	Os06g0228200	LOC_Os06g12310	xylem	A transporter at the node responsible for intervascular transfer of silicon in rice	Lsi6 is mainly localized at the xylem transfer cells located at the outer boundary region of the enlarged large vascular bundles in node I
Lsi6	Os06g0228200	LOC_Os06g12310	xylem	A transporter regulating silicon distribution in rice shoots	Cellular localization studies revealed that Lsi6 is found in the xylem parenchyma cells of the leaf sheath and leaf blades
Lsi6	Os06g0228200	LOC_Os06g12310	xylem	A transporter regulating silicon distribution in rice shoots	These results indicate that Lsi6 is a transporter responsible for the transport of Si out of the xylem and subsequently affects the distribution of Si in the leaf
LSSR1	Os02g0596200	LOC_Os02g38260	pollen	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	LSSR1 is predominantly expressed in anthers during the microsporogenesis stage, and its encoded protein contains a signal peptide at the N-terminal, which may be a secretory protein that stores in pollen grains and functions during rice fertilization
LSSR1	Os02g0596200	LOC_Os02g38260	pollen	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	In addition, lssr1 pollen grains could be normally stained by I2-KI solution
LSSR1	Os02g0596200	LOC_Os02g38260	pollen	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	Cytological results demonstrate that the blockage of fertilization mostly accounted for the low seed setting rate in lssr1 mutant lines, which was most likely caused by abnormal pollen grain germination, failed pollen tube penetration, and retarded pollen tube elongation
LSSR1	Os02g0596200	LOC_Os02g38260	grain	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	Cytological results demonstrate that the blockage of fertilization mostly accounted for the low seed setting rate in lssr1 mutant lines, which was most likely caused by abnormal pollen grain germination, failed pollen tube penetration, and retarded pollen tube elongation
LSSR1	Os02g0596200	LOC_Os02g38260	seed	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	LSSR1 facilitates seed setting rate by promoting fertilization in rice.
LSSR1	Os02g0596200	LOC_Os02g38260	seed	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	To explore the physiological function of LSSR1 in rice, loss-of-function mutants of LSSR1 were created through the CRISPR-Cas9 system, which showed a significant decrease in rice seed setting rate
LSSR1	Os02g0596200	LOC_Os02g38260	seed	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	Cytological results demonstrate that the blockage of fertilization mostly accounted for the low seed setting rate in lssr1 mutant lines, which was most likely caused by abnormal pollen grain germination, failed pollen tube penetration, and retarded pollen tube elongation
LSSR1	Os02g0596200	LOC_Os02g38260	seed	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	Together, our results suggest that LSSR1 plays an important role in rice fertilization, which in turn is vital for maintaining rice seed setting rate
LSSR1	Os02g0596200	LOC_Os02g38260	vegetative	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	However, the morphology of the vegetative and reproductive organs appears normal in lssr1 mutant lines
LSSR1	Os02g0596200	LOC_Os02g38260	reproductive	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	However, the morphology of the vegetative and reproductive organs appears normal in lssr1 mutant lines
LTG5	Os05g0527100	LOC_Os05g45110	temperature	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	We also explored the cold tolerance gene LTG5 (Low Temperature Growth 5) encoding a UDP-glucosyltransferase
LTG5	Os05g0527100	LOC_Os05g45110	growth	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	We also explored the cold tolerance gene LTG5 (Low Temperature Growth 5) encoding a UDP-glucosyltransferase
LTG5	Os05g0527100	LOC_Os05g45110	tolerance	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	We also explored the cold tolerance gene LTG5 (Low Temperature Growth 5) encoding a UDP-glucosyltransferase
LTG5	Os05g0527100	LOC_Os05g45110	tolerance	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	The overexpression of the LTG5 gene conferred cold tolerance to indica rice
LTG5	Os05g0527100	LOC_Os05g45110	cold tolerance	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	We also explored the cold tolerance gene LTG5 (Low Temperature Growth 5) encoding a UDP-glucosyltransferase
LTG5	Os05g0527100	LOC_Os05g45110	cold tolerance	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	The overexpression of the LTG5 gene conferred cold tolerance to indica rice
LTG5	Os05g0527100	LOC_Os05g45110	cold stress	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice
LTG5	Os05g0527100	LOC_Os05g45110	stress	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice
LTG5	Os05g0527100	LOC_Os05g45110	cold	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice
LTG5	Os05g0527100	LOC_Os05g45110	cold	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	We also explored the cold tolerance gene LTG5 (Low Temperature Growth 5) encoding a UDP-glucosyltransferase
LTG5	Os05g0527100	LOC_Os05g45110	cold	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice	The overexpression of the LTG5 gene conferred cold tolerance to indica rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	root	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	The cells in the elongation zone of ospho2 seedling roots were much shorter than those of the wild type
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	growth	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	The ospho2 mutants exhibited defects in growth and reproductive development in the whole growing period
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	root	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Here we report that OsPHR2 positively regulates the low-affinity Pi transporter gene OsPT2 by physical interaction and upstream regulation of OsPHO2 in roots
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	root	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Our data also show that OsSPX1 is a negative regulator of OsPHR2 and is involved in the feedback of Pi-signaling network in roots that is defined by OsPHR2 and OsPHO2
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	reproductive	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	The ospho2 mutants exhibited defects in growth and reproductive development in the whole growing period
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	transporter	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	In association with enhanced Pi uptake and transport, some Pi transporters were up-regulated in the ltn1 mutant in the presence of sufficient Pi
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	transporter	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Here we report that OsPHR2 positively regulates the low-affinity Pi transporter gene OsPT2 by physical interaction and upstream regulation of OsPHO2 in roots
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	transporter	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	This study thus provides evidence that OsPHO2, which functions at the downstream of OsPHF1, modulates Pi utilization by regulating the expression of Pht1 transporters in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	root	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Furthermore, the elongation of primary and adventitious roots was enhanced in the ltn1 mutant under Pi starvation, suggesting that LTN1 is involved in Pi-dependent root architecture alteration
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	seedling	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	The cells in the elongation zone of ospho2 seedling roots were much shorter than those of the wild type
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	shoot	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	These results suggest that ospho2 mutant phenotype results from a partial defect in Pi translocation and remobilization in the shoot of rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	root	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	architecture	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Furthermore, the elongation of primary and adventitious roots was enhanced in the ltn1 mutant under Pi starvation, suggesting that LTN1 is involved in Pi-dependent root architecture alteration
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	shoot	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	The ltn1 mutant exhibited increased Pi uptake and translocation, which led to Pi overaccumulation in shoots
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	transporter	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	adventitious root	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Furthermore, the elongation of primary and adventitious roots was enhanced in the ltn1 mutant under Pi starvation, suggesting that LTN1 is involved in Pi-dependent root architecture alteration
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	Furthermore, OsPT1 expression was strongly enhanced by the mutation of Phosphate Overaccumulator2 (OsPHO2) but not by Phosphate Starvation Response2, indicating that OsPT1 is involved in the OsPHO2-regulated Pi pathway
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	leaf	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	Furthermore, Pi levels in the ospho2 mutants were highest in the oldest leaf and lowest in the youngest leaf, whereas there was no significant difference in the corresponding leaves of wild-type plants
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the regulation on expression of OsPT2 by OsPHR2 and the accumulation of excess shoot Pi, but it does not suppress induction of OsPT2 or the accumulation of excessive shoot Pi in the Ospho2 mutant
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	phosphorus	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	The phosphorus concentration in the blades of ospho2 mutants was 5
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Map-based cloning identified LTN1 as LOC_Os05g48390, the putative ortholog of Arabidopsis PHO2, which plays important roles in Pi starvation signaling
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	The ltn1 mutant exhibited increased Pi uptake and translocation, which led to Pi overaccumulation in shoots
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	In association with enhanced Pi uptake and transport, some Pi transporters were up-regulated in the ltn1 mutant in the presence of sufficient Pi
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Furthermore, the elongation of primary and adventitious roots was enhanced in the ltn1 mutant under Pi starvation, suggesting that LTN1 is involved in Pi-dependent root architecture alteration
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Under Pi-sufficient conditions, typical Pi starvation responses such as stimulation of phosphatase and RNase activities, lipid composition alteration, nitrogen assimilation repression, and increased metal uptake were also activated in ltn1
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Our results strongly indicate that LTN1 is a crucial Pi starvation signaling component downstream of miR399 involved in the regulation of multiple Pi starvation responses in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	phosphate	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	Furthermore, OsPT1 expression was strongly enhanced by the mutation of Phosphate Overaccumulator2 (OsPHO2) but not by Phosphate Starvation Response2, indicating that OsPT1 is involved in the OsPHO2-regulated Pi pathway
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Here we report that OsPHR2 positively regulates the low-affinity Pi transporter gene OsPT2 by physical interaction and upstream regulation of OsPHO2 in roots
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the regulation on expression of OsPT2 by OsPHR2 and the accumulation of excess shoot Pi, but it does not suppress induction of OsPT2 or the accumulation of excessive shoot Pi in the Ospho2 mutant
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	leaf	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	In this work, a rice leaf tip necrosis1 (ltn1) mutant was identified and characterized
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	root architecture	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Furthermore, the elongation of primary and adventitious roots was enhanced in the ltn1 mutant under Pi starvation, suggesting that LTN1 is involved in Pi-dependent root architecture alteration
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	Furthermore, Pi levels in the ospho2 mutants were highest in the oldest leaf and lowest in the youngest leaf, whereas there was no significant difference in the corresponding leaves of wild-type plants
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	These results suggest that ospho2 mutant phenotype results from a partial defect in Pi translocation and remobilization in the shoot of rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	This study thus provides evidence that OsPHO2, which functions at the downstream of OsPHF1, modulates Pi utilization by regulating the expression of Pht1 transporters in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	phosphate	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	Previous research using forward genetics approaches demonstrated that OsPHO2 regulates multiple phosphate-starvation responses in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	phosphate	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice	In this work, we finely characterized two independent OsPHO2 knockout rice mutants under inorganic phosphate (Pi)-sufficient conditions
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	nitrogen	LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Under Pi-sufficient conditions, typical Pi starvation responses such as stimulation of phosphatase and RNase activities, lipid composition alteration, nitrogen assimilation repression, and increased metal uptake were also activated in ltn1
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	leaf	Molecular interaction between PHO2 and GI in rice.	 Reduced growth, leaf tip necrosis, delayed flowering and over-accumulation of Pi in leaves compared to wild-type were shared features of Osgi and Ospho2 plants
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	development	Molecular interaction between PHO2 and GI in rice.	 The interaction between OsPHO2 and OsGI links high-level regulators of Pi homeostasis and development in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	homeostasis	Molecular interaction between PHO2 and GI in rice.	 The interaction between OsPHO2 and OsGI links high-level regulators of Pi homeostasis and development in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	flowering time	Molecular interaction between PHO2 and GI in rice.	 A yeast-two-hybrid screen using Oryza sativa (rice) PHO2 as bait, revealed an interaction between OsPHO2 and OsGIGANTEA, a key regulator of flowering time, which was confirmed using bimolecular flourescenec complementation (BiFC)
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	Pi	Molecular interaction between PHO2 and GI in rice.	 Reduced growth, leaf tip necrosis, delayed flowering and over-accumulation of Pi in leaves compared to wild-type were shared features of Osgi and Ospho2 plants
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	Pi	Molecular interaction between PHO2 and GI in rice.	 Pi analysis of individual leaves demonstrated that Osgi, similar to Ospho2 mutants, were impaired in Pi remobilization from old to young leaves, albeit to a lesser extent
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	Pi	Molecular interaction between PHO2 and GI in rice.	 The interaction between OsPHO2 and OsGI links high-level regulators of Pi homeostasis and development in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Molecular interaction between PHO2 and GI in rice.	 Reduced growth, leaf tip necrosis, delayed flowering and over-accumulation of Pi in leaves compared to wild-type were shared features of Osgi and Ospho2 plants
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Molecular interaction between PHO2 and GI in rice.	 Pi analysis of individual leaves demonstrated that Osgi, similar to Ospho2 mutants, were impaired in Pi remobilization from old to young leaves, albeit to a lesser extent
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Molecular interaction between PHO2 and GI in rice.	 The interaction between OsPHO2 and OsGI links high-level regulators of Pi homeostasis and development in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	Pi homeostasis	Molecular interaction between PHO2 and GI in rice.	 The interaction between OsPHO2 and OsGI links high-level regulators of Pi homeostasis and development in rice
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	Pi	Phosphate-Starvation-Inducible S-Like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay	 Finally, the dynamic transcriptional regulation of OsRNS genes by overexpression of OsPHR2, ospho2 mutant, and overexpression of OsPT1 lines involved in Pi signaling pathway suggests the molecular basis of OsRNS family in Pi recycling via RNA decay under Pi starvation
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Phosphate-Starvation-Inducible S-Like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay	 Finally, the dynamic transcriptional regulation of OsRNS genes by overexpression of OsPHR2, ospho2 mutant, and overexpression of OsPT1 lines involved in Pi signaling pathway suggests the molecular basis of OsRNS family in Pi recycling via RNA decay under Pi starvation
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	Pi signaling	Phosphate-Starvation-Inducible S-Like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay	 Finally, the dynamic transcriptional regulation of OsRNS genes by overexpression of OsPHR2, ospho2 mutant, and overexpression of OsPT1 lines involved in Pi signaling pathway suggests the molecular basis of OsRNS family in Pi recycling via RNA decay under Pi starvation
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	xylem	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	 The sap experiment clearly showed the significant increases in levels of Phe in the xylem sap of ospho2 than the WT grown hydroponically with Phe and +Pi
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	seed	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	 However, the concentrations of Phe in the seeds were comparable in the WT and mutants, suggesting a pivotal of OsPHO2 in attenuating Phe toxicity in the seed
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	phosphate	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	Pi	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	 In the present study, the role of OsPHO2 in regulating the translocation and accumulation of phenanthrene (Phe) and the involvement of Pi in this process were investigated
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	Pi	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	 In +Phe WT, the relative expression level of OsPHO2 in the shoots was significantly lower, while those of Pi transporters (PTs) OsPT4 and OsPT8 were significantly higher in the roots compared with -Phe
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	pi	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	 In the present study, the role of OsPHO2 in regulating the translocation and accumulation of phenanthrene (Phe) and the involvement of Pi in this process were investigated
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	pi	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	 In +Phe WT, the relative expression level of OsPHO2 in the shoots was significantly lower, while those of Pi transporters (PTs) OsPT4 and OsPT8 were significantly higher in the roots compared with -Phe
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	 In the present study, the role of OsPHO2 in regulating the translocation and accumulation of phenanthrene (Phe) and the involvement of Pi in this process were investigated
LTN1|OsPHO2|OsRLS1	Os05g0557700	LOC_Os05g48390	 pi 	Distribution of phenanthrene in the ospho2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	 In +Phe WT, the relative expression level of OsPHO2 in the shoots was significantly lower, while those of Pi transporters (PTs) OsPT4 and OsPT8 were significantly higher in the roots compared with -Phe
Ltp1	Os03g0103100	LOC_Os03g01300	disease	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene	The Ltp1 transcripts were found to strongly accumulate in response to inoculation with the fungal agent of the blast disease, Magnaporthe grisea, in two rice cultivars exhibiting compatible or incompatible host-pathogen interactions
Ltp1	Os03g0103100	LOC_Os03g01300	stomata	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene	Analysis of pdelta1176Gus leaf samples inoculated with the blast fungus demonstrated that the Ltp1 promoter is induced in all cell types of tissues surrounding the lesion and notably in stomata guard cells
Ltp1	Os03g0103100	LOC_Os03g01300	vegetative	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene	Histochemical and fluorometric GUS assays and in situ detection of uidA transcripts in transgenic homozygous lines harbouring the pdelta1176Gus construct demonstrated that the Ltp1 promoter is preferentially active in aerial vegetative and reproductive organs and that both specificity and level of expression are regulated during organ development
Ltp1	Os03g0103100	LOC_Os03g01300	reproductive	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene	Histochemical and fluorometric GUS assays and in situ detection of uidA transcripts in transgenic homozygous lines harbouring the pdelta1176Gus construct demonstrated that the Ltp1 promoter is preferentially active in aerial vegetative and reproductive organs and that both specificity and level of expression are regulated during organ development
Ltp1	Os03g0103100	LOC_Os03g01300	blast disease	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene	The Ltp1 transcripts were found to strongly accumulate in response to inoculation with the fungal agent of the blast disease, Magnaporthe grisea, in two rice cultivars exhibiting compatible or incompatible host-pathogen interactions
Ltp1	Os03g0103100	LOC_Os03g01300	blast	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene	The Ltp1 transcripts were found to strongly accumulate in response to inoculation with the fungal agent of the blast disease, Magnaporthe grisea, in two rice cultivars exhibiting compatible or incompatible host-pathogen interactions
Ltp1	Os03g0103100	LOC_Os03g01300	blast	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene	Analysis of pdelta1176Gus leaf samples inoculated with the blast fungus demonstrated that the Ltp1 promoter is induced in all cell types of tissues surrounding the lesion and notably in stomata guard cells
Ltp1	Os03g0103100	LOC_Os03g01300	leaf	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene	Analysis of pdelta1176Gus leaf samples inoculated with the blast fungus demonstrated that the Ltp1 promoter is induced in all cell types of tissues surrounding the lesion and notably in stomata guard cells
LTP2|nsLTP2	Os03g0111300	LOC_Os03g02050	seed	Characterization of a gene encoding an abscisic acid-inducible type-2 lipid transfer protein from rice	Ltp2 mRNA is accumulated only in mature seeds
LTP2|nsLTP2	Os03g0111300	LOC_Os03g02050	defense	Solution structure of plant nonspecific lipid transfer protein-2 from rice (Oryza sativa)	The positively charged residues on the molecular surface of nsLTP2 are structurally similar to other plant defense proteins
LTT1	Os10g0482200	LOC_Os10g34110	temperature	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.	Hence, the ltt1 mutation can significantly improve the seed setting ability of cold-sensitive rice varieties under low-temperature stress conditions, with little yield penalty under optimal temperature conditions
LTT1	Os10g0482200	LOC_Os10g34110	development	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.	Cold-induced ROS accumulation is therefore prevented in the anthers of the ltt1 mutants allowing correct development
LTT1	Os10g0482200	LOC_Os10g34110	seed	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.	Hence, the ltt1 mutation can significantly improve the seed setting ability of cold-sensitive rice varieties under low-temperature stress conditions, with little yield penalty under optimal temperature conditions
LTT1	Os10g0482200	LOC_Os10g34110	tolerance	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.
LTT1	Os10g0482200	LOC_Os10g34110	yield	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.	Hence, the ltt1 mutation can significantly improve the seed setting ability of cold-sensitive rice varieties under low-temperature stress conditions, with little yield penalty under optimal temperature conditions
LTT1	Os10g0482200	LOC_Os10g34110	cold tolerance	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.
LTT1	Os10g0482200	LOC_Os10g34110	stress	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.	Hence, the ltt1 mutation can significantly improve the seed setting ability of cold-sensitive rice varieties under low-temperature stress conditions, with little yield penalty under optimal temperature conditions
LTT1	Os10g0482200	LOC_Os10g34110	cold	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.	A point mutation in LTT1 enhances cold tolerance at the booting stage in rice.
LYL1|OsChlP|OsGGR	Os02g0744900	LOC_Os02g51080	leaf	Mutation of the light-induced yellow leaf 1 gene, which encodes a geranylgeranyl reductase, affects chlorophyll biosynthesis and light sensitivity in rice	In this study, we characterized a rice light-induced yellow leaf 1-1 (lyl1-1) mutant that is hypersensitive to high-light and defective in the Chl synthesis
LYL1|OsChlP|OsGGR	Os02g0744900	LOC_Os02g51080	oxidative	Mutation of the light-induced yellow leaf 1 gene, which encodes a geranylgeranyl reductase, affects chlorophyll biosynthesis and light sensitivity in rice	Additionally, the lyl1-1 mutant suffered from severe photooxidative damage and displayed a drastic reduction in the levels of alpha-tocopherol and photosynthetic proteins
LYP4|OsLYP4	Os09g0452200	LOC_Os09g27890	magnaporthe oryzae	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction	Here we further demonstrated the important roles of OsLYP4 and OsLYP6 in rice defense signaling, as silencing of either LYP impaired the defense marker gene activation induced by either bacterial pathogen Xanthomonas oryzaecola or fungal pathogen Magnaporthe oryzae
LYP4|OsLYP4	Os09g0452200	LOC_Os09g27890	defense	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction	Here we further demonstrated the important roles of OsLYP4 and OsLYP6 in rice defense signaling, as silencing of either LYP impaired the defense marker gene activation induced by either bacterial pathogen Xanthomonas oryzaecola or fungal pathogen Magnaporthe oryzae
LYP4|OsLYP4	Os09g0452200	LOC_Os09g27890	defense	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction
LYP6|OsLYP6|ORF2	Os06g0208800	LOC_Os06g10660	magnaporthe oryzae	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction	Here we further demonstrated the important roles of OsLYP4 and OsLYP6 in rice defense signaling, as silencing of either LYP impaired the defense marker gene activation induced by either bacterial pathogen Xanthomonas oryzaecola or fungal pathogen Magnaporthe oryzae
LYP6|OsLYP6|ORF2	Os06g0208800	LOC_Os06g10660	defense	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction	Here we further demonstrated the important roles of OsLYP4 and OsLYP6 in rice defense signaling, as silencing of either LYP impaired the defense marker gene activation induced by either bacterial pathogen Xanthomonas oryzaecola or fungal pathogen Magnaporthe oryzae
LYP6|OsLYP6|ORF2	Os06g0208800	LOC_Os06g10660	defense	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction
MADS78	Os09g0116800	LOC_Os09g02830	auxin	MADS78 and MADS79 are essential regulators of early seed development in rice.	Mis-regulation of MADS78 and 79 perturbed auxin homeostasis and carbon metabolism, as evident by mis-regulation of genes involved in auxin transport and signaling as well as starch biosynthesis genes causing structural abnormalities in starch granules at maturity
MADS78	Os09g0116800	LOC_Os09g02830	development	MADS78 and MADS79 are essential regulators of early seed development in rice.	MADS78 and MADS79 are essential regulators of early seed development in rice.
MADS78	Os09g0116800	LOC_Os09g02830	seed	MADS78 and MADS79 are essential regulators of early seed development in rice.	MADS78 and MADS79 are essential regulators of early seed development in rice.
MADS78	Os09g0116800	LOC_Os09g02830	seed	MADS78 and MADS79 are essential regulators of early seed development in rice.	MADS78 and 79 were indispensable for seed development, as a double knock-out mutant failed to make viable seeds
MADS78	Os09g0116800	LOC_Os09g02830	seed	MADS78 and MADS79 are essential regulators of early seed development in rice.	Collectively, we show MADS78 and 79 are essential regulators of early seed developmental transition and impact both seed size and quality in rice
MADS78	Os09g0116800	LOC_Os09g02830	starch	MADS78 and MADS79 are essential regulators of early seed development in rice.	Mis-regulation of MADS78 and 79 perturbed auxin homeostasis and carbon metabolism, as evident by mis-regulation of genes involved in auxin transport and signaling as well as starch biosynthesis genes causing structural abnormalities in starch granules at maturity
MADS78	Os09g0116800	LOC_Os09g02830	homeostasis	MADS78 and MADS79 are essential regulators of early seed development in rice.	Mis-regulation of MADS78 and 79 perturbed auxin homeostasis and carbon metabolism, as evident by mis-regulation of genes involved in auxin transport and signaling as well as starch biosynthesis genes causing structural abnormalities in starch granules at maturity
MADS78	Os09g0116800	LOC_Os09g02830	endosperm	MADS78 and MADS79 are essential regulators of early seed development in rice.	Seeds overexpressing (OE) MADS78 and 79 exhibited delayed endosperm cellularization, while CRISPR-Cas9 mediated single knock-out mutants showed precocious endosperm cellularization
MADS78	Os09g0116800	LOC_Os09g02830	auxin transport	MADS78 and MADS79 are essential regulators of early seed development in rice.	Mis-regulation of MADS78 and 79 perturbed auxin homeostasis and carbon metabolism, as evident by mis-regulation of genes involved in auxin transport and signaling as well as starch biosynthesis genes causing structural abnormalities in starch granules at maturity
MADS78	Os09g0116800	LOC_Os09g02830	seed size	MADS78 and MADS79 are essential regulators of early seed development in rice.	Collectively, we show MADS78 and 79 are essential regulators of early seed developmental transition and impact both seed size and quality in rice
MADS78	Os09g0116800	LOC_Os09g02830	seed development	MADS78 and MADS79 are essential regulators of early seed development in rice.	MADS78 and MADS79 are essential regulators of early seed development in rice.
MADS78	Os09g0116800	LOC_Os09g02830	seed development	MADS78 and MADS79 are essential regulators of early seed development in rice.	MADS78 and 79 were indispensable for seed development, as a double knock-out mutant failed to make viable seeds
MADS78	Os09g0116800	LOC_Os09g02830	seed development	MADS78 and MADS79 are essential regulators of early seed development in rice.	Collectively, we show MADS78 and 79 are essential regulators of early seed developmental transition and impact both seed size and quality in rice
MADS78	Os09g0116800	LOC_Os09g02830	quality	MADS78 and MADS79 are essential regulators of early seed development in rice.	Collectively, we show MADS78 and 79 are essential regulators of early seed developmental transition and impact both seed size and quality in rice
MADS78	Os09g0116800	LOC_Os09g02830	starch biosynthesis	MADS78 and MADS79 are essential regulators of early seed development in rice.	Mis-regulation of MADS78 and 79 perturbed auxin homeostasis and carbon metabolism, as evident by mis-regulation of genes involved in auxin transport and signaling as well as starch biosynthesis genes causing structural abnormalities in starch granules at maturity
MADS79	Os01g0975800	LOC_Os01g74440	development	MADS78 and MADS79 are essential regulators of early seed development in rice.	MADS78 and MADS79 are essential regulators of early seed development in rice.
MADS79	Os01g0975800	LOC_Os01g74440	seed	MADS78 and MADS79 are essential regulators of early seed development in rice.	MADS78 and MADS79 are essential regulators of early seed development in rice.
MADS79	Os01g0975800	LOC_Os01g74440	seed development	MADS78 and MADS79 are essential regulators of early seed development in rice.	MADS78 and MADS79 are essential regulators of early seed development in rice.
MAIF1	Os02g0671100	LOC_Os02g44990	ABA	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	Overexpression of MAIF1 reduces rice ABA sensitivity and abiotic stress tolerance and promotes rice root growth
MAIF1	Os02g0671100	LOC_Os02g44990	root	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	MAIF1 expression is also induced in root tips by sucrose, independent of its hydrolytic hexose products, glucose and fructose, and the plant hormones auxin and cytokinin
MAIF1	Os02g0671100	LOC_Os02g44990	root	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	Overexpression of MAIF1 reduces rice ABA sensitivity and abiotic stress tolerance and promotes rice root growth
MAIF1	Os02g0671100	LOC_Os02g44990	root	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	These results suggest that MAIF1 is involved in multiple signaling pathways in regulating root growth
MAIF1	Os02g0671100	LOC_Os02g44990	root	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	Our results also suggest that MAIF1 plays the negative role in response to abiotic stress possibly by regulating root growth
MAIF1	Os02g0671100	LOC_Os02g44990	auxin	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	MAIF1 expression is also induced in root tips by sucrose, independent of its hydrolytic hexose products, glucose and fructose, and the plant hormones auxin and cytokinin
MAIF1	Os02g0671100	LOC_Os02g44990	growth	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	Overexpression of MAIF1 reduces rice ABA sensitivity and abiotic stress tolerance and promotes rice root growth
MAIF1	Os02g0671100	LOC_Os02g44990	growth	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	These results suggest that MAIF1 is involved in multiple signaling pathways in regulating root growth
MAIF1	Os02g0671100	LOC_Os02g44990	growth	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	Our results also suggest that MAIF1 plays the negative role in response to abiotic stress possibly by regulating root growth
MAIF1	Os02g0671100	LOC_Os02g44990	abiotic stress	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	MAIF1 expression is induced rapidly and strongly by abscisic acid (ABA) and abiotic stresses
MAIF1	Os02g0671100	LOC_Os02g44990	abiotic stress	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	Overexpression of MAIF1 reduces rice ABA sensitivity and abiotic stress tolerance and promotes rice root growth
MAIF1	Os02g0671100	LOC_Os02g44990	abiotic stress	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	Our results also suggest that MAIF1 plays the negative role in response to abiotic stress possibly by regulating root growth
MAIF1	Os02g0671100	LOC_Os02g44990	cytokinin	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice	MAIF1 expression is also induced in root tips by sucrose, independent of its hydrolytic hexose products, glucose and fructose, and the plant hormones auxin and cytokinin
MAP65-5	Os05g0409400	LOC_Os05g33890	cell division	Rice kinesin-related protein STD1 and microtubule-associated protein MAP65-5 cooperatively control microtubule bundling.	STD1 specifically interacts with MAP65-5 in rice and they cooperatively control microtubule bundles in phragmoplast expansion during cell division
MAS|OsMAS	Os04g0179200	LOC_Os04g10010	oxidation step	OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice	For momilactone biosynthesis, two cytochrome P450 monooxygenase (P450) genes (CYP99A2 and CYP99A3) and a dehydrogenase gene (OsMAS) are also involved in the downstream oxidation steps of the diterpene hydrocarbons.
MEG1|OsIKU2	Os12g0632800	LOC_Os12g43640	protein kinase	Conserved Imprinted Genes between Intra-Subspecies and Inter-Subspecies Are Involved in Energy Metabolism and Seed Development in Rice 	MEG1 (Os12g0632800) encodes a receptor-like protein kinase. 
MEG2	Os10g0340600	LOC_Os10g19960	cell wall synthesis	Conserved Imprinted Genes between Intra-Subspecies and Inter-Subspecies Are Involved in Energy Metabolism and Seed Development in Rice	Finally, thousand-grain weight of mutants were reduced by 20% (Figure 5C). MEG2 (Os10g0340600) encodes a beta galactosidase (BGAL) involved in cell wall synthesis.
MEICA1	Os03g0144000	LOC_Os03g05040	meiotic	MEICA 1 (meiotic chromosome association 1) interacts with TOP3α and regulates meiotic recombination in rice.	Thus, our data establish two pivotal roles for MEICA1 in meiosis: preventing aberrant meiotic recombination and regulating crossover formation
MEICA1	Os03g0144000	LOC_Os03g05040	crossover	MEICA 1 (meiotic chromosome association 1) interacts with TOP3α and regulates meiotic recombination in rice.	In addition, MEICA1 has an anti-crossover activity revealed by suppressing the defects of crossover formation in msh5 meica1 compared with that in msh5, showing the similar function with its interacted protein TOP3α
MEICA1	Os03g0144000	LOC_Os03g05040	crossover	MEICA 1 (meiotic chromosome association 1) interacts with TOP3α and regulates meiotic recombination in rice.	Thus, our data establish two pivotal roles for MEICA1 in meiosis: preventing aberrant meiotic recombination and regulating crossover formation
MEICA1	Os03g0144000	LOC_Os03g05040	meiotic recombination	MEICA 1 (meiotic chromosome association 1) interacts with TOP3α and regulates meiotic recombination in rice.	Thus, our data establish two pivotal roles for MEICA1 in meiosis: preventing aberrant meiotic recombination and regulating crossover formation
MEL1	Os03g0800200	LOC_Os03g58600	sterile	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice	We identified the rice AGO gene MEIOSIS ARRESTED AT LEPTOTENE1 (MEL1) from the analysis of seed-sterile mutants
MEL1	Os03g0800200	LOC_Os03g58600	tapetum	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	These results, together with their mutant phenotypes, suggest that DTM1 plays important roles in the ER membrane during early tapetum development, functioning after MSP1 and before UDT1, and also in meiocyte development, after MEL1 and before PAIR1
MEL1	Os03g0800200	LOC_Os03g58600	anther	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice	In the mel1 mutant, chromosome condensation was arrested at early meiotic stages and irregularly sized, multinucleated, and vacuolated pollen mother cells (PMCs) frequently appeared in developing anthers
MEL1	Os03g0800200	LOC_Os03g58600	seed	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice	We identified the rice AGO gene MEIOSIS ARRESTED AT LEPTOTENE1 (MEL1) from the analysis of seed-sterile mutants
MEL1	Os03g0800200	LOC_Os03g58600	meiotic	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice	In the mel1 mutant, chromosome condensation was arrested at early meiotic stages and irregularly sized, multinucleated, and vacuolated pollen mother cells (PMCs) frequently appeared in developing anthers
MEL1	Os03g0800200	LOC_Os03g58600	meiotic	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice	These results indicate that the germ cell-specific rice MEL1 gene regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing, but not the initiation and establishment of germ cells themselves
MEL1	Os03g0800200	LOC_Os03g58600	cell division	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	However, expression of MSP1 and MEL1, which function in anther wall specification and germ cell division, respectively, was not altered in the dtm1 mutant
MEL1	Os03g0800200	LOC_Os03g58600	pollen	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice	In the mel1 mutant, chromosome condensation was arrested at early meiotic stages and irregularly sized, multinucleated, and vacuolated pollen mother cells (PMCs) frequently appeared in developing anthers
MEL1	Os03g0800200	LOC_Os03g58600	anther	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	However, expression of MSP1 and MEL1, which function in anther wall specification and germ cell division, respectively, was not altered in the dtm1 mutant
MEL1	Os03g0800200	LOC_Os03g58600	meiosis	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice	We identified the rice AGO gene MEIOSIS ARRESTED AT LEPTOTENE1 (MEL1) from the analysis of seed-sterile mutants
MEL1	Os03g0800200	LOC_Os03g58600	meiosis	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice	These results indicate that the germ cell-specific rice MEL1 gene regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing, but not the initiation and establishment of germ cells themselves
MEL1	Os03g0800200	LOC_Os03g58600	cell division	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice	These results indicate that the germ cell-specific rice MEL1 gene regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing, but not the initiation and establishment of germ cells themselves
MEL1	Os03g0800200	LOC_Os03g58600	meiosis	Histone H3 modifications are widely reprogrammed during male meiosis I in rice dependently on MEL1 Argonaute protein.	Histone H3 modifications are widely reprogrammed during male meiosis I in rice dependently on MEL1 Argonaute protein.
MEL1	Os03g0800200	LOC_Os03g58600	meiosis	Histone H3 modifications are widely reprogrammed during male meiosis I in rice dependently on MEL1 Argonaute protein.	LMR occurred dependently on a rice Argonaute protein, MEIOSIS ARRESTED AT LEPTOTENE1 (MEL1), which is specifically expressed in germ cells prior to meiosis, because LMR was depleted severely in mel1 mutant anthers
MEL1	Os03g0800200	LOC_Os03g58600	meiosis	Histone H3 modifications are widely reprogrammed during male meiosis I in rice dependently on MEL1 Argonaute protein.	These results suggest that MEL1 plays important roles in epigenetic LMR to promote faithful homologous recombination and synapsis in rice meiosis
MEL1	Os03g0800200	LOC_Os03g58600	meiotic	Histone H3 modifications are widely reprogrammed during male meiosis I in rice dependently on MEL1 Argonaute protein.	Interestingly, opposed to the LMR loss in most chromosomal regions, aberrant meiotic protein loading and hyper H3K9me2 accumulation emerged on the nucleolar organizing region in the mel1 PMCs
MEL2	Os12g0572800	LOC_Os12g38460	meiosis	A novel RNA-recognition-motif protein is required for premeiotic G1/S-phase transition in rice (Oryza sativa L.).	Expression analyses of several cell-cycle markers revealed that, in mel2 mutant anthers, most germ cells failed to enter premeiotic S-phase and meiosis, and a part escaped from the defect and underwent meiosis with a significant delay or continued mitotic cycles
MEL2	Os12g0572800	LOC_Os12g38460	meiosis	Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR.	Taken together with transcriptome and gene ontology results, we propose that the rice MEL2 is involved in the translational regulation of key meiotic genes on 3'-UTRs to achieve the faithful transition of germ cells to meiosis
MEL2	Os12g0572800	LOC_Os12g38460	meiotic	Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR.	Of 249 genes that conserved the consensus in their 3'-UTR, 13 genes spatiotemporally co-expressed with MEL2 in meiotic flowers, and included several genes whose function was supposed in meiosis; such as Replication protein A and OsMADS3
MEL2	Os12g0572800	LOC_Os12g38460	meiotic	Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR.	Taken together with transcriptome and gene ontology results, we propose that the rice MEL2 is involved in the translational regulation of key meiotic genes on 3'-UTRs to achieve the faithful transition of germ cells to meiosis
MER3|RCK	Os02g0617500	LOC_Os02g40450	sterile	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiosis	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	The Arabidopsis SDS (SOLO DANCERS) and RCK (ROCK-N-ROLLERS) genes are important for male meiosis, but it is still unknown whether they represent conserved functions in plants
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiosis	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice
MER3|RCK	Os02g0617500	LOC_Os02g40450	vegetative	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiotic	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	Finally, we found that the centromeric localization of OsSGO1 depends on OsAM1, not other meiotic proteins such as OsREC8, PAIR2, OsMER3, or ZEP1
MER3|RCK	Os02g0617500	LOC_Os02g40450	vegetative	MER3 is required for normal meiotic crossover formation, but not for presynaptic alignment in rice	The null mutation of MER3 results in complete sterility without any vegetative defects
MER3|RCK	Os02g0617500	LOC_Os02g40450	flower	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
MER3|RCK	Os02g0617500	LOC_Os02g40450	flower	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Because rice and Arabidopsis, respectively, are members of monocots and eudicots, two largest groups of flowering plants, our results suggest that the functions of SDS and RCK are likely conserved in flowering plants
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiotic	MER3 is required for normal meiotic crossover formation, but not for presynaptic alignment in rice	MER3 is required for normal meiotic crossover formation, but not for presynaptic alignment in rice
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiotic	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Further cytological examination of male meiocytes revealed that the SDS deficiency led to defects in homolog interaction and bivalent formation in meiotic prophase I, and RCK deficiency resulted in defective meiotic crossover formation
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiotic	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiotic	The role of OsMSH5 in crossover formation during rice meiosis	OsMSH5 can be loaded onto meiotic chromosomes in Oszip4, Osmer3, and hei10
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiotic	OsAM1 is required for leptotene-zygotene transition in rice	In the absence of OsAM1, many other critical meiotic components, including PAIR2, ZEP1 and OsMER3, could not be correctly installed onto chromosomes
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Several key meiotic proteins, including ZEP1 and OsMER3, were not loaded normally onto chromosomes in Oscom1 mutants, whereas the localization of OsREC8, PAIR2 and PAIR3 seemed to be normal
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Moreover, OsCOM1 was loaded normally onto meiotic chromosomes in Osrec8, zep1 and Osmer3 mutants, but could not be properly loaded in Osam1, pair2 and OsSPO11-1(RNAi) plants
MER3|RCK	Os02g0617500	LOC_Os02g40450	sterility	MER3 is required for normal meiotic crossover formation, but not for presynaptic alignment in rice	The null mutation of MER3 results in complete sterility without any vegetative defects
MER3|RCK	Os02g0617500	LOC_Os02g40450	pollen	MER3 is required for normal meiotic crossover formation, but not for presynaptic alignment in rice	Cytological analyses show that chiasma frequency is reduced dramatically in mer3 mutants and the remaining chiasmata distribute randomly among different pollen mother cells, implying possible coexistence of two kinds of crossover in rice
MER3|RCK	Os02g0617500	LOC_Os02g40450	pollen	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
MER3|RCK	Os02g0617500	LOC_Os02g40450	fertility	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
MER3|RCK	Os02g0617500	LOC_Os02g40450	meiosis	OsAM1 is required for leptotene-zygotene transition in rice	In contrast, in pair2, Osmer3 and zep1 mutants, OsAM1 could be loaded normally, suggesting that OsAM1 plays a fundamental role in building the proper chromosome structure at the beginning of meiosis
MetRS|MRS	Os06g0508700	LOC_Os06g31210	catalytic potency	A recurrent general RNA binding domain appended to plant methionyl-tRNA synthetase acts as a cis-acting cofactor for aminoacylation	Therefore, at the concentrations of free, non-aminoacylated tRNA prevailing within the cell (0.1 M), the tRNA binding ability of the EMAPII-like domain significantly improves the catalytic potency of plant MetRS.
MetRS|MRS	Os06g0508700	LOC_Os06g31210	stem	A recurrent general RNA binding domain appended to plant methionyl-tRNA synthetase acts as a cis-acting cofactor for aminoacylation	Therefore, in the native enzymes, the EMAPII/Trbp-like domains of MetRSs are likely to be located near the acceptor stem of tRNA.
MFAP1	Os06g0335101	LOC_Os06g22850	growth	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield.	 The time-course experiment data reveal that the expression of miR1871 and MFAP1 in rice leaves, panicles and basal internode is dynamic during the whole growth period to manipulate the resistance and yield traits
MFAP1	Os06g0335101	LOC_Os06g22850	resistance	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield.	 Conversely, the transgenic lines overexpressing MFAP1 (OXMFAP1) or overexpressing both MFAP1 and miR1871 (OXMFAP1/OX1871) resemble the resistance of MIM1871
MFAP1	Os06g0335101	LOC_Os06g22850	resistance	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield.	 The time-course experiment data reveal that the expression of miR1871 and MFAP1 in rice leaves, panicles and basal internode is dynamic during the whole growth period to manipulate the resistance and yield traits
MFAP1	Os06g0335101	LOC_Os06g22850	yield	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield.	 The time-course experiment data reveal that the expression of miR1871 and MFAP1 in rice leaves, panicles and basal internode is dynamic during the whole growth period to manipulate the resistance and yield traits
MFAP1	Os06g0335101	LOC_Os06g22850	PAMP-triggered immunity	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield	Intriguingly, miR1871 suppresses the expression of LOC_Os06g22850, which encodes a microfibrillar-associated protein (MFAP1) locating nearby the cell wall and positively regulating PTI responses.
MFAP1	Os06g0335101	LOC_Os06g22850	immunity	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield	Intriguingly, miR1871 suppresses the expression of LOC_Os06g22850, which encodes a microfibrillar-associated protein (MFAP1) locating nearby the cell wall and positively regulating PTI responses.
MFP|AIM1	Os02g0274100	LOC_Os02g17390	root	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	The reduced root meristem activity of aim1 results from reduced salicylic acid (SA) levels and can be rescued by SA application
MFP|AIM1	Os02g0274100	LOC_Os02g17390	root	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	Like SA, ROS application substantially increased root length and root meristem activity in aim1
MFP|AIM1	Os02g0274100	LOC_Os02g17390	root	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	These results suggest that AIM1 is required for root growth in rice due to its critical role in SA biosynthesis: SA maintains root meristem activity through promoting ROS accumulation by inducing the activity of WRKY transcriptional repressors, which repress the expression of redox and ROS-scavenging genes
MFP|AIM1	Os02g0274100	LOC_Os02g17390	growth	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	These results suggest that AIM1 is required for root growth in rice due to its critical role in SA biosynthesis: SA maintains root meristem activity through promoting ROS accumulation by inducing the activity of WRKY transcriptional repressors, which repress the expression of redox and ROS-scavenging genes
MFP|AIM1	Os02g0274100	LOC_Os02g17390	salicylic acid	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	The reduced root meristem activity of aim1 results from reduced salicylic acid (SA) levels and can be rescued by SA application
MFP|AIM1	Os02g0274100	LOC_Os02g17390	meristem	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	The reduced root meristem activity of aim1 results from reduced salicylic acid (SA) levels and can be rescued by SA application
MFP|AIM1	Os02g0274100	LOC_Os02g17390	meristem	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	Like SA, ROS application substantially increased root length and root meristem activity in aim1
MFP|AIM1	Os02g0274100	LOC_Os02g17390	meristem	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	These results suggest that AIM1 is required for root growth in rice due to its critical role in SA biosynthesis: SA maintains root meristem activity through promoting ROS accumulation by inducing the activity of WRKY transcriptional repressors, which repress the expression of redox and ROS-scavenging genes
MFP|AIM1	Os02g0274100	LOC_Os02g17390	sa	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	The reduced root meristem activity of aim1 results from reduced salicylic acid (SA) levels and can be rescued by SA application
MFP|AIM1	Os02g0274100	LOC_Os02g17390	sa	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	These results suggest that AIM1 is required for root growth in rice due to its critical role in SA biosynthesis: SA maintains root meristem activity through promoting ROS accumulation by inducing the activity of WRKY transcriptional repressors, which repress the expression of redox and ROS-scavenging genes
MFP|AIM1	Os02g0274100	LOC_Os02g17390	SA	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	The reduced root meristem activity of aim1 results from reduced salicylic acid (SA) levels and can be rescued by SA application
MFP|AIM1	Os02g0274100	LOC_Os02g17390	SA	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	These results suggest that AIM1 is required for root growth in rice due to its critical role in SA biosynthesis: SA maintains root meristem activity through promoting ROS accumulation by inducing the activity of WRKY transcriptional repressors, which repress the expression of redox and ROS-scavenging genes
MFP|AIM1	Os02g0274100	LOC_Os02g17390	root length	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	Like SA, ROS application substantially increased root length and root meristem activity in aim1
MFP|AIM1	Os02g0274100	LOC_Os02g17390	root meristem	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	The reduced root meristem activity of aim1 results from reduced salicylic acid (SA) levels and can be rescued by SA application
MFP|AIM1	Os02g0274100	LOC_Os02g17390	root meristem	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	Like SA, ROS application substantially increased root length and root meristem activity in aim1
MFP|AIM1	Os02g0274100	LOC_Os02g17390	root meristem	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for Root Meristem Activity in Rice.	These results suggest that AIM1 is required for root growth in rice due to its critical role in SA biosynthesis: SA maintains root meristem activity through promoting ROS accumulation by inducing the activity of WRKY transcriptional repressors, which repress the expression of redox and ROS-scavenging genes
MFS1	Os05g0497200	LOC_Os05g41760	sterile	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	In addition, the sterile lemma was homeotically converted to the rudimentary glume and the body of the palea was degenerated in mfs1
MFS1	Os05g0497200	LOC_Os05g41760	sterile	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	Furthermore, our findings suggest that MFS1 positively regulates the expression of LONG STERILE LEMMA and the INDETERMINATE SPIKELET1 (IDS1)-like genes SUPERNUMERARY BRACT and OsIDS1
MFS1	Os05g0497200	LOC_Os05g41760	meristem	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	In this study, we identified a rice (Oryza sativa) spikelet mutant, multi-floret spikelet1 (mfs1), that showed delayed transformation of spikelet meristems to floral meristems, which resulted in an extra hull-like organ and an elongated rachilla
MFS1	Os05g0497200	LOC_Os05g41760	meristem	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	These results suggest that the MULTI-FLORET SPIKELET1 (MFS1) gene plays an important role in the regulation of spikelet meristem determinacy and floral organ identity
MFS1	Os05g0497200	LOC_Os05g41760	meristem	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	MFS1 messenger RNA is expressed in various tissues, especially in the spikelet and floral meristems
MFS1	Os05g0497200	LOC_Os05g41760	palea	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	In addition, the sterile lemma was homeotically converted to the rudimentary glume and the body of the palea was degenerated in mfs1
MFS1	Os05g0497200	LOC_Os05g41760	spikelet meristem	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	In this study, we identified a rice (Oryza sativa) spikelet mutant, multi-floret spikelet1 (mfs1), that showed delayed transformation of spikelet meristems to floral meristems, which resulted in an extra hull-like organ and an elongated rachilla
MFS1	Os05g0497200	LOC_Os05g41760	spikelet meristem	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	These results suggest that the MULTI-FLORET SPIKELET1 (MFS1) gene plays an important role in the regulation of spikelet meristem determinacy and floral organ identity
MFS1	Os05g0497200	LOC_Os05g41760	floral meristem	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	In this study, we identified a rice (Oryza sativa) spikelet mutant, multi-floret spikelet1 (mfs1), that showed delayed transformation of spikelet meristems to floral meristems, which resulted in an extra hull-like organ and an elongated rachilla
MFS1	Os05g0497200	LOC_Os05g41760	floral meristem	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	MFS1 messenger RNA is expressed in various tissues, especially in the spikelet and floral meristems
MFS1	Os05g0497200	LOC_Os05g41760	ethylene	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	MFS1 belongs to an unknown function clade in the APETALA2/ethylene-responsive factor (AP2/ERF) family
MFS1	Os05g0497200	LOC_Os05g41760	floral	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	In this study, we identified a rice (Oryza sativa) spikelet mutant, multi-floret spikelet1 (mfs1), that showed delayed transformation of spikelet meristems to floral meristems, which resulted in an extra hull-like organ and an elongated rachilla
MFS1	Os05g0497200	LOC_Os05g41760	floral	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	These results suggest that the MULTI-FLORET SPIKELET1 (MFS1) gene plays an important role in the regulation of spikelet meristem determinacy and floral organ identity
MFS1	Os05g0497200	LOC_Os05g41760	floral	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	MFS1 messenger RNA is expressed in various tissues, especially in the spikelet and floral meristems
MFS1	Os05g0497200	LOC_Os05g41760	spikelet	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	In this study, we identified a rice (Oryza sativa) spikelet mutant, multi-floret spikelet1 (mfs1), that showed delayed transformation of spikelet meristems to floral meristems, which resulted in an extra hull-like organ and an elongated rachilla
MFS1	Os05g0497200	LOC_Os05g41760	spikelet	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	These results suggest that the MULTI-FLORET SPIKELET1 (MFS1) gene plays an important role in the regulation of spikelet meristem determinacy and floral organ identity
MFS1	Os05g0497200	LOC_Os05g41760	spikelet	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	MFS1 messenger RNA is expressed in various tissues, especially in the spikelet and floral meristems
MFS1	Os05g0497200	LOC_Os05g41760	spikelet	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	Furthermore, our findings suggest that MFS1 positively regulates the expression of LONG STERILE LEMMA and the INDETERMINATE SPIKELET1 (IDS1)-like genes SUPERNUMERARY BRACT and OsIDS1
MFS1	Os05g0497200	LOC_Os05g41760	lemma	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	In addition, the sterile lemma was homeotically converted to the rudimentary glume and the body of the palea was degenerated in mfs1
MFS1	Os05g0497200	LOC_Os05g41760	lemma	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice	Furthermore, our findings suggest that MFS1 positively regulates the expression of LONG STERILE LEMMA and the INDETERMINATE SPIKELET1 (IDS1)-like genes SUPERNUMERARY BRACT and OsIDS1
MHZ1|OsHK1|HK1	Os06g0654300	LOC_Os06g44410	root	Histidine kinase MHZ1/OsHK1 interacts with ethylene receptors to regulate root growth in rice.	Here, through an analysis of a rice ethylene-response mutant mhz1, we show that MHZ1 positively modulates root ethylene responses
MHZ1|OsHK1|HK1	Os06g0654300	LOC_Os06g44410	ethylene	Histidine kinase MHZ1/OsHK1 interacts with ethylene receptors to regulate root growth in rice.	Here, through an analysis of a rice ethylene-response mutant mhz1, we show that MHZ1 positively modulates root ethylene responses
MHZ1|OsHK1|HK1	Os06g0654300	LOC_Os06g44410	Kinase	Histidine kinase MHZ1/OsHK1 interacts with ethylene receptors to regulate root growth in rice.	MHZ1 encodes the rice histidine kinase OsHK1
MHZ1|OsHK1|HK1	Os06g0654300	LOC_Os06g44410	ethylene response	Histidine kinase MHZ1/OsHK1 interacts with ethylene receptors to regulate root growth in rice.	Here, through an analysis of a rice ethylene-response mutant mhz1, we show that MHZ1 positively modulates root ethylene responses
MHZ1|OsHK1|HK1	Os06g0654300	LOC_Os06g44410	kinase	Histidine kinase MHZ1/OsHK1 interacts with ethylene receptors to regulate root growth in rice.	MHZ1 encodes the rice histidine kinase OsHK1
MHZ11	Os05g0210100	LOC_Os05g11950	root	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	Our study reveals a previously unidentified mechanism by which MHZ11 participates in ethylene signaling for regulation of root growth in rice
MHZ11	Os05g0210100	LOC_Os05g11950	growth	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	Our study reveals a previously unidentified mechanism by which MHZ11 participates in ethylene signaling for regulation of root growth in rice
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	Here, from analysis of an ethylene insensitive mutant mhz11, we identified a GDSL lipase MHZ11 which modulates ethylene signaling in rice roots
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	MHZ11 overexpression caused constitutive ethylene response in roots
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	Genetically, MHZ11 acts at the ethylene receptor OsERS2 upstream of OsCTR2 and OsEIN2
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	MHZ11 mutation maintains more OsCTR2 in phosphorylated form whereas MHZ11 overexpression promotes ethylene inhibition of OsCTR2 phosphorylation
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	MHZ11 co-localized with the ethylene receptor OsERS2, and its effect on OsCTR2 phosphorylation requires ethylene perception and signaling initiation
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	Blocking sterol biosynthesis partially rescued mhz11 ethylene response likely by reducing receptor-OsCTR2 interaction and OsCTR2 phosphorylation
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	We propose that MHZ11 works to reduce sterol level to impair receptor-OsCTR2 interaction and OsCTR2 phosphorylation for triggering of signaling upon ethylene treatment
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	Our study reveals a previously unidentified mechanism by which MHZ11 participates in ethylene signaling for regulation of root growth in rice
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene response	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	MHZ11 overexpression caused constitutive ethylene response in roots
MHZ11	Os05g0210100	LOC_Os05g11950	ethylene response	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	Blocking sterol biosynthesis partially rescued mhz11 ethylene response likely by reducing receptor-OsCTR2 interaction and OsCTR2 phosphorylation
MHZ11	Os05g0210100	LOC_Os05g11950	root growth	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	Our study reveals a previously unidentified mechanism by which MHZ11 participates in ethylene signaling for regulation of root growth in rice
MHZ3	Os06g0115200	LOC_Os06g02480	ethylene	Membrane protein MHZ3 stabilizes OsEIN2 in rice by interacting with its Nramp-like domain.	The association of MHZ3 with the Nramp-like domain is crucial for OsEIN2 accumulation, demonstrating the significance of the OsEIN2 transmembrane domains in ethylene signaling
MHZ3	Os06g0115200	LOC_Os06g02480	ethylene	Membrane protein MHZ3 stabilizes OsEIN2 in rice by interacting with its Nramp-like domain.	Together, these results suggest that ethylene-induced MHZ3 stabilizes OsEIN2 likely by binding to its Nramp-like domain and impeding protein ubiquitination to facilitate ethylene signal transduction
MHZ4	Os01g0128300	LOC_Os01g03750	root	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings
MHZ4	Os01g0128300	LOC_Os01g03750	growth	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings
MHZ4	Os01g0128300	LOC_Os01g03750	ethylene	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings
MHZ4	Os01g0128300	LOC_Os01g03750	map-based cloning	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings	MHZ4 was identified through map-based cloning and encoded a chloroplast-localized membrane protein homologous to Arabidopsis thaliana (Arabidopsis) ABA4, which is responsible for a branch of ABA biosynthesis.
MHZ4	Os01g0128300	LOC_Os01g03750	ABA	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings	MHZ4 mutation reduced ABA level, but promoted ethylene production. Ethylene induced MHZ4 expression and promoted ABA accumulation in roots.
MHZ4	Os01g0128300	LOC_Os01g03750	ethylene response	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings	MHZ4 overexpression resulted in enhanced and reduced ethylene response in roots and coleoptiles, respectively.
MHZ4	Os01g0128300	LOC_Os01g03750	branching	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings	At mature stage, mhz4 mutation affects branching and adventitious root formation on stem nodes of higher positions, as well as yield-related traits.
MHZ4	Os01g0128300	LOC_Os01g03750	adventitious root formation	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings	At mature stage, mhz4 mutation affects branching and adventitious root formation on stem nodes of higher positions, as well as yield-related traits.
MHZ4	Os01g0128300	LOC_Os01g03750	yield	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings	At mature stage, mhz4 mutation affects branching and adventitious root formation on stem nodes of higher positions, as well as yield-related traits.
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	leaf	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 was primarily expressed in root and leaf vascular tissues, with low level in the tapetum, and was induced by drought and other abiotic stresses
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	root	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 was primarily expressed in root and leaf vascular tissues, with low level in the tapetum, and was induced by drought and other abiotic stresses
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	anther	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	Our findings suggest that MID1 is a transcriptional regulator that promotes rice male development under drought by modulating the expressions of drought-related and anther developmental genes and provide valuable information for crop improvement
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	development	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	Our findings suggest that MID1 is a transcriptional regulator that promotes rice male development under drought by modulating the expressions of drought-related and anther developmental genes and provide valuable information for crop improvement
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	drought	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	drought	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	We show here that MID1 (MYB Important for Drought Response1), encoding a putative R-R-type MYB-like transcription factor, can improve rice yield under drought
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	drought	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 was primarily expressed in root and leaf vascular tissues, with low level in the tapetum, and was induced by drought and other abiotic stresses
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	drought	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	Our findings suggest that MID1 is a transcriptional regulator that promotes rice male development under drought by modulating the expressions of drought-related and anther developmental genes and provide valuable information for crop improvement
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	transcription factor	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	We show here that MID1 (MYB Important for Drought Response1), encoding a putative R-R-type MYB-like transcription factor, can improve rice yield under drought
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	yield	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	We show here that MID1 (MYB Important for Drought Response1), encoding a putative R-R-type MYB-like transcription factor, can improve rice yield under drought
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	abiotic stress	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 was primarily expressed in root and leaf vascular tissues, with low level in the tapetum, and was induced by drought and other abiotic stresses
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	reproductive	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	stress	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	nucleus	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 was localized to the nucleus and could activate gene expression in yeast, and its homologs were identified in many other plants with high levels sequence similarity
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	anther development	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	Our findings suggest that MID1 is a transcriptional regulator that promotes rice male development under drought by modulating the expressions of drought-related and anther developmental genes and provide valuable information for crop improvement
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	biotic stress	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 was primarily expressed in root and leaf vascular tissues, with low level in the tapetum, and was induced by drought and other abiotic stresses
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	drought stress	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	drought stress	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	transcriptional regulator	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	Our findings suggest that MID1 is a transcriptional regulator that promotes rice male development under drought by modulating the expressions of drought-related and anther developmental genes and provide valuable information for crop improvement
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	reproductive development	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	transcription factor	OsARM1, an R2R3 MYB Transcription Factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.	Here, we show that the rice R2R3 MYB transcription factor OsARM1 (ARSENITE-RESPONSIVE MYB1) regulates As-associated transporters genes
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	transcription factor	OsARM1, an R2R3 MYB Transcription Factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.	Our findings suggest that the OsARM1 transcription factor has essential functions in regulating As uptake and root-to-shoot translocation in rice
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	vascular bundle	OsARM1, an R2R3 MYB Transcription Factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.	Histochemical analysis of OsARM1pro::GUS lines indicated that OsARM1 was expressed in the phloem of vascular bundles in basal and upper nodes
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	tolerance	OsARM1, an R2R3 MYB Transcription Factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.	Knockout of OsARM1 (OsARM1-KO CRISPR/Cas9-generated mutants) improved tolerance to As(III) and overexpression of OsARM1 (OsARM1-OE lines) increased sensitivity to As(III)
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	nucleus	OsARM1, an R2R3 MYB Transcription Factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.	Treatment with As(III) induced OsARM1 transcript accumulation and an OsARM1-GFP fusion localized to the nucleus
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	phloem	OsARM1, an R2R3 MYB Transcription Factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.	Histochemical analysis of OsARM1pro::GUS lines indicated that OsARM1 was expressed in the phloem of vascular bundles in basal and upper nodes
MID1|OsARM1	Os05g0442400	LOC_Os05g37060	node	OsARM1, an R2R3 MYB Transcription Factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.	In particular, the As(III) levels in node I were significantly higher in OsARM1-KOs, but significantly lower in OsARM1-OEs, compared to wild-type plants, implying that OsARM1 is important for the regulation of root-to-shoot translocation of As
MIR	Os12g0282000	LOC_Os12g18410	growth	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	Growth in the MIR T-DNA knockout rice mutant (mir) was significantly impaired compared to wild-type (WT) plants when grown under Fe-deficient or -sufficient conditions
MIR	Os12g0282000	LOC_Os12g18410	iron	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	We cloned and characterized a mitochondrial iron-regulated (MIR) gene in rice involved in Fe homeostasis
MIR	Os12g0282000	LOC_Os12g18410	iron	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis
MIR	Os12g0282000	LOC_Os12g18410	mitochondria	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	We cloned and characterized a mitochondrial iron-regulated (MIR) gene in rice involved in Fe homeostasis
MIR	Os12g0282000	LOC_Os12g18410	mitochondria	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	MIR, when expressed in tobacco BY-2 cells, was localized to the mitochondria
MIR	Os12g0282000	LOC_Os12g18410	mitochondria	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	These results clearly suggest that MIR is a rice-specific mitochondrial protein, recently evolved, and plays a significant role in Fe homeostasis
MIR	Os12g0282000	LOC_Os12g18410	mitochondria	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis
MIR	Os12g0282000	LOC_Os12g18410	root	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	MIR transcripts were greatly increased in response to Fe deficiency in roots and shoot tissue
MIR	Os12g0282000	LOC_Os12g18410	root	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	Furthermore, mir plants accumulated more than twice the amount of Fe in shoot and root tissue compared to WT plants when grown under either Fe-sufficient or -deficient conditions
MIR	Os12g0282000	LOC_Os12g18410	root	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	Despite the high accumulation of Fe in roots and shoots, mir plants triggered the expression of Fe-deficiency-inducible genes, indicating that mir may not be able to utilize Fe for physiological functions
MIR	Os12g0282000	LOC_Os12g18410	homeostasis	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	We cloned and characterized a mitochondrial iron-regulated (MIR) gene in rice involved in Fe homeostasis
MIR	Os12g0282000	LOC_Os12g18410	homeostasis	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	These results clearly suggest that MIR is a rice-specific mitochondrial protein, recently evolved, and plays a significant role in Fe homeostasis
MIR	Os12g0282000	LOC_Os12g18410	homeostasis	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis
MIR	Os12g0282000	LOC_Os12g18410	shoot	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	MIR transcripts were greatly increased in response to Fe deficiency in roots and shoot tissue
MIR	Os12g0282000	LOC_Os12g18410	shoot	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	Furthermore, mir plants accumulated more than twice the amount of Fe in shoot and root tissue compared to WT plants when grown under either Fe-sufficient or -deficient conditions
MIR	Os12g0282000	LOC_Os12g18410	shoot	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis	Despite the high accumulation of Fe in roots and shoots, mir plants triggered the expression of Fe-deficiency-inducible genes, indicating that mir may not be able to utilize Fe for physiological functions
miR1432	None	None	grain	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	Here, we show that suppressed expression of rice miR1432 (STTM1432) significantly improves grain weight by enhancing grain filling rate and leads to an increase in overall grain yield up to 17
miR1432	None	None	grain yield	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	Here, we show that suppressed expression of rice miR1432 (STTM1432) significantly improves grain weight by enhancing grain filling rate and leads to an increase in overall grain yield up to 17
miR1432	None	None	yield	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	Here, we show that suppressed expression of rice miR1432 (STTM1432) significantly improves grain weight by enhancing grain filling rate and leads to an increase in overall grain yield up to 17
miR1432	None	None	auxin	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	In addition, RNA-seq based transcriptomic analyses of transgenic plants with altered expression of miR1432 demonstrated that downstream genes of miR1432-regulated network are involved in fatty acid metabolism and phytohormones biosynthesis and also overlap with the enrichment analysis of co-expressed genes of OsACOT, which is consistent with the increased levels of auxin and abscisic acid in STTM1432 and OXmACOT plants
miR1432	None	None	grain filling	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	Here, we show that suppressed expression of rice miR1432 (STTM1432) significantly improves grain weight by enhancing grain filling rate and leads to an increase in overall grain yield up to 17
miR1432	None	None	grain weight	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	Here, we show that suppressed expression of rice miR1432 (STTM1432) significantly improves grain weight by enhancing grain filling rate and leads to an increase in overall grain yield up to 17
miR1432	None	None	abscisic acid	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	In addition, RNA-seq based transcriptomic analyses of transgenic plants with altered expression of miR1432 demonstrated that downstream genes of miR1432-regulated network are involved in fatty acid metabolism and phytohormones biosynthesis and also overlap with the enrichment analysis of co-expressed genes of OsACOT, which is consistent with the increased levels of auxin and abscisic acid in STTM1432 and OXmACOT plants
miR156	None	None	shoot	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	We found that mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size, whereas mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy
miR156	None	None	grain	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.
miR156	None	None	grain	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	We found that mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size, whereas mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy
miR156	None	None	seed	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.
miR156	None	None	seed	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	We found that mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size, whereas mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy
miR156	None	None	seed	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	Mechanistically, mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway
miR156	None	None	gibberellin	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.
miR156	None	None	gibberellin	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	Mechanistically, mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway
miR156	None	None	grain yield	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.
miR156	None	None	yield	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.
miR156	None	None	grain size	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	We found that mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size, whereas mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy
miR156	None	None	architecture	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	We found that mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size, whereas mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy
miR156	None	None	architecture	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	Mechanistically, mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway
miR156	None	None	ga	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	Mechanistically, mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway
miR156	None	None	Gibberellin	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.
miR156	None	None	Gibberellin	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	Mechanistically, mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway
miR156	None	None	GA	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	Mechanistically, mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway
miR156	None	None	plant architecture	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	Mechanistically, mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway
miR156	None	None	shoot architecture	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	We found that mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size, whereas mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy
miR156	None	None	dormancy	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.
miR156	None	None	dormancy	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	We found that mutations in one MIR156 subfamily enhance seed dormancy and suppress PHS with negligible effects on shoot architecture and grain size, whereas mutations in another MIR156 subfamily modify shoot architecture and increase grain size but have minimal effects on seed dormancy
miR156	None	None	dormancy	The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice.	Mechanistically, mir156 mutations enhance seed dormancy by suppressing the gibberellin (GA) pathway through de-represssion of the miR156 target gene Ideal Plant Architecture 1 (IPA1), which directly regulates multiple genes in the GA pathway
miR156	None	None	yield	Expressing a Target Mimic of miR156fhl-3p Enhances Rice Blast Disease Resistance Without Yield Penalty by Improving SPL14 Expression	miR156 is a conserved miRNA, and most previous studies focus on its roles in plant growth, development, and yield determinacy
miR156	None	None	plant growth	Expressing a Target Mimic of miR156fhl-3p Enhances Rice Blast Disease Resistance Without Yield Penalty by Improving SPL14 Expression	miR156 is a conserved miRNA, and most previous studies focus on its roles in plant growth, development, and yield determinacy
miR156f	None	None	tiller	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	In contrast, plants over-expression a miR156f target mimic (MIM156fOE) had a reduced tiller number and increased height
miR156f	None	None	architecture	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	Genetic analysis showed that OsSPL7 is a target of miR156f that regulates plant architecture
miR156f	None	None	height	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	In contrast, plants over-expression a miR156f target mimic (MIM156fOE) had a reduced tiller number and increased height
miR156f	None	None	tiller number	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	In contrast, plants over-expression a miR156f target mimic (MIM156fOE) had a reduced tiller number and increased height
miR156f	None	None	plant architecture	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	Genetic analysis showed that OsSPL7 is a target of miR156f that regulates plant architecture
miR162b	Os04g0488650	None	resistance	Identification and Characterization of ABA-Responsive MicroRNAs in Rice.	Finally, miR162b and its target OsTRE1 were shown to affect rice resistance to drought stress, suggesting that miR162b increases resistance to drought by targeting OsTRE1
miR162b	Os04g0488650	None	drought	Identification and Characterization of ABA-Responsive MicroRNAs in Rice.	Finally, miR162b and its target OsTRE1 were shown to affect rice resistance to drought stress, suggesting that miR162b increases resistance to drought by targeting OsTRE1
miR162b	Os04g0488650	None	drought stress	Identification and Characterization of ABA-Responsive MicroRNAs in Rice.	Finally, miR162b and its target OsTRE1 were shown to affect rice resistance to drought stress, suggesting that miR162b increases resistance to drought by targeting OsTRE1
miR166	None	None	transcription factor	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.
miR166	None	None	grain	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.
miR166	None	None	grain quality	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.
miR166	None	None	quality	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.
miR167d	None	None	flower	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice.	 These findings indicate that the appropriate expression of miR167d is crucial and the miR167d-ARFs module plays important roles in the regulation of flower opening and stigma size in rice
miR167d	None	None	floral	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice.	 Blocking miR167d by target mimicry also led to a morphological alteration of the individual floral organs, including a reduction in stigma size and alteration of lodicule cell morphology, but did not show the cleistogamous phenotype
miR167d	None	None	stamen	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice.	 The overexpression of miR167d (OX167d) resulted in failed elongation of stamen filaments, increased stigma size, and morphological alteration of lodicule, resulting in cleistogamy
miR167d	None	None	floral organ	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice.	 Blocking miR167d by target mimicry also led to a morphological alteration of the individual floral organs, including a reduction in stigma size and alteration of lodicule cell morphology, but did not show the cleistogamous phenotype
miR167d	None	None	flower opening	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
miR167d	None	None	stigma size	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
miR168	None	None	jasmonate	Jasmonate Signaling Enhances RNA Silencing and Antiviral Defense in Rice.	Here, we show that jasmonate (JA) signaling transcriptionally activates Argonaute 18 (AGO18), a core RNA silencing component that promotes rice antiviral defense through sequestering miR168 and miR528, which repress key antiviral defense proteins
miR168	None	None	defense	Jasmonate Signaling Enhances RNA Silencing and Antiviral Defense in Rice.	Here, we show that jasmonate (JA) signaling transcriptionally activates Argonaute 18 (AGO18), a core RNA silencing component that promotes rice antiviral defense through sequestering miR168 and miR528, which repress key antiviral defense proteins
miR169o	None	None	resistance	Overexpression of miR169o, an Overlapping microRNA in Response to Both Nitrogen Limitation and Bacterial Infection, Promotes Nitrogen Use Efficiency and Susceptibility to Bacterial Blight in Rice.	Therefore, the overlapping miR169o contributes to increase N use efficiency and negatively regulates the resistance to bacterial blight in rice
miR169o	None	None	stress	Overexpression of miR169o, an Overlapping microRNA in Response to Both Nitrogen Limitation and Bacterial Infection, Promotes Nitrogen Use Efficiency and Susceptibility to Bacterial Blight in Rice.	Transcript level assays showed that under different N supply conditions miR169o opposite regulated NRT2 which is reduced under normal N supply condition but remarkably induced under N limiting stress
miR169o	None	None	blight	Overexpression of miR169o, an Overlapping microRNA in Response to Both Nitrogen Limitation and Bacterial Infection, Promotes Nitrogen Use Efficiency and Susceptibility to Bacterial Blight in Rice.	Therefore, the overlapping miR169o contributes to increase N use efficiency and negatively regulates the resistance to bacterial blight in rice
miR169o	None	None	bacterial blight	Overexpression of miR169o, an Overlapping microRNA in Response to Both Nitrogen Limitation and Bacterial Infection, Promotes Nitrogen Use Efficiency and Susceptibility to Bacterial Blight in Rice.	Therefore, the overlapping miR169o contributes to increase N use efficiency and negatively regulates the resistance to bacterial blight in rice
miR2105	None	None	growth	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	 Under normal growth conditions, altered expression of miR2105 and OsbZIP86 displayed no substantial effect on rice growth
miR2105	None	None	Kinase	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
miR2105	None	None	kinase	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
miR2105	None	None	drought	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	 However, under drought conditions, miR2105 knockdown or OsbZIP86 overexpression transgenic rice plants showed higher ABA content, enhanced tolerance to drought, lower rates of water loss, and more stomatal closure of seedlings, compared with wild-type rice Zhonghua 11; in contrast, miR2105 overexpression, OsbZIP86 downregulation, and OsbZIP86 knockout plants displayed opposite phenotypes
miR2105	None	None	tolerance	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	 However, under drought conditions, miR2105 knockdown or OsbZIP86 overexpression transgenic rice plants showed higher ABA content, enhanced tolerance to drought, lower rates of water loss, and more stomatal closure of seedlings, compared with wild-type rice Zhonghua 11; in contrast, miR2105 overexpression, OsbZIP86 downregulation, and OsbZIP86 knockout plants displayed opposite phenotypes
miR2105	None	None	ABA	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
miR2105	None	None	ABA	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	 However, under drought conditions, miR2105 knockdown or OsbZIP86 overexpression transgenic rice plants showed higher ABA content, enhanced tolerance to drought, lower rates of water loss, and more stomatal closure of seedlings, compared with wild-type rice Zhonghua 11; in contrast, miR2105 overexpression, OsbZIP86 downregulation, and OsbZIP86 knockout plants displayed opposite phenotypes
miR2105	None	None	stomatal	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	 However, under drought conditions, miR2105 knockdown or OsbZIP86 overexpression transgenic rice plants showed higher ABA content, enhanced tolerance to drought, lower rates of water loss, and more stomatal closure of seedlings, compared with wild-type rice Zhonghua 11; in contrast, miR2105 overexpression, OsbZIP86 downregulation, and OsbZIP86 knockout plants displayed opposite phenotypes
miR2105	None	None	water loss	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	 However, under drought conditions, miR2105 knockdown or OsbZIP86 overexpression transgenic rice plants showed higher ABA content, enhanced tolerance to drought, lower rates of water loss, and more stomatal closure of seedlings, compared with wild-type rice Zhonghua 11; in contrast, miR2105 overexpression, OsbZIP86 downregulation, and OsbZIP86 knockout plants displayed opposite phenotypes
miR2105	None	None	 ABA 	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
miR2105	None	None	 ABA 	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	 However, under drought conditions, miR2105 knockdown or OsbZIP86 overexpression transgenic rice plants showed higher ABA content, enhanced tolerance to drought, lower rates of water loss, and more stomatal closure of seedlings, compared with wild-type rice Zhonghua 11; in contrast, miR2105 overexpression, OsbZIP86 downregulation, and OsbZIP86 knockout plants displayed opposite phenotypes
miR2105	None	None	ABA biosynthesis	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
miR2118	None	None	anther	miR2118-dependent U-rich phasiRNA production in rice anther wall development.	Our results demonstrate that the loss of miR2118 causes severe male and female sterility in rice, associated with marked morphological and developmental abnormalities in somatic anther wall cells
miR2118	None	None	sterility	miR2118-dependent U-rich phasiRNA production in rice anther wall development.	Our results demonstrate that the loss of miR2118 causes severe male and female sterility in rice, associated with marked morphological and developmental abnormalities in somatic anther wall cells
miR2118	None	None	male sterility	miR2118-dependent U-rich phasiRNA production in rice anther wall development.	Our results demonstrate that the loss of miR2118 causes severe male and female sterility in rice, associated with marked morphological and developmental abnormalities in somatic anther wall cells
miR2275	None	None	anther	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 OsAGO1d protein moves from anther wall cells into meiocytes, where it loads miR2275 to produce 24-nt phasiRNAs
MiR390	None	None	root	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.
MiR390	None	None	root	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	Here we show that miR390 induced by auxin promotes lateral root growth in rice
MiR390	None	None	root	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	MiR390 was found to be dominantly expressed at lateral root primordia and roots tips while miR393 mainly expressed in the base part of roots at very low level
MiR390	None	None	root	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	We propose that miR390 induced by auxin triggers the lateral root growth under normal growth conditions, meanwhile miR393 just lurks as a potentially regulative role; Once plants suffer from stresses, miR393 will be induced to negatively regulate miR390-mediated growth of lateral roots in rice
MiR390	None	None	growth	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.
MiR390	None	None	growth	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	Here we show that miR390 induced by auxin promotes lateral root growth in rice
MiR390	None	None	growth	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	We propose that miR390 induced by auxin triggers the lateral root growth under normal growth conditions, meanwhile miR393 just lurks as a potentially regulative role; Once plants suffer from stresses, miR393 will be induced to negatively regulate miR390-mediated growth of lateral roots in rice
MiR390	None	None	auxin	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	Here we show that miR390 induced by auxin promotes lateral root growth in rice
MiR390	None	None	auxin	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	However, the risen expression level of miR390 induced by auxin didn't affect the expression of miR393 and its target OsTIR1 (Transport Inhibitor Response 1)
MiR390	None	None	auxin	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	We propose that miR390 induced by auxin triggers the lateral root growth under normal growth conditions, meanwhile miR393 just lurks as a potentially regulative role; Once plants suffer from stresses, miR393 will be induced to negatively regulate miR390-mediated growth of lateral roots in rice
MiR390	None	None	lateral root	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.
MiR390	None	None	lateral root	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	Here we show that miR390 induced by auxin promotes lateral root growth in rice
MiR390	None	None	lateral root	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	MiR390 was found to be dominantly expressed at lateral root primordia and roots tips while miR393 mainly expressed in the base part of roots at very low level
MiR390	None	None	lateral root	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	We propose that miR390 induced by auxin triggers the lateral root growth under normal growth conditions, meanwhile miR393 just lurks as a potentially regulative role; Once plants suffer from stresses, miR393 will be induced to negatively regulate miR390-mediated growth of lateral roots in rice
miR394	None	None	leaf	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.
miR394	None	None	leaf	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Here, we functionally characterize the role of rice miR394 and its target, LEAF INCLINCATION 4 (LC4), which encodes an F-box protein, in the regulation of leaf inclination
miR394	None	None	leaf	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells
miR394	None	None	leaf	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture
miR394	None	None	auxin	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	LC4 interacts with SKP1, a component of the SCF E3 ubiquitin ligase complex, and transcription of both miR394 and LC4 are regulated by auxin
miR394	None	None	auxin	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture
miR394	None	None	development	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells
miR394	None	None	architecture	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture
miR394	None	None	auxin response	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	Rice plants with altered expression of miR394 or LC4 have altered auxin responses, indicating that the miR394-LC4 module mediates auxin effects important for determining rice leaf inclination and architecture
miR394	None	None	lamina	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells
miR394	None	None	Ubiquitin	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	LC4 interacts with SKP1, a component of the SCF E3 ubiquitin ligase complex, and transcription of both miR394 and LC4 are regulated by auxin
miR394	None	None	lamina joint	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	We show that miR394 and LC4 work, antagonistically, to regulate leaf lamina joint development and rice architecture, by modulating expansion and elongation of adaxial parenchyma cells
MIR396e	None	None	shoot	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
MIR396e	None	None	grain	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
MIR396e	None	None	grain	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Here, we performed gene editing of the MIR396 gene family in rice, and found that MIR396e and MIR396f are two important regulators of grain size and plant architecture
MIR396e	None	None	grain size	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
MIR396e	None	None	grain size	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Here, we performed gene editing of the MIR396 gene family in rice, and found that MIR396e and MIR396f are two important regulators of grain size and plant architecture
MIR396e	None	None	architecture	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
MIR396e	None	None	architecture	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Here, we performed gene editing of the MIR396 gene family in rice, and found that MIR396e and MIR396f are two important regulators of grain size and plant architecture
MIR396e	None	None	plant architecture	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Here, we performed gene editing of the MIR396 gene family in rice, and found that MIR396e and MIR396f are two important regulators of grain size and plant architecture
MIR396e	None	None	shoot architecture	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
MIR396f	None	None	shoot	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
MIR396f	None	None	grain	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
MIR396f	None	None	grain	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Here, we performed gene editing of the MIR396 gene family in rice, and found that MIR396e and MIR396f are two important regulators of grain size and plant architecture
MIR396f	None	None	grain size	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
MIR396f	None	None	grain size	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Here, we performed gene editing of the MIR396 gene family in rice, and found that MIR396e and MIR396f are two important regulators of grain size and plant architecture
MIR396f	None	None	architecture	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
MIR396f	None	None	architecture	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Here, we performed gene editing of the MIR396 gene family in rice, and found that MIR396e and MIR396f are two important regulators of grain size and plant architecture
MIR396f	None	None	plant architecture	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Here, we performed gene editing of the MIR396 gene family in rice, and found that MIR396e and MIR396f are two important regulators of grain size and plant architecture
MIR396f	None	None	shoot architecture	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.	Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice.
miR397	None	None	yield	Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing.	Interestingly, nearly 26 unknown QTLs previously implicated for rice yield overlapped with laccases and miR397 genes
miR408|OsMIR408|OsmiR408	Os01g0322700	None	drought	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	As a conserved microRNA (miRNA) family in plants, miR408 is known to be involved in different abiotic stress responses, including drought
miR408|OsMIR408|OsmiR408	Os01g0322700	None	drought	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	Interestingly, some studies indicated a species- and/or cultivar-specific drought-responsive characteristic of miR408 in plant drought stress
miR408|OsMIR408|OsmiR408	Os01g0322700	None	tolerance	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	These findings implied that miR408 could serve as a potential target for genetic manipulations to engineer perennial grass plants for improved water stress tolerance
miR408|OsMIR408|OsmiR408	Os01g0322700	None	abiotic stress	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	As a conserved microRNA (miRNA) family in plants, miR408 is known to be involved in different abiotic stress responses, including drought
miR408|OsMIR408|OsmiR408	Os01g0322700	None	stress	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	As a conserved microRNA (miRNA) family in plants, miR408 is known to be involved in different abiotic stress responses, including drought
miR408|OsMIR408|OsmiR408	Os01g0322700	None	stress	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	Interestingly, some studies indicated a species- and/or cultivar-specific drought-responsive characteristic of miR408 in plant drought stress
miR408|OsMIR408|OsmiR408	Os01g0322700	None	stress	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	These findings implied that miR408 could serve as a potential target for genetic manipulations to engineer perennial grass plants for improved water stress tolerance
miR408|OsMIR408|OsmiR408	Os01g0322700	None	biotic stress	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	As a conserved microRNA (miRNA) family in plants, miR408 is known to be involved in different abiotic stress responses, including drought
miR408|OsMIR408|OsmiR408	Os01g0322700	None	drought stress	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	Interestingly, some studies indicated a species- and/or cultivar-specific drought-responsive characteristic of miR408 in plant drought stress
miR408|OsMIR408|OsmiR408	Os01g0322700	None	stress tolerance	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	These findings implied that miR408 could serve as a potential target for genetic manipulations to engineer perennial grass plants for improved water stress tolerance
miR408|OsMIR408|OsmiR408	Os01g0322700	None	stress response	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	As a conserved microRNA (miRNA) family in plants, miR408 is known to be involved in different abiotic stress responses, including drought
miR408|OsMIR408|OsmiR408	Os01g0322700	None	ER stress	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass	These findings implied that miR408 could serve as a potential target for genetic manipulations to engineer perennial grass plants for improved water stress tolerance
miR408|OsMIR408|OsmiR408	Os01g0322700	None	grain	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	Analyses of gene expression patterns and functions indicated OsmiR408 is an embryo-specific miRNA that positively regulates grain size
miR408|OsMIR408|OsmiR408	Os01g0322700	None	grain size	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	Analyses of gene expression patterns and functions indicated OsmiR408 is an embryo-specific miRNA that positively regulates grain size
miR408|OsMIR408|OsmiR408	Os01g0322700	None	grain	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.
miR408|OsMIR408|OsmiR408	Os01g0322700	None	photosynthesis	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.
miR408|OsMIR408|OsmiR408	Os01g0322700	None	photosynthesis	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.	Further studies revealed that the cleavage of OsUCL8 by miR408 affects copper homeostasis in the plant cell, which, in turn, affects the abundance of plastocyanin proteins and photosynthesis in rice
miR408|OsMIR408|OsmiR408	Os01g0322700	None	grain yield	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.
miR408|OsMIR408|OsmiR408	Os01g0322700	None	yield	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.
miR408|OsMIR408|OsmiR408	Os01g0322700	None	homeostasis	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.	Further studies revealed that the cleavage of OsUCL8 by miR408 affects copper homeostasis in the plant cell, which, in turn, affects the abundance of plastocyanin proteins and photosynthesis in rice
miR408|OsMIR408|OsmiR408	Os01g0322700	None	copper	MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein.	Further studies revealed that the cleavage of OsUCL8 by miR408 affects copper homeostasis in the plant cell, which, in turn, affects the abundance of plastocyanin proteins and photosynthesis in rice
miR444	None	None	root	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Transgenic rice plants expressing miR444 target mimic improved rice root growth
miR444	None	None	root	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
miR444	None	None	growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Transgenic rice plants expressing miR444 target mimic improved rice root growth
miR444	None	None	growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
miR444	None	None	auxin	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
miR444	None	None	nitrate	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
miR444	None	None	root growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Transgenic rice plants expressing miR444 target mimic improved rice root growth
miR444	None	None	root growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
miR444	None	None	nitrate transporter	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
MIT	Os03g0296800	LOC_Os03g18550	transporter	The rice mitochondrial iron transporter is essential for plant growth	In plants, iron (Fe) is essential for mitochondrial electron transport, heme, and Fe-Sulphur (Fe-S) cluster synthesis; however, plant mitochondrial Fe transporters have not been identified
MIT	Os03g0296800	LOC_Os03g18550	transporter	The rice mitochondrial iron transporter is essential for plant growth	Here we show, identify and characterize the rice mitochondrial Fe transporter (MIT)
MIT	Os03g0296800	LOC_Os03g18550	transporter	The rice mitochondrial iron transporter is essential for plant growth	These results indicate that MIT is a mitochondrial Fe transporter essential for rice growth and development
MIT	Os03g0296800	LOC_Os03g18550	transporter	The rice mitochondrial iron transporter is essential for plant growth	The rice mitochondrial iron transporter is essential for plant growth
MIT	Os03g0296800	LOC_Os03g18550	transporter	Identification and characterization of the major mitochondrial Fe transporter in rice	The screening of 3,993 mutant lines for symptoms of Fe deficiency resulted in the identification and characterization of a major mitochondrial Fe transporter (MIT) in rice
MIT	Os03g0296800	LOC_Os03g18550	transporter	Identification and characterization of the major mitochondrial Fe transporter in rice	Identification and characterization of the major mitochondrial Fe transporter in rice
MIT	Os03g0296800	LOC_Os03g18550	transporter	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Here, we discuss the characterization of a rice vacuolar Fe transporter 2 (OsVIT2) T-DNA insertion line (osvit2) and report that the knockdown of OsVIT2 and mitochondrial Fe transporter (MIT) expression affects seed Fe localization
MIT	Os03g0296800	LOC_Os03g18550	growth	The rice mitochondrial iron transporter is essential for plant growth	MIT localized to the mitochondria and complemented the growth of Deltamrs3Deltamrs4 yeast defective in mitochondrial Fe transport
MIT	Os03g0296800	LOC_Os03g18550	growth	The rice mitochondrial iron transporter is essential for plant growth	The growth of MIT-knockdown (mit-2) plants was also significantly impaired despite abundant Fe accumulation
MIT	Os03g0296800	LOC_Os03g18550	growth	The rice mitochondrial iron transporter is essential for plant growth	These results indicate that MIT is a mitochondrial Fe transporter essential for rice growth and development
MIT	Os03g0296800	LOC_Os03g18550	growth	The rice mitochondrial iron transporter is essential for plant growth	The rice mitochondrial iron transporter is essential for plant growth
MIT	Os03g0296800	LOC_Os03g18550	iron	The rice mitochondrial iron transporter is essential for plant growth	In plants, iron (Fe) is essential for mitochondrial electron transport, heme, and Fe-Sulphur (Fe-S) cluster synthesis; however, plant mitochondrial Fe transporters have not been identified
MIT	Os03g0296800	LOC_Os03g18550	iron	The rice mitochondrial iron transporter is essential for plant growth	The rice mitochondrial iron transporter is essential for plant growth
MIT	Os03g0296800	LOC_Os03g18550	growth	Identification and characterization of the major mitochondrial Fe transporter in rice	MIT was found to localize to mitochondria and to complement the growth of a yeast strain defective in mitochondrial Fe transport
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	The rice mitochondrial iron transporter is essential for plant growth	In plants, iron (Fe) is essential for mitochondrial electron transport, heme, and Fe-Sulphur (Fe-S) cluster synthesis; however, plant mitochondrial Fe transporters have not been identified
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	The rice mitochondrial iron transporter is essential for plant growth	Here we show, identify and characterize the rice mitochondrial Fe transporter (MIT)
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	The rice mitochondrial iron transporter is essential for plant growth	MIT localized to the mitochondria and complemented the growth of Deltamrs3Deltamrs4 yeast defective in mitochondrial Fe transport
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	The rice mitochondrial iron transporter is essential for plant growth	Further, the decrease in the activity of the mitochondrial and cytosolic Fe-S enzyme, aconitase, indicated that Fe-S cluster synthesis is affected in mit-2 plants
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	The rice mitochondrial iron transporter is essential for plant growth	These results indicate that MIT is a mitochondrial Fe transporter essential for rice growth and development
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	The rice mitochondrial iron transporter is essential for plant growth	The rice mitochondrial iron transporter is essential for plant growth
MIT	Os03g0296800	LOC_Os03g18550	tiller	Identification and characterization of the major mitochondrial Fe transporter in rice	The knock-out of MIT resulted in a lethal phenotype, and in knock-down plants, several agronomic characteristics were compromised, such as plant height, average number of tillers, days to flower, fertility, and yield
MIT	Os03g0296800	LOC_Os03g18550	yield	Identification and characterization of the major mitochondrial Fe transporter in rice	The knock-out of MIT resulted in a lethal phenotype, and in knock-down plants, several agronomic characteristics were compromised, such as plant height, average number of tillers, days to flower, fertility, and yield
MIT	Os03g0296800	LOC_Os03g18550	iron	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed
MIT	Os03g0296800	LOC_Os03g18550	fertility	Identification and characterization of the major mitochondrial Fe transporter in rice	The knock-out of MIT resulted in a lethal phenotype, and in knock-down plants, several agronomic characteristics were compromised, such as plant height, average number of tillers, days to flower, fertility, and yield
MIT	Os03g0296800	LOC_Os03g18550	height	Identification and characterization of the major mitochondrial Fe transporter in rice	The knock-out of MIT resulted in a lethal phenotype, and in knock-down plants, several agronomic characteristics were compromised, such as plant height, average number of tillers, days to flower, fertility, and yield
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Here, we discuss the characterization of a rice vacuolar Fe transporter 2 (OsVIT2) T-DNA insertion line (osvit2) and report that the knockdown of OsVIT2 and mitochondrial Fe transporter (MIT) expression affects seed Fe localization
MIT	Os03g0296800	LOC_Os03g18550	flower	Identification and characterization of the major mitochondrial Fe transporter in rice	The knock-out of MIT resulted in a lethal phenotype, and in knock-down plants, several agronomic characteristics were compromised, such as plant height, average number of tillers, days to flower, fertility, and yield
MIT	Os03g0296800	LOC_Os03g18550	seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Here, we discuss the characterization of a rice vacuolar Fe transporter 2 (OsVIT2) T-DNA insertion line (osvit2) and report that the knockdown of OsVIT2 and mitochondrial Fe transporter (MIT) expression affects seed Fe localization
MIT	Os03g0296800	LOC_Os03g18550	seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Previously, we reported that the expression of OsVIT2 was higher in MIT knockdown (mit-2) plants, and in this study, the accumulation of Fe in mit-2 seeds decreased significantly
MIT	Os03g0296800	LOC_Os03g18550	seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Moreover, changes in the expression of OsVIT2 and MIT affect the concentration and localization of metals in brown rice as well as in polished rice seeds
MIT	Os03g0296800	LOC_Os03g18550	seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	Identification and characterization of the major mitochondrial Fe transporter in rice	Despite rapid progress in our understanding of Fe homeostasis in plants, Fe transport from the cytoplasm to mitochondria was, until recently, poorly understood
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	Identification and characterization of the major mitochondrial Fe transporter in rice	The screening of 3,993 mutant lines for symptoms of Fe deficiency resulted in the identification and characterization of a major mitochondrial Fe transporter (MIT) in rice
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	Identification and characterization of the major mitochondrial Fe transporter in rice	MIT was found to localize to mitochondria and to complement the growth of a yeast strain defective in mitochondrial Fe transport
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	Identification and characterization of the major mitochondrial Fe transporter in rice	Furthermore, the mitochondrial Fe concentration and the activity of the mitochondrial Fe-S enzyme aconitase were significantly reduced compared with wild-type plants
MIT	Os03g0296800	LOC_Os03g18550	mitochondria	Identification and characterization of the major mitochondrial Fe transporter in rice	Identification and characterization of the major mitochondrial Fe transporter in rice
MKB3	Os03g0733600	LOC_Os03g52320	leaf	Conserved functional control, but distinct regulation of cell proliferation in rice and Arabidopsis leaves revealed by comparative analysis ofGRF-INTERACTING FACTOR 1orthologs.	Expression analysis revealed thatMKB3is predominantly expressed on the epidermis of leaf primordia, which is different from the case ofAN3A protein movement assay demonstrated that MKB3 moves from anMKB3-expressing domain to a non-expressing domain, which is required for normal leaf development
MKB3	Os03g0733600	LOC_Os03g52320	leaf development	Conserved functional control, but distinct regulation of cell proliferation in rice and Arabidopsis leaves revealed by comparative analysis ofGRF-INTERACTING FACTOR 1orthologs.	Expression analysis revealed thatMKB3is predominantly expressed on the epidermis of leaf primordia, which is different from the case ofAN3A protein movement assay demonstrated that MKB3 moves from anMKB3-expressing domain to a non-expressing domain, which is required for normal leaf development
MKB3	Os03g0733600	LOC_Os03g52320	development	Conserved functional control, but distinct regulation of cell proliferation in rice and Arabidopsis leaves revealed by comparative analysis ofGRF-INTERACTING FACTOR 1orthologs.	Expression analysis revealed thatMKB3is predominantly expressed on the epidermis of leaf primordia, which is different from the case ofAN3A protein movement assay demonstrated that MKB3 moves from anMKB3-expressing domain to a non-expressing domain, which is required for normal leaf development
MKB3	Os03g0733600	LOC_Os03g52320	epidermis	Conserved functional control, but distinct regulation of cell proliferation in rice and Arabidopsis leaves revealed by comparative analysis ofGRF-INTERACTING FACTOR 1orthologs.	Expression analysis revealed thatMKB3is predominantly expressed on the epidermis of leaf primordia, which is different from the case ofAN3A protein movement assay demonstrated that MKB3 moves from anMKB3-expressing domain to a non-expressing domain, which is required for normal leaf development
MKRN	Os06g0318700	LOC_Os06g21390	seed	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	We isolated RNA from embryonic axes of rice seeds at various stages of imbibition and germination and studied the temporal expression profile of MKRN by RT-PCR
MKRN	Os06g0318700	LOC_Os06g21390	seed	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	The presence of MKRN transcripts in dry seeds, its early induction during germination and its continued spatiotemporal expression during early vegetative growth suggest that MKRN has an important role in germination, leaf and lateral root morphogenesis and overall development in rice
MKRN	Os06g0318700	LOC_Os06g21390	lateral root	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	This analysis revealed that MKRN transcripts were expressed in young plumules, lateral root primordia, leaf primordia, leaves and root tissues at many different stages of germination
MKRN	Os06g0318700	LOC_Os06g21390	lateral root	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	The presence of MKRN transcripts in dry seeds, its early induction during germination and its continued spatiotemporal expression during early vegetative growth suggest that MKRN has an important role in germination, leaf and lateral root morphogenesis and overall development in rice
MKRN	Os06g0318700	LOC_Os06g21390	vegetative	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	The presence of MKRN transcripts in dry seeds, its early induction during germination and its continued spatiotemporal expression during early vegetative growth suggest that MKRN has an important role in germination, leaf and lateral root morphogenesis and overall development in rice
MKRN	Os06g0318700	LOC_Os06g21390	leaf	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	This analysis revealed that MKRN transcripts were expressed in young plumules, lateral root primordia, leaf primordia, leaves and root tissues at many different stages of germination
MKRN	Os06g0318700	LOC_Os06g21390	leaf	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	The presence of MKRN transcripts in dry seeds, its early induction during germination and its continued spatiotemporal expression during early vegetative growth suggest that MKRN has an important role in germination, leaf and lateral root morphogenesis and overall development in rice
MKRN	Os06g0318700	LOC_Os06g21390	growth	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	The presence of MKRN transcripts in dry seeds, its early induction during germination and its continued spatiotemporal expression during early vegetative growth suggest that MKRN has an important role in germination, leaf and lateral root morphogenesis and overall development in rice
MKRN	Os06g0318700	LOC_Os06g21390	root	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	After 6days of germination, an organ-dependent expression pattern of MKRN was observed: highest in roots and moderate in leaves
MKRN	Os06g0318700	LOC_Os06g21390	root	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	This analysis revealed that MKRN transcripts were expressed in young plumules, lateral root primordia, leaf primordia, leaves and root tissues at many different stages of germination
MKRN	Os06g0318700	LOC_Os06g21390	root	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds	The presence of MKRN transcripts in dry seeds, its early induction during germination and its continued spatiotemporal expression during early vegetative growth suggest that MKRN has an important role in germination, leaf and lateral root morphogenesis and overall development in rice
MLO	Os06g0486300	LOC_Os06g29110	defense	Mlo, a modulator of plant defense and cell death, is a novel calmodulin-binding protein. Isolation and characterization of a rice Mlo homologue.	Mlo, a modulator of plant defense and cell death, is a novel calmodulin-binding protein. Isolation and characterization of a rice Mlo homologue.
MLO	Os06g0486300	LOC_Os06g29110	cell death	Mlo, a modulator of plant defense and cell death, is a novel calmodulin-binding protein. Isolation and characterization of a rice Mlo homologue.	Mlo, a modulator of plant defense and cell death, is a novel calmodulin-binding protein. Isolation and characterization of a rice Mlo homologue.
MMSDH	Os07g0188800	LOC_Os07g09060	gibberellin	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	MMSDH responded to auxin and gibberellin, but did not respond to brassinolide and cytokinin
MMSDH	Os07g0188800	LOC_Os07g09060	gibberellin	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	Furthermore, the amount of MMSDH in slr1, a constitutive gibberellin response mutant, was 2-fold that of wild type
MMSDH	Os07g0188800	LOC_Os07g09060	leaf	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	MMSDH was detected in cultured suspension cells, root and leaf sheath, but not in leaf blades
MMSDH	Os07g0188800	LOC_Os07g09060	sheath	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	MMSDH was detected in cultured suspension cells, root and leaf sheath, but not in leaf blades
MMSDH	Os07g0188800	LOC_Os07g09060	auxin	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	Of these seven, methylmalonate-semialdehyde dehydrogenase (MMSDH) was elevated by treatment with auxin alone
MMSDH	Os07g0188800	LOC_Os07g09060	auxin	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	MMSDH responded to auxin and gibberellin, but did not respond to brassinolide and cytokinin
MMSDH	Os07g0188800	LOC_Os07g09060	auxin	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	MMSDH mRNA and protein were stimulated in root formation induced by auxin and/or zinc over a 4-week period
MMSDH	Os07g0188800	LOC_Os07g09060	auxin	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	These results suggest that MMSDH may be necessary for root formation in rice induced by auxin and/or zinc
MMSDH	Os07g0188800	LOC_Os07g09060	cytokinin	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	MMSDH responded to auxin and gibberellin, but did not respond to brassinolide and cytokinin
MMSDH	Os07g0188800	LOC_Os07g09060	root	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	MMSDH was detected in cultured suspension cells, root and leaf sheath, but not in leaf blades
MMSDH	Os07g0188800	LOC_Os07g09060	root	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	MMSDH mRNA and protein were stimulated in root formation induced by auxin and/or zinc over a 4-week period
MMSDH	Os07g0188800	LOC_Os07g09060	root	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	These results suggest that MMSDH may be necessary for root formation in rice induced by auxin and/or zinc
MMSDH	Os07g0188800	LOC_Os07g09060	zinc	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	MMSDH mRNA and protein were stimulated in root formation induced by auxin and/or zinc over a 4-week period
MMSDH	Os07g0188800	LOC_Os07g09060	zinc	Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice	These results suggest that MMSDH may be necessary for root formation in rice induced by auxin and/or zinc
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	Control of tillering in rice	Here we report the isolation and characterization of MONOCULM 1 (MOC1), a gene that is important in the control of rice tillering
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	Control of tillering in rice	The moc1 mutant plants have only a main culm without any tillers owing to a defect in the formation of tiller buds
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	culm	Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes	A large genomic region surrounding the MONOCULM1 (MOC1) locus was chosen for study in 14 Oryza species, including 10 diploids and 4 allotetraploids
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	culm	Control of tillering in rice	Here we report the isolation and characterization of MONOCULM 1 (MOC1), a gene that is important in the control of rice tillering
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	culm	Control of tillering in rice	The moc1 mutant plants have only a main culm without any tillers owing to a defect in the formation of tiller buds
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	branching	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Ghd8 up-regulated MOC1, a key gene controlling tillering and branching; this increased the number of tillers, primary and secondary branches, thus producing 50% more grains per plant
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tillering	Identification and functional analysis of the MOC1 interacting protein 1	To further elucidate the molecular mechanism of MOC1 involved in the regulation of rice tillering, we performed a yeast-two-hybrid screening to identify MOC1 interacting proteins (MIPs)
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tillering	Identification and functional analysis of the MOC1 interacting protein 1	In-depth characterization of the context of MIP1 and MOC1 would further our understanding of molecular regulatory mechanisms of rice tillering
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	axillary meristem	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1	We show that TE coexpresses with MOC1 in the axil of leaves, where the APC/C(TE) complex mediates the degradation of MOC1 by the ubiquitin-26S proteasome pathway, and consequently downregulates the expression of the meristem identity gene Oryza sativa homeobox 1, thus repressing axillary meristem initiation and formation
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering	The MONOCULM 1 (MOC1) gene is the first identified key regulator controlling rice tiller number; however, the underlying mechanism remains to be elucidated
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	shoot	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1	Rice MONOCULM 1 (MOC1) and its orthologues LS/LAS (lateral suppressor in tomato and Arabidopsis) are key promoting factors of shoot branching and tillering in higher plants
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tillering	Control of tillering in rice	Here we report the isolation and characterization of MONOCULM 1 (MOC1), a gene that is important in the control of rice tillering
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	growth	Control of tillering in rice	MOC1 encodes a putative GRAS family nuclear protein that is expressed mainly in the axillary buds and functions to initiate axillary buds and to promote their outgrowth
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller number	Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering	The MONOCULM 1 (MOC1) gene is the first identified key regulator controlling rice tiller number; however, the underlying mechanism remains to be elucidated
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1	Rice MONOCULM 1 (MOC1) and its orthologues LS/LAS (lateral suppressor in tomato and Arabidopsis) are key promoting factors of shoot branching and tillering in higher plants
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	Identification and functional analysis of the MOC1 interacting protein 1	Our previous study has demonstrated that the MONOCULM1 (MOC1) gene is a key component that controls the formation of rice tiller buds
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	Identification and functional analysis of the MOC1 interacting protein 1	To further elucidate the molecular mechanism of MOC1 involved in the regulation of rice tillering, we performed a yeast-two-hybrid screening to identify MOC1 interacting proteins (MIPs)
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	Identification and functional analysis of the MOC1 interacting protein 1	In-depth characterization of the context of MIP1 and MOC1 would further our understanding of molecular regulatory mechanisms of rice tillering
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	culm	Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering	The MONOCULM 1 (MOC1) gene is the first identified key regulator controlling rice tiller number; however, the underlying mechanism remains to be elucidated
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	meristem	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1	We show that TE coexpresses with MOC1 in the axil of leaves, where the APC/C(TE) complex mediates the degradation of MOC1 by the ubiquitin-26S proteasome pathway, and consequently downregulates the expression of the meristem identity gene Oryza sativa homeobox 1, thus repressing axillary meristem initiation and formation
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Ghd8 up-regulated MOC1, a key gene controlling tillering and branching; this increased the number of tillers, primary and secondary branches, thus producing 50% more grains per plant
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	grain	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Ghd8 up-regulated MOC1, a key gene controlling tillering and branching; this increased the number of tillers, primary and secondary branches, thus producing 50% more grains per plant
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	culm	Identification and functional analysis of the MOC1 interacting protein 1	Our previous study has demonstrated that the MONOCULM1 (MOC1) gene is a key component that controls the formation of rice tiller buds
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tillering	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Ghd8 up-regulated MOC1, a key gene controlling tillering and branching; this increased the number of tillers, primary and secondary branches, thus producing 50% more grains per plant
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	branching	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1	Rice MONOCULM 1 (MOC1) and its orthologues LS/LAS (lateral suppressor in tomato and Arabidopsis) are key promoting factors of shoot branching and tillering in higher plants
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tillering	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1	Rice MONOCULM 1 (MOC1) and its orthologues LS/LAS (lateral suppressor in tomato and Arabidopsis) are key promoting factors of shoot branching and tillering in higher plants
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	culm	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1	Rice MONOCULM 1 (MOC1) and its orthologues LS/LAS (lateral suppressor in tomato and Arabidopsis) are key promoting factors of shoot branching and tillering in higher plants
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	spikelet	Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.	Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	meristem	Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.	Tomato Ls, Arabidopsis LAS and rice MOC1 are orthologous genes regulating axillary meristem initiation and outgrowth
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	spikelet number	Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.	Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	axillary meristem	Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.	Tomato Ls, Arabidopsis LAS and rice MOC1 are orthologous genes regulating axillary meristem initiation and outgrowth
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	Tiller Bud Formation Regulators MOC3 and MOC1 Cooperatively Promote Tiller Bud Outgrowth by Activating FON1 Expression in Rice.	Tiller Bud Formation Regulators MOC3 and MOC1 Cooperatively Promote Tiller Bud Outgrowth by Activating FON1 Expression in Rice.
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller	Tiller Bud Formation Regulators MOC3 and MOC1 Cooperatively Promote Tiller Bud Outgrowth by Activating FON1 Expression in Rice.	Collectively, these results shed lights on the joint transcriptional regulation by MOC1 and MOC3, and establish a new framework for the control of tiller bud formation and outgrowth
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	axillary meristem	Tiller Bud Formation Regulators MOC3 and MOC1 Cooperatively Promote Tiller Bud Outgrowth by Activating FON1 Expression in Rice.	Accordingly, FON1 is highly expressed at axillary meristems and shows remarkable decreased expression levels in moc1 and moc3 mutants
MOC1	Os06g0610300|Os06g0610350	LOC_Os06g40780	tiller bud outgrowth	Tiller Bud Formation Regulators MOC3 and MOC1 Cooperatively Promote Tiller Bud Outgrowth by Activating FON1 Expression in Rice.	Tiller Bud Formation Regulators MOC3 and MOC1 Cooperatively Promote Tiller Bud Outgrowth by Activating FON1 Expression in Rice.
MOC2|FBP1	Os01g0866400	LOC_Os01g64660	tiller	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase
MOC2|FBP1	Os01g0866400	LOC_Os01g64660	tiller number	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase
MOC2|FBP1	Os01g0866400	LOC_Os01g64660	dwarf	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	We characterized a rice monoculm mutant moc2, which showed significantly reduced tiller numbers, pale-green leaves, a reduced growth rate, and a consequent dwarf phenotype.
MOC2|FBP1	Os01g0866400	LOC_Os01g64660	growth rate	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	We characterized a rice monoculm mutant moc2, which showed significantly reduced tiller numbers, pale-green leaves, a reduced growth rate, and a consequent dwarf phenotype.
MOC2|FBP1	Os01g0866400	LOC_Os01g64660	growth	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	We characterized a rice monoculm mutant moc2, which showed significantly reduced tiller numbers, pale-green leaves, a reduced growth rate, and a consequent dwarf phenotype.
MOC2|FBP1	Os01g0866400	LOC_Os01g64660	leaf	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	We characterized a rice monoculm mutant moc2, which showed significantly reduced tiller numbers, pale-green leaves, a reduced growth rate, and a consequent dwarf phenotype.
MOC2|FBP1	Os01g0866400	LOC_Os01g64660	tiller bud outgrowth	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	Inconsistent change was observed in the expression of genes involved in tiller bud outgrowth, suggesting that the moc2 mutant has a defective function necessary for the tiller bud outgrowth.
MOC2|FBP1	Os01g0866400	LOC_Os01g64660	sucrose	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	The monoculm phenotype of the moc2 mutant supports the idea that sucrose supply may be an important cue to outgrow tiller buds.
MOC2|FBP1	Os01g0866400	LOC_Os01g64660	sucrose supply	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	The monoculm phenotype of the moc2 mutant supports the idea that sucrose supply may be an important cue to outgrow tiller buds.
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	tiller	MONOCULM 3, an Ortholog of WUSCHEL in Rice, Is Required for Tiller Bud Formation.	Morphological observation revealed that the formation of tiller buds was disrupted in moc3
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	cytokinin	MONOCULM 3, an Ortholog of WUSCHEL in Rice, Is Required for Tiller Bud Formation.	The expression of MOC3 was induced by cytokinins and defection of MOC3 affected the expression of several two-component cytokinin response regulators, OsRRs and ORRs
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	cytokinin response	MONOCULM 3, an Ortholog of WUSCHEL in Rice, Is Required for Tiller Bud Formation.	The expression of MOC3 was induced by cytokinins and defection of MOC3 affected the expression of several two-component cytokinin response regulators, OsRRs and ORRs
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	tiller	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	tiller	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	OsWUS has recently been shown to be a transcription factor gene critical for tiller development and fertility in rice
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	development	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	development	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	OsWUS has recently been shown to be a transcription factor gene critical for tiller development and fertility in rice
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	map-based cloning	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	Map-based cloning revealed that the mutant phenotypes were caused by a mutation in OsWUS Compared with the two previously reported null allelic mutants of OsWUS (tab1-1 and moc3-1), which could produce partial N-terminal peptides of OsWUS, the srt1 protein contained a deletion of only seven amino acids within the conserved homeobox domain of OsWUS
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	transcription factor	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	OsWUS has recently been shown to be a transcription factor gene critical for tiller development and fertility in rice
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	fertility	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	fertility	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	OsWUS has recently been shown to be a transcription factor gene critical for tiller development and fertility in rice
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	stem	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 Recently, we showed that a double mutant of FLORAL ORGAN NUMBER2 (FON2) and ABERRANT SPIKELET AND PANICLE1 (ASP1) led to a marked enlargement of the inflorescence meristem, and that the TAB1 function is not associated with massive stem cells in this meristem
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	stem	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 In addition, misexpression of TAB1 under the promoter of FON1 led to a slight reduction of the SAM size in wild type, suggesting that TAB1 is not a positive regulator of stem cells
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	spikelet	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 Recently, we showed that a double mutant of FLORAL ORGAN NUMBER2 (FON2) and ABERRANT SPIKELET AND PANICLE1 (ASP1) led to a marked enlargement of the inflorescence meristem, and that the TAB1 function is not associated with massive stem cells in this meristem
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	vegetative	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 In this paper, we confirmed that TAB1 is also unrelated to the enlargement of the SAM in the vegetative phase of the fon2 and fon2 asp1 mutants
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	floral	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 Recently, we showed that a double mutant of FLORAL ORGAN NUMBER2 (FON2) and ABERRANT SPIKELET AND PANICLE1 (ASP1) led to a marked enlargement of the inflorescence meristem, and that the TAB1 function is not associated with massive stem cells in this meristem
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	meristem	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 Recently, we showed that a double mutant of FLORAL ORGAN NUMBER2 (FON2) and ABERRANT SPIKELET AND PANICLE1 (ASP1) led to a marked enlargement of the inflorescence meristem, and that the TAB1 function is not associated with massive stem cells in this meristem
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	meristem	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 Taking together, TAB1 seems not to be involved in meristem maintenance, irrespective of the meristem type
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	inflorescence	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 Recently, we showed that a double mutant of FLORAL ORGAN NUMBER2 (FON2) and ABERRANT SPIKELET AND PANICLE1 (ASP1) led to a marked enlargement of the inflorescence meristem, and that the TAB1 function is not associated with massive stem cells in this meristem
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	floral organ	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 Recently, we showed that a double mutant of FLORAL ORGAN NUMBER2 (FON2) and ABERRANT SPIKELET AND PANICLE1 (ASP1) led to a marked enlargement of the inflorescence meristem, and that the TAB1 function is not associated with massive stem cells in this meristem
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	floral organ number	TILLERS ABSENT1, the WUSCHEL ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	 Recently, we showed that a double mutant of FLORAL ORGAN NUMBER2 (FON2) and ABERRANT SPIKELET AND PANICLE1 (ASP1) led to a marked enlargement of the inflorescence meristem, and that the TAB1 function is not associated with massive stem cells in this meristem
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	stem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 We revealed that stem cells were established at an early stage of axillary meristem development in wild type, but were not maintained in tab1
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	stem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 By contrast, the stem cell region and TAB1 expression domain were expanded in fon2, and FON2 overexpression inhibited axillary meristem formation
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	stem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 These results indicate that TAB1 is required to maintain stem cells during axillary meristem development, whereas FON2 negatively regulates stem cell fate by restricting TAB1 expression
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	development	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 We revealed that stem cells were established at an early stage of axillary meristem development in wild type, but were not maintained in tab1
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 We revealed that stem cells were established at an early stage of axillary meristem development in wild type, but were not maintained in tab1
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 By contrast, the stem cell region and TAB1 expression domain were expanded in fon2, and FON2 overexpression inhibited axillary meristem formation
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 These results indicate that TAB1 is required to maintain stem cells during axillary meristem development, whereas FON2 negatively regulates stem cell fate by restricting TAB1 expression
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	axillary meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 We revealed that stem cells were established at an early stage of axillary meristem development in wild type, but were not maintained in tab1
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	axillary meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 By contrast, the stem cell region and TAB1 expression domain were expanded in fon2, and FON2 overexpression inhibited axillary meristem formation
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	axillary meristem	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	 These results indicate that TAB1 is required to maintain stem cells during axillary meristem development, whereas FON2 negatively regulates stem cell fate by restricting TAB1 expression
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	growth	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	growth	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 Auxin response is enhanced in the dc1 mutant, and knocking out the auxin action-associated gene ABERRANT SPIKELET AND PANICLE 1 (ASP1) de-repressed growth of the tiller buds in the dc1 mutant, suggesting that OsWUS and ASP1 are both involved in outgrowth of the rice tiller bud
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	growth	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 Collectively, these findings reveal an important role of OsWUS in tiller bud growth by influencing apical dominance, and provide the basis for an improved understanding of tiller bud development in rice
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	auxin	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 Auxin response is enhanced in the dc1 mutant, and knocking out the auxin action-associated gene ABERRANT SPIKELET AND PANICLE 1 (ASP1) de-repressed growth of the tiller buds in the dc1 mutant, suggesting that OsWUS and ASP1 are both involved in outgrowth of the rice tiller bud
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	development	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 Collectively, these findings reveal an important role of OsWUS in tiller bud growth by influencing apical dominance, and provide the basis for an improved understanding of tiller bud development in rice
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	panicle	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 Auxin response is enhanced in the dc1 mutant, and knocking out the auxin action-associated gene ABERRANT SPIKELET AND PANICLE 1 (ASP1) de-repressed growth of the tiller buds in the dc1 mutant, suggesting that OsWUS and ASP1 are both involved in outgrowth of the rice tiller bud
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	spikelet	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 Auxin response is enhanced in the dc1 mutant, and knocking out the auxin action-associated gene ABERRANT SPIKELET AND PANICLE 1 (ASP1) de-repressed growth of the tiller buds in the dc1 mutant, suggesting that OsWUS and ASP1 are both involved in outgrowth of the rice tiller bud
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	tiller	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	tiller	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 Auxin response is enhanced in the dc1 mutant, and knocking out the auxin action-associated gene ABERRANT SPIKELET AND PANICLE 1 (ASP1) de-repressed growth of the tiller buds in the dc1 mutant, suggesting that OsWUS and ASP1 are both involved in outgrowth of the rice tiller bud
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	tiller	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 Collectively, these findings reveal an important role of OsWUS in tiller bud growth by influencing apical dominance, and provide the basis for an improved understanding of tiller bud development in rice
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	culm	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 In this study, we identified and functionally characterized a low-tillering mutant decreased culm number 1 (dc1) that resulted from loss-of-function of OsWUS
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	auxin response	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice	 Auxin response is enhanced in the dc1 mutant, and knocking out the auxin action-associated gene ABERRANT SPIKELET AND PANICLE 1 (ASP1) de-repressed growth of the tiller buds in the dc1 mutant, suggesting that OsWUS and ASP1 are both involved in outgrowth of the rice tiller bud
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	growth	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.	 Our results suggest that OsWUS is a precise regulatory element, its specific spatio-temporal expression pattern is critical for its function, and both loss-of-function and gain-of-function mutations lead to abnormal plant growth
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	development	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	development	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.	 OsWUS have distinct functions in meristem development with slightly tuned expression
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	panicle	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	meristem	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.	 OsWUS have distinct functions in meristem development with slightly tuned expression
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	plant growth	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.	 Our results suggest that OsWUS is a precise regulatory element, its specific spatio-temporal expression pattern is critical for its function, and both loss-of-function and gain-of-function mutations lead to abnormal plant growth
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	panicle development	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.
MOC3|OsWUS|TAB1|OsTAB1	Os04g0663600	LOC_Os04g56780	plant stature	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.
MODD	Os03g0214200	LOC_Os03g11550	resistance	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.
MODD	Os03g0214200	LOC_Os03g11550	drought	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.
MODD	Os03g0214200	LOC_Os03g11550	drought	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD was induced by ABA and drought stress, but the induction was much slower than that of OsbZIP46
MODD	Os03g0214200	LOC_Os03g11550	drought	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	In contrast to OsbZIP46, MODD negatively regulates ABA signaling and drought tolerance, and inhibits the expression of OsbZIP46 target genes
MODD	Os03g0214200	LOC_Os03g11550	ABA	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.
MODD	Os03g0214200	LOC_Os03g11550	ABA	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD was induced by ABA and drought stress, but the induction was much slower than that of OsbZIP46
MODD	Os03g0214200	LOC_Os03g11550	ABA	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	In contrast to OsbZIP46, MODD negatively regulates ABA signaling and drought tolerance, and inhibits the expression of OsbZIP46 target genes
MODD	Os03g0214200	LOC_Os03g11550	drought tolerance	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	In contrast to OsbZIP46, MODD negatively regulates ABA signaling and drought tolerance, and inhibits the expression of OsbZIP46 target genes
MODD	Os03g0214200	LOC_Os03g11550	drought resistance	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.
MODD	Os03g0214200	LOC_Os03g11550	Ubiquitin	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD promotes OsbZIP46 degradation via interaction with the U-box type ubiquitin E3 ligase OsPUB70
MODD	Os03g0214200	LOC_Os03g11550	ABA	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.
MODD	Os03g0214200	LOC_Os03g11550	ABA	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD was induced by ABA and drought stress, but the induction was much slower than that of OsbZIP46
MODD	Os03g0214200	LOC_Os03g11550	ABA	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	In contrast to OsbZIP46, MODD negatively regulates ABA signaling and drought tolerance, and inhibits the expression of OsbZIP46 target genes
MODD	Os03g0214200	LOC_Os03g11550	drought stress	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD was induced by ABA and drought stress, but the induction was much slower than that of OsbZIP46
MODD	Os03g0214200	LOC_Os03g11550	abscisic acid	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	Here, we report an OsbZIP46-interacting protein, MODD (Mediator of OsbZIP46 deactivation and degradation), which is homologous to the Arabidopsis thaliana ABSCISIC ACID-INSENSITIVE5 (ABI5)-binding protein AFP
MODD	Os03g0214200	LOC_Os03g11550	ubiquitin E3 ligase	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	MODD promotes OsbZIP46 degradation via interaction with the U-box type ubiquitin E3 ligase OsPUB70
MOF	Os04g0464966	LOC_Os04g39080	meiosis	MEIOTIC F-BOX Is Essential for Male Meiotic DNA Double Strand Break Repair in Rice.	The recruitment of Completion of meiosis I (COM1) and Radiation sensitive51C (RAD51C) to DSBs is severely compromised in mutant meiocytes, indicating that MOF is crucial for DSB end-processing and repair
MOF	Os04g0464966	LOC_Os04g39080	meiotic	MEIOTIC F-BOX Is Essential for Male Meiotic DNA Double Strand Break Repair in Rice.	Further analyses showed that MOF could physically interact with the rice SKP1-like Protein1 (OSK1), indicating that MOF functions as a component of the SCF E3 ligase to regulate meiotic progression in rice
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	spikelet	MORE FLORET 1 encodes a MYB transcription factor that regulates spikelet development in rice	The mof1 mutant has a delayed transition from the spikelet to the floral meristem, inducing the formation of extra lemma-like and palea-like organs
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	spikelet	MORE FLORET 1 encodes a MYB transcription factor that regulates spikelet development in rice	Taken together, our results reveal that MOF1 plays an important role in the regulation of organ identity and spikelet determinacy in rice
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	map-based cloning	MORE FLORET 1 encodes a MYB transcription factor that regulates spikelet development in rice	We used map-based cloning to identify the MOF1 locus and confirmed our identification by complementation and by generating new mof1 alleles using CRISPR-Cas9 gene editing
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	ethylene	MORE FLORET 1 encodes a MYB transcription factor that regulates spikelet development in rice	MOF1 encodes a MYB domain protein with the typical ethylene response factor-associated amphiphilic repression (EAR) motifs, is expressed in all organs and tissues, and has a strong repression effect
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	floral	MORE FLORET 1 encodes a MYB transcription factor that regulates spikelet development in rice	The mof1 mutant has a delayed transition from the spikelet to the floral meristem, inducing the formation of extra lemma-like and palea-like organs
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	floral meristem	MORE FLORET 1 encodes a MYB transcription factor that regulates spikelet development in rice	The mof1 mutant has a delayed transition from the spikelet to the floral meristem, inducing the formation of extra lemma-like and palea-like organs
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	nucleus	MORE FLORET 1 encodes a MYB transcription factor that regulates spikelet development in rice	MOF1 localizes to the nucleus and interacts with TOPLESS-RELATED PROTEINs (TPRs) to possibly repress the expression of downstream target genes
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	organ identity	MORE FLORET 1 encodes a MYB transcription factor that regulates spikelet development in rice	Taken together, our results reveal that MOF1 plays an important role in the regulation of organ identity and spikelet determinacy in rice
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	ethylene response	MORE FLORET 1 encodes a MYB transcription factor that regulates spikelet development in rice	MOF1 encodes a MYB domain protein with the typical ethylene response factor-associated amphiphilic repression (EAR) motifs, is expressed in all organs and tissues, and has a strong repression effect
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	development	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	Due to the increase in the number of floral organs and development of extra transformed palea/marginal region of the palea (mrp)-like organs, some mfs2 spikelets had a tendency to produce two florets
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	spikelet	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	These defects implied that the mfs2 mutation caused abnormal specification of palea identity and partial loss of spikelet determination
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	spikelet	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	The results indicate that MFS2 acts as a repressor that regulates floral organ identities and spikelet meristem determinacy in rice by forming a repression complex with rice TPL/TPR proteins
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	R protein	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	The results indicate that MFS2 acts as a repressor that regulates floral organ identities and spikelet meristem determinacy in rice by forming a repression complex with rice TPL/TPR proteins
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	floral	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	In the mfs2 mutant, specification of palea identity was severely disturbed and showed degradation or transformation into a lemma-like organ, and the number of all floral organs was increased to varying degrees
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	floral	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	Due to the increase in the number of floral organs and development of extra transformed palea/marginal region of the palea (mrp)-like organs, some mfs2 spikelets had a tendency to produce two florets
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	floral	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	The results indicate that MFS2 acts as a repressor that regulates floral organ identities and spikelet meristem determinacy in rice by forming a repression complex with rice TPL/TPR proteins
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	meristem	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	The results indicate that MFS2 acts as a repressor that regulates floral organ identities and spikelet meristem determinacy in rice by forming a repression complex with rice TPL/TPR proteins
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	spikelet meristem	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	The results indicate that MFS2 acts as a repressor that regulates floral organ identities and spikelet meristem determinacy in rice by forming a repression complex with rice TPL/TPR proteins
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	palea	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	In the mfs2 mutant, specification of palea identity was severely disturbed and showed degradation or transformation into a lemma-like organ, and the number of all floral organs was increased to varying degrees
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	palea	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	Due to the increase in the number of floral organs and development of extra transformed palea/marginal region of the palea (mrp)-like organs, some mfs2 spikelets had a tendency to produce two florets
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	palea	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	These defects implied that the mfs2 mutation caused abnormal specification of palea identity and partial loss of spikelet determination
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	floral organ	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	In the mfs2 mutant, specification of palea identity was severely disturbed and showed degradation or transformation into a lemma-like organ, and the number of all floral organs was increased to varying degrees
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	floral organ	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	Due to the increase in the number of floral organs and development of extra transformed palea/marginal region of the palea (mrp)-like organs, some mfs2 spikelets had a tendency to produce two florets
MOF1|MFS2	Os04g0566600	LOC_Os04g47890	floral organ	MULTI-FLORET SPIKELET 2, a MYB Transcription Factor, Determines Spikelet Meristem Fate and Floral Organ Identity in Rice	The results indicate that MFS2 acts as a repressor that regulates floral organ identities and spikelet meristem determinacy in rice by forming a repression complex with rice TPL/TPR proteins
MPR25	Os04g0602600	LOC_Os04g51350	mitochondria	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria	In this study, we investigated the molecular function in rice of the mitochondrial PPR-encoding gene MITOCHONDRIAL PPR25 (MPR25), which belongs to the E subgroup of the PPR family
MPR25	Os04g0602600	LOC_Os04g51350	mitochondria	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria	FLAG-tagged MPR25 accumulated in mitochondria but not in chloroplasts
MPR25	Os04g0602600	LOC_Os04g51350	mitochondria	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria	Direct sequencing revealed that the mpr25 mutant fails to edit a C-U RNA editing site at nucleotide 1580 of nad5, which encodes a subunit of complex I (NADH dehydrogenase) of the respiratory chain in mitochondria
MPR25	Os04g0602600	LOC_Os04g51350	mitochondria	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria	The mpr25 mutant may therefore provide new information on the coordinated interaction between mitochondria and chloroplasts
MPR25	Os04g0602600	LOC_Os04g51350	mitochondria	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria
MPR25	Os04g0602600	LOC_Os04g51350	chloroplast	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria	FLAG-tagged MPR25 accumulated in mitochondria but not in chloroplasts
MPR25	Os04g0602600	LOC_Os04g51350	chloroplast	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria	The mpr25 mutant may therefore provide new information on the coordinated interaction between mitochondria and chloroplasts
MPR25	Os04g0602600	LOC_Os04g51350	growth	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria	A Tos17 knockout mutant of MPR25 exhibited growth retardation and pale-green leaves with reduced chlorophyll content during the early stages of plant development
MPR25	Os04g0602600	LOC_Os04g51350	chloroplast	AEF1/MPR25 is implicated in RNA editing of plastid atpF and mitochondrial nad5 and also promotes atpF splicing in Arabidopsis and rice.	We also show that splicing of chloroplast atpF transcripts is affected in the rice mpr25 mutant
MRG701	Os04g0101300	LOC_Os04g01130	growth	MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice.	The similar phenotypes of 702Ri-1 and 702Ri-2 plants indicated that MRG702 knock down and knock down of both MRG701 and MRG702 had similar effects on growth and development.
MRG701	Os04g0101300	LOC_Os04g01130	development	MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice.	The similar phenotypes of 702Ri-1 and 702Ri-2 plants indicated that MRG702 knock down and knock down of both MRG701 and MRG702 had similar effects on growth and development.
MRG702	Os11g0545600	LOC_Os11g34300	BR	MRG702, a reader protein of H3K4me3 and H3K36me3, is involved in brassinosteroid-regulated growth and flowering time control in rice.	Therefore, the role of MRG702 in the BR pathway and in controlling flowering time in rice is to function as a reader protein to decipher methylation information
MRG702	Os11g0545600	LOC_Os11g34300	flowering time	MRG702, a reader protein of H3K4me3 and H3K36me3, is involved in brassinosteroid-regulated growth and flowering time control in rice.	Therefore, the role of MRG702 in the BR pathway and in controlling flowering time in rice is to function as a reader protein to decipher methylation information
MRG702	Os11g0545600	LOC_Os11g34300	R protein	MRG702, a reader protein of H3K4me3 and H3K36me3, is involved in brassinosteroid-regulated growth and flowering time control in rice.	Together, our results demonstrate that MRG702 acts as a reader protein of H3K4me3 and H3K36me3 and deciphers the H3K36 methylation information set by SDG725
MRG702	Os11g0545600	LOC_Os11g34300	R protein	MRG702, a reader protein of H3K4me3 and H3K36me3, is involved in brassinosteroid-regulated growth and flowering time control in rice.	Therefore, the role of MRG702 in the BR pathway and in controlling flowering time in rice is to function as a reader protein to decipher methylation information
MS5	Os09g0538500	LOC_Os09g36740	grain	Natural variation in rice ascorbate peroxidase gene APX9 is associated with a yield-enhancing QTL cluster	However, the MS5 mutants all exhibited high spikelet sterility, which was consistent with a role of MS5 in grain fertility
MSH2	Os05g0274200	LOC_Os05g19270	anti-recombination activity	Disruption in the DNA Mismatch Repair Gene MSH2 by CRISPR-Cas9 in Indica Rice Can Create Genetic Variability	MSH2 plays an essential role by forming a heterodimer with other proteins in the anti-recombination activity in eukaryotes by recognizing mismatches present in the heteroduplex recombination intermediates.
MTD1	Os02g0187400	LOC_Os02g09450	pollen	Genome-wide analyses of late pollen-preferred genes conserved in various rice cultivars and functional identification of a gene involved in the key processes of late pollen development	Of these, MTD1 was predominantly expressed in late pollen stage, which supported our supposition that it has a primary role in this developmental process, as revealed in the loss-of-function mutants (Fig. <U+200B>(Fig.6d6d).
MTP8.2	Os02g0775100	LOC_Os02g53490	transporter	The Tonoplast-Localized Transporter MTP8.2 Contributes to Manganese Detoxification in the Shoots and Roots of Oryza sativa L.	The Tonoplast-Localized Transporter MTP8.2 Contributes to Manganese Detoxification in the Shoots and Roots of Oryza sativa L.
MTP8.2	Os02g0775100	LOC_Os02g53490	manganese	The Tonoplast-Localized Transporter MTP8.2 Contributes to Manganese Detoxification in the Shoots and Roots of Oryza sativa L.	The Tonoplast-Localized Transporter MTP8.2 Contributes to Manganese Detoxification in the Shoots and Roots of Oryza sativa L.
mtRPL27a	Os04g0321500	LOC_Os04g25540	pollen	Mitochondrial gene in the nuclear genome induces reproductive barrier in rice	These results demonstrate that the duplicated genes encoding the mtRPL27 protein at S27 and S28 are involved in this pollen sterility, whereas mtRPL27a on S28-T65s is a loss-of-function allele caused by failure of expression (see below).
MYB1	Os01g0128000	LOC_Os01g03720	leaf	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	MYB1 was transcriptionally induced in leaf sheaths and old leaf blades
MYB1	Os01g0128000	LOC_Os01g03720	root	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Furthermore, MYB1 affected the elongation of the primary root in a Pi-dependent manner and lateral roots in a Pi-independent manner
MYB1	Os01g0128000	LOC_Os01g03720	root	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Moreover, gibberellic acid (GA)-triggered lateral root elongation was largely suppressed in wild-type plants under Pi starvation conditions, whereas this suppression was partially rescued in myb1 mutant lines, correlating with the up-regulation of a GA biosynthetic gene upon MYB1 mutation
MYB1	Os01g0128000	LOC_Os01g03720	root elongation	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Moreover, gibberellic acid (GA)-triggered lateral root elongation was largely suppressed in wild-type plants under Pi starvation conditions, whereas this suppression was partially rescued in myb1 mutant lines, correlating with the up-regulation of a GA biosynthetic gene upon MYB1 mutation
MYB1	Os01g0128000	LOC_Os01g03720	ga	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Moreover, gibberellic acid (GA)-triggered lateral root elongation was largely suppressed in wild-type plants under Pi starvation conditions, whereas this suppression was partially rescued in myb1 mutant lines, correlating with the up-regulation of a GA biosynthetic gene upon MYB1 mutation
MYB1	Os01g0128000	LOC_Os01g03720	ga	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Taken together, the findings of this study highlight the role of MYB1 as a regulator involved in both Pi starvation signaling and GA biosynthesis
MYB1	Os01g0128000	LOC_Os01g03720	GA	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Moreover, gibberellic acid (GA)-triggered lateral root elongation was largely suppressed in wild-type plants under Pi starvation conditions, whereas this suppression was partially rescued in myb1 mutant lines, correlating with the up-regulation of a GA biosynthetic gene upon MYB1 mutation
MYB1	Os01g0128000	LOC_Os01g03720	GA	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Taken together, the findings of this study highlight the role of MYB1 as a regulator involved in both Pi starvation signaling and GA biosynthesis
MYB1	Os01g0128000	LOC_Os01g03720	lateral root	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Furthermore, MYB1 affected the elongation of the primary root in a Pi-dependent manner and lateral roots in a Pi-independent manner
MYB1	Os01g0128000	LOC_Os01g03720	lateral root	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Moreover, gibberellic acid (GA)-triggered lateral root elongation was largely suppressed in wild-type plants under Pi starvation conditions, whereas this suppression was partially rescued in myb1 mutant lines, correlating with the up-regulation of a GA biosynthetic gene upon MYB1 mutation
MYB1	Os01g0128000	LOC_Os01g03720	GA biosynthetic	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Moreover, gibberellic acid (GA)-triggered lateral root elongation was largely suppressed in wild-type plants under Pi starvation conditions, whereas this suppression was partially rescued in myb1 mutant lines, correlating with the up-regulation of a GA biosynthetic gene upon MYB1 mutation
MYB1	Os01g0128000	LOC_Os01g03720	primary root	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Furthermore, MYB1 affected the elongation of the primary root in a Pi-dependent manner and lateral roots in a Pi-independent manner
MYB1	Os01g0128000	LOC_Os01g03720	Pi	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Mutation of MYB1 led to an increase in Pi uptake and accumulation, accompanied by altered expression of a subset of Pi transporters and several genes involved in Pi starvation signaling
MYB1	Os01g0128000	LOC_Os01g03720	Pi	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Moreover, gibberellic acid (GA)-triggered lateral root elongation was largely suppressed in wild-type plants under Pi starvation conditions, whereas this suppression was partially rescued in myb1 mutant lines, correlating with the up-regulation of a GA biosynthetic gene upon MYB1 mutation
MYB1	Os01g0128000	LOC_Os01g03720	Pi	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Taken together, the findings of this study highlight the role of MYB1 as a regulator involved in both Pi starvation signaling and GA biosynthesis
MYB1	Os01g0128000	LOC_Os01g03720	pi	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Mutation of MYB1 led to an increase in Pi uptake and accumulation, accompanied by altered expression of a subset of Pi transporters and several genes involved in Pi starvation signaling
MYB1	Os01g0128000	LOC_Os01g03720	pi	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Moreover, gibberellic acid (GA)-triggered lateral root elongation was largely suppressed in wild-type plants under Pi starvation conditions, whereas this suppression was partially rescued in myb1 mutant lines, correlating with the up-regulation of a GA biosynthetic gene upon MYB1 mutation
MYB1	Os01g0128000	LOC_Os01g03720	pi	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Taken together, the findings of this study highlight the role of MYB1 as a regulator involved in both Pi starvation signaling and GA biosynthesis
MYB1	Os01g0128000	LOC_Os01g03720	GA biosynthesis	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Taken together, the findings of this study highlight the role of MYB1 as a regulator involved in both Pi starvation signaling and GA biosynthesis
MYB1	Os01g0128000	LOC_Os01g03720	Pi uptake	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	Mutation of MYB1 led to an increase in Pi uptake and accumulation, accompanied by altered expression of a subset of Pi transporters and several genes involved in Pi starvation signaling
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	transcription factor	A Gibberellin-Mediated DELLA-NAC Signaling Cascade Regulates Cellulose Synthesis in Rice.	Multiple experiments demonstrated that transcription factors NAC29/31 and MYB61 are CESA regulators in rice; NAC29/31 directly regulates MYB61, which in turn activates CESA expression
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	nitrogen	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	grain	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice	The indica allele of MYB61 displays robust transcription resulting in higher NUE and increased grain yield at reduced N supply than that of japonica
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	domestication	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice	The variation at MYB61 has been selected during indica and japonica domestication
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	map-based cloning	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice	Here, via quantitative trait loci analysis and map-based cloning, we reveal that natural variation at the MYB61 locus leads to differences in N use and cellulose biogenesis between indica and japonica subspecies of rice
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	grain yield	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice	The indica allele of MYB61 displays robust transcription resulting in higher NUE and increased grain yield at reduced N supply than that of japonica
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	yield	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice	The indica allele of MYB61 displays robust transcription resulting in higher NUE and increased grain yield at reduced N supply than that of japonica
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	cellulose	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice	Here, via quantitative trait loci analysis and map-based cloning, we reveal that natural variation at the MYB61 locus leads to differences in N use and cellulose biogenesis between indica and japonica subspecies of rice
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	biomass	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice
MYB61|OsMYB61	Os01g0285300	LOC_Os01g18240	biomass production	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice
MYBS3|OsMYBS3	Os10g0561400	LOC_Os10g41200	transcription factor	A novel MYBS3-dependent pathway confers cold tolerance in rice	MYBS3 is a single DNA-binding repeat MYB transcription factor previously shown to mediate sugar signaling in rice
MYBS3|OsMYBS3	Os10g0561400	LOC_Os10g41200	seed	Three Novel MYB Proteins with One DNA Binding Repeat Mediate Sugar and Hormone Regulation of alpha-Amylase Gene Expression	Transient expression assays with barley half-seeds showed that OsMYBS1 and OsMYBS2 transactivate a promoter containing the TATCCA element when sugar is provided, whereas OsMYBS3 represses transcription of the same promoter under sugar starvation
MYBS3|OsMYBS3	Os10g0561400	LOC_Os10g41200	yield	A novel MYBS3-dependent pathway confers cold tolerance in rice	Transgenic rice constitutively overexpressing MYBS3 tolerated 4 degrees C for at least 1 week and exhibited no yield penalty in normal field conditions
MYBS3|OsMYBS3	Os10g0561400	LOC_Os10g41200	cold tolerance	A novel MYBS3-dependent pathway confers cold tolerance in rice	Gain- and loss-of-function analyses indicated that MYBS3 was sufficient and necessary for enhancing cold tolerance in rice
MYBS3|OsMYBS3	Os10g0561400	LOC_Os10g41200	cold tolerance	A novel MYBS3-dependent pathway confers cold tolerance in rice	A novel MYBS3-dependent pathway confers cold tolerance in rice
MYBS3|OsMYBS3	Os10g0561400	LOC_Os10g41200	abiotic stress	A novel MYBS3-dependent pathway confers cold tolerance in rice	Several genes activated by MYBS3 as well as inducible by cold have previously been implicated in various abiotic stress responses and/or tolerance in rice and other plant species
MYBS3|OsMYBS3	Os10g0561400	LOC_Os10g41200	cold stress	A novel MYBS3-dependent pathway confers cold tolerance in rice	DREB1 responded quickly and transiently while MYBS3 responded slowly to cold stress, which suggests that distinct pathways act sequentially and complementarily for adapting short- and long-term cold stress in rice
NAC028	Os02g0555300	LOC_Os02g34970	resistance	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 It was also found that the BZR1 ligand NAC028 positively regulated resistance to ShB
NAD3	None	None	R protein	Rice PPS1 encodes a DYW motif-containing pentatricopeptide repeat protein required for five consecutive RNA-editing sites of nad3 in mitochondria.	Here, we show that a novel DYW motif-containing PPR protein, PPS1, is associated with five conserved RNA-editing sites of nad3 located in close proximity to each other in mitochondria, all of which involve conversion from proline to leucine in rice
NADP-ME2|OsNADP-ME2	Os01g0723400	LOC_Os01g52500	growth	Expression of an NADP-malic enzyme gene in rice (Oryza sativa. L) is induced by environmental stresses; over-expression of the gene in Arabidopsis confers salt and osmotic stress tolerance	Transgenic Arabidopsis plants over-expressing NADP-ME2 grew well in 1/2 x MS medium with 100 mM NaCl or 4% mannitol, whereas growth of wild-type (WT) Arabidopsis seedlings was strongly inhibited
NADP-ME2|OsNADP-ME2	Os01g0723400	LOC_Os01g52500	seedling	Expression of an NADP-malic enzyme gene in rice (Oryza sativa. L) is induced by environmental stresses; over-expression of the gene in Arabidopsis confers salt and osmotic stress tolerance	Transgenic Arabidopsis plants over-expressing NADP-ME2 grew well in 1/2 x MS medium with 100 mM NaCl or 4% mannitol, whereas growth of wild-type (WT) Arabidopsis seedlings was strongly inhibited
NADP-ME2|OsNADP-ME2	Os01g0723400	LOC_Os01g52500	salt	Expression of an NADP-malic enzyme gene in rice (Oryza sativa. L) is induced by environmental stresses; over-expression of the gene in Arabidopsis confers salt and osmotic stress tolerance	These results indicate that rice NADP-ME2 responds to salts and osmotic stresses
NADP-ME2|OsNADP-ME2	Os01g0723400	LOC_Os01g52500	salt	Expression of an NADP-malic enzyme gene in rice (Oryza sativa. L) is induced by environmental stresses; over-expression of the gene in Arabidopsis confers salt and osmotic stress tolerance	These results suggest that NADP-ME2 has a role in enhancing tolerance of plants to salt and osmotic stress
NADP-ME2|OsNADP-ME2	Os01g0723400	LOC_Os01g52500	root	Expression of an NADP-malic enzyme gene in rice (Oryza sativa. L) is induced by environmental stresses; over-expression of the gene in Arabidopsis confers salt and osmotic stress tolerance	Expression of NADP-ME2 mRNA in roots was induced by stress from carbonates (NaHCO3 and Na2CO3, NaCl, and environmental pH changes
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	culm	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	Anatomical investigations revealed that the culms of nal1 also show a defective vascular system, in which the number and distribution pattern of vascular bundles are altered
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	growth	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	These results indicate that Nal1 affects polar auxin transport as well as the vascular patterns of rice plants and plays an important role in the control of lateral leaf growth
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	To understand the molecular mechanism governing plant leaf shape, we characterized a classic rice (Oryza sativa) dwarf mutant named narrow leaf1 (nal1), which exhibits a characteristic phenotype of narrow leaves
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	In accordance with reduced leaf blade width, leaves of nal1 contain a decreased number of longitudinal veins
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	These results indicate that Nal1 affects polar auxin transport as well as the vascular patterns of rice plants and plays an important role in the control of lateral leaf growth
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	vascular bundle	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	Anatomical investigations revealed that the culms of nal1 also show a defective vascular system, in which the number and distribution pattern of vascular bundles are altered
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	yield	NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars	NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf shape	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	To understand the molecular mechanism governing plant leaf shape, we characterized a classic rice (Oryza sativa) dwarf mutant named narrow leaf1 (nal1), which exhibits a characteristic phenotype of narrow leaves
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	auxin	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	We provide evidence showing that Nal1 is richly expressed in vascular tissues and that mutation of this gene leads to significantly reduced polar auxin transport capacity
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	auxin	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	These results indicate that Nal1 affects polar auxin transport as well as the vascular patterns of rice plants and plays an important role in the control of lateral leaf growth
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1	8 kb interval between the SSR loci RM17483 and RM17486, a region which also contains the gene NAL1 (Narrow leaf 1)
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1	The analysis of expression of other known genes involved in the determination of leaf width provided no evidence of their having any clear functional association with qFLW4/NAL1
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1	Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	dwarf	Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport	To understand the molecular mechanism governing plant leaf shape, we characterized a classic rice (Oryza sativa) dwarf mutant named narrow leaf1 (nal1), which exhibits a characteristic phenotype of narrow leaves
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars	Map-based cloning revealed that SPIKE was identical to NARROW LEAF1 (NAL1), which has been reported to control vein pattern in leaf
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	Previous studies have shown that NAL1 plays a role in regulating vein patterning and increasing grain yield in indica cultivars, but its role in leaf growth and development remains unknown
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	We demonstrated that NAL1 functions in the regulation of cell division as early as during leaf primordia initiation
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	These results suggest that NAL1 controls leaf width and plant height through its effects on cell division
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	growth	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	Previous studies have shown that NAL1 plays a role in regulating vein patterning and increasing grain yield in indica cultivars, but its role in leaf growth and development remains unknown
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	Previous studies have shown that NAL1 plays a role in regulating vein patterning and increasing grain yield in indica cultivars, but its role in leaf growth and development remains unknown
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	map-based cloning	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	Map-based cloning revealed that nal1-2 is a null allelic mutant of NAL1 since both the whole promoter and a 404-bp fragment in the first exon of NAL1 were deleted, and that a 6-bp fragment was deleted in the mutant nal1-3
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain yield	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	Previous studies have shown that NAL1 plays a role in regulating vein patterning and increasing grain yield in indica cultivars, but its role in leaf growth and development remains unknown
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	yield	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	Previous studies have shown that NAL1 plays a role in regulating vein patterning and increasing grain yield in indica cultivars, but its role in leaf growth and development remains unknown
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell division	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell division	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	We demonstrated that NAL1 functions in the regulation of cell division as early as during leaf primordia initiation
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell division	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	Heterogenous expression of NAL1 in fission yeast (Schizosaccharomyces pombe) further supported that NAL1 affects cell division
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell division	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	These results suggest that NAL1 controls leaf width and plant height through its effects on cell division
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	height	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	These results suggest that NAL1 controls leaf width and plant height through its effects on cell division
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell cycle	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	The altered transcript level of G1- and S-phase-specific genes suggested that NAL1 affects cell cycle regulation
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	development	Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division.	Previous studies have shown that NAL1 plays a role in regulating vein patterning and increasing grain yield in indica cultivars, but its role in leaf growth and development remains unknown
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	nitrogen	Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.	 This NAL1 allele also increases light capture and whole-leaf nitrogen content of the lower leaves and is associated with slower senescence in flag leaves
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.	 This NAL1 allele increases LNC and photosynthetic rate per leaf area in flag leaves but does not increase whole-leaf photosynthesis
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	senescence	Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.	 This NAL1 allele also increases light capture and whole-leaf nitrogen content of the lower leaves and is associated with slower senescence in flag leaves
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	photosynthesis	Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.	Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	photosynthesis	Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.	 This NAL1 allele increases LNC and photosynthetic rate per leaf area in flag leaves but does not increase whole-leaf photosynthesis
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	photosynthesis	Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.	 These results suggest that this NAL1 allele does not increase whole-leaf photosynthesis but plays a role in regulating spatial and temporal trade-offs among traits at the whole-plant level
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 Previous studies have shown that NAL1 modulates leaf size by affecting vein patterning and cell division; however, the underlying mechanism remains unclear
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 Here, we report that the nal1 mutant shows reduced size of the leaf abaxial epidermal cells and culm parenchyma cells compared with the wild type (WT), indicating that NAL1 also regulates cell expansion
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 These results indicate that, in addition to controlling cell division, NAL1 controls leaf width, at least partially, through its effect on cell expansion, probably via the acid growth mechanism
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	seedlings	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 To understand the molecular mechanism of the reduced cell size phenotype, leaves of 40-day-old nal1 mutant and WT seedlings were subjected to RNA-Seq analysis, which has identified 4277 differentially expressed genes (DEGs) between WT and the nal1 mutant
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	growth	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 A combination of RNA-Seq analysis and gene expression validation using RT-qPCR suggested that NAL1 is involved in the regulation of auxin-mediated acid growth in rice
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	growth	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 These results indicate that, in addition to controlling cell division, NAL1 controls leaf width, at least partially, through its effect on cell expansion, probably via the acid growth mechanism
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell division	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 Previous studies have shown that NAL1 modulates leaf size by affecting vein patterning and cell division; however, the underlying mechanism remains unclear
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell division	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 These results indicate that, in addition to controlling cell division, NAL1 controls leaf width, at least partially, through its effect on cell expansion, probably via the acid growth mechanism
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	culm	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 Here, we report that the nal1 mutant shows reduced size of the leaf abaxial epidermal cells and culm parenchyma cells compared with the wild type (WT), indicating that NAL1 also regulates cell expansion
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell wall	Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	 Gene ontology (GO) enrichment analysis revealed a large number of genes down-regulated in the nal1 mutant were involved in cell wall formation
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	panicle	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 Although the NAL1 and GNP1 genes regulating the rice GNP and grain yield have been cloned, their allelic diversity, functional differences in rice germplasms, and effects of their combination on GNP and grain yield remain unclear
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Our results indicated that the GNP1 and NAL1 exhibited obvious differentiation and their combinations can significantly increase the grain yield in geng rice cultivars
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain number	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 Although the NAL1 and GNP1 genes regulating the rice GNP and grain yield have been cloned, their allelic diversity, functional differences in rice germplasms, and effects of their combination on GNP and grain yield remain unclear
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Our results indicated that the GNP1 and NAL1 exhibited obvious differentiation and their combinations can significantly increase the grain yield in geng rice cultivars
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 Although the NAL1 and GNP1 genes regulating the rice GNP and grain yield have been cloned, their allelic diversity, functional differences in rice germplasms, and effects of their combination on GNP and grain yield remain unclear
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Our results indicated that the GNP1 and NAL1 exhibited obvious differentiation and their combinations can significantly increase the grain yield in geng rice cultivars
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 These observations provide insights into the molecular basis of the GNP and may be useful for rice breeding of high yield potential by pyramiding GNP1 and NAL1
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	breeding	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 These observations provide insights into the molecular basis of the GNP and may be useful for rice breeding of high yield potential by pyramiding GNP1 and NAL1
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	gibberellin	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 A comparative transcriptome analysis of the mutant and the wild-type rice revealed 263 differentially expressed genes involved in cell division, cell expansion, photosynthesis, reproduction, and gibberellin (GA) and brassinosteroids (BR) signaling pathways, suggesting the important regulatory role of nal1
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell division	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 A comparative transcriptome analysis of the mutant and the wild-type rice revealed 263 differentially expressed genes involved in cell division, cell expansion, photosynthesis, reproduction, and gibberellin (GA) and brassinosteroids (BR) signaling pathways, suggesting the important regulatory role of nal1
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	architecture	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 Our study indicated that nal1 controls plant architecture through the regulation of genes involved in the photosynthetic apparatus, cell cycle, and GA and BR signaling pathways
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	 ga 	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 Our study indicated that nal1 controls plant architecture through the regulation of genes involved in the photosynthetic apparatus, cell cycle, and GA and BR signaling pathways
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	cell cycle	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 Our study indicated that nal1 controls plant architecture through the regulation of genes involved in the photosynthetic apparatus, cell cycle, and GA and BR signaling pathways
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	 BR 	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 Our study indicated that nal1 controls plant architecture through the regulation of genes involved in the photosynthetic apparatus, cell cycle, and GA and BR signaling pathways
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	BR signaling	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 Our study indicated that nal1 controls plant architecture through the regulation of genes involved in the photosynthetic apparatus, cell cycle, and GA and BR signaling pathways
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	Gibberellin	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 A comparative transcriptome analysis of the mutant and the wild-type rice revealed 263 differentially expressed genes involved in cell division, cell expansion, photosynthesis, reproduction, and gibberellin (GA) and brassinosteroids (BR) signaling pathways, suggesting the important regulatory role of nal1
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	GA	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 Our study indicated that nal1 controls plant architecture through the regulation of genes involved in the photosynthetic apparatus, cell cycle, and GA and BR signaling pathways
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	plant architecture	A Novel Mutation of the NARROW LEAF 1 Gene Adversely Affects Plant Architecture in Rice ( Oryza sativa L.)	 Our study indicated that nal1 controls plant architecture through the regulation of genes involved in the photosynthetic apparatus, cell cycle, and GA and BR signaling pathways
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	 The observation that DNL-4 expression corresponded with that of NAL1 and NAL7 is consistent with the narrow leaf phenotype of the dnl-4 mutant
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 In this study, we systematically measured leaf photosynthetic parameters, leaf anatomical parameters, architectural parameters, and agronomic traits in indica cultivar 9311, in 9311 with the native NAL1 replaced by the Nipponbare NAL1 (9311-NIL), and in 9311 with the NAL1 fully mutated (9311-nal1)
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 RNA-seq analysis showed that NAL1 negatively regulates the expression of photosynthesis-related genes; NAL1 also influenced expression of many genes related to phytohormone signaling, as also shown by different leaf contents of 3-Indoleacetic acid, jasmonic acid, Gibberellin A3, and isopentenyladenine among these genotypes
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 This study shows both direct and indirect effects of NAL1 on leaf photosynthesis; furthermore, we show that a partially functional NAL1 allele helps maintain a balanced leaf photosynthesis and plant architecture for increased biomass and grain yield in the field
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 This study shows both direct and indirect effects of NAL1 on leaf photosynthesis; furthermore, we show that a partially functional NAL1 allele helps maintain a balanced leaf photosynthesis and plant architecture for increased biomass and grain yield in the field
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	photosynthesis	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 This study shows both direct and indirect effects of NAL1 on leaf photosynthesis; furthermore, we show that a partially functional NAL1 allele helps maintain a balanced leaf photosynthesis and plant architecture for increased biomass and grain yield in the field
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	gibberellin	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 RNA-seq analysis showed that NAL1 negatively regulates the expression of photosynthesis-related genes; NAL1 also influenced expression of many genes related to phytohormone signaling, as also shown by different leaf contents of 3-Indoleacetic acid, jasmonic acid, Gibberellin A3, and isopentenyladenine among these genotypes
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain yield	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 This study shows both direct and indirect effects of NAL1 on leaf photosynthesis; furthermore, we show that a partially functional NAL1 allele helps maintain a balanced leaf photosynthesis and plant architecture for increased biomass and grain yield in the field
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	yield	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 This study shows both direct and indirect effects of NAL1 on leaf photosynthesis; furthermore, we show that a partially functional NAL1 allele helps maintain a balanced leaf photosynthesis and plant architecture for increased biomass and grain yield in the field
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	architecture	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 This study shows both direct and indirect effects of NAL1 on leaf photosynthesis; furthermore, we show that a partially functional NAL1 allele helps maintain a balanced leaf photosynthesis and plant architecture for increased biomass and grain yield in the field
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	biomass	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 This study shows both direct and indirect effects of NAL1 on leaf photosynthesis; furthermore, we show that a partially functional NAL1 allele helps maintain a balanced leaf photosynthesis and plant architecture for increased biomass and grain yield in the field
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	jasmonic	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 RNA-seq analysis showed that NAL1 negatively regulates the expression of photosynthesis-related genes; NAL1 also influenced expression of many genes related to phytohormone signaling, as also shown by different leaf contents of 3-Indoleacetic acid, jasmonic acid, Gibberellin A3, and isopentenyladenine among these genotypes
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	jasmonic acid	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 RNA-seq analysis showed that NAL1 negatively regulates the expression of photosynthesis-related genes; NAL1 also influenced expression of many genes related to phytohormone signaling, as also shown by different leaf contents of 3-Indoleacetic acid, jasmonic acid, Gibberellin A3, and isopentenyladenine among these genotypes
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	Gibberellin	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 RNA-seq analysis showed that NAL1 negatively regulates the expression of photosynthesis-related genes; NAL1 also influenced expression of many genes related to phytohormone signaling, as also shown by different leaf contents of 3-Indoleacetic acid, jasmonic acid, Gibberellin A3, and isopentenyladenine among these genotypes
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	phytohormone	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 RNA-seq analysis showed that NAL1 negatively regulates the expression of photosynthesis-related genes; NAL1 also influenced expression of many genes related to phytohormone signaling, as also shown by different leaf contents of 3-Indoleacetic acid, jasmonic acid, Gibberellin A3, and isopentenyladenine among these genotypes
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	plant architecture	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	 This study shows both direct and indirect effects of NAL1 on leaf photosynthesis; furthermore, we show that a partially functional NAL1 allele helps maintain a balanced leaf photosynthesis and plant architecture for increased biomass and grain yield in the field
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 Both NIL-LVPA4LT and LVPA4 overexpression lines exhibited significantly increased LVPA, enlarged flag leaf size, and improved panicle type
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 The single-nucleotide variation in the third exon of LVPA4 was associated with LVPA, spikelet number, and leaf size throughout sequencing analysis in 386 panels
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	spikelet	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 The single-nucleotide variation in the third exon of LVPA4 was associated with LVPA, spikelet number, and leaf size throughout sequencing analysis in 386 panels
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 The results demonstrate that LVPA4 has synergistic effects on source capacity, sink size, and flow transport and plays crucial roles in rice productivity and grain quality, thus revealing the value of LVPA4 in rice breeding programs for improved varieties
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	panicle	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 Both NIL-LVPA4LT and LVPA4 overexpression lines exhibited significantly increased LVPA, enlarged flag leaf size, and improved panicle type
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	grain quality	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 The results demonstrate that LVPA4 has synergistic effects on source capacity, sink size, and flow transport and plays crucial roles in rice productivity and grain quality, thus revealing the value of LVPA4 in rice breeding programs for improved varieties
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	spikelet number	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 The single-nucleotide variation in the third exon of LVPA4 was associated with LVPA, spikelet number, and leaf size throughout sequencing analysis in 386 panels
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	breeding	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 The results demonstrate that LVPA4 has synergistic effects on source capacity, sink size, and flow transport and plays crucial roles in rice productivity and grain quality, thus revealing the value of LVPA4 in rice breeding programs for improved varieties
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf size	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 Both NIL-LVPA4LT and LVPA4 overexpression lines exhibited significantly increased LVPA, enlarged flag leaf size, and improved panicle type
NAL1|qFLW4|LVPA4	Os04g0615000	LOC_Os04g52479	leaf size	Large Vascular Bundle Phloem Area 4 enhances grain yield and quality in rice via source-sink-flow.	 The single-nucleotide variation in the third exon of LVPA4 was associated with LVPA, spikelet number, and leaf size throughout sequencing analysis in 386 panels
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Expression levels of several leaf development-associated genes were altered in nal2/3, and auxin transport-related genes were significantly changed, leading to pin mutant-like phenotypes such as more tillers and fewer lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	flower	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Map-based cloning revealed that NAL2 and NAL3 are paralogs that encode an identical OsWOX3A (OsNS) transcriptional activator, homologous to NARROW SHEATH1 (NS1) and NS2 in maize and PRESSED FLOWER in Arabidopsis
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	lateral root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	lateral root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Expression levels of several leaf development-associated genes were altered in nal2/3, and auxin transport-related genes were significantly changed, leading to pin mutant-like phenotypes such as more tillers and fewer lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	lateral root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	OsWOX3A is involved in organ development in rice, lateral-axis outgrowth and vascular patterning in leaves, lemma and palea morphogenesis in spikelets, and development of tillers and lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	lateral root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf shape	Two WUSCHEL-related homeobox genes, narrow leaf2 and narrow leaf3, control leaf width in rice	Thus, NAL2/3 can be used to modulate leaf shape and improve agronomic yield in crop plants
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	spikelet	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	OsWOX3A is involved in organ development in rice, lateral-axis outgrowth and vascular patterning in leaves, lemma and palea morphogenesis in spikelets, and development of tillers and lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	spikelet	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	sheath	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Map-based cloning revealed that NAL2 and NAL3 are paralogs that encode an identical OsWOX3A (OsNS) transcriptional activator, homologous to NARROW SHEATH1 (NS1) and NS2 in maize and PRESSED FLOWER in Arabidopsis
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	spikelet	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	palea	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	OsWOX3A is involved in organ development in rice, lateral-axis outgrowth and vascular patterning in leaves, lemma and palea morphogenesis in spikelets, and development of tillers and lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	grain	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	flower	A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development	Rice YAB3 is closely related to maize (Zea mays) ZmYAB14 and Arabidopsis (Arabidopsis thaliana) FILAMENTOUS FLOWER (FIL), whereas rice WOX3 is highly conserved with maize narrow sheath1 (NS1) and NS2 and Arabidopsis PRESSED FLOWER (PRS)
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	root development	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	tiller	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	tiller	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Expression levels of several leaf development-associated genes were altered in nal2/3, and auxin transport-related genes were significantly changed, leading to pin mutant-like phenotypes such as more tillers and fewer lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	growth	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	OsWOX3A is involved in organ development in rice, lateral-axis outgrowth and vascular patterning in leaves, lemma and palea morphogenesis in spikelets, and development of tillers and lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	OsWOX3A is involved in organ development in rice, lateral-axis outgrowth and vascular patterning in leaves, lemma and palea morphogenesis in spikelets, and development of tillers and lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	lemma	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	OsWOX3A is involved in organ development in rice, lateral-axis outgrowth and vascular patterning in leaves, lemma and palea morphogenesis in spikelets, and development of tillers and lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	sheath	A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development	Rice YAB3 is closely related to maize (Zea mays) ZmYAB14 and Arabidopsis (Arabidopsis thaliana) FILAMENTOUS FLOWER (FIL), whereas rice WOX3 is highly conserved with maize narrow sheath1 (NS1) and NS2 and Arabidopsis PRESSED FLOWER (PRS)
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	tiller	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	OsWOX3A is involved in organ development in rice, lateral-axis outgrowth and vascular patterning in leaves, lemma and palea morphogenesis in spikelets, and development of tillers and lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	tiller	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf development	A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development	Here, we report the characterization of functional relationship between rice (Oryza sativa) YAB3 and WOX3 in rice leaf development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf development	A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development	These data reveal a regulatory network involving YAB3, WOX3, and KNOX genes required for rice leaf development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf	Two WUSCHEL-related homeobox genes, narrow leaf2 and narrow leaf3, control leaf width in rice	The narrow-leaf phenotype of FL90 shows a two-factor recessive inheritance and is caused by the loss of function of two WUSCHEL-related homeobox genes, NAL2 and NAL3 (NAL2/3), which are duplicate genes orthologous to maize NS1 and NS2 and to Arabidopsis PRS
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf	Two WUSCHEL-related homeobox genes, narrow leaf2 and narrow leaf3, control leaf width in rice	The overexpression of NAL2/3 in transgenic rice plants results in wider leaves containing increased numbers of veins, suggesting that NAL2/3 expression regulates leaf width
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf	Two WUSCHEL-related homeobox genes, narrow leaf2 and narrow leaf3, control leaf width in rice	Thus, NAL2/3 can be used to modulate leaf shape and improve agronomic yield in crop plants
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf	A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development	Here, we report the characterization of functional relationship between rice (Oryza sativa) YAB3 and WOX3 in rice leaf development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf	A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development	These data reveal a regulatory network involving YAB3, WOX3, and KNOX genes required for rice leaf development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Expression levels of several leaf development-associated genes were altered in nal2/3, and auxin transport-related genes were significantly changed, leading to pin mutant-like phenotypes such as more tillers and fewer lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	yield	Two WUSCHEL-related homeobox genes, narrow leaf2 and narrow leaf3, control leaf width in rice	Thus, NAL2/3 can be used to modulate leaf shape and improve agronomic yield in crop plants
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	auxin	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Expression levels of several leaf development-associated genes were altered in nal2/3, and auxin transport-related genes were significantly changed, leading to pin mutant-like phenotypes such as more tillers and fewer lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf development	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Expression levels of several leaf development-associated genes were altered in nal2/3, and auxin transport-related genes were significantly changed, leading to pin mutant-like phenotypes such as more tillers and fewer lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	development	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	These data indicate that OsWOX3A is a GA-responsive gene and functions in the negative feedback regulation of the GA biosynthetic pathway for GA homeostasis to maintain the threshold levels of endogenous GA intermediates throughout development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	homeostasis	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	These data indicate that OsWOX3A is a GA-responsive gene and functions in the negative feedback regulation of the GA biosynthetic pathway for GA homeostasis to maintain the threshold levels of endogenous GA intermediates throughout development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	ga	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	Exogenous GA3 treatment fully rescued the developmental defects of OsWOX3A-OX plants, suggesting that constitutive overexpression of OsWOX3A downregulates GA biosynthesis
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	ga	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	OsWOX3A expression is drastically and temporarily upregulated by GA3 and downregulated by paclobutrazol, a blocker of GA biosynthesis
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	ga	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	These data indicate that OsWOX3A is a GA-responsive gene and functions in the negative feedback regulation of the GA biosynthetic pathway for GA homeostasis to maintain the threshold levels of endogenous GA intermediates throughout development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	height	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	Among the rice (Oryza sativa) WOX proteins, a loss of OsWOX3A function in narrow leaf2 (nal2) nal3 double mutants (termed nal2/3) causes pleiotropic effects, such as narrow and curly leaves, opened spikelets, narrow grains, more tillers, and fewer lateral roots, but almost normal plant height
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	plant height	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	Among the rice (Oryza sativa) WOX proteins, a loss of OsWOX3A function in narrow leaf2 (nal2) nal3 double mutants (termed nal2/3) causes pleiotropic effects, such as narrow and curly leaves, opened spikelets, narrow grains, more tillers, and fewer lateral roots, but almost normal plant height
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	GA	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	Exogenous GA3 treatment fully rescued the developmental defects of OsWOX3A-OX plants, suggesting that constitutive overexpression of OsWOX3A downregulates GA biosynthesis
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	GA	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	OsWOX3A expression is drastically and temporarily upregulated by GA3 and downregulated by paclobutrazol, a blocker of GA biosynthesis
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	GA	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	These data indicate that OsWOX3A is a GA-responsive gene and functions in the negative feedback regulation of the GA biosynthetic pathway for GA homeostasis to maintain the threshold levels of endogenous GA intermediates throughout development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	lateral root	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	Among the rice (Oryza sativa) WOX proteins, a loss of OsWOX3A function in narrow leaf2 (nal2) nal3 double mutants (termed nal2/3) causes pleiotropic effects, such as narrow and curly leaves, opened spikelets, narrow grains, more tillers, and fewer lateral roots, but almost normal plant height
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	GA biosynthetic	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	These data indicate that OsWOX3A is a GA-responsive gene and functions in the negative feedback regulation of the GA biosynthetic pathway for GA homeostasis to maintain the threshold levels of endogenous GA intermediates throughout development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	GA biosynthesis	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	Exogenous GA3 treatment fully rescued the developmental defects of OsWOX3A-OX plants, suggesting that constitutive overexpression of OsWOX3A downregulates GA biosynthesis
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	GA biosynthesis	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	OsWOX3A expression is drastically and temporarily upregulated by GA3 and downregulated by paclobutrazol, a blocker of GA biosynthesis
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	root	Regulatory role of the OsWOX3A transcription factor in rice root development.	Regulatory role of the OsWOX3A transcription factor in rice root development.
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	root	Regulatory role of the OsWOX3A transcription factor in rice root development.	These findings indicate that OsWOX3A may be involved in modulation of GA-auxin crosstalk in rice root development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	development	Regulatory role of the OsWOX3A transcription factor in rice root development.	These findings indicate that OsWOX3A may be involved in modulation of GA-auxin crosstalk in rice root development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	transcription factor	Regulatory role of the OsWOX3A transcription factor in rice root development.	Regulatory role of the OsWOX3A transcription factor in rice root development.
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	root development	Regulatory role of the OsWOX3A transcription factor in rice root development.	Regulatory role of the OsWOX3A transcription factor in rice root development.
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	root development	Regulatory role of the OsWOX3A transcription factor in rice root development.	These findings indicate that OsWOX3A may be involved in modulation of GA-auxin crosstalk in rice root development
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	ga	Regulatory role of the OsWOX3A transcription factor in rice root development.	In a recent study, we demonstrated that OsWOX3A directly binds to the promoter of the KAO gene, which encodes ent-kaurenoic acid oxidase, an enzyme involved in GA biosynthesis, and represses KAO expression
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	GA	Regulatory role of the OsWOX3A transcription factor in rice root development.	In a recent study, we demonstrated that OsWOX3A directly binds to the promoter of the KAO gene, which encodes ent-kaurenoic acid oxidase, an enzyme involved in GA biosynthesis, and represses KAO expression
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	lateral root	Regulatory role of the OsWOX3A transcription factor in rice root development.	Interestingly, we observed that OsWOX3A overexpression causes not only severe dwarfism, but also an increase in the number of lateral roots
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	GA biosynthesis	Regulatory role of the OsWOX3A transcription factor in rice root development.	In a recent study, we demonstrated that OsWOX3A directly binds to the promoter of the KAO gene, which encodes ent-kaurenoic acid oxidase, an enzyme involved in GA biosynthesis, and represses KAO expression
NAL2|OsWOX3A|WOX3	Os11g0102100	LOC_Os11g01130	leaf	Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice	Transformation with modified OsARF11, OsARF16 and OsWOX3A genomic DNA lacking uORFs rescued the narrow leaf phenotype of nal21 to a better extent than transformation with their native genomic DNA, implying that RPS3A could regulate translation of ARFs and WOX3A through uORFs
NAL21	Os03g0200500	LOC_Os03g10340	leaf	Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice	Microscopic observation revealed defects in the vascular system and reduced epidermal cell size and number in the nal21 leaf blade
NAL21	Os03g0200500	LOC_Os03g10340	leaf	Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice	Transformation with modified OsARF11, OsARF16 and OsWOX3A genomic DNA lacking uORFs rescued the narrow leaf phenotype of nal21 to a better extent than transformation with their native genomic DNA, implying that RPS3A could regulate translation of ARFs and WOX3A through uORFs
NAL21	Os03g0200500	LOC_Os03g10340	auxin	Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice	The nal21 mutant showed aberrant auxin responses in which multiple auxin response factors (ARFs) harboring upstream open reading frames (uORFs) in their 5'-untranslated region (5'-UTR) were repressed at the translational level
NAL21	Os03g0200500	LOC_Os03g10340	resistance	Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice	Ribosome-targeting antibiotics resistance assay and ribosome profiling showed a significant reduction in the free 40S ribosome subunit in the nal21 mutant
NAL21	Os03g0200500	LOC_Os03g10340	map-based cloning	Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice	Map-based cloning revealed that NAL21 encodes a ribosomal small subunit protein RPS3A
NAL21	Os03g0200500	LOC_Os03g10340	auxin response	Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice	The nal21 mutant showed aberrant auxin responses in which multiple auxin response factors (ARFs) harboring upstream open reading frames (uORFs) in their 5'-untranslated region (5'-UTR) were repressed at the translational level
NAL3	Os12g0101600	LOC_Os12g01120	spikelet	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL3	Os12g0101600	LOC_Os12g01120	leaf	Two WUSCHEL-related homeobox genes, narrow leaf2 and narrow leaf3, control leaf width in rice	The narrow-leaf phenotype of FL90 shows a two-factor recessive inheritance and is caused by the loss of function of two WUSCHEL-related homeobox genes, NAL2 and NAL3 (NAL2/3), which are duplicate genes orthologous to maize NS1 and NS2 and to Arabidopsis PRS
NAL3	Os12g0101600	LOC_Os12g01120	sheath	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Map-based cloning revealed that NAL2 and NAL3 are paralogs that encode an identical OsWOX3A (OsNS) transcriptional activator, homologous to NARROW SHEATH1 (NS1) and NS2 in maize and PRESSED FLOWER in Arabidopsis
NAL3	Os12g0101600	LOC_Os12g01120	flower	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	Map-based cloning revealed that NAL2 and NAL3 are paralogs that encode an identical OsWOX3A (OsNS) transcriptional activator, homologous to NARROW SHEATH1 (NS1) and NS2 in maize and PRESSED FLOWER in Arabidopsis
NAL3	Os12g0101600	LOC_Os12g01120	root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL3	Os12g0101600	LOC_Os12g01120	leaf	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL3	Os12g0101600	LOC_Os12g01120	lateral root	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL3	Os12g0101600	LOC_Os12g01120	tiller	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL3	Os12g0101600	LOC_Os12g01120	grain	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development	In order to understand the molecular genetic mechanisms of rice (Oryza sativa) organ development, we studied the narrow leaf2 narrow leaf3 (nal2 nal3; hereafter nal2/3) double mutant, which produces narrow-curly leaves, more tillers, fewer lateral roots, opened spikelets and narrow-thin grains
NAL8	Os07g0262200	LOC_Os07g15880	leaf	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.
NAL8	Os07g0262200	LOC_Os07g15880	leaf	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	Our findings provide new insights into the way that NAL8 functions as a molecular chaperone in regulating plant leaf morphology and spikelet number through its effects on mitochondria and chloroplasts associated with cell division
NAL8	Os07g0262200	LOC_Os07g15880	auxin	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	In addition, the auxin levels in nal8 mutants are higher than in TQ, while the cytokinin levels are lower than in TQ
NAL8	Os07g0262200	LOC_Os07g15880	spikelet	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.
NAL8	Os07g0262200	LOC_Os07g15880	spikelet	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	Our findings provide new insights into the way that NAL8 functions as a molecular chaperone in regulating plant leaf morphology and spikelet number through its effects on mitochondria and chloroplasts associated with cell division
NAL8	Os07g0262200	LOC_Os07g15880	development	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.
NAL8	Os07g0262200	LOC_Os07g15880	mitochondria	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.
NAL8	Os07g0262200	LOC_Os07g15880	mitochondria	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	Moreover, RNA-sequencing and proteomics analysis shows that NAL8 is involved in multiple hormone signaling pathways as well as photosynthesis in chloroplasts and respiration in mitochondria
NAL8	Os07g0262200	LOC_Os07g15880	mitochondria	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	Our findings provide new insights into the way that NAL8 functions as a molecular chaperone in regulating plant leaf morphology and spikelet number through its effects on mitochondria and chloroplasts associated with cell division
NAL8	Os07g0262200	LOC_Os07g15880	photosynthesis	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	Moreover, RNA-sequencing and proteomics analysis shows that NAL8 is involved in multiple hormone signaling pathways as well as photosynthesis in chloroplasts and respiration in mitochondria
NAL8	Os07g0262200	LOC_Os07g15880	cell division	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	Mutation of NAL8 causes a reduction in the number of plastoglobules and shrunken thylakoids in chloroplasts, resulting in reduced cell division
NAL8	Os07g0262200	LOC_Os07g15880	cell division	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	Our findings provide new insights into the way that NAL8 functions as a molecular chaperone in regulating plant leaf morphology and spikelet number through its effects on mitochondria and chloroplasts associated with cell division
NAL8	Os07g0262200	LOC_Os07g15880	cytokinin	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	In addition, the auxin levels in nal8 mutants are higher than in TQ, while the cytokinin levels are lower than in TQ
NAL8	Os07g0262200	LOC_Os07g15880	spikelet number	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	Our findings provide new insights into the way that NAL8 functions as a molecular chaperone in regulating plant leaf morphology and spikelet number through its effects on mitochondria and chloroplasts associated with cell division
NAL8	Os07g0262200	LOC_Os07g15880	spikelet development	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.
NBIP1	Os01g0755700	LOC_Os01g55110	protoplasts	Nitrate-NRT1.1B-SPX4 cascade integrates nitrogen and phosphorus signalling networks in plants	Moreover, NBIP1 significantly promoted the degradation of eGFP CSPX4 in protoplasts of wild-type plants (Fig. 6f), whereas this process was repressed in protoplasts of the nrt1.1b mutant (Supplementary Fig. 10).
NBS-Str1	Os02g0191000	LOC_Os02g09790	vascular bundle	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice.	NBS-Str1 URS is induced in root tissue, preferentially in vascular bundle, during 3 and 24 h of desiccation stress condition in transgenic 7-day-old rice seedling
NBS-Str1	Os02g0191000	LOC_Os02g09790	root	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice.	NBS-Str1 URS is induced in root tissue, preferentially in vascular bundle, during 3 and 24 h of desiccation stress condition in transgenic 7-day-old rice seedling
NBS-Str1	Os02g0191000	LOC_Os02g09790	seedling	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice.	NBS-Str1 URS is induced in root tissue, preferentially in vascular bundle, during 3 and 24 h of desiccation stress condition in transgenic 7-day-old rice seedling
NBS-Str1	Os02g0191000	LOC_Os02g09790	salt	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice.	NBS-Str1 and BLEC-Str8 genes have been identified, by analysing the transcriptome data of cold, salt and desiccation stress-treated 7-day-old rice (Oryza sativa L
NBS-Str1	Os02g0191000	LOC_Os02g09790	stress	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice.	NBS-Str1 URS is induced in root tissue, preferentially in vascular bundle, during 3 and 24 h of desiccation stress condition in transgenic 7-day-old rice seedling
NBS-Str1	Os02g0191000	LOC_Os02g09790	manganese	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice.	NBS-Str1 and BLEC-Str8 URSs are inducible by heavy metal, copper and manganese
NBS-Str1	Os02g0191000	LOC_Os02g09790	copper	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice.	NBS-Str1 and BLEC-Str8 URSs are inducible by heavy metal, copper and manganese
NBS8R	Os08g0542200	LOC_Os08g42930	resistance	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	Here, we report the map-based cloning of a QTL, in which the NBS8R gene confers quantitative resistance to Xoo
NBS8R	Os08g0542200	LOC_Os08g42930	resistance	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	The interaction between NBS8R and XopQ-inducible Osa-miR1876 is partially in keeping with the zigzag model, revealing that quantitative genes may also follow this model to control the innate immune response or basal disease resistance, and may prove valuable in utilizing the existing landraces that harbor the NBS8R gene but with no Osa-miR1876 binding site in rice breeding for bacterial blight resistance
NBS8R	Os08g0542200	LOC_Os08g42930	disease	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	The interaction between NBS8R and XopQ-inducible Osa-miR1876 is partially in keeping with the zigzag model, revealing that quantitative genes may also follow this model to control the innate immune response or basal disease resistance, and may prove valuable in utilizing the existing landraces that harbor the NBS8R gene but with no Osa-miR1876 binding site in rice breeding for bacterial blight resistance
NBS8R	Os08g0542200	LOC_Os08g42930	disease resistance	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	The interaction between NBS8R and XopQ-inducible Osa-miR1876 is partially in keeping with the zigzag model, revealing that quantitative genes may also follow this model to control the innate immune response or basal disease resistance, and may prove valuable in utilizing the existing landraces that harbor the NBS8R gene but with no Osa-miR1876 binding site in rice breeding for bacterial blight resistance
NBS8R	Os08g0542200	LOC_Os08g42930	blight	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	The interaction between NBS8R and XopQ-inducible Osa-miR1876 is partially in keeping with the zigzag model, revealing that quantitative genes may also follow this model to control the innate immune response or basal disease resistance, and may prove valuable in utilizing the existing landraces that harbor the NBS8R gene but with no Osa-miR1876 binding site in rice breeding for bacterial blight resistance
NBS8R	Os08g0542200	LOC_Os08g42930	bacterial blight	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	The interaction between NBS8R and XopQ-inducible Osa-miR1876 is partially in keeping with the zigzag model, revealing that quantitative genes may also follow this model to control the innate immune response or basal disease resistance, and may prove valuable in utilizing the existing landraces that harbor the NBS8R gene but with no Osa-miR1876 binding site in rice breeding for bacterial blight resistance
NBS8R	Os08g0542200	LOC_Os08g42930	map-based cloning	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	Here, we report the map-based cloning of a QTL, in which the NBS8R gene confers quantitative resistance to Xoo
NBS8R	Os08g0542200	LOC_Os08g42930	immunity	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	NBS8R encodes an NB-ARC protein, which is involved in pathogen/microbe-associated molecular pattern-triggered immunity and whose expression is regulated by non-TAL effector XopQ-inducible Osa-miR1876 through DNA methylation
NBS8R	Os08g0542200	LOC_Os08g42930	breeding	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	The interaction between NBS8R and XopQ-inducible Osa-miR1876 is partially in keeping with the zigzag model, revealing that quantitative genes may also follow this model to control the innate immune response or basal disease resistance, and may prove valuable in utilizing the existing landraces that harbor the NBS8R gene but with no Osa-miR1876 binding site in rice breeding for bacterial blight resistance
NBS8R	Os08g0542200	LOC_Os08g42930	immune response	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA	The interaction between NBS8R and XopQ-inducible Osa-miR1876 is partially in keeping with the zigzag model, revealing that quantitative genes may also follow this model to control the innate immune response or basal disease resistance, and may prove valuable in utilizing the existing landraces that harbor the NBS8R gene but with no Osa-miR1876 binding site in rice breeding for bacterial blight resistance
NF-YC12|OsNF-YC12	Os10g0191900	LOC_Os10g11580	grain quality	NF-YB1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.).	NF-YB1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.).
NF-YC12|OsNF-YC12	Os10g0191900	LOC_Os10g11580	grain quality	NF-YB1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.).	NF-YC12 and bHLH144 maintain NF-YB1 stability from the degradation mediated by ubiquitin/26S proteasome, while NF-YB1 directly binds to the 'G-box' domain of Wx promoter and activates Wx transcription, hence to regulate rice grain quality.
NF-YC12|OsNF-YC12	Os10g0191900	LOC_Os10g11580	grain weight	NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice.	Knockout of NF-YC12 significantly decreased grain weight as well as altering starch and protein accumulation and starch granule formation.
NF-YC12|OsNF-YC12	Os10g0191900	LOC_Os10g11580	endosperm development	NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice.	This study demonstrates a transcriptional regulatory network involving NF-YC12, which coordinates multiple pathways to regulate endosperm development and the accumulation of storage substances in rice seeds.
NH2	Os01g0767900	LOC_Os01g56200	blight	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	In our study, three rice homologous genes, OsNPR1/NH1, OsNPR2/NH2 and OsNPR3, were found to be induced by rice bacterial blight Xanthomonas oryzae pv
NH2	Os01g0767900	LOC_Os01g56200	bacterial blight	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	In our study, three rice homologous genes, OsNPR1/NH1, OsNPR2/NH2 and OsNPR3, were found to be induced by rice bacterial blight Xanthomonas oryzae pv
NH3|OsNPR3	Os03g0667100	LOC_Os03g46440	growth	Enhanced disease resistance and hypersensitivity to BTH by introduction of an NH1/OsNPR1 paralog	Bacterial growth curve analysis indicates that bacterial population levels are reduced 10-fold in nNT-NH3 lines compared to control rice lines
NIGT1	Os02g0325600	LOC_Os02g22020	nitrogen	A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice	Furthermore, the chlorophyll content that could be a marker of nitrogen utilization was found to be decreased in NIGT1 overexpressors of rice grown with nitrate medium but not with ammonium medium
NIGT1	Os02g0325600	LOC_Os02g22020	nitrogen	A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice	Thus, we propose NIGT1 as a nitrate-inducible and autorepressible transcriptional repressor that may play a role in the nitrogen response in rice
NIGT1	Os02g0325600	LOC_Os02g22020	nitrate	A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice	Here we show that the supply of nitrate but not ammonium immediately induces the expression of a transcriptional repressor gene in rice, designated NIGT1 (Nitrate-Inducible, GARP-type Transcriptional Repressor 1)
NIGT1	Os02g0325600	LOC_Os02g22020	nitrate	A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice	Consistently, nitrate-induced NIGT1 expression was found to be down-regulated after a transient peak during nitrate treatment, and the nitrate-induced expression of NIGT1 decreased in transgenic rice plants in which this gene was constitutively overexpressed
NIGT1	Os02g0325600	LOC_Os02g22020	nitrate	A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice	Furthermore, the chlorophyll content that could be a marker of nitrogen utilization was found to be decreased in NIGT1 overexpressors of rice grown with nitrate medium but not with ammonium medium
NIGT1	Os02g0325600	LOC_Os02g22020	nitrate	A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice	Thus, we propose NIGT1 as a nitrate-inducible and autorepressible transcriptional repressor that may play a role in the nitrogen response in rice
NIGT1	Os02g0325600	LOC_Os02g22020	nitrate	A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice	Taken together with the fact that the NIGT1-binding sites are conserved in promoter sequences of Arabidopsis NIGT1 homologs, our findings imply the presence of a time-dependent complex system for nitrate-responsive transcriptional regulation that is conserved in both monocots and dicots
NIGT1	Os02g0325600	LOC_Os02g22020	transcription factor	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Here we show that a Pi-starvation induced transcription factor NIGT1 (NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1) controls plant growth and prevents a hyperresponse to Pi-starvation by directly repressing the expression of growth-related and Pi-signaling genes to achieve a balance between growth and response under a varying Pi environment
NIGT1	Os02g0325600	LOC_Os02g22020	growth	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.
NIGT1	Os02g0325600	LOC_Os02g22020	growth	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Here we show that a Pi-starvation induced transcription factor NIGT1 (NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1) controls plant growth and prevents a hyperresponse to Pi-starvation by directly repressing the expression of growth-related and Pi-signaling genes to achieve a balance between growth and response under a varying Pi environment
NIGT1	Os02g0325600	LOC_Os02g22020	growth	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 We further demonstrate that NIGT1 constrains shoot growth by repressing the expression of growth-related regulatory genes, including brassinolide signal transduction master regulator BZR1, cell division regulator CYCB1;1, and DNA replication regulator PSF3
NIGT1	Os02g0325600	LOC_Os02g22020	growth	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Our findings reveal the function of NIGT1 in orchestrating plant growth and Pi-starvation signaling, and also provide evidence that NIGT1 acts as a safeguard to avoid hyperresponse during Pi-starvation stress in rice
NIGT1	Os02g0325600	LOC_Os02g22020	shoot	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 We further demonstrate that NIGT1 constrains shoot growth by repressing the expression of growth-related regulatory genes, including brassinolide signal transduction master regulator BZR1, cell division regulator CYCB1;1, and DNA replication regulator PSF3
NIGT1	Os02g0325600	LOC_Os02g22020	stress	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Our findings reveal the function of NIGT1 in orchestrating plant growth and Pi-starvation signaling, and also provide evidence that NIGT1 acts as a safeguard to avoid hyperresponse during Pi-starvation stress in rice
NIGT1	Os02g0325600	LOC_Os02g22020	cell division	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 We further demonstrate that NIGT1 constrains shoot growth by repressing the expression of growth-related regulatory genes, including brassinolide signal transduction master regulator BZR1, cell division regulator CYCB1;1, and DNA replication regulator PSF3
NIGT1	Os02g0325600	LOC_Os02g22020	plant growth	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.
NIGT1	Os02g0325600	LOC_Os02g22020	plant growth	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Here we show that a Pi-starvation induced transcription factor NIGT1 (NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1) controls plant growth and prevents a hyperresponse to Pi-starvation by directly repressing the expression of growth-related and Pi-signaling genes to achieve a balance between growth and response under a varying Pi environment
NIGT1	Os02g0325600	LOC_Os02g22020	plant growth	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Our findings reveal the function of NIGT1 in orchestrating plant growth and Pi-starvation signaling, and also provide evidence that NIGT1 acts as a safeguard to avoid hyperresponse during Pi-starvation stress in rice
NIGT1	Os02g0325600	LOC_Os02g22020	signal transduction	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 We further demonstrate that NIGT1 constrains shoot growth by repressing the expression of growth-related regulatory genes, including brassinolide signal transduction master regulator BZR1, cell division regulator CYCB1;1, and DNA replication regulator PSF3
NIGT1	Os02g0325600	LOC_Os02g22020	phosphate	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.
NIGT1	Os02g0325600	LOC_Os02g22020	Pi	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Here we show that a Pi-starvation induced transcription factor NIGT1 (NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1) controls plant growth and prevents a hyperresponse to Pi-starvation by directly repressing the expression of growth-related and Pi-signaling genes to achieve a balance between growth and response under a varying Pi environment
NIGT1	Os02g0325600	LOC_Os02g22020	pi	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Here we show that a Pi-starvation induced transcription factor NIGT1 (NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1) controls plant growth and prevents a hyperresponse to Pi-starvation by directly repressing the expression of growth-related and Pi-signaling genes to achieve a balance between growth and response under a varying Pi environment
NIGT1	Os02g0325600	LOC_Os02g22020	 pi 	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Here we show that a Pi-starvation induced transcription factor NIGT1 (NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1) controls plant growth and prevents a hyperresponse to Pi-starvation by directly repressing the expression of growth-related and Pi-signaling genes to achieve a balance between growth and response under a varying Pi environment
NIGT1	Os02g0325600	LOC_Os02g22020	phosphate starvation	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.
NIGT1	Os02g0325600	LOC_Os02g22020	transcriptional repressor	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	 Here we show that a Pi-starvation induced transcription factor NIGT1 (NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1) controls plant growth and prevents a hyperresponse to Pi-starvation by directly repressing the expression of growth-related and Pi-signaling genes to achieve a balance between growth and response under a varying Pi environment
NIGT1	Os02g0325600	LOC_Os02g22020	phosphate starvation signaling	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	transcription factor	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	The NL1 gene encodes a GATA-type transcription factor with a single zinc finger domain, and its transcripts are detected predominantly in the bract primordia, which normally degenerate in the wild-type plants
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	panicle	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	To elucidate the underlying molecular mechanisms, we cloned the rice gene NECK LEAF 1 (NL1), which when mutated results in delays in flowering time, smaller panicles with overgrown bracts and abnormal UPI elongation patterns
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	flower	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	To elucidate the underlying molecular mechanisms, we cloned the rice gene NECK LEAF 1 (NL1), which when mutated results in delays in flowering time, smaller panicles with overgrown bracts and abnormal UPI elongation patterns
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	flower	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	Furthermore, the expression of two regulators of flowering, Hd3a and OsMADS1, was also affected in the nl1 mutant
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	vegetative	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	Overexpression of NL1 in transgenic plants often gives rise to severe growth retardation, less vegetative phytomers and smaller leaves, suggesting that NL1 plays an important role in organ differentiation
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	reproductive	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	On the basis of these findings, we propose that NL1 is an intrinsic factor that modulates and coordinates organogenesis through regulating the expression of PLA1 and other regulatory genes during reproductive development in rice
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	leaf	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	To elucidate the underlying molecular mechanisms, we cloned the rice gene NECK LEAF 1 (NL1), which when mutated results in delays in flowering time, smaller panicles with overgrown bracts and abnormal UPI elongation patterns
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	growth	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	Overexpression of NL1 in transgenic plants often gives rise to severe growth retardation, less vegetative phytomers and smaller leaves, suggesting that NL1 plays an important role in organ differentiation
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	flowering time	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	To elucidate the underlying molecular mechanisms, we cloned the rice gene NECK LEAF 1 (NL1), which when mutated results in delays in flowering time, smaller panicles with overgrown bracts and abnormal UPI elongation patterns
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	leaf	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	Histological analysis showed that the length of epidermal cells and number of longitudinal veins were decreased in the flag leaf of the snfl1 mutant
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	leaf	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	Analysis of RT-PCR and the SNFL1 promoter by means of a GUS fusion expression assay showed that abundance of SNFL1 transcripts was higher in the culm, leaf sheath, and root
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	leaf	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	We conclude that SNFL1 is an important regulator of leaf development, the identification of which might have important implications for future research on GATA transcription factors
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	transcription factor	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	Map-based cloning indicated that a member of the GATA family of transcription factors is a candidate gene for SNFL1
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	transcription factor	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	We conclude that SNFL1 is an important regulator of leaf development, the identification of which might have important implications for future research on GATA transcription factors
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	root	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	Analysis of RT-PCR and the SNFL1 promoter by means of a GUS fusion expression assay showed that abundance of SNFL1 transcripts was higher in the culm, leaf sheath, and root
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	leaf development	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	We conclude that SNFL1 is an important regulator of leaf development, the identification of which might have important implications for future research on GATA transcription factors
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	map-based cloning	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	Map-based cloning indicated that a member of the GATA family of transcription factors is a candidate gene for SNFL1
NL1|SNFL1	Os05g0578900	LOC_Os05g50270	nucleus	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	Expression of the SNFL1-GFP fusion protein in rice protoplasts showed that SNFL1 was localized in nucleus
NLS1	Os11g0249000	LOC_Os11g14380	sa	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	In addition, because the morphology and constitutive defense responses of nls1-1D were not suppressed by blocking SA or NPR1 transcript accumulation, we suggest that NLS1 mediates both SA and NPR1-independent defense signaling pathways in rice
NLS1	Os11g0249000	LOC_Os11g14380	sheath	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	In this study, we characterized the semi-dominant mutant nls1-1D (necrotic leaf sheath 1) of rice, which displays spontaneous lesions, specifically on leaf sheaths, with a developmental pattern
NLS1	Os11g0249000	LOC_Os11g14380	leaf	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	In this study, we characterized the semi-dominant mutant nls1-1D (necrotic leaf sheath 1) of rice, which displays spontaneous lesions, specifically on leaf sheaths, with a developmental pattern
NLS1	Os11g0249000	LOC_Os11g14380	cell death	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	nls1-1D plants also exhibited constitutively activated defense responses, including extensive cell death, excess hydrogen peroxide and salicylic acid (SA) accumulation, up-regulated expressions of pathogenesis-related genes, and enhanced resistance to bacterial pathogens
NLS1	Os11g0249000	LOC_Os11g14380	defense response	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	nls1-1D plants also exhibited constitutively activated defense responses, including extensive cell death, excess hydrogen peroxide and salicylic acid (SA) accumulation, up-regulated expressions of pathogenesis-related genes, and enhanced resistance to bacterial pathogens
NLS1	Os11g0249000	LOC_Os11g14380	defense response	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	In addition, because the morphology and constitutive defense responses of nls1-1D were not suppressed by blocking SA or NPR1 transcript accumulation, we suggest that NLS1 mediates both SA and NPR1-independent defense signaling pathways in rice
NLS1	Os11g0249000	LOC_Os11g14380	defense response	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice
NLS1	Os11g0249000	LOC_Os11g14380	defense	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	nls1-1D plants also exhibited constitutively activated defense responses, including extensive cell death, excess hydrogen peroxide and salicylic acid (SA) accumulation, up-regulated expressions of pathogenesis-related genes, and enhanced resistance to bacterial pathogens
NLS1	Os11g0249000	LOC_Os11g14380	defense	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	In addition, because the morphology and constitutive defense responses of nls1-1D were not suppressed by blocking SA or NPR1 transcript accumulation, we suggest that NLS1 mediates both SA and NPR1-independent defense signaling pathways in rice
NLS1	Os11g0249000	LOC_Os11g14380	defense	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice
NLS1	Os11g0249000	LOC_Os11g14380	salicylic acid	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice	nls1-1D plants also exhibited constitutively activated defense responses, including extensive cell death, excess hydrogen peroxide and salicylic acid (SA) accumulation, up-regulated expressions of pathogenesis-related genes, and enhanced resistance to bacterial pathogens
NOG1	Os01g0752200	LOC_Os01g54860	grain	NOG1 increases grain production in rice.	NOG1 increases grain production in rice.
NOG1	Os01g0752200	LOC_Os01g54860	grain	NOG1 increases grain production in rice.	 NOG1 can significantly increase the grain yield of commercial high-yield varieties: introduction of NOG1 increases the grain yield by 25
NOG1	Os01g0752200	LOC_Os01g54860	grain	NOG1 increases grain production in rice.	8% in the NOG1-deficient rice cultivar Zhonghua 17, and overexpression of NOG1 can further increase the grain yield by 19
NOG1	Os01g0752200	LOC_Os01g54860	grain	NOG1 increases grain production in rice.	 Interestingly, NOG1 plays a prominent role in increasing grain number, but does not change heading date or seed-setting rate
NOG1	Os01g0752200	LOC_Os01g54860	grain number	NOG1 increases grain production in rice.	 Interestingly, NOG1 plays a prominent role in increasing grain number, but does not change heading date or seed-setting rate
NOG1	Os01g0752200	LOC_Os01g54860	grain yield	NOG1 increases grain production in rice.	 NOG1 can significantly increase the grain yield of commercial high-yield varieties: introduction of NOG1 increases the grain yield by 25
NOG1	Os01g0752200	LOC_Os01g54860	grain yield	NOG1 increases grain production in rice.	8% in the NOG1-deficient rice cultivar Zhonghua 17, and overexpression of NOG1 can further increase the grain yield by 19
NOG1	Os01g0752200	LOC_Os01g54860	yield	NOG1 increases grain production in rice.	 NOG1 can significantly increase the grain yield of commercial high-yield varieties: introduction of NOG1 increases the grain yield by 25
NOG1	Os01g0752200	LOC_Os01g54860	yield	NOG1 increases grain production in rice.	8% in the NOG1-deficient rice cultivar Zhonghua 17, and overexpression of NOG1 can further increase the grain yield by 19
NOG1	Os01g0752200	LOC_Os01g54860	heading date	NOG1 increases grain production in rice.	 Interestingly, NOG1 plays a prominent role in increasing grain number, but does not change heading date or seed-setting rate
NOG1	Os01g0752200	LOC_Os01g54860	grain	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.
NOG1	Os01g0752200	LOC_Os01g54860	grain	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	 Previously we isolated the domestication-related gene NOG1 which affects rice grain number and yield
NOG1	Os01g0752200	LOC_Os01g54860	grain number	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	 Previously we isolated the domestication-related gene NOG1 which affects rice grain number and yield
NOG1	Os01g0752200	LOC_Os01g54860	grain yield	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.
NOG1	Os01g0752200	LOC_Os01g54860	tolerance	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.
NOG1	Os01g0752200	LOC_Os01g54860	tolerance	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	 Additionally, we observed NOG1 influences the chilling tolerance of rice
NOG1	Os01g0752200	LOC_Os01g54860	yield	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.
NOG1	Os01g0752200	LOC_Os01g54860	yield	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	 Previously we isolated the domestication-related gene NOG1 which affects rice grain number and yield
NOG1	Os01g0752200	LOC_Os01g54860	cold tolerance	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.
NOG1	Os01g0752200	LOC_Os01g54860	cold	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.
NOG1	Os01g0752200	LOC_Os01g54860	cold	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	 Through genome-wide transcriptional analysis after cold treatment at 10°C, there were 717 differentially expressed genes (DEGs) in nog1 near-isogenic lines compared with the control Guichao 2, including 432 up-regulated DEGs and 284 down-regulated DEGs
NOG1	Os01g0752200	LOC_Os01g54860	chilling	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	 Additionally, we observed NOG1 influences the chilling tolerance of rice
NOG1	Os01g0752200	LOC_Os01g54860	chilling tolerance	The grain yield regulator NOG1 plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	 Additionally, we observed NOG1 influences the chilling tolerance of rice
NOL	Os03g0654600	LOC_Os03g45194	chlorophyll	Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice	These observations suggest that NOL and NYC1 are co-localized in the thylakoid membrane and act in the form of a complex as a chlorophyll b reductase in rice.
NPP1|OsPAP27b	Os08g0531000	LOC_Os08g41880	chloroplast	Rice plastidial N-glycosylated nucleotide pyrophosphatase/phosphodiesterase is transported from the ER-golgi to the chloroplast through the secretory pathway	Brefeldin A treatment of NPP1-GFP-expressing cells prevented NPP1-GFP accumulation in the chloroplasts
NPP1|OsPAP27b	Os08g0531000	LOC_Os08g41880	chloroplast	Rice plastidial N-glycosylated nucleotide pyrophosphatase/phosphodiesterase is transported from the ER-golgi to the chloroplast through the secretory pathway	Endo-H digestibility studies revealed that both NPP1 and NPP1-GFP in the chloroplast are glycosylated
Nrat1	Os02g0131800	LOC_Os02g03900	transporter	Plasma membrane-localized transporter for aluminum in rice	Herein, we report a transporter, Nrat1 (Nramp aluminum transporter 1), specific for trivalent Al ion in rice
Nrat1	Os02g0131800	LOC_Os02g03900	transporter	Plasma membrane-localized transporter for aluminum in rice	We therefore concluded that Nrat1 is a plasma membrane-localized transporter for trivalent Al, which is required for a prior step of final Al detoxification through sequestration of Al into vacuoles
Nrat1	Os02g0131800	LOC_Os02g03900	root	Plasma membrane-localized transporter for aluminum in rice	Nrat1 is localized at the plasma membranes of all cells of root tips except epidermal cells
Nrat1	Os02g0131800	LOC_Os02g03900	root	Plasma membrane-localized transporter for aluminum in rice	Expression of Nrat1 is up-regulated by Al in the roots and regulated by a C2H2 zinc finger transcription factor (ART1)
Nrat1	Os02g0131800	LOC_Os02g03900	manganese	Plasma membrane-localized transporter for aluminum in rice	When expressed in yeast, Nrat1 transports trivalent Al ion, but not other divalent ions, such as manganese, iron, and cadmium, or the Al-citrate complex
Nrat1	Os02g0131800	LOC_Os02g03900	transcription factor	Plasma membrane-localized transporter for aluminum in rice	Expression of Nrat1 is up-regulated by Al in the roots and regulated by a C2H2 zinc finger transcription factor (ART1)
Nrat1	Os02g0131800	LOC_Os02g03900	iron	Plasma membrane-localized transporter for aluminum in rice	When expressed in yeast, Nrat1 transports trivalent Al ion, but not other divalent ions, such as manganese, iron, and cadmium, or the Al-citrate complex
Nrat1	Os02g0131800	LOC_Os02g03900	aluminum	Plasma membrane-localized transporter for aluminum in rice	Herein, we report a transporter, Nrat1 (Nramp aluminum transporter 1), specific for trivalent Al ion in rice
Nrat1	Os02g0131800	LOC_Os02g03900	cell wall	Plasma membrane-localized transporter for aluminum in rice	Knockout of Nrat1 resulted in decreased Al uptake, increased Al binding to cell wall, and enhanced Al sensitivity, but did not affect the tolerance to other metals
Nrat1	Os02g0131800	LOC_Os02g03900	cadmium	Plasma membrane-localized transporter for aluminum in rice	When expressed in yeast, Nrat1 transports trivalent Al ion, but not other divalent ions, such as manganese, iron, and cadmium, or the Al-citrate complex
Nrat1	Os02g0131800	LOC_Os02g03900	tolerance	Genome-wide association mapping of aluminum toxicity tolerance and fine mapping of a candidate gene for Nrat1 in rice.	Genome-wide association mapping of aluminum toxicity tolerance and fine mapping of a candidate gene for Nrat1 in rice.
Nrat1	Os02g0131800	LOC_Os02g03900	tolerance	Genome-wide association mapping of aluminum toxicity tolerance and fine mapping of a candidate gene for Nrat1 in rice.	Haplotype analysis of Nrat1 using 327 3K RGP accessions indicated that minor allele variations in aus and indica subpopulations decreased Al toxicity tolerance in rice
Nrat1	Os02g0131800	LOC_Os02g03900	aluminum	Genome-wide association mapping of aluminum toxicity tolerance and fine mapping of a candidate gene for Nrat1 in rice.	Genome-wide association mapping of aluminum toxicity tolerance and fine mapping of a candidate gene for Nrat1 in rice.
NRP1	Os07g0471900	LOC_Os07g28890	photosynthesis	Knocking out a negative regulator of photosynthesis 1 (NRP1) increases rice leaf photosynthesis and biomass production in the field	The NRP1 showed significantly negative correlation with the expression of many genes involved in photosynthesis
NRP1	Os07g0471900	LOC_Os07g28890	photosynthesis	Knocking out a negative regulator of photosynthesis 1 (NRP1) increases rice leaf photosynthesis and biomass production in the field	Knocking out NPR1 led to greater photosynthesis and increased biomass in the field, while overexpression of NRP1 decreased photosynthesis and biomass
NRP1	Os07g0471900	LOC_Os07g28890	photosynthesis	Knocking out a negative regulator of photosynthesis 1 (NRP1) increases rice leaf photosynthesis and biomass production in the field	Protein transactivation experiments show that NRP1 is a transcription activator, implying that NRP1 may indirectly regulate photosynthesis gene expression through an unknown regulator
NRP1	Os07g0471900	LOC_Os07g28890	biomass	Knocking out a negative regulator of photosynthesis 1 (NRP1) increases rice leaf photosynthesis and biomass production in the field	Knocking out NPR1 led to greater photosynthesis and increased biomass in the field, while overexpression of NRP1 decreased photosynthesis and biomass
NRP1	Os07g0471900	LOC_Os07g28890	transcription activator	Knocking out a negative regulator of photosynthesis 1 (NRP1) increases rice leaf photosynthesis and biomass production in the field	Protein transactivation experiments show that NRP1 is a transcription activator, implying that NRP1 may indirectly regulate photosynthesis gene expression through an unknown regulator
NRPD2	Os04g0641000	LOC_Os04g54840	dwarf	A null allele of the pol IV second subunit impacts stature and reproductive development in Oryza sativa.	 Homozygous nrpd2 mutants have neither gametophytic defects nor embryo lethality, although adult plants are dwarf and sterile
NRPD2	Os04g0641000	LOC_Os04g54840	sterile	A null allele of the pol IV second subunit impacts stature and reproductive development in Oryza sativa.	 Homozygous nrpd2 mutants have neither gametophytic defects nor embryo lethality, although adult plants are dwarf and sterile
NRPD2	Os04g0641000	LOC_Os04g54840	embryo	A null allele of the pol IV second subunit impacts stature and reproductive development in Oryza sativa.	 Homozygous nrpd2 mutants have neither gametophytic defects nor embryo lethality, although adult plants are dwarf and sterile
NRR	Os01g0130200	LOC_Os01g03940	disease resistance	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1
NRR	Os01g0130200	LOC_Os01g03940	xoo	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1	This phenotype was correlated with elevated NRR mRNA and protein levels and increased Xoo growth
NRR	Os01g0130200	LOC_Os01g03940	disease	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1
NRR	Os01g0130200	LOC_Os01g03940	defense	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1	Over-expression of NRR suppressed the induction of defense-related genes
NRR	Os01g0130200	LOC_Os01g03940	defense	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1	NRR:GFP (green fluorescent protein) protein was localized to the nucleus, indicating that NRR may act directly to suppress the activation of defense genes
NRR	Os01g0130200	LOC_Os01g03940	growth	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1	This phenotype was correlated with elevated NRR mRNA and protein levels and increased Xoo growth
NRR|CRCT	Os05g0595300	LOC_Os05g51690	root	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	We report here the expression and biological functions of a previously uncharacterized rice gene that we have named NRR (nutrition response and root growth)
NRR|CRCT	Os05g0595300	LOC_Os05g51690	root	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	Expression of NRR in rice seedling roots was significantly influenced by deficiency of macronutrients
NRR|CRCT	Os05g0595300	LOC_Os05g51690	root	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	Knock-down of expression of NRRa or NRRb by RNA interference resulted in enhanced rice root growth
NRR|CRCT	Os05g0595300	LOC_Os05g51690	root	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	By contrast, overexpression of NRRa in rice exhibited significantly retarded root growth
NRR|CRCT	Os05g0595300	LOC_Os05g51690	root	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	These results revealed that both NRRa and NRRb played negative regulatory roles in rice root growth
NRR|CRCT	Os05g0595300	LOC_Os05g51690	root	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	Our findings suggest that NRRa and NRRb, acting as the key components, modulate the rice root architecture with the availability of macronutrients
NRR|CRCT	Os05g0595300	LOC_Os05g51690	root	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth
NRR|CRCT	Os05g0595300	LOC_Os05g51690	root architecture	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	Our findings suggest that NRRa and NRRb, acting as the key components, modulate the rice root architecture with the availability of macronutrients
NRR|CRCT	Os05g0595300	LOC_Os05g51690	seedling	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	Expression of NRR in rice seedling roots was significantly influenced by deficiency of macronutrients
NRR|CRCT	Os05g0595300	LOC_Os05g51690	growth	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	We report here the expression and biological functions of a previously uncharacterized rice gene that we have named NRR (nutrition response and root growth)
NRR|CRCT	Os05g0595300	LOC_Os05g51690	growth	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	Knock-down of expression of NRRa or NRRb by RNA interference resulted in enhanced rice root growth
NRR|CRCT	Os05g0595300	LOC_Os05g51690	growth	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	By contrast, overexpression of NRRa in rice exhibited significantly retarded root growth
NRR|CRCT	Os05g0595300	LOC_Os05g51690	growth	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	These results revealed that both NRRa and NRRb played negative regulatory roles in rice root growth
NRR|CRCT	Os05g0595300	LOC_Os05g51690	growth	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth
NRR|CRCT	Os05g0595300	LOC_Os05g51690	architecture	A novel rice gene, NRR responds to macronutrient deficiency and regulates root growth	Our findings suggest that NRRa and NRRb, acting as the key components, modulate the rice root architecture with the availability of macronutrients
NRR|CRCT	Os05g0595300	LOC_Os05g51690	leaf	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Promoter GUS analysis showed that CRCT was highly expressed in the phloem of various tissues such as leaf blade and leaf sheath
NRR|CRCT	Os05g0595300	LOC_Os05g51690	growth	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Overexpression or RNAi knockdown of CRCT had no appreciable effect on plant growth and photosynthesis except that tiller angle was significantly increased by the overexpression
NRR|CRCT	Os05g0595300	LOC_Os05g51690	tiller	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Overexpression or RNAi knockdown of CRCT had no appreciable effect on plant growth and photosynthesis except that tiller angle was significantly increased by the overexpression
NRR|CRCT	Os05g0595300	LOC_Os05g51690	sheath	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Promoter GUS analysis showed that CRCT was highly expressed in the phloem of various tissues such as leaf blade and leaf sheath
NRR|CRCT	Os05g0595300	LOC_Os05g51690	starch	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.
NRR|CRCT	Os05g0595300	LOC_Os05g51690	starch	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	The expressions of several genes related to starch synthesis such as ADP-glucose pyrophospholylase and α-glucan phospholylase were significantly changed in transgenic lines and positively correlated with the expression levels of CRCT
NRR|CRCT	Os05g0595300	LOC_Os05g51690	starch	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Given these observations, we suggest that CRCT is a positive regulator of starch accumulation in vegetative tissues, regulating coordinated expression of starch synthesis genes in response to the levels of photoassimilates
NRR|CRCT	Os05g0595300	LOC_Os05g51690	vegetative	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.
NRR|CRCT	Os05g0595300	LOC_Os05g51690	vegetative	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Given these observations, we suggest that CRCT is a positive regulator of starch accumulation in vegetative tissues, regulating coordinated expression of starch synthesis genes in response to the levels of photoassimilates
NRR|CRCT	Os05g0595300	LOC_Os05g51690	photosynthesis	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Overexpression or RNAi knockdown of CRCT had no appreciable effect on plant growth and photosynthesis except that tiller angle was significantly increased by the overexpression
NRR|CRCT	Os05g0595300	LOC_Os05g51690	phloem	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Promoter GUS analysis showed that CRCT was highly expressed in the phloem of various tissues such as leaf blade and leaf sheath
NRR|CRCT	Os05g0595300	LOC_Os05g51690	tiller angle	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Overexpression or RNAi knockdown of CRCT had no appreciable effect on plant growth and photosynthesis except that tiller angle was significantly increased by the overexpression
NRR|CRCT	Os05g0595300	LOC_Os05g51690	sucrose	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	The expression of CRCT showed diurnal oscillation peaked at the end of light period and was also increased by sugars such as glucose and sucrose
NRR|CRCT	Os05g0595300	LOC_Os05g51690	plant growth	CO2 Responsive CCT protein, CRCT Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Overexpression or RNAi knockdown of CRCT had no appreciable effect on plant growth and photosynthesis except that tiller angle was significantly increased by the overexpression
NRR|CRCT	Os05g0595300	LOC_Os05g51690	leaf	Starch Content in Leaf Sheath Controlled by CO2 Responsive CCT Protein is a Potential Determinant of Photosynthetic Capacity in Rice.	In this study, we analyzed the effects of the starch level in the leaf sheath on the photosynthetic rate in leaf blade using CRCT overexpression and RNAi knockdown transgenic rice grown under ambient (38 Pa) or elevated (100 Pa) CO2 conditions
NRR|CRCT	Os05g0595300	LOC_Os05g51690	leaf	Starch Content in Leaf Sheath Controlled by CO2 Responsive CCT Protein is a Potential Determinant of Photosynthetic Capacity in Rice.	In leaf sheath, the starch content was markedly changed in relation to CRCT expression levels under both CO2 conditions
NRR|CRCT	Os05g0595300	LOC_Os05g51690	starch	Starch Content in Leaf Sheath Controlled by CO2 Responsive CCT Protein is a Potential Determinant of Photosynthetic Capacity in Rice.	In this study, we analyzed the effects of the starch level in the leaf sheath on the photosynthetic rate in leaf blade using CRCT overexpression and RNAi knockdown transgenic rice grown under ambient (38 Pa) or elevated (100 Pa) CO2 conditions
NRR|CRCT	Os05g0595300	LOC_Os05g51690	starch	Starch Content in Leaf Sheath Controlled by CO2 Responsive CCT Protein is a Potential Determinant of Photosynthetic Capacity in Rice.	In leaf sheath, the starch content was markedly changed in relation to CRCT expression levels under both CO2 conditions
NRR|CRCT	Os05g0595300	LOC_Os05g51690	sheath	Starch Content in Leaf Sheath Controlled by CO2 Responsive CCT Protein is a Potential Determinant of Photosynthetic Capacity in Rice.	In this study, we analyzed the effects of the starch level in the leaf sheath on the photosynthetic rate in leaf blade using CRCT overexpression and RNAi knockdown transgenic rice grown under ambient (38 Pa) or elevated (100 Pa) CO2 conditions
NRRB	Os10g0548700	LOC_Os10g40100	sheath	Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice	NRRB, a receptor-like cytoplasmic kinase gene was preferentially expressed in leaf blades and leaf sheaths where the pathogen colonized
NRRB	Os10g0548700	LOC_Os10g40100	leaf	Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice	NRRB, a receptor-like cytoplasmic kinase gene was preferentially expressed in leaf blades and leaf sheaths where the pathogen colonized
NRRB	Os10g0548700	LOC_Os10g40100	leaf	Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice	Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	root hair	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	Northern-blot and in situ hybridization analysis indicated that OsNRT1 is constitutively expressed in the most external layer of the root, epidermis and root hair
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	nitrate	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	As a first step toward that goal, we have cloned a nitrate transporter gene from rice called OsNRT1
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	nitrate	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	OsNRT1 is a new member of a growing transporter family called PTR, which consists not only of nitrate transporters from higher plants that are homologs of the Arabidopsis CHL1 (AtNRT1) protein, but also peptide transporters from a wide variety of genera including animals, plants, fungi, and bacteria
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	nitrate	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	However, despite the fact that OsNRT1 shares a higher degree of sequence identity with the two peptide transporters from plants (approximately 50%) than with the nitrate transporters (approximately 40%) of the PTR family, no peptide transport activity was observed when OsNRT1 was expressed in either Xenopus oocytes or yeast
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	nitrate	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	Furthermore, contrasting the dual-affinity nitrate transport activity of CHL1, OsNRT1 displayed only low-affinity nitrate transport activity in Xenopus oocytes, with a K(m) value of approximately 9 mM
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	nitrate	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	These data strongly indicate that OsNRT1 encodes a constitutive component of a low-affinity nitrate uptake system for rice
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	nitrate	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	transporter	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	As a first step toward that goal, we have cloned a nitrate transporter gene from rice called OsNRT1
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	transporter	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	OsNRT1 is a new member of a growing transporter family called PTR, which consists not only of nitrate transporters from higher plants that are homologs of the Arabidopsis CHL1 (AtNRT1) protein, but also peptide transporters from a wide variety of genera including animals, plants, fungi, and bacteria
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	transporter	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	However, despite the fact that OsNRT1 shares a higher degree of sequence identity with the two peptide transporters from plants (approximately 50%) than with the nitrate transporters (approximately 40%) of the PTR family, no peptide transport activity was observed when OsNRT1 was expressed in either Xenopus oocytes or yeast
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	transporter	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice
NRT1|OsNRT1|OsNRT1.1	Os03g0235900	LOC_Os03g13274	root	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice	Northern-blot and in situ hybridization analysis indicated that OsNRT1 is constitutively expressed in the most external layer of the root, epidermis and root hair
NRTP1	Os12g0272800	LOC_Os12g17410	map-based cloning	A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice.	Map-based cloning revealed that NRTP1 encoded a typical coiled-coil nucleotide binding leucine rich repeat (CC-NB-LRR) type protein and the mutation caused an amino acid substitution in the Nucleotide-Binding adaptor shared by Apaf1, certain R genes and CED4 (NB-ARC) domain, which may cause constitutive auto-activation of the NRTP1 protein
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	spikelet	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	nsg (nonstop glumes) mutant affecting spikelet development was identified from EMS-treated Jinhui10 (Oryza sativa L
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	spikelet	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	The mutant phenotype suggests that NSG is involved in the whole rice spikelet development
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	spikelet	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	The expression of OsMADS4, OsMADS16, DL and OsMADS3 decreased distinctly, and OsMADS1 increased in nsg panicle, suggests that NSG affected spikelet development through influencing the expression of floral hometic genes
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	development	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	nsg (nonstop glumes) mutant affecting spikelet development was identified from EMS-treated Jinhui10 (Oryza sativa L
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	development	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	The mutant phenotype suggests that NSG is involved in the whole rice spikelet development
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	development	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	The expression of OsMADS4, OsMADS16, DL and OsMADS3 decreased distinctly, and OsMADS1 increased in nsg panicle, suggests that NSG affected spikelet development through influencing the expression of floral hometic genes
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	floral	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	The mutation of NSG influenced the transcription level of some floral hometic genes
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	floral	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	The expression of OsMADS4, OsMADS16, DL and OsMADS3 decreased distinctly, and OsMADS1 increased in nsg panicle, suggests that NSG affected spikelet development through influencing the expression of floral hometic genes
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	spikelet development	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	nsg (nonstop glumes) mutant affecting spikelet development was identified from EMS-treated Jinhui10 (Oryza sativa L
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	spikelet development	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	The mutant phenotype suggests that NSG is involved in the whole rice spikelet development
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	spikelet development	nonstop glumes (nsg), a novel mutant affects spikelet development in rice	The expression of OsMADS4, OsMADS16, DL and OsMADS3 decreased distinctly, and OsMADS1 increased in nsg panicle, suggests that NSG affected spikelet development through influencing the expression of floral hometic genes
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	spikelet	NONSTOP GLUMES 1 Encoding a C2H2 Zinc Finger Protein That Regulates Spikelet Development in Rice.	NSG1 encoded a member of the C2H2 zinc finger protein family and was expressed mainly in the organ primordia of the spikelet
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	spikelet	NONSTOP GLUMES 1 Encoding a C2H2 Zinc Finger Protein That Regulates Spikelet Development in Rice.	The results suggest that NSG1 plays a pivotal role in maintaining organ identities in the spikelet by repressing the expression of LHS1, DL, MFO1
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	zinc	NONSTOP GLUMES 1 Encoding a C2H2 Zinc Finger Protein That Regulates Spikelet Development in Rice.	NSG1 encoded a member of the C2H2 zinc finger protein family and was expressed mainly in the organ primordia of the spikelet
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	R protein	NONSTOP GLUMES 1 Encoding a C2H2 Zinc Finger Protein That Regulates Spikelet Development in Rice.	NSG1 encoded a member of the C2H2 zinc finger protein family and was expressed mainly in the organ primordia of the spikelet
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	lemma	LRG1 maintains sterile lemma identity by regulating OsMADS6 expression in rice	LRG1 maintains sterile lemma identity by regulating OsMADS6 expression in rice
NSG|NSG1|LRG1	Os04g0444100	LOC_Os04g36650	sterile	LRG1 maintains sterile lemma identity by regulating OsMADS6 expression in rice	LRG1 maintains sterile lemma identity by regulating OsMADS6 expression in rice
NTRA	Os06g0327300	LOC_Os06g22140	chloroplast	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRC is chloroplastic type NTR whereas OsNTRA and OsNTRB are cytoplasmic/mitochondrial type NTR
NTRA	Os06g0327300	LOC_Os06g22140	seedling	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRB was highly expressed in roots and shoots of one, two and three week-old rice seedlings, whereas the expression of OsNTRA in shoots was much higher than roots
NTRA	Os06g0327300	LOC_Os06g22140	root	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRB was highly expressed in roots and shoots of one, two and three week-old rice seedlings, whereas the expression of OsNTRA in shoots was much higher than roots
NTRA	Os06g0327300	LOC_Os06g22140	shoot	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRB was highly expressed in roots and shoots of one, two and three week-old rice seedlings, whereas the expression of OsNTRA in shoots was much higher than roots
NTRA	Os06g0327300	LOC_Os06g22140	mitochondria	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRC is chloroplastic type NTR whereas OsNTRA and OsNTRB are cytoplasmic/mitochondrial type NTR
NTRB	Os02g0713400	LOC_Os02g48290	seedling	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRB was highly expressed in roots and shoots of one, two and three week-old rice seedlings, whereas the expression of OsNTRA in shoots was much higher than roots
NTRB	Os02g0713400	LOC_Os02g48290	chloroplast	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRC is chloroplastic type NTR whereas OsNTRA and OsNTRB are cytoplasmic/mitochondrial type NTR
NTRB	Os02g0713400	LOC_Os02g48290	shoot	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRB was highly expressed in roots and shoots of one, two and three week-old rice seedlings, whereas the expression of OsNTRA in shoots was much higher than roots
NTRB	Os02g0713400	LOC_Os02g48290	root	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRB was highly expressed in roots and shoots of one, two and three week-old rice seedlings, whereas the expression of OsNTRA in shoots was much higher than roots
NTRB	Os02g0713400	LOC_Os02g48290	mitochondria	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice	OsNTRC is chloroplastic type NTR whereas OsNTRA and OsNTRB are cytoplasmic/mitochondrial type NTR
NTRC	Os07g0657900	LOC_Os07g46410	oxidative	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	We propose that NTRC constitutes an alternative system for chloroplast protection against oxidative damage, using NADPH as the source of reducing power
NTRC	Os07g0657900	LOC_Os07g46410	oxidative	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	Since no light-driven reduced ferredoxin is produced at night, the NTRC-BAS1 pathway may be a key detoxification system during darkness, with NADPH produced by the oxidative pentose phosphate pathway as the source of reducing power
NTRC	Os07g0657900	LOC_Os07g46410	oxidative	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage
NTRC	Os07g0657900	LOC_Os07g46410	photosynthesis	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	An Arabidopsis thaliana knockout mutant for NTRC shows irregular mesophyll cell shape, abnormal chloroplast structure, and unbalanced BAS1 redox state, resulting in impaired photosynthesis rate under low light
NTRC	Os07g0657900	LOC_Os07g46410	chloroplast	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	We show that rice (Oryza sativa) chloroplast NADPH THIOREDOXIN REDUCTASE (NTRC), with a thioredoxin domain, uses NADPH to reduce the chloroplast 2-Cys peroxiredoxin BAS1, which then reduces hydrogen peroxide
NTRC	Os07g0657900	LOC_Os07g46410	chloroplast	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	An Arabidopsis thaliana knockout mutant for NTRC shows irregular mesophyll cell shape, abnormal chloroplast structure, and unbalanced BAS1 redox state, resulting in impaired photosynthesis rate under low light
NTRC	Os07g0657900	LOC_Os07g46410	chloroplast	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	We propose that NTRC constitutes an alternative system for chloroplast protection against oxidative damage, using NADPH as the source of reducing power
NTRC	Os07g0657900	LOC_Os07g46410	chloroplast	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage
NTRC	Os07g0657900	LOC_Os07g46410	phosphate	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	Since no light-driven reduced ferredoxin is produced at night, the NTRC-BAS1 pathway may be a key detoxification system during darkness, with NADPH produced by the oxidative pentose phosphate pathway as the source of reducing power
NTRC	Os07g0657900	LOC_Os07g46410	senescence	Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage	Moreover, prolonged darkness followed by light/dark incubation produced an increase in hydrogen peroxide and lipid peroxidation in leaves and accelerated senescence of NTRC-deficient plants
nuRIP|OsjRIP11.2	Os11g0164000	LOC_Os11g06460	cytosol	Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice	Similar to OsRIP1, nuRIP also locates in the cytosol and the nucleus.
nuRIP|OsjRIP11.2	Os11g0164000	LOC_Os11g06460	nucleus	Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice	Similar to OsRIP1, nuRIP also locates in the cytosol and the nucleus.
nuRIP|OsjRIP11.2	Os11g0164000	LOC_Os11g06460	root	Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice	Although the overall mass of the plants from nuRIP line 2 was similar to that of wild-type plants, they had significantly longer root and shoot compared to wild-type plants.
nuRIP|OsjRIP11.2	Os11g0164000	LOC_Os11g06460	shoot	Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice	Although the overall mass of the plants from nuRIP line 2 was similar to that of wild-type plants, they had significantly longer root and shoot compared to wild-type plants.
nuRIP|OsjRIP11.2	Os11g0164000	LOC_Os11g06460	drought	Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice	The expression of OsRIP1 changes when rice is subjected to osmotic stress, ABA, jasmonates, cadmium, cold, drought and flooding, while the expression of nuRIP changes only during cadmium stress, drought, flooding and osmotic stress
nuRIP|OsjRIP11.2	Os11g0164000	LOC_Os11g06460	flooding	Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice	The expression of OsRIP1 changes when rice is subjected to osmotic stress, ABA, jasmonates, cadmium, cold, drought and flooding, while the expression of nuRIP changes only during cadmium stress, drought, flooding and osmotic stress
nuRIP|OsjRIP11.2	Os11g0164000	LOC_Os11g06460	osmotic stress	Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice	The expression of OsRIP1 changes when rice is subjected to osmotic stress, ABA, jasmonates, cadmium, cold, drought and flooding, while the expression of nuRIP changes only during cadmium stress, drought, flooding and osmotic stress
NY1	Os07g0507500	LOC_Os07g32406	fertility	Cytological Observations and Bulked-Segregant Analysis Coupled Global Genome Sequencing Reveal Two Genes Associated with Pollen Fertility in Tetraploid Rice	 Two mutants ny1 (LOC_Os07g32406) and ny2 (LOC_Os07g32040) were generated by CRISPR/Cas9 knockout in neo-tetraploid rice, and which exhibited low pollen fertility and abnormal chromosome behavior
NY1	Os07g0507500	LOC_Os07g32406	pollen	Cytological Observations and Bulked-Segregant Analysis Coupled Global Genome Sequencing Reveal Two Genes Associated with Pollen Fertility in Tetraploid Rice	 Two mutants ny1 (LOC_Os07g32406) and ny2 (LOC_Os07g32040) were generated by CRISPR/Cas9 knockout in neo-tetraploid rice, and which exhibited low pollen fertility and abnormal chromosome behavior
NY1	Os07g0507500	LOC_Os07g32406	development	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.
NY1	Os07g0507500	LOC_Os07g32406	development	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.	 RESULTS: Here, cytological observations of the NY1 mutant (ny1) indicated that ny1 exhibited abnormal tapetum and middle layer development
NY1	Os07g0507500	LOC_Os07g32406	pollen	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.	 The mutant of EAT1 was generated by CRISPR/Cas9 that showed abnormal tapetum and pollen wall formation, which was similar to ny1
NY1	Os07g0507500	LOC_Os07g32406	anther	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.
NY1	Os07g0507500	LOC_Os07g32406	tapetum	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.
NY1	Os07g0507500	LOC_Os07g32406	tapetum	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.	 RESULTS: Here, cytological observations of the NY1 mutant (ny1) indicated that ny1 exhibited abnormal tapetum and middle layer development
NY1	Os07g0507500	LOC_Os07g32406	tapetum	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.	 The mutant of EAT1 was generated by CRISPR/Cas9 that showed abnormal tapetum and pollen wall formation, which was similar to ny1
NY1	Os07g0507500	LOC_Os07g32406	pollen wall	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.	 The mutant of EAT1 was generated by CRISPR/Cas9 that showed abnormal tapetum and pollen wall formation, which was similar to ny1
NY2	Os07g0503700	LOC_Os07g32040	fertility	Cytological Observations and Bulked-Segregant Analysis Coupled Global Genome Sequencing Reveal Two Genes Associated with Pollen Fertility in Tetraploid Rice	Two mutants ny1 (LOC_Os07g32406) and ny2 (LOC_Os07g32040) were generated by CRISPR/Cas9 knockout in neo-tetraploid rice, and which exhibited low pollen fertility and abnormal chromosome behavior
NY2	Os07g0503700	LOC_Os07g32040	pollen	Cytological Observations and Bulked-Segregant Analysis Coupled Global Genome Sequencing Reveal Two Genes Associated with Pollen Fertility in Tetraploid Rice	Two mutants ny1 (LOC_Os07g32406) and ny2 (LOC_Os07g32040) were generated by CRISPR/Cas9 knockout in neo-tetraploid rice, and which exhibited low pollen fertility and abnormal chromosome behavior
NYC1	Os01g0227100	LOC_Os01g12710	chloroplast	Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence	Ultrastructural analysis of nyc1 chloroplasts revealed that large and thick grana were present even in the late stage of senescence, suggesting that degradation of LHCII is required for the proper degeneration of thylakoid membranes
NYC1	Os01g0227100	LOC_Os01g12710	chloroplast	Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence	Map-based cloning of NYC1 revealed that it encodes a chloroplast-localized short-chain dehydrogenase/reductase (SDR) with three transmembrane domains
NYC1	Os01g0227100	LOC_Os01g12710	leaf	Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice	Analysis of the nyc1 mutant, which shows the stay-green phenotype, revealed that chlorophyll b degradation is required for the degradation of light-harvesting complex II and thylakoid grana in leaf senescence
NYC1	Os01g0227100	LOC_Os01g12710	senescence	Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice	Analysis of the nyc1 mutant, which shows the stay-green phenotype, revealed that chlorophyll b degradation is required for the degradation of light-harvesting complex II and thylakoid grana in leaf senescence
NYC1	Os01g0227100	LOC_Os01g12710	senescence	Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice	Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice
NYC1	Os01g0227100	LOC_Os01g12710	senescence	Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence	non-yellow coloring1 (nyc1) is a rice (Oryza sativa) stay-green mutant in which chlorophyll degradation during senescence is impaired
NYC1	Os01g0227100	LOC_Os01g12710	senescence	Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence	Pigment analysis revealed that degradation of not only chlorophylls but also light-harvesting complex II (LHCII)-bound carotenoids was repressed in nyc1, in which most LHCII isoforms were selectively retained during senescence
NYC1	Os01g0227100	LOC_Os01g12710	senescence	Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence	Ultrastructural analysis of nyc1 chloroplasts revealed that large and thick grana were present even in the late stage of senescence, suggesting that degradation of LHCII is required for the proper degeneration of thylakoid membranes
NYC1	Os01g0227100	LOC_Os01g12710	senescence	Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence	Our data collectively suggest that the identified SDR protein NYC1 plays essential roles in the regulation of LHCII and thylakoid membrane degradation during senescence
NYC3|OsNYC3	Os06g0354700	LOC_Os06g24730	leaf	Defect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice	The chlorophyll content of nyc3 sgr double mutants at the late stage of leaf senescence was also similar to that of sgr
NYC3|OsNYC3	Os06g0354700	LOC_Os06g24730	senescence	Defect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice	nyc3 retained a higher chlorophyll a and chlorophyll b content than the wild-type but showed a decrease in other senescence parameters during dark incubation, suggesting that it is a non-functional stay-green mutant
NYC3|OsNYC3	Os06g0354700	LOC_Os06g24730	senescence	Defect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice	The chlorophyll content of nyc3 sgr double mutants at the late stage of leaf senescence was also similar to that of sgr
NYC3|OsNYC3	Os06g0354700	LOC_Os06g24730	resistance	Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.	Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.
NYC3|OsNYC3	Os06g0354700	LOC_Os06g24730	sheath	Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.	Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.
NYC3|OsNYC3	Os06g0354700	LOC_Os06g24730	chlorophyll	The Relationships among &quot;STAY-GREEN&quot; Trait, Post-Anthesis Assimilate Remobilization, and Grain Yield in Rice (Oryza sativa L.).	 Here, in this study, the overexpression and RNA interference lines of gene of OsNYC3 (Non-Yellow Coloring 3), a chlorophyll catabolism gene, were investigated
NYC4	Os07g0558500	LOC_Os07g37250	senescence	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence	From a rice mutant population generated by ionizing radiation, we isolated nyc4-1, a stay-green mutant with a defect in chlorophyll breakdown during leaf senescence
NYC4	Os07g0558500	LOC_Os07g37250	senescence	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence	Western blot analysis revealed that, in nyc4-1, the PSII core subunits D1 and D2 were significantly retained during leaf senescence in comparison with wild-type and other non-functional stay-green mutants, including sgr-2, a mutant of the key regulator of chlorophyll degradation SGR
NYC4	Os07g0558500	LOC_Os07g37250	senescence	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence	The role of NYC4 in degradation of chlorophyll and chlorophyll - protein complexes during leaf senescence is discussed
NYC4	Os07g0558500	LOC_Os07g37250	senescence	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence
NYC4	Os07g0558500	LOC_Os07g37250	leaf	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence	From a rice mutant population generated by ionizing radiation, we isolated nyc4-1, a stay-green mutant with a defect in chlorophyll breakdown during leaf senescence
NYC4	Os07g0558500	LOC_Os07g37250	leaf	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence	Western blot analysis revealed that, in nyc4-1, the PSII core subunits D1 and D2 were significantly retained during leaf senescence in comparison with wild-type and other non-functional stay-green mutants, including sgr-2, a mutant of the key regulator of chlorophyll degradation SGR
NYC4	Os07g0558500	LOC_Os07g37250	leaf	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence	The role of NYC4 in degradation of chlorophyll and chlorophyll - protein complexes during leaf senescence is discussed
NYC4	Os07g0558500	LOC_Os07g37250	leaf	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence
OASA1	Os03g0826500	LOC_Os03g61120	panicle	Characterization of rice anthranilate synthase alpha-subunit genes OASA1 and OASA2. Tryptophan accumulation in transgenic rice expressing a feedback-insensitive mutant of OASA1	OASA1 is expressed in all tissues tested, but the amount of its mRNA was greater in panicles than in leaves and roots
OASA1	Os03g0826500	LOC_Os03g61120	root	Characterization of rice anthranilate synthase alpha-subunit genes OASA1 and OASA2. Tryptophan accumulation in transgenic rice expressing a feedback-insensitive mutant of OASA1	OASA1 is expressed in all tissues tested, but the amount of its mRNA was greater in panicles than in leaves and roots
OASA2	Os03g0264400	LOC_Os03g15780	secondary metabolism	Characterization of rice anthranilate synthase alpha-subunit genes OASA1 and OASA2. Tryptophan accumulation in transgenic rice expressing a feedback-insensitive mutant of OASA1	furthermore, OASA2 expression was induced by a chitin heptamer, a potent elicitor, suggesting that OASA2 participates in secondary metabolism.
OASA2	Os03g0264400	LOC_Os03g15780	plastid	Characterization of rice anthranilate synthase alpha-subunit genes OASA1 and OASA2. Tryptophan accumulation in transgenic rice expressing a feedback-insensitive mutant of OASA1	These characteristics thus suggest that the NH2-termini of OASA1 and OASA2 also act as signal peptides for plastid localization
OCP	Os04g0650000	LOC_Os04g55650	auxin	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Moreover, OCP might be the cornerstone of blast resistance by suppressing the activation of JA and ET signaling pathways as well as promoting auxin signaling pathways
OCP	Os04g0650000	LOC_Os04g55650	resistance	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.
OCP	Os04g0650000	LOC_Os04g55650	resistance	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Therefore, OCP negatively regulates blast resistance in rice by interacting with OsRACK1A or OsSNAP32 and influencing the expression profiles of many resistance-related genes
OCP	Os04g0650000	LOC_Os04g55650	resistance	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Moreover, OCP might be the cornerstone of blast resistance by suppressing the activation of JA and ET signaling pathways as well as promoting auxin signaling pathways
OCP	Os04g0650000	LOC_Os04g55650	ja	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Moreover, OCP might be the cornerstone of blast resistance by suppressing the activation of JA and ET signaling pathways as well as promoting auxin signaling pathways
OCP	Os04g0650000	LOC_Os04g55650	JA	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Moreover, OCP might be the cornerstone of blast resistance by suppressing the activation of JA and ET signaling pathways as well as promoting auxin signaling pathways
OCP	Os04g0650000	LOC_Os04g55650	blast	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.
OCP	Os04g0650000	LOC_Os04g55650	blast	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Therefore, OCP negatively regulates blast resistance in rice by interacting with OsRACK1A or OsSNAP32 and influencing the expression profiles of many resistance-related genes
OCP	Os04g0650000	LOC_Os04g55650	blast	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Moreover, OCP might be the cornerstone of blast resistance by suppressing the activation of JA and ET signaling pathways as well as promoting auxin signaling pathways
OCP	Os04g0650000	LOC_Os04g55650	cytoplasm	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 OCP was expressed in all rice tissues and mainly located in the cytoplasm
OCP	Os04g0650000	LOC_Os04g55650	blast resistance	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.
OCP	Os04g0650000	LOC_Os04g55650	blast resistance	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Therefore, OCP negatively regulates blast resistance in rice by interacting with OsRACK1A or OsSNAP32 and influencing the expression profiles of many resistance-related genes
OCP	Os04g0650000	LOC_Os04g55650	blast resistance	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Moreover, OCP might be the cornerstone of blast resistance by suppressing the activation of JA and ET signaling pathways as well as promoting auxin signaling pathways
OCP	Os04g0650000	LOC_Os04g55650	 ja 	Knockout of a papain-like cysteine protease gene OCP enhances blast resistance in rice.	 Moreover, OCP might be the cornerstone of blast resistance by suppressing the activation of JA and ET signaling pathways as well as promoting auxin signaling pathways
OCPI1	Os01g0615100	LOC_Os01g42860	seed	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	The positive transgenic plants (OCPI1 was over-expressed) had significantly higher grain yield and seed setting rate than the wild type and the negative transgenic control (no over-expression of the transgene) under the severe drought stress conditions, whereas the potential yield of transgenic plants under normal growth conditions was not affected
OCPI1	Os01g0615100	LOC_Os01g42860	grain	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	The positive transgenic plants (OCPI1 was over-expressed) had significantly higher grain yield and seed setting rate than the wild type and the negative transgenic control (no over-expression of the transgene) under the severe drought stress conditions, whereas the potential yield of transgenic plants under normal growth conditions was not affected
OCPI1	Os01g0615100	LOC_Os01g42860	salt	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	The expression of beta-glucuronidase (GUS) reporter gene under the control of OCPI1 promoter transformed into rice was strongly induced by drought and salt stresses
OCPI1	Os01g0615100	LOC_Os01g42860	yield	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	The positive transgenic plants (OCPI1 was over-expressed) had significantly higher grain yield and seed setting rate than the wild type and the negative transgenic control (no over-expression of the transgene) under the severe drought stress conditions, whereas the potential yield of transgenic plants under normal growth conditions was not affected
OCPI1	Os01g0615100	LOC_Os01g42860	drought	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	The expression of beta-glucuronidase (GUS) reporter gene under the control of OCPI1 promoter transformed into rice was strongly induced by drought and salt stresses
OCPI1	Os01g0615100	LOC_Os01g42860	drought	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	The positive transgenic plants (OCPI1 was over-expressed) had significantly higher grain yield and seed setting rate than the wild type and the negative transgenic control (no over-expression of the transgene) under the severe drought stress conditions, whereas the potential yield of transgenic plants under normal growth conditions was not affected
OCPI1	Os01g0615100	LOC_Os01g42860	drought	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	Taken together, these data indicate that OCPI1 might potentially be useful in the genetic improvement of drought resistance in rice
OCPI1	Os01g0615100	LOC_Os01g42860	drought resistance	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	Taken together, these data indicate that OCPI1 might potentially be useful in the genetic improvement of drought resistance in rice
OCPI1	Os01g0615100	LOC_Os01g42860	grain yield	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	The positive transgenic plants (OCPI1 was over-expressed) had significantly higher grain yield and seed setting rate than the wild type and the negative transgenic control (no over-expression of the transgene) under the severe drought stress conditions, whereas the potential yield of transgenic plants under normal growth conditions was not affected
OCPI1	Os01g0615100	LOC_Os01g42860	salt stress	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	The expression of beta-glucuronidase (GUS) reporter gene under the control of OCPI1 promoter transformed into rice was strongly induced by drought and salt stresses
OCPI1	Os01g0615100	LOC_Os01g42860	growth	Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice	The positive transgenic plants (OCPI1 was over-expressed) had significantly higher grain yield and seed setting rate than the wild type and the negative transgenic control (no over-expression of the transgene) under the severe drought stress conditions, whereas the potential yield of transgenic plants under normal growth conditions was not affected
OcXII	Os01g0270100	LOC_Os01g16430	growth	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Meanwhile, rice plants silenced at the whole OcXII gene presented higher legumain and papain-like proteolytic activities, resulting in a faster initial seedling growth
OcXII	Os01g0270100	LOC_Os01g16430	growth	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Interestingly, the activity of OcXII promoter gene was detected in the rice seed scutellum region, and decreases with seedling growth
OcXII	Os01g0270100	LOC_Os01g16430	growth	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Seeds from these plants also exhibited slower growth at germination under ABA or alkaline conditions, while maintaining very high levels of OcXII transcriptional activation
OcXII	Os01g0270100	LOC_Os01g16430	seedling	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Meanwhile, rice plants silenced at the whole OcXII gene presented higher legumain and papain-like proteolytic activities, resulting in a faster initial seedling growth
OcXII	Os01g0270100	LOC_Os01g16430	seedling	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Interestingly, the activity of OcXII promoter gene was detected in the rice seed scutellum region, and decreases with seedling growth
OcXII	Os01g0270100	LOC_Os01g16430	development	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Overall, the results of this study highlight the association of OcXII with not only plant development processes, but also with stress response pathways
OcXII	Os01g0270100	LOC_Os01g16430	seed	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Interestingly, the activity of OcXII promoter gene was detected in the rice seed scutellum region, and decreases with seedling growth
OcXII	Os01g0270100	LOC_Os01g16430	ABA	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Seeds from these plants also exhibited slower growth at germination under ABA or alkaline conditions, while maintaining very high levels of OcXII transcriptional activation
OcXII	Os01g0270100	LOC_Os01g16430	stress	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Overall, the results of this study highlight the association of OcXII with not only plant development processes, but also with stress response pathways
OcXII	Os01g0270100	LOC_Os01g16430	ABA	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Seeds from these plants also exhibited slower growth at germination under ABA or alkaline conditions, while maintaining very high levels of OcXII transcriptional activation
OcXII	Os01g0270100	LOC_Os01g16430	stress response	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Overall, the results of this study highlight the association of OcXII with not only plant development processes, but also with stress response pathways
OcXII	Os01g0270100	LOC_Os01g16430	plant development	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Overall, the results of this study highlight the association of OcXII with not only plant development processes, but also with stress response pathways
ODCa	Os09g0543400	LOC_Os09g37120	shoot	Putrescine differently influences the effect of salt stress on polyamine metabolism and ethylene synthesis in rice cultivars differing in salt resistance	Gene expression followed by reverse transcription-PCR suggested that putrescine could have a post-translational impact on genes coding for ADC (ADCa) and ODC (ODCa and ODCb) but could induce a transcriptional activation of genes coding for PAO (PAOb) mainly in the shoot of salt-stressed plants
ODCa	Os09g0543400	LOC_Os09g37120	salt	Putrescine differently influences the effect of salt stress on polyamine metabolism and ethylene synthesis in rice cultivars differing in salt resistance	Gene expression followed by reverse transcription-PCR suggested that putrescine could have a post-translational impact on genes coding for ADC (ADCa) and ODC (ODCa and ODCb) but could induce a transcriptional activation of genes coding for PAO (PAOb) mainly in the shoot of salt-stressed plants
ODCb	Os02g0482400	LOC_Os02g28110	shoot	Putrescine differently influences the effect of salt stress on polyamine metabolism and ethylene synthesis in rice cultivars differing in salt resistance	Gene expression followed by reverse transcription-PCR suggested that putrescine could have a post-translational impact on genes coding for ADC (ADCa) and ODC (ODCa and ODCb) but could induce a transcriptional activation of genes coding for PAO (PAOb) mainly in the shoot of salt-stressed plants
ODCb	Os02g0482400	LOC_Os02g28110	salt	Putrescine differently influences the effect of salt stress on polyamine metabolism and ethylene synthesis in rice cultivars differing in salt resistance	Gene expression followed by reverse transcription-PCR suggested that putrescine could have a post-translational impact on genes coding for ADC (ADCa) and ODC (ODCa and ODCb) but could induce a transcriptional activation of genes coding for PAO (PAOb) mainly in the shoot of salt-stressed plants
OFP1	Os01g0226700	LOC_Os01g12690	leaf	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Overexpression of OFP1 led to enlarged leaf angles, reduced plant height, and altered grain shape, largely resembled DLT overexpression plants
OFP1	Os01g0226700	LOC_Os01g12690	transcription factor	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	In addition, we found OFP1 was greatly induced by BR treatment, and OsBZR1, the critical transcription factor of BR signaling, was physically associated with the OFP1 promoter
OFP1	Os01g0226700	LOC_Os01g12690	growth	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Moreover, we showed that gibberellin synthesis was greatly repressed in OFP1 overexpression plants, suggesting OFP1 participates in the inhibition of plant growth by high BR or elevated BR signaling
OFP1	Os01g0226700	LOC_Os01g12690	grain	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Overexpression of OFP1 led to enlarged leaf angles, reduced plant height, and altered grain shape, largely resembled DLT overexpression plants
OFP1	Os01g0226700	LOC_Os01g12690	grain	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Taken together, we identified OFP1 as an additional regulator of BR responses and revealed how BRs promote OFP1 at both transcription and protein levels to modulate plant architecture and grain morphology in rice
OFP1	Os01g0226700	LOC_Os01g12690	gibberellin	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Moreover, we showed that gibberellin synthesis was greatly repressed in OFP1 overexpression plants, suggesting OFP1 participates in the inhibition of plant growth by high BR or elevated BR signaling
OFP1	Os01g0226700	LOC_Os01g12690	cytoplasm	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	OFP1 was ubiquitously expressed and the protein was localized in both cytoplasm and nucleus
OFP1	Os01g0226700	LOC_Os01g12690	architecture	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Genetic analysis showed that the regulation of plant architecture by OFP1 depends on DLT function
OFP1	Os01g0226700	LOC_Os01g12690	architecture	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Taken together, we identified OFP1 as an additional regulator of BR responses and revealed how BRs promote OFP1 at both transcription and protein levels to modulate plant architecture and grain morphology in rice
OFP1	Os01g0226700	LOC_Os01g12690	BR	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	In addition, we found OFP1 was greatly induced by BR treatment, and OsBZR1, the critical transcription factor of BR signaling, was physically associated with the OFP1 promoter
OFP1	Os01g0226700	LOC_Os01g12690	BR	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Moreover, we showed that gibberellin synthesis was greatly repressed in OFP1 overexpression plants, suggesting OFP1 participates in the inhibition of plant growth by high BR or elevated BR signaling
OFP1	Os01g0226700	LOC_Os01g12690	BR	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Taken together, we identified OFP1 as an additional regulator of BR responses and revealed how BRs promote OFP1 at both transcription and protein levels to modulate plant architecture and grain morphology in rice
OFP1	Os01g0226700	LOC_Os01g12690	plant height	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Overexpression of OFP1 led to enlarged leaf angles, reduced plant height, and altered grain shape, largely resembled DLT overexpression plants
OFP1	Os01g0226700	LOC_Os01g12690	nucleus	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	OFP1 was ubiquitously expressed and the protein was localized in both cytoplasm and nucleus
OFP1	Os01g0226700	LOC_Os01g12690	BR signaling	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	In addition, we found OFP1 was greatly induced by BR treatment, and OsBZR1, the critical transcription factor of BR signaling, was physically associated with the OFP1 promoter
OFP1	Os01g0226700	LOC_Os01g12690	BR signaling	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Moreover, we showed that gibberellin synthesis was greatly repressed in OFP1 overexpression plants, suggesting OFP1 participates in the inhibition of plant growth by high BR or elevated BR signaling
OFP1	Os01g0226700	LOC_Os01g12690	Gibberellin	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Moreover, we showed that gibberellin synthesis was greatly repressed in OFP1 overexpression plants, suggesting OFP1 participates in the inhibition of plant growth by high BR or elevated BR signaling
OFP1	Os01g0226700	LOC_Os01g12690	Kinase	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Furthermore, we revealed that OFP1 directly interacts with GSK2 kinase, and inhibition of the kinase activity significantly promotes OFP1 protein accumulation in plant
OFP1	Os01g0226700	LOC_Os01g12690	plant architecture	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Genetic analysis showed that the regulation of plant architecture by OFP1 depends on DLT function
OFP1	Os01g0226700	LOC_Os01g12690	plant architecture	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Taken together, we identified OFP1 as an additional regulator of BR responses and revealed how BRs promote OFP1 at both transcription and protein levels to modulate plant architecture and grain morphology in rice
OFP1	Os01g0226700	LOC_Os01g12690	plant growth	Brassinosteroids Regulate OFP1, a DLT Interacting Protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Moreover, we showed that gibberellin synthesis was greatly repressed in OFP1 overexpression plants, suggesting OFP1 participates in the inhibition of plant growth by high BR or elevated BR signaling
OFP3	None	None	leaf	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	While knockout of OFP3 promoted rice seedling growth, overexpression of OFP3 led to strong BR insensitivity, which resulted in reduced plant height, leaf angle, and grain size
OFP3	None	None	grain	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	While knockout of OFP3 promoted rice seedling growth, overexpression of OFP3 led to strong BR insensitivity, which resulted in reduced plant height, leaf angle, and grain size
OFP3	None	None	seedling	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	While knockout of OFP3 promoted rice seedling growth, overexpression of OFP3 led to strong BR insensitivity, which resulted in reduced plant height, leaf angle, and grain size
OFP3	None	None	grain size	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	While knockout of OFP3 promoted rice seedling growth, overexpression of OFP3 led to strong BR insensitivity, which resulted in reduced plant height, leaf angle, and grain size
OFP3	None	None	brassinosteroid	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.
OFP3	None	None	BR	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	Here, we identified OFP3 (OVATE FAMILY PROTEIN 3) as an interactor of both GSK2 and DLT by yeast two-hybrid screening and demonstrated that OFP3 plays a distinctly negative role in BR responses
OFP3	None	None	BR	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	While knockout of OFP3 promoted rice seedling growth, overexpression of OFP3 led to strong BR insensitivity, which resulted in reduced plant height, leaf angle, and grain size
OFP3	None	None	BR	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	Moreover, treatment with either BR or bikinin, a GSK3-like kinase inhibitor, induced OFP3 depletion, whereas GSK2 or brassinazole, a BR synthesis inhibitor, promoted OFP3 accumulation
OFP3	None	None	Brassinosteroid	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.
OFP3	None	None	plant height	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	While knockout of OFP3 promoted rice seedling growth, overexpression of OFP3 led to strong BR insensitivity, which resulted in reduced plant height, leaf angle, and grain size
OFP3	None	None	Kinase	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	Moreover, treatment with either BR or bikinin, a GSK3-like kinase inhibitor, induced OFP3 depletion, whereas GSK2 or brassinazole, a BR synthesis inhibitor, promoted OFP3 accumulation
OFP3	None	None	kinase	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	Moreover, treatment with either BR or bikinin, a GSK3-like kinase inhibitor, induced OFP3 depletion, whereas GSK2 or brassinazole, a BR synthesis inhibitor, promoted OFP3 accumulation
OFP3	None	None	seedling growth	GSK2 Stabilizes OFP3 to Suppress Brassinosteroid Responses in Rice.	While knockout of OFP3 promoted rice seedling growth, overexpression of OFP3 led to strong BR insensitivity, which resulted in reduced plant height, leaf angle, and grain size
OgPAE1	Os11g0615700	LOC_Os11g40140	defense	Overexpression of OgPAE1 from wild rice confers fungal resistance against Botrytis cinerea	Expression of OgPAE1 is regulated by defense-related signaling chemicals such as cantharidin, endothall and jasmonic acid
OgPAE1	Os11g0615700	LOC_Os11g40140	jasmonic	Overexpression of OgPAE1 from wild rice confers fungal resistance against Botrytis cinerea	Expression of OgPAE1 is regulated by defense-related signaling chemicals such as cantharidin, endothall and jasmonic acid
OgPAE1	Os11g0615700	LOC_Os11g40140	jasmonic acid	Overexpression of OgPAE1 from wild rice confers fungal resistance against Botrytis cinerea	Expression of OgPAE1 is regulated by defense-related signaling chemicals such as cantharidin, endothall and jasmonic acid
OGR1	Os12g0270200	LOC_Os12g17080	growth	Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria	This mutation, named opaque and growth retardation 1 (ogr1), was generated by T-DNA insertion into a gene that encodes a pentatricopeptide repeat protein containing the DYW motif
OGR1	Os12g0270200	LOC_Os12g17080	growth	Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria	We conclude that OGR1 is essential for RNA editing in rice mitochondria and is required for normal growth and development
OGR1	Os12g0270200	LOC_Os12g17080	mitochondria	Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria	The OGR1-sGFP fusion protein is localized to mitochondria
OGR1	Os12g0270200	LOC_Os12g17080	mitochondria	Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria	We conclude that OGR1 is essential for RNA editing in rice mitochondria and is required for normal growth and development
OGR1	Os12g0270200	LOC_Os12g17080	mitochondria	Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria	Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria
OHK1	Os06g0183200	LOC_Os06g08450	megagametogenesis	Identification and characterization of cytokinin-signalling gene families in rice	Thus, OHK1 is likely to be a structural and functional orthologue of CKI1, and thus may play a role in megagametogenesis.
OHK2|OsHk3	Os01g0923700	LOC_Os01g69920	cytokinin	Functional identification of OsHk6 as a homotypic cytokinin receptor in rice with preferential affinity for iP	OsHk4 recognized trans-zeatin (tZ) and iP, while OsHk3 scarcely induced cytokinin signaling activity
OHK4	Os03g0717700	LOC_Os03g50860	CHASE domain	Identification and characterization of cytokinin-signalling gene families in rice	OHK2, OHK4 and OHK5 have two transmembrane domains which flank the CHASE domain.
OHP1|OsAHP1	Os08g0557700	LOC_Os08g44350	histidine phosphotransfer proteins	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis	LEPTO1 can interact with two rice authentic histidine phosphotransfer proteins, OsAHP1 and OsAHP2, via its DDK domain.
OHP2|OsAHP2	Os09g0567400	LOC_Os09g39400	histidine phosphotransfer proteins	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis	LEPTO1 can interact with two rice authentic histidine phosphotransfer proteins, OsAHP1 and OsAHP2, via its DDK domain.
OIP30	Os06g0186900	LOC_Os06g08770	pollen	OIP30, a RuvB-like DNA helicase 2, is a potential substrate for the pollen-predominant OsCPK25/26 in rice	Using yeast two-hybrid screening, we isolated OsCPK25/26-interacting protein 30 (OIP30), which is also predominantly expressed in pollen
OIP30	Os06g0186900	LOC_Os06g08770	pollen	OIP30, a RuvB-like DNA helicase 2, is a potential substrate for the pollen-predominant OsCPK25/26 in rice	OIP30 may be the potential downstream substrate for OsCPK25/26 in pollen
OIP30	Os06g0186900	LOC_Os06g08770	pollen	OIP30, a RuvB-like DNA helicase 2, is a potential substrate for the pollen-predominant OsCPK25/26 in rice	OIP30, a RuvB-like DNA helicase 2, is a potential substrate for the pollen-predominant OsCPK25/26 in rice
OLE16	Os04g0546500	LOC_Os04g46200	oil bodies	Different effects on triacylglycerol packaging to oil bodies in transgenic rice seeds by specifically eliminating one of their two oleosin isoforms	However, in vitro studies showed that either OLE16 or OLE18 could individually stabilize artificial oil bodies, although OLE16 seems to provide slightly better stability
OLE18	Os03g0699000	LOC_Os03g49190	oil bodies	Different effects on triacylglycerol packaging to oil bodies in transgenic rice seeds by specifically eliminating one of their two oleosin isoforms	However, in vitro studies showed that either OLE16 or OLE18 could individually stabilize artificial oil bodies, although OLE16 seems to provide slightly better stability
OM64	Os02g0754500	LOC_Os02g51810	resistance	Deficiency of Mitochondrial Outer Membrane Protein 64 Confers Rice Resistance to  Both Piercing-sucking and Chewing Insects in Rice.	The om64 mutant also showed enhanced resistance to SSB, a chewing insect, which was due to promotion of Jasmonic acid biosynthesis and related responses
OM64	Os02g0754500	LOC_Os02g51810	resistance	Deficiency of Mitochondrial Outer Membrane Protein 64 Confers Rice Resistance to  Both Piercing-sucking and Chewing Insects in Rice.	This study confirmed OM64 as a negative regulator  of rice herbivore resistance through regulating H2 O2 production
OM64	Os02g0754500	LOC_Os02g51810	resistance	Deficiency of Mitochondrial Outer Membrane Protein 64 Confers Rice Resistance to  Both Piercing-sucking and Chewing Insects in Rice.	OM64 is a potentially efficient candidate to improve BPH and SSB resistance through gene deletion
OM64	Os02g0754500	LOC_Os02g51810	mitochondria	Deficiency of Mitochondrial Outer Membrane Protein 64 Confers Rice Resistance to  Both Piercing-sucking and Chewing Insects in Rice.	Why the om64 mutant was resistant to both piercing-sucking and chewing  insects via a gene deficiency in mitochondria is discussed
OM64	Os02g0754500	LOC_Os02g51810	tolerance	Deficiency of Mitochondrial Outer Membrane Protein 64 Confers Rice Resistance to  Both Piercing-sucking and Chewing Insects in Rice.	OM64 protein is located in the outer mitochondrial membrane by subcellular localization and its deficiency constitutively activated H2 O2 signaling, which stimulated antibiosis and tolerance to BPH
OM64	Os02g0754500	LOC_Os02g51810	jasmonic	Deficiency of Mitochondrial Outer Membrane Protein 64 Confers Rice Resistance to  Both Piercing-sucking and Chewing Insects in Rice.	The om64 mutant also showed enhanced resistance to SSB, a chewing insect, which was due to promotion of Jasmonic acid biosynthesis and related responses
OM64	Os02g0754500	LOC_Os02g51810	jasmonic acid	Deficiency of Mitochondrial Outer Membrane Protein 64 Confers Rice Resistance to  Both Piercing-sucking and Chewing Insects in Rice.	The om64 mutant also showed enhanced resistance to SSB, a chewing insect, which was due to promotion of Jasmonic acid biosynthesis and related responses
OM64	Os02g0754500	LOC_Os02g51810	resistant	Deficiency of Mitochondrial Outer Membrane Protein 64 Confers Rice Resistance to  Both Piercing-sucking and Chewing Insects in Rice.	Why the om64 mutant was resistant to both piercing-sucking and chewing  insects via a gene deficiency in mitochondria is discussed
OM64	Os02g0754500	LOC_Os02g51810	insect	Deficiency of mitochondrial outer membrane protein 64 confers rice resistance to both piercing-sucking and chewing insects in rice	Deficiency of mitochondrial outer membrane protein 64 confers rice resistance to both piercing-sucking and chewing insects in rice
OM64	Os02g0754500	LOC_Os02g51810	insect	Deficiency of mitochondrial outer membrane protein 64 confers rice resistance to both piercing-sucking and chewing insects in rice	The om64 mutant also showed enhanced resistance to SSB, a chewing insect, which was due to promotion of Jasmonic acid biosynthesis and related responses.
OM64	Os02g0754500	LOC_Os02g51810	insect resistance	Deficiency of mitochondrial outer membrane protein 64 confers rice resistance to both piercing-sucking and chewing insects in rice	The om64 mutant also showed enhanced resistance to SSB, a chewing insect, which was due to promotion of Jasmonic acid biosynthesis and related responses.
OMTN1	Os02g0579000	LOC_Os02g36880	cold stress	Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice	Under cold stress, the expression levels of OMTN1 and OMTN2 were increased, while the expression levels of the other three genes (OMTN3, OMTN4, and OMTN6) did not change significantly.
OMTN3|OsNAC60	Os12g0610600	LOC_Os12g41680	drought resistance	Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice	Overexpression of OMTN2, OMTN3, OMTN4, and OMTN6 in rice led to negative effects on drought resistance at the reproductive stage.
OMTN3|OsNAC60	Os12g0610600	LOC_Os12g41680	transcription factor	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.	OsNAC60 encodes a transcription factor, over-expression of which enhanced defense responses, such as increased programmed cell death, greater ion leakage, more ROS accumulation and callose deposition, and up-regulation of defense-related genes
OMTN3|OsNAC60	Os12g0610600	LOC_Os12g41680	defense	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.	OsNAC60 encodes a transcription factor, over-expression of which enhanced defense responses, such as increased programmed cell death, greater ion leakage, more ROS accumulation and callose deposition, and up-regulation of defense-related genes
OMTN3|OsNAC60	Os12g0610600	LOC_Os12g41680	defense response	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.	OsNAC60 encodes a transcription factor, over-expression of which enhanced defense responses, such as increased programmed cell death, greater ion leakage, more ROS accumulation and callose deposition, and up-regulation of defense-related genes
OMTN3|OsNAC60	Os12g0610600	LOC_Os12g41680	blast	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.
OMTN3|OsNAC60	Os12g0610600	LOC_Os12g41680	magnaporthe oryzae	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.
OMTN3|OsNAC60	Os12g0610600	LOC_Os12g41680	cell death	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.	OsNAC60 encodes a transcription factor, over-expression of which enhanced defense responses, such as increased programmed cell death, greater ion leakage, more ROS accumulation and callose deposition, and up-regulation of defense-related genes
OMTN3|OsNAC60	Os12g0610600	LOC_Os12g41680	immunity	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.	Osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	drought resistance	Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice	Overexpression of OMTN2, OMTN3, OMTN4, and OMTN6 in rice led to negative effects on drought resistance at the reproductive stage.
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	leaf	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	leaf senescence	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	transcription factor	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	transcription factor	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	Here, we describe the identification and functional characterization of the NAC transcription factor gene, OsY37 (Oryza sativa Yellow37, ONAC011) obtained from Oryza sativa cv
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	senescence	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	senescence	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	The resulting transgenic plants overexpressing OsY37 gene showed early heading and precocious senescence phenotype of flag leaves compared with wild-type plants
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	senescence	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	Our results indicate that OsY37 acts as a positive regulator of heading and senescence during the reproductive phase in rice
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	grain	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	In addition, OsY37 may be involved in plant development and grain yield
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	development	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	In addition, OsY37 may be involved in plant development and grain yield
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	grain yield	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	In addition, OsY37 may be involved in plant development and grain yield
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	yield	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	In addition, OsY37 may be involved in plant development and grain yield
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	vegetative	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	Furthermore, knockdown of OsY37 expression caused dwarfism and high accumulation of chlorophyll during the vegetative phase
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	reproductive	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	Our results indicate that OsY37 acts as a positive regulator of heading and senescence during the reproductive phase in rice
OMTN4|ONAC011|OsY37	Os06g0675600	LOC_Os06g46270	plant development	The NAC Transcription Factor Gene OsY37 (ONAC011) Promotes Leaf Senescence and Accelerates Heading Time in Rice.	In addition, OsY37 may be involved in plant development and grain yield
OMTN6	Os08g0200600	LOC_Os08g10080	drought resistance	Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice	Overexpression of OMTN2, OMTN3, OMTN4, and OMTN6 in rice led to negative effects on drought resistance at the reproductive stage
ONAC020|OsNAC20	Os01g0104500	LOC_Os01g01470	nucleus	Three Rice NAC Transcription Factors Heteromerize and Are Associated with Seed Size.	Only ONAC026 is localized to the nucleus while ONAC020 and ONAC023 are targeted to the ER and cytoplasm, respectively
ONAC022	Os03g0133000	LOC_Os03g04070	drought	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
ONAC022	Os03g0133000	LOC_Os03g04070	drought	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Three independent transgenic rice lines with overexpression of ONAC022 were generated and used to explore the function of ONAC022 in drought and salt stress tolerance
ONAC022	Os03g0133000	LOC_Os03g04070	drought	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Our data demonstrate that ONAC022 functions as a stress-responsive NAC with transcriptional activator activity and plays a positive role in drought and salt stress tolerance through modulating an ABA-mediated pathway
ONAC022	Os03g0133000	LOC_Os03g04070	salt	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
ONAC022	Os03g0133000	LOC_Os03g04070	salt	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Three independent transgenic rice lines with overexpression of ONAC022 were generated and used to explore the function of ONAC022 in drought and salt stress tolerance
ONAC022	Os03g0133000	LOC_Os03g04070	salt	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Our data demonstrate that ONAC022 functions as a stress-responsive NAC with transcriptional activator activity and plays a positive role in drought and salt stress tolerance through modulating an ABA-mediated pathway
ONAC022	Os03g0133000	LOC_Os03g04070	tolerance	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
ONAC022	Os03g0133000	LOC_Os03g04070	tolerance	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Three independent transgenic rice lines with overexpression of ONAC022 were generated and used to explore the function of ONAC022 in drought and salt stress tolerance
ONAC022	Os03g0133000	LOC_Os03g04070	tolerance	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Our data demonstrate that ONAC022 functions as a stress-responsive NAC with transcriptional activator activity and plays a positive role in drought and salt stress tolerance through modulating an ABA-mediated pathway
ONAC022	Os03g0133000	LOC_Os03g04070	transcription factor	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
ONAC022	Os03g0133000	LOC_Os03g04070	salt tolerance	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
ONAC022	Os03g0133000	LOC_Os03g04070	salt stress	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Three independent transgenic rice lines with overexpression of ONAC022 were generated and used to explore the function of ONAC022 in drought and salt stress tolerance
ONAC022	Os03g0133000	LOC_Os03g04070	salt stress	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Our data demonstrate that ONAC022 functions as a stress-responsive NAC with transcriptional activator activity and plays a positive role in drought and salt stress tolerance through modulating an ABA-mediated pathway
ONAC022	Os03g0133000	LOC_Os03g04070	stress	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Three independent transgenic rice lines with overexpression of ONAC022 were generated and used to explore the function of ONAC022 in drought and salt stress tolerance
ONAC022	Os03g0133000	LOC_Os03g04070	stress	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Our data demonstrate that ONAC022 functions as a stress-responsive NAC with transcriptional activator activity and plays a positive role in drought and salt stress tolerance through modulating an ABA-mediated pathway
ONAC022	Os03g0133000	LOC_Os03g04070	nucleus	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	The ONAC022 protein was localized to nucleus when transiently expressed in Nicotiana benthamiana
ONAC022	Os03g0133000	LOC_Os03g04070	abscisic acid	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Expression of ONAC022 was induced by drought, high salinity, and abscisic acid (ABA)
ONAC022	Os03g0133000	LOC_Os03g04070	stress tolerance	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Three independent transgenic rice lines with overexpression of ONAC022 were generated and used to explore the function of ONAC022 in drought and salt stress tolerance
ONAC022	Os03g0133000	LOC_Os03g04070	stress tolerance	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Our data demonstrate that ONAC022 functions as a stress-responsive NAC with transcriptional activator activity and plays a positive role in drought and salt stress tolerance through modulating an ABA-mediated pathway
ONAC022	Os03g0133000	LOC_Os03g04070	transcriptional activator	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.	Our data demonstrate that ONAC022 functions as a stress-responsive NAC with transcriptional activator activity and plays a positive role in drought and salt stress tolerance through modulating an ABA-mediated pathway
ONAC023|OsNAC23	Os02g0214500	LOC_Os02g12310	seed	Three Rice NAC Transcription Factors Heteromerize and Are Associated with Seed Size.	In rice, three NAC TF encoding genes, namely ONAC020, ONAC026, and ONAC023 express specifically during seed development, at extremely high levels
ONAC023|OsNAC23	Os02g0214500	LOC_Os02g12310	nucleus	Three Rice NAC Transcription Factors Heteromerize and Are Associated with Seed Size.	Only ONAC026 is localized to the nucleus while ONAC020 and ONAC023 are targeted to the ER and cytoplasm, respectively
ONAC023|OsNAC23	Os02g0214500	LOC_Os02g12310	seed development	Three Rice NAC Transcription Factors Heteromerize and Are Associated with Seed Size.	In rice, three NAC TF encoding genes, namely ONAC020, ONAC026, and ONAC023 express specifically during seed development, at extremely high levels
ONAC023|OsNAC23	Os02g0214500	LOC_Os02g12310	transcription factor	The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice.	 Here, we report that the sugar-inducible rice NAC transcription factor OsNAC23 directly represses the transcription of the Tre6P phosphatase gene TPP1 to simultaneously elevate Tre6P and repress trehalose levels, thus facilitating carbon partitioning from source to sink organs
ONAC023|OsNAC23	Os02g0214500	LOC_Os02g12310	sugar	The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice.	 Importantly, plants over-expressing OsNAC23 exhibited an elevated photosynthetic rate, sugar transport, and sink organ size, which consistently increased rice yields by 13%-17% in three elite-variety backgrounds and two locations, suggesting that manipulation of OsNAC23 expression has great potential for rice improvement
ONAC023|OsNAC23	Os02g0214500	LOC_Os02g12310	organ size	The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice.	 Importantly, plants over-expressing OsNAC23 exhibited an elevated photosynthetic rate, sugar transport, and sink organ size, which consistently increased rice yields by 13%-17% in three elite-variety backgrounds and two locations, suggesting that manipulation of OsNAC23 expression has great potential for rice improvement
ONAC023|OsNAC23	Os02g0214500	LOC_Os02g12310	phosphatase	The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice.	 Here, we report that the sugar-inducible rice NAC transcription factor OsNAC23 directly represses the transcription of the Tre6P phosphatase gene TPP1 to simultaneously elevate Tre6P and repress trehalose levels, thus facilitating carbon partitioning from source to sink organs
ONAC023|OsNAC23	Os02g0214500	LOC_Os02g12310	sugar homeostasis	The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice	The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice
ONAC023|OsNAC23	Os02g0214500	LOC_Os02g12310	grain yield	The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice	The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice
ONAC026|OsNAC26	Os01g0393100	LOC_Os01g29840	nucleus	Three Rice NAC Transcription Factors Heteromerize and Are Associated with Seed Size.	Only ONAC026 is localized to the nucleus while ONAC020 and ONAC023 are targeted to the ER and cytoplasm, respectively
ONAC026|OsNAC26	Os01g0393100	LOC_Os01g29840	nucleus	Three Rice NAC Transcription Factors Heteromerize and Are Associated with Seed Size.	Interestingly, these two proteins interact with ONAC026 and the dimers localize in the nucleus
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	abiotic stress	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	In this study, a rice NAC gene, ONAC045, was functionally characterized, especially with regard to its role in abiotic stress resistance
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	temperature	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	Expression analysis revealed that ONAC045 was induced by drought, high salt, and low temperature stresses, and abscisic acid (ABA) treatment in leaves and roots
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	transcription factor	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	Together, these results suggest that ONAC045 encodes a novel stress-responsive NAC transcription factor and is potential useful for engineering drought and salt tolerant rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	root	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	Expression analysis revealed that ONAC045 was induced by drought, high salt, and low temperature stresses, and abscisic acid (ABA) treatment in leaves and roots
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	drought	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	Expression analysis revealed that ONAC045 was induced by drought, high salt, and low temperature stresses, and abscisic acid (ABA) treatment in leaves and roots
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	drought	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	Transgenic rice plants overexpressing ONAC045 showed enhanced tolerance to drought and salt treatments
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	drought	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	Together, these results suggest that ONAC045 encodes a novel stress-responsive NAC transcription factor and is potential useful for engineering drought and salt tolerant rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	Expression analysis revealed that ONAC045 was induced by drought, high salt, and low temperature stresses, and abscisic acid (ABA) treatment in leaves and roots
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	Transgenic rice plants overexpressing ONAC045 showed enhanced tolerance to drought and salt treatments
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance	Together, these results suggest that ONAC045 encodes a novel stress-responsive NAC transcription factor and is potential useful for engineering drought and salt tolerant rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	root	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Immunostaining showed that OsNAC45 was localized in all root cells and was mainly expressed in the stele
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	drought	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Knockout of OsNAC45 also resulted in more ROS accumulation in roots and increased sensitivity of rice to salt stress
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Results: Here, we found that ABA repressed, and NaCl promoted, the expression of OsNAC45 in roots
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Loss of OsNAC45 decreased the sensitivity of rice plants to ABA and over-expressing this gene had the opposite effect, which demonstrated that OsNAC45 played an important role during ABA signal responses
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	drought tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt stress	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Knockout of OsNAC45 also resulted in more ROS accumulation in roots and increased sensitivity of rice to salt stress
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	stress	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Knockout of OsNAC45 also resulted in more ROS accumulation in roots and increased sensitivity of rice to salt stress
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Results: Here, we found that ABA repressed, and NaCl promoted, the expression of OsNAC45 in roots
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Loss of OsNAC45 decreased the sensitivity of rice plants to ABA and over-expressing this gene had the opposite effect, which demonstrated that OsNAC45 played an important role during ABA signal responses
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	root	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Immunostaining showed that OsNAC45 was localized in all root cells and was mainly expressed in the stele
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	drought	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Knockout of OsNAC45 also resulted in more ROS accumulation in roots and increased sensitivity of rice to salt stress
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Conclusions: These results indicate that OsNAC45 plays vital roles in ABA signal responses and salt tolerance in rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Conclusions: These results indicate that OsNAC45 plays vital roles in ABA signal responses and salt tolerance in rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Results: Here, we found that ABA repressed, and NaCl promoted, the expression of OsNAC45 in roots
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Loss of OsNAC45 decreased the sensitivity of rice plants to ABA and over-expressing this gene had the opposite effect, which demonstrated that OsNAC45 played an important role during ABA signal responses
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Conclusions: These results indicate that OsNAC45 plays vital roles in ABA signal responses and salt tolerance in rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	drought tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Conclusions: These results indicate that OsNAC45 plays vital roles in ABA signal responses and salt tolerance in rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	salt stress	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Knockout of OsNAC45 also resulted in more ROS accumulation in roots and increased sensitivity of rice to salt stress
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	stress	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Knockout of OsNAC45 also resulted in more ROS accumulation in roots and increased sensitivity of rice to salt stress
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Results: Here, we found that ABA repressed, and NaCl promoted, the expression of OsNAC45 in roots
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Loss of OsNAC45 decreased the sensitivity of rice plants to ABA and over-expressing this gene had the opposite effect, which demonstrated that OsNAC45 played an important role during ABA signal responses
ONAC045|OsNAC45	Os11g0127600	LOC_Os11g03370	ABA	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Conclusions: These results indicate that OsNAC45 plays vital roles in ABA signal responses and salt tolerance in rice
ONAC063	Os08g0436700	LOC_Os08g33910	salinity	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	ONAC063 expression was not induced by high-temperature but highly induced by high-salinity in rice roots
ONAC063	Os08g0436700	LOC_Os08g33910	salinity	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	The seeds of ONAC063-expressing transgenic Arabidopsis showed enhanced tolerance to high-salinity and osmotic pressure
ONAC063	Os08g0436700	LOC_Os08g33910	salinity	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	Microarray and real-time reverse transcription-polymerase chain reaction analyses showed upregulated expression of some salinity-inducible genes, including the amylase gene AMY1, in ONAC063-expressing transgenic Arabidopsis
ONAC063	Os08g0436700	LOC_Os08g33910	salinity	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	Thus, ONAC063 may play an important role in eliciting responses to high-salinity stress
ONAC063	Os08g0436700	LOC_Os08g33910	seed	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	The seeds of ONAC063-expressing transgenic Arabidopsis showed enhanced tolerance to high-salinity and osmotic pressure
ONAC063	Os08g0436700	LOC_Os08g33910	salt	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis
ONAC063	Os08g0436700	LOC_Os08g33910	transcription factor	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	The rice cDNA inserted in R08946 encoded a NAC transcription factor, ONAC063
ONAC063	Os08g0436700	LOC_Os08g33910	salinity stress	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	Thus, ONAC063 may play an important role in eliciting responses to high-salinity stress
ONAC063	Os08g0436700	LOC_Os08g33910	temperature	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	ONAC063 expression was not induced by high-temperature but highly induced by high-salinity in rice roots
ONAC063	Os08g0436700	LOC_Os08g33910	root	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis	ONAC063 expression was not induced by high-temperature but highly induced by high-salinity in rice roots
ONAC083	Os04g0619000	LOC_Os04g52810	transcription factor	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.
ONAC083	Os04g0619000	LOC_Os04g52810	defense response	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	 Knockout of ONAC083 enhanced rice immunity against Magnaporthe oryzae, strengthened pathogen-induced defense responses, and boosted chitin-induced pattern-triggered immunity (PTI), whereas ONAC083 overexpression had the opposite effects
ONAC083	Os04g0619000	LOC_Os04g52810	defense	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	 Knockout of ONAC083 enhanced rice immunity against Magnaporthe oryzae, strengthened pathogen-induced defense responses, and boosted chitin-induced pattern-triggered immunity (PTI), whereas ONAC083 overexpression had the opposite effects
ONAC083	Os04g0619000	LOC_Os04g52810	nucleus	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	 ONAC083 localizes to the nucleus and exhibited transcriptional activation activity that depended on its C-terminal region
ONAC083	Os04g0619000	LOC_Os04g52810	immunity	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.
ONAC083	Os04g0619000	LOC_Os04g52810	immunity	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	 Knockout of ONAC083 enhanced rice immunity against Magnaporthe oryzae, strengthened pathogen-induced defense responses, and boosted chitin-induced pattern-triggered immunity (PTI), whereas ONAC083 overexpression had the opposite effects
ONAC083	Os04g0619000	LOC_Os04g52810	immunity	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	 These data demonstrate that ONAC083 negatively contributes to rice immunity against M
ONAC083	Os04g0619000	LOC_Os04g52810	magnaporthe oryzae	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.
ONAC083	Os04g0619000	LOC_Os04g52810	magnaporthe oryzae	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	 Knockout of ONAC083 enhanced rice immunity against Magnaporthe oryzae, strengthened pathogen-induced defense responses, and boosted chitin-induced pattern-triggered immunity (PTI), whereas ONAC083 overexpression had the opposite effects
ONAC095	Os06g0726300	LOC_Os06g51070	drought	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.
ONAC095	Os06g0726300	LOC_Os06g51070	drought	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Expression of ONAC095 was up-regulated by drought stress and abscisic acid (ABA) but down-regulated by cold stress
ONAC095	Os06g0726300	LOC_Os06g51070	drought	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Functional analyses through dominant chimeric repressor-mediated suppression of ONAC095 demonstrate that ONAC095 plays opposite roles in drought and cold stress tolerance, acting as a negative regulator of drought response but as a positive regulator of cold response in rice
ONAC095	Os06g0726300	LOC_Os06g51070	transcription factor	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.
ONAC095	Os06g0726300	LOC_Os06g51070	cold stress	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.
ONAC095	Os06g0726300	LOC_Os06g51070	cold stress	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Expression of ONAC095 was up-regulated by drought stress and abscisic acid (ABA) but down-regulated by cold stress
ONAC095	Os06g0726300	LOC_Os06g51070	cold stress	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Functional analyses through dominant chimeric repressor-mediated suppression of ONAC095 demonstrate that ONAC095 plays opposite roles in drought and cold stress tolerance, acting as a negative regulator of drought response but as a positive regulator of cold response in rice
ONAC095	Os06g0726300	LOC_Os06g51070	stress	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.
ONAC095	Os06g0726300	LOC_Os06g51070	stress	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Expression of ONAC095 was up-regulated by drought stress and abscisic acid (ABA) but down-regulated by cold stress
ONAC095	Os06g0726300	LOC_Os06g51070	stress	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Functional analyses through dominant chimeric repressor-mediated suppression of ONAC095 demonstrate that ONAC095 plays opposite roles in drought and cold stress tolerance, acting as a negative regulator of drought response but as a positive regulator of cold response in rice
ONAC095	Os06g0726300	LOC_Os06g51070	drought stress	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Expression of ONAC095 was up-regulated by drought stress and abscisic acid (ABA) but down-regulated by cold stress
ONAC095	Os06g0726300	LOC_Os06g51070	drought stress	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Expression of ONAC095 was up-regulated by drought stress and abscisic acid (ABA) but down-regulated by cold stress
ONAC095	Os06g0726300	LOC_Os06g51070	abscisic acid	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Expression of ONAC095 was up-regulated by drought stress and abscisic acid (ABA) but down-regulated by cold stress
ONAC095	Os06g0726300	LOC_Os06g51070	stress tolerance	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.
ONAC095	Os06g0726300	LOC_Os06g51070	stress tolerance	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	Functional analyses through dominant chimeric repressor-mediated suppression of ONAC095 demonstrate that ONAC095 plays opposite roles in drought and cold stress tolerance, acting as a negative regulator of drought response but as a positive regulator of cold response in rice
ONAC096	Os07g0138200	LOC_Os07g04560	leaf	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.
ONAC096	Os07g0138200	LOC_Os07g04560	leaf	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Here, we report that rice ONAC096 affects grain yield by regulating leaf senescence and panicle number
ONAC096	Os07g0138200	LOC_Os07g04560	leaf	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Two independent T-DNA insertion mutants (onac096-1 and onac096-2) with downregulated ONAC096 expression retained their green leaf color during natural senescence in the field, thus extending their photosynthetic capacity
ONAC096	Os07g0138200	LOC_Os07g04560	leaf	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Reverse-transcription quantitative PCR analysis showed that ONAC096 upregulated genes controlling chlorophyll degradation and leaf senescence
ONAC096	Os07g0138200	LOC_Os07g04560	leaf	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 ONAC096 mediates abscisic acid (ABA)-induced leaf senescence by upregulating the ABA signaling genes ABA INSENSITIVE5 and ENHANCED EM LEVEL
ONAC096	Os07g0138200	LOC_Os07g04560	leaf senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.
ONAC096	Os07g0138200	LOC_Os07g04560	leaf senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Here, we report that rice ONAC096 affects grain yield by regulating leaf senescence and panicle number
ONAC096	Os07g0138200	LOC_Os07g04560	leaf senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Reverse-transcription quantitative PCR analysis showed that ONAC096 upregulated genes controlling chlorophyll degradation and leaf senescence
ONAC096	Os07g0138200	LOC_Os07g04560	leaf senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 ONAC096 mediates abscisic acid (ABA)-induced leaf senescence by upregulating the ABA signaling genes ABA INSENSITIVE5 and ENHANCED EM LEVEL
ONAC096	Os07g0138200	LOC_Os07g04560	senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.
ONAC096	Os07g0138200	LOC_Os07g04560	senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Here, we report that rice ONAC096 affects grain yield by regulating leaf senescence and panicle number
ONAC096	Os07g0138200	LOC_Os07g04560	senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 ONAC096 expression increased rapidly in rice leaves upon the initiation of aging- and dark-induced senescence
ONAC096	Os07g0138200	LOC_Os07g04560	senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Two independent T-DNA insertion mutants (onac096-1 and onac096-2) with downregulated ONAC096 expression retained their green leaf color during natural senescence in the field, thus extending their photosynthetic capacity
ONAC096	Os07g0138200	LOC_Os07g04560	senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Reverse-transcription quantitative PCR analysis showed that ONAC096 upregulated genes controlling chlorophyll degradation and leaf senescence
ONAC096	Os07g0138200	LOC_Os07g04560	senescence	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 ONAC096 mediates abscisic acid (ABA)-induced leaf senescence by upregulating the ABA signaling genes ABA INSENSITIVE5 and ENHANCED EM LEVEL
ONAC096	Os07g0138200	LOC_Os07g04560	panicle	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.
ONAC096	Os07g0138200	LOC_Os07g04560	panicle	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Here, we report that rice ONAC096 affects grain yield by regulating leaf senescence and panicle number
ONAC096	Os07g0138200	LOC_Os07g04560	panicle	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Repressed OsCKX2 (encoding cytokinin oxidase/dehydrogenase) expression in the onac096 mutants led to a 15% increase in panicle number without affecting grain weight or fertility
ONAC096	Os07g0138200	LOC_Os07g04560	grain	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.
ONAC096	Os07g0138200	LOC_Os07g04560	grain	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Here, we report that rice ONAC096 affects grain yield by regulating leaf senescence and panicle number
ONAC096	Os07g0138200	LOC_Os07g04560	grain	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Repressed OsCKX2 (encoding cytokinin oxidase/dehydrogenase) expression in the onac096 mutants led to a 15% increase in panicle number without affecting grain weight or fertility
ONAC096	Os07g0138200	LOC_Os07g04560	grain	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 The onac096 mutants showed a 16% increase in grain yield, highlighting the potential for using this gene to increase grain production
ONAC096	Os07g0138200	LOC_Os07g04560	grain yield	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.
ONAC096	Os07g0138200	LOC_Os07g04560	grain yield	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Here, we report that rice ONAC096 affects grain yield by regulating leaf senescence and panicle number
ONAC096	Os07g0138200	LOC_Os07g04560	grain yield	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 The onac096 mutants showed a 16% increase in grain yield, highlighting the potential for using this gene to increase grain production
ONAC096	Os07g0138200	LOC_Os07g04560	yield	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.
ONAC096	Os07g0138200	LOC_Os07g04560	yield	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Here, we report that rice ONAC096 affects grain yield by regulating leaf senescence and panicle number
ONAC096	Os07g0138200	LOC_Os07g04560	 ABA 	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 ONAC096 mediates abscisic acid (ABA)-induced leaf senescence by upregulating the ABA signaling genes ABA INSENSITIVE5 and ENHANCED EM LEVEL
ONAC096	Os07g0138200	LOC_Os07g04560	cytokinin	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Repressed OsCKX2 (encoding cytokinin oxidase/dehydrogenase) expression in the onac096 mutants led to a 15% increase in panicle number without affecting grain weight or fertility
ONAC096	Os07g0138200	LOC_Os07g04560	abscisic acid	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 ONAC096 mediates abscisic acid (ABA)-induced leaf senescence by upregulating the ABA signaling genes ABA INSENSITIVE5 and ENHANCED EM LEVEL
ONAC096	Os07g0138200	LOC_Os07g04560	ABA	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 ONAC096 mediates abscisic acid (ABA)-induced leaf senescence by upregulating the ABA signaling genes ABA INSENSITIVE5 and ENHANCED EM LEVEL
ONAC096	Os07g0138200	LOC_Os07g04560	grain filling	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.
ONAC096	Os07g0138200	LOC_Os07g04560	fertility	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Repressed OsCKX2 (encoding cytokinin oxidase/dehydrogenase) expression in the onac096 mutants led to a 15% increase in panicle number without affecting grain weight or fertility
ONAC096	Os07g0138200	LOC_Os07g04560	grain weight	Mutation of ONAC096 Enhances Grain Yield by Increasing Panicle Number and Delaying Leaf Senescence during Grain Filling in Rice.	 Repressed OsCKX2 (encoding cytokinin oxidase/dehydrogenase) expression in the onac096 mutants led to a 15% increase in panicle number without affecting grain weight or fertility
ONAC096	Os07g0138200	LOC_Os07g04560	transcription factor	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.
ONAC096	Os07g0138200	LOC_Os07g04560	defense	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.	 RNA-seq transcriptomic profiling and qRT-PCR analysis identified a small set of defense and signaling genes that are putatively regulated by ONAC096, and further biochemical analysis validated that ONAC096 could directly bind to the promoters of OsRap2
ONAC096	Os07g0138200	LOC_Os07g04560	immunity	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.
ONAC096	Os07g0138200	LOC_Os07g04560	immunity	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.	 CRISPR/Cas9-mediated knockout of ONAC096 attenuated rice immunity and flg22-induced reactive oxygen species burst and expression of PTI marker genes OsWRKY45 and OsPAL4; by contrast, overexpression of ONAC096 enhanced rice immunity or flg22-induced PTI
ONAC096	Os07g0138200	LOC_Os07g04560	immunity	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.	 ONAC096 interacts with ONAC066, which is a positive regulator of rice immunity
ONAC096	Os07g0138200	LOC_Os07g04560	immunity	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.	 These results demonstrate that ONAC096 positively contributes to rice immunity against M
ONAC096	Os07g0138200	LOC_Os07g04560	reactive oxygen species	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.	 CRISPR/Cas9-mediated knockout of ONAC096 attenuated rice immunity and flg22-induced reactive oxygen species burst and expression of PTI marker genes OsWRKY45 and OsPAL4; by contrast, overexpression of ONAC096 enhanced rice immunity or flg22-induced PTI
ONAC096	Os07g0138200	LOC_Os07g04560	transcriptional activator	A Pathogen-Inducible Rice NAC Transcription Factor ONAC096 Contributes to Immunity Against Magnaprothe oryzae and Xanthomonas oryzae pv. oryzae by Direct Binding to the Promoters of OsRap2.6, OsWRKY62, and OsPAL1.	 ONAC096 had the DNA binding ability to NAC recognition sequence and was found to be a nucleus-localized transcriptional activator whose activity depended on its C-terminal
ONAC106	Os08g0433500	LOC_Os08g33670	leaf	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.
ONAC106	Os08g0433500	LOC_Os08g33670	leaf	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Here we show that the rice senNAC TF ONAC106 negatively regulates leaf senescence
ONAC106	Os08g0433500	LOC_Os08g33670	leaf	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Taking these results together, we propose that ONAC106 functions in leaf senescence, salt stress tolerance, and plant architecture by modulating the expression of its target genes that function in each signaling
ONAC106	Os08g0433500	LOC_Os08g33670	tiller	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.
ONAC106	Os08g0433500	LOC_Os08g33670	salt	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.
ONAC106	Os08g0433500	LOC_Os08g33670	salt	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Taking these results together, we propose that ONAC106 functions in leaf senescence, salt stress tolerance, and plant architecture by modulating the expression of its target genes that function in each signaling
ONAC106	Os08g0433500	LOC_Os08g33670	tolerance	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.
ONAC106	Os08g0433500	LOC_Os08g33670	salt tolerance	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.
ONAC106	Os08g0433500	LOC_Os08g33670	salt stress	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Taking these results together, we propose that ONAC106 functions in leaf senescence, salt stress tolerance, and plant architecture by modulating the expression of its target genes that function in each signaling
ONAC106	Os08g0433500	LOC_Os08g33670	architecture	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Taking these results together, we propose that ONAC106 functions in leaf senescence, salt stress tolerance, and plant architecture by modulating the expression of its target genes that function in each signaling
ONAC106	Os08g0433500	LOC_Os08g33670	stress	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Taking these results together, we propose that ONAC106 functions in leaf senescence, salt stress tolerance, and plant architecture by modulating the expression of its target genes that function in each signaling
ONAC106	Os08g0433500	LOC_Os08g33670	senescence	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.
ONAC106	Os08g0433500	LOC_Os08g33670	senescence	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Here we show that the rice senNAC TF ONAC106 negatively regulates leaf senescence
ONAC106	Os08g0433500	LOC_Os08g33670	senescence	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Leaves of onac106-1D (insertion of 35S enhancer in the promoter region of ONAC106 gene) mutants retained their green color under natural senescence and dark-induced senescence conditions
ONAC106	Os08g0433500	LOC_Os08g33670	leaf senescence	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.
ONAC106	Os08g0433500	LOC_Os08g33670	leaf senescence	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Here we show that the rice senNAC TF ONAC106 negatively regulates leaf senescence
ONAC106	Os08g0433500	LOC_Os08g33670	leaf senescence	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Taking these results together, we propose that ONAC106 functions in leaf senescence, salt stress tolerance, and plant architecture by modulating the expression of its target genes that function in each signaling
ONAC106	Os08g0433500	LOC_Os08g33670	stress tolerance	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Taking these results together, we propose that ONAC106 functions in leaf senescence, salt stress tolerance, and plant architecture by modulating the expression of its target genes that function in each signaling
ONAC106	Os08g0433500	LOC_Os08g33670	tiller angle	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.
ONAC106	Os08g0433500	LOC_Os08g33670	plant architecture	Rice ONAC106 inhibits leaf senescence and increases salt tolerance and tiller angle.	Taking these results together, we propose that ONAC106 functions in leaf senescence, salt stress tolerance, and plant architecture by modulating the expression of its target genes that function in each signaling
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	reproductive	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	More importantly, the RCc3:OsNAC10 plants showed significantly enhanced drought tolerance at the reproductive stage, increasing grain yield by 25% to 42% and by 5% to 14% over controls in the field under drought and normal conditions, respectively
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	jasmonate	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 were also induced by treatment with salicylic acid, methyl jasmonate or 1-aminocyclopropane-1-carboxylic acid (a precursor of ethylene)
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	defense	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Our results suggest that both ONAC122 and ONAC131 have important roles in rice disease resistance responses through the regulated expression of other defense- and signaling-related genes
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	defense	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	disease resistance	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Our results suggest that both ONAC122 and ONAC131 have important roles in rice disease resistance responses through the regulated expression of other defense- and signaling-related genes
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	transcription factor	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Here, we characterized two rice pathogen-responsive NAC transcription factors, ONAC122 and ONAC131
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	grain yield	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	More importantly, the RCc3:OsNAC10 plants showed significantly enhanced drought tolerance at the reproductive stage, increasing grain yield by 25% to 42% and by 5% to 14% over controls in the field under drought and normal conditions, respectively
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	grain yield	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Grain yield of GOS2:OsNAC10 plants in the field, in contrast, remained similar to that of controls under both normal and drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	grain yield	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overall, our results demonstrated that root-specific overexpression of OsNAC10 enlarges roots, enhancing drought tolerance of transgenic plants, which increases grain yield significantly under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	grain yield	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	temperature	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overexpression of OsNAC10 in rice under the control of the constitutive promoter GOS2 and the root-specific promoter RCc3 increased the plant tolerance to drought, high salinity, and low temperature at the vegetative stage
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	defense response	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	ethylene	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 were also induced by treatment with salicylic acid, methyl jasmonate or 1-aminocyclopropane-1-carboxylic acid (a precursor of ethylene)
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	meristem	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Here, we report the results of a functional genomics approach that identified a rice NAC (an acronym for NAM [No Apical Meristem], ATAF1-2, and CUC2 [Cup-Shaped Cotyledon]) domain gene, OsNAC10, which improved performance of transgenic rice plants under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	panicle	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	OsNAC10, one of the effective members selected from prescreening, is expressed predominantly in roots and panicles and induced by drought, high salinity, and abscisic acid
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	salicylic acid	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 were also induced by treatment with salicylic acid, methyl jasmonate or 1-aminocyclopropane-1-carboxylic acid (a precursor of ethylene)
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	blast disease	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 expression was induced after infection by Magnaporthe grisea, the causal agent of rice blast disease, and the M
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought tolerance	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	More importantly, the RCc3:OsNAC10 plants showed significantly enhanced drought tolerance at the reproductive stage, increasing grain yield by 25% to 42% and by 5% to 14% over controls in the field under drought and normal conditions, respectively
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought tolerance	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overall, our results demonstrated that root-specific overexpression of OsNAC10 enlarges roots, enhancing drought tolerance of transgenic plants, which increases grain yield significantly under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought tolerance	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	grain	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	More importantly, the RCc3:OsNAC10 plants showed significantly enhanced drought tolerance at the reproductive stage, increasing grain yield by 25% to 42% and by 5% to 14% over controls in the field under drought and normal conditions, respectively
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	grain	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Grain yield of GOS2:OsNAC10 plants in the field, in contrast, remained similar to that of controls under both normal and drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	grain	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overall, our results demonstrated that root-specific overexpression of OsNAC10 enlarges roots, enhancing drought tolerance of transgenic plants, which increases grain yield significantly under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	grain	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	blast	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 expression was induced after infection by Magnaporthe grisea, the causal agent of rice blast disease, and the M
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	vegetative	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overexpression of OsNAC10 in rice under the control of the constitutive promoter GOS2 and the root-specific promoter RCc3 increased the plant tolerance to drought, high salinity, and low temperature at the vegetative stage
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	root	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	OsNAC10, one of the effective members selected from prescreening, is expressed predominantly in roots and panicles and induced by drought, high salinity, and abscisic acid
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	root	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overexpression of OsNAC10 in rice under the control of the constitutive promoter GOS2 and the root-specific promoter RCc3 increased the plant tolerance to drought, high salinity, and low temperature at the vegetative stage
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	root	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	These differences in performance under field drought conditions reflect the differences in expression of OsNAC10-dependent target genes in roots as well as in leaves of the two transgenic plants, as revealed by microarray analyses
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	root	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Root diameter of the RCc3:OsNAC10 plants was thicker by 1
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	root	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overall, our results demonstrated that root-specific overexpression of OsNAC10 enlarges roots, enhancing drought tolerance of transgenic plants, which increases grain yield significantly under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	root	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	salinity	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	OsNAC10, one of the effective members selected from prescreening, is expressed predominantly in roots and panicles and induced by drought, high salinity, and abscisic acid
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	salinity	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overexpression of OsNAC10 in rice under the control of the constitutive promoter GOS2 and the root-specific promoter RCc3 increased the plant tolerance to drought, high salinity, and low temperature at the vegetative stage
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	disease	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 expression was induced after infection by Magnaporthe grisea, the causal agent of rice blast disease, and the M
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	disease	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Our results suggest that both ONAC122 and ONAC131 have important roles in rice disease resistance responses through the regulated expression of other defense- and signaling-related genes
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Here, we report the results of a functional genomics approach that identified a rice NAC (an acronym for NAM [No Apical Meristem], ATAF1-2, and CUC2 [Cup-Shaped Cotyledon]) domain gene, OsNAC10, which improved performance of transgenic rice plants under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	OsNAC10, one of the effective members selected from prescreening, is expressed predominantly in roots and panicles and induced by drought, high salinity, and abscisic acid
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overexpression of OsNAC10 in rice under the control of the constitutive promoter GOS2 and the root-specific promoter RCc3 increased the plant tolerance to drought, high salinity, and low temperature at the vegetative stage
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	More importantly, the RCc3:OsNAC10 plants showed significantly enhanced drought tolerance at the reproductive stage, increasing grain yield by 25% to 42% and by 5% to 14% over controls in the field under drought and normal conditions, respectively
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Grain yield of GOS2:OsNAC10 plants in the field, in contrast, remained similar to that of controls under both normal and drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	These differences in performance under field drought conditions reflect the differences in expression of OsNAC10-dependent target genes in roots as well as in leaves of the two transgenic plants, as revealed by microarray analyses
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overall, our results demonstrated that root-specific overexpression of OsNAC10 enlarges roots, enhancing drought tolerance of transgenic plants, which increases grain yield significantly under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	drought	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	yield	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	More importantly, the RCc3:OsNAC10 plants showed significantly enhanced drought tolerance at the reproductive stage, increasing grain yield by 25% to 42% and by 5% to 14% over controls in the field under drought and normal conditions, respectively
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	yield	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Grain yield of GOS2:OsNAC10 plants in the field, in contrast, remained similar to that of controls under both normal and drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	yield	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Overall, our results demonstrated that root-specific overexpression of OsNAC10 enlarges roots, enhancing drought tolerance of transgenic plants, which increases grain yield significantly under field drought conditions
ONAC122|OsNAC10	Os11g0126900	LOC_Os11g03300	yield	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions
ONAC127	Os11g0512100	LOC_Os11g31340	transcription factor	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Here, we report that two seed-specific NAM/ATAF/CUC domain transcription factors, ONAC127 and ONAC129, are responsive to heat stress and involved in the grain filling process of rice
ONAC127	Os11g0512100	LOC_Os11g31340	development	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC127	Os11g0512100	LOC_Os11g31340	grain	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Here, we report that two seed-specific NAM/ATAF/CUC domain transcription factors, ONAC127 and ONAC129, are responsive to heat stress and involved in the grain filling process of rice
ONAC127	Os11g0512100	LOC_Os11g31340	grain	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ONAC127 and ONAC129 are dominantly expressed in the pericarp and can form a heterodimer during rice grain filling
ONAC127	Os11g0512100	LOC_Os11g31340	grain	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC127	Os11g0512100	LOC_Os11g31340	seed	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC127	Os11g0512100	LOC_Os11g31340	abiotic stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC127	Os11g0512100	LOC_Os11g31340	stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Here, we report that two seed-specific NAM/ATAF/CUC domain transcription factors, ONAC127 and ONAC129, are responsive to heat stress and involved in the grain filling process of rice
ONAC127	Os11g0512100	LOC_Os11g31340	stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC127	Os11g0512100	LOC_Os11g31340	stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC127	Os11g0512100	LOC_Os11g31340	reproductive	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC127	Os11g0512100	LOC_Os11g31340	transporter	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ChIP-seq analysis identified that the direct targets of ONAC127 and ONAC129 in developing rice seeds include monosaccharide transporter OsMST6, sugar transporter OsSWEET4, calmodulin-like protein OsMSR2 and AP2/ERF factor OsEATB
ONAC127	Os11g0512100	LOC_Os11g31340	biotic stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC127	Os11g0512100	LOC_Os11g31340	sugar	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ChIP-seq analysis identified that the direct targets of ONAC127 and ONAC129 in developing rice seeds include monosaccharide transporter OsMST6, sugar transporter OsSWEET4, calmodulin-like protein OsMSR2 and AP2/ERF factor OsEATB
ONAC127	Os11g0512100	LOC_Os11g31340	sugar	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC127	Os11g0512100	LOC_Os11g31340	grain filling	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Here, we report that two seed-specific NAM/ATAF/CUC domain transcription factors, ONAC127 and ONAC129, are responsive to heat stress and involved in the grain filling process of rice
ONAC127	Os11g0512100	LOC_Os11g31340	grain filling	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ONAC127 and ONAC129 are dominantly expressed in the pericarp and can form a heterodimer during rice grain filling
ONAC127	Os11g0512100	LOC_Os11g31340	grain filling	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC127	Os11g0512100	LOC_Os11g31340	transcriptional regulator	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC127	Os11g0512100	LOC_Os11g31340	seed development	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC127	Os11g0512100	LOC_Os11g31340	pericarp	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ONAC127 and ONAC129 are dominantly expressed in the pericarp and can form a heterodimer during rice grain filling
ONAC127	Os11g0512100	LOC_Os11g31340	stress response	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC127	Os11g0512100	LOC_Os11g31340	stress response	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC127	Os11g0512100	LOC_Os11g31340	heat stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Here, we report that two seed-specific NAM/ATAF/CUC domain transcription factors, ONAC127 and ONAC129, are responsive to heat stress and involved in the grain filling process of rice
ONAC127	Os11g0512100	LOC_Os11g31340	heat stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC127	Os11g0512100	LOC_Os11g31340	Heat Stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Here, we report that two seed-specific NAM/ATAF/CUC domain transcription factors, ONAC127 and ONAC129, are responsive to heat stress and involved in the grain filling process of rice
ONAC127	Os11g0512100	LOC_Os11g31340	Heat Stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC127	Os11g0512100	LOC_Os11g31340	Heat Stress Response	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	development	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	grain	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ONAC127 and ONAC129 are dominantly expressed in the pericarp and can form a heterodimer during rice grain filling
ONAC129	Os11g0512600	LOC_Os11g31380	grain	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC129	Os11g0512600	LOC_Os11g31380	seed	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	abiotic stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC129	Os11g0512600	LOC_Os11g31380	stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC129	Os11g0512600	LOC_Os11g31380	stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	reproductive	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	transporter	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ChIP-seq analysis identified that the direct targets of ONAC127 and ONAC129 in developing rice seeds include monosaccharide transporter OsMST6, sugar transporter OsSWEET4, calmodulin-like protein OsMSR2 and AP2/ERF factor OsEATB
ONAC129	Os11g0512600	LOC_Os11g31380	biotic stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC129	Os11g0512600	LOC_Os11g31380	sugar	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ChIP-seq analysis identified that the direct targets of ONAC127 and ONAC129 in developing rice seeds include monosaccharide transporter OsMST6, sugar transporter OsSWEET4, calmodulin-like protein OsMSR2 and AP2/ERF factor OsEATB
ONAC129	Os11g0512600	LOC_Os11g31380	sugar	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC129	Os11g0512600	LOC_Os11g31380	grain filling	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ONAC127 and ONAC129 are dominantly expressed in the pericarp and can form a heterodimer during rice grain filling
ONAC129	Os11g0512600	LOC_Os11g31380	grain filling	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC129	Os11g0512600	LOC_Os11g31380	transcriptional regulator	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	seed development	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	pericarp	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ONAC127 and ONAC129 are dominantly expressed in the pericarp and can form a heterodimer during rice grain filling
ONAC129	Os11g0512600	LOC_Os11g31380	stress response	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	These results suggest that ONAC127 and ONAC129 may regulate grain filling through affecting sugar transportation and abiotic stress responses
ONAC129	Os11g0512600	LOC_Os11g31380	stress response	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	heat stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	Heat Stress	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC129	Os11g0512600	LOC_Os11g31380	Heat Stress Response	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	Overall, this study demonstrates a transcriptional regulatory network involving ONAC127 and ONAC129 and coordinating multiple pathways to modulate seed development and heat stress response at rice reproductive stage
ONAC131	Os12g0123700	LOC_Os12g03040	blast	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 expression was induced after infection by Magnaporthe grisea, the causal agent of rice blast disease, and the M
ONAC131	Os12g0123700	LOC_Os12g03040	blast disease	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 expression was induced after infection by Magnaporthe grisea, the causal agent of rice blast disease, and the M
ONAC131	Os12g0123700	LOC_Os12g03040	defense response	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea
ONAC131	Os12g0123700	LOC_Os12g03040	disease resistance	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Our results suggest that both ONAC122 and ONAC131 have important roles in rice disease resistance responses through the regulated expression of other defense- and signaling-related genes
ONAC131	Os12g0123700	LOC_Os12g03040	defense	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Our results suggest that both ONAC122 and ONAC131 have important roles in rice disease resistance responses through the regulated expression of other defense- and signaling-related genes
ONAC131	Os12g0123700	LOC_Os12g03040	defense	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea
ONAC131	Os12g0123700	LOC_Os12g03040	disease	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 expression was induced after infection by Magnaporthe grisea, the causal agent of rice blast disease, and the M
ONAC131	Os12g0123700	LOC_Os12g03040	disease	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Our results suggest that both ONAC122 and ONAC131 have important roles in rice disease resistance responses through the regulated expression of other defense- and signaling-related genes
ONAC131	Os12g0123700	LOC_Os12g03040	ethylene	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 were also induced by treatment with salicylic acid, methyl jasmonate or 1-aminocyclopropane-1-carboxylic acid (a precursor of ethylene)
ONAC131	Os12g0123700	LOC_Os12g03040	transcription factor	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	Here, we characterized two rice pathogen-responsive NAC transcription factors, ONAC122 and ONAC131
ONAC131	Os12g0123700	LOC_Os12g03040	jasmonate	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 were also induced by treatment with salicylic acid, methyl jasmonate or 1-aminocyclopropane-1-carboxylic acid (a precursor of ethylene)
ONAC131	Os12g0123700	LOC_Os12g03040	salicylic acid	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea	ONAC122 and ONAC131 were also induced by treatment with salicylic acid, methyl jasmonate or 1-aminocyclopropane-1-carboxylic acid (a precursor of ethylene)
ONAC300	Os12g0123800	LOC_Os12g03050	meristem	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	High levels of ONAC300 mRNA were detected by in situ hybridization in developing shoot apical meristem (SAM) and in the associated young leaves
ONAC300	Os12g0123800	LOC_Os12g03050	culm	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	RT-PCR analysis further revealed that the levels of ONAC300 transcripts were higher in leaves, roots and culms than in panicles
ONAC300	Os12g0123800	LOC_Os12g03050	flower	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	Thus, ONAC300 is a novel member of the NAC family which is expressed at very early developmental stages in the shoot, root and flower, as well as in the mature phloem of vascular tissues in rice
ONAC300	Os12g0123800	LOC_Os12g03050	panicle	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	RT-PCR analysis further revealed that the levels of ONAC300 transcripts were higher in leaves, roots and culms than in panicles
ONAC300	Os12g0123800	LOC_Os12g03050	shoot apical meristem	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	High levels of ONAC300 mRNA were detected by in situ hybridization in developing shoot apical meristem (SAM) and in the associated young leaves
ONAC300	Os12g0123800	LOC_Os12g03050	root	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	The use of an ONAC300:: GUS reporter gene revealed that the ONAC300 promoter was expressed predominantly in developing vascular tissues of the leaves and roots
ONAC300	Os12g0123800	LOC_Os12g03050	root	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	RT-PCR analysis further revealed that the levels of ONAC300 transcripts were higher in leaves, roots and culms than in panicles
ONAC300	Os12g0123800	LOC_Os12g03050	root	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	Thus, ONAC300 is a novel member of the NAC family which is expressed at very early developmental stages in the shoot, root and flower, as well as in the mature phloem of vascular tissues in rice
ONAC300	Os12g0123800	LOC_Os12g03050	shoot	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	High levels of ONAC300 mRNA were detected by in situ hybridization in developing shoot apical meristem (SAM) and in the associated young leaves
ONAC300	Os12g0123800	LOC_Os12g03050	shoot	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice	Thus, ONAC300 is a novel member of the NAC family which is expressed at very early developmental stages in the shoot, root and flower, as well as in the mature phloem of vascular tissues in rice
ONI1	Os03g0181500	LOC_Os03g08360	shoot	Fatty acid elongase is required for shoot development in rice	Here we show that the ONION1 (ONI1) gene, which encodes a fatty acid elongase (beta-ketoacyl CoA synthase) involved in the synthesis of very-long-chain fatty acids, is required for correct fatty acid composition and normal shoot development in rice
ONI1	Os03g0181500	LOC_Os03g08360	shoot	Fatty acid elongase is required for shoot development in rice	oni1 mutants containing a reduced amount of very-long-chain fatty acids produced very small shoots, with an aberrant outermost epidermal cell layer, and ceased to grow soon after germination
ONI1	Os03g0181500	LOC_Os03g08360	shoot	Fatty acid elongase is required for shoot development in rice	ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs
ONI1	Os03g0181500	LOC_Os03g08360	shoot apical meristem	Fatty acid elongase is required for shoot development in rice	ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs
ONI1	Os03g0181500	LOC_Os03g08360	meristem	Fatty acid elongase is required for shoot development in rice	ONI1 was specifically expressed in the outermost cell layer of the shoot apical meristem and developing lateral organs
ONI2	Os10g0416200	LOC_Os10g28060	leaf	ONION2 fatty acid elongase is required for shoot development in rice	The midrib of oni2 leaf blades was not developed correctly
ONI2	Os10g0416200	LOC_Os10g28060	shoot	ONION2 fatty acid elongase is required for shoot development in rice	onion2 (oni2) mutants produced very small shoots in which leaves were fused to each other, and ceased growing after germination
ONI2	Os10g0416200	LOC_Os10g28060	shoot	ONION2 fatty acid elongase is required for shoot development in rice	These results suggest that ONI2 is a layer 1-specific gene required for development of the entire shoot and that VLCFAs play an essential role in normal shoot development in rice
ONI3	Os09g0363900	LOC_Os09g19930	shoot	Organ fusion and defective shoot development in oni3 mutants of rice	Loss-of-function mutations of ONI3, which were identified as mutants with ectopic expression of KNOX genes in leaves and morphologically resembling KNOX overexpressors, showed abnormal organ fusions in developing shoots
ONI3	Os09g0363900	LOC_Os09g19930	shoot	Organ fusion and defective shoot development in oni3 mutants of rice	Expression analyses showed that ONI3 was specifically expressed in the outermost cell layer in the shoot apex throughout life cycle, and the oni3 mutants had an aberrant outermost cell layer
ONI3	Os09g0363900	LOC_Os09g19930	shoot	Organ fusion and defective shoot development in oni3 mutants of rice	Organ fusion and defective shoot development in oni3 mutants of rice
OOsRacGEF1|sRopGEF7B	Os01g0849100	LOC_Os01g62990	development	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	OsRopGEF7B plays roles in floral organ development in rice, affecting rice seed setting rate
OPR8	Os02g0559400	LOC_Os02g35310	jasmonic	Rice Rab11 is required for JA-mediated defense signaling	OsRab11 was expressed broadly in plants and both OsRab11 and OsOPR8 were induced by jasmonic acid (JA) and elicitor treatments
OPR8	Os02g0559400	LOC_Os02g35310	jasmonic acid	Rice Rab11 is required for JA-mediated defense signaling	OsRab11 was expressed broadly in plants and both OsRab11 and OsOPR8 were induced by jasmonic acid (JA) and elicitor treatments
OPR8	Os02g0559400	LOC_Os02g35310	defense	Rice Rab11 is required for JA-mediated defense signaling	In conclusion, OsRab11 may be required for JA-mediated defense signaling by activating the reducing activity of OsOPR8
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	leaf	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Histochemical activity of beta-glucuronidase in transgenic rice plants containing the promoter of OsTZF1 fused with beta-glucuronidase was observed in callus, coleoptile, young leaf, and panicle tissues
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	panicle	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Histochemical activity of beta-glucuronidase in transgenic rice plants containing the promoter of OsTZF1 fused with beta-glucuronidase was observed in callus, coleoptile, young leaf, and panicle tissues
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	root	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Promoter GUS analysis revealed that OsOPT7 expresses in root tips, root vascular tissue and shoots as well as during seed development
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	growth	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Furthermore OsOPT7 did not complement the growth of yeast fet3fet4 mutant
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	shoot	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Microarray analysis of OsOPT7 knockout 1 (opt7-1) revealed the upregulation of Fe-deficiency-responsive genes in plants grown under Fe-sufficient conditions, despite the high Fe and ferritin concentrations in shoot tissue indicating that Fe may not be available for physiological functions
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	seed	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Promoter GUS analysis revealed that OsOPT7 expresses in root tips, root vascular tissue and shoots as well as during seed development
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	homeostasis	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	development	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Promoter GUS analysis revealed that OsOPT7 expresses in root tips, root vascular tissue and shoots as well as during seed development
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	plasma membrane	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	OsOPT7 localized to the plasma membrane and did not transport Fe(III)-DMA or Fe(II)-NA and GSH in Xenopus laevis oocytes
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	seed development	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Promoter GUS analysis revealed that OsOPT7 expresses in root tips, root vascular tissue and shoots as well as during seed development
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	iron	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.
OPT|OsOPT7	Os03g0751100	LOC_Os03g54000	iron homeostasis	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.
ORF1	Os06g0208700	LOC_Os06g10650	salt stress	Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress	Taken together with gene function annotation and expression profiles, it indicates that ORF1 (LOC_Os06g10650), encoding a tyrosine phosphatase family protein might be the causal candidate gene for seed germination under salt stress in the qGR6.2 locus.
ORF1	Os06g0208700	LOC_Os06g10650	plant growth	Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress	As reported previously, PTP family proteins have been reported to regulate signal transduction and control plant growth and development [33], and the PHD finger has been identified as one of the major families of histone reader domains, being involved in recognition of methylated H3K4 [34], so we speculated ORF1 (LOC_Os06g10650) and ORF5 (LOC_Os06g10690) might play similar functions in rice.
ORF5	Os06g0209300	LOC_Os06g10690	plant growth	Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress	As reported previously, PTP family proteins have been reported to regulate signal transduction and control plant growth and development [33], and the PHD finger has been identified as one of the major families of histone reader domains, being involved in recognition of methylated H3K4 [34], so we speculated ORF1 (LOC_Os06g10650) and ORF5 (LOC_Os06g10690) might play similar functions in rice.
ORMDL	Os07g0452500	LOC_Os07g26940	pollen	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.
ORMDL	Os07g0452500	LOC_Os07g26940	pollen	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	We found that the RNAi transgenic plants with low expression of either LOC_Os07g26940 alone or all three ORMDL genes were sterile, having abnormal pollen morphology and staining
ORMDL	Os07g0452500	LOC_Os07g26940	pollen	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	Our results indicated that plant ORMDL proteins influence sphingolipid homeostasis, and deletion of this gene affected fertility resulting from abnormal pollen development
ORMDL	Os07g0452500	LOC_Os07g26940	development	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	Our results indicated that plant ORMDL proteins influence sphingolipid homeostasis, and deletion of this gene affected fertility resulting from abnormal pollen development
ORMDL	Os07g0452500	LOC_Os07g26940	homeostasis	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.
ORMDL	Os07g0452500	LOC_Os07g26940	fertility	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.
ORMDL	Os07g0452500	LOC_Os07g26940	fertility	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	Our results indicated that plant ORMDL proteins influence sphingolipid homeostasis, and deletion of this gene affected fertility resulting from abnormal pollen development
ORMDL	Os07g0452500	LOC_Os07g26940	pollen development	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.
ORMDL	Os07g0452500	LOC_Os07g26940	pollen development	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	Our results indicated that plant ORMDL proteins influence sphingolipid homeostasis, and deletion of this gene affected fertility resulting from abnormal pollen development
Orys1	Os03g0106900	LOC_Os03g01650	pollen	Cloning, expression and immunological characterization of Ory s 1, the major allergen of rice pollen	We have isolated and characterized a cDNA clone, Ory s 1, encoding a group-1 allergen of rice pollen. T
Orys1	Os03g0106900	LOC_Os03g01650	mature anthers	Cloning, expression and immunological characterization of Ory s 1, the major allergen of rice pollen	RNA gel blot analysis shows that the Ory s 1 gene is expressed in mature anthers, but not in vegetative or other floral tissues tested.
Orysa;NAP1;1|OsNAP1_L1	Os06g0149400	LOC_Os06g05660	cytoplasm	Interacting proteins and differences in nuclear transport reveal specific functions for the NAP1 family proteins in plants	Through treatment of tobacco cells with leptomycin B and mutagenesis of nuclear export signal, we demonstrated that Nicta;NAP1;1 and Orysa;NAP1;1 shuttle between the cytoplasm and the nucleus.
Orysa;NAP1;1|OsNAP1_L1	Os06g0149400	LOC_Os06g05660	nucleus	Interacting proteins and differences in nuclear transport reveal specific functions for the NAP1 family proteins in plants	Through treatment of tobacco cells with leptomycin B and mutagenesis of nuclear export signal, we demonstrated that Nicta;NAP1;1 and Orysa;NAP1;1 shuttle between the cytoplasm and the nucleus.
Orysa;NAP1;1|OsNAP1_L1	Os06g0149400	LOC_Os06g05660	nucleocytoplasmic shuttling protein	Interacting proteins and differences in nuclear transport reveal specific functions for the NAP1 family proteins in plants	Together, our results clearly show that Orysa;NAP1;1 is a nucleocytoplasmic shuttling protein.
Orysa;NAP1;2|OsNAP1_L2	Os05g0539700	LOC_Os05g46230	cytoplasm	Interacting proteins and differences in nuclear transport reveal specific functions for the NAP1 family proteins in plants	Interestingly, in spite of their high homology with the above NAP1 proteins, the other three tobacco proteins and Orysa;NAP1;2 did not show nucleocytoplasmic shuttling and were localized only in the cytoplasm.
Orysa;NAP1;3|OsNAP1_L3	Os01g0711800	LOC_Os01g51450	cytoplasm	Interacting proteins and differences in nuclear transport reveal specific functions for the NAP1 family proteins in plants	Moreover, Orysa;NAP1;3 that lacks a typical nuclear localization signal sequence was localized in both the cytoplasm and the nucleus.
Orysa;NAP1;3|OsNAP1_L3	Os01g0711800	LOC_Os01g51450	nucleus	Interacting proteins and differences in nuclear transport reveal specific functions for the NAP1 family proteins in plants	Moreover, Orysa;NAP1;3 that lacks a typical nuclear localization signal sequence was localized in both the cytoplasm and the nucleus.
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	leaf	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Whole-mount in situ hybridization revealed that in air-grown rice seedlings, OS-ACS5 was expressed at a low level in the shoot apex, meristems, leaf, and adventitious root primordia, and in vascular tissues of nonelongated stems and leaf sheaths
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	seedling	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Previously, the OS-ACS5 gene has been shown to be induced during short- as well as long-term complete submergence of seedlings and to be controlled by a balance of gibberellin and abscisic acid in both lowland and deepwater rice
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	seedling	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Whole-mount in situ hybridization revealed that in air-grown rice seedlings, OS-ACS5 was expressed at a low level in the shoot apex, meristems, leaf, and adventitious root primordia, and in vascular tissues of nonelongated stems and leaf sheaths
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	vegetative	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Our findings suggest that OS-ACS5 plays a role in vegetative growth of rice under normal conditions and is also recruited for enhanced growth upon complete submergence
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	growth	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Our findings suggest that OS-ACS5 plays a role in vegetative growth of rice under normal conditions and is also recruited for enhanced growth upon complete submergence
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	adventitious root	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Whole-mount in situ hybridization revealed that in air-grown rice seedlings, OS-ACS5 was expressed at a low level in the shoot apex, meristems, leaf, and adventitious root primordia, and in vascular tissues of nonelongated stems and leaf sheaths
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	shoot	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Whole-mount in situ hybridization revealed that in air-grown rice seedlings, OS-ACS5 was expressed at a low level in the shoot apex, meristems, leaf, and adventitious root primordia, and in vascular tissues of nonelongated stems and leaf sheaths
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	shoot	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	The possible implication of OS-ACS5 in root-shoot communication during submergence stress and its putative role in aerenchyma formation upon low-oxygen stress are discussed
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	gibberellin	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Previously, the OS-ACS5 gene has been shown to be induced during short- as well as long-term complete submergence of seedlings and to be controlled by a balance of gibberellin and abscisic acid in both lowland and deepwater rice
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	root	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Whole-mount in situ hybridization revealed that in air-grown rice seedlings, OS-ACS5 was expressed at a low level in the shoot apex, meristems, leaf, and adventitious root primordia, and in vascular tissues of nonelongated stems and leaf sheaths
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	root	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	The possible implication of OS-ACS5 in root-shoot communication during submergence stress and its putative role in aerenchyma formation upon low-oxygen stress are discussed
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	stem	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Whole-mount in situ hybridization revealed that in air-grown rice seedlings, OS-ACS5 was expressed at a low level in the shoot apex, meristems, leaf, and adventitious root primordia, and in vascular tissues of nonelongated stems and leaf sheaths
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	meristem	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Whole-mount in situ hybridization revealed that in air-grown rice seedlings, OS-ACS5 was expressed at a low level in the shoot apex, meristems, leaf, and adventitious root primordia, and in vascular tissues of nonelongated stems and leaf sheaths
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	submergence	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Previously, the OS-ACS5 gene has been shown to be induced during short- as well as long-term complete submergence of seedlings and to be controlled by a balance of gibberellin and abscisic acid in both lowland and deepwater rice
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	submergence	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	This study demonstrates that OS-ACS5 mRNA is localized in specific tissues and cells both during normal development and in response to complete submergence
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	submergence	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Our findings suggest that OS-ACS5 plays a role in vegetative growth of rice under normal conditions and is also recruited for enhanced growth upon complete submergence
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	submergence	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	The possible implication of OS-ACS5 in root-shoot communication during submergence stress and its putative role in aerenchyma formation upon low-oxygen stress are discussed
OS-ACS5|OsACS5	Os01g0192900	LOC_Os01g09700	sheath	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice	Whole-mount in situ hybridization revealed that in air-grown rice seedlings, OS-ACS5 was expressed at a low level in the shoot apex, meristems, leaf, and adventitious root primordia, and in vascular tissues of nonelongated stems and leaf sheaths
Os-CASTOR	Os03g0843600	LOC_Os03g62650	mycorrhizal symbiosis	Antiquity and function of CASTOR and POLLUX, the twin ion channel-encoding genes key to the evolution of root symbioses in plants	We demonstrate that the rice orthologs of CASTOR and POLLUX, namely Os-CASTOR and Os-POLLUX, are indispensable for mycorrhizal symbiosis in rice and that Os-POLLUX can restore nodulation, but not rhizobial infection, to a M. truncatula dmi1 mutant.
Os-CASTOR	Os03g0843600	LOC_Os03g62650	AM symbiosis	Antiquity and function of CASTOR and POLLUX, the twin ion channel-encoding genes key to the evolution of root symbioses in plants	Taken together, cytological and molecular evidence strongly indicates that Os-CASTOR and Os-POLLUX are required for the establishment of AM symbiosis in rice.
Os-eIF6;2	Os01g0280500	LOC_Os01g17330	nitrate	Characterization of plant eukaryotic translation initiation factor 6 (eIF6) genes: The essential role in embryogenesis and their differential expression in Arabidopsis and rice	Interestingly, the supply of ammonium nitrate as a plant nutrient was found to induce specifically the expression of Os-eIF6;2
Os-ERS1	Os03g0701700	LOC_Os03g49500	iaa	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Northern analysis revealed that the level of OS-ETR2 mRNA was markedly elevated either by the exogenous application of IAA or by ethylene treatment in young etiolated rice seedlings, whereas the OS-ERS1 transcript level was only slightly induced under the same experimental conditions
Os-ERS1	Os03g0701700	LOC_Os03g49500	iaa	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Pretreatment with silver prevented IAA-induced and ethylene-induced accumulation of both mRNAs (OS-ERS1 and OS-ETR2)
Os-ERS1	Os03g0701700	LOC_Os03g49500	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Five ethylene receptor genes, OS-ERS1, OS-ERS2, OS-ETR2, OS-ETR3, and OS-ETR4 were isolated and characterized from rice
Os-ERS1	Os03g0701700	LOC_Os03g49500	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Deduced amino acid sequences of OS-ERS1, OS-ERS2, OS-ETR2, OS-ETR3, and OS-ETR4 showed that they exhibited significant homology to the prokaryotic two-component signal transducer and a wide range of ethylene receptors in a variety of plant species
Os-ERS1	Os03g0701700	LOC_Os03g49500	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Northern analysis revealed that the level of OS-ETR2 mRNA was markedly elevated either by the exogenous application of IAA or by ethylene treatment in young etiolated rice seedlings, whereas the OS-ERS1 transcript level was only slightly induced under the same experimental conditions
Os-ERS1	Os03g0701700	LOC_Os03g49500	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Pretreatment with silver prevented IAA-induced and ethylene-induced accumulation of both mRNAs (OS-ERS1 and OS-ETR2)
Os-ERS1	Os03g0701700	LOC_Os03g49500	ethylene	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Analysis of the expression of the three ethylene receptor genes in different tissues of rice has unravelled their corresponding tissue-specificity in which OS-ERS1 was constitutively expressed in considerable amounts in all tissues studied, while OS-ERS2 and OS-ETR2 exhibited differential expression patterns in different tissues of rice
Os-ERS1	Os03g0701700	LOC_Os03g49500	seedling	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions	Northern analysis revealed that the level of OS-ETR2 mRNA was markedly elevated either by the exogenous application of IAA or by ethylene treatment in young etiolated rice seedlings, whereas the OS-ERS1 transcript level was only slightly induced under the same experimental conditions
Os-ERS1	Os03g0701700	LOC_Os03g49500	submergence	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	Our results and others support the notion that OsERS1 and OsETR2 could have different roles during rice plant submergence
Os-ERS1	Os03g0701700	LOC_Os03g49500	ethylene	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.
Os-ERS1	Os03g0701700	LOC_Os03g49500	ethylene	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	OsERS1 and OsETR2 are major ethylene receptors in rice that have been reported to have different regulatory functions
Os-ERS1	Os03g0701700	LOC_Os03g49500	plasma membrane	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	Base on the results, we suggested that OsERS1 could be localized to plasma membranes, whereas OsETR2 could be localized to the endoplasmic reticulum
Os-LBD37	Os03g0445700	LOC_Os03g33090	nitrogen	Metabolomic screening applied to rice FOX Arabidopsis lines leads to the identification of a gene-changing nitrogen metabolism	Furthermore, the metabolomic and transcriptomic analysis of the Os-LBD37/ASL39-overexpressing rice plants indicated that Os-LBD37/ASL39 is associated with processes related to nitrogen metabolism in rice
Os-POLLUX	Os01g0870100	LOC_Os01g64980	mycorrhizal symbiosis	Antiquity and function of CASTOR and POLLUX, the twin ion channel-encoding genes key to the evolution of root symbioses in plants	Using rice (Oryza sativa) as a study system, we employ reverse genetic tools (knockout mutants and RNA interference) to demonstrate that Os-CASTOR and Os-POLLUX are indispensable for mycorrhizal symbiosis in rice.
Os_SMK1|Os_Smk1|SMK1	Os11g0213500	LOC_Os11g10740	seed phenotype	Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa)	This result indicates that the loss of Os_Smk1 function in rice causes a chalky and shrunken seed phenotype, similar to the small kernel phenotype in smk1 mutants in maize.
Os_SMK1|Os_Smk1|SMK1	Os11g0213500	LOC_Os11g10740	seed development	Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa)	The mutant phenotypic analysis indicates that Os_Smk1 is required for seed development in rice.
Os1-CysPrxA	Os07g0638300	LOC_Os07g44430	root	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os1-CysPrxA	Os07g0638300	LOC_Os07g44430	development	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os1-CysPrxA	Os07g0638300	LOC_Os07g44430	root development	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os1-CysPrxA	Os07g0638300	LOC_Os07g44430	endosperm	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os1-CysPrxA	Os07g0638300	LOC_Os07g44430	endosperm development	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os1-CysPrxB	Os07g0638400	LOC_Os07g44440	root	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os1-CysPrxB	Os07g0638400	LOC_Os07g44440	development	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os1-CysPrxB	Os07g0638400	LOC_Os07g44440	root development	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os1-CysPrxB	Os07g0638400	LOC_Os07g44440	endosperm	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os1-CysPrxB	Os07g0638400	LOC_Os07g44440	endosperm development	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Our GUS expression data from developing seeds and those that were germinating indicated that Os1-CysPrxB is involved in root development, as initiated from the embryo, while Os1-CysPrxA has roles in regulating endosperm development near the aleurone layer
Os11Gsk	Os11g0308100	LOC_Os11g20310	yield	Os11Gsk gene from a wild rice, Oryza rufipogon improves yield in rice	Three sister lines of IL50-7 yielding higher than KMR3 showed presence of Os11Gsk, whereas the gene was absent in three other ILs from the same cross having lower yield than KMR3, indicating an association of the presence of Os11Gsk with high yield
Os11Gsk	Os11g0308100	LOC_Os11g20310	yield	Os11Gsk gene from a wild rice, Oryza rufipogon improves yield in rice	Thus, we show that Os11Gsk is a wild rice-derived gene introduced in KMR3 background and increases yield either by regulating expression of functional genes sharing homology with it or by causing epigenetic modifications in the introgression line
Os11Gsk	Os11g0308100	LOC_Os11g20310	yield	Os11Gsk gene from a wild rice, Oryza rufipogon improves yield in rice	Os11Gsk gene from a wild rice, Oryza rufipogon improves yield in rice
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistance	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistance	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	We show that this allele, which we call xa41(t), confers resistance against half of the tested Xoo strains representative of various geographic origins and genetic lineages, highlighting the selective pressure for the pathogen to accommodate with OsSWEET14 polymorphism and reciprocally the apparent limited possibilities for the host to create variability at this particular S gene
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	transporter	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	In a proof-of-principle experiment, we screened a germplasm of 169 rice accessions for polymorphism in the promoter of the major bacterial blight susceptibility (S) gene OsSWEET14 which encodes a sugar transporter targeted by numerous strains of X
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	 xoo 	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	We show that this allele, which we call xa41(t), confers resistance against half of the tested Xoo strains representative of various geographic origins and genetic lineages, highlighting the selective pressure for the pathogen to accommodate with OsSWEET14 polymorphism and reciprocally the apparent limited possibilities for the host to create variability at this particular S gene
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	blight	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	blight	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	In a proof-of-principle experiment, we screened a germplasm of 169 rice accessions for polymorphism in the promoter of the major bacterial blight susceptibility (S) gene OsSWEET14 which encodes a sugar transporter targeted by numerous strains of X
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	sugar	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	In a proof-of-principle experiment, we screened a germplasm of 169 rice accessions for polymorphism in the promoter of the major bacterial blight susceptibility (S) gene OsSWEET14 which encodes a sugar transporter targeted by numerous strains of X
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	bacterial blight	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	bacterial blight	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	In a proof-of-principle experiment, we screened a germplasm of 169 rice accessions for polymorphism in the promoter of the major bacterial blight susceptibility (S) gene OsSWEET14 which encodes a sugar transporter targeted by numerous strains of X
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistance	Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors.	Surprisingly, although indels within TalC EBE prevented OsSWEET14 induction in response to BAI3 wild-type bacteria relying on TalC, loss of TalC-responsiveness failed to confer resistance to this strain
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistance	Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae.	Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae.
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	leaf	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 Moreover, the expression of OsSWEET14 was detected in vascular tissues, including the stem, leaf sheath, leaf blade and root
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	root	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 Moreover, the expression of OsSWEET14 was detected in vascular tissues, including the stem, leaf sheath, leaf blade and root
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistance	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistance	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	   Conclusions: Disruption of OsSWEET14 in the Zhonghua 11 background is able to confer strong resistance to African Xoo strain AXO1947 and Asian Xoo strain PXO86
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	yield	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	yield	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 The disruption of OsSWEET14 led to increased plant height without a reduction in yield
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	breeding	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 The genetic background and increased plant height need to be taken into consideration when utilizing OsSWEET14 for resistant rice breeding
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	height	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 The disruption of OsSWEET14 led to increased plant height without a reduction in yield
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	height	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 The genetic background and increased plant height need to be taken into consideration when utilizing OsSWEET14 for resistant rice breeding
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	plant height	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 The disruption of OsSWEET14 led to increased plant height without a reduction in yield
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	plant height	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 The genetic background and increased plant height need to be taken into consideration when utilizing OsSWEET14 for resistant rice breeding
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	 xoo 	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 However, the OsSWEET14 single knockout or promoter mutants in the Kitaake background are moderately resistant or even susceptible to African Xoo strains
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	 xoo 	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	   Conclusions: Disruption of OsSWEET14 in the Zhonghua 11 background is able to confer strong resistance to African Xoo strain AXO1947 and Asian Xoo strain PXO86
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistant	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 However, the OsSWEET14 single knockout or promoter mutants in the Kitaake background are moderately resistant or even susceptible to African Xoo strains
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistant	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty 	 The genetic background and increased plant height need to be taken into consideration when utilizing OsSWEET14 for resistant rice breeding
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	development	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 Both OsSWEET14 and OsSWEET11 exhibited distinct spatiotemporal expression patterns between the early stage of caryopsis development and the rapid grain-filling stage
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 These results demonstrate that OsSWEET14 plays an important role in grain filling, and they suggest that four major apoplasmic pathways supply sucrose to the endosperm during the rapid grain-filling stage via the sucrose effluxers SWEET14 and SWEET11
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	starch	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	endosperm	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 These results demonstrate that OsSWEET14 plays an important role in grain filling, and they suggest that four major apoplasmic pathways supply sucrose to the endosperm during the rapid grain-filling stage via the sucrose effluxers SWEET14 and SWEET11
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 These results demonstrate that OsSWEET14 plays an important role in grain filling, and they suggest that four major apoplasmic pathways supply sucrose to the endosperm during the rapid grain-filling stage via the sucrose effluxers SWEET14 and SWEET11
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain weight	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	sucrose	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 These results demonstrate that OsSWEET14 plays an important role in grain filling, and they suggest that four major apoplasmic pathways supply sucrose to the endosperm during the rapid grain-filling stage via the sucrose effluxers SWEET14 and SWEET11
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	pericarp	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain-filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain-filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 Both OsSWEET14 and OsSWEET11 exhibited distinct spatiotemporal expression patterns between the early stage of caryopsis development and the rapid grain-filling stage
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain-filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 During the rapid grain-filling stage, OsSWEET14 and OsSWEET11 localized to four key sites: vascular parenchyma cells, the nucellar projection, the nucellar epidermis, and cross cells
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	grain-filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 These results demonstrate that OsSWEET14 plays an important role in grain filling, and they suggest that four major apoplasmic pathways supply sucrose to the endosperm during the rapid grain-filling stage via the sucrose effluxers SWEET14 and SWEET11
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	leaf	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistance	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	resistance	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	 Importantly, one of these T2 lines, harboring the largest homozygous 6-bp deletion, displayed decreased OsSWEET14 expression as well as a significantly reduced susceptibility to a Vietnamese Xoo strains and complete resistance to another one
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	disease	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	disease	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	 To investigate if this induction is connected with disease susceptibility, nine TBR225 mutant lines with mutations in the AvrXa7, PthXo3 or TalF TALEs DNA target sequences of the OsSWEET14 promoter were obtained using the CRISPR/Cas9 editing system
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	disease resistance	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	blight	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	sugar	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	 OsSWEET14 belongs to the SWEET gene family that encodes sugar transporters
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	 xoo 	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	 First, two Vietnamese Xoo strains were shown to up-regulate OsSWEET14 upon TBR225 infection
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	 xoo 	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	 Importantly, one of these T2 lines, harboring the largest homozygous 6-bp deletion, displayed decreased OsSWEET14 expression as well as a significantly reduced susceptibility to a Vietnamese Xoo strains and complete resistance to another one
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	blight disease	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	starch	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 Moreover, carbohydrate distribution was changed, leading to the accumulation of sucrose and starch in the leaves containing ossac3 on account of decreased expression of OsSWEET3a, OsSWEET6a and OsSWEET14 and oxidized inactivation of starch degradation enzymes in ossac3
Os11N3|OsSWEET14	Os11g0508600	LOC_Os11g31190	sucrose	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 Moreover, carbohydrate distribution was changed, leading to the accumulation of sucrose and starch in the leaves containing ossac3 on account of decreased expression of OsSWEET3a, OsSWEET6a and OsSWEET14 and oxidized inactivation of starch degradation enzymes in ossac3
Os12BGlu38	Os12g0420100	LOC_Os12g23170	pollen	Rice β-Glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and Pollen Fertility.	Rice β-Glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and Pollen Fertility.
Os12BGlu38	Os12g0420100	LOC_Os12g23170	pollen	Rice β-Glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and Pollen Fertility.	Histochemical staining and transmission electron microscopy showed that mutant pollen lacked intine cell wall, which was rescued by introduction of WT Os12BGlu38 genomic DNA
Os12BGlu38	Os12g0420100	LOC_Os12g23170	cell wall	Rice β-Glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and Pollen Fertility.	Rice β-Glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and Pollen Fertility.
Os12BGlu38	Os12g0420100	LOC_Os12g23170	cell wall	Rice β-Glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and Pollen Fertility.	Histochemical staining and transmission electron microscopy showed that mutant pollen lacked intine cell wall, which was rescued by introduction of WT Os12BGlu38 genomic DNA
Os12BGlu38	Os12g0420100	LOC_Os12g23170	plasma membrane	Rice β-Glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and Pollen Fertility.	Os12BGlu38 fused with green fluorescent protein was localized to the plasma membrane (PM) in rice and tobacco
Os12BGlu38	Os12g0420100	LOC_Os12g23170	Pollen Fertility	Rice Glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and Pollen Fertility	Rice Glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and Pollen Fertility
Os1BGlu4	Os01g0897600	LOC_Os01g67220	leaf	Recombinant expression and characterization of the cytoplasmic rice β-glucosidase Os1BGlu4.	Fluorescence microscopy of maize protoplasts and tobacco leaf cells expressing green fluorescent protein-tagged Os1BGlu4 confirmed the cytoplasmic localization
Os1BGlu4	Os01g0897600	LOC_Os01g67220	cytoplasm	Recombinant expression and characterization of the cytoplasmic rice β-glucosidase Os1BGlu4.	The Os1BGlu4 β-glucosidase is the only glycoside hydrolase family 1 member in rice that is predicted to be localized in the cytoplasm
Os2H16	Os06g0316000	LOC_Os06g21110	stress	OsASR2 regulates the expression of a defense-related gene, Os2H16, by targeting the GT-1 cis-element.	Here, we conducted a promoter assay of Os2H16 and identified GT-1 as an important cis-element that mediates Os2H16 expression in response to pathogen attack and osmotic stress
Os2H16	Os06g0316000	LOC_Os06g21110	pathogen	OsASR2 regulates the expression of a defense-related gene, Os2H16, by targeting the GT-1 cis-element.	Here, we conducted a promoter assay of Os2H16 and identified GT-1 as an important cis-element that mediates Os2H16 expression in response to pathogen attack and osmotic stress
Os2H16	Os06g0316000	LOC_Os06g21110	resistance	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice
Os2H16	Os06g0316000	LOC_Os06g21110	sheath	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	In comparison with wild-type rice, transgenic lines overexpressing Os2H16 show enhanced tolerance to bacterial blight and sheath blight disease, respectively caused by Xanthomonas oryzae pv
Os2H16	Os06g0316000	LOC_Os06g21110	defense	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	To further investigate the role of Os2H16 in plant defense responses to abiotic and biotic stresses, transgenic lines of rice were developed
Os2H16	Os06g0316000	LOC_Os06g21110	defense	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Our study provides the first functional characterization of the rice Os2H16 gene, and suggests that Os2H16 positively modulate plant defense to abiotic and biotic stress
Os2H16	Os06g0316000	LOC_Os06g21110	drought	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice
Os2H16	Os06g0316000	LOC_Os06g21110	drought	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	In this study, expression patterns of Os2H16 were analyzed, demonstrating that expression of Os2H16 was dramatically induced by both bacterial and fungal infection as well as by drought stress, but repressed by salt treatment
Os2H16	Os06g0316000	LOC_Os06g21110	drought	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	We also show that Os2H16 overexpression lines display enhanced tolerance to drought stress and elevated induction of drought-related genes, compared to wild-type rice
Os2H16	Os06g0316000	LOC_Os06g21110	drought	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Os2H16 knockdown lines were more sensitive to drought stress and exhibited reduced induction of drought-related genes
Os2H16	Os06g0316000	LOC_Os06g21110	salt	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	In this study, expression patterns of Os2H16 were analyzed, demonstrating that expression of Os2H16 was dramatically induced by both bacterial and fungal infection as well as by drought stress, but repressed by salt treatment
Os2H16	Os06g0316000	LOC_Os06g21110	tolerance	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice
Os2H16	Os06g0316000	LOC_Os06g21110	tolerance	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	In comparison with wild-type rice, transgenic lines overexpressing Os2H16 show enhanced tolerance to bacterial blight and sheath blight disease, respectively caused by Xanthomonas oryzae pv
Os2H16	Os06g0316000	LOC_Os06g21110	tolerance	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	We also show that Os2H16 overexpression lines display enhanced tolerance to drought stress and elevated induction of drought-related genes, compared to wild-type rice
Os2H16	Os06g0316000	LOC_Os06g21110	defense response	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	To further investigate the role of Os2H16 in plant defense responses to abiotic and biotic stresses, transgenic lines of rice were developed
Os2H16	Os06g0316000	LOC_Os06g21110	stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice
Os2H16	Os06g0316000	LOC_Os06g21110	stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	We also show that Os2H16 overexpression lines display enhanced tolerance to drought stress and elevated induction of drought-related genes, compared to wild-type rice
Os2H16	Os06g0316000	LOC_Os06g21110	stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Os2H16 knockdown lines were more sensitive to drought stress and exhibited reduced induction of drought-related genes
Os2H16	Os06g0316000	LOC_Os06g21110	stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Our study provides the first functional characterization of the rice Os2H16 gene, and suggests that Os2H16 positively modulate plant defense to abiotic and biotic stress
Os2H16	Os06g0316000	LOC_Os06g21110	biotic stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	To further investigate the role of Os2H16 in plant defense responses to abiotic and biotic stresses, transgenic lines of rice were developed
Os2H16	Os06g0316000	LOC_Os06g21110	biotic stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Our study provides the first functional characterization of the rice Os2H16 gene, and suggests that Os2H16 positively modulate plant defense to abiotic and biotic stress
Os2H16	Os06g0316000	LOC_Os06g21110	blight	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	In comparison with wild-type rice, transgenic lines overexpressing Os2H16 show enhanced tolerance to bacterial blight and sheath blight disease, respectively caused by Xanthomonas oryzae pv
Os2H16	Os06g0316000	LOC_Os06g21110	drought stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice
Os2H16	Os06g0316000	LOC_Os06g21110	drought stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	In this study, expression patterns of Os2H16 were analyzed, demonstrating that expression of Os2H16 was dramatically induced by both bacterial and fungal infection as well as by drought stress, but repressed by salt treatment
Os2H16	Os06g0316000	LOC_Os06g21110	drought stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	We also show that Os2H16 overexpression lines display enhanced tolerance to drought stress and elevated induction of drought-related genes, compared to wild-type rice
Os2H16	Os06g0316000	LOC_Os06g21110	drought stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Os2H16 knockdown lines were more sensitive to drought stress and exhibited reduced induction of drought-related genes
Os2H16	Os06g0316000	LOC_Os06g21110	drought stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice
Os2H16	Os06g0316000	LOC_Os06g21110	drought stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	We also show that Os2H16 overexpression lines display enhanced tolerance to drought stress and elevated induction of drought-related genes, compared to wild-type rice
Os2H16	Os06g0316000	LOC_Os06g21110	drought stress	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Os2H16 knockdown lines were more sensitive to drought stress and exhibited reduced induction of drought-related genes
Os2H16	Os06g0316000	LOC_Os06g21110	bacterial blight	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	In comparison with wild-type rice, transgenic lines overexpressing Os2H16 show enhanced tolerance to bacterial blight and sheath blight disease, respectively caused by Xanthomonas oryzae pv
Os2H16	Os06g0316000	LOC_Os06g21110	blight disease	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	In comparison with wild-type rice, transgenic lines overexpressing Os2H16 show enhanced tolerance to bacterial blight and sheath blight disease, respectively caused by Xanthomonas oryzae pv
Os3BGlu6	Os03g0212800	LOC_Os03g11420	chloroplast	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Os3BGlu6 was responsive to drought and ABA treatments, and the protein was localized to the chloroplast
Os3BGlu6	Os03g0212800	LOC_Os03g11420	oxidative stress	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Transcriptomics revealed that disruption of Os3BGlu6 resulted in chloroplastic oxidative stress and lowered Rubisco activity even under normal condition
Os3BGlu6	Os03g0212800	LOC_Os03g11420	drought	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.
Os3BGlu6	Os03g0212800	LOC_Os03g11420	drought	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Drought induced Os3BGlu6 to form dimmers, and the degree of polymerization correlated well with the increase in cellular ABA levels and drought tolerance in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	drought	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Os3BGlu6 was responsive to drought and ABA treatments, and the protein was localized to the chloroplast
Os3BGlu6	Os03g0212800	LOC_Os03g11420	drought	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Taken together, these results suggest that chloroplastically localized Os3BGlu6 significantly affects cellular ABA pools, thereby affecting drought tolerance and photosynthesis in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	photosynthesis	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.
Os3BGlu6	Os03g0212800	LOC_Os03g11420	photosynthesis	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Disruption of Os3BGlu6 in rice r esulted in dwarfism, lower ABA content in leaves, drought-sensitivity, lower photosynthesis rate, and higher intercellular CO2 concentration
Os3BGlu6	Os03g0212800	LOC_Os03g11420	photosynthesis	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Taken together, these results suggest that chloroplastically localized Os3BGlu6 significantly affects cellular ABA pools, thereby affecting drought tolerance and photosynthesis in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	tolerance	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.
Os3BGlu6	Os03g0212800	LOC_Os03g11420	tolerance	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Drought induced Os3BGlu6 to form dimmers, and the degree of polymerization correlated well with the increase in cellular ABA levels and drought tolerance in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	tolerance	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Taken together, these results suggest that chloroplastically localized Os3BGlu6 significantly affects cellular ABA pools, thereby affecting drought tolerance and photosynthesis in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	oxidative	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Transcriptomics revealed that disruption of Os3BGlu6 resulted in chloroplastic oxidative stress and lowered Rubisco activity even under normal condition
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Disruption of Os3BGlu6 in rice r esulted in dwarfism, lower ABA content in leaves, drought-sensitivity, lower photosynthesis rate, and higher intercellular CO2 concentration
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Os3BGlu6 could hydrolyze ABA-GE to ABA in vitro
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Drought induced Os3BGlu6 to form dimmers, and the degree of polymerization correlated well with the increase in cellular ABA levels and drought tolerance in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Os3BGlu6 was responsive to drought and ABA treatments, and the protein was localized to the chloroplast
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Taken together, these results suggest that chloroplastically localized Os3BGlu6 significantly affects cellular ABA pools, thereby affecting drought tolerance and photosynthesis in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	drought tolerance	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.
Os3BGlu6	Os03g0212800	LOC_Os03g11420	drought tolerance	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Drought induced Os3BGlu6 to form dimmers, and the degree of polymerization correlated well with the increase in cellular ABA levels and drought tolerance in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	drought tolerance	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Taken together, these results suggest that chloroplastically localized Os3BGlu6 significantly affects cellular ABA pools, thereby affecting drought tolerance and photosynthesis in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	stress	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Transcriptomics revealed that disruption of Os3BGlu6 resulted in chloroplastic oxidative stress and lowered Rubisco activity even under normal condition
Os3BGlu6	Os03g0212800	LOC_Os03g11420	stomatal	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Disruption of Os3BGlu6 resulted in the increased stomatal density and impaired stomatal movement
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Disruption of Os3BGlu6 in rice r esulted in dwarfism, lower ABA content in leaves, drought-sensitivity, lower photosynthesis rate, and higher intercellular CO2 concentration
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Os3BGlu6 could hydrolyze ABA-GE to ABA in vitro
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Drought induced Os3BGlu6 to form dimmers, and the degree of polymerization correlated well with the increase in cellular ABA levels and drought tolerance in rice
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Os3BGlu6 was responsive to drought and ABA treatments, and the protein was localized to the chloroplast
Os3BGlu6	Os03g0212800	LOC_Os03g11420	ABA	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	Taken together, these results suggest that chloroplastically localized Os3BGlu6 significantly affects cellular ABA pools, thereby affecting drought tolerance and photosynthesis in rice
Os3BGlu7	Os03g0703000	LOC_Os03g49600	seed	Rice family GH1 glycoside hydrolases with beta-D-glucosidase and beta-D-mannosidase activities	Rice BGlu1, hereafter designated Os3BGlu7 to be consistent with the names of other rice isoenzymes, is another rice b-D-glucosidase, which is highly expressed in germinating seed, shoot, and flower, and is also specific to (1,3)- and (1,4)-b-D-linked glucooligosaccharides
Os3BGlu7	Os03g0703000	LOC_Os03g49600	shoot	Rice family GH1 glycoside hydrolases with beta-D-glucosidase and beta-D-mannosidase activities	Rice BGlu1, hereafter designated Os3BGlu7 to be consistent with the names of other rice isoenzymes, is another rice b-D-glucosidase, which is highly expressed in germinating seed, shoot, and flower, and is also specific to (1,3)- and (1,4)-b-D-linked glucooligosaccharides
Os3BGlu7	Os03g0703000	LOC_Os03g49600	flower	Rice family GH1 glycoside hydrolases with beta-D-glucosidase and beta-D-mannosidase activities	Rice BGlu1, hereafter designated Os3BGlu7 to be consistent with the names of other rice isoenzymes, is another rice b-D-glucosidase, which is highly expressed in germinating seed, shoot, and flower, and is also specific to (1,3)- and (1,4)-b-D-linked glucooligosaccharides
Os4BGlu10	Os04g0474500	LOC_Os04g39840	seed germination	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling. Glucosidases (BGlus) belong to glycoside hydrolase family 1 and have many functions in plants.
Os4BGlu10	Os04g0474500	LOC_Os04g39840	root elongation	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling. Glucosidases (BGlus) belong to glycoside hydrolase family 1 and have many functions in plants.
Os4BGlu10	Os04g0474500	LOC_Os04g39840	drought tolerance	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling. Glucosidases (BGlus) belong to glycoside hydrolase family 1 and have many functions in plants.
Os4BGlu12	Os04g0474800	LOC_Os04g39880	cell wall	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	Os4BGlu12 expressed in recombinant Escherichia coli hydrolyzed β-(1,3;1,4)-glucooligosaccharides generated by the wounding-induced rice endo-(1,3;1,4)-β-glucanase OsEGL1, suggesting that both enzymes may act in concert in remodeling of damaged cell wall
Os4BGlu12	Os04g0474800	LOC_Os04g39880	cell wall	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	The amino acid residues predicted to line the active site of Os4BGlu12 are more similar to those of cyanogenic and flavonoid β-glucosidases than oligosaccharide hydrolases, and it may function in defense, as well as in cell wall-derived oligosaccharide break-down
Os4BGlu12	Os04g0474800	LOC_Os04g39880	cell wall	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides
Os4BGlu12	Os04g0474800	LOC_Os04g39880	salinity	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	Rice Os4BGlu12 β-glucosidase is a family 1 glycoside hydrolase, the transcript levels of which have previously been found to be induced in response to herbivore attack and salinity stress
Os4BGlu12	Os04g0474800	LOC_Os04g39880	shoot	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	Here, high levels of Os4bglu12 transcripts were also detected in the shoot during germination, in the leaf sheath and stem of mature rice plants under normal growth conditions
Os4BGlu12	Os04g0474800	LOC_Os04g39880	growth	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	Here, high levels of Os4bglu12 transcripts were also detected in the shoot during germination, in the leaf sheath and stem of mature rice plants under normal growth conditions
Os4BGlu12	Os04g0474800	LOC_Os04g39880	leaf	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	Here, high levels of Os4bglu12 transcripts were also detected in the shoot during germination, in the leaf sheath and stem of mature rice plants under normal growth conditions
Os4BGlu12	Os04g0474800	LOC_Os04g39880	seedling	Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase	The cDNA of the Os4bglu12 gene, which encodes a protein identical at 40 of 44 amino acid residues with the N-terminal sequence of a cell wall-bound enzyme previously purified from germinating rice, was isolated by RT-PCR from rice seedlings
Os4BGlu12	Os04g0474800	LOC_Os04g39880	cell wall	Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase	The cDNA of the Os4bglu12 gene, which encodes a protein identical at 40 of 44 amino acid residues with the N-terminal sequence of a cell wall-bound enzyme previously purified from germinating rice, was isolated by RT-PCR from rice seedlings
Os4BGlu12	Os04g0474800	LOC_Os04g39880	cell wall	Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase	To begin this analysis, Os4bglu12 beta-glucosidase was characterized and found to have high exoglucanase activity, consistent with a role in cell wall metabolism
Os4BGlu12	Os04g0474800	LOC_Os04g39880	stem	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	Here, high levels of Os4bglu12 transcripts were also detected in the shoot during germination, in the leaf sheath and stem of mature rice plants under normal growth conditions
Os4BGlu12	Os04g0474800	LOC_Os04g39880	sheath	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	Here, high levels of Os4bglu12 transcripts were also detected in the shoot during germination, in the leaf sheath and stem of mature rice plants under normal growth conditions
Os4BGlu12	Os04g0474800	LOC_Os04g39880	ethylene	Expression, purification, crystallization and preliminary X-ray analysis of rice (Oryza sativa L.) Os4BGlu12 beta-glucosidase	Native Os4BGlu12 and its complex with 2,4-dinitrophenyl-2-deoxy-2-fluoro-beta-D-glucopyranoside (DNP2FG) were crystallized using 19% polyethylene glycol (3350 or 2000, respectively) in 0
Os4BGlu12	Os04g0474800	LOC_Os04g39880	salinity stress	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	Rice Os4BGlu12 β-glucosidase is a family 1 glycoside hydrolase, the transcript levels of which have previously been found to be induced in response to herbivore attack and salinity stress
Os4BGlu12	Os04g0474800	LOC_Os04g39880	defense	Rice Os4BGlu12 is a wound-induced β-glucosidase that hydrolyzes cell wall-β-glucan-derived oligosaccharides and glycosides	The amino acid residues predicted to line the active site of Os4BGlu12 are more similar to those of cyanogenic and flavonoid β-glucosidases than oligosaccharide hydrolases, and it may function in defense, as well as in cell wall-derived oligosaccharide break-down
Os4BGlu14	Os04g0513100	LOC_Os04g43360	grain	Os4BGlu14, a monolignol Glucosidase, negatively affects seed longevity by influencing primary metabolism in rice	Compared to the wild type, rice lines overexpressing Os4BGlu14 had significantly greater grain length, but smaller grain width and thickness
Os4BGlu14	Os04g0513100	LOC_Os04g43360	grain length	Os4BGlu14, a monolignol Glucosidase, negatively affects seed longevity by influencing primary metabolism in rice	Compared to the wild type, rice lines overexpressing Os4BGlu14 had significantly greater grain length, but smaller grain width and thickness
Os4BGlu14	Os04g0513100	LOC_Os04g43360	seed	Os4BGlu14, a monolignol Glucosidase, negatively affects seed longevity by influencing primary metabolism in rice	Our study provides a basis for understanding the function of Os4BGlu14 in seed longevity in rice
Os4BGlu14	Os04g0513100	LOC_Os04g43360	grain width	Os4BGlu14, a monolignol Glucosidase, negatively affects seed longevity by influencing primary metabolism in rice	Compared to the wild type, rice lines overexpressing Os4BGlu14 had significantly greater grain length, but smaller grain width and thickness
Os4CL3	Os02g0177600	LOC_Os02g08100	growth	Functional characterization of evolutionarily divergent 4-coumarate:coenzyme a ligases in rice	Suppression of Os4CL3 expression resulted in significant lignin reduction, shorter plant growth, and other morphological changes
Os4CL3	Os02g0177600	LOC_Os02g08100	cell wall	Genome-edited rice deficient in two 4-COUMARATE:COENZYME A LIGASE genes displays diverse lignin alterations.	 Further, the loss-of-function of Os4CL3 and Os4CL4 notably reduced cell-wall-bound ferulates, indicating their roles in cell wall feruloylation
Os4CL3	Os02g0177600	LOC_Os02g08100	lignin	Genome-edited rice deficient in two 4-COUMARATE:COENZYME A LIGASE genes displays diverse lignin alterations.	 A series of chemical and nuclear magnetic resonance analyses revealed that loss-of-function of Os4CL3 and Os4CL4 differently altered the composition of lignin polymer units
Os4CL3	Os02g0177600	LOC_Os02g08100	lignin	Genome-edited rice deficient in two 4-COUMARATE:COENZYME A LIGASE genes displays diverse lignin alterations.	 Loss of function of Os4CL3 induced marked reductions in the major guaiacyl and syringyl lignin units derived from both the conserved non-γ-p-coumaroylated and the grass-specific γ-p-coumaroylated monolignols, with more prominent reductions in guaiacyl units than in syringyl units
Os4CL3	Os02g0177600	LOC_Os02g08100	cellulose	Lodging variation of weedy rice in China and its epigenetic influencing mechanisms.	 DNA methylation variation of lignin synthesis-related OsSWN1, OsMYBX9, OsPAL1 and Os4CL3 mediated their expression level differnece and affected the ratio of cellulose to lignin content
Os4CL3	Os02g0177600	LOC_Os02g08100	lignin	Lodging variation of weedy rice in China and its epigenetic influencing mechanisms.	 DNA methylation variation of lignin synthesis-related OsSWN1, OsMYBX9, OsPAL1 and Os4CL3 mediated their expression level differnece and affected the ratio of cellulose to lignin content
Os4CL4	Os06g0656500	LOC_Os06g44620	cell wall	Genome-edited rice deficient in two 4-COUMARATE:COENZYME A LIGASE genes displays diverse lignin alterations.	 Further, the loss-of-function of Os4CL3 and Os4CL4 notably reduced cell-wall-bound ferulates, indicating their roles in cell wall feruloylation
Os4CL4	Os06g0656500	LOC_Os06g44620	lignin	Genome-edited rice deficient in two 4-COUMARATE:COENZYME A LIGASE genes displays diverse lignin alterations.	 A series of chemical and nuclear magnetic resonance analyses revealed that loss-of-function of Os4CL3 and Os4CL4 differently altered the composition of lignin polymer units
Os4CL5	Os08g0448000	LOC_Os08g34790	Al resistance	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification	Furthermore, transient dual-luciferase assay showed that ART1 directly inhibited the expression of OsMYB30, and in turn repressed Os4CL5-dependent 4-coumaric acid accumulation, hence reducing the Al-binding capacity of cell wall and enhancing Al resistance.
Os4CL5	Os08g0448000	LOC_Os08g34790	aluminum resistance	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification	Furthermore, transient dual-luciferase assay showed that ART1 directly inhibited the expression of OsMYB30, and in turn repressed Os4CL5-dependent 4-coumaric acid accumulation, hence reducing the Al-binding capacity of cell wall and enhancing Al resistance.
Os6	Os01g0805400	LOC_Os01g59100	cytokinin	Identification and characterization of the first cytokinin glycosyltransferase from rice.	Os6 was overexpressed in Arabidopsis, and the extraction of cytokinin glycosides showed that Os6 is functionally active in planta
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	inflorescence	Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress	RT-PCR experiments revealed that Os6PGDH expression was high in inflorescence, low in root and embryos but almost absent in leaves
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	salt	Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress	Furthermore, Os6PGDH was up-regulated in the shoots under salt stress
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	shoot	Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress	Furthermore, Os6PGDH was up-regulated in the shoots under salt stress
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	root	Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress	RT-PCR experiments revealed that Os6PGDH expression was high in inflorescence, low in root and embryos but almost absent in leaves
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	salt stress	Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress	Furthermore, Os6PGDH was up-regulated in the shoots under salt stress
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	leaf	Overexpression of a Cytosolic 6-Phosphogluconate Dehydrogenase Gene Enhances the Resistance of Rice to Nilaparvata lugens	Levels of Os6PGDH1 transcripts were detected in all five examined tissues, with the highest in outer leaf sheaths and lowest in inner leaf sheaths
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	growth	Overexpression of a Cytosolic 6-Phosphogluconate Dehydrogenase Gene Enhances the Resistance of Rice to Nilaparvata lugens	Taken together, these results indicate that Os6PGDH1 plays a pivotal role not only in rice growth but also in the resistance of rice to BPH by modulating JA, ethylene, and H2O2 pathways
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	resistance	Overexpression of a Cytosolic 6-Phosphogluconate Dehydrogenase Gene Enhances the Resistance of Rice to Nilaparvata lugens	Taken together, these results indicate that Os6PGDH1 plays a pivotal role not only in rice growth but also in the resistance of rice to BPH by modulating JA, ethylene, and H2O2 pathways
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	ethylene	Overexpression of a Cytosolic 6-Phosphogluconate Dehydrogenase Gene Enhances the Resistance of Rice to Nilaparvata lugens	In addition, the overexpression of Os6PGDH1 enhanced levels of BPH-induced JA, jasmonoyl-isoleucine (JA-Ile), and H2O2, but decreased BPH-induced levels of ethylene
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	jasmonic	Overexpression of a Cytosolic 6-Phosphogluconate Dehydrogenase Gene Enhances the Resistance of Rice to Nilaparvata lugens	Os6PGDH1 expression was strongly induced by mechanical wounding, infestation of gravid BPH females, and jasmonic acid (JA) treatment
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	jasmonic acid	Overexpression of a Cytosolic 6-Phosphogluconate Dehydrogenase Gene Enhances the Resistance of Rice to Nilaparvata lugens	Os6PGDH1 expression was strongly induced by mechanical wounding, infestation of gravid BPH females, and jasmonic acid (JA) treatment
Os6PGDH|Os6PGDH1	Os06g0111500	LOC_Os06g02144	height	Overexpression of a Cytosolic 6-Phosphogluconate Dehydrogenase Gene Enhances the Resistance of Rice to Nilaparvata lugens	Overexpressing Os6PGDH1 (oe6PGDH) decreased the height of rice plants and the mass of the aboveground part of plants, but slightly increased the length of plant roots
Os6PGDH2	Os11g0484500	LOC_Os11g29400	drought	The 6-phosphogluconate dehydrogenase genes are responsive to abiotic stresses in rice	However, the transcript levels of both Os6PGDH1 and Os6PGDH2 are up-regulated in rice seedlings under drought, cold, high salinity and ABA treatments
Os6PGDH2	Os11g0484500	LOC_Os11g29400	seedling	The 6-phosphogluconate dehydrogenase genes are responsive to abiotic stresses in rice	However, the transcript levels of both Os6PGDH1 and Os6PGDH2 are up-regulated in rice seedlings under drought, cold, high salinity and ABA treatments
Os6PGDH2	Os11g0484500	LOC_Os11g29400	salinity	The 6-phosphogluconate dehydrogenase genes are responsive to abiotic stresses in rice	However, the transcript levels of both Os6PGDH1 and Os6PGDH2 are up-regulated in rice seedlings under drought, cold, high salinity and ABA treatments
Os6PGDH2	Os11g0484500	LOC_Os11g29400	ABA	The 6-phosphogluconate dehydrogenase genes are responsive to abiotic stresses in rice	However, the transcript levels of both Os6PGDH1 and Os6PGDH2 are up-regulated in rice seedlings under drought, cold, high salinity and ABA treatments
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	pollen	Promoter mutations of an essential gene for pollen development result in disease resistance in rice	Here we show that xa13, a recessive allele conferring disease resistance against bacterial blight, one of the most devastating rice diseases worldwide, plays a key role in both disease resistance and pollen development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	pollen	Promoter mutations of an essential gene for pollen development result in disease resistance in rice	The dominant allele, Xa13, is required for both bacterial growth and pollen development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice	The findings indicate that Os8N3 is a host susceptibility gene for bacterial blight targeted by the type III effector PthXo1
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Genetic and physical mapping of xa13 , a recessive bacterial blight resistance gene in rice	The recessive gene, xa13, confers resistance to Philippine race 6 (PXO99) of the bacterial blight pathogen Xanthomonas oryzae pv oryzae
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Genetic and physical mapping of xa13 , a recessive bacterial blight resistance gene in rice	Genetic and physical mapping of xa13 , a recessive bacterial blight resistance gene in rice
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	breeding	Targeting xa13, a recessive gene for bacterial blight resistance in rice	These markers will be useful tools for the marker-assisted selection of xa13 in breeding programs
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Promoter mutations of an essential gene for pollen development result in disease resistance in rice	Here we show that xa13, a recessive allele conferring disease resistance against bacterial blight, one of the most devastating rice diseases worldwide, plays a key role in both disease resistance and pollen development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	The recessive rice bacterial blight resistance gene xa13, also involved in pollen development, has been cloned and its resistance mechanism has been recently characterized
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	This report describes the conversion of bacterial blight resistance mediated by the recessive xa13 gene into a dominant trait to facilitate its use in a breeding program
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	 xoo 	Targeting xa13, a recessive gene for bacterial blight resistance in rice	To clone and characterize the recessive R genes, we fine-mapped xa13, a fully recessive gene for Xoo resistance, to a DNA fragment of 14
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Genetic and physical mapping of xa13 , a recessive bacterial blight resistance gene in rice	The recessive gene, xa13, confers resistance to Philippine race 6 (PXO99) of the bacterial blight pathogen Xanthomonas oryzae pv oryzae
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Genetic and physical mapping of xa13 , a recessive bacterial blight resistance gene in rice	Genetic and physical mapping of xa13 , a recessive bacterial blight resistance gene in rice
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	The recessive rice bacterial blight resistance gene xa13, also involved in pollen development, has been cloned and its resistance mechanism has been recently characterized
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	This report describes the conversion of bacterial blight resistance mediated by the recessive xa13 gene into a dominant trait to facilitate its use in a breeding program
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3	Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Targeting xa13, a recessive gene for bacterial blight resistance in rice	Targeting xa13, a recessive gene for bacterial blight resistance in rice
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice	The findings indicate that Os8N3 is a host susceptibility gene for bacterial blight targeted by the type III effector PthXo1
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	disease	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	pollen	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	The recessive rice bacterial blight resistance gene xa13, also involved in pollen development, has been cloned and its resistance mechanism has been recently characterized
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	pollen	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	Tissue-specific promoters were used to exclude most of the expression of artificial microRNA in the anther to ensure that Xa13 functioned normally during pollen development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India	Representative pathotypes were used to evaluate seven near-isogenic lines carrying individual bacterial blight resistance genes (Xa3, Xa4, xa5, Xa7, Xa10, xa13, and Xa21) and gene pyramids
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	breeding	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	This report describes the conversion of bacterial blight resistance mediated by the recessive xa13 gene into a dominant trait to facilitate its use in a breeding program
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	breeding	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Targeting xa13, a recessive gene for bacterial blight resistance in rice	Targeting xa13, a recessive gene for bacterial blight resistance in rice
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	resistant	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice	Silencing of Os8N3 by inhibitory RNA produced plants that were resistant to infection by strain PXO99(A) yet remained susceptible to other strains of the pathogen
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	growth	Promoter mutations of an essential gene for pollen development result in disease resistance in rice	The dominant allele, Xa13, is required for both bacterial growth and pollen development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	disease	Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3	Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	disease	Characterization of Xanthomonas oryzae-responsive cis-acting element in the promoter of rice race-specific susceptibility gene Xa13	PXO99 causes rice disease by inducing Xa13
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	disease	Promoter mutations of an essential gene for pollen development result in disease resistance in rice	Here we show that xa13, a recessive allele conferring disease resistance against bacterial blight, one of the most devastating rice diseases worldwide, plays a key role in both disease resistance and pollen development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	disease	Promoter mutations of an essential gene for pollen development result in disease resistance in rice	The recessive xa13 allele represents a new type of plant disease resistance
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	anther	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding	Tissue-specific promoters were used to exclude most of the expression of artificial microRNA in the anther to ensure that Xa13 functioned normally during pollen development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	disease resistance	Promoter mutations of an essential gene for pollen development result in disease resistance in rice	Here we show that xa13, a recessive allele conferring disease resistance against bacterial blight, one of the most devastating rice diseases worldwide, plays a key role in both disease resistance and pollen development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	disease resistance	Promoter mutations of an essential gene for pollen development result in disease resistance in rice	The recessive xa13 allele represents a new type of plant disease resistance
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Promoter mutations of an essential gene for pollen development result in disease resistance in rice	Here we show that xa13, a recessive allele conferring disease resistance against bacterial blight, one of the most devastating rice diseases worldwide, plays a key role in both disease resistance and pollen development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3	Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India	Representative pathotypes were used to evaluate seven near-isogenic lines carrying individual bacterial blight resistance genes (Xa3, Xa4, xa5, Xa7, Xa10, xa13, and Xa21) and gene pyramids
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	 The knockout of OsSWEET11 significantly decreased sucrose concentration in the mutant embryo-sacs and led to defective grain filling compared with that of the wild-type (WT) plant
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	development	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	This study investigated the role of sugar transporter OsSWEET11 during the early stage of rice caryopsis development using the β-glucoronidase (GUS)-represented expression, CRISPR-Cas9-mediated knockout, cross-fertilization, and RNA-seq analyses
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	development	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	 These results strongly suggested that OsSWEET11 played an important role in sucrose release from maternal tissue to the maternal-filial interface during the early stage of caryopsis development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	transporter	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	transporter	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	This study investigated the role of sugar transporter OsSWEET11 during the early stage of rice caryopsis development using the β-glucoronidase (GUS)-represented expression, CRISPR-Cas9-mediated knockout, cross-fertilization, and RNA-seq analyses
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain filling	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain filling	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	 The knockout of OsSWEET11 significantly decreased sucrose concentration in the mutant embryo-sacs and led to defective grain filling compared with that of the wild-type (WT) plant
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sugar	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sugar	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	This study investigated the role of sugar transporter OsSWEET11 during the early stage of rice caryopsis development using the β-glucoronidase (GUS)-represented expression, CRISPR-Cas9-mediated knockout, cross-fertilization, and RNA-seq analyses
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sucrose	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	 The knockout of OsSWEET11 significantly decreased sucrose concentration in the mutant embryo-sacs and led to defective grain filling compared with that of the wild-type (WT) plant
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sucrose	Essential Role of Sugar Transporter OsSWEET11 during the Early Stage of Rice Grain Filling.	 These results strongly suggested that OsSWEET11 played an important role in sucrose release from maternal tissue to the maternal-filial interface during the early stage of caryopsis development
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	resistance	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sheath	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sheath	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 In this study, we found that the rice sugar transporter, OsSWEET11 is involved in the pathogenesis of sheath blight disease
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sheath	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 The analyses of transgenic plants revealed that Ossweet11 mutants were less susceptible, whereas plants overexpressing OsSWEET11 were more susceptible to sheath blight compared to wild-type controls, but the yield of OsSWEET11 mutants and overexpressors was reduced
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	defense	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 To analyze whether inhibition of OsSWEET11 function in mesophyll cells is related to defense against this disease, mutated- OsSWEET11 was expressed under the control of Rubisco promoter, which is specific for green tissues
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	yield	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 The analyses of transgenic plants revealed that Ossweet11 mutants were less susceptible, whereas plants overexpressing OsSWEET11 were more susceptible to sheath blight compared to wild-type controls, but the yield of OsSWEET11 mutants and overexpressors was reduced
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	yield	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 The plants can be protected from infection by manipulating the expression of OsSWEET11 without affecting the crop yield
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	disease	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 In this study, we found that the rice sugar transporter, OsSWEET11 is involved in the pathogenesis of sheath blight disease
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 In this study, we found that the rice sugar transporter, OsSWEET11 is involved in the pathogenesis of sheath blight disease
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 The analyses of transgenic plants revealed that Ossweet11 mutants were less susceptible, whereas plants overexpressing OsSWEET11 were more susceptible to sheath blight compared to wild-type controls, but the yield of OsSWEET11 mutants and overexpressors was reduced
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sugar	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 In this study, we found that the rice sugar transporter, OsSWEET11 is involved in the pathogenesis of sheath blight disease
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sugar	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 solani might acquire sugar from rice leaves by activating OsSWEET11 expression
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight disease	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight disease	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	 In this study, we found that the rice sugar transporter, OsSWEET11 is involved in the pathogenesis of sheath blight disease
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	resistance	CRISPR/Cas9-targeted mutagenesis of Os8N3 in rice to confer resistance to Xanthomonas oryzae pv. oryzae.	CRISPR/Cas9-targeted mutagenesis of Os8N3 in rice to confer resistance to Xanthomonas oryzae pv. oryzae.
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	resistance	CRISPR/Cas9-targeted mutagenesis of Os8N3 in rice to confer resistance to Xanthomonas oryzae pv. oryzae.	 It has previously been reported that, in rice plants, knockdown of the Os8N3 gene resulted in enhanced resistance to Xanthomonas oryzae pv
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	resistance	CRISPR/Cas9-targeted mutagenesis of Os8N3 in rice to confer resistance to Xanthomonas oryzae pv. oryzae.	 Analysis of the genotypes and edited Os8N3 in T0, T1, T2, and T3 transgenic rice plants showed that the mutations were transmitted to subsequent generations, and homozygous mutants displayed significantly enhanced resistance to Xoo
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	resistance	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 Homozygous (BC3F3 generation), three-gene bacterial blight pyramided (xa5 + xa13 + Xa21) lines were developed, and these lines were crossed with Tetep to combine blast (Pi54) and sheath blight (qSBR7-1, qSBR11-1, and qSBR11-2) resistance
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	resistance	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sheath	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 Homozygous (BC3F3 generation), three-gene bacterial blight pyramided (xa5 + xa13 + Xa21) lines were developed, and these lines were crossed with Tetep to combine blast (Pi54) and sheath blight (qSBR7-1, qSBR11-1, and qSBR11-2) resistance
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	sheath	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 Homozygous (BC3F3 generation), three-gene bacterial blight pyramided (xa5 + xa13 + Xa21) lines were developed, and these lines were crossed with Tetep to combine blast (Pi54) and sheath blight (qSBR7-1, qSBR11-1, and qSBR11-2) resistance
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blight	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 Homozygous (BC3F3 generation), three-gene bacterial blight pyramided (xa5 + xa13 + Xa21) lines were developed, and these lines were crossed with Tetep to combine blast (Pi54) and sheath blight (qSBR7-1, qSBR11-1, and qSBR11-2) resistance
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	bacterial blight	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	blast	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 Homozygous (BC3F3 generation), three-gene bacterial blight pyramided (xa5 + xa13 + Xa21) lines were developed, and these lines were crossed with Tetep to combine blast (Pi54) and sheath blight (qSBR7-1, qSBR11-1, and qSBR11-2) resistance
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	development	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 Both OsSWEET14 and OsSWEET11 exhibited distinct spatiotemporal expression patterns between the early stage of caryopsis development and the rapid grain-filling stage
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	starch	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain weight	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	pericarp	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain-filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 ossweet14 knockout mutants did not show any detectable phenotypic differences from the wild type, whereas ossweet14;ossweet11 double-knockout mutants had much more severe phenotypes than ossweet11 single-knockout mutants, including strongly reduced grain weight and yield, reduced grain-filling rate, and increased starch accumulation in the pericarp
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain-filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 Both OsSWEET14 and OsSWEET11 exhibited distinct spatiotemporal expression patterns between the early stage of caryopsis development and the rapid grain-filling stage
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	grain-filling	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice	 During the rapid grain-filling stage, OsSWEET14 and OsSWEET11 localized to four key sites: vascular parenchyma cells, the nucellar projection, the nucellar epidermis, and cross cells
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	pollen	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results indicate that both OsSWEET15 and OsSWEET11 play important and similar roles in rice pollen development, caryopsis formation and seed-setting, in addition to their function in seed-filling that was demonstrated previously
Os8N3|xa13|OsSWEET11	Os08g0535200	LOC_Os08g42350	pollen development	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results indicate that both OsSWEET15 and OsSWEET11 play important and similar roles in rice pollen development, caryopsis formation and seed-setting, in addition to their function in seed-filling that was demonstrated previously
Os9BGlu31	Os09g0511600	LOC_Os09g33680	leaf	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates	The Os9BGlu31 gene is most highly expressed in senescing flag leaf and developing seed and is induced in rice seedlings in response to drought stress and treatment with phytohormones, including abscisic acid, ethephon, methyljasmonate, 2,4-dichlorophenoxyacetic acid, and kinetin
Os9BGlu31	Os09g0511600	LOC_Os09g33680	phytohormone	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates	Rice (Oryza sativa) Os9BGlu31 is a glycoside hydrolase family GH1 transglycosidase that acts to transfer glucose between phenolic acids, phytohormones, and flavonoids
Os9BGlu31	Os09g0511600	LOC_Os09g33680	phytohormone	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates	The free acids of these compounds also served as the best acceptors, suggesting that Os9BGlu31 may equilibrate the levels of phenolic acids and carboxylated phytohormones and their glucoconjugates
Os9BGlu31	Os09g0511600	LOC_Os09g33680	phytohormone	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates	The Os9BGlu31 gene is most highly expressed in senescing flag leaf and developing seed and is induced in rice seedlings in response to drought stress and treatment with phytohormones, including abscisic acid, ethephon, methyljasmonate, 2,4-dichlorophenoxyacetic acid, and kinetin
Os9BGlu31	Os09g0511600	LOC_Os09g33680	phytohormone	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates
Os9BGlu31	Os09g0511600	LOC_Os09g33680	seed	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates	The Os9BGlu31 gene is most highly expressed in senescing flag leaf and developing seed and is induced in rice seedlings in response to drought stress and treatment with phytohormones, including abscisic acid, ethephon, methyljasmonate, 2,4-dichlorophenoxyacetic acid, and kinetin
Os9BGlu31	Os09g0511600	LOC_Os09g33680	seedling	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates	The Os9BGlu31 gene is most highly expressed in senescing flag leaf and developing seed and is induced in rice seedlings in response to drought stress and treatment with phytohormones, including abscisic acid, ethephon, methyljasmonate, 2,4-dichlorophenoxyacetic acid, and kinetin
Os9BGlu31	Os09g0511600	LOC_Os09g33680	drought	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates	The Os9BGlu31 gene is most highly expressed in senescing flag leaf and developing seed and is induced in rice seedlings in response to drought stress and treatment with phytohormones, including abscisic acid, ethephon, methyljasmonate, 2,4-dichlorophenoxyacetic acid, and kinetin
Os9BGlu31	Os09g0511600	LOC_Os09g33680	jasmonate	Rice Os9BGlu31 is a transglucosidase with the capacity to equilibrate phenylpropanoid, flavonoid, and phytohormone glycoconjugates	The Os9BGlu31 gene is most highly expressed in senescing flag leaf and developing seed and is induced in rice seedlings in response to drought stress and treatment with phytohormones, including abscisic acid, ethephon, methyljasmonate, 2,4-dichlorophenoxyacetic acid, and kinetin
Os9BGlu33	Os09g0511900	LOC_Os09g33710	root	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.
Os9BGlu33	Os09g0511900	LOC_Os09g33710	root	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	root	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	seed	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.
Os9BGlu33	Os09g0511900	LOC_Os09g33710	seed	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	seed	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	drought	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.
Os9BGlu33	Os09g0511900	LOC_Os09g33710	drought	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	drought	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	seed germination	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.
Os9BGlu33	Os09g0511900	LOC_Os09g33710	seed germination	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	seed germination	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	tolerance	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.
Os9BGlu33	Os09g0511900	LOC_Os09g33710	tolerance	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	tolerance	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	ABA	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	drought tolerance	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.
Os9BGlu33	Os09g0511900	LOC_Os09g33710	drought tolerance	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	drought tolerance	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	root elongation	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.
Os9BGlu33	Os09g0511900	LOC_Os09g33710	root elongation	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	root elongation	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	iaa	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	ABA	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	25 M IAA, and Os9BGlu33 was up-regulated by PEG, IAA, and ABA
Os9BGlu33	Os09g0511900	LOC_Os09g33710	ABA	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	IAA	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Taken together, we demonstrate that Os4BGlu10, Os6BGlu24, and Os9BGlu33 play specific roles in seed germination, root elongation, and drought tolerance with various relation with IAA and ABA signaling
Os9BGlu33	Os09g0511900	LOC_Os09g33710	abscisic acid	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Morphological, physiological, and gene expression analyses showed that Os4BGlu10, Os6BGlu24, and Os9BGlu33 played specific roles in seed germination, root elongation, and drought tolerance of rice, with various relations with indole-3-acetic acid (IAA) and abscisic acid (ABA) signaling
Osa-miR1320	None	None	transcription factor	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.
Osa-miR1320	None	None	tolerance	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.
Osa-miR1320	None	None	cold tolerance	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.
Osa-miR1320	None	None	cold	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.
Osa-miR159a	None	None	resistance	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Proper expression of Osa-miR159a was critical for coordinating rice blast resistance with grain development
Osa-miR159a	None	None	development	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development
Osa-miR159a	None	None	development	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Alteration of the expression of Osa-miR159a impacted yield traits including pollen and grain development
Osa-miR159a	None	None	development	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Proper expression of Osa-miR159a was critical for coordinating rice blast resistance with grain development
Osa-miR159a	None	None	pollen	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Alteration of the expression of Osa-miR159a impacted yield traits including pollen and grain development
Osa-miR159a	None	None	grain	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Alteration of the expression of Osa-miR159a impacted yield traits including pollen and grain development
Osa-miR159a	None	None	grain	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Proper expression of Osa-miR159a was critical for coordinating rice blast resistance with grain development
Osa-miR159a	None	None	yield	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Alteration of the expression of Osa-miR159a impacted yield traits including pollen and grain development
Osa-miR159a	None	None	blast	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Proper expression of Osa-miR159a was critical for coordinating rice blast resistance with grain development
Osa-miR159a	None	None	magnaporthe oryzae	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development
Osa-miR159a	None	None	immunity	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development
Osa-miR159a	None	None	immunity	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Conclusions: Our results indicated that Osa-miR159a positively regulated rice immunity against M
Osa-miR159a	None	None	blast resistance	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	Proper expression of Osa-miR159a was critical for coordinating rice blast resistance with grain development
Osa-miR159a	None	None	resistant	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	The expression of Osa-miR159a was suppressed in a susceptible accession at 12, 24, and 48 h post-inoculation (hpi); it was upregulated in a resistant accession of M
Osa-miR159a	None	None	resistant	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development	The transgenic rice lines overexpressing Osa-miR159a were highly resistant to M
Osa-miR160a	None	None	resistance	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.
Osa-miR162a	None	None	resistance	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.
Osa-miR162a	None	None	resistance	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	Overexpression of Osa-miR162a enhances rice resistance to M
Osa-miR162a	None	None	grains per panicle	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	Moreover, the transgenic lines overexpressing Osa-miR162a display decreased seed setting rate resulting in slight reduced yield per plant, whereas the transgenic lines blocking Osa-miR162 show an increased number of grains per panicle, resulting in increased yield per plant
Osa-miR162a	None	None	seed	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	Moreover, the transgenic lines overexpressing Osa-miR162a display decreased seed setting rate resulting in slight reduced yield per plant, whereas the transgenic lines blocking Osa-miR162 show an increased number of grains per panicle, resulting in increased yield per plant
Osa-miR162a	None	None	yield	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	Moreover, the transgenic lines overexpressing Osa-miR162a display decreased seed setting rate resulting in slight reduced yield per plant, whereas the transgenic lines blocking Osa-miR162 show an increased number of grains per panicle, resulting in increased yield per plant
Osa-miR162a	None	None	blast	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	In contrast, blocking Osa-miR162 by overexpressing a target mimic of Osa-miR162a enhances susceptibility to blast fungus associating with compromised induction of defense-related gene expression and H2O2 accumulation
Osa-miR162a	None	None	magnaporthe oryzae	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.
Osa-miR162a	None	None	immunity	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	Here we demonstrate that Osa-miR162a fine-tunes rice immunity against M
Osa-miR162a	None	None	immunity	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	Together, our results indicate that Osa-miR162a is involved in rice immunity against M
Osa-miR167d	None	None	resistance	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	By contrast, transgenic lines expressing a target mimicry to block Osa-miR167d enhanced resistance to rice blast disease
Osa-miR167d	None	None	auxin	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	Osa-miR167d belongs to a conserved miRNA family targeting auxin responsive factor (ARF) genes that act in developmental and stress-induced responses
Osa-miR167d	None	None	disease	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	By contrast, transgenic lines expressing a target mimicry to block Osa-miR167d enhanced resistance to rice blast disease
Osa-miR167d	None	None	blast	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	Transgenic rice lines over-expressing Osa-miR167d were highly susceptible to multiple blast fungal strains
Osa-miR167d	None	None	blast	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	By contrast, transgenic lines expressing a target mimicry to block Osa-miR167d enhanced resistance to rice blast disease
Osa-miR167d	None	None	magnaporthe oryzae	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.
Osa-miR167d	None	None	immunity	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	Here, we show that Osa-miR167d plays a negative role in rice immunity against M
Osa-miR167d	None	None	immunity	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	Taken together, our results indicate that Osa-miR167d negatively regulate rice immunity to facilitate the infection of M
Osa-miR167d	None	None	resistant	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	The expression of Osa-miR167d was significantly suppressed in a resistant accession at and after 24 hours post inoculation (hpi), however, its expression was significantly increased at 24 hpi in the susceptible accession upon M
Osa-miR167d	None	None	blast disease	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	By contrast, transgenic lines expressing a target mimicry to block Osa-miR167d enhanced resistance to rice blast disease
osa-miR171c	Os04g0623901	None	transcription factor	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
osa-miR171c	Os04g0623901	None	transcription factor	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Here, we report that the miRNA osa-miR171c targets four GRAS (GAI-RGA-SCR) plant-specific transcription factors (OsHAM1, OsHAM2, OsHAM3, and OsHAM4) to control the floral transition and maintenance of SAM indeterminacy in rice (Oryza sativa)
osa-miR171c	Os04g0623901	None	shoot	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
osa-miR171c	Os04g0623901	None	shoot	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Parallel expression analysis showed that osa-miR171c controlled the expression change of four OsHAMs in the shoot apex during floral transition, and responded to light
osa-miR171c	Os04g0623901	None	development	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
osa-miR171c	Os04g0623901	None	vegetative	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
osa-miR171c	Os04g0623901	None	floral	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Here, we report that the miRNA osa-miR171c targets four GRAS (GAI-RGA-SCR) plant-specific transcription factors (OsHAM1, OsHAM2, OsHAM3, and OsHAM4) to control the floral transition and maintenance of SAM indeterminacy in rice (Oryza sativa)
osa-miR171c	Os04g0623901	None	floral	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Parallel expression analysis showed that osa-miR171c controlled the expression change of four OsHAMs in the shoot apex during floral transition, and responded to light
osa-miR171c	Os04g0623901	None	meristem	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
osa-miR171c	Os04g0623901	None	reproductive	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
osa-miR171c	Os04g0623901	None	reproductive development	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
osa-miR171c	Os04g0623901	None	shoot apical meristem	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
Osa-MIR171f	None	None	drought tolerance	Rice microRNA171f/SCL6 module enhances drought tolerance by regulation of flavonoid biosynthesis genes	Rice microRNA171f/SCL6 module enhances drought tolerance by regulation of flavonoid biosynthesis genes
Osa-MIR171f	None	None	flavonoid biosynthesis	Rice microRNA171f/SCL6 module enhances drought tolerance by regulation of flavonoid biosynthesis genes	Rice microRNA171f/SCL6 module enhances drought tolerance by regulation of flavonoid biosynthesis genes
Osa-miR1871	None	None	resistance	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield.	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield.
Osa-miR1871	None	None	magnaporthe oryzae	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield.	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield.
Osa-miR1871	None	None	yield	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield
Osa-miR1871	None	None	grain yield	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield	Here, we show that blocking miR1871 improves rice resistance against Magnaporthe oryzae and enhances grain yield simultaneously.
osa-miR319a|Osa-MIR319a	Os01g0659400	LOC_Os01g46984	leaf	Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.).	We found that overexpressing Osa-MIR319a and Osa-MIR319b in rice both resulted in wider leaf blades
Osa-miR393a	None	None	development	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.
Osa-miR393a	None	None	drought	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	We found that Osa-miR393a transgenics had fewer, but longer tillers, enhanced drought stress tolerance associated with reduced stomata density and denser cuticles, improved salt stress tolerance associated with increased uptake of potassium, and enhanced heat stress tolerance associated with induced expression of small heat shock protein in comparison to wild type (WT) controls
Osa-miR393a	None	None	salt	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	We found that Osa-miR393a transgenics had fewer, but longer tillers, enhanced drought stress tolerance associated with reduced stomata density and denser cuticles, improved salt stress tolerance associated with increased uptake of potassium, and enhanced heat stress tolerance associated with induced expression of small heat shock protein in comparison to wild type (WT) controls
Osa-miR393a	None	None	tolerance	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	We found that Osa-miR393a transgenics had fewer, but longer tillers, enhanced drought stress tolerance associated with reduced stomata density and denser cuticles, improved salt stress tolerance associated with increased uptake of potassium, and enhanced heat stress tolerance associated with induced expression of small heat shock protein in comparison to wild type (WT) controls
Osa-miR393a	None	None	salt stress	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	We found that Osa-miR393a transgenics had fewer, but longer tillers, enhanced drought stress tolerance associated with reduced stomata density and denser cuticles, improved salt stress tolerance associated with increased uptake of potassium, and enhanced heat stress tolerance associated with induced expression of small heat shock protein in comparison to wild type (WT) controls
Osa-miR393a	None	None	stress	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.
Osa-miR393a	None	None	stress	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	We found that Osa-miR393a transgenics had fewer, but longer tillers, enhanced drought stress tolerance associated with reduced stomata density and denser cuticles, improved salt stress tolerance associated with increased uptake of potassium, and enhanced heat stress tolerance associated with induced expression of small heat shock protein in comparison to wild type (WT) controls
Osa-miR393a	None	None	plant development	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.
Osa-miR393a	None	None	drought stress	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	We found that Osa-miR393a transgenics had fewer, but longer tillers, enhanced drought stress tolerance associated with reduced stomata density and denser cuticles, improved salt stress tolerance associated with increased uptake of potassium, and enhanced heat stress tolerance associated with induced expression of small heat shock protein in comparison to wild type (WT) controls
Osa-miR393a	None	None	stomata	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	We found that Osa-miR393a transgenics had fewer, but longer tillers, enhanced drought stress tolerance associated with reduced stomata density and denser cuticles, improved salt stress tolerance associated with increased uptake of potassium, and enhanced heat stress tolerance associated with induced expression of small heat shock protein in comparison to wild type (WT) controls
Osa-miR393a	None	None	drought stress	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	We found that Osa-miR393a transgenics had fewer, but longer tillers, enhanced drought stress tolerance associated with reduced stomata density and denser cuticles, improved salt stress tolerance associated with increased uptake of potassium, and enhanced heat stress tolerance associated with induced expression of small heat shock protein in comparison to wild type (WT) controls
Osa-miR393a	None	None	stress tolerance	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.
Osa-miR393a	None	None	stress tolerance	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	We found that Osa-miR393a transgenics had fewer, but longer tillers, enhanced drought stress tolerance associated with reduced stomata density and denser cuticles, improved salt stress tolerance associated with increased uptake of potassium, and enhanced heat stress tolerance associated with induced expression of small heat shock protein in comparison to wild type (WT) controls
Osa-miR398b	None	None	blast	Osa-miR398b boosts H2 O2 production and rice blast disease-resistance via multiple superoxide dismutases.	Osa-miR398b boosts H2 O2 production and rice blast disease-resistance via multiple superoxide dismutases.
Osa-miR398b	None	None	blast disease	Osa-miR398b boosts H2 O2 production and rice blast disease-resistance via multiple superoxide dismutases.	Osa-miR398b boosts H2 O2 production and rice blast disease-resistance via multiple superoxide dismutases.
Osa-miR444b.2	None	None	sheath blight	Suppression of Rice Osa-miR444.2 Improves the Resistance to Sheath Blight in Rice Mediating through the Phytohormone Pathway	Together, our results suggest that Osa-miR444b.2 negatively mediated the resistance to R. solani in rice, which will contribute to the cultivation of sheath blight resistant varieties.
Osa-miR444b.2	None	None	sheath blight resistance	Suppression of Rice Osa-miR444.2 Improves the Resistance to Sheath Blight in Rice Mediating through the Phytohormone Pathway	Together, our results suggest that Osa-miR444b.2 negatively mediated the resistance to R. solani in rice, which will contribute to the cultivation of sheath blight resistant varieties.
osa-miR5506	None	None	transcription factor	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	osa-miR5506 targeted REM transcription factor LOC_Os03g11370
osa-miR5506	None	None	development	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	Summarily, these results demonstrated that rice-specific osa-miR5506 plays an essential role in the regulation of floral organ number, spikelet determinacy and female gametophyte development in rice
osa-miR5506	None	None	spikelet	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	Overexpression of osa-miR5506 caused pleiotropic abnormalities, including over- or under-developed palea, various numbers of floral organs and spikelet indeterminacy
osa-miR5506	None	None	spikelet	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	Summarily, these results demonstrated that rice-specific osa-miR5506 plays an essential role in the regulation of floral organ number, spikelet determinacy and female gametophyte development in rice
osa-miR5506	None	None	floral	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	Overexpression of osa-miR5506 caused pleiotropic abnormalities, including over- or under-developed palea, various numbers of floral organs and spikelet indeterminacy
osa-miR5506	None	None	floral	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	Summarily, these results demonstrated that rice-specific osa-miR5506 plays an essential role in the regulation of floral organ number, spikelet determinacy and female gametophyte development in rice
osa-miR5506	None	None	floral organ	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	Overexpression of osa-miR5506 caused pleiotropic abnormalities, including over- or under-developed palea, various numbers of floral organs and spikelet indeterminacy
osa-miR5506	None	None	floral organ	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	Summarily, these results demonstrated that rice-specific osa-miR5506 plays an essential role in the regulation of floral organ number, spikelet determinacy and female gametophyte development in rice
osa-miR5506	None	None	floral organ number	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	Summarily, these results demonstrated that rice-specific osa-miR5506 plays an essential role in the regulation of floral organ number, spikelet determinacy and female gametophyte development in rice
osa-miR5506	None	None	female gametophyte development	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice	Summarily, these results demonstrated that rice-specific osa-miR5506 plays an essential role in the regulation of floral organ number, spikelet determinacy and female gametophyte development in rice
Osa-miR7695	None	None	defense	Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus.	Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus.
Osa-miR7695	None	None	defense response	Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus.	Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus.
Osa-miR7695	None	None	blast	Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus.	Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus.
OsA2	Os07g0191200	LOC_Os07g09340	nitrogen	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration
OsA2	Os07g0191200	LOC_Os07g09340	growth	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration
OsA2	Os07g0191200	LOC_Os07g09340	growth	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	We investigated the role that the OsA2 isoform plays in the total N and growth of rice (Oryza sativa)
OsA2	Os07g0191200	LOC_Os07g09340	shoot	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration
OsA2	Os07g0191200	LOC_Os07g09340	shoot	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	Three osa2 lines and control plants (transformed with an empty IRS154 vector and named IRS) were cultivated in the greenhouse to evaluate grain and shoot production
OsA2	Os07g0191200	LOC_Os07g09340	shoot	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	In the greenhouse experiments, compared with the IRS plants, the osa2 lines had lower shoot fresh weights, grain yields and SPAD values
OsA2	Os07g0191200	LOC_Os07g09340	grain	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration
OsA2	Os07g0191200	LOC_Os07g09340	grain	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	Three osa2 lines and control plants (transformed with an empty IRS154 vector and named IRS) were cultivated in the greenhouse to evaluate grain and shoot production
OsA2	Os07g0191200	LOC_Os07g09340	grain	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	In the greenhouse experiments, compared with the IRS plants, the osa2 lines had lower shoot fresh weights, grain yields and SPAD values
OsA2	Os07g0191200	LOC_Os07g09340	grain	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	These results indicate that the specific PM H+-ATPase isoform OsA2 affects the net flux of NO3-, N concentration, and grain yield
OsA2	Os07g0191200	LOC_Os07g09340	grain yield	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration
OsA2	Os07g0191200	LOC_Os07g09340	grain yield	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	In the greenhouse experiments, compared with the IRS plants, the osa2 lines had lower shoot fresh weights, grain yields and SPAD values
OsA2	Os07g0191200	LOC_Os07g09340	grain yield	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	These results indicate that the specific PM H+-ATPase isoform OsA2 affects the net flux of NO3-, N concentration, and grain yield
OsA2	Os07g0191200	LOC_Os07g09340	yield	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration
OsA2	Os07g0191200	LOC_Os07g09340	yield	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	These results indicate that the specific PM H+-ATPase isoform OsA2 affects the net flux of NO3-, N concentration, and grain yield
OsA2	Os07g0191200	LOC_Os07g09340	plasma membrane	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration
OsA2	Os07g0191200	LOC_Os07g09340	nitrate	Silencing the Oryza sativa plasma membrane H +-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration	There are 10 PM H+-ATPase isoforms in the rice genome (OsA1-OsA10), and OsA2 is highly responsive to nitrate (NO3-)
OsA3	Os12g0638700	LOC_Os12g44150	alkaline stress	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Moreover, real-time RT-PCR analysis revealed that OsDMI3 up-regulated the transcript levels of OsSOS1 and PM-H+-ATPase genes OsA3 and OsA8 in saline-alkaline stressed rice plants
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	leaf	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	development	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	development	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 These results provide a better understanding of the role of LMPA in panicle development and lesion mimic formation by regulating ROS homeostasis
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	panicle	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	panicle	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 These results provide a better understanding of the role of LMPA in panicle development and lesion mimic formation by regulating ROS homeostasis
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	ATPase	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 Molecular cloning revealed that LMPA encodes a proton pump ATPase protein that is localized in the plasma membrane and is highly expressed in leaves and panicles
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	salt	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 Moreover, physiological experiments revealed that lmpa was more sensitive to high temperatures and salt stress conditions
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	salt stress	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 Moreover, physiological experiments revealed that lmpa was more sensitive to high temperatures and salt stress conditions
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	stress	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 Moreover, physiological experiments revealed that lmpa was more sensitive to high temperatures and salt stress conditions
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	cell death	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 Cellular and histochemistry analysis indicated that the ROS accumulated and cell death occurred in lmpa
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	homeostasis	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 These results provide a better understanding of the role of LMPA in panicle development and lesion mimic formation by regulating ROS homeostasis
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	plasma membrane	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 Molecular cloning revealed that LMPA encodes a proton pump ATPase protein that is localized in the plasma membrane and is highly expressed in leaves and panicles
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	PCD	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	lesion	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	lesion	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 These results provide a better understanding of the role of LMPA in panicle development and lesion mimic formation by regulating ROS homeostasis
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	lesion mimic	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	lesion mimic	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 These results provide a better understanding of the role of LMPA in panicle development and lesion mimic formation by regulating ROS homeostasis
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	panicle development	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.
OSA7|osAHA7|AHA7|LMPA	Os04g0656100	LOC_Os04g56160	panicle development	LMPA Regulates Lesion Mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	 These results provide a better understanding of the role of LMPA in panicle development and lesion mimic formation by regulating ROS homeostasis
OsA8	Os03g0100800	LOC_Os03g01120	root	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	It is reported here that OsA8, a typical PM H(+)-ATPases gene that was predominantly expressed in roots of rice, is down-regulated by nutrient deficiency
OsA8	Os03g0100800	LOC_Os03g01120	root	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	The Osa8 mutant had a relatively smaller size and root to shoot biomass ratio, but higher ATPase activity than its wild-type counterparts under phosphorus (P) starvation conditions
OsA8	Os03g0100800	LOC_Os03g01120	root	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	Knockout of OsA8 affected the expression of several OsA genes and the high affinity phosphate transporter, OsPT6, and resulted in a higher P concentration in the roots and a lower amount of P in the shoots
OsA8	Os03g0100800	LOC_Os03g01120	root	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	These analyses demonstrate that OsA8 not only influences the uptake of P by roots, but also the translocation of P from the roots to the shoots in rice
OsA8	Os03g0100800	LOC_Os03g01120	phosphorus	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	The Osa8 mutant had a relatively smaller size and root to shoot biomass ratio, but higher ATPase activity than its wild-type counterparts under phosphorus (P) starvation conditions
OsA8	Os03g0100800	LOC_Os03g01120	phosphorus	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice
OsA8	Os03g0100800	LOC_Os03g01120	biomass	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	The Osa8 mutant had a relatively smaller size and root to shoot biomass ratio, but higher ATPase activity than its wild-type counterparts under phosphorus (P) starvation conditions
OsA8	Os03g0100800	LOC_Os03g01120	transporter	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	Knockout of OsA8 affected the expression of several OsA genes and the high affinity phosphate transporter, OsPT6, and resulted in a higher P concentration in the roots and a lower amount of P in the shoots
OsA8	Os03g0100800	LOC_Os03g01120	phosphate	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	Knockout of OsA8 affected the expression of several OsA genes and the high affinity phosphate transporter, OsPT6, and resulted in a higher P concentration in the roots and a lower amount of P in the shoots
OsA8	Os03g0100800	LOC_Os03g01120	shoot	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	The Osa8 mutant had a relatively smaller size and root to shoot biomass ratio, but higher ATPase activity than its wild-type counterparts under phosphorus (P) starvation conditions
OsA8	Os03g0100800	LOC_Os03g01120	shoot	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	Knockout of OsA8 affected the expression of several OsA genes and the high affinity phosphate transporter, OsPT6, and resulted in a higher P concentration in the roots and a lower amount of P in the shoots
OsA8	Os03g0100800	LOC_Os03g01120	shoot	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	These analyses demonstrate that OsA8 not only influences the uptake of P by roots, but also the translocation of P from the roots to the shoots in rice
OsA8	Os03g0100800	LOC_Os03g01120	alkaline stress	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Moreover, real-time RT-PCR analysis revealed that OsDMI3 up-regulated the transcript levels of OsSOS1 and PM-H+-ATPase genes OsA3 and OsA8 in saline-alkaline stressed rice plants
OsAAA-ATPase1	Os03g0802500	LOC_Os03g58790	resistance	Rice OsAAA-ATPase1 is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.	Overexpression of OsAAA-ATPase1 significantly enhanced pathogenesis-related gene expression and the resistance to M
OsAAA-ATPase1	Os03g0802500	LOC_Os03g58790	ATPase	Rice OsAAA-ATPase1 is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.	Recombinant OsAAA-ATPase1 synthesized in Escherichia coli showed ATPase activity
OsAAA-ATPase1	Os03g0802500	LOC_Os03g58790	defense	Rice OsAAA-ATPase1 is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.	Here, we report the functional analysis of OsAAA-ATPase1 in rice's defense response to M
OsAAA-ATPase1	Os03g0802500	LOC_Os03g58790	defense response	Rice OsAAA-ATPase1 is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.	Here, we report the functional analysis of OsAAA-ATPase1 in rice's defense response to M
OsAAA-ATPase1	Os03g0802500	LOC_Os03g58790	salicylic acid	Rice OsAAA-ATPase1 is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.	Rice OsAAA-ATPase1 is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.
OsAAA-ATPase1	Os03g0802500	LOC_Os03g58790	salicylic acid	Rice OsAAA-ATPase1 is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.	OsAAA-ATPase1 transcription was induced by exogenous treatment with a functional analogue of salicylic acid (SA), benzothiadiazole (BTH), but not by other plant hormones tested
OsAAA-ATPase1	Os03g0802500	LOC_Os03g58790	blast	Rice OsAAA-ATPase1 is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.	Rice OsAAA-ATPase1 is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.
OsAAE3	Os04g0683700	LOC_Os04g58710	anther	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	In addition, OsAAE3 over-expression repressed the floret development, exhibiting dramatically twisted glume and decreased fertility rate of anther
OsAAE3	Os04g0683700	LOC_Os04g58710	development	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.
OsAAE3	Os04g0683700	LOC_Os04g58710	blast	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.
OsAAE3	Os04g0683700	LOC_Os04g58710	blast	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	Taken together, OsAAE3 functioned as a negative regulator in rice blast resistance, floret development, and lignin biosynthesis
OsAAE3	Os04g0683700	LOC_Os04g58710	magnaporthe oryzae	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	In the present study, we identified an AMPBP OsAAE3 from a previous analysis of early responsive genes in rice during Magnaporthe oryzae infection
OsAAE3	Os04g0683700	LOC_Os04g58710	fertility	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	In addition, OsAAE3 over-expression repressed the floret development, exhibiting dramatically twisted glume and decreased fertility rate of anther
OsAAE3	Os04g0683700	LOC_Os04g58710	blast resistance	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.
OsAAE3	Os04g0683700	LOC_Os04g58710	blast resistance	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	Taken together, OsAAE3 functioned as a negative regulator in rice blast resistance, floret development, and lignin biosynthesis
OsAAE3	Os04g0683700	LOC_Os04g58710	lignin	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.
OsAAE3	Os04g0683700	LOC_Os04g58710	lignin	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	Taken together, OsAAE3 functioned as a negative regulator in rice blast resistance, floret development, and lignin biosynthesis
OsAAE3	Os04g0683700	LOC_Os04g58710	reactive oxygen species	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	Moreover, OsAAE3 over-expression resulted in increased content of H2O2, leading to programmed cell-death induced by reactive oxygen species (ROS)
OsAAE3	Os04g0683700	LOC_Os04g58710	lignin biosynthesis	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.
OsAAE3	Os04g0683700	LOC_Os04g58710	lignin biosynthesis	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	Taken together, OsAAE3 functioned as a negative regulator in rice blast resistance, floret development, and lignin biosynthesis
OsAAP1	Os07g0134000	LOC_Os07g04180	nitrogen	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Transcriptome analysis of Osaap1 further demonstrated that OsAAP1 may affect the nitrogen transport and metabolism, auxin, cytokinin and strigolactone signaling in regulating rice tillering
OsAAP1	Os07g0134000	LOC_Os07g04180	tillering	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Compared with the wild type ZH11, OsAAP1 overexpressing (OE) lines exhibited increased filled grain numbers as a result of enhanced tillering while RNA interference (RNAi) and CRISPR (Osaap1) knockout lines showed the opposite phenotype
OsAAP1	Os07g0134000	LOC_Os07g04180	tillering	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Transcriptome analysis of Osaap1 further demonstrated that OsAAP1 may affect the nitrogen transport and metabolism, auxin, cytokinin and strigolactone signaling in regulating rice tillering
OsAAP1	Os07g0134000	LOC_Os07g04180	growth	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.
OsAAP1	Os07g0134000	LOC_Os07g04180	growth	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Here, we show that OsAAP1 (Amino Acid Permease 1) functions as a positive regulator of growth and grain yield in rice
OsAAP1	Os07g0134000	LOC_Os07g04180	growth	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Taken together, these results support that increasing neutral amino acid uptake and reallocation via OsAAP1 could improve growth and grain yield in rice
OsAAP1	Os07g0134000	LOC_Os07g04180	grain	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.
OsAAP1	Os07g0134000	LOC_Os07g04180	grain	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Here, we show that OsAAP1 (Amino Acid Permease 1) functions as a positive regulator of growth and grain yield in rice
OsAAP1	Os07g0134000	LOC_Os07g04180	grain	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Compared with the wild type ZH11, OsAAP1 overexpressing (OE) lines exhibited increased filled grain numbers as a result of enhanced tillering while RNA interference (RNAi) and CRISPR (Osaap1) knockout lines showed the opposite phenotype
OsAAP1	Os07g0134000	LOC_Os07g04180	grain	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Taken together, these results support that increasing neutral amino acid uptake and reallocation via OsAAP1 could improve growth and grain yield in rice
OsAAP1	Os07g0134000	LOC_Os07g04180	grain number	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Compared with the wild type ZH11, OsAAP1 overexpressing (OE) lines exhibited increased filled grain numbers as a result of enhanced tillering while RNA interference (RNAi) and CRISPR (Osaap1) knockout lines showed the opposite phenotype
OsAAP1	Os07g0134000	LOC_Os07g04180	grain yield	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.
OsAAP1	Os07g0134000	LOC_Os07g04180	grain yield	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Here, we show that OsAAP1 (Amino Acid Permease 1) functions as a positive regulator of growth and grain yield in rice
OsAAP1	Os07g0134000	LOC_Os07g04180	grain yield	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Taken together, these results support that increasing neutral amino acid uptake and reallocation via OsAAP1 could improve growth and grain yield in rice
OsAAP1	Os07g0134000	LOC_Os07g04180	yield	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.
OsAAP1	Os07g0134000	LOC_Os07g04180	yield	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Here, we show that OsAAP1 (Amino Acid Permease 1) functions as a positive regulator of growth and grain yield in rice
OsAAP1	Os07g0134000	LOC_Os07g04180	yield	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Taken together, these results support that increasing neutral amino acid uptake and reallocation via OsAAP1 could improve growth and grain yield in rice
OsAAP1	Os07g0134000	LOC_Os07g04180	cytokinin	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Transcriptome analysis of Osaap1 further demonstrated that OsAAP1 may affect the nitrogen transport and metabolism, auxin, cytokinin and strigolactone signaling in regulating rice tillering
OsAAP1	Os07g0134000	LOC_Os07g04180	transporter	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.
OsAAP1	Os07g0134000	LOC_Os07g04180	plasma membrane	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	We found that the OsAAP1 gene is highly expressed in rice axillary buds, leaves, and young panicles and that the OsAAP1 protein is localized to both the plasma membrane and the nuclear membrane
OsAAP1	Os07g0134000	LOC_Os07g04180	strigolactone	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	Transcriptome analysis of Osaap1 further demonstrated that OsAAP1 may affect the nitrogen transport and metabolism, auxin, cytokinin and strigolactone signaling in regulating rice tillering
OsAAP1	Os07g0134000	LOC_Os07g04180	amino acid transporter	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.	The amino acid transporter OsAAP1 mediates growth and grain yield by regulating neutral amino acids uptake and reallocation in Oryza sativa.
OsAAP15	Os12g0181600	LOC_Os12g08130	grain	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	 Overexpression of OsAAP15 in the field significantly increased primary and secondary branches, filled grain number, and grain yield by regulating the concentrations of amino acids Tyr and Val in the panicle
OsAAP15	Os12g0181600	LOC_Os12g08130	panicle	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	 Altered expression of key N-response amino acid transporter gene OsAAP15 positively regulated panicle branching at low N concentrations, however, OsAAP15 negatively influenced it at high N concentrations
OsAAP15	Os12g0181600	LOC_Os12g08130	panicle	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	 Overexpression of OsAAP15 in the field significantly increased primary and secondary branches, filled grain number, and grain yield by regulating the concentrations of amino acids Tyr and Val in the panicle
OsAAP15	Os12g0181600	LOC_Os12g08130	grain number	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	 Overexpression of OsAAP15 in the field significantly increased primary and secondary branches, filled grain number, and grain yield by regulating the concentrations of amino acids Tyr and Val in the panicle
OsAAP15	Os12g0181600	LOC_Os12g08130	grain yield	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	 Overexpression of OsAAP15 in the field significantly increased primary and secondary branches, filled grain number, and grain yield by regulating the concentrations of amino acids Tyr and Val in the panicle
OsAAP15	Os12g0181600	LOC_Os12g08130	yield	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	 Overexpression of OsAAP15 in the field significantly increased primary and secondary branches, filled grain number, and grain yield by regulating the concentrations of amino acids Tyr and Val in the panicle
OsAAP15	Os12g0181600	LOC_Os12g08130	transporter	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	 Altered expression of key N-response amino acid transporter gene OsAAP15 positively regulated panicle branching at low N concentrations, however, OsAAP15 negatively influenced it at high N concentrations
OsAAP15	Os12g0181600	LOC_Os12g08130	branching	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	 Altered expression of key N-response amino acid transporter gene OsAAP15 positively regulated panicle branching at low N concentrations, however, OsAAP15 negatively influenced it at high N concentrations
OsAAP15	Os12g0181600	LOC_Os12g08130	amino acid transporter	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	 Altered expression of key N-response amino acid transporter gene OsAAP15 positively regulated panicle branching at low N concentrations, however, OsAAP15 negatively influenced it at high N concentrations
OsAAP3	Os06g0556000	LOC_Os06g36180	nitrogen	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	However, RNAi of OsAAP3 decreased significantly Arg, Lys, Asp, and Thr concentrations to a small extent, and thus promoted bud outgrowth, increased significantly tiller numbers and effective panicle numbers per plant, and further enhanced significantly grain yield and nitrogen use efficiency (NUE)
OsAAP3	Os06g0556000	LOC_Os06g36180	tillering	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Elevated expression of OsAAP3 in transgenic plants resulted in significantly higher amino acid concentrations of Lys, Arg, His, Asp, Ala, Gln, Gly, Thr and Tyr, and inhibited bud outgrowth and rice tillering
OsAAP3	Os06g0556000	LOC_Os06g36180	panicle	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	However, RNAi of OsAAP3 decreased significantly Arg, Lys, Asp, and Thr concentrations to a small extent, and thus promoted bud outgrowth, increased significantly tiller numbers and effective panicle numbers per plant, and further enhanced significantly grain yield and nitrogen use efficiency (NUE)
OsAAP3	Os06g0556000	LOC_Os06g36180	grain	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.
OsAAP3	Os06g0556000	LOC_Os06g36180	grain	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	In this study, we demonstrated that inhibiting expression of the rice amino acid transporter OsAAP3 increased grain yield due to a formation of larger numbers of tillers as a result of increased bud outgrowth
OsAAP3	Os06g0556000	LOC_Os06g36180	grain	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	However, RNAi of OsAAP3 decreased significantly Arg, Lys, Asp, and Thr concentrations to a small extent, and thus promoted bud outgrowth, increased significantly tiller numbers and effective panicle numbers per plant, and further enhanced significantly grain yield and nitrogen use efficiency (NUE)
OsAAP3	Os06g0556000	LOC_Os06g36180	grain	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	We generated knockout-lines of OsAAP3 on Japonica ZH11 and KY131 using CRISPR technology and found that grain yield could be increased significantly
OsAAP3	Os06g0556000	LOC_Os06g36180	grain	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	These results suggest that manipulation of OsAAP3 expression could be used to increase grain yield in rice
OsAAP3	Os06g0556000	LOC_Os06g36180	tiller	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.
OsAAP3	Os06g0556000	LOC_Os06g36180	tiller	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	However, RNAi of OsAAP3 decreased significantly Arg, Lys, Asp, and Thr concentrations to a small extent, and thus promoted bud outgrowth, increased significantly tiller numbers and effective panicle numbers per plant, and further enhanced significantly grain yield and nitrogen use efficiency (NUE)
OsAAP3	Os06g0556000	LOC_Os06g36180	grain yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.
OsAAP3	Os06g0556000	LOC_Os06g36180	grain yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	In this study, we demonstrated that inhibiting expression of the rice amino acid transporter OsAAP3 increased grain yield due to a formation of larger numbers of tillers as a result of increased bud outgrowth
OsAAP3	Os06g0556000	LOC_Os06g36180	grain yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	However, RNAi of OsAAP3 decreased significantly Arg, Lys, Asp, and Thr concentrations to a small extent, and thus promoted bud outgrowth, increased significantly tiller numbers and effective panicle numbers per plant, and further enhanced significantly grain yield and nitrogen use efficiency (NUE)
OsAAP3	Os06g0556000	LOC_Os06g36180	grain yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	We generated knockout-lines of OsAAP3 on Japonica ZH11 and KY131 using CRISPR technology and found that grain yield could be increased significantly
OsAAP3	Os06g0556000	LOC_Os06g36180	grain yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	These results suggest that manipulation of OsAAP3 expression could be used to increase grain yield in rice
OsAAP3	Os06g0556000	LOC_Os06g36180	yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.
OsAAP3	Os06g0556000	LOC_Os06g36180	yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	In this study, we demonstrated that inhibiting expression of the rice amino acid transporter OsAAP3 increased grain yield due to a formation of larger numbers of tillers as a result of increased bud outgrowth
OsAAP3	Os06g0556000	LOC_Os06g36180	yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	However, RNAi of OsAAP3 decreased significantly Arg, Lys, Asp, and Thr concentrations to a small extent, and thus promoted bud outgrowth, increased significantly tiller numbers and effective panicle numbers per plant, and further enhanced significantly grain yield and nitrogen use efficiency (NUE)
OsAAP3	Os06g0556000	LOC_Os06g36180	yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	We generated knockout-lines of OsAAP3 on Japonica ZH11 and KY131 using CRISPR technology and found that grain yield could be increased significantly
OsAAP3	Os06g0556000	LOC_Os06g36180	yield	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	These results suggest that manipulation of OsAAP3 expression could be used to increase grain yield in rice
OsAAP3	Os06g0556000	LOC_Os06g36180	transporter	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.
OsAAP3	Os06g0556000	LOC_Os06g36180	transporter	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	In this study, we demonstrated that inhibiting expression of the rice amino acid transporter OsAAP3 increased grain yield due to a formation of larger numbers of tillers as a result of increased bud outgrowth
OsAAP3	Os06g0556000	LOC_Os06g36180	tiller number	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.
OsAAP3	Os06g0556000	LOC_Os06g36180	tiller number	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	However, RNAi of OsAAP3 decreased significantly Arg, Lys, Asp, and Thr concentrations to a small extent, and thus promoted bud outgrowth, increased significantly tiller numbers and effective panicle numbers per plant, and further enhanced significantly grain yield and nitrogen use efficiency (NUE)
OsAAP3	Os06g0556000	LOC_Os06g36180	amino acid transporter	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.
OsAAP3	Os06g0556000	LOC_Os06g36180	amino acid transporter	Blocking Amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	In this study, we demonstrated that inhibiting expression of the rice amino acid transporter OsAAP3 increased grain yield due to a formation of larger numbers of tillers as a result of increased bud outgrowth
OsAAP3	Os06g0556000	LOC_Os06g36180	leaf	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway
OsAAP3	Os06g0556000	LOC_Os06g36180	leaf senescence	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway
OsAAP3	Os06g0556000	LOC_Os06g36180	senescence	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway
OsAAP3	Os06g0556000	LOC_Os06g36180	lesion	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway
OsAAP3	Os06g0556000	LOC_Os06g36180	lesion mimic	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway	Altered Expression of OsAAP3 Influences Rice Lesion Mimic and Leaf Senescence by Regulating Arginine Transport and Nitric Oxide Pathway
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	nitrogen	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	Transcriptome analysis further demonstrated that OsAAP4 may affect nitrogen transport and metabolism, and auxin, cytokinin signaling in regulating rice tillering
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	tillering	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	tillering	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	Overexpression of two different splicing variants of OsAAP4 in Japonica ZH11 significantly increased rice tillering and grain yield as result of enhancing the neutral amino acid concentrations of Val, Pro, Thr and Leu
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	tillering	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	Transcriptome analysis further demonstrated that OsAAP4 may affect nitrogen transport and metabolism, and auxin, cytokinin signaling in regulating rice tillering
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	grain	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	grain	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	RESULTS: In this study, we demonstrate that OsAAP4 promoter sequences are divergent between Indica and Japonica, with higher expression in the former, which produces more tillers and higher grain yield than does Japonica
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	grain	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	Overexpression of two different splicing variants of OsAAP4 in Japonica ZH11 significantly increased rice tillering and grain yield as result of enhancing the neutral amino acid concentrations of Val, Pro, Thr and Leu
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	grain	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	CONCLUSION: Our results suggested that OsAAP4 contributes to rice tiller and grain yield by regulating neutral amino acid allocation through two different splicing variants and that OsAAP4 might have potential applications in rice breeding
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	tiller	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	CONCLUSION: Our results suggested that OsAAP4 contributes to rice tiller and grain yield by regulating neutral amino acid allocation through two different splicing variants and that OsAAP4 might have potential applications in rice breeding
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	grain yield	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	grain yield	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	RESULTS: In this study, we demonstrate that OsAAP4 promoter sequences are divergent between Indica and Japonica, with higher expression in the former, which produces more tillers and higher grain yield than does Japonica
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	grain yield	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	Overexpression of two different splicing variants of OsAAP4 in Japonica ZH11 significantly increased rice tillering and grain yield as result of enhancing the neutral amino acid concentrations of Val, Pro, Thr and Leu
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	grain yield	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	CONCLUSION: Our results suggested that OsAAP4 contributes to rice tiller and grain yield by regulating neutral amino acid allocation through two different splicing variants and that OsAAP4 might have potential applications in rice breeding
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	yield	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	yield	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	RESULTS: In this study, we demonstrate that OsAAP4 promoter sequences are divergent between Indica and Japonica, with higher expression in the former, which produces more tillers and higher grain yield than does Japonica
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	yield	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	Overexpression of two different splicing variants of OsAAP4 in Japonica ZH11 significantly increased rice tillering and grain yield as result of enhancing the neutral amino acid concentrations of Val, Pro, Thr and Leu
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	yield	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	CONCLUSION: Our results suggested that OsAAP4 contributes to rice tiller and grain yield by regulating neutral amino acid allocation through two different splicing variants and that OsAAP4 might have potential applications in rice breeding
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	cytokinin	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	Transcriptome analysis further demonstrated that OsAAP4 may affect nitrogen transport and metabolism, and auxin, cytokinin signaling in regulating rice tillering
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	transporter	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	breeding	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	CONCLUSION: Our results suggested that OsAAP4 contributes to rice tiller and grain yield by regulating neutral amino acid allocation through two different splicing variants and that OsAAP4 might have potential applications in rice breeding
OsAAP4|OsAAP4a	Os12g0194900	LOC_Os12g09300	amino acid transporter	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.
OsAAP5	Os01g0878400	LOC_Os01g65660	leaf	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Lower expression of OsAAP5 in the young leaf blade in indica varieties than in japonica varieties was associated with more tillers in indica than in japonica
OsAAP5	Os01g0878400	LOC_Os01g65660	grain	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.
OsAAP5	Os01g0878400	LOC_Os01g65660	grain	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Downregulation of OsAAP5 expression in japonica using RNA interference (Ri) and CRISPR led to increases in tiller number and grain yield, while OsAAP5 overexpression (OE) had the opposite effect
OsAAP5	Os01g0878400	LOC_Os01g65660	grain	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Thus, OsAAP5 could regulate tiller bud outgrowth by affecting cytokinin levels, and knockout of OsAAP5 could be valuable for japonica breeding programs seeking high yield and grain quality
OsAAP5	Os01g0878400	LOC_Os01g65660	tiller	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.
OsAAP5	Os01g0878400	LOC_Os01g65660	tiller	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Downregulation of OsAAP5 expression in japonica using RNA interference (Ri) and CRISPR led to increases in tiller number and grain yield, while OsAAP5 overexpression (OE) had the opposite effect
OsAAP5	Os01g0878400	LOC_Os01g65660	tiller	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Thus, OsAAP5 could regulate tiller bud outgrowth by affecting cytokinin levels, and knockout of OsAAP5 could be valuable for japonica breeding programs seeking high yield and grain quality
OsAAP5	Os01g0878400	LOC_Os01g65660	grain yield	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.
OsAAP5	Os01g0878400	LOC_Os01g65660	grain yield	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Downregulation of OsAAP5 expression in japonica using RNA interference (Ri) and CRISPR led to increases in tiller number and grain yield, while OsAAP5 overexpression (OE) had the opposite effect
OsAAP5	Os01g0878400	LOC_Os01g65660	yield	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.
OsAAP5	Os01g0878400	LOC_Os01g65660	yield	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Thus, OsAAP5 could regulate tiller bud outgrowth by affecting cytokinin levels, and knockout of OsAAP5 could be valuable for japonica breeding programs seeking high yield and grain quality
OsAAP5	Os01g0878400	LOC_Os01g65660	cytokinin	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Thus, OsAAP5 could regulate tiller bud outgrowth by affecting cytokinin levels, and knockout of OsAAP5 could be valuable for japonica breeding programs seeking high yield and grain quality
OsAAP5	Os01g0878400	LOC_Os01g65660	breeding	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Thus, OsAAP5 could regulate tiller bud outgrowth by affecting cytokinin levels, and knockout of OsAAP5 could be valuable for japonica breeding programs seeking high yield and grain quality
OsAAP5	Os01g0878400	LOC_Os01g65660	tiller number	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.
OsAAP5	Os01g0878400	LOC_Os01g65660	tiller number	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Downregulation of OsAAP5 expression in japonica using RNA interference (Ri) and CRISPR led to increases in tiller number and grain yield, while OsAAP5 overexpression (OE) had the opposite effect
OsAAP5	Os01g0878400	LOC_Os01g65660	quality	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Thus, OsAAP5 could regulate tiller bud outgrowth by affecting cytokinin levels, and knockout of OsAAP5 could be valuable for japonica breeding programs seeking high yield and grain quality
OsAAP5	Os01g0878400	LOC_Os01g65660	tiller bud outgrowth	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Thus, OsAAP5 could regulate tiller bud outgrowth by affecting cytokinin levels, and knockout of OsAAP5 could be valuable for japonica breeding programs seeking high yield and grain quality
OsAAP5	Os01g0878400	LOC_Os01g65660	grain quality	The amino acid permease OsAAP5 regulates tiller number and grain yield in rice.	Thus, OsAAP5 could regulate tiller bud outgrowth by affecting cytokinin levels, and knockout of OsAAP5 could be valuable for japonica breeding programs seeking high yield and grain quality
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	grain protein content	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	nutritional quality	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	quality	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	grain protein	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	grain	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	amino acid transporter	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	root	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	glutelin	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	prolamin	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	globulin	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	albumin	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsAAP6|qPC1	Os01g0878700	LOC_Os01g65670	starch	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
OsABA1|OSZEP1	Os04g0448900	LOC_Os04g37619	anther	ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice	The differences in endogenous ABA levels in Doongara and R31 correlated with differences in expression of the ABA biosynthetic genes encoding zeaxanthin epoxidase (OSZEP1) and 9-cis-epoxycarotenoid dioxygenase (OSNCED2, OSNCED3) in anthers
OsABA1|OSZEP1	Os04g0448900	LOC_Os04g37619	drought	Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene	Osaba1, a strong viviparous mutant with wilty phenotype, displayed low abscisic acid level and almost no further increase in its levels upon drought
OsABA1|OSZEP1	Os04g0448900	LOC_Os04g37619	ABA	ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice	The differences in endogenous ABA levels in Doongara and R31 correlated with differences in expression of the ABA biosynthetic genes encoding zeaxanthin epoxidase (OSZEP1) and 9-cis-epoxycarotenoid dioxygenase (OSNCED2, OSNCED3) in anthers
OsABA2	Os03g0810800	LOC_Os03g59610	gibberellin	Functional characterization of xanthoxin dehydrogenase in rice.	Moreover, expression of OsABA2 in an Arabidopsis aba2 mutant rescued the aba2 mutant phenotypes, characterized by reduced growth, increased water loss, and germination in the presence of paclobutrazol, a gibberellin biosynthesis inhibitor or high concentration of glucose
OsABA2	Os03g0810800	LOC_Os03g59610	 ABA 	Functional characterization of xanthoxin dehydrogenase in rice.	Expression analysis of OsABA2 mRNA showed that the transcript level did not change in response to treatment with ABA or dehydration
OsABA2	Os03g0810800	LOC_Os03g59610	 ABA 	Functional characterization of xanthoxin dehydrogenase in rice.	These results indicate that OsABA2 is a rice XanDH that functions in ABA biosynthesis
OsABA2	Os03g0810800	LOC_Os03g59610	ABA	Functional characterization of xanthoxin dehydrogenase in rice.	Expression analysis of OsABA2 mRNA showed that the transcript level did not change in response to treatment with ABA or dehydration
OsABA2	Os03g0810800	LOC_Os03g59610	ABA	Functional characterization of xanthoxin dehydrogenase in rice.	These results indicate that OsABA2 is a rice XanDH that functions in ABA biosynthesis
OsABA2	Os03g0810800	LOC_Os03g59610	gibberellin biosynthesis	Functional characterization of xanthoxin dehydrogenase in rice.	Moreover, expression of OsABA2 in an Arabidopsis aba2 mutant rescued the aba2 mutant phenotypes, characterized by reduced growth, increased water loss, and germination in the presence of paclobutrazol, a gibberellin biosynthesis inhibitor or high concentration of glucose
OsABA2	Os03g0810800	LOC_Os03g59610	map-based cloning	Mutation in Rice Abscisic Acid2 Results in Cell Death, Enhanced Disease-Resistance, Altered Seed Dormancy and Development.	 Map-based cloning identified a G-to-A point mutation resulting in a D-to-N substitution at the amino acid position 110 of OsABA2 (LOC_Os03g59610) in lmm9150
OsABA2	Os03g0810800	LOC_Os03g59610	 ABA 	Mutation in Rice Abscisic Acid2 Results in Cell Death, Enhanced Disease-Resistance, Altered Seed Dormancy and Development.	 Consistent with the function of OsABA2 in ABA biosynthesis, ABA level in the lmm9150 mutant was significantly reduced
OsABA2	Os03g0810800	LOC_Os03g59610	ABA	Mutation in Rice Abscisic Acid2 Results in Cell Death, Enhanced Disease-Resistance, Altered Seed Dormancy and Development.	 Consistent with the function of OsABA2 in ABA biosynthesis, ABA level in the lmm9150 mutant was significantly reduced
OsABA2	Os03g0810800	LOC_Os03g59610	ABA biosynthesis	Mutation in Rice Abscisic Acid2 Results in Cell Death, Enhanced Disease-Resistance, Altered Seed Dormancy and Development.	 Consistent with the function of OsABA2 in ABA biosynthesis, ABA level in the lmm9150 mutant was significantly reduced
OsABA2	Os03g0810800	LOC_Os03g59610	Kinase	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 We also found that OsABA2 has feedback regulation on OsMPK1 kinase activity
OsABA2	Os03g0810800	LOC_Os03g59610	kinase	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 We also found that OsABA2 has feedback regulation on OsMPK1 kinase activity
OsABA2	Os03g0810800	LOC_Os03g59610	drought	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Finally, genetic analysis showed that OsABA2 can enhance the sensitivity of rice to ABA and the tolerance of rice to drought and salt stress
OsABA2	Os03g0810800	LOC_Os03g59610	salt	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Finally, genetic analysis showed that OsABA2 can enhance the sensitivity of rice to ABA and the tolerance of rice to drought and salt stress
OsABA2	Os03g0810800	LOC_Os03g59610	tolerance	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Finally, genetic analysis showed that OsABA2 can enhance the sensitivity of rice to ABA and the tolerance of rice to drought and salt stress
OsABA2	Os03g0810800	LOC_Os03g59610	ABA	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Further research reveals that OsMPK1 and OsABA2 coordinately regulate the biosynthesis of ABA, and phosphorylation of OsABA2 at Ser197 by OsMPK1 plays a crucial role in regulating the biosynthesis of ABA
OsABA2	Os03g0810800	LOC_Os03g59610	ABA	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Finally, genetic analysis showed that OsABA2 can enhance the sensitivity of rice to ABA and the tolerance of rice to drought and salt stress
OsABA2	Os03g0810800	LOC_Os03g59610	salt stress	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Finally, genetic analysis showed that OsABA2 can enhance the sensitivity of rice to ABA and the tolerance of rice to drought and salt stress
OsABA2	Os03g0810800	LOC_Os03g59610	stress	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Finally, genetic analysis showed that OsABA2 can enhance the sensitivity of rice to ABA and the tolerance of rice to drought and salt stress
OsABA2	Os03g0810800	LOC_Os03g59610	abscisic acid	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.
OsABA2	Os03g0810800	LOC_Os03g59610	dehydrogenase	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Here, by using yeast two-hybrid assay and firefly luciferase complementary imaging assay, we show that OsMPK1 physically interact with a short-chain dehydrogenase protein OsABA2
OsABA2	Os03g0810800	LOC_Os03g59610	 ABA 	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Finally, genetic analysis showed that OsABA2 can enhance the sensitivity of rice to ABA and the tolerance of rice to drought and salt stress
OsABA2	Os03g0810800	LOC_Os03g59610	abscisic acid biosynthesis	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ethylene	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Treatment of aerobic seedlings with ethylene and its precursor, 1-aminocyclopropane-1-carboxylate (ACC), rapidly induced the expression of OsABA8ox1, but the ethylene treatment did not strongly affect the expression of ABA biosynthetic genes
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ethylene	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Moreover, pre-treatment with 1-methylcyclopropene (1-MCP), a potent inhibitor of ethylene action, partially suppressed induction of OsABA8ox1 expression under submergence
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ethylene	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Together, these results indicate that the rapid decrease in ABA levels in submerged rice shoots is controlled partly by ethylene-induced expression of OsABA8ox1 and partly by ethylene-independent suppression of genes involved in the biosynthesis of ABA
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ethylene	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice
OsABA8ox1	Os02g0703600	LOC_Os02g47470	shoot	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Together, these results indicate that the rapid decrease in ABA levels in submerged rice shoots is controlled partly by ethylene-induced expression of OsABA8ox1 and partly by ethylene-independent suppression of genes involved in the biosynthesis of ABA
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ABA	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	The oxidation of ABA to PA is catalyzed by ABA 8'-hydroxylase, which is possibly encoded by three genes (OsABA8ox1, -2 and -3) in rice
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ABA	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	The ABA 8'-hydroxylase activity was confirmed in microsomes from yeast expressing OsABA8ox1
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ABA	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Treatment of aerobic seedlings with ethylene and its precursor, 1-aminocyclopropane-1-carboxylate (ACC), rapidly induced the expression of OsABA8ox1, but the ethylene treatment did not strongly affect the expression of ABA biosynthetic genes
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ABA	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	The ABA level was found to be negatively correlated with OsABA8ox1 expression under ACC or 1-MCP treatment
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ABA	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Together, these results indicate that the rapid decrease in ABA levels in submerged rice shoots is controlled partly by ethylene-induced expression of OsABA8ox1 and partly by ethylene-independent suppression of genes involved in the biosynthesis of ABA
OsABA8ox1	Os02g0703600	LOC_Os02g47470	ABA	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice
OsABA8ox1	Os02g0703600	LOC_Os02g47470	seedling	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Treatment of aerobic seedlings with ethylene and its precursor, 1-aminocyclopropane-1-carboxylate (ACC), rapidly induced the expression of OsABA8ox1, but the ethylene treatment did not strongly affect the expression of ABA biosynthetic genes
OsABA8ox1	Os02g0703600	LOC_Os02g47470	submergence	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	The mRNA level of OsABA8ox1, but not the mRNA levels of other OsABA8ox genes, increased dramatically within 1 h after submergence
OsABA8ox1	Os02g0703600	LOC_Os02g47470	submergence	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Moreover, pre-treatment with 1-methylcyclopropene (1-MCP), a potent inhibitor of ethylene action, partially suppressed induction of OsABA8ox1 expression under submergence
OsABA8ox1	Os02g0703600	LOC_Os02g47470	submergence	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice	Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice
OsABA8ox2|OsCYP707A6	Os08g0472800	LOC_Os08g36860	copper	Copper suppresses abscisic acid catabolism and catalase activity, and inhibits seed germination of rice	Quantitative real-time PCR (qRT-PCR) revealed that Cu treatment reduced the expression of OsABA8ox2, a key gene of ABA catabolism in rice seeds.
OsABA8ox2|OsCYP707A6	Os08g0472800	LOC_Os08g36860	ABA catabolism	Copper suppresses abscisic acid catabolism and catalase activity, and inhibits seed germination of rice	Quantitative real-time PCR (qRT-PCR) revealed that Cu treatment reduced the expression of OsABA8ox2, a key gene of ABA catabolism in rice seeds.
OsABA8ox2|OsCYP707A6	Os08g0472800	LOC_Os08g36860	seed	Copper suppresses abscisic acid catabolism and catalase activity, and inhibits seed germination of rice	Quantitative real-time PCR (qRT-PCR) revealed that Cu treatment reduced the expression of OsABA8ox2, a key gene of ABA catabolism in rice seeds.
OsABA8ox3	Os09g0457100	LOC_Os09g28390	seed	Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis	Further experiments indicated that the expression of OsABA8ox3, a key gene in ABA catabolism and encoding ABA 8'-hydroxylase in rice, was significantly increased during the first 6 h of imbibition, which was consistent with the decline of ABA content in the imbibed seeds
OsABA8ox3	Os09g0457100	LOC_Os09g28390	ABA	Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis	Further experiments indicated that the expression of OsABA8ox3, a key gene in ABA catabolism and encoding ABA 8'-hydroxylase in rice, was significantly increased during the first 6 h of imbibition, which was consistent with the decline of ABA content in the imbibed seeds
OsABA8ox3	Os09g0457100	LOC_Os09g28390	oxidative stress	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	Enzyme activity analysis indicated that OsABA8ox3 RNAi plants had higher superoxide dismutase (SOD) and catalase (CAT) activities and less malondialdehyde (MDA) content than those of wild type when the plants were exposed to dehydration treatment, indicating a better anti-oxidative stress capability and less membrane damage
OsABA8ox3	Os09g0457100	LOC_Os09g28390	drought	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	However, OsABA8ox3 RNAi lines showed significant improvement in drought stress tolerance while the overexpression seedlings were hypersensitive to drought stress when compared with wild type in terms of plant survival rates after 10 days of unwatering
OsABA8ox3	Os09g0457100	LOC_Os09g28390	drought	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	We therefore conclude that that OsABA8ox3 gene plays an important role in controlling ABA level and drought stress resistance in rice
OsABA8ox3	Os09g0457100	LOC_Os09g28390	ABA	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	Expression of OsABA8ox3 was promptly induced by rehydration after PEG-mimic dehydration, a tendency opposite to the changes of ABA level
OsABA8ox3	Os09g0457100	LOC_Os09g28390	ABA	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	We therefore conclude that that OsABA8ox3 gene plays an important role in controlling ABA level and drought stress resistance in rice
OsABA8ox3	Os09g0457100	LOC_Os09g28390	tolerance	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	However, OsABA8ox3 RNAi lines showed significant improvement in drought stress tolerance while the overexpression seedlings were hypersensitive to drought stress when compared with wild type in terms of plant survival rates after 10 days of unwatering
OsABA8ox3	Os09g0457100	LOC_Os09g28390	stress	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	However, OsABA8ox3 RNAi lines showed significant improvement in drought stress tolerance while the overexpression seedlings were hypersensitive to drought stress when compared with wild type in terms of plant survival rates after 10 days of unwatering
OsABA8ox3	Os09g0457100	LOC_Os09g28390	stress	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	Enzyme activity analysis indicated that OsABA8ox3 RNAi plants had higher superoxide dismutase (SOD) and catalase (CAT) activities and less malondialdehyde (MDA) content than those of wild type when the plants were exposed to dehydration treatment, indicating a better anti-oxidative stress capability and less membrane damage
OsABA8ox3	Os09g0457100	LOC_Os09g28390	stress	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	We therefore conclude that that OsABA8ox3 gene plays an important role in controlling ABA level and drought stress resistance in rice
OsABA8ox3	Os09g0457100	LOC_Os09g28390	ABA	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	Expression of OsABA8ox3 was promptly induced by rehydration after PEG-mimic dehydration, a tendency opposite to the changes of ABA level
OsABA8ox3	Os09g0457100	LOC_Os09g28390	ABA	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	We therefore conclude that that OsABA8ox3 gene plays an important role in controlling ABA level and drought stress resistance in rice
OsABA8ox3	Os09g0457100	LOC_Os09g28390	drought stress	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	However, OsABA8ox3 RNAi lines showed significant improvement in drought stress tolerance while the overexpression seedlings were hypersensitive to drought stress when compared with wild type in terms of plant survival rates after 10 days of unwatering
OsABA8ox3	Os09g0457100	LOC_Os09g28390	drought stress	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	We therefore conclude that that OsABA8ox3 gene plays an important role in controlling ABA level and drought stress resistance in rice
OsABA8ox3	Os09g0457100	LOC_Os09g28390	drought stress	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	However, OsABA8ox3 RNAi lines showed significant improvement in drought stress tolerance while the overexpression seedlings were hypersensitive to drought stress when compared with wild type in terms of plant survival rates after 10 days of unwatering
OsABA8ox3	Os09g0457100	LOC_Os09g28390	drought stress	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	We therefore conclude that that OsABA8ox3 gene plays an important role in controlling ABA level and drought stress resistance in rice
OsABA8ox3	Os09g0457100	LOC_Os09g28390	stress tolerance	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	However, OsABA8ox3 RNAi lines showed significant improvement in drought stress tolerance while the overexpression seedlings were hypersensitive to drought stress when compared with wild type in terms of plant survival rates after 10 days of unwatering
OsABA8ox3	Os09g0457100	LOC_Os09g28390	seedlings	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	However, OsABA8ox3 RNAi lines showed significant improvement in drought stress tolerance while the overexpression seedlings were hypersensitive to drought stress when compared with wild type in terms of plant survival rates after 10 days of unwatering
OsABA8ox3	Os09g0457100	LOC_Os09g28390	seedlings	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	LEA genes, were enhanced with higher transcript levels in OsABA8ox3 RNAi transgenic seedlings
OsABA8ox3	Os09g0457100	LOC_Os09g28390	resistance	A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice.	We therefore conclude that that OsABA8ox3 gene plays an important role in controlling ABA level and drought stress resistance in rice
OsABAR1	Os04g0526800	LOC_Os04g44500	seedlings	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	Furthermore, OsABAR1-OX seedlings were hypersensitive to exogenous ABA, whereas Osabar1 seedlings were hyposensitive
OsABAR1	Os04g0526800	LOC_Os04g44500	drought	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	Moreover, OsABAR1 expression was up-regulated by  drought and salinity stresses
OsABAR1	Os04g0526800	LOC_Os04g44500	drought	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	These results imply that OsABAR1 is a positive regulator of the ABA pathway and confirm that OsABAR1 improves rice drought and salt tolerance via an ABA-dependent pathway
OsABAR1	Os04g0526800	LOC_Os04g44500	salinity	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	Moreover, OsABAR1 expression was up-regulated by  drought and salinity stresses
OsABAR1	Os04g0526800	LOC_Os04g44500	salt	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	These results imply that OsABAR1 is a positive regulator of the ABA pathway and confirm that OsABAR1 improves rice drought and salt tolerance via an ABA-dependent pathway
OsABAR1	Os04g0526800	LOC_Os04g44500	tolerance	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	These results imply that OsABAR1 is a positive regulator of the ABA pathway and confirm that OsABAR1 improves rice drought and salt tolerance via an ABA-dependent pathway
OsABAR1	Os04g0526800	LOC_Os04g44500	ABA	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	In turn, OsABAR1 regulated the expression of ABA metabolic genes and responsive genes
OsABAR1	Os04g0526800	LOC_Os04g44500	ABA	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	These results imply that OsABAR1 is a positive regulator of the ABA pathway and confirm that OsABAR1 improves rice drought and salt tolerance via an ABA-dependent pathway
OsABAR1	Os04g0526800	LOC_Os04g44500	salt tolerance	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	These results imply that OsABAR1 is a positive regulator of the ABA pathway and confirm that OsABAR1 improves rice drought and salt tolerance via an ABA-dependent pathway
OsABAR1	Os04g0526800	LOC_Os04g44500	cytoplasm	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	The OsABAR1 protein was localized in  the cytoplasm and nucleus
OsABAR1	Os04g0526800	LOC_Os04g44500	nucleus	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	The OsABAR1 protein was localized in  the cytoplasm and nucleus
OsABAR1	Os04g0526800	LOC_Os04g44500	salinity stress	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	Moreover, OsABAR1 expression was up-regulated by  drought and salinity stresses
OsABAR1	Os04g0526800	LOC_Os04g44500	abscisic acid	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	We further analyzed the involvement of OsABAR1 in the abscisic acid (ABA) signaling pathway
OsABAR1	Os04g0526800	LOC_Os04g44500	ABA	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	The OsABAR1 expression level was up-regulated by ABA
OsABAR1	Os04g0526800	LOC_Os04g44500	ABA	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	In turn, OsABAR1 regulated the expression of ABA metabolic genes and responsive genes
OsABAR1	Os04g0526800	LOC_Os04g44500	ABA	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	These results imply that OsABAR1 is a positive regulator of the ABA pathway and confirm that OsABAR1 improves rice drought and salt tolerance via an ABA-dependent pathway
OsABC1-2	Os02g0575500	LOC_Os02g36570	chloroplast	Characterization of an Abc1 kinase family gene OsABC1-2 conferring enhanced tolerance to dark-induced stress in rice	The mutated gene, designated OsABC1-2, is expressed primarily in green tissues and/or organs and encodes a protein localized in chloroplast envelope
OsABC1-2	Os02g0575500	LOC_Os02g36570	chloroplast	Characterization of an Abc1 kinase family gene OsABC1-2 conferring enhanced tolerance to dark-induced stress in rice	Phylogenetic analysis revealed that the plant Abc1 proteins could be divided into three subgroups and OsAbc1-2 resides in a subgroup with potential chloroplast origin
OsABCB14	Os04g0459000	LOC_Os04g38570	auxin transport	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.)	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.)
OsABCB14	Os04g0459000	LOC_Os04g38570	iron homeostasis	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.)	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.)
OsABCB14	Os04g0459000	LOC_Os04g38570	iron	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.)	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.)
OsABCB14	Os04g0459000	LOC_Os04g38570	auxin	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.)	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.)
OsABCB14	Os04g0459000	LOC_Os04g38570	plasma membrane	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.)	OsABCB14 is localized at the plasma membrane, pointing to an important directionality under physiological conditions.
OsABCC1|MRP1	Os04g0620000	LOC_Os04g52900	arsenic accumulation	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain
OsABCC1|MRP1	Os04g0620000	LOC_Os04g52900	grain	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain
OsABCC1|MRP1	Os04g0620000	LOC_Os04g52900	ABC transporter	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain
OsABCC1|MRP1	Os04g0620000	LOC_Os04g52900	As transport	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain
OsABCC1|MRP1	Os04g0620000	LOC_Os04g52900	As transport	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain	Taken together, our results indicate that OsABCC1 limits As transport to the grains by sequestering As in the vacuoles of the phloem companion cells of the nodes in rice.
OsABCC1|MRP1	Os04g0620000	LOC_Os04g52900	phloem	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain	Taken together, our results indicate that OsABCC1 limits As transport to the grains by sequestering As in the vacuoles of the phloem companion cells of the nodes in rice.
OsABCC7	Os04g0588700	LOC_Os04g49900	xylem	The C-type ATP-Binding Cassette Transporter OsABCC7 Is Involved in the Root-to-Shoot Translocation of Arsenic in Rice.	Transgenic rice plants expressing OsABCC7 Promoter-GUS (glucuronidase) suggest that the gene was predominantly expressed in the xylem parenchyma cells in the stele region of the primary and lateral roots
OsABCC7	Os04g0588700	LOC_Os04g49900	xylem	The C-type ATP-Binding Cassette Transporter OsABCC7 Is Involved in the Root-to-Shoot Translocation of Arsenic in Rice.	Knockout of OsABCC7 in rice significantly decreased As concentration in the xylem sap and As concentration in the shoots, but had little effect on root As concentration
OsABCC7	Os04g0588700	LOC_Os04g49900	root	The C-type ATP-Binding Cassette Transporter OsABCC7 Is Involved in the Root-to-Shoot Translocation of Arsenic in Rice.	Knockout of OsABCC7 in rice significantly decreased As concentration in the xylem sap and As concentration in the shoots, but had little effect on root As concentration
OsABCC7	Os04g0588700	LOC_Os04g49900	transporter	The C-type ATP-Binding Cassette Transporter OsABCC7 Is Involved in the Root-to-Shoot Translocation of Arsenic in Rice.	The C-type ATP-Binding Cassette Transporter OsABCC7 Is Involved in the Root-to-Shoot Translocation of Arsenic in Rice.
OsABCC7	Os04g0588700	LOC_Os04g49900	lateral root	The C-type ATP-Binding Cassette Transporter OsABCC7 Is Involved in the Root-to-Shoot Translocation of Arsenic in Rice.	Transgenic rice plants expressing OsABCC7 Promoter-GUS (glucuronidase) suggest that the gene was predominantly expressed in the xylem parenchyma cells in the stele region of the primary and lateral roots
OsABCC7	Os04g0588700	LOC_Os04g49900	xylem parenchyma	The C-type ATP-Binding Cassette Transporter OsABCC7 Is Involved in the Root-to-Shoot Translocation of Arsenic in Rice.	Transgenic rice plants expressing OsABCC7 Promoter-GUS (glucuronidase) suggest that the gene was predominantly expressed in the xylem parenchyma cells in the stele region of the primary and lateral roots
OsABCG15	Os06g0607700	LOC_Os06g40550	sterility	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Based on map-based cloning and sequence analysis, we identified a 1,459-bp deletion in an adenosine triphosphate (ATP)-binding cassette (ABC) transporter gene, OsABCG15, causing abnormal anthers and male sterility
OsABCG15	Os06g0607700	LOC_Os06g40550	tapetum	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Consistently, histological analysis showed that osabcg15 mutants developed obvious abnormality in postmeiotic tapetum degeneration, leading to rapid degredation of young microspores
OsABCG15	Os06g0607700	LOC_Os06g40550	anther	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Based on map-based cloning and sequence analysis, we identified a 1,459-bp deletion in an adenosine triphosphate (ATP)-binding cassette (ABC) transporter gene, OsABCG15, causing abnormal anthers and male sterility
OsABCG15	Os06g0607700	LOC_Os06g40550	anther	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Expression analysis showed that OsABCG15 is expressed specifically in developmental anthers from stage 8 (meiosis II stage) to stage 10 (late microspore stage)
OsABCG15	Os06g0607700	LOC_Os06g40550	anther	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
OsABCG15	Os06g0607700	LOC_Os06g40550	anther	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice
OsABCG15	Os06g0607700	LOC_Os06g40550	fertility	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice
OsABCG15	Os06g0607700	LOC_Os06g40550	meiotic	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Consistently, histological analysis showed that osabcg15 mutants developed obvious abnormality in postmeiotic tapetum degeneration, leading to rapid degredation of young microspores
OsABCG15	Os06g0607700	LOC_Os06g40550	cuticle	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
OsABCG15	Os06g0607700	LOC_Os06g40550	transporter	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Based on map-based cloning and sequence analysis, we identified a 1,459-bp deletion in an adenosine triphosphate (ATP)-binding cassette (ABC) transporter gene, OsABCG15, causing abnormal anthers and male sterility
OsABCG15	Os06g0607700	LOC_Os06g40550	transporter	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice
OsABCG15	Os06g0607700	LOC_Os06g40550	microspore	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Expression analysis showed that OsABCG15 is expressed specifically in developmental anthers from stage 8 (meiosis II stage) to stage 10 (late microspore stage)
OsABCG15	Os06g0607700	LOC_Os06g40550	microspore	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Consistently, histological analysis showed that osabcg15 mutants developed obvious abnormality in postmeiotic tapetum degeneration, leading to rapid degredation of young microspores
OsABCG15	Os06g0607700	LOC_Os06g40550	pollen	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
OsABCG15	Os06g0607700	LOC_Os06g40550	pollen	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	The results suggest that OsABCG15 plays a critical role in exine formation and pollen development, similar to the homologous gene of AtABCG26 in Arabidopsis
OsABCG15	Os06g0607700	LOC_Os06g40550	pollen	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice
OsABCG15	Os06g0607700	LOC_Os06g40550	tapetal	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
OsABCG15	Os06g0607700	LOC_Os06g40550	meiosis	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Expression analysis showed that OsABCG15 is expressed specifically in developmental anthers from stage 8 (meiosis II stage) to stage 10 (late microspore stage)
OsABCG15	Os06g0607700	LOC_Os06g40550	anther development	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice
OsABCG15	Os06g0607700	LOC_Os06g40550	pollen	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.
OsABCG15	Os06g0607700	LOC_Os06g40550	pollen	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	An ABC transporter gene ( OsABCG15 ) was proven to be involved in pollen development in rice
OsABCG15	Os06g0607700	LOC_Os06g40550	pollen	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	This osabcg15 mutant failed to produce any viable pollen and was completely male sterile
OsABCG15	Os06g0607700	LOC_Os06g40550	pollen	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	Histological analysis indicated that osabcg15 exhibited an undeveloped anther cuticle, enlarged middle layer, abnormal Ubisch body development, tapetum degeneration with a falling apart style, and collapsed pollen grains without detectable exine
OsABCG15	Os06g0607700	LOC_Os06g40550	pollen	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	Our results suggested that OsABCG15 played an essential role in the formation of the rice anther cuticle and pollen exine
OsABCG15	Os06g0607700	LOC_Os06g40550	anther	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.
OsABCG15	Os06g0607700	LOC_Os06g40550	anther	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	Histological analysis indicated that osabcg15 exhibited an undeveloped anther cuticle, enlarged middle layer, abnormal Ubisch body development, tapetum degeneration with a falling apart style, and collapsed pollen grains without detectable exine
OsABCG15	Os06g0607700	LOC_Os06g40550	anther	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	Our results suggested that OsABCG15 played an essential role in the formation of the rice anther cuticle and pollen exine
OsABCG15	Os06g0607700	LOC_Os06g40550	transporter	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	An ABC transporter gene ( OsABCG15 ) was proven to be involved in pollen development in rice
OsABCG15	Os06g0607700	LOC_Os06g40550	sterile	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	This osabcg15 mutant failed to produce any viable pollen and was completely male sterile
OsABCG15	Os06g0607700	LOC_Os06g40550	cuticle	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.
OsABCG15	Os06g0607700	LOC_Os06g40550	cuticle	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	Our results suggested that OsABCG15 played an essential role in the formation of the rice anther cuticle and pollen exine
OsABCG15	Os06g0607700	LOC_Os06g40550	tapetum	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	Histological analysis indicated that osabcg15 exhibited an undeveloped anther cuticle, enlarged middle layer, abnormal Ubisch body development, tapetum degeneration with a falling apart style, and collapsed pollen grains without detectable exine
OsABCG15	Os06g0607700	LOC_Os06g40550	development	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	An ABC transporter gene ( OsABCG15 ) was proven to be involved in pollen development in rice
OsABCG15	Os06g0607700	LOC_Os06g40550	pollen exine formation	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice
OsABCG18	Os08g0167000	LOC_Os08g07010	leaf	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	OsABCG18 encodes a plasma membrane protein and is primarily expressed in the vascular tissues of the root, stem and leaf midribs
OsABCG18	Os08g0167000	LOC_Os08g07010	stem	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	OsABCG18 encodes a plasma membrane protein and is primarily expressed in the vascular tissues of the root, stem and leaf midribs
OsABCG18	Os08g0167000	LOC_Os08g07010	shoot	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	While the mutation reduced the root-derived cytokinins in the shoot and grain yield, overexpression of OsABCG18 significantly increased cytokinins in the shoot and improved grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	shoot	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	The findings for OsABCG18 as a transporter for long-distance transport of cytokinin provide new insights into the cytokinin transport mechanism and a novel strategy to increase cytokinins in the shoot and promote grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	grain	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.
OsABCG18	Os08g0167000	LOC_Os08g07010	grain	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	While the mutation reduced the root-derived cytokinins in the shoot and grain yield, overexpression of OsABCG18 significantly increased cytokinins in the shoot and improved grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	grain	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	The findings for OsABCG18 as a transporter for long-distance transport of cytokinin provide new insights into the cytokinin transport mechanism and a novel strategy to increase cytokinins in the shoot and promote grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	grain yield	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.
OsABCG18	Os08g0167000	LOC_Os08g07010	grain yield	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	While the mutation reduced the root-derived cytokinins in the shoot and grain yield, overexpression of OsABCG18 significantly increased cytokinins in the shoot and improved grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	grain yield	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	The findings for OsABCG18 as a transporter for long-distance transport of cytokinin provide new insights into the cytokinin transport mechanism and a novel strategy to increase cytokinins in the shoot and promote grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	yield	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.
OsABCG18	Os08g0167000	LOC_Os08g07010	yield	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	While the mutation reduced the root-derived cytokinins in the shoot and grain yield, overexpression of OsABCG18 significantly increased cytokinins in the shoot and improved grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	yield	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	The findings for OsABCG18 as a transporter for long-distance transport of cytokinin provide new insights into the cytokinin transport mechanism and a novel strategy to increase cytokinins in the shoot and promote grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	cytokinin	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	The cytokinin profiling, 14C-tZ tracer and xylem-sap assays demonstrated that the shootward transport of the root-derived cytokinins was significantly suppressed in the osabcg18 mutants
OsABCG18	Os08g0167000	LOC_Os08g07010	cytokinin	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	The findings for OsABCG18 as a transporter for long-distance transport of cytokinin provide new insights into the cytokinin transport mechanism and a novel strategy to increase cytokinins in the shoot and promote grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	transporter	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.
OsABCG18	Os08g0167000	LOC_Os08g07010	transporter	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	The findings for OsABCG18 as a transporter for long-distance transport of cytokinin provide new insights into the cytokinin transport mechanism and a novel strategy to increase cytokinins in the shoot and promote grain yield
OsABCG18	Os08g0167000	LOC_Os08g07010	plasma membrane	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	OsABCG18 encodes a plasma membrane protein and is primarily expressed in the vascular tissues of the root, stem and leaf midribs
OsABCG18	Os08g0167000	LOC_Os08g07010	ABC transporter	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.	ABC Transporter OsABCG18 Controls the Shootward Transport of Cytokinins and Grain Yield in Rice.
OsABCG25	Os10g0442900|Os10g0442950	LOC_Os10g30610	transporter	An ABC Transporter Is Involved in the Silicon-Induced Formation of Casparian Bands in the Exodermis of Rice.	Investigation of these genes by means of overexpression (OE) and knockout (KO) mutants revealed the contribution of the ABC transporter (OsABCG25) to CB formation in the exodermis, which was also reflected in the expression of other OsABCG25 in the Si-promoted formation of CB genes related to the phenylpropanoid pathway, such as phenylalanine-ammonia-lyase, diacylglycerol O-acyltransferase and 4-coumarate-CoA ligase
OsABCG25	Os10g0442900|Os10g0442950	LOC_Os10g30610	ABC transporter	An ABC Transporter Is Involved in the Silicon-Induced Formation of Casparian Bands in the Exodermis of Rice.	Investigation of these genes by means of overexpression (OE) and knockout (KO) mutants revealed the contribution of the ABC transporter (OsABCG25) to CB formation in the exodermis, which was also reflected in the expression of other OsABCG25 in the Si-promoted formation of CB genes related to the phenylpropanoid pathway, such as phenylalanine-ammonia-lyase, diacylglycerol O-acyltransferase and 4-coumarate-CoA ligase
OsABCG26	Os10g0494300	LOC_Os10g35180	pollen	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Here, we report the significant role of OsABCG26 in regulating the development of anther cuticle and pollen exine together with OsABCG15 in rice
OsABCG26	Os10g0494300	LOC_Os10g35180	pollen	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	osabcg26 osabcg15 double mutant displays an almost complete absence of anther cuticle and pollen exine, similar to that of osabcg15 single mutant
OsABCG26	Os10g0494300	LOC_Os10g35180	pollen	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Taken together, we propose that OsABCG26 and OsABCG15 collaboratively regulate rice male reproduction: OsABCG26 is mainly responsible for the transport of lipidic molecules from tapetal cells to anther wall layers, while OsABCG15 mainly is responsible for the export of lipidic molecules from the tapetal cells to anther locules for pollen exine development
OsABCG26	Os10g0494300	LOC_Os10g35180	anther	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Here, we report the significant role of OsABCG26 in regulating the development of anther cuticle and pollen exine together with OsABCG15 in rice
OsABCG26	Os10g0494300	LOC_Os10g35180	anther	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Cytological and chemical analysis indicate that osabcg26 shows reduced transport of lipidic molecules from tapetal cells for anther cuticle development
OsABCG26	Os10g0494300	LOC_Os10g35180	anther	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Supportively, the localization of OsABCG26 is on the plasma membrane of the anther wall layers
OsABCG26	Os10g0494300	LOC_Os10g35180	anther	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	osabcg26 osabcg15 double mutant displays an almost complete absence of anther cuticle and pollen exine, similar to that of osabcg15 single mutant
OsABCG26	Os10g0494300	LOC_Os10g35180	anther	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Taken together, we propose that OsABCG26 and OsABCG15 collaboratively regulate rice male reproduction: OsABCG26 is mainly responsible for the transport of lipidic molecules from tapetal cells to anther wall layers, while OsABCG15 mainly is responsible for the export of lipidic molecules from the tapetal cells to anther locules for pollen exine development
OsABCG26	Os10g0494300	LOC_Os10g35180	development	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Here, we report the significant role of OsABCG26 in regulating the development of anther cuticle and pollen exine together with OsABCG15 in rice
OsABCG26	Os10g0494300	LOC_Os10g35180	development	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Cytological and chemical analysis indicate that osabcg26 shows reduced transport of lipidic molecules from tapetal cells for anther cuticle development
OsABCG26	Os10g0494300	LOC_Os10g35180	development	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Taken together, we propose that OsABCG26 and OsABCG15 collaboratively regulate rice male reproduction: OsABCG26 is mainly responsible for the transport of lipidic molecules from tapetal cells to anther wall layers, while OsABCG15 mainly is responsible for the export of lipidic molecules from the tapetal cells to anther locules for pollen exine development
OsABCG26	Os10g0494300	LOC_Os10g35180	cuticle	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Here, we report the significant role of OsABCG26 in regulating the development of anther cuticle and pollen exine together with OsABCG15 in rice
OsABCG26	Os10g0494300	LOC_Os10g35180	cuticle	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Cytological and chemical analysis indicate that osabcg26 shows reduced transport of lipidic molecules from tapetal cells for anther cuticle development
OsABCG26	Os10g0494300	LOC_Os10g35180	cuticle	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	osabcg26 osabcg15 double mutant displays an almost complete absence of anther cuticle and pollen exine, similar to that of osabcg15 single mutant
OsABCG26	Os10g0494300	LOC_Os10g35180	plasma membrane	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Supportively, the localization of OsABCG26 is on the plasma membrane of the anther wall layers
OsABCG26	Os10g0494300	LOC_Os10g35180	tapetal	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Cytological and chemical analysis indicate that osabcg26 shows reduced transport of lipidic molecules from tapetal cells for anther cuticle development
OsABCG26	Os10g0494300	LOC_Os10g35180	tapetal	Two ATP Binding Cassette G (ABCG) Transporters, OsABCG26 and OsABCG15, Collaboratively Regulate Rice Male Reproduction.	Taken together, we propose that OsABCG26 and OsABCG15 collaboratively regulate rice male reproduction: OsABCG26 is mainly responsible for the transport of lipidic molecules from tapetal cells to anther wall layers, while OsABCG15 mainly is responsible for the export of lipidic molecules from the tapetal cells to anther locules for pollen exine development
OsABCG26	Os10g0494300	LOC_Os10g35180	growth	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Additionally, wild-type pollen tubes showed a growth defect in osabcg26 pistils, leading to low seed setting in osabcg26 cross-pollinated with the wild-type pollen
OsABCG26	Os10g0494300	LOC_Os10g35180	pollen	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Cytological analysis revealed defects in tapetal cells, lipidic Ubisch bodies, pollen exine, and anther cuticle in the osabcg26 mutant
OsABCG26	Os10g0494300	LOC_Os10g35180	pollen	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Additionally, wild-type pollen tubes showed a growth defect in osabcg26 pistils, leading to low seed setting in osabcg26 cross-pollinated with the wild-type pollen
OsABCG26	Os10g0494300	LOC_Os10g35180	pollen	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	These results indicated that OsABCG26 plays an important role in anther cuticle and pollen exine formation and pollen-pistil interactions in rice
OsABCG26	Os10g0494300	LOC_Os10g35180	anther	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	OsABCG26 was specifically expressed in the anther and pistil
OsABCG26	Os10g0494300	LOC_Os10g35180	anther	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Cytological analysis revealed defects in tapetal cells, lipidic Ubisch bodies, pollen exine, and anther cuticle in the osabcg26 mutant
OsABCG26	Os10g0494300	LOC_Os10g35180	anther	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Expression of some key genes involved in lipid metabolism and transport, such as UDT1, WDA1, CYP704B2, OsABCG15, OsC4 and OsC6, was significantly altered in osabcg26 anther, possibly due to a disturbance in the homeostasis of anther lipid metabolism and transport
OsABCG26	Os10g0494300	LOC_Os10g35180	anther	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	These results indicated that OsABCG26 plays an important role in anther cuticle and pollen exine formation and pollen-pistil interactions in rice
OsABCG26	Os10g0494300	LOC_Os10g35180	seed	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Additionally, wild-type pollen tubes showed a growth defect in osabcg26 pistils, leading to low seed setting in osabcg26 cross-pollinated with the wild-type pollen
OsABCG26	Os10g0494300	LOC_Os10g35180	homeostasis	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Expression of some key genes involved in lipid metabolism and transport, such as UDT1, WDA1, CYP704B2, OsABCG15, OsC4 and OsC6, was significantly altered in osabcg26 anther, possibly due to a disturbance in the homeostasis of anther lipid metabolism and transport
OsABCG26	Os10g0494300	LOC_Os10g35180	sterile	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Here, we characterized a rice male sterile mutant osabcg26
OsABCG26	Os10g0494300	LOC_Os10g35180	cuticle	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Cytological analysis revealed defects in tapetal cells, lipidic Ubisch bodies, pollen exine, and anther cuticle in the osabcg26 mutant
OsABCG26	Os10g0494300	LOC_Os10g35180	cuticle	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	These results indicated that OsABCG26 plays an important role in anther cuticle and pollen exine formation and pollen-pistil interactions in rice
OsABCG26	Os10g0494300	LOC_Os10g35180	tapetal	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	Cytological analysis revealed defects in tapetal cells, lipidic Ubisch bodies, pollen exine, and anther cuticle in the osabcg26 mutant
OsABCG26	Os10g0494300	LOC_Os10g35180	pollen exine formation	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice	These results indicated that OsABCG26 plays an important role in anther cuticle and pollen exine formation and pollen-pistil interactions in rice
OsABCG3	Os01g0836600	LOC_Os01g61940	pollen	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.
OsABCG3	Os01g0836600	LOC_Os01g61940	pollen	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	Here we identified two osabcg3 allelic mutants and demonstrated that OsABCG3 was required for pollen development in rice
OsABCG3	Os01g0836600	LOC_Os01g61940	pollen	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	The expression of some genes required for pollen wall formation was examined in osabcg3 mutants
OsABCG3	Os01g0836600	LOC_Os01g61940	pollen	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	Base on the genetic and cytological analyses, OsABCG3 was proposed to transport the tapetum-produced materials essential for pollen wall formation
OsABCG3	Os01g0836600	LOC_Os01g61940	development	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.
OsABCG3	Os01g0836600	LOC_Os01g61940	development	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	Here we identified two osabcg3 allelic mutants and demonstrated that OsABCG3 was required for pollen development in rice
OsABCG3	Os01g0836600	LOC_Os01g61940	transporter	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.
OsABCG3	Os01g0836600	LOC_Os01g61940	transporter	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	OsABCG3 encodes a half-size ABCG transporter localized on the plasma membrane
OsABCG3	Os01g0836600	LOC_Os01g61940	plasma membrane	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	OsABCG3 encodes a half-size ABCG transporter localized on the plasma membrane
OsABCG3	Os01g0836600	LOC_Os01g61940	tapetum	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	Loss-function of OsABCG3 caused abnormal degradation of the tapetum
OsABCG3	Os01g0836600	LOC_Os01g61940	pollen development	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.
OsABCG3	Os01g0836600	LOC_Os01g61940	pollen development	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	Here we identified two osabcg3 allelic mutants and demonstrated that OsABCG3 was required for pollen development in rice
OsABCG3	Os01g0836600	LOC_Os01g61940	pollen wall	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	The expression of some genes required for pollen wall formation was examined in osabcg3 mutants
OsABCG3	Os01g0836600	LOC_Os01g61940	pollen wall	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	Base on the genetic and cytological analyses, OsABCG3 was proposed to transport the tapetum-produced materials essential for pollen wall formation
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	shoot	RiceABCG43Is Cd Inducible and Confers Cd Tolerance on Yeast	The OsABCG43 transcript was detected both in shoots and roots
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	root	RiceABCG43Is Cd Inducible and Confers Cd Tolerance on Yeast	The OsABCG43 transcript was detected both in shoots and roots
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	transporter	RiceABCG43Is Cd Inducible and Confers Cd Tolerance on Yeast	This study indicates that OsABCG43 is a Cd inducible-transporter gene capable of conferring Cd tolerance on yeast
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	leaf	Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.	 In addition, OsABCG43 transcripts were induced by leaf bacteria Xanthomonas oryzae pv
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	growth	Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.	 Moreover, overexpression of OsABCG43 resulted in retarded plant growth and enhanced rice sensitivity to Cd stress
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	development	Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.	 Overexpression of OsABCG43 caused Cd accumulation which inhibits photosynthesis and development and alters the antioxidant system, resulting in phytotoxicity
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	photosynthesis	Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.	 Overexpression of OsABCG43 caused Cd accumulation which inhibits photosynthesis and development and alters the antioxidant system, resulting in phytotoxicity
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	stress	Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.	 OsABCG43 was induced under Cd stress and specifically expressed in the vasculature of leaves and roots
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	stress	Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.	 Moreover, overexpression of OsABCG43 resulted in retarded plant growth and enhanced rice sensitivity to Cd stress
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	plant growth	Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.	 Moreover, overexpression of OsABCG43 resulted in retarded plant growth and enhanced rice sensitivity to Cd stress
OsABCG43|PDR5	Os07g0522500	LOC_Os07g33780	plasma membrane	Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.	 CONCLUSION: This work reveals that OsABCG43 is expressed specifically in the vascular and plasma membrane-localized OsABCG43 functions as a Cd importer
OsABCG9	Os04g0528300	LOC_Os04g44610	growth	OsABCG9 Is an Important ABC Transporter of Cuticular Wax Deposition in Rice.	Rice phenotypes with mutated OsABCG9 exhibited growth retardation and sensitivity to low humidity
OsABCG9	Os04g0528300	LOC_Os04g44610	transporter	OsABCG9 Is an Important ABC Transporter of Cuticular Wax Deposition in Rice.	OsABCG9 Is an Important ABC Transporter of Cuticular Wax Deposition in Rice.
OsABCG9	Os04g0528300	LOC_Os04g44610	cutin	OsABCG9 Is an Important ABC Transporter of Cuticular Wax Deposition in Rice.	However, OsABCG9 does not seem to be involved in cutin transportation, even though its ortholog in Arabidopsis, AtABCG11, transports both wax and cutin
OsABCG9	Os04g0528300	LOC_Os04g44610	ABC transporter	OsABCG9 Is an Important ABC Transporter of Cuticular Wax Deposition in Rice.	OsABCG9 Is an Important ABC Transporter of Cuticular Wax Deposition in Rice.
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	chloroplast	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Subcellular localization demonstrated that OsABCI8 is a chloroplast ABC transporter
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	chloroplast	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Besides defects in chloroplast development and chlorophyll biosynthesis, the mutant phenotype is accompanied by a higher accumulation of iron, suggesting that OsABCI8 is involved in iron transportation and/or homeostasis in rice
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	chloroplast	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Our results demonstrate that OsABCI8 represents a conserved ABCI protein involved in transition metals transportation and/or homeostasis and suggest an important role of the plastid-localized OsABCI8 for chloroplast development
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	development	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Besides defects in chloroplast development and chlorophyll biosynthesis, the mutant phenotype is accompanied by a higher accumulation of iron, suggesting that OsABCI8 is involved in iron transportation and/or homeostasis in rice
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	development	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Our results demonstrate that OsABCI8 represents a conserved ABCI protein involved in transition metals transportation and/or homeostasis and suggest an important role of the plastid-localized OsABCI8 for chloroplast development
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	homeostasis	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Besides defects in chloroplast development and chlorophyll biosynthesis, the mutant phenotype is accompanied by a higher accumulation of iron, suggesting that OsABCI8 is involved in iron transportation and/or homeostasis in rice
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	homeostasis	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Our results demonstrate that OsABCI8 represents a conserved ABCI protein involved in transition metals transportation and/or homeostasis and suggest an important role of the plastid-localized OsABCI8 for chloroplast development
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	transporter	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Subcellular localization demonstrated that OsABCI8 is a chloroplast ABC transporter
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	iron	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Besides defects in chloroplast development and chlorophyll biosynthesis, the mutant phenotype is accompanied by a higher accumulation of iron, suggesting that OsABCI8 is involved in iron transportation and/or homeostasis in rice
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	chloroplast development	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Besides defects in chloroplast development and chlorophyll biosynthesis, the mutant phenotype is accompanied by a higher accumulation of iron, suggesting that OsABCI8 is involved in iron transportation and/or homeostasis in rice
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	chloroplast development	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Our results demonstrate that OsABCI8 represents a conserved ABCI protein involved in transition metals transportation and/or homeostasis and suggest an important role of the plastid-localized OsABCI8 for chloroplast development
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	ABC transporter	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Subcellular localization demonstrated that OsABCI8 is a chloroplast ABC transporter
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	leaf	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	Blocking light from reaching the juvenile leaves and leaf primordia caused chloroplast deficiencies in transplanted tsc1 seedlings
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	leaf	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	TSC1 was upregulated following transplantation, and modulated the iron and copper levels, thereby regulating prolamellar body formation during the early P4 stage of leaf development
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	seedlings	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	Blocking light from reaching the juvenile leaves and leaf primordia caused chloroplast deficiencies in transplanted tsc1 seedlings
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	chloroplast	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	Blocking light from reaching the juvenile leaves and leaf primordia caused chloroplast deficiencies in transplanted tsc1 seedlings
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	leaf development	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	TSC1 was upregulated following transplantation, and modulated the iron and copper levels, thereby regulating prolamellar body formation during the early P4 stage of leaf development
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	development	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	development	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	We found that TSC1 controls plastid development in rice under dark conditions, and functions independently of light signaling
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	development	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	TSC1 was upregulated following transplantation, and modulated the iron and copper levels, thereby regulating prolamellar body formation during the early P4 stage of leaf development
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	development	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	Therefore, TSC1 is indispensable for plastid development in the absence of light, and contributes to adaptation to transplantation shock
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	transporter	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	TSC1 encodes a noncanonical ATP-binding cassette (ABC) transporter homologous to AtNAP14 and of cyanobacterial origin
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	iron	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	TSC1 was upregulated following transplantation, and modulated the iron and copper levels, thereby regulating prolamellar body formation during the early P4 stage of leaf development
OsABCI8|TSC1	Os11g0490800	LOC_Os11g29850	copper	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	TSC1 was upregulated following transplantation, and modulated the iron and copper levels, thereby regulating prolamellar body formation during the early P4 stage of leaf development
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L	Interestingly, D-allose also up-regulated expression of OsABF1, encoding a conserved bZIP transcription factor in ABA signaling, in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	salinity	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	The homozygous T-DNA insertional mutants Osabf1-1 and Osabf1-2 were more sensitive in response to drought and salinity treatments than wild type plants
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	drought	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	Expression of the OsABI5 gene was induced by abscisic acid (ABA) and high salinity, and down-regulated by drought and cold (4 degrees C) in seedlings
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	growth	Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L	These findings indicated that the phosphorylation of D-allose at C6 by hexokinase is essential and OsABF1 is involved in the signal transduction for D-allose-induced growth inhibition
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	growth	Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L	Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed germination	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	Complementation analysis revealed that the expression of OsABI5 driven by the 35S promoter could rescue ABA-insensitivity of abi5-1 during seed germination and result in hypersensitivity to ABA
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ABA 	Characterization of alternative splicing products of bZIP transcription factors OsABI5	Complementation tests and ABA (abscisic acid) hypersensitivity of Arabidopsis transgenic lines revealed the redundant function of OsABI5 splicing variants in ABA signaling
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ABA 	Characterization of alternative splicing products of bZIP transcription factors OsABI5	These results suggest that OsABI5 variants may have overlapping and distinct functions to fine tune gene expression in ABA signaling as transcription factors together with OsVP1
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	Characterization of alternative splicing products of bZIP transcription factors OsABI5	A bZIP-type transcription factor, OsABI5, undergoes alternative splicing
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	Characterization of alternative splicing products of bZIP transcription factors OsABI5	These results suggest that OsABI5 variants may have overlapping and distinct functions to fine tune gene expression in ABA signaling as transcription factors together with OsVP1
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	Characterization of alternative splicing products of bZIP transcription factors OsABI5	Characterization of alternative splicing products of bZIP transcription factors OsABI5
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	panicle	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	A bZIP transcription factor, OsABI5, was isolated from the panicle of Oryza sativa L
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	salt	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	Over-expression of OsABI5 in rice conferred high sensitivity to salt stress
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	drought	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	The homozygous T-DNA insertional mutants Osabf1-1 and Osabf1-2 were more sensitive in response to drought and salinity treatments than wild type plants
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	In our current study in rice, we have newly isolated and characterized the OsABF1 (Oryza sativa ABA responsive element binding factor 1) gene that encodes a bZIP transcription factor
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	salinity	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	Expression of the OsABI5 gene was induced by abscisic acid (ABA) and high salinity, and down-regulated by drought and cold (4 degrees C) in seedlings
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ABA 	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	In our current study in rice, we have newly isolated and characterized the OsABF1 (Oryza sativa ABA responsive element binding factor 1) gene that encodes a bZIP transcription factor
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ABA 	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	In a yeast experiment, OsABF1 was shown to bind to ABA responsive elements (ABREs) and its N-terminal region was necessary to transactivate the downstream reporter gene
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ABA 	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	Furthermore, the upregulated expression of some ABA/stress-regulated genes in response to ABA treatment was suppressed in these Osabf1 mutants
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ABA 	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	Our current results thus suggest that OsABF1 is involved in abiotic stress responses and ABA signaling in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ABA 	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	Expression of the OsABI5 gene was induced by abscisic acid (ABA) and high salinity, and down-regulated by drought and cold (4 degrees C) in seedlings
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	Complementation analysis revealed that the expression of OsABI5 driven by the 35S promoter could rescue ABA-insensitivity of abi5-1 during seed germination and result in hypersensitivity to ABA
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	salt stress	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	Over-expression of OsABI5 in rice conferred high sensitivity to salt stress
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	fertility	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	Repression of OsABI5 promoted stress tolerance and resulted in low fertility of rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	fertility	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	These results suggested that OsABI5 could regulate the adaptive stress response and plant fertility of rice as a transcription factor
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	fertility	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	abiotic stress	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	Our current results thus suggest that OsABF1 is involved in abiotic stress responses and ABA signaling in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	abiotic stress	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seedling	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	Expression of the OsABI5 gene was induced by abscisic acid (ABA) and high salinity, and down-regulated by drought and cold (4 degrees C) in seedlings
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ABA 	Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L	Interestingly, D-allose also up-regulated expression of OsABF1, encoding a conserved bZIP transcription factor in ABA signaling, in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	A bZIP transcription factor, OsABI5, was isolated from the panicle of Oryza sativa L
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	These results suggested that OsABI5 could regulate the adaptive stress response and plant fertility of rice as a transcription factor
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	drought	A Drought-inducible bZIP Transcription Factor OsABF1 Delays Reproductive Timing in Rice.	Molecular and genetic analyses demonstrate that a drought regime enhances expression of the OsABF1 gene, which indirectly suppresses expression of the Early heading date 1 (Ehd1) gene that encodes a key activator of rice flowering
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	drought	A Drought-inducible bZIP Transcription Factor OsABF1 Delays Reproductive Timing in Rice.	Furthermore, we identified a drought inducible gene named OsWRKY104 that is under the direct regulation of OsABF1
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	A Drought-inducible bZIP Transcription Factor OsABF1 Delays Reproductive Timing in Rice.	A Drought-inducible bZIP Transcription Factor OsABF1 Delays Reproductive Timing in Rice.
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	reproductive	A Drought-inducible bZIP Transcription Factor OsABF1 Delays Reproductive Timing in Rice.	A Drought-inducible bZIP Transcription Factor OsABF1 Delays Reproductive Timing in Rice.
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	heading date	A Drought-inducible bZIP Transcription Factor OsABF1 Delays Reproductive Timing in Rice.	Molecular and genetic analyses demonstrate that a drought regime enhances expression of the OsABF1 gene, which indirectly suppresses expression of the Early heading date 1 (Ehd1) gene that encodes a key activator of rice flowering
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcription factor	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	 In this study, we show that when overexpressed in transgenic rice (Oryza sativa), the bZIP transcription factor OsABF1 confers distinctly different drought-tolerance phenotypes when tethered to the transcriptional activator VP16 versus the transcriptional repressor EAR
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	drought	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	drought	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	 Analysis of the overlap between the RNA-sequencing and chromatin immunoprecipitation-sequencing data identified 242 OsABF1 target genes involved in multiple aspects of the drought response
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	tolerance	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	drought tolerance	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	transcriptional activator	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	 In this study, we show that when overexpressed in transgenic rice (Oryza sativa), the bZIP transcription factor OsABF1 confers distinctly different drought-tolerance phenotypes when tethered to the transcriptional activator VP16 versus the transcriptional repressor EAR
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	abscisic acid	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	 In addition, OsABF1 directly regulates the expression of the protein phosphatase 2C (OsPP48 and OsPP108) and bZIP (OsbZIP23, OsbZIP46, and OsbZIP72) genes, thus forming a complex feedback circuit in the drought/abscisic acid signaling pathway
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	protein phosphatase	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	 In addition, OsABF1 directly regulates the expression of the protein phosphatase 2C (OsPP48 and OsPP108) and bZIP (OsbZIP23, OsbZIP46, and OsbZIP72) genes, thus forming a complex feedback circuit in the drought/abscisic acid signaling pathway
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	growth	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 It is suggested that OsABF1 recruits RRC2-mediated H3K27me3 deposition on the SD1 promoter, thus epigenetically silencing SD1 to maintain the GA homeostasis for growth and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Here, we report the functional characterization of a GA-inducible OsABF1 in GA biosynthesis underpinning plant height and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Overexpression of OsABF1 produced a typical GA-deficient phenotype with semi-dwarf and retarded seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 It is suggested that OsABF1 recruits RRC2-mediated H3K27me3 deposition on the SD1 promoter, thus epigenetically silencing SD1 to maintain the GA homeostasis for growth and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed germination	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed germination	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Here, we report the functional characterization of a GA-inducible OsABF1 in GA biosynthesis underpinning plant height and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed germination	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Overexpression of OsABF1 produced a typical GA-deficient phenotype with semi-dwarf and retarded seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	seed germination	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 It is suggested that OsABF1 recruits RRC2-mediated H3K27me3 deposition on the SD1 promoter, thus epigenetically silencing SD1 to maintain the GA homeostasis for growth and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	gibberellin	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	homeostasis	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Meanwhile, the phenotypes could be rescued by exogenous GA(3), suggesting that OsABF1 is a key regulator of GA homeostasis
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	homeostasis	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 It is suggested that OsABF1 recruits RRC2-mediated H3K27me3 deposition on the SD1 promoter, thus epigenetically silencing SD1 to maintain the GA homeostasis for growth and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	homeostasis	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 These findings shed new insight into the functions of OsABF1 and regulatory mechanism underlying GA homeostasis in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	ga	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Here, we report the functional characterization of a GA-inducible OsABF1 in GA biosynthesis underpinning plant height and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	ga	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Meanwhile, the phenotypes could be rescued by exogenous GA(3), suggesting that OsABF1 is a key regulator of GA homeostasis
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	ga	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 OsABF1 could directly suppress the transcription of green revolution gene SD1, thus reducing the endogenous GA level in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	ga	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 It is suggested that OsABF1 recruits RRC2-mediated H3K27me3 deposition on the SD1 promoter, thus epigenetically silencing SD1 to maintain the GA homeostasis for growth and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	ga	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 These findings shed new insight into the functions of OsABF1 and regulatory mechanism underlying GA homeostasis in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	height	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	height	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Here, we report the functional characterization of a GA-inducible OsABF1 in GA biosynthesis underpinning plant height and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	plant height	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	plant height	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Here, we report the functional characterization of a GA-inducible OsABF1 in GA biosynthesis underpinning plant height and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	Gibberellin	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	GA	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Here, we report the functional characterization of a GA-inducible OsABF1 in GA biosynthesis underpinning plant height and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	GA	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Meanwhile, the phenotypes could be rescued by exogenous GA(3), suggesting that OsABF1 is a key regulator of GA homeostasis
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	GA	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 OsABF1 could directly suppress the transcription of green revolution gene SD1, thus reducing the endogenous GA level in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	GA	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 It is suggested that OsABF1 recruits RRC2-mediated H3K27me3 deposition on the SD1 promoter, thus epigenetically silencing SD1 to maintain the GA homeostasis for growth and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	GA	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 These findings shed new insight into the functions of OsABF1 and regulatory mechanism underlying GA homeostasis in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ga 	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Here, we report the functional characterization of a GA-inducible OsABF1 in GA biosynthesis underpinning plant height and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ga 	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Meanwhile, the phenotypes could be rescued by exogenous GA(3), suggesting that OsABF1 is a key regulator of GA homeostasis
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ga 	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 OsABF1 could directly suppress the transcription of green revolution gene SD1, thus reducing the endogenous GA level in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ga 	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 It is suggested that OsABF1 recruits RRC2-mediated H3K27me3 deposition on the SD1 promoter, thus epigenetically silencing SD1 to maintain the GA homeostasis for growth and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ga 	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 These findings shed new insight into the functions of OsABF1 and regulatory mechanism underlying GA homeostasis in rice
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	GA biosynthesis	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	 Here, we report the functional characterization of a GA-inducible OsABF1 in GA biosynthesis underpinning plant height and seed germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	gibberellin biosynthesis	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).	OsABF1 Represses Gibberellin Biosynthesis to Regulate Plant Height and Seed Germination in Rice (Oryza sativa L.).
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	drought	Melatonin Promotes SGT1-Involved Signals to Ameliorate Drought Stress Adaption in Rice.	 Furthermore, the upregulated expression of OsABI5 was detected in wild type (WT) under drought stress, irrespective of MT treatment, whereas OsABI5 was significantly downregulated in sgt1 and sgt1abi5 mutants
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	drought stress	Melatonin Promotes SGT1-Involved Signals to Ameliorate Drought Stress Adaption in Rice.	 Furthermore, the upregulated expression of OsABI5 was detected in wild type (WT) under drought stress, irrespective of MT treatment, whereas OsABI5 was significantly downregulated in sgt1 and sgt1abi5 mutants
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	redox homeostasis	OsSGT1 promotes melatonin-ameliorated seed tolerance to chromium stress by affecting the OsABI5-OsAPX1 transcriptional module in rice.	 Further analysis indicated that OsABI5 directly regulated the transcriptional expression of OsAPX1, whose encoding products promoted H(2) O(2) scavenging to maintain redox homeostasis, which was essential for germination
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	ABA	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 In addition, the induction of OsPRR95 by ABA partly required a functional OsRCAR10, and the ABA responsive element (ABRE)-binding factor ABSCISIC ACID INSENSITIVE5 (OsABI5) bound directly to the promoter of OsPRR95 and activated its expression, thus establishing a regulatory feedback loop between OsPRR95, OsRCAR10 and OsABI5
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	abscisic acid	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 In addition, the induction of OsPRR95 by ABA partly required a functional OsRCAR10, and the ABA responsive element (ABRE)-binding factor ABSCISIC ACID INSENSITIVE5 (OsABI5) bound directly to the promoter of OsPRR95 and activated its expression, thus establishing a regulatory feedback loop between OsPRR95, OsRCAR10 and OsABI5
OsABF1|OsABI5|OREB1|OsbZIP10	Os01g0867300	LOC_Os01g64730	 ABA 	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 In addition, the induction of OsPRR95 by ABA partly required a functional OsRCAR10, and the ABA responsive element (ABRE)-binding factor ABSCISIC ACID INSENSITIVE5 (OsABI5) bound directly to the promoter of OsPRR95 and activated its expression, thus establishing a regulatory feedback loop between OsPRR95, OsRCAR10 and OsABI5
OsABI2|OsPP2C06|OsABIL1	Os01g0583100	LOC_Os01g40094	transcription factor	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Microarray analysis of transgenic plants overexpressing OsNAP revealed that many stress-related genes were up-regulated, including OsPP2C06/OsABI2, OsPP2C09, OsPP2C68 and OsSalT, and some genes coding for stress-related transcription factors (OsDREB1A, OsMYB2, OsAP37 and OsAP59)
OsABI4	Os05g0351200	LOC_Os05g28350	abscisic acid	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	Interactions of OsTCP19 with OsABI4 and OsULT1 further suggest its function in modulation of abscisic acid pathways and chromatin structure
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	ABA	Modulation of ABA signaling by altering VxGΦL motif of PP2Cs in Oryza sativa.	Transgenic Arabidopsis plants overexpressing OsPP2C50 and OsPP2C50FM changed ABA sensitivity, validating the in vitro results
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	R protein	Modulation of ABA signaling by altering VxGΦL motif of PP2Cs in Oryza sativa.	The effects of the second and forth residues on the interaction of OsPP2C50 with several OsPYL/RCAR proteins were investigated by systematic mutagenesis
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	ABA	Modulation of ABA signaling by altering VxGΦL motif of PP2Cs in Oryza sativa.	Transgenic Arabidopsis plants overexpressing OsPP2C50 and OsPP2C50FM changed ABA sensitivity, validating the in vitro results
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	ABA	Structural determinants for pyrabactin recognition in ABA receptors in Oryza sativa.	The water-mediated interaction between the wedging Trp-259 of OsPP2C50 and pyrabactin is lost, undermining the structural integrity of the ABA receptor:co-receptor
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	ABA	Structural determinants for pyrabactin recognition in ABA receptors in Oryza sativa.	The water-mediated interaction between the wedging Trp-259 of OsPP2C50 and pyrabactin is lost, undermining the structural integrity of the ABA receptor:co-receptor
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	ABA	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	OsPP2C50 and OsPP2C53 is major negative regulators of ABA signaling regarding stomata closing in rice
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	stomatal	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	We identified that only OsPP2C50 and OsPP2C53 among 9 OsPP2CAs might be related with stomatal closure/opening signaling based on guard cell specific expression and subcellular localization
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	ABA	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	OsPP2C50 and OsPP2C53 is major negative regulators of ABA signaling regarding stomata closing in rice
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	stomata	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	OsPP2C50 and OsPP2C53 is major negative regulators of ABA signaling regarding stomata closing in rice
OsABIL3|OsPP2C50	Os05g0537400	LOC_Os05g46040	water loss	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	Transgenic rice overexpressing OsPP2C50 and OsPP2C53 showed significantly higher water loss than control
OsABP	Os06g0526600	LOC_Os06g33520	abiotic stress	A new DEAD-box helicase ATP-binding protein (OsABP) from rice is responsive to abiotic stress	In the present study, we report on the identification of a new DEAD-box helicase ATP-binding protein (OsABP) from rice which is upregulated in response e to multiple abiotic stress treatments including NaCl, dehydration, ABA, blue and red light
OsABP	Os06g0526600	LOC_Os06g33520	abiotic stress	A new DEAD-box helicase ATP-binding protein (OsABP) from rice is responsive to abiotic stress	These results imply that OsABP might perform important functions in the cellular response to specific abiotic stress
OsABP	Os06g0526600	LOC_Os06g33520	abiotic stress	A new DEAD-box helicase ATP-binding protein (OsABP) from rice is responsive to abiotic stress	A new DEAD-box helicase ATP-binding protein (OsABP) from rice is responsive to abiotic stress
OsACBP2	Os06g0115300	LOC_Os06g02490	grain	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	Herein, rice OsACBP2 was demonstrated not only to play a role in seed development and germination, but also to influence grain size
OsACBP2	Os06g0115300	LOC_Os06g02490	grain	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	When OsACBP2 function was investigated using osacbp2 mutants and transgenic rice overexpressing OsACBP2 (OsACBP2-OE), osacbp2 was retarded in germination, while OsACBP2-OEs performed better than the wild-type and vector-transformed controls, in germination, seedling growth, grain size, and grain weight
OsACBP2	Os06g0115300	LOC_Os06g02490	seedling	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	When OsACBP2 function was investigated using osacbp2 mutants and transgenic rice overexpressing OsACBP2 (OsACBP2-OE), osacbp2 was retarded in germination, while OsACBP2-OEs performed better than the wild-type and vector-transformed controls, in germination, seedling growth, grain size, and grain weight
OsACBP2	Os06g0115300	LOC_Os06g02490	development	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	Herein, rice OsACBP2 was demonstrated not only to play a role in seed development and germination, but also to influence grain size
OsACBP2	Os06g0115300	LOC_Os06g02490	seed	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	Herein, rice OsACBP2 was demonstrated not only to play a role in seed development and germination, but also to influence grain size
OsACBP2	Os06g0115300	LOC_Os06g02490	seed	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	Deletion analysis of the OsACBP2 5'-flanking region revealed five copies of the seed cis-element, Skn-I-like motif (-1486/-1482, -956/-952, -939/-935, -826/-822, and -766/-762), and the removal of any adversely affected expression in seeds, thereby providing a molecular basis for OsACBP2 expression in seeds
OsACBP2	Os06g0115300	LOC_Os06g02490	seed	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	As dietary rice bran contains beneficial bioactive components, OsACBP2 appears to be a promising candidate for enriching seed nutritional value
OsACBP2	Os06g0115300	LOC_Os06g02490	grain size	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	Herein, rice OsACBP2 was demonstrated not only to play a role in seed development and germination, but also to influence grain size
OsACBP2	Os06g0115300	LOC_Os06g02490	grain size	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	When OsACBP2 function was investigated using osacbp2 mutants and transgenic rice overexpressing OsACBP2 (OsACBP2-OE), osacbp2 was retarded in germination, while OsACBP2-OEs performed better than the wild-type and vector-transformed controls, in germination, seedling growth, grain size, and grain weight
OsACBP2	Os06g0115300	LOC_Os06g02490	endosperm	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	OsACBP2 mRNA accumulated in embryos and endosperm of germinating seeds in qRT-PCR analysis, while β-glucuronidase (GUS) assays on OsACBP2pro::GUS rice transformants showed GUS expression in embryos, as well as the scutellum and aleurone layer of germinating seeds
OsACBP2	Os06g0115300	LOC_Os06g02490	seed development	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	Herein, rice OsACBP2 was demonstrated not only to play a role in seed development and germination, but also to influence grain size
OsACBP2	Os06g0115300	LOC_Os06g02490	grain weight	The overexpression of rice ACYL-COA-BINDING PROTEIN2 increases grain size and bran oil content in transgenic rice.	When OsACBP2 function was investigated using osacbp2 mutants and transgenic rice overexpressing OsACBP2 (OsACBP2-OE), osacbp2 was retarded in germination, while OsACBP2-OEs performed better than the wild-type and vector-transformed controls, in germination, seedling growth, grain size, and grain weight
OsACBP5	Os03g0243600	LOC_Os03g14000	resistance	The overexpression of OsACBP5 protects transgenic rice against necrotrophic, hemibiotrophic and biotrophic pathogens	Herein, when OsACBP5 was overexpressed in rice, the OsACBP5-overexpressing (OsACBP5-OE) lines exhibited enhanced disease resistance against representative necrotrophic (R
OsACBP5	Os03g0243600	LOC_Os03g14000	disease	The overexpression of OsACBP5 protects transgenic rice against necrotrophic, hemibiotrophic and biotrophic pathogens	Herein, when OsACBP5 was overexpressed in rice, the OsACBP5-overexpressing (OsACBP5-OE) lines exhibited enhanced disease resistance against representative necrotrophic (R
OsACBP5	Os03g0243600	LOC_Os03g14000	disease resistance	The overexpression of OsACBP5 protects transgenic rice against necrotrophic, hemibiotrophic and biotrophic pathogens	Herein, when OsACBP5 was overexpressed in rice, the OsACBP5-overexpressing (OsACBP5-OE) lines exhibited enhanced disease resistance against representative necrotrophic (R
OsACBP6	Os03g0835600	LOC_Os03g61930	ABC transporter	Subcellular localization of rice acyl-CoA-binding proteins (ACBPs) indicates that OsACBP6::GFP is targeted to the peroxisomes.	The function of OsACBP6 was investigated by overexpressing 35S::OsACBP6 in the peroxisomal abc transporter1 (pxa1) mutant defective in peroxisomal fatty acid β-oxidation
OsACBP6	Os03g0835600	LOC_Os03g61930	leaf	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	The osacbp6 mutant showed diminished growth with reduction in root meristem activity and leaf growth
OsACBP6	Os03g0835600	LOC_Os03g61930	root	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	The osacbp6 mutant showed diminished growth with reduction in root meristem activity and leaf growth
OsACBP6	Os03g0835600	LOC_Os03g61930	growth	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	The osacbp6 mutant showed diminished growth with reduction in root meristem activity and leaf growth
OsACBP6	Os03g0835600	LOC_Os03g61930	growth	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	Disruption of OsACBP6 compromises growth and led to provoked defense response, suggesting a correlation of enhanced acyl-CoAs content with defense responses
OsACBP6	Os03g0835600	LOC_Os03g61930	defense	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	Disruption of OsACBP6 compromises growth and led to provoked defense response, suggesting a correlation of enhanced acyl-CoAs content with defense responses
OsACBP6	Os03g0835600	LOC_Os03g61930	defense response	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	Disruption of OsACBP6 compromises growth and led to provoked defense response, suggesting a correlation of enhanced acyl-CoAs content with defense responses
OsACBP6	Os03g0835600	LOC_Os03g61930	meristem	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	The osacbp6 mutant showed diminished growth with reduction in root meristem activity and leaf growth
OsACBP6	Os03g0835600	LOC_Os03g61930	homeostasis	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	Taken together, loss of OsACBP6 not only resulted in a disruption of the acyl-CoA homeostasis but also peroxidase-dependent reactive oxygen species (ROS) homeostasis
OsACBP6	Os03g0835600	LOC_Os03g61930	homeostasis	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	In contrast, osacbp6-complemented transgenic rice displayed similar phenotype to the wild type rice, supporting a role for OsACBP6 in the maintenance of the acyl-CoA pool and ROS homeostasis
OsACBP6	Os03g0835600	LOC_Os03g61930	jasmonic	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	Furthermore, quantification of plant hormones supported the findings observed in the transcriptome and an increase in jasmonic acid level occurred in osacbp6
OsACBP6	Os03g0835600	LOC_Os03g61930	jasmonic acid	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	Furthermore, quantification of plant hormones supported the findings observed in the transcriptome and an increase in jasmonic acid level occurred in osacbp6
OsACBP6	Os03g0835600	LOC_Os03g61930	reactive oxygen species	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	Taken together, loss of OsACBP6 not only resulted in a disruption of the acyl-CoA homeostasis but also peroxidase-dependent reactive oxygen species (ROS) homeostasis
OsACBP6	Os03g0835600	LOC_Os03g61930	root meristem	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice	The osacbp6 mutant showed diminished growth with reduction in root meristem activity and leaf growth
OsACCase	Os05g0295300	LOC_Os05g22940	herbicide-resistant	Base editing-mediated targeted evolution of ACCase for herbicide-resistant rice mutants	Base editing-mediated targeted evolution of ACCase for herbicide-resistant rice mutants
OsACCase	Os05g0295300	LOC_Os05g22940	herbicide	Base editing-mediated targeted evolution of ACCase for herbicide-resistant rice mutants	Base editing-mediated targeted evolution of ACCase for herbicide-resistant rice mutants
OsACCase	Os05g0295300	LOC_Os05g22940	herbicide resistance	Base editing-mediated targeted evolution of ACCase for herbicide-resistant rice mutants	Base editing-mediated targeted evolution of ACCase for herbicide-resistant rice mutants
OsACE1	Os10g0108700	LOC_Os10g01920	growth	Detoxification and catabolism of mesotrione and fomesafen facilitated by a Phase II reaction acetyltransferase in rice.	 In contrast, knocking out OsACE1 led to compromised growth fitness and intensified toxic symptoms under MTR/FSA stress and accumulation of more toxic MTR and FSA in rice
OsACE1	Os10g0108700	LOC_Os10g01920	resistance	Detoxification and catabolism of mesotrione and fomesafen facilitated by a Phase II reaction acetyltransferase in rice.	 RESULTS: OsACE1 overexpression conferred rice resistance to toxicity of MTR/FSA compared to wild-type, manifested by improved plant elongation and biomass, attenuated cellular injury, and increased chlorophyll accumulation
OsACE1	Os10g0108700	LOC_Os10g01920	stress	Detoxification and catabolism of mesotrione and fomesafen facilitated by a Phase II reaction acetyltransferase in rice.	 In contrast, knocking out OsACE1 led to compromised growth fitness and intensified toxic symptoms under MTR/FSA stress and accumulation of more toxic MTR and FSA in rice
OsACE1	Os10g0108700	LOC_Os10g01920	chlorophyll	Detoxification and catabolism of mesotrione and fomesafen facilitated by a Phase II reaction acetyltransferase in rice.	 RESULTS: OsACE1 overexpression conferred rice resistance to toxicity of MTR/FSA compared to wild-type, manifested by improved plant elongation and biomass, attenuated cellular injury, and increased chlorophyll accumulation
OsACE2	Os08g0112300	LOC_Os08g02030	growth	Acetyltransferase OsACE2 acts as a regulator to reduce the environmental risk of oxyfluorfen to rice production.	 Conversely, knocking out OsACE2 resulted in compromised growth phenotypes compared to the wild-type (WT)
OsACE2	Os08g0112300	LOC_Os08g02030	growth	Acetyltransferase OsACE2 acts as a regulator to reduce the environmental risk of oxyfluorfen to rice production.	 Collectively, OsACE2 plays a primary role in catabolizing OFF residues in rice through multiple degradation pathways and reducing OFF in its growth environment
OsACE2	Os08g0112300	LOC_Os08g02030	resistance	Acetyltransferase OsACE2 acts as a regulator to reduce the environmental risk of oxyfluorfen to rice production.	 To demonstrate the regulatory role of OsACE2 in resistance to OFF toxicity, we generated OsACE2 overexpression (OE) and knockout mutant using genetic transformation and gene-editing technologies (CRISPR/Cas9)
OsACE2	Os08g0112300	LOC_Os08g02030	oxyfluorfen	Acetyltransferase OsACE2 acts as a regulator to reduce the environmental risk of oxyfluorfen to rice production	Acetyltransferase OsACE2 acts as a regulator to reduce the environmental risk of oxyfluorfen to rice production
OsACE2	Os08g0112300	LOC_Os08g02030	pesticide oxyfluorfen	Acetyltransferase OsACE2 acts as a regulator to reduce the environmental risk of oxyfluorfen to rice production	Acetyltransferase OsACE2 acts as a regulator to reduce the environmental risk of oxyfluorfen to rice production
OsACE2	Os08g0112300	LOC_Os08g02030	acetyltransferase	Acetyltransferase OsACE2 acts as a regulator to reduce the environmental risk of oxyfluorfen to rice production	In this study, we characterized a new functional locus encoding an acetyltransferase (OsACE2) that can facilitate OFF degradation in rice.
OsACO1	Os09g0451400	LOC_Os09g27820	ethylene	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	OsEBP89, an ethylene responsive element binding protein (EREBP) and OsACO1, an ACC (1-aminocyclopropane-1-carboxylic acid) oxidase gene were enhanced in the OsEIL1 overexpressing transgenic plants
OsACO1	Os09g0451400	LOC_Os09g27820	abiotic stress	Identification and analysis of the mechanism underlying heat-inducible expression of rice aconitase 1.	In this study, we found that expression of the rice Aconitase gene OsACO1 is induced in a time-dependent manner by heat but not other typical abiotic stresses
OsACO1	Os09g0451400	LOC_Os09g27820	biotic stress	Identification and analysis of the mechanism underlying heat-inducible expression of rice aconitase 1.	In this study, we found that expression of the rice Aconitase gene OsACO1 is induced in a time-dependent manner by heat but not other typical abiotic stresses
OsACO7	Os01g0580500	LOC_Os01g39860	blast	Contribution of ethylene biosynthesis for resistance to blast fungus infection in young rice plants	These findings suggest the importance of ET biosynthesis and, consequently, the coproduct, cyanide, for HR-accompanied resistance to blast fungus in young rice plants and the contribution of induced OsACS2 and OsACO7 gene expression to it
OsACOS12	Os04g0310800	LOC_Os04g24530	pollen	OsACOS12, an orthologue of Arabidopsis acyl-CoA synthetase5, plays an important role in pollen exine formation and anther development in rice.	ACOS5 and OsACOS12 are conserved for pollen wall formation in monocot and dicot species
OsACOS12	Os04g0310800	LOC_Os04g24530	anther	OsACOS12, an orthologue of Arabidopsis acyl-CoA synthetase5, plays an important role in pollen exine formation and anther development in rice.	The localization of OsACOS12-GFP demonstrated that OsACOS12 protein is accumulated in tapetal cells and anther locules
OsACOS12	Os04g0310800	LOC_Os04g24530	sterile	OsACOS12, an orthologue of Arabidopsis acyl-CoA synthetase5, plays an important role in pollen exine formation and anther development in rice.	The osacos12 mutation caused by a pre-mature stop codon in LOC_Os04g24530 exhibits defective sexine resulting in a male sterile phenotype in rice
OsACOS12	Os04g0310800	LOC_Os04g24530	fertility	OsACOS12, an orthologue of Arabidopsis acyl-CoA synthetase5, plays an important role in pollen exine formation and anther development in rice.	OsACOS12 driven by the ACOS5 promoter could partially restore the male fertility of the acos5 mutant in Arabidopsis
OsACOS12	Os04g0310800	LOC_Os04g24530	tapetal	OsACOS12, an orthologue of Arabidopsis acyl-CoA synthetase5, plays an important role in pollen exine formation and anther development in rice.	In situ hybridization shows that OsACOS12 is expressed in tapetal cells and microspores at the transcript level
OsACOS12	Os04g0310800	LOC_Os04g24530	tapetal	OsACOS12, an orthologue of Arabidopsis acyl-CoA synthetase5, plays an important role in pollen exine formation and anther development in rice.	The localization of OsACOS12-GFP demonstrated that OsACOS12 protein is accumulated in tapetal cells and anther locules
OsACOS12	Os04g0310800	LOC_Os04g24530	pollen wall	OsACOS12, an orthologue of Arabidopsis acyl-CoA synthetase5, plays an important role in pollen exine formation and anther development in rice.	ACOS5 and OsACOS12 are conserved for pollen wall formation in monocot and dicot species
OsACOS12	Os04g0310800	LOC_Os04g24530	pollen	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Loss of function mutation of rice OsACOS12 impairs lipid metabolism-mediated anther cuticle and pollen wall formation, and interferes with tapetum programmed cell death, leading to male sterility
OsACOS12	Os04g0310800	LOC_Os04g24530	anther	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Loss of function mutation of rice OsACOS12 impairs lipid metabolism-mediated anther cuticle and pollen wall formation, and interferes with tapetum programmed cell death, leading to male sterility
OsACOS12	Os04g0310800	LOC_Os04g24530	sterility	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Loss of function mutation of rice OsACOS12 impairs lipid metabolism-mediated anther cuticle and pollen wall formation, and interferes with tapetum programmed cell death, leading to male sterility
OsACOS12	Os04g0310800	LOC_Os04g24530	cell death	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.
OsACOS12	Os04g0310800	LOC_Os04g24530	cell death	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Loss of function mutation of rice OsACOS12 impairs lipid metabolism-mediated anther cuticle and pollen wall formation, and interferes with tapetum programmed cell death, leading to male sterility
OsACOS12	Os04g0310800	LOC_Os04g24530	cuticle	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Loss of function mutation of rice OsACOS12 impairs lipid metabolism-mediated anther cuticle and pollen wall formation, and interferes with tapetum programmed cell death, leading to male sterility
OsACOS12	Os04g0310800	LOC_Os04g24530	tapetum	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.
OsACOS12	Os04g0310800	LOC_Os04g24530	tapetum	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Loss of function mutation of rice OsACOS12 impairs lipid metabolism-mediated anther cuticle and pollen wall formation, and interferes with tapetum programmed cell death, leading to male sterility
OsACOS12	Os04g0310800	LOC_Os04g24530	tapetal	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Those phenotypic changes were evident at stage 10, during which OsACOS12 had its maximum expression in tapetal cells and microspores
OsACOS12	Os04g0310800	LOC_Os04g24530	pollen wall	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Loss of function mutation of rice OsACOS12 impairs lipid metabolism-mediated anther cuticle and pollen wall formation, and interferes with tapetum programmed cell death, leading to male sterility
OsACOS12	Os04g0310800	LOC_Os04g24530	male sterility	Rice fatty acyl-CoA synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Loss of function mutation of rice OsACOS12 impairs lipid metabolism-mediated anther cuticle and pollen wall formation, and interferes with tapetum programmed cell death, leading to male sterility
OsACOS12	Os04g0310800	LOC_Os04g24530	fertility	Acyl-CoA synthetases from Physcomitrella, rice and Arabidopsis: different substrate preferences but common regulation by MS188 in sporopollenin synthesis.	A complementation test showed that OsACOS12 driven by the ACOS5 promoter could partially restore the male fertility of the acos5 mutant in Arabidopsis, while PpACOS6 did not rescue the acos5 phenotype
OsACOT	Os04g0436100	LOC_Os04g35590	grain	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	Moreover, overexpression of miR1432-resistant form of OsACOT (OXmACOT) resembled the STTM1432 plants, that is, a large margin of an increase in grain weight up to 46
OsACOT	Os04g0436100	LOC_Os04g35590	grain weight	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	Moreover, overexpression of miR1432-resistant form of OsACOT (OXmACOT) resembled the STTM1432 plants, that is, a large margin of an increase in grain weight up to 46
OsACP1	Os01g0720400	LOC_Os01g52230	phosphate	A phosphate starvation-induced acid phosphatase from Oryza sativa: phosphate regulation and transgenic expression	OsACP1 expression was up-regulated in the rice plant and in cell culture in the absence of phosphate (Pi)
OsACP1	Os01g0720400	LOC_Os01g52230	root	A phosphate starvation-induced acid phosphatase from Oryza sativa: phosphate regulation and transgenic expression	OsACP1 expression was responsive to the level of Pi supply, with transcripts of OsACP1 being abundant in Pi-deprived root
OsACP1	Os01g0720400	LOC_Os01g52230	insect	A phosphate starvation-induced acid phosphatase from Oryza sativa: phosphate regulation and transgenic expression	The OsACP1 cDNA was expressed as a 30 kDa polypeptide in baculovirus-infected insect Sf9 cells
OsACP1	Os01g0720400	LOC_Os01g52230	pi	A phosphate starvation-induced acid phosphatase from Oryza sativa: phosphate regulation and transgenic expression	The induced expression of OsACP1 was a specific response to Pi starvation, and was not affected by the deprivation of other nutrients
OsACP1	Os01g0720400	LOC_Os01g52230	pi	A phosphate starvation-induced acid phosphatase from Oryza sativa: phosphate regulation and transgenic expression	OsACP1 expression was responsive to the level of Pi supply, with transcripts of OsACP1 being abundant in Pi-deprived root
OsACP1	Os01g0720400	LOC_Os01g52230	growth	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	Overexpression or mutation of OsACP1 affected Po degradation and utilization, which further influenced plant growth and productivity under both Pi-sufficient and Pi-deficient conditions
OsACP1	Os01g0720400	LOC_Os01g52230	growth	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	We concluded that OsACP1 is an active acid phosphatase that regulates rice growth under Pi stress conditions by recycling Pi from Po in the ER and GA
OsACP1	Os01g0720400	LOC_Os01g52230	stress	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	OsACP1 expression is specifically induced in almost all cell types of leaves and roots under Pi stress conditions
OsACP1	Os01g0720400	LOC_Os01g52230	stress	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	We concluded that OsACP1 is an active acid phosphatase that regulates rice growth under Pi stress conditions by recycling Pi from Po in the ER and GA
OsACP1	Os01g0720400	LOC_Os01g52230	homeostasis	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	Moreover, overexpression of OsACP1 significantly affected intracellular Pi homeostasis and Pi starvation signalling
OsACP1	Os01g0720400	LOC_Os01g52230	plant growth	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	Overexpression or mutation of OsACP1 affected Po degradation and utilization, which further influenced plant growth and productivity under both Pi-sufficient and Pi-deficient conditions
OsACP1	Os01g0720400	LOC_Os01g52230	GA	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	We concluded that OsACP1 is an active acid phosphatase that regulates rice growth under Pi stress conditions by recycling Pi from Po in the ER and GA
OsACP1	Os01g0720400	LOC_Os01g52230	Pi	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	OsACP1 expression is specifically induced in almost all cell types of leaves and roots under Pi stress conditions
OsACP1	Os01g0720400	LOC_Os01g52230	Pi	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	Moreover, overexpression of OsACP1 significantly affected intracellular Pi homeostasis and Pi starvation signalling
OsACP1	Os01g0720400	LOC_Os01g52230	Pi	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	We concluded that OsACP1 is an active acid phosphatase that regulates rice growth under Pi stress conditions by recycling Pi from Po in the ER and GA
OsACP1	Os01g0720400	LOC_Os01g52230	phosphatase	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	OsACP1 encodes an acid phosphatase with broad Po substrates and localizes in the endoplasmic reticulum (ER) and Golgi apparatus (GA)
OsACP1	Os01g0720400	LOC_Os01g52230	phosphatase	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	Phylogenic analysis demonstrates that OsACP1 has a similar structure with human acid phosphatase PHOSPHO1
OsACP1	Os01g0720400	LOC_Os01g52230	phosphatase	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	We concluded that OsACP1 is an active acid phosphatase that regulates rice growth under Pi stress conditions by recycling Pi from Po in the ER and GA
OsACP1	Os01g0720400	LOC_Os01g52230	pi	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	OsACP1 expression is specifically induced in almost all cell types of leaves and roots under Pi stress conditions
OsACP1	Os01g0720400	LOC_Os01g52230	pi	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	Moreover, overexpression of OsACP1 significantly affected intracellular Pi homeostasis and Pi starvation signalling
OsACP1	Os01g0720400	LOC_Os01g52230	pi	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	We concluded that OsACP1 is an active acid phosphatase that regulates rice growth under Pi stress conditions by recycling Pi from Po in the ER and GA
OsACP1	Os01g0720400	LOC_Os01g52230	Pi homeostasis	Rice ACID PHOSPHATASE 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	Moreover, overexpression of OsACP1 significantly affected intracellular Pi homeostasis and Pi starvation signalling
OsACR9	Os03g0247900	LOC_Os03g14370	leaf	Cellular distribution of ACT domain repeat protein 9, a nuclear localizing protein, in rice (Oryza sativa)	In rice leaf samples, OsACR9 protein was abundant in the vascular parenchyma and mestome-sheath cells of young leaf blades at the early stage of development and in the vascular parenchyma and phloem-companion cells of mature leaf sheaths
OsACR9	Os03g0247900	LOC_Os03g14370	vascular bundle	Cellular distribution of ACT domain repeat protein 9, a nuclear localizing protein, in rice (Oryza sativa)	OsACR9 protein also showed a high level of accumulation in vascular parenchyma cells of dorsal vascular bundles and aleurone cells in young rice grains at the early stage of ripening
OsACR9	Os03g0247900	LOC_Os03g14370	root	Cellular distribution of ACT domain repeat protein 9, a nuclear localizing protein, in rice (Oryza sativa)	In rice roots, OsACR9 protein was distributed in epidermis, exodermis, sclerenchyma and vascular parenchyma cells, and its accumulation markedly increased after supply of NH(+)(4)
OsACR9	Os03g0247900	LOC_Os03g14370	grain	Cellular distribution of ACT domain repeat protein 9, a nuclear localizing protein, in rice (Oryza sativa)	OsACR9 protein also showed a high level of accumulation in vascular parenchyma cells of dorsal vascular bundles and aleurone cells in young rice grains at the early stage of ripening
OsACR9	Os03g0247900	LOC_Os03g14370	nitrogen	Cellular distribution of ACT domain repeat protein 9, a nuclear localizing protein, in rice (Oryza sativa)	In the current study, to evaluate the possible involvement of the protein OsACR9 in the Gln-sensing system related to nitrogen (N) metabolism in rice (Oryza sativa L
OsACR9	Os03g0247900	LOC_Os03g14370	sheath	Cellular distribution of ACT domain repeat protein 9, a nuclear localizing protein, in rice (Oryza sativa)	In rice leaf samples, OsACR9 protein was abundant in the vascular parenchyma and mestome-sheath cells of young leaf blades at the early stage of development and in the vascular parenchyma and phloem-companion cells of mature leaf sheaths
OsACS	Os03g0133500	LOC_Os03g04120	seedlings	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Together, this study provides new insights into the roles of ethylene in Pi-deficiency response in rice seedlings and the isoform-specific function of OsACS genes in this process
OsACS	Os03g0133500	LOC_Os03g04120	root	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Interestingly, in contrast to the known inhibitory role of ethylene on root elongation, both OsACS mutants, especially OsACS1, almost fail to promote lateral root growth in response to Pi-deficiency, demonstrating a stimulatory role of ethylene in lateral root development under Pi-deficient condition
OsACS	Os03g0133500	LOC_Os03g04120	growth	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Interestingly, in contrast to the known inhibitory role of ethylene on root elongation, both OsACS mutants, especially OsACS1, almost fail to promote lateral root growth in response to Pi-deficiency, demonstrating a stimulatory role of ethylene in lateral root development under Pi-deficient condition
OsACS	Os03g0133500	LOC_Os03g04120	development	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Interestingly, in contrast to the known inhibitory role of ethylene on root elongation, both OsACS mutants, especially OsACS1, almost fail to promote lateral root growth in response to Pi-deficiency, demonstrating a stimulatory role of ethylene in lateral root development under Pi-deficient condition
OsACS	Os03g0133500	LOC_Os03g04120	ethylene	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Interestingly, in contrast to the known inhibitory role of ethylene on root elongation, both OsACS mutants, especially OsACS1, almost fail to promote lateral root growth in response to Pi-deficiency, demonstrating a stimulatory role of ethylene in lateral root development under Pi-deficient condition
OsACS	Os03g0133500	LOC_Os03g04120	ethylene	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Together, this study provides new insights into the roles of ethylene in Pi-deficiency response in rice seedlings and the isoform-specific function of OsACS genes in this process
OsACS	Os03g0133500	LOC_Os03g04120	root development	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Interestingly, in contrast to the known inhibitory role of ethylene on root elongation, both OsACS mutants, especially OsACS1, almost fail to promote lateral root growth in response to Pi-deficiency, demonstrating a stimulatory role of ethylene in lateral root development under Pi-deficient condition
OsACS	Os03g0133500	LOC_Os03g04120	root elongation	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Interestingly, in contrast to the known inhibitory role of ethylene on root elongation, both OsACS mutants, especially OsACS1, almost fail to promote lateral root growth in response to Pi-deficiency, demonstrating a stimulatory role of ethylene in lateral root development under Pi-deficient condition
OsACS	Os03g0133500	LOC_Os03g04120	lateral root	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Interestingly, in contrast to the known inhibitory role of ethylene on root elongation, both OsACS mutants, especially OsACS1, almost fail to promote lateral root growth in response to Pi-deficiency, demonstrating a stimulatory role of ethylene in lateral root development under Pi-deficient condition
OsACS	Os03g0133500	LOC_Os03g04120	phosphate	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.	Targeted Mutagenesis of the OsACS Locus Alters Phosphate Deficiency-Induced Adaptive Responses in Rice Seedlings.
OsACS2	Os04g0578000	LOC_Os04g48850	ja	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	The antisense expression of OsNPR1 (as-npr1), which reduced the expression of the gene by 50%, increased elicited levels of JA and ethylene (ET) as well as of expression of a lipoxygenase gene OsHI-LOX and an ACC synthase gene OsACS2
OsACS2	Os04g0578000	LOC_Os04g48850	leaf	The chloroplast-localized phospholipases D alpha4 and alpha5 regulate herbivore-induced direct and indirect defenses in rice	Antisense expression of OsPLDalpha4 and -alpha5 (as-pld), which resulted in a 50% reduction of the expression of the two genes, reduced elicited levels of linolenic acid, JA, green leaf volatiles, and ethylene and attenuated the SSB-induced expression of a mitogen-activated protein kinase (OsMPK3), a lipoxygenase (OsHI-LOX), a hydroperoxide lyase (OsHPL3), as well as a 1-aminocyclopropane-1-carboxylic acid synthase (OsACS2)
OsACS2	Os04g0578000	LOC_Os04g48850	ethylene	The chloroplast-localized phospholipases D alpha4 and alpha5 regulate herbivore-induced direct and indirect defenses in rice	Antisense expression of OsPLDalpha4 and -alpha5 (as-pld), which resulted in a 50% reduction of the expression of the two genes, reduced elicited levels of linolenic acid, JA, green leaf volatiles, and ethylene and attenuated the SSB-induced expression of a mitogen-activated protein kinase (OsMPK3), a lipoxygenase (OsHI-LOX), a hydroperoxide lyase (OsHPL3), as well as a 1-aminocyclopropane-1-carboxylic acid synthase (OsACS2)
OsACS2	Os04g0578000	LOC_Os04g48850	ethylene	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	The antisense expression of OsNPR1 (as-npr1), which reduced the expression of the gene by 50%, increased elicited levels of JA and ethylene (ET) as well as of expression of a lipoxygenase gene OsHI-LOX and an ACC synthase gene OsACS2
OsACS2	Os04g0578000	LOC_Os04g48850	blast	Contribution of ethylene biosynthesis for resistance to blast fungus infection in young rice plants	These findings suggest the importance of ET biosynthesis and, consequently, the coproduct, cyanide, for HR-accompanied resistance to blast fungus in young rice plants and the contribution of induced OsACS2 and OsACO7 gene expression to it
OsACS6|SSG6	Os06g0130400	LOC_Os06g03990	pollen	Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm	The ssg6 mutation also affects SG morphologies in pollen
OsACS6|SSG6	Os06g0130400	LOC_Os06g03990	starch	Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm	SSG6 will be a useful molecular tool for future starch breeding and applications
OsACS6|SSG6	Os06g0130400	LOC_Os06g03990	map-based cloning	Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm	The SSG6 gene was identified by map-based cloning and microarray analysis
OsACS6|SSG6	Os06g0130400	LOC_Os06g03990	breeding	Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm	SSG6 will be a useful molecular tool for future starch breeding and applications
OsACT1|OsActin-1|OsActin1|OsActin	Os03g0718100	LOC_Os03g50885	actin protein	Grain setting defect 1, encoding a remorin protein, affects the grain setting in rice through regulating plasmodesmatal conductance	GSD1 functioned in affecting PD conductance by interacting with OsACT1 in association with the PD callose binding protein PDCB1.
OsACTPK1	Os02g0120100	LOC_Os02g02780	root	Lack of ACTPK1, an STY kinase, enhances ammonium uptake and use and promotes growth of rice seedlings under sufficient external ammonium.	Root cellular expression of OsACTPK1 also overlapped with that of ammonium-induced OsAMT1;1 and OsAMT1;2
OsACTPK1	Os02g0120100	LOC_Os02g02780	growth	Lack of ACTPK1, an STY kinase, enhances ammonium uptake and use and promotes growth of rice seedlings under sufficient external ammonium.	Furthermore, introduction of OsACTPK1 cDNA fused to the synthetic green fluorescence protein under its own promoter complemented growth and the HATS influx, and suggested plasma membrane localization
OsACTPK1	Os02g0120100	LOC_Os02g02780	Kinase	Lack of ACTPK1, an STY kinase, enhances ammonium uptake and use and promotes growth of rice seedlings under sufficient external ammonium.	Using transcriptome and reverse genetics in ammonium-preferring rice, we revealed the role of the serine/threonine/tyrosine protein kinase gene OsACTPK1 in down-modulation of HATS under sufficient ammonium
OsACTPK1	Os02g0120100	LOC_Os02g02780	plasma membrane	Lack of ACTPK1, an STY kinase, enhances ammonium uptake and use and promotes growth of rice seedlings under sufficient external ammonium.	Furthermore, introduction of OsACTPK1 cDNA fused to the synthetic green fluorescence protein under its own promoter complemented growth and the HATS influx, and suggested plasma membrane localization
OsACTPK1	Os02g0120100	LOC_Os02g02780	protein kinase	Lack of ACTPK1, an STY kinase, enhances ammonium uptake and use and promotes growth of rice seedlings under sufficient external ammonium.	Using transcriptome and reverse genetics in ammonium-preferring rice, we revealed the role of the serine/threonine/tyrosine protein kinase gene OsACTPK1 in down-modulation of HATS under sufficient ammonium
OsACX1	Os06g0103500	LOC_Os06g01390	jasmonic	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	It is suggested that OsACX2 is involved in providing germinating seeds with sugar and energy, while OsACX1 plays a role in the synthesis of jasmonic acid in response to wounding
OsACX1	Os06g0103500	LOC_Os06g01390	jasmonic acid	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	It is suggested that OsACX2 is involved in providing germinating seeds with sugar and energy, while OsACX1 plays a role in the synthesis of jasmonic acid in response to wounding
OsACX1	Os06g0103500	LOC_Os06g01390	seed	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	The results from reverse transcriptase-PCR indicate that OsACX1 is expressed in leaves, stems, and roots, but was barely detectable in germinating seeds
OsACX1	Os06g0103500	LOC_Os06g01390	seed	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	It is suggested that OsACX2 is involved in providing germinating seeds with sugar and energy, while OsACX1 plays a role in the synthesis of jasmonic acid in response to wounding
OsACX1	Os06g0103500	LOC_Os06g01390	stem	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	The results from reverse transcriptase-PCR indicate that OsACX1 is expressed in leaves, stems, and roots, but was barely detectable in germinating seeds
OsACX1	Os06g0103500	LOC_Os06g01390	stem	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	Only OsACX1 was upregulated by wounding, both locally and systemically
OsACX1	Os06g0103500	LOC_Os06g01390	root	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	The results from reverse transcriptase-PCR indicate that OsACX1 is expressed in leaves, stems, and roots, but was barely detectable in germinating seeds
OsACX2	Os11g0605500	LOC_Os11g39220	seed	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	OsACX2 was expressed predominantly in seeds
OsACX2	Os11g0605500	LOC_Os11g39220	seed	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	It is suggested that OsACX2 is involved in providing germinating seeds with sugar and energy, while OsACX1 plays a role in the synthesis of jasmonic acid in response to wounding
OsACX2	Os11g0605500	LOC_Os11g39220	jasmonic	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	It is suggested that OsACX2 is involved in providing germinating seeds with sugar and energy, while OsACX1 plays a role in the synthesis of jasmonic acid in response to wounding
OsACX2	Os11g0605500	LOC_Os11g39220	jasmonic acid	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding	It is suggested that OsACX2 is involved in providing germinating seeds with sugar and energy, while OsACX1 plays a role in the synthesis of jasmonic acid in response to wounding
OsADC1	Os06g0131300	LOC_Os06g04070	seedling	Molecular cloning and characterization of an arginine decarboxylase gene up-regulated by chilling stress in rice seedlings	Further, RNA gel blot analysis revealed markedly increased OsADC1 mRNA levels in rice seedling leaves subjected to chilling stress
OsADC1	Os06g0131300	LOC_Os06g04070	chilling	Molecular cloning and characterization of an arginine decarboxylase gene up-regulated by chilling stress in rice seedlings	Further, RNA gel blot analysis revealed markedly increased OsADC1 mRNA levels in rice seedling leaves subjected to chilling stress
OsADF	Os10g0125300	LOC_Os10g03660	anther	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	By qRT-PCR and RNA in situ hybridization, we further confirmed that OsADF expressed specially in tapetal cells from stage 9 to stage 12 during anther development
OsADF	Os10g0125300	LOC_Os10g03660	anther	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	Furthermore, we demonstrated that the TDR, a key regulator in controlling rice anther development, could regulate directly the expression of OsADF by binding to E-box motifs of its promoter
OsADF	Os10g0125300	LOC_Os10g03660	fertility	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	In consistent with this specific expression pattern, the RNAi transgenic lines of OsADF exhibited abnormal tapetal degeneration and aborted microspores development, which eventually grew pollens with reduced fertility
OsADF	Os10g0125300	LOC_Os10g03660	tapetal	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	By qRT-PCR and RNA in situ hybridization, we further confirmed that OsADF expressed specially in tapetal cells from stage 9 to stage 12 during anther development
OsADF	Os10g0125300	LOC_Os10g03660	tapetal	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	In consistent with this specific expression pattern, the RNAi transgenic lines of OsADF exhibited abnormal tapetal degeneration and aborted microspores development, which eventually grew pollens with reduced fertility
OsADF	Os10g0125300	LOC_Os10g03660	anther development	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	By qRT-PCR and RNA in situ hybridization, we further confirmed that OsADF expressed specially in tapetal cells from stage 9 to stage 12 during anther development
OsADF	Os10g0125300	LOC_Os10g03660	anther development	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	Furthermore, we demonstrated that the TDR, a key regulator in controlling rice anther development, could regulate directly the expression of OsADF by binding to E-box motifs of its promoter
OsADF	Os10g0125300	LOC_Os10g03660	development	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	By qRT-PCR and RNA in situ hybridization, we further confirmed that OsADF expressed specially in tapetal cells from stage 9 to stage 12 during anther development
OsADF2	Os03g0780400	LOC_Os03g56790	drought	An Actin Depolymerizing Factor from the Halophyte Smooth Cordgrass, Spartina alterniflora (SaADF2) is Superior to its Rice homolog (OsADF2) in Conferring Drought and Salt Tolerance when Constitutively Overexpressed in Rice.	An ADF isolated from a monocot halophyte, Spartina alterniflora (SaADF2) imparted significantly higher level of drought and salinity tolerance when expressed in rice than its rice homologue OsADF2
OsADF2	Os03g0780400	LOC_Os03g56790	drought	An Actin Depolymerizing Factor from the Halophyte Smooth Cordgrass, Spartina alterniflora (SaADF2) is Superior to its Rice homolog (OsADF2) in Conferring Drought and Salt Tolerance when Constitutively Overexpressed in Rice.	Rice transgenics constitutively overexpressing SaADF2 (SaADF2-OE) showed better growth, relative water content, and photosynthetic and agronomic yield under drought conditions than wild-type (WT) and OsADF2 overexpressers (OsADF2-OE)
OsADF2	Os03g0780400	LOC_Os03g56790	salinity	An Actin Depolymerizing Factor from the Halophyte Smooth Cordgrass, Spartina alterniflora (SaADF2) is Superior to its Rice homolog (OsADF2) in Conferring Drought and Salt Tolerance when Constitutively Overexpressed in Rice.	An ADF isolated from a monocot halophyte, Spartina alterniflora (SaADF2) imparted significantly higher level of drought and salinity tolerance when expressed in rice than its rice homologue OsADF2
OsADF2	Os03g0780400	LOC_Os03g56790	tolerance	An Actin Depolymerizing Factor from the Halophyte Smooth Cordgrass, Spartina alterniflora (SaADF2) is Superior to its Rice homolog (OsADF2) in Conferring Drought and Salt Tolerance when Constitutively Overexpressed in Rice.	An ADF isolated from a monocot halophyte, Spartina alterniflora (SaADF2) imparted significantly higher level of drought and salinity tolerance when expressed in rice than its rice homologue OsADF2
OsADF2	Os03g0780400	LOC_Os03g56790	yield	An Actin Depolymerizing Factor from the Halophyte Smooth Cordgrass, Spartina alterniflora (SaADF2) is Superior to its Rice homolog (OsADF2) in Conferring Drought and Salt Tolerance when Constitutively Overexpressed in Rice.	Rice transgenics constitutively overexpressing SaADF2 (SaADF2-OE) showed better growth, relative water content, and photosynthetic and agronomic yield under drought conditions than wild-type (WT) and OsADF2 overexpressers (OsADF2-OE)
OsADF2	Os03g0780400	LOC_Os03g56790	protein kinase	An Actin Depolymerizing Factor from the Halophyte Smooth Cordgrass, Spartina alterniflora (SaADF2) is Superior to its Rice homolog (OsADF2) in Conferring Drought and Salt Tolerance when Constitutively Overexpressed in Rice.	SaADF2 differs from OsADF2 by a few amino acid residues, including a substitution in the regulatory phosphorylation site serine-6, which accounted for its weak interaction with OsCDPK6 (calcium dependent protein kinase), thus resulting in an increased efficacy of SaADF2 and enhanced cellular actin dynamics
OsADF3	Os03g0820500	LOC_Os03g60580	drought	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Ectopically overexpressed OsADF3 conferred the mannitol- and drought-stress tolerance of transgenic Arabidopsis seedlings by increasing germination rate, primary root length and survival
OsADF3	Os03g0820500	LOC_Os03g60580	drought	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance
OsADF3	Os03g0820500	LOC_Os03g60580	seedling	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Ectopically overexpressed OsADF3 conferred the mannitol- and drought-stress tolerance of transgenic Arabidopsis seedlings by increasing germination rate, primary root length and survival
OsADF3	Os03g0820500	LOC_Os03g60580	ABA	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Under ABA or abiotic stress treatments, OsADF3::GUS activity was enhanced in lateral roots and root tips
OsADF3	Os03g0820500	LOC_Os03g60580	drought tolerance	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance
OsADF3	Os03g0820500	LOC_Os03g60580	root	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Under ABA or abiotic stress treatments, OsADF3::GUS activity was enhanced in lateral roots and root tips
OsADF3	Os03g0820500	LOC_Os03g60580	root	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Ectopically overexpressed OsADF3 conferred the mannitol- and drought-stress tolerance of transgenic Arabidopsis seedlings by increasing germination rate, primary root length and survival
OsADF3	Os03g0820500	LOC_Os03g60580	abiotic stress	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Under ABA or abiotic stress treatments, OsADF3::GUS activity was enhanced in lateral roots and root tips
OsADF3	Os03g0820500	LOC_Os03g60580	lateral root	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Under ABA or abiotic stress treatments, OsADF3::GUS activity was enhanced in lateral roots and root tips
OsADF3	Os03g0820500	LOC_Os03g60580	primary root	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Ectopically overexpressed OsADF3 conferred the mannitol- and drought-stress tolerance of transgenic Arabidopsis seedlings by increasing germination rate, primary root length and survival
OsADK1	None	LOC_Os01g65940	transcription factor	OsADK1, a novel kinase regulating arbuscular mycorrhizal symbiosis in rice.	 Transcriptome sequencing of both nursed and un-nursed Osadk1 mutants then revealed that the mutation of OsADK1 could greatly affect the AM symbiotic programme, including many key transcription factors such as RAM1 and WRI5
OsADK1	None	LOC_Os01g65940	development	OsADK1, a novel kinase regulating arbuscular mycorrhizal symbiosis in rice.	 In this study, we identified a novel kinase gene in rice named OsADK1 (Arbuscule Development Kinase 1) that is required for arbuscule development
OsADK1	None	LOC_Os01g65940	Kinase	OsADK1, a novel kinase regulating arbuscular mycorrhizal symbiosis in rice.	 In this study, we identified a novel kinase gene in rice named OsADK1 (Arbuscule Development Kinase 1) that is required for arbuscule development
OsADK1	None	LOC_Os01g65940	Kinase	OsADK1, a novel kinase regulating arbuscular mycorrhizal symbiosis in rice.	 OsADK1 therefore represents a new rice kinase that is required for arbuscule branching
OsADK1	None	LOC_Os01g65940	kinase	OsADK1, a novel kinase regulating arbuscular mycorrhizal symbiosis in rice.	 In this study, we identified a novel kinase gene in rice named OsADK1 (Arbuscule Development Kinase 1) that is required for arbuscule development
OsADK1	None	LOC_Os01g65940	kinase	OsADK1, a novel kinase regulating arbuscular mycorrhizal symbiosis in rice.	 OsADK1 therefore represents a new rice kinase that is required for arbuscule branching
OsADK1	None	LOC_Os01g65940	branching	OsADK1, a novel kinase regulating arbuscular mycorrhizal symbiosis in rice.	 OsADK1 therefore represents a new rice kinase that is required for arbuscule branching
OsADK1	None	LOC_Os01g65940	development	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.	 OsADK1 appeared to be required for mycorrhizal colonization and arbuscule development
OsADK1	None	LOC_Os01g65940	mycorrhizal symbiosis	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.
OsADK1	None	LOC_Os01g65940	phosphate	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.
OsADK1	None	LOC_Os01g65940	Pi	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.	 In addition, Hydroponic experiments suggested that OsADK1 may be involved in plant Pi starvation responses
OsADK1	None	LOC_Os01g65940	pi	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.	 In addition, Hydroponic experiments suggested that OsADK1 may be involved in plant Pi starvation responses
OsADK1	None	LOC_Os01g65940	 pi 	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.	 In addition, Hydroponic experiments suggested that OsADK1 may be involved in plant Pi starvation responses
OsADK1	None	LOC_Os01g65940	symbiosis	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.
OsADK1	None	LOC_Os01g65940	phosphate starvation	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.
OsADK1	None	LOC_Os01g65940	phosphate starvation response	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.	A PHR-regulated receptor-like kinase, OsADK1 is required for mycorrhizal symbiosis and phosphate starvation responses.
OsAFB2	Os04g0395600	LOC_Os04g32460	transporter	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsAFB2	Os04g0395600	LOC_Os04g32460	tiller	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsAFB2	Os04g0395600	LOC_Os04g32460	tiller	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice
OsAFB2	Os04g0395600	LOC_Os04g32460	iaa	Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa)	Moreover, yeast two-hybrid and bimolecular fluorescence complementation assays showed that OsTIR1 and OsAFB2 interact with OsIAA1
OsAFB2	Os04g0395600	LOC_Os04g32460	flower	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice
OsAFB2	Os04g0395600	LOC_Os04g32460	salt	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice
OsAFB2	Os04g0395600	LOC_Os04g32460	drought	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice
OsAFB2	Os04g0395600	LOC_Os04g32460	tillering	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsAFB2	Os04g0395600	LOC_Os04g32460	auxin	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	In this study, we verified that two rice auxin receptor gene homologs (OsTIR1 and OsAFB2) could be targeted by OsmiR393 (Os for Oryza sativa)
OsAFB2	Os04g0395600	LOC_Os04g32460	auxin	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	These data indicated that the phenotypes of OsmiR393-overexpressing rice may be caused through hyposensitivity to the auxin signal by reduced expression of two auxin receptor genes (OsTIR1 and OsAFB2)
OsAFB2	Os04g0395600	LOC_Os04g32460	auxin	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsAFB2	Os04g0395600	LOC_Os04g32460	auxin	Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa)	* This study functionally characterizes two members of the rice (Oryza sativa) miR393 family and their target genes, OsTIR1 and OsAFB2 (AUXIN SIGNALING F-BOX), the two closest homologs of Arabidopsis TRANSPORT INHIBITOR RESPONSE 1 (TIR1)
OsAFB4	Os02g0759700	LOC_Os02g52230	auxin	Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance	Notably, only the Osafb4 mutants were strongly resistant to herbicide picloram, suggesting that OsAFB4 is a unique auxin receptor in rice
OsAFB4	Os02g0759700	LOC_Os02g52230	resistant	Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance	Notably, only the Osafb4 mutants were strongly resistant to herbicide picloram, suggesting that OsAFB4 is a unique auxin receptor in rice
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	temperature	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	It would be a beneficial strategy to generate lines with varied expression levels of OsAFB6 to breed high-yielding cultivars for specific regions that can fully utilize the local sunlight and temperature resources
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	grain	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	grain	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	development	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	grain yield	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	grain yield	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	yield	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	yield	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	auxin	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	cytokinin	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	cytokinin	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	meristem	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	OsAFB6 is preferentially expressed in young tissues with stronger meristem activities and suppresses flowering by upregulating OsRR1 and downregulating Ehd1 expression levels
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	meristem	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	inflorescence	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	iaa	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	IAA	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAFB6|OsAFB5	Os03g0187500	LOC_Os03g08850	spikelets per panicle	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Overexpression of OsAFB6 delayed heading, increased cytokinin (CK) by suppressing the expression level of Gn1a and simultaneously decreased the IAA concentration in the young panicle, which promoted inflorescence meristem development and resulted in large panicles with more spikelets per panicle, primary branches and increased grain yield
OsAGAP	Os02g0198300	LOC_Os02g10480	primary root	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	Transgenic Arabidopsis with OsAGAP constitutively expression showed reduced apical dominance, shorter primary roots, increasing number of longer adventitious roots
OsAGAP	Os02g0198300	LOC_Os02g10480	root	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development	Here, we show that over-expression of OsAGAP, an ARF-GTPase-activating protein (ARF-GAP) in rice, impaired PAT and interfered with both primary and lateral root development
OsAGAP	Os02g0198300	LOC_Os02g10480	root	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development	Together, our data suggest that OsAGAP has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants
OsAGAP	Os02g0198300	LOC_Os02g10480	root	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development
OsAGAP	Os02g0198300	LOC_Os02g10480	seedling	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	Determination of whole-plant IAA level showed that there is a sharp increase of free IAA in OsAGAP transgenic Arabidopsis seedlings
OsAGAP	Os02g0198300	LOC_Os02g10480	root development	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	These results suggest OsAGAP, an ARF-GAP of rice, maybe involved in the mediation of plant root development by regulating auxin level
OsAGAP	Os02g0198300	LOC_Os02g10480	root development	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis
OsAGAP	Os02g0198300	LOC_Os02g10480	growth	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development	Together, our data suggest that OsAGAP has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants
OsAGAP	Os02g0198300	LOC_Os02g10480	auxin	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development	Together, our data suggest that OsAGAP has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants
OsAGAP	Os02g0198300	LOC_Os02g10480	auxin	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development
OsAGAP	Os02g0198300	LOC_Os02g10480	lateral root	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development	Here, we show that over-expression of OsAGAP, an ARF-GTPase-activating protein (ARF-GAP) in rice, impaired PAT and interfered with both primary and lateral root development
OsAGAP	Os02g0198300	LOC_Os02g10480	iaa	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	Determination of whole-plant IAA level showed that there is a sharp increase of free IAA in OsAGAP transgenic Arabidopsis seedlings
OsAGAP	Os02g0198300	LOC_Os02g10480	auxin	Adenosine diphosphate ribosylation factor-GTPase-activating protein stimulates the transport of AUX1 endosome, which relies on actin cytoskeletal organization in rice root development	Thus, we propose that AUX1 accumulation in the OsAGAP overexpression and actin disrupted cells may be due to the fact that endocytosis of the auxin influx carrier AUX1 early endosome was greatly promoted by actin cytoskeleton disruption
OsAGAP	Os02g0198300	LOC_Os02g10480	root development	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development	Here, we show that over-expression of OsAGAP, an ARF-GTPase-activating protein (ARF-GAP) in rice, impaired PAT and interfered with both primary and lateral root development
OsAGAP	Os02g0198300	LOC_Os02g10480	root development	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development
OsAGAP	Os02g0198300	LOC_Os02g10480	root	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	Transgenic Arabidopsis with OsAGAP constitutively expression showed reduced apical dominance, shorter primary roots, increasing number of longer adventitious roots
OsAGAP	Os02g0198300	LOC_Os02g10480	root	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	These results suggest OsAGAP, an ARF-GAP of rice, maybe involved in the mediation of plant root development by regulating auxin level
OsAGAP	Os02g0198300	LOC_Os02g10480	root	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis
OsAGAP	Os02g0198300	LOC_Os02g10480	adventitious root	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	Transgenic Arabidopsis with OsAGAP constitutively expression showed reduced apical dominance, shorter primary roots, increasing number of longer adventitious roots
OsAGAP	Os02g0198300	LOC_Os02g10480	auxin	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	These results suggest OsAGAP, an ARF-GAP of rice, maybe involved in the mediation of plant root development by regulating auxin level
OsAGAP	Os02g0198300	LOC_Os02g10480	auxin	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis
OsAGAP	Os02g0198300	LOC_Os02g10480	grain	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsAGAP	Os02g0198300	LOC_Os02g10480	grain yield	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsAGAP	Os02g0198300	LOC_Os02g10480	yield	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsAGAP	Os02g0198300	LOC_Os02g10480	architecture	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsAGAP	Os02g0198300	LOC_Os02g10480	plant architecture	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsAGO17	Os02g0169400	LOC_Os02g07310	grain	A putative AGO protein, OsAGO17, positively regulates grain size and grain weight through OsmiR397b in rice.	In conclusion, OsAGO17 might be a critical protein in the sRNA pathway and positively regulates grain size and weight in rice
OsAGO17	Os02g0169400	LOC_Os02g07310	development	A putative AGO protein, OsAGO17, positively regulates grain size and grain weight through OsmiR397b in rice.	Combined with the results of immunoprecipitation (IP) analysis, we suggested that OsAGO17 formed an RISC with OsmiR397b and affected rice development by suppression of LAC expression
OsAGO17	Os02g0169400	LOC_Os02g07310	grain size	A putative AGO protein, OsAGO17, positively regulates grain size and grain weight through OsmiR397b in rice.	In conclusion, OsAGO17 might be a critical protein in the sRNA pathway and positively regulates grain size and weight in rice
OsAGO17	Os02g0169400	LOC_Os02g07310	development	Rice-specific Argonaute 17 controls reproductive growth and yield-associated phenotypes	Our results indicate a distinctive role for OsAGO17 in rice reproductive development that could be harnessed to improve yield
OsAGO17	Os02g0169400	LOC_Os02g07310	yield	Rice-specific Argonaute 17 controls reproductive growth and yield-associated phenotypes	Our results indicate a distinctive role for OsAGO17 in rice reproductive development that could be harnessed to improve yield
OsAGO17	Os02g0169400	LOC_Os02g07310	reproductive	Rice-specific Argonaute 17 controls reproductive growth and yield-associated phenotypes	Our results indicate a distinctive role for OsAGO17 in rice reproductive development that could be harnessed to improve yield
OsAGO17	Os02g0169400	LOC_Os02g07310	reproductive development	Rice-specific Argonaute 17 controls reproductive growth and yield-associated phenotypes	Our results indicate a distinctive role for OsAGO17 in rice reproductive development that could be harnessed to improve yield
OsAGO1a	Os02g0672200	LOC_Os02g45070	antiviral immunity	Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA	A role for AGO1 in rice antiviral immunity under natural infection conditions
OsAGO1b	Os04g0566500	LOC_Os04g47870	antiviral immunity	Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA	A role for AGO1 in rice antiviral immunity under natural infection conditions
OsAGO1b	Os04g0566500	LOC_Os04g47870	leaf	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.
OsAGO1b	Os04g0566500	LOC_Os04g47870	vascular bundle	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	The mRNA distribution patterns of OSHB3 and OsARF4 in leaves remained almost unchanged between ZH11 and OsAGO1b overexpression lines, but their expression levels were enhanced at the regions of vascular bundles and sclerenchymatous cell differentiation
OsAGO1b	Os04g0566500	LOC_Os04g47870	growth	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	However, only up- and down-regulation of OsAGO1b caused multiple abnormal phenotypic changes in rice, indicating that OsAGO1b is the key player in rice growth and organ development compared with other three OsAGO1s
OsAGO1b	Os04g0566500	LOC_Os04g47870	growth	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	In summary, we demonstrated OsAGO1b is the leading player among four OsAGO1s in rice growth and development
OsAGO1b	Os04g0566500	LOC_Os04g47870	pollen	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Knockdown lines of OsAGO1b showed almost normal leaves, but the seed setting percentage was significantly reduced accompanied by the disturbed anther patterning and reduced pollen fertility
OsAGO1b	Os04g0566500	LOC_Os04g47870	tiller	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Overexpression of OsAGO1b caused adaxially rolled leaves and a series of abnormal phenotypes, such as the reduced tiller number and plant height
OsAGO1b	Os04g0566500	LOC_Os04g47870	anther	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Knockdown lines of OsAGO1b showed almost normal leaves, but the seed setting percentage was significantly reduced accompanied by the disturbed anther patterning and reduced pollen fertility
OsAGO1b	Os04g0566500	LOC_Os04g47870	development	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.
OsAGO1b	Os04g0566500	LOC_Os04g47870	development	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	However, only up- and down-regulation of OsAGO1b caused multiple abnormal phenotypic changes in rice, indicating that OsAGO1b is the key player in rice growth and organ development compared with other three OsAGO1s
OsAGO1b	Os04g0566500	LOC_Os04g47870	development	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Further anatomical observation revealed that OsAGO1b overexpression plants showed the partially defective development of sclerenchymatous cells on the abaxial side of leaves
OsAGO1b	Os04g0566500	LOC_Os04g47870	development	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	In situ hybridization showed OsAGO1b mRNA was uniformly accumulated in P1 to P3 primordia without polarity property, suggesting OsAGO1b did not regulate the adaxial-abaxial polarity development directly
OsAGO1b	Os04g0566500	LOC_Os04g47870	development	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	In summary, we demonstrated OsAGO1b is the leading player among four OsAGO1s in rice growth and development
OsAGO1b	Os04g0566500	LOC_Os04g47870	seed	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Knockdown lines of OsAGO1b showed almost normal leaves, but the seed setting percentage was significantly reduced accompanied by the disturbed anther patterning and reduced pollen fertility
OsAGO1b	Os04g0566500	LOC_Os04g47870	cytoplasm	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	OsAGO1b is a typical AGO protein, and co-localized in both the nucleus and cytoplasm simultaneously
OsAGO1b	Os04g0566500	LOC_Os04g47870	nucleus	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	OsAGO1b is a typical AGO protein, and co-localized in both the nucleus and cytoplasm simultaneously
OsAGO1b	Os04g0566500	LOC_Os04g47870	height	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Overexpression of OsAGO1b caused adaxially rolled leaves and a series of abnormal phenotypes, such as the reduced tiller number and plant height
OsAGO1b	Os04g0566500	LOC_Os04g47870	plant height	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Overexpression of OsAGO1b caused adaxially rolled leaves and a series of abnormal phenotypes, such as the reduced tiller number and plant height
OsAGO1b	Os04g0566500	LOC_Os04g47870	fertility	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Knockdown lines of OsAGO1b showed almost normal leaves, but the seed setting percentage was significantly reduced accompanied by the disturbed anther patterning and reduced pollen fertility
OsAGO1b	Os04g0566500	LOC_Os04g47870	tiller number	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Overexpression of OsAGO1b caused adaxially rolled leaves and a series of abnormal phenotypes, such as the reduced tiller number and plant height
OsAGO1d	Os06g0729300	LOC_Os06g51310	temperature	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Together, our results show that OsAGO1d acts as a mobile signal to fine-tune phasiRNA production and this function is important for male fertility at low temperature
OsAGO1d	Os06g0729300	LOC_Os06g51310	development	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Loss of OsAGO1d function causes low-temperature male sterility associated with delayed programmed cell death of tapetal cells during anther development
OsAGO1d	Os06g0729300	LOC_Os06g51310	fertility	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Together, our results show that OsAGO1d acts as a mobile signal to fine-tune phasiRNA production and this function is important for male fertility at low temperature
OsAGO1d	Os06g0729300	LOC_Os06g51310	anther	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Loss of OsAGO1d function causes low-temperature male sterility associated with delayed programmed cell death of tapetal cells during anther development
OsAGO1d	Os06g0729300	LOC_Os06g51310	anther	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 OsAGO1d protein moves from anther wall cells into meiocytes, where it loads miR2275 to produce 24-nt phasiRNAs
OsAGO1d	Os06g0729300	LOC_Os06g51310	sterility	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Loss of OsAGO1d function causes low-temperature male sterility associated with delayed programmed cell death of tapetal cells during anther development
OsAGO1d	Os06g0729300	LOC_Os06g51310	cell death	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Loss of OsAGO1d function causes low-temperature male sterility associated with delayed programmed cell death of tapetal cells during anther development
OsAGO1d	Os06g0729300	LOC_Os06g51310	anther development	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Loss of OsAGO1d function causes low-temperature male sterility associated with delayed programmed cell death of tapetal cells during anther development
OsAGO1d	Os06g0729300	LOC_Os06g51310	tapetal	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Loss of OsAGO1d function causes low-temperature male sterility associated with delayed programmed cell death of tapetal cells during anther development
OsAGO1d	Os06g0729300	LOC_Os06g51310	male sterility	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Loss of OsAGO1d function causes low-temperature male sterility associated with delayed programmed cell death of tapetal cells during anther development
OsAGO1d	Os06g0729300	LOC_Os06g51310	low-temperature	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Loss of OsAGO1d function causes low-temperature male sterility associated with delayed programmed cell death of tapetal cells during anther development
OsAGO1d	Os06g0729300	LOC_Os06g51310	male fertility	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Together, our results show that OsAGO1d acts as a mobile signal to fine-tune phasiRNA production and this function is important for male fertility at low temperature
OsAGO1d	Os06g0729300	LOC_Os06g51310	programmed cell death	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	 Loss of OsAGO1d function causes low-temperature male sterility associated with delayed programmed cell death of tapetal cells during anther development
OsAGO2	Os04g0615700	LOC_Os04g52540	pollen	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Knockdown of OsAGO2 led to the overaccumulation of reactive oxygen species (ROS) and abnormal anther development, causing premature initiation of tapetal programmed cell death (PCD) and pollen abortion
OsAGO2	Os04g0615700	LOC_Os04g52540	pollen	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Moreover, knockdown of OsHXK1 restored pollen fertility in OsAGO2 knockdown plants
OsAGO2	Os04g0615700	LOC_Os04g52540	anther	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Here, we show that the AGO protein OsAGO2 regulates anther development in rice
OsAGO2	Os04g0615700	LOC_Os04g52540	anther	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Knockdown of OsAGO2 led to the overaccumulation of reactive oxygen species (ROS) and abnormal anther development, causing premature initiation of tapetal programmed cell death (PCD) and pollen abortion
OsAGO2	Os04g0615700	LOC_Os04g52540	development	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Here, we show that the AGO protein OsAGO2 regulates anther development in rice
OsAGO2	Os04g0615700	LOC_Os04g52540	cell death	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Knockdown of OsAGO2 led to the overaccumulation of reactive oxygen species (ROS) and abnormal anther development, causing premature initiation of tapetal programmed cell death (PCD) and pollen abortion
OsAGO2	Os04g0615700	LOC_Os04g52540	fertility	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Moreover, knockdown of OsHXK1 restored pollen fertility in OsAGO2 knockdown plants
OsAGO2	Os04g0615700	LOC_Os04g52540	tapetal	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.
OsAGO2	Os04g0615700	LOC_Os04g52540	tapetal	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Knockdown of OsAGO2 led to the overaccumulation of reactive oxygen species (ROS) and abnormal anther development, causing premature initiation of tapetal programmed cell death (PCD) and pollen abortion
OsAGO2	Os04g0615700	LOC_Os04g52540	tapetal	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 These results indicate that OsHXK1 controls the appropriate production of ROS and the proper timing of tapetal PCD and is directly regulated by OsAGO2 through epigenetic regulation
OsAGO2	Os04g0615700	LOC_Os04g52540	anther development	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Here, we show that the AGO protein OsAGO2 regulates anther development in rice
OsAGO2	Os04g0615700	LOC_Os04g52540	anther development	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Knockdown of OsAGO2 led to the overaccumulation of reactive oxygen species (ROS) and abnormal anther development, causing premature initiation of tapetal programmed cell death (PCD) and pollen abortion
OsAGO2	Os04g0615700	LOC_Os04g52540	PCD	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.
OsAGO2	Os04g0615700	LOC_Os04g52540	PCD	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 These results indicate that OsHXK1 controls the appropriate production of ROS and the proper timing of tapetal PCD and is directly regulated by OsAGO2 through epigenetic regulation
OsAGO2	Os04g0615700	LOC_Os04g52540	reactive oxygen species	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Knockdown of OsAGO2 led to the overaccumulation of reactive oxygen species (ROS) and abnormal anther development, causing premature initiation of tapetal programmed cell death (PCD) and pollen abortion
OsAGO2	Os04g0615700	LOC_Os04g52540	tapetal programmed cell death	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Knockdown of OsAGO2 led to the overaccumulation of reactive oxygen species (ROS) and abnormal anther development, causing premature initiation of tapetal programmed cell death (PCD) and pollen abortion
OsAGO2	Os04g0615700	LOC_Os04g52540	disease	An OsPRMT5-OsAGO2/miR1875-OsHXK1 module regulates rice immunity to blast disease.	 Our results indicate that OsAGO2 is a key immune player that manipulates rice defense responses against blast disease
OsAGO2	Os04g0615700	LOC_Os04g52540	defense response	An OsPRMT5-OsAGO2/miR1875-OsHXK1 module regulates rice immunity to blast disease.	 Our results indicate that OsAGO2 is a key immune player that manipulates rice defense responses against blast disease
OsAGO2	Os04g0615700	LOC_Os04g52540	defense	An OsPRMT5-OsAGO2/miR1875-OsHXK1 module regulates rice immunity to blast disease.	 Our results indicate that OsAGO2 is a key immune player that manipulates rice defense responses against blast disease
OsAGO2	Os04g0615700	LOC_Os04g52540	blast	An OsPRMT5-OsAGO2/miR1875-OsHXK1 module regulates rice immunity to blast disease.	 Our results indicate that OsAGO2 is a key immune player that manipulates rice defense responses against blast disease
OsAGO2	Os04g0615700	LOC_Os04g52540	blast disease	An OsPRMT5-OsAGO2/miR1875-OsHXK1 module regulates rice immunity to blast disease.	 Our results indicate that OsAGO2 is a key immune player that manipulates rice defense responses against blast disease
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	shoot	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice	The shoot organization2 (sho2) mutant, a weak allele of SHOOTLESS4 that is a ZIPPY/ARGONAUTE7 homolog in rice, shows a variety of leaf abnormalities; filamentous leaves, bi- or trifurcated leaves, separation of the filamentous structure from the leaf blade or deletion of the margin
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	shoot	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice	The expression pattern of SHO2 in the outer layer of the shoot apical meristem and the adaxial surface of the leaf, as well as the altered expression of HD-ZIP III and ETTIN homologs in the central domain of sho2 leaves, suggest that normal development of the central domain is a prerequisite for the synchronous growth of the three domains
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	shoot apical meristem	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice	The expression pattern of SHO2 in the outer layer of the shoot apical meristem and the adaxial surface of the leaf, as well as the altered expression of HD-ZIP III and ETTIN homologs in the central domain of sho2 leaves, suggest that normal development of the central domain is a prerequisite for the synchronous growth of the three domains
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	shoot	Shoot organization genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice	The mechanism regulating the pattern of leaf initiation was analyzed by using shoot organization (sho) mutants derived from three loci (SHO1, SHO2, and SHO3)
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	leaf development	The small interfering RNA production pathway is required for shoot meristem initiation in rice	Rice SHL2, SHL4/SHO2, and SHO1 encoded orthologues of Arabidopsis RNA-dependent RNA polymerase 6, ARGONAUTE (AGO) 7, and DICER-like 4, respectively, whose mutations affect leaf development through the trans-acting siRNA (ta-siRNA) pathway
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	leaf	The small interfering RNA production pathway is required for shoot meristem initiation in rice	Rice SHL2, SHL4/SHO2, and SHO1 encoded orthologues of Arabidopsis RNA-dependent RNA polymerase 6, ARGONAUTE (AGO) 7, and DICER-like 4, respectively, whose mutations affect leaf development through the trans-acting siRNA (ta-siRNA) pathway
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	leaf	The small interfering RNA production pathway is required for shoot meristem initiation in rice	The gain-of-function experiment by the ectopic expression of SHL4 resulted in reduced accumulation of an microRNA, miR166, and partial adaxialization of leaves, supporting a role for the ta-siRNA pathway in the maintenance of leaf polarity as previously reported in maize
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	growth	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice	The leaf founder cells for the lateral and marginal domains are recruited normally in sho2, indicating that sho2 is defective in the growth of leaf domains after the founder cells are recruited
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	growth	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice	The expression pattern of SHO2 in the outer layer of the shoot apical meristem and the adaxial surface of the leaf, as well as the altered expression of HD-ZIP III and ETTIN homologs in the central domain of sho2 leaves, suggest that normal development of the central domain is a prerequisite for the synchronous growth of the three domains
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	shoot	The small interfering RNA production pathway is required for shoot meristem initiation in rice	Mutations in rice SHOOTLESS2 (SHL2), SHL4/SHOOT ORGANIZATION2 (SHO2), and SHO1 cause complete deletion or abnormal formation of the SAM
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	leaf	Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit	According to high-sequence conservation, the rolled-leaf gene in rice could be orthologous to the Arabidopsis ZIP/Ago7 gene, so we called it OsAGO7
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	leaf	Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit	Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	meristem	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice	The expression pattern of SHO2 in the outer layer of the shoot apical meristem and the adaxial surface of the leaf, as well as the altered expression of HD-ZIP III and ETTIN homologs in the central domain of sho2 leaves, suggest that normal development of the central domain is a prerequisite for the synchronous growth of the three domains
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	leaf	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice	The shoot organization2 (sho2) mutant, a weak allele of SHOOTLESS4 that is a ZIPPY/ARGONAUTE7 homolog in rice, shows a variety of leaf abnormalities; filamentous leaves, bi- or trifurcated leaves, separation of the filamentous structure from the leaf blade or deletion of the margin
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	leaf	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice	The leaf founder cells for the lateral and marginal domains are recruited normally in sho2, indicating that sho2 is defective in the growth of leaf domains after the founder cells are recruited
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	leaf	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice	The expression pattern of SHO2 in the outer layer of the shoot apical meristem and the adaxial surface of the leaf, as well as the altered expression of HD-ZIP III and ETTIN homologs in the central domain of sho2 leaves, suggest that normal development of the central domain is a prerequisite for the synchronous growth of the three domains
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	erect	Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit	Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	leaf	Shoot organization genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice	The mechanism regulating the pattern of leaf initiation was analyzed by using shoot organization (sho) mutants derived from three loci (SHO1, SHO2, and SHO3)
OsAGO7|shl4|SHO2	Os03g0449200	LOC_Os03g33650	female sterility	A spontaneous thermo-sensitive female sterility mutation in rice enables fully mechanized hybrid breeding	A miR390 mutant also exhibits female sterility, suggesting that female fertility is controlled by the miR390-AGO7 module.
OsAGSW1	Os05g0323800	LOC_Os05g25840	vascular bundle	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Analysis of OsAGSW1 promoter::β-glucuronidase transgenic rice indicated that this gene was highly expressed in vascular bundles in shoot, hull and caryopsis
OsAGSW1	Os05g0323800	LOC_Os05g25840	vascular bundle	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Thus, our results demonstrated that OsAGSW1 plays an important role in seed shape and size of rice by regulating the number of external parenchyma cells and the development of vascular bundles, providing a new insight into the functions of ABC1 genes in plants
OsAGSW1	Os05g0323800	LOC_Os05g25840	spikelet	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Microscopy analysis showed that spikelet hulls just before heading were different in the OsAGSW1-overexpressed plants compared with wild-type and OsAGSW1 RNAi rice
OsAGSW1	Os05g0323800	LOC_Os05g25840	grain	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Here, we report on an ABC1 protein kinase gene, OsAGSW1 (ABC1-like kinase related to Grain size and Weight)
OsAGSW1	Os05g0323800	LOC_Os05g25840	grain	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Stable transgenic lines overexpressing OsAGSW1 exhibited a phenotype with a significant increase in grain size, grain weight, grain filling rate and 1000-grain weight compared with the wild-type and RNAi transgenic plants
OsAGSW1	Os05g0323800	LOC_Os05g25840	seed	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Thus, our results demonstrated that OsAGSW1 plays an important role in seed shape and size of rice by regulating the number of external parenchyma cells and the development of vascular bundles, providing a new insight into the functions of ABC1 genes in plants
OsAGSW1	Os05g0323800	LOC_Os05g25840	development	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Thus, our results demonstrated that OsAGSW1 plays an important role in seed shape and size of rice by regulating the number of external parenchyma cells and the development of vascular bundles, providing a new insight into the functions of ABC1 genes in plants
OsAGSW1	Os05g0323800	LOC_Os05g25840	grain size	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Here, we report on an ABC1 protein kinase gene, OsAGSW1 (ABC1-like kinase related to Grain size and Weight)
OsAGSW1	Os05g0323800	LOC_Os05g25840	grain size	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Stable transgenic lines overexpressing OsAGSW1 exhibited a phenotype with a significant increase in grain size, grain weight, grain filling rate and 1000-grain weight compared with the wild-type and RNAi transgenic plants
OsAGSW1	Os05g0323800	LOC_Os05g25840	grain filling	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Stable transgenic lines overexpressing OsAGSW1 exhibited a phenotype with a significant increase in grain size, grain weight, grain filling rate and 1000-grain weight compared with the wild-type and RNAi transgenic plants
OsAGSW1	Os05g0323800	LOC_Os05g25840	grain weight	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Stable transgenic lines overexpressing OsAGSW1 exhibited a phenotype with a significant increase in grain size, grain weight, grain filling rate and 1000-grain weight compared with the wild-type and RNAi transgenic plants
OsAGSW1	Os05g0323800	LOC_Os05g25840	Kinase	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	Here, we report on an ABC1 protein kinase gene, OsAGSW1 (ABC1-like kinase related to Grain size and Weight)
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	mitosis	Identification of a novel plant MAR DNA binding protein localized on chromosomal surfaces	In addition, AHL1 is located on the surface of chromosomes during mitosis
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	root	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Functional studies revealed that OsAHL1 regulates root development under drought condition to enhance drought avoidance, participates in oxidative stress response and also regulates the content of chlorophyll in rice leaves
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	resistance	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	The results indicated OsAHL1 has both drought avoidance and drought tolerance that could greatly improve drought resistance of the rice plant
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	panicle	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Overexpression of OsAHL1 enhanced multiple stress tolerances in rice plants during both seedling and panicle development stages
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	seedling	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Overexpression of OsAHL1 enhanced multiple stress tolerances in rice plants during both seedling and panicle development stages
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	development	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Overexpression of OsAHL1 enhanced multiple stress tolerances in rice plants during both seedling and panicle development stages
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	development	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Functional studies revealed that OsAHL1 regulates root development under drought condition to enhance drought avoidance, participates in oxidative stress response and also regulates the content of chlorophyll in rice leaves
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	oxidative stress	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Functional studies revealed that OsAHL1 regulates root development under drought condition to enhance drought avoidance, participates in oxidative stress response and also regulates the content of chlorophyll in rice leaves
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	drought	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	drought	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	The results indicated OsAHL1 has both drought avoidance and drought tolerance that could greatly improve drought resistance of the rice plant
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	drought	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Functional studies revealed that OsAHL1 regulates root development under drought condition to enhance drought avoidance, participates in oxidative stress response and also regulates the content of chlorophyll in rice leaves
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	tolerance	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	tolerance	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	The results indicated OsAHL1 has both drought avoidance and drought tolerance that could greatly improve drought resistance of the rice plant
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	oxidative	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Functional studies revealed that OsAHL1 regulates root development under drought condition to enhance drought avoidance, participates in oxidative stress response and also regulates the content of chlorophyll in rice leaves
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	drought tolerance	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	drought tolerance	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	The results indicated OsAHL1 has both drought avoidance and drought tolerance that could greatly improve drought resistance of the rice plant
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	root development	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Functional studies revealed that OsAHL1 regulates root development under drought condition to enhance drought avoidance, participates in oxidative stress response and also regulates the content of chlorophyll in rice leaves
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	stress	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Overexpression of OsAHL1 enhanced multiple stress tolerances in rice plants during both seedling and panicle development stages
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	stress	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Functional studies revealed that OsAHL1 regulates root development under drought condition to enhance drought avoidance, participates in oxidative stress response and also regulates the content of chlorophyll in rice leaves
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	stress	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	OsAHL1 specifically binds to the A/T rich sequence region of promoters or introns, and hence directly regulates the expression of many stress related downstream genes
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	drought resistance	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	The results indicated OsAHL1 has both drought avoidance and drought tolerance that could greatly improve drought resistance of the rice plant
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	stress tolerance	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Overexpression of OsAHL1 enhanced multiple stress tolerances in rice plants during both seedling and panicle development stages
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	stress response	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Functional studies revealed that OsAHL1 regulates root development under drought condition to enhance drought avoidance, participates in oxidative stress response and also regulates the content of chlorophyll in rice leaves
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	immunity	MoIug4 is a novel secreted effector promoting rice blast by counteracting host OsAHL1-regulated ethylene gene transcription.	 Our knockout and overexpression studies showed that OsAHL1 positively regulates plant immunity in response to M
OsAHL1|AHL1	Os08g0118000	LOC_Os08g02490	transcriptional regulator	MoIug4 is a novel secreted effector promoting rice blast by counteracting host OsAHL1-regulated ethylene gene transcription.	 OsAHL1 exhibits transcriptional regulatory activities by binding the OsEIN2 promoter region, similar to MoIug4
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	abiotic stress	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	OsBAT1 transcript levels are enhanced in rice seedlings in response to abiotic stress including salt stress and abscisic acid
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	abiotic stress	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	This study demonstrates several unique characteristics of OsBAT1 especially its ability to unwind both DNA and RNA duplexes; bipolar translocation and its transcript upregulation under abiotic stresses indicate that it is a multifunctional protein
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	abiotic stress	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	Overall, this study represents significant contribution in advancing our knowledge regarding functions of OsBAT1 in RNA and DNA metabolism and its putative role in abiotic stress signaling in plants
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	salt	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	OsBAT1 transcript levels are enhanced in rice seedlings in response to abiotic stress including salt stress and abscisic acid
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	salt stress	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	OsBAT1 transcript levels are enhanced in rice seedlings in response to abiotic stress including salt stress and abscisic acid
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	stress	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	OsBAT1 transcript levels are enhanced in rice seedlings in response to abiotic stress including salt stress and abscisic acid
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	stress	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	Overall, this study represents significant contribution in advancing our knowledge regarding functions of OsBAT1 in RNA and DNA metabolism and its putative role in abiotic stress signaling in plants
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	abscisic acid	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	OsBAT1 transcript levels are enhanced in rice seedlings in response to abiotic stress including salt stress and abscisic acid
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	biotic stress	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	OsBAT1 transcript levels are enhanced in rice seedlings in response to abiotic stress including salt stress and abscisic acid
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	biotic stress	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	This study demonstrates several unique characteristics of OsBAT1 especially its ability to unwind both DNA and RNA duplexes; bipolar translocation and its transcript upregulation under abiotic stresses indicate that it is a multifunctional protein
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	biotic stress	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	Overall, this study represents significant contribution in advancing our knowledge regarding functions of OsBAT1 in RNA and DNA metabolism and its putative role in abiotic stress signaling in plants
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	seedlings	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	OsBAT1 transcript levels are enhanced in rice seedlings in response to abiotic stress including salt stress and abscisic acid
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	helicase	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	Interestingly OsBAT1 also exhibits unique DNA helicase activity, which has not been reported so far in any BAT1 homologue
OsAIP1|OsBAT1	Os01g0549700	LOC_Os01g36890	helicase	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	The K m value for OsBAT1 DNA helicase is 0
OsAIR1	Os05g0497600	LOC_Os05g41795	seedlings	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression	Differences in the proportion of seedlings with expanded cotyledons and root lengths, and the lack of differences in germination rates between OsAIR1-overexpressing lines and control plants under AsV stress, suggest that OsAIR1 may positively regulate post-germination plant growth under stress conditions
OsAIR1	Os05g0497600	LOC_Os05g41795	root	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression	Differences in the proportion of seedlings with expanded cotyledons and root lengths, and the lack of differences in germination rates between OsAIR1-overexpressing lines and control plants under AsV stress, suggest that OsAIR1 may positively regulate post-germination plant growth under stress conditions
OsAIR1	Os05g0497600	LOC_Os05g41795	growth	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression	Differences in the proportion of seedlings with expanded cotyledons and root lengths, and the lack of differences in germination rates between OsAIR1-overexpressing lines and control plants under AsV stress, suggest that OsAIR1 may positively regulate post-germination plant growth under stress conditions
OsAIR1	Os05g0497600	LOC_Os05g41795	abiotic stress	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression	OsAIR1 expression was induced under abiotic stress conditions, including drought, salt, heat, and As exposure
OsAIR1	Os05g0497600	LOC_Os05g41795	stress	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression	OsAIR1 expression was induced under abiotic stress conditions, including drought, salt, heat, and As exposure
OsAIR1	Os05g0497600	LOC_Os05g41795	stress	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression	Differences in the proportion of seedlings with expanded cotyledons and root lengths, and the lack of differences in germination rates between OsAIR1-overexpressing lines and control plants under AsV stress, suggest that OsAIR1 may positively regulate post-germination plant growth under stress conditions
OsAIR1	Os05g0497600	LOC_Os05g41795	biotic stress	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression	OsAIR1 expression was induced under abiotic stress conditions, including drought, salt, heat, and As exposure
OsAIR1	Os05g0497600	LOC_Os05g41795	plant growth	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression	Differences in the proportion of seedlings with expanded cotyledons and root lengths, and the lack of differences in germination rates between OsAIR1-overexpressing lines and control plants under AsV stress, suggest that OsAIR1 may positively regulate post-germination plant growth under stress conditions
OsAIR1	Os05g0497600	LOC_Os05g41795	root length	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression	Differences in the proportion of seedlings with expanded cotyledons and root lengths, and the lack of differences in germination rates between OsAIR1-overexpressing lines and control plants under AsV stress, suggest that OsAIR1 may positively regulate post-germination plant growth under stress conditions
OsAIR2	Os11g0572500	LOC_Os11g36430	root	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Heterogeneous overexpression of OsAIR2 in Arabidopsis improved the seed germination and increased the root length under arsenate stress conditions
OsAIR2	Os11g0572500	LOC_Os11g36430	seed	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Heterogeneous overexpression of OsAIR2 in Arabidopsis improved the seed germination and increased the root length under arsenate stress conditions
OsAIR2	Os11g0572500	LOC_Os11g36430	seed germination	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Heterogeneous overexpression of OsAIR2 in Arabidopsis improved the seed germination and increased the root length under arsenate stress conditions
OsAIR2	Os11g0572500	LOC_Os11g36430	tolerance	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Therefore, these results suggest that OsAIR2 may be associated with the plant response to As stress and acts as a positive regulator of arsenic stress tolerance
OsAIR2	Os11g0572500	LOC_Os11g36430	abiotic stress	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Expression of OsAIR2 was induced under various abiotic stress conditions, including heat, salt, drought, and As exposure
OsAIR2	Os11g0572500	LOC_Os11g36430	stress	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Expression of OsAIR2 was induced under various abiotic stress conditions, including heat, salt, drought, and As exposure
OsAIR2	Os11g0572500	LOC_Os11g36430	stress	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Heterogeneous overexpression of OsAIR2 in Arabidopsis improved the seed germination and increased the root length under arsenate stress conditions
OsAIR2	Os11g0572500	LOC_Os11g36430	stress	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Therefore, these results suggest that OsAIR2 may be associated with the plant response to As stress and acts as a positive regulator of arsenic stress tolerance
OsAIR2	Os11g0572500	LOC_Os11g36430	biotic stress	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Expression of OsAIR2 was induced under various abiotic stress conditions, including heat, salt, drought, and As exposure
OsAIR2	Os11g0572500	LOC_Os11g36430	stress tolerance	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Therefore, these results suggest that OsAIR2 may be associated with the plant response to As stress and acts as a positive regulator of arsenic stress tolerance
OsAIR2	Os11g0572500	LOC_Os11g36430	root length	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Heterogeneous overexpression of OsAIR2 in Arabidopsis improved the seed germination and increased the root length under arsenate stress conditions
OsAK1	Os08g0109300	LOC_Os08g01770	chloroplast	An Epiallele of Rice AK1 Affects Photosynthetic Capacity.	OsAK1 localizes to chloroplast and many genes associated with photosynthesis processes were down-regulated inEpi-ak1
OsAK1	Os08g0109300	LOC_Os08g01770	photosynthesis	An Epiallele of Rice AK1 Affects Photosynthetic Capacity.	OsAK1 localizes to chloroplast and many genes associated with photosynthesis processes were down-regulated inEpi-ak1
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	leaf	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	The expression level of Osh69 is not only up-regulated during natural leaf senescence but also induced rapidly by darkness, hormones (methyl jasmonic acid, salicylic acid), and stresses (H2O2 and wounding)
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	leaf	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	These findings strongly suggest an important role for Osh69 in the degradation of chloroplast galactolipids during leaf senescence
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	chloroplast	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	These findings strongly suggest an important role for Osh69 in the degradation of chloroplast galactolipids during leaf senescence
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	salicylic acid	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	The expression level of Osh69 is not only up-regulated during natural leaf senescence but also induced rapidly by darkness, hormones (methyl jasmonic acid, salicylic acid), and stresses (H2O2 and wounding)
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	jasmonic	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	The expression level of Osh69 is not only up-regulated during natural leaf senescence but also induced rapidly by darkness, hormones (methyl jasmonic acid, salicylic acid), and stresses (H2O2 and wounding)
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	jasmonic acid	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	The expression level of Osh69 is not only up-regulated during natural leaf senescence but also induced rapidly by darkness, hormones (methyl jasmonic acid, salicylic acid), and stresses (H2O2 and wounding)
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	senescence	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	The expression level of Osh69 is not only up-regulated during natural leaf senescence but also induced rapidly by darkness, hormones (methyl jasmonic acid, salicylic acid), and stresses (H2O2 and wounding)
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	senescence	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	These findings strongly suggest an important role for Osh69 in the degradation of chloroplast galactolipids during leaf senescence
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	leaf senescence	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	The expression level of Osh69 is not only up-regulated during natural leaf senescence but also induced rapidly by darkness, hormones (methyl jasmonic acid, salicylic acid), and stresses (H2O2 and wounding)
OsAkaGal|Osh69	Os08g0495800	LOC_Os08g38710	leaf senescence	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	These findings strongly suggest an important role for Osh69 in the degradation of chloroplast galactolipids during leaf senescence
OsAKR1|OsI_04426	Os01g0847600	LOC_Os01g62860	oxidative	Overproduction of a rice aldo-keto reductase increases oxidative and heat stress tolerance by malondialdehyde and methylglyoxal detoxification	Heterologous synthesis of the OsAKR1 enzyme in transgenic tobacco plants resulted in increased tolerance against oxidative stress generated by methylviologen (MV) and improved resistance to high temperature
OsAKR1|OsI_04426	Os01g0847600	LOC_Os01g62860	temperature	Overproduction of a rice aldo-keto reductase increases oxidative and heat stress tolerance by malondialdehyde and methylglyoxal detoxification	Heterologous synthesis of the OsAKR1 enzyme in transgenic tobacco plants resulted in increased tolerance against oxidative stress generated by methylviologen (MV) and improved resistance to high temperature
OsAKR1|OsI_04426	Os01g0847600	LOC_Os01g62860	phosphate	Overproduction of a rice aldo-keto reductase increases oxidative and heat stress tolerance by malondialdehyde and methylglyoxal detoxification	The OsAKR1 recombinant protein exhibited a high nicotinamide adenine dinucleotide phosphate-dependent catalytic activity to reduce toxic aldehydes including glycolysis-derived methylglyoxal (MG) and lipid peroxidation-originated malondialdehyde (MDA)
OsAKR1|OsI_04426	Os01g0847600	LOC_Os01g62860	abiotic stress	Overproduction of a rice aldo-keto reductase increases oxidative and heat stress tolerance by malondialdehyde and methylglyoxal detoxification	These results support the positive role of OsAKR1 in abiotic stress-related reactive aldehyde detoxification pathways and its use for improvement of stress tolerance in plants
OsAKT1	Os01g0648000	LOC_Os01g45990	potassium	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	To unravel the mechanisms of K+ uptake and its sensitivity to salt stress in the model plant rice, we isolated and functionally characterized OsAKT1, a potassium channel homologous to the Arabidopsis root inward rectifier AKT1
OsAKT1	Os01g0648000	LOC_Os01g45990	root	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	To unravel the mechanisms of K+ uptake and its sensitivity to salt stress in the model plant rice, we isolated and functionally characterized OsAKT1, a potassium channel homologous to the Arabidopsis root inward rectifier AKT1
OsAKT1	Os01g0648000	LOC_Os01g45990	root	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	OsAKT1 transcripts were predominantly found in the coleoptile and in the roots of young rice seedlings
OsAKT1	Os01g0648000	LOC_Os01g45990	root	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	Patch-clamp studies on rice root protoplasts identified a K+ inward rectifier with similar channel properties as heterologously expressed OsAKT1
OsAKT1	Os01g0648000	LOC_Os01g45990	root	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	In line with the transcriptional downregulation of OsAKT1 in response to salt stress, inward K+ currents were significantly reduced in root protoplasts
OsAKT1	Os01g0648000	LOC_Os01g45990	root	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	Thus, OsAKT1 seems to represent the dominant salt-sensitive K+ uptake channel in rice roots
OsAKT1	Os01g0648000	LOC_Os01g45990	salt	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	To unravel the mechanisms of K+ uptake and its sensitivity to salt stress in the model plant rice, we isolated and functionally characterized OsAKT1, a potassium channel homologous to the Arabidopsis root inward rectifier AKT1
OsAKT1	Os01g0648000	LOC_Os01g45990	salt	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	In line with the transcriptional downregulation of OsAKT1 in response to salt stress, inward K+ currents were significantly reduced in root protoplasts
OsAKT1	Os01g0648000	LOC_Os01g45990	salt	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	Thus, OsAKT1 seems to represent the dominant salt-sensitive K+ uptake channel in rice roots
OsAKT1	Os01g0648000	LOC_Os01g45990	salt	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	Rice K+ uptake channel OsAKT1 is sensitive to salt stress
OsAKT1	Os01g0648000	LOC_Os01g45990	salt stress	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	To unravel the mechanisms of K+ uptake and its sensitivity to salt stress in the model plant rice, we isolated and functionally characterized OsAKT1, a potassium channel homologous to the Arabidopsis root inward rectifier AKT1
OsAKT1	Os01g0648000	LOC_Os01g45990	salt stress	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	In line with the transcriptional downregulation of OsAKT1 in response to salt stress, inward K+ currents were significantly reduced in root protoplasts
OsAKT1	Os01g0648000	LOC_Os01g45990	salt stress	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	Rice K+ uptake channel OsAKT1 is sensitive to salt stress
OsAKT1	Os01g0648000	LOC_Os01g45990	seedling	Rice K+ uptake channel OsAKT1 is sensitive to salt stress	OsAKT1 transcripts were predominantly found in the coleoptile and in the roots of young rice seedlings
OsAKT1	Os01g0648000	LOC_Os01g45990	potassium uptake	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex
OsAKT1	Os01g0648000	LOC_Os01g45990	root	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex
OsAKT1	Os01g0648000	LOC_Os01g45990	plant growth	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex	Disruption of Os-AKT1 significantly reduced the K+ content, which resulted in inhibition of plant growth and development.
OsAKT1	Os01g0648000	LOC_Os01g45990	growth	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex	Disruption of Os-AKT1 significantly reduced the K+ content, which resulted in inhibition of plant growth and development.
OsAKT1	Os01g0648000	LOC_Os01g45990	development	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex	Disruption of Os-AKT1 significantly reduced the K+ content, which resulted in inhibition of plant growth and development.
OsAKT1	Os01g0648000	LOC_Os01g45990	root	Overexpression of the rice AKT1 potassium channel affects potassium nutrition and rice drought tolerance.	The most prominent result of OsAKT1 overexpression was a reduction in sensitivity to osmotic/drought stress in transgenic plants: the data suggest that AKT1 overexpression improved rice osmotic and drought stress tolerance by increasing tissue levels of K(+), especially in the root
OsAKT1	Os01g0648000	LOC_Os01g45990	drought	Overexpression of the rice AKT1 potassium channel affects potassium nutrition and rice drought tolerance.	The most prominent result of OsAKT1 overexpression was a reduction in sensitivity to osmotic/drought stress in transgenic plants: the data suggest that AKT1 overexpression improved rice osmotic and drought stress tolerance by increasing tissue levels of K(+), especially in the root
OsAKT1	Os01g0648000	LOC_Os01g45990	tolerance	Overexpression of the rice AKT1 potassium channel affects potassium nutrition and rice drought tolerance.	The most prominent result of OsAKT1 overexpression was a reduction in sensitivity to osmotic/drought stress in transgenic plants: the data suggest that AKT1 overexpression improved rice osmotic and drought stress tolerance by increasing tissue levels of K(+), especially in the root
OsAKT1	Os01g0648000	LOC_Os01g45990	stress	Overexpression of the rice AKT1 potassium channel affects potassium nutrition and rice drought tolerance.	The most prominent result of OsAKT1 overexpression was a reduction in sensitivity to osmotic/drought stress in transgenic plants: the data suggest that AKT1 overexpression improved rice osmotic and drought stress tolerance by increasing tissue levels of K(+), especially in the root
OsAKT1	Os01g0648000	LOC_Os01g45990	drought stress	Overexpression of the rice AKT1 potassium channel affects potassium nutrition and rice drought tolerance.	The most prominent result of OsAKT1 overexpression was a reduction in sensitivity to osmotic/drought stress in transgenic plants: the data suggest that AKT1 overexpression improved rice osmotic and drought stress tolerance by increasing tissue levels of K(+), especially in the root
OsAKT1	Os01g0648000	LOC_Os01g45990	drought stress	Overexpression of the rice AKT1 potassium channel affects potassium nutrition and rice drought tolerance.	The most prominent result of OsAKT1 overexpression was a reduction in sensitivity to osmotic/drought stress in transgenic plants: the data suggest that AKT1 overexpression improved rice osmotic and drought stress tolerance by increasing tissue levels of K(+), especially in the root
OsAKT1	Os01g0648000	LOC_Os01g45990	stress tolerance	Overexpression of the rice AKT1 potassium channel affects potassium nutrition and rice drought tolerance.	The most prominent result of OsAKT1 overexpression was a reduction in sensitivity to osmotic/drought stress in transgenic plants: the data suggest that AKT1 overexpression improved rice osmotic and drought stress tolerance by increasing tissue levels of K(+), especially in the root
OsAKT1	Os01g0648000	LOC_Os01g45990	leaf	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	However, loss-of-function of OsAKT1 increased the sensitivity to excess Fe regarding leaf bronzing symptoms, reactive oxygen species generation, leaf spectral reflectance indices, and chlorophyll fluorescence
OsAKT1	Os01g0648000	LOC_Os01g45990	root	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	In conclusion, OsAKT1 is crucial for the tolerance of rice against Fe toxicity as K homeostasis affects Fe translocation from root to shoot
OsAKT1	Os01g0648000	LOC_Os01g45990	shoot	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	In conclusion, OsAKT1 is crucial for the tolerance of rice against Fe toxicity as K homeostasis affects Fe translocation from root to shoot
OsAKT1	Os01g0648000	LOC_Os01g45990	tolerance	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	In conclusion, OsAKT1 is crucial for the tolerance of rice against Fe toxicity as K homeostasis affects Fe translocation from root to shoot
OsAKT1	Os01g0648000	LOC_Os01g45990	potassium	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.
OsAKT1	Os01g0648000	LOC_Os01g45990	homeostasis	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	In conclusion, OsAKT1 is crucial for the tolerance of rice against Fe toxicity as K homeostasis affects Fe translocation from root to shoot
OsAKT1	Os01g0648000	LOC_Os01g45990	iron	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.
OsAKT1	Os01g0648000	LOC_Os01g45990	reactive oxygen species	Potassium Ion Channel Gene OsAKT1 Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	However, loss-of-function of OsAKT1 increased the sensitivity to excess Fe regarding leaf bronzing symptoms, reactive oxygen species generation, leaf spectral reflectance indices, and chlorophyll fluorescence
OsAKT2	Os05g0428700	LOC_Os05g35410	seedlings	Phosphatidic acid directly binds with rice potassium channel OsAKT2 to inhibit its activity.	Disruption of OsAKT2 results in delayed growth of rice seedlings under short-day conditions
OsAKT2	Os05g0428700	LOC_Os05g35410	growth	Phosphatidic acid directly binds with rice potassium channel OsAKT2 to inhibit its activity.	Disruption of OsAKT2 results in delayed growth of rice seedlings under short-day conditions
OsAKT2	Os05g0428700	LOC_Os05g35410	shoot	Phosphatidic acid directly binds with rice potassium channel OsAKT2 to inhibit its activity.	Here, we identified the rice OsAKT2 as the ortholog of Arabidopsis AtAKT2, which is primarily expressed in the shoot phloem and localized at the plasma membrane
OsAKT2	Os05g0428700	LOC_Os05g35410	potassium	Phosphatidic acid directly binds with rice potassium channel OsAKT2 to inhibit its activity.	Phosphatidic acid directly binds with rice potassium channel OsAKT2 to inhibit its activity.
OsAKT2	Os05g0428700	LOC_Os05g35410	phloem	Phosphatidic acid directly binds with rice potassium channel OsAKT2 to inhibit its activity.	Here, we identified the rice OsAKT2 as the ortholog of Arabidopsis AtAKT2, which is primarily expressed in the shoot phloem and localized at the plasma membrane
OsAKT2	Os05g0428700	LOC_Os05g35410	plasma membrane	Phosphatidic acid directly binds with rice potassium channel OsAKT2 to inhibit its activity.	Here, we identified the rice OsAKT2 as the ortholog of Arabidopsis AtAKT2, which is primarily expressed in the shoot phloem and localized at the plasma membrane
OsAKT2	Os05g0428700	LOC_Os05g35410	potassium	Multiple basic amino acid residues contribute to phosphatidic acid-mediated inhibition of rice potassium channel OsAKT2	Multiple basic amino acid residues contribute to phosphatidic acid-mediated inhibition of rice potassium channel OsAKT2
OsAKT2	Os05g0428700	LOC_Os05g35410	plasma membrane	Multiple basic amino acid residues contribute to phosphatidic acid-mediated inhibition of rice potassium channel OsAKT2	Here, using a PA biosensor (PAleon), we found that the exogenous PA treatment significantly increased the PA level at the plasma membrane of Xenopus oocytes which were used to express OsAKT2 for electrophysiological assays
OsAKT2	Os05g0428700	LOC_Os05g35410	grain	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution
OsAKT2	Os05g0428700	LOC_Os05g35410	grain	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	In addition, OsAKT2 also regulates the translocation of K+ and sucrose from old leaves to young leaves, and affects grain shape and yield
OsAKT2	Os05g0428700	LOC_Os05g35410	salt	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution
OsAKT2	Os05g0428700	LOC_Os05g35410	salt	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Here, we provide physiological and genetic evidence of the involvement of phloem-localized OsAKT2 in rice salt tolerance
OsAKT2	Os05g0428700	LOC_Os05g35410	salt	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Under salt stress, a T-DNA knock-out mutant, osakt2 and two CRISPR lines showed a more sensitive phenotype and higher Na+ accumulation than wild type
OsAKT2	Os05g0428700	LOC_Os05g35410	tolerance	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution
OsAKT2	Os05g0428700	LOC_Os05g35410	tolerance	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Here, we provide physiological and genetic evidence of the involvement of phloem-localized OsAKT2 in rice salt tolerance
OsAKT2	Os05g0428700	LOC_Os05g35410	potassium	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution
OsAKT2	Os05g0428700	LOC_Os05g35410	grain yield	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution
OsAKT2	Os05g0428700	LOC_Os05g35410	yield	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution
OsAKT2	Os05g0428700	LOC_Os05g35410	yield	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	In addition, OsAKT2 also regulates the translocation of K+ and sucrose from old leaves to young leaves, and affects grain shape and yield
OsAKT2	Os05g0428700	LOC_Os05g35410	salt tolerance	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution
OsAKT2	Os05g0428700	LOC_Os05g35410	salt tolerance	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Here, we provide physiological and genetic evidence of the involvement of phloem-localized OsAKT2 in rice salt tolerance
OsAKT2	Os05g0428700	LOC_Os05g35410	salt stress	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Under salt stress, a T-DNA knock-out mutant, osakt2 and two CRISPR lines showed a more sensitive phenotype and higher Na+ accumulation than wild type
OsAKT2	Os05g0428700	LOC_Os05g35410	phloem	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	Disruption of OsAKT2 decreases K+ concentration in phloem sap and inhibits shoot-to-root redistribution of K+
OsAKT2	Os05g0428700	LOC_Os05g35410	sucrose	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	In addition, OsAKT2 also regulates the translocation of K+ and sucrose from old leaves to young leaves, and affects grain shape and yield
OsAKT2	Os05g0428700	LOC_Os05g35410	grain shape	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K + redistribution	In addition, OsAKT2 also regulates the translocation of K+ and sucrose from old leaves to young leaves, and affects grain shape and yield
OsAKT2	Os05g0428700	LOC_Os05g35410	salt	The rectification control and physiological relevance of potassium channel OsAKT2.	Additionally, overexpression of OsAKT2 ameliorated the salt tolerance of Arabidopsis
OsAKT2	Os05g0428700	LOC_Os05g35410	tolerance	The rectification control and physiological relevance of potassium channel OsAKT2.	Additionally, overexpression of OsAKT2 ameliorated the salt tolerance of Arabidopsis
OsAKT2	Os05g0428700	LOC_Os05g35410	salt tolerance	The rectification control and physiological relevance of potassium channel OsAKT2.	Additionally, overexpression of OsAKT2 ameliorated the salt tolerance of Arabidopsis
OsAKT2	Os05g0428700	LOC_Os05g35410	phloem	The rectification control and physiological relevance of potassium channel OsAKT2.	Overexpression of OsAKT2 complemented the K+ deficiency in the phloem sap and leaves of the mutant plants but did not significantly contribute to the transport of sugars
OsAKT2	Os05g0428700	LOC_Os05g35410	phloem	The rectification control and physiological relevance of potassium channel OsAKT2.	However, the expression of OsAKT2-K191R overcame both the shortage of phloem K+ and sucrose of the akt2 mutant, which was comparable to the effects of the overexpression of AtAKT2, while the expression of the inward mutation AtAKT2-R195K resembled the effects of OsAKT2
OsAKT2	Os05g0428700	LOC_Os05g35410	sucrose	The rectification control and physiological relevance of potassium channel OsAKT2.	However, the expression of OsAKT2-K191R overcame both the shortage of phloem K+ and sucrose of the akt2 mutant, which was comparable to the effects of the overexpression of AtAKT2, while the expression of the inward mutation AtAKT2-R195K resembled the effects of OsAKT2
OsAL11	Os11g0244800	LOC_Os11g14010	seed	Natural variation of Alfin-like family affects seed size and drought tolerance in rice.	1 and Hap7 of OsAL11 were favorable haplotypes of seed weight and germination under osmotic stress
OsAL11	Os11g0244800	LOC_Os11g14010	drought	Natural variation of Alfin-like family affects seed size and drought tolerance in rice.	1 and OsAL11 in rice weakened the tolerance to drought in the adult stage
OsAL11	Os11g0244800	LOC_Os11g14010	tolerance	Natural variation of Alfin-like family affects seed size and drought tolerance in rice.	1 and OsAL11 in rice weakened the tolerance to drought in the adult stage
OsAL11	Os11g0244800	LOC_Os11g14010	stress	Natural variation of Alfin-like family affects seed size and drought tolerance in rice.	1 and Hap7 of OsAL11 were favorable haplotypes of seed weight and germination under osmotic stress
OsAL11	Os11g0244800	LOC_Os11g14010	seed weight	Natural variation of Alfin-like family affects seed size and drought tolerance in rice.	1 and Hap7 of OsAL11 were favorable haplotypes of seed weight and germination under osmotic stress
OsAL11	Os11g0244800	LOC_Os11g14010	abscisic acid	Natural variation of Alfin-like family affects seed size and drought tolerance in rice.	1 and osal11 mutants have larger seeds and are more sensitive to abscisic acid and mannitol during germination stage
OsAL11	Os11g0244800	LOC_Os11g14010	osmotic stress	Natural variation of Alfin-like family affects seed size and drought tolerance in rice.	1 and Hap7 of OsAL11 were favorable haplotypes of seed weight and germination under osmotic stress
OsAL7.1	Os07g0233300	LOC_Os07g12910	seed size	Natural variation of Alfin-like family affects seed size and drought tolerance in rice	Natural variation of Alfin-like family affects seed size and drought tolerance in rice
OsAL7.1	Os07g0233300	LOC_Os07g12910	drought tolerance	Natural variation of Alfin-like family affects seed size and drought tolerance in rice	Natural variation of Alfin-like family affects seed size and drought tolerance in rice
OsAld-Y	Os06g0608700	LOC_Os06g40640	growth	Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice.	Our results suggest that the OsAld-Y participates in Chl accumulation, chloroplast development and plant growth by influencing the photosynthetic rate of leaves and the sugar metabolism of rice
OsAld-Y	Os06g0608700	LOC_Os06g40640	chloroplast	Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice.	Our results suggest that the OsAld-Y participates in Chl accumulation, chloroplast development and plant growth by influencing the photosynthetic rate of leaves and the sugar metabolism of rice
OsAld-Y	Os06g0608700	LOC_Os06g40640	development	Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice.	Our results suggest that the OsAld-Y participates in Chl accumulation, chloroplast development and plant growth by influencing the photosynthetic rate of leaves and the sugar metabolism of rice
OsAld-Y	Os06g0608700	LOC_Os06g40640	sugar	Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice.	Our results suggest that the OsAld-Y participates in Chl accumulation, chloroplast development and plant growth by influencing the photosynthetic rate of leaves and the sugar metabolism of rice
OsAld-Y	Os06g0608700	LOC_Os06g40640	plant growth	Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice.	Our results suggest that the OsAld-Y participates in Chl accumulation, chloroplast development and plant growth by influencing the photosynthetic rate of leaves and the sugar metabolism of rice
OsAld-Y	Os06g0608700	LOC_Os06g40640	chloroplast development	Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice.	Our results suggest that the OsAld-Y participates in Chl accumulation, chloroplast development and plant growth by influencing the photosynthetic rate of leaves and the sugar metabolism of rice
OsALD1	Os03g0195100	LOC_Os03g09910	resistance	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in Disease Resistance Response against Infection with Magnaporthe oryzae.	Taken together, we conclude that OsALD1 plays a role in disease resistance response of rice against the infection with rice blast fungus
OsALD1	Os03g0195100	LOC_Os03g09910	chloroplast	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in Disease Resistance Response against Infection with Magnaporthe oryzae.	OsALD1 proteins predominantly localized at the chloroplast in the plant cells
OsALD1	Os03g0195100	LOC_Os03g09910	disease	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in Disease Resistance Response against Infection with Magnaporthe oryzae.	Taken together, we conclude that OsALD1 plays a role in disease resistance response of rice against the infection with rice blast fungus
OsALD1	Os03g0195100	LOC_Os03g09910	blast	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in Disease Resistance Response against Infection with Magnaporthe oryzae.	OsALD1 mRNA was strongly transcribed in the infected leaves of rice plants by Magnaporthe oryzae, the rice blast fungus
OsALD1	Os03g0195100	LOC_Os03g09910	blast	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in Disease Resistance Response against Infection with Magnaporthe oryzae.	Taken together, we conclude that OsALD1 plays a role in disease resistance response of rice against the infection with rice blast fungus
OsALD1	Os03g0195100	LOC_Os03g09910	disease resistance	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in Disease Resistance Response against Infection with Magnaporthe oryzae.	Taken together, we conclude that OsALD1 plays a role in disease resistance response of rice against the infection with rice blast fungus
OsALD1	Os03g0195100	LOC_Os03g09910	magnaporthe oryzae	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in Disease Resistance Response against Infection with Magnaporthe oryzae.	OsALD1 mRNA was strongly transcribed in the infected leaves of rice plants by Magnaporthe oryzae, the rice blast fungus
OsALD1	Os03g0195100	LOC_Os03g09910	resistant	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in Disease Resistance Response against Infection with Magnaporthe oryzae.	GM rice plants over-expressing OsALD1 were resistant to the fungal infection
OsALDH22	Os07g0688800	LOC_Os07g48920	salinity	Functional Characterization of an Aldehyde Dehydrogenase Homologue in Rice	Various elevated levels of OsALDH22 expression have been detected when the seedlings exposed to abiotic stresses including dehydration, high salinity and abscisic acid (ABA)
OsALDH22	Os07g0688800	LOC_Os07g48920	abiotic stress	Functional Characterization of an Aldehyde Dehydrogenase Homologue in Rice	Various elevated levels of OsALDH22 expression have been detected when the seedlings exposed to abiotic stresses including dehydration, high salinity and abscisic acid (ABA)
OsALDH22	Os07g0688800	LOC_Os07g48920	seedling	Functional Characterization of an Aldehyde Dehydrogenase Homologue in Rice	Various elevated levels of OsALDH22 expression have been detected when the seedlings exposed to abiotic stresses including dehydration, high salinity and abscisic acid (ABA)
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	panicle	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b	Northern blot and immunoblot analyses revealed that ALDH2b was constitutively present in all the organs examined, whereas ALDH2a was expressed in leaves of dark-grown seedlings and panicles
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	seedling	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b	Northern blot and immunoblot analyses revealed that ALDH2b was constitutively present in all the organs examined, whereas ALDH2a was expressed in leaves of dark-grown seedlings and panicles
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	mitochondria	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b	We suggest that the rice ALDH2a and ALDH2b genes are orthologues of maize mitochondrial ALDH genes, rf2b and rf2a, respectively
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	mitochondria	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	tapetum degeneration	The mitochondrial aldehyde dehydrogenase OsALDH2b negatively regulates tapetum degeneration in rice.	The mitochondrial aldehyde dehydrogenase OsALDH2b negatively regulates tapetum degeneration in rice.
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	programmed cell death	The mitochondrial aldehyde dehydrogenase OsALDH2b negatively regulates tapetum degeneration in rice.	The mitochondrial aldehyde dehydrogenase OsALDH2b negatively regulates tapetum degeneration in rice.
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	male reproductive development	The mitochondrial aldehyde dehydrogenase OsALDH2b negatively regulates tapetum degeneration in rice.	These results demonstrate that OsALDH2b negatively regulates tapetal PCD and is required for male reproductive development, providing insights into the regulation of tapetum development in plants.
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	reproductive development	The mitochondrial aldehyde dehydrogenase OsALDH2b negatively regulates tapetum degeneration in rice.	These results demonstrate that OsALDH2b negatively regulates tapetal PCD and is required for male reproductive development, providing insights into the regulation of tapetum development in plants.
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	development	The mitochondrial aldehyde dehydrogenase OsALDH2b negatively regulates tapetum degeneration in rice.	These results demonstrate that OsALDH2b negatively regulates tapetal PCD and is required for male reproductive development, providing insights into the regulation of tapetum development in plants.
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	leaf	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	Loss of function of OsALDH2B1 greatly enhanced resistance to broad-spectrum pathogens, including fungal blast, bacterial leaf blight, and leaf streak, but caused severe phenotypic changes such as male sterility and reduced plant size, grain size, and number
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	resistance	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	Loss of function of OsALDH2B1 greatly enhanced resistance to broad-spectrum pathogens, including fungal blast, bacterial leaf blight, and leaf streak, but caused severe phenotypic changes such as male sterility and reduced plant size, grain size, and number
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	grain	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	Loss of function of OsALDH2B1 greatly enhanced resistance to broad-spectrum pathogens, including fungal blast, bacterial leaf blight, and leaf streak, but caused severe phenotypic changes such as male sterility and reduced plant size, grain size, and number
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	sterility	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	Loss of function of OsALDH2B1 greatly enhanced resistance to broad-spectrum pathogens, including fungal blast, bacterial leaf blight, and leaf streak, but caused severe phenotypic changes such as male sterility and reduced plant size, grain size, and number
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	grain size	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	Loss of function of OsALDH2B1 greatly enhanced resistance to broad-spectrum pathogens, including fungal blast, bacterial leaf blight, and leaf streak, but caused severe phenotypic changes such as male sterility and reduced plant size, grain size, and number
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	male sterility	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	Loss of function of OsALDH2B1 greatly enhanced resistance to broad-spectrum pathogens, including fungal blast, bacterial leaf blight, and leaf streak, but caused severe phenotypic changes such as male sterility and reduced plant size, grain size, and number
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	transcriptional regulator	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	OsALDH2B1 has its primary function as an aldehyde dehydrogenase and a moonlight function as a transcriptional regulator
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	fungal blast	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	Loss of function of OsALDH2B1 greatly enhanced resistance to broad-spectrum pathogens, including fungal blast, bacterial leaf blight, and leaf streak, but caused severe phenotypic changes such as male sterility and reduced plant size, grain size, and number
OsALDH2b|OsALDH2B1|ALDH2b	Os06g0270900	LOC_Os06g15990	dehydrogenase	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	OsALDH2B1 has its primary function as an aldehyde dehydrogenase and a moonlight function as a transcriptional regulator
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	seed development	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability	These pigments started to accumulate in the late seed developmental stage, the time when OsALDH7 expression began to increase significantly
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	endosperm	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability	Interestingly, endosperms from the osaldh7 null mutants accumulated brown pigments during desiccation and storage
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	blast	Molecular cloning and differential expression of an aldehyde dehydrogenase gene in rice leaves in response to infection by blast fungus	Using differential display RT-PCR and cDNA library screening, a full-length aldehyde dehydrogenase cDNA (ALDH7B7) was isolated from rice leaves infected by incompatible race of blast fungus Magnaporthe grisea
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	blast	Molecular cloning and differential expression of an aldehyde dehydrogenase gene in rice leaves in response to infection by blast fungus	ALDH7B7 expression was induced by blast fungus infection, ultraviolet, mechanical wound in rice leaves and was not detected in untreated rice organs
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	blast	Molecular cloning and differential expression of an aldehyde dehydrogenase gene in rice leaves in response to infection by blast fungus	The function of ALDH7B7 in the interaction process between blast fungus and rice is discussed
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	seed	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability	These pigments started to accumulate in the late seed developmental stage, the time when OsALDH7 expression began to increase significantly
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	seed	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability	These results suggest that OsALDH7 is involved in removing various aldehydes formed by oxidative stress during seed desiccation
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	seed	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability	These data imply that OsALDH7 plays an important role in maintaining seed viability by detoxifying the aldehydes generated by lipid peroxidation
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	endosperm	Mutation of OsALDH7 causes a yellow-colored endosperm associated with accumulation of oryzamutaic acid A in rice	Here we reported a mutant with yellow-colored endosperm in rice, and showed that the yellow endosperm was caused by mutation of OsALDH7
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	endosperm	Mutation of OsALDH7 causes a yellow-colored endosperm associated with accumulation of oryzamutaic acid A in rice	Mutation of OsALDH7 causes a yellow-colored endosperm associated with accumulation of oryzamutaic acid A in rice
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	abiotic stress	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability	We obtained T-DNA insertional mutants in OsALDH7, which is remarkably inducible by oxidative and abiotic stresses
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	seed	Mutation of OsALDH7 causes a yellow-colored endosperm associated with accumulation of oryzamutaic acid A in rice	OsALDH7 is expressed in all tissues detected, with the highest level in mature seeds
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	oxidative	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability	We obtained T-DNA insertional mutants in OsALDH7, which is remarkably inducible by oxidative and abiotic stresses
OsALDH7|OsALDH7B6|ALDH7B7	Os09g0440300	LOC_Os09g26880	oxidative	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability	These results suggest that OsALDH7 is involved in removing various aldehydes formed by oxidative stress during seed desiccation
OsALKBH1	Os03g0816500	LOC_Os03g60190	6mA demethylation	Identification and analysis of adenine N6-methylation sites in the rice genome.	We show that OsALKBH1 may be potentially involved in 6mA demethylation in rice.
OsALKBH1	Os03g0816500	LOC_Os03g60190	demethylation	Identification and analysis of adenine N6-methylation sites in the rice genome.	We show that OsALKBH1 may be potentially involved in 6mA demethylation in rice.
OsALMT4	Os01g0221600	LOC_Os01g12210	xylem	Altered expression of a malate-permeable anion channel, OsALMT4, disrupts mineral nutrition.	Transgenic rice lines over-expressing (OX) OsALMT4 released malate from the roots constitutively and had two-fold higher malate concentrations in the xylem sap than nulls indicating greater concentrations of malate in the apoplast
OsALMT4	Os01g0221600	LOC_Os01g12210	plasma membrane	Altered expression of a malate-permeable anion channel, OsALMT4, disrupts mineral nutrition.	We show that OsALMT4 is expressed in roots and shoots and the OsALMT4 protein localizes to the plasma membrane
OsALMT4	Os01g0221600	LOC_Os01g12210	growth	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.
OsALMT4	Os01g0221600	LOC_Os01g12210	growth	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.	Growth of transgenic lines with either increased OsALMT4 expression or reduced expression was measured in different environments
OsALMT4	Os01g0221600	LOC_Os01g12210	growth	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.	Altering OsALMT4 expression compromises growth in low-light environments
OsALMT4	Os01g0221600	LOC_Os01g12210	grain	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.	Here, we show that OsALMT4 is expressed widely in roots, shoots, flowers, and grain but not guard cells
OsALMT4	Os01g0221600	LOC_Os01g12210	salicylic acid	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.	Malate efflux from the transgenic plants over-expressing OsALMT4 was inhibited by niflumate and salicylic acid
OsALMT4	Os01g0221600	LOC_Os01g12210	biomass	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.	When day-time light was reduced from 700 to 300 mol m-2s-1 independent transgenic lines with either increased or decreased OsALMT4 expression accumulated less biomass compared to their null controls
OsALMT4	Os01g0221600	LOC_Os01g12210	plasma membrane	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.	Previous studies showed that OsALMT4 localizes to the plasma membrane and that expression in transgenic rice lines results in a constitutive release of malate from the roots
OsALMT7	Os02g0673100	LOC_Os02g45160	panicle	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.
OsALMT7	Os02g0673100	LOC_Os02g45160	panicle	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.	 Consistent with a function for OsALMT7 as a malate transporter, the panicle of the paab1-1 mutant contained less malate than wild type, particularly at the apical portions, and injection of malate into the paab1-1 panicle could alleviate the spikelet degeneration phenotype
OsALMT7	Os02g0673100	LOC_Os02g45160	spikelet	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.	 Consistent with a function for OsALMT7 as a malate transporter, the panicle of the paab1-1 mutant contained less malate than wild type, particularly at the apical portions, and injection of malate into the paab1-1 panicle could alleviate the spikelet degeneration phenotype
OsALMT7	Os02g0673100	LOC_Os02g45160	grain	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.
OsALMT7	Os02g0673100	LOC_Os02g45160	grain yield	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.
OsALMT7	Os02g0673100	LOC_Os02g45160	yield	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.
OsALMT7	Os02g0673100	LOC_Os02g45160	panicle size	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.	OsALMT7 Maintains Panicle Size and Grain Yield in Rice by Mediating Malate Transport.
OsALMT7	Os02g0673100	LOC_Os02g45160	development	Multiple ALMT subunits combine to form functional anion channels: A case study for rice ALMT7.	 The rice malate permeable OsALMT7 influences panicle development and grain yield
OsALMT7	Os02g0673100	LOC_Os02g45160	grain	Multiple ALMT subunits combine to form functional anion channels: A case study for rice ALMT7.	 The rice malate permeable OsALMT7 influences panicle development and grain yield
OsALMT7	Os02g0673100	LOC_Os02g45160	panicle	Multiple ALMT subunits combine to form functional anion channels: A case study for rice ALMT7.	 The rice malate permeable OsALMT7 influences panicle development and grain yield
OsALMT7	Os02g0673100	LOC_Os02g45160	panicle	Multiple ALMT subunits combine to form functional anion channels: A case study for rice ALMT7.	 A truncated OsALMT7 mutant, panicle apical abortion1 (paab1) lacking at least 2 transmembrane helices, mediates reduced malate efflux resulting in yield reducing
OsALMT7	Os02g0673100	LOC_Os02g45160	grain yield	Multiple ALMT subunits combine to form functional anion channels: A case study for rice ALMT7.	 The rice malate permeable OsALMT7 influences panicle development and grain yield
OsALMT7	Os02g0673100	LOC_Os02g45160	yield	Multiple ALMT subunits combine to form functional anion channels: A case study for rice ALMT7.	 The rice malate permeable OsALMT7 influences panicle development and grain yield
OsALMT7	Os02g0673100	LOC_Os02g45160	yield	Multiple ALMT subunits combine to form functional anion channels: A case study for rice ALMT7.	 A truncated OsALMT7 mutant, panicle apical abortion1 (paab1) lacking at least 2 transmembrane helices, mediates reduced malate efflux resulting in yield reducing
OsALMT7	Os02g0673100	LOC_Os02g45160	panicle development	Multiple ALMT subunits combine to form functional anion channels: A case study for rice ALMT7.	 The rice malate permeable OsALMT7 influences panicle development and grain yield
OsALS1	Os03g0755100	LOC_Os03g54790	transporter	A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice	OsALS1 encodes a half-size ABC transporter that is a member of the TAP (transporter associated with antigen processing) sub-group
OsALS1	Os03g0755100	LOC_Os03g54790	transcription factor	A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice	Here we functionally characterized a rice gene, Os03g0755100 (OsALS1), that is regulated by ART1, a C2H2-type zinc finger transcription factor
OsALS1	Os03g0755100	LOC_Os03g54790	root	A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice	Expression of OsALS1 was rapidly and specifically induced by Al in the roots, but not by other metals or low pH
OsALS1	Os03g0755100	LOC_Os03g54790	root	A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice	OsALS1 was localized at all cells of the roots
OsALS1	Os03g0755100	LOC_Os03g54790	root	A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice	Comparison of Al accumulation patterns between wild-type and osals1 mutants showed that there was no difference in Al levels in the cell sap of root tips between wild-type and the mutants, but the mutants accumulated more Al in the cytosol and nucleus than the wild-type
OsAM1	Os03g0650400	LOC_Os03g44760	meiosis	OsAM1 is required for leptotene-zygotene transition in rice	In contrast, in pair2, Osmer3 and zep1 mutants, OsAM1 could be loaded normally, suggesting that OsAM1 plays a fundamental role in building the proper chromosome structure at the beginning of meiosis
OsAM1	Os03g0650400	LOC_Os03g44760	pollen	OsAM1 is required for leptotene-zygotene transition in rice	In the Osam1 mutant, pollen mother cells are arrested at leptotene, showing that OsAM1 is required for the leptotene-zygotene transition
OsAM1	Os03g0650400	LOC_Os03g44760	meiotic	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	Finally, we found that the centromeric localization of OsSGO1 depends on OsAM1, not other meiotic proteins such as OsREC8, PAIR2, OsMER3, or ZEP1
OsAM1	Os03g0650400	LOC_Os03g44760	meiotic	OsAM1 is required for leptotene-zygotene transition in rice	Very faint OsREC8 foci persisted in the Osam1 mutant, indicating that OsAM1 is not required for the initial meiotic recruitment of OsREC8
OsAM1	Os03g0650400	LOC_Os03g44760	meiotic	OsAM1 is required for leptotene-zygotene transition in rice	In the absence of OsAM1, many other critical meiotic components, including PAIR2, ZEP1 and OsMER3, could not be correctly installed onto chromosomes
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	transporter	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	The NH4(+) uptake of roots is mainly governed by membrane transporters, with OsAMT1;1 being a prominent member of the OsAMT1 gene family that is known to be involved in NH4(+) transport in rice plants
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	Over-expression of the rice OsAMT1-1 gene increases ammonium uptake and content, but impairs growth and development of plants under high ammonium nutrition	A transgenic approach was undertaken to investigate the role of a rice ammonium transporter (OsAMT1-1) in ammonium uptake and consequent ammonium assimilation under different nitrogen regimes
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	growth	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	OsAMT1;1 also enhanced overall plant growth, especially under suboptimal NH4(+) levels
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	growth	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	These results suggest that OsAMT1;1 has the potential for improving nitrogen use efficiency, plant growth, and grain yield under both suboptimal and optimal nitrogen fertilizer conditions
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	transporter	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	Gene expression analysis of members of ammonium transporter gene family in flag leaves during active grain filling stage revealed that all the three members of OsAMT3 family genes (OsAMT1;1-3), only one member of OsAMT2 family i
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	To study the regulation of ammonium uptake into rice roots, three ammonium transporter genes (OsAMT1;1, 1;2 and 1;3; Oryza sativa ammonium transporter) were isolated and examined
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	grain filling	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	Gene expression analysis of members of ammonium transporter gene family in flag leaves during active grain filling stage revealed that all the three members of OsAMT3 family genes (OsAMT1;1-3), only one member of OsAMT2 family i
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	grain filling	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	domestication	Diversity and selective sweep in the OsAMT1;1 genomic region of rice	CONCLUSIONS: The severe reduction in nucleotide variation at OsAMT1;1 in rice was caused by a selective sweep around OsAMT1;1, which may reflect the nitrogen uptake system under strong selection by the paddy soil during the domestication of rice
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	yield	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	These results suggest that OsAMT1;1 has the potential for improving nitrogen use efficiency, plant growth, and grain yield under both suboptimal and optimal nitrogen fertilizer conditions
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	transporter	Diversity and selective sweep in the OsAMT1;1 genomic region of rice	OsAMT1;1 is a high-affinity ammonium transporter in rice (Oryza sativa L
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	transporter	Diversity and selective sweep in the OsAMT1;1 genomic region of rice	rufipogon on either side of the promoter of OsAMT1;1, demonstrating a strong natural selection within or nearby the ammonium transporter
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	transporter	Over-expression of the rice OsAMT1-1 gene increases ammonium uptake and content, but impairs growth and development of plants under high ammonium nutrition	A transgenic approach was undertaken to investigate the role of a rice ammonium transporter (OsAMT1-1) in ammonium uptake and consequent ammonium assimilation under different nitrogen regimes
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	transporter	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	seed	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	This study shows that OsAMT1;1 is a constitutively expressed, nitrogen-responsive gene, and its protein product is localized in the plasma membrane
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	These results suggest that OsAMT1;1 has the potential for improving nitrogen use efficiency, plant growth, and grain yield under both suboptimal and optimal nitrogen fertilizer conditions
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	grain	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	These results suggest that OsAMT1;1 has the potential for improving nitrogen use efficiency, plant growth, and grain yield under both suboptimal and optimal nitrogen fertilizer conditions
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	grain yield	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	These results suggest that OsAMT1;1 has the potential for improving nitrogen use efficiency, plant growth, and grain yield under both suboptimal and optimal nitrogen fertilizer conditions
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	shoot	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	, OsAMT2;3 and the high affinity OsAMT1;1 were differentially expressed and were affected by different doses of nitrogen
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	Diversity and selective sweep in the OsAMT1;1 genomic region of rice	CONCLUSIONS: The severe reduction in nucleotide variation at OsAMT1;1 in rice was caused by a selective sweep around OsAMT1;1, which may reflect the nitrogen uptake system under strong selection by the paddy soil during the domestication of rice
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	transporter	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	To study the regulation of ammonium uptake into rice roots, three ammonium transporter genes (OsAMT1;1, 1;2 and 1;3; Oryza sativa ammonium transporter) were isolated and examined
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	transporter	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	grain	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	Gene expression analysis of members of ammonium transporter gene family in flag leaves during active grain filling stage revealed that all the three members of OsAMT3 family genes (OsAMT1;1-3), only one member of OsAMT2 family i
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	grain	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	The NH4(+) uptake of roots is mainly governed by membrane transporters, with OsAMT1;1 being a prominent member of the OsAMT1 gene family that is known to be involved in NH4(+) transport in rice plants
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions	Transgenic rice lines (L-2 and L-3) overexpressing the OsAMT1;1 gene had the same root structure as the wild type (WT)
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	Ammonium application to roots following a period of nitrogen starvation induced accumulation of OsAMT1;1 and OsAMT1;2 mRNA, but a decrease of OsAMT1;3 mRNA levels
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The expression patterns of the three genes showed good correlation (positive in OsAMT1;1 and OsAMT1;2, negative in OsAMT1;3) with the root tissue contents of glutamine but not of ammonium
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	growth	Over-expression of the rice OsAMT1-1 gene increases ammonium uptake and content, but impairs growth and development of plants under high ammonium nutrition	Over-expression of the rice OsAMT1-1 gene increases ammonium uptake and content, but impairs growth and development of plants under high ammonium nutrition
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	Ammonium application to roots following a period of nitrogen starvation induced accumulation of OsAMT1;1 and OsAMT1;2 mRNA, but a decrease of OsAMT1;3 mRNA levels
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	shoot	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	growth	The rice OsAMT1;1 is a proton-independent feedback regulated ammonium transporter.	Inhibition of yeast growth or currents elicited from oocytes by ammonium assimilation inhibitor L-methionine sulfoximine indicates that NH4 (+) transport by OsAMT1;1 is likely feedback regulated by accumulation of the substrate
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	transporter	The rice OsAMT1;1 is a proton-independent feedback regulated ammonium transporter.	Our results show that OsAMT1;1 is a NH4 (+) transporter with relatively lower affinity to NH4 (+) (110-129 μM in oocytes and yeast cells, respectively)
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	Kinase	The rice OsAMT1;1 is a proton-independent feedback regulated ammonium transporter.	In addition, effects of phosphorylation inhibitors imply that NH4 (+) uptake by OsAMT1;1 is also modulated by tyrosine-specific protein kinase or calcium-regulated serine/threonine-specific protein phosphatase involved phosphorylation processes
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	protein phosphatase	The rice OsAMT1;1 is a proton-independent feedback regulated ammonium transporter.	In addition, effects of phosphorylation inhibitors imply that NH4 (+) uptake by OsAMT1;1 is also modulated by tyrosine-specific protein kinase or calcium-regulated serine/threonine-specific protein phosphatase involved phosphorylation processes
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	homeostasis	The OsAMT1.1 gene functions in ammonium uptake and ammonium-potassium homeostasis over low and high ammonium concentration ranges.	The OsAMT1.1 gene functions in ammonium uptake and ammonium-potassium homeostasis over low and high ammonium concentration ranges.
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	Three polarly localized ammonium transporter 1 members are cooperatively responsible for ammonium uptake in rice under low ammonium condition	 Spatial expression analysis showed that the upregulated expression of OsAMT1;1 and OsAMT1;2 and downregulated expression of OsAMT1;3 by ammonium were higher in the root mature region than in the root tips
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	plasma membrane	Three polarly localized ammonium transporter 1 members are cooperatively responsible for ammonium uptake in rice under low ammonium condition	 Upon exposure to ammonium, localization of OsAMT1;1 and OsAMT1;2 was also observed in the endoplasmic reticulum, but their abundance in the plasma membrane was not changed
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	nitrogen	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.
OsAMT1;1|OsAMT1.1	Os04g0509600	LOC_Os04g43070	root	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.	 The two independent double mutants (dko) defective in OsAMT1;1 and OsAMT1;2 failed to induce NH4+ uptake and stimulate LR formation, suggesting that OsAMT1s conferred the substrate-dependent root NH4+ foraging
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	shoot	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	root	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	root	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	In situ mRNA detection revealed that OsAMT1;2 is expressed in the central cylinder and cell surface of root tips
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	root	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	root	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	Ammonium application to roots following a period of nitrogen starvation induced accumulation of OsAMT1;1 and OsAMT1;2 mRNA, but a decrease of OsAMT1;3 mRNA levels
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	root	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The expression patterns of the three genes showed good correlation (positive in OsAMT1;1 and OsAMT1;2, negative in OsAMT1;3) with the root tissue contents of glutamine but not of ammonium
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	nitrogen	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	nitrogen	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	Ammonium application to roots following a period of nitrogen starvation induced accumulation of OsAMT1;1 and OsAMT1;2 mRNA, but a decrease of OsAMT1;3 mRNA levels
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	shoot	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	nitrogen	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	transporter	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	root	Three polarly localized ammonium transporter 1 members are cooperatively responsible for ammonium uptake in rice under low ammonium condition	 Spatial expression analysis showed that the upregulated expression of OsAMT1;1 and OsAMT1;2 and downregulated expression of OsAMT1;3 by ammonium were higher in the root mature region than in the root tips
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	plasma membrane	Three polarly localized ammonium transporter 1 members are cooperatively responsible for ammonium uptake in rice under low ammonium condition	 Upon exposure to ammonium, localization of OsAMT1;1 and OsAMT1;2 was also observed in the endoplasmic reticulum, but their abundance in the plasma membrane was not changed
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	nitrogen	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	root	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.
OsAMT1;2|OsAMT1.2	Os02g0620600	LOC_Os02g40730	root	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.	 The two independent double mutants (dko) defective in OsAMT1;1 and OsAMT1;2 failed to induce NH4+ uptake and stimulate LR formation, suggesting that OsAMT1s conferred the substrate-dependent root NH4+ foraging
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	root	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	shoot	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	nitrogen	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	root	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	root	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	Ammonium application to roots following a period of nitrogen starvation induced accumulation of OsAMT1;1 and OsAMT1;2 mRNA, but a decrease of OsAMT1;3 mRNA levels
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	root	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The expression patterns of the three genes showed good correlation (positive in OsAMT1;1 and OsAMT1;2, negative in OsAMT1;3) with the root tissue contents of glutamine but not of ammonium
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	shoot	Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice	Northern blot analysis showed a distinct expression pattern for the three genes; more constitutive expression in shoots and roots for OsAMT1;1, root-specific and ammonium-inducible expression for OsAMT1;2, and root-specific and nitrogen-derepressible expression for OsAMT1;3
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	transporter	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	nitrogen	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	The three members of the rice OsAMT1 gene family of ammonium transporters show distinct expression patterns; constitutive and ammonium-promoted expression in shoots and roots for OsAMT1;1; root-specific and ammonium-inducible expression for OsAMT1;2; root-specific and nitrogen-repressible expression for OsAMT1;3 [Sonoda et al
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	nitrogen	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice	Ammonium application to roots following a period of nitrogen starvation induced accumulation of OsAMT1;1 and OsAMT1;2 mRNA, but a decrease of OsAMT1;3 mRNA levels
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	root	Identification of structural elements involved in fine-tuning of the transport activity of the rice ammonium transporter OsAMT1;3.	In this report, we demonstrate that the rice root expressed OsAMT1;3 (Oryza sativa ammonium transporter 1;3) functions as a typical high-affinity NH4(+) transporter and is weakly permeable to MeA(+) using growth assays in NH4(+) uptake defective yeast cells and electrophysiological measurements in Xenopus oocytes
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	growth	Identification of structural elements involved in fine-tuning of the transport activity of the rice ammonium transporter OsAMT1;3.	In this report, we demonstrate that the rice root expressed OsAMT1;3 (Oryza sativa ammonium transporter 1;3) functions as a typical high-affinity NH4(+) transporter and is weakly permeable to MeA(+) using growth assays in NH4(+) uptake defective yeast cells and electrophysiological measurements in Xenopus oocytes
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	transporter	Identification of structural elements involved in fine-tuning of the transport activity of the rice ammonium transporter OsAMT1;3.	In this report, we demonstrate that the rice root expressed OsAMT1;3 (Oryza sativa ammonium transporter 1;3) functions as a typical high-affinity NH4(+) transporter and is weakly permeable to MeA(+) using growth assays in NH4(+) uptake defective yeast cells and electrophysiological measurements in Xenopus oocytes
OsAMT1;3|OsAMT1.3	Os02g0620500	LOC_Os02g40710	root	Three polarly localized ammonium transporter 1 members are cooperatively responsible for ammonium uptake in rice under low ammonium condition	Spatial expression analysis showed that the upregulated expression of OsAMT1;1 and OsAMT1;2 and downregulated expression of OsAMT1;3 by ammonium were higher in the root mature region than in the root tips
OsAMT2;3|OsAMT2.3	Os01g0831900	LOC_Os01g61550	nitrogen	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	, OsAMT2;3 and the high affinity OsAMT1;1 were differentially expressed and were affected by different doses of nitrogen
OsANN1	Os02g0753800	LOC_Os02g51750	growth	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	OsANN1-knockdown [RNA interference (RNAi)] plants were more sensitive to heat and drought stresses, whereas OsANN1-overexpression (OE) lines showed improved growth with higher expression of OsANN1 under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	growth	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	OsANN1 also has calcium-binding and ATPase activities in vitro, indicating that OsANN1 has multiple functions in rice growth
OsANN1	Os02g0753800	LOC_Os02g51750	ATPase	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	OsANN1 also has calcium-binding and ATPase activities in vitro, indicating that OsANN1 has multiple functions in rice growth
OsANN1	Os02g0753800	LOC_Os02g51750	drought	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	OsANN1-knockdown [RNA interference (RNAi)] plants were more sensitive to heat and drought stresses, whereas OsANN1-overexpression (OE) lines showed improved growth with higher expression of OsANN1 under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	tolerance	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Here it is reported that OsANN1 confers abiotic stress tolerance by modulating antioxidant accumulation under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	abiotic stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Here it is reported that OsANN1 confers abiotic stress tolerance by modulating antioxidant accumulation under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	abiotic stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	OsANN1-knockdown [RNA interference (RNAi)] plants were more sensitive to heat and drought stresses, whereas OsANN1-overexpression (OE) lines showed improved growth with higher expression of OsANN1 under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	abiotic stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Overexpression of OsANN1 promoted SOD (superoxide dismutase) and CAT (catalase) activities, which regulate H2O2 content and redox homeostasis, suggesting the existence of a feedback mechanism between OsANN1 and H2O2 production under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	abiotic stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Higher expression of OsANN1 can provide overall cellular protection against abiotic stress-induced damage, and a significant accumulation of OsANN1-green fluorescent protein (GFP) signals was found in the cytosol after heat shock treatment
OsANN1	Os02g0753800	LOC_Os02g51750	stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Here it is reported that OsANN1 confers abiotic stress tolerance by modulating antioxidant accumulation under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	OsANN1-knockdown [RNA interference (RNAi)] plants were more sensitive to heat and drought stresses, whereas OsANN1-overexpression (OE) lines showed improved growth with higher expression of OsANN1 under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Overexpression of OsANN1 promoted SOD (superoxide dismutase) and CAT (catalase) activities, which regulate H2O2 content and redox homeostasis, suggesting the existence of a feedback mechanism between OsANN1 and H2O2 production under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	drought stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	OsANN1-knockdown [RNA interference (RNAi)] plants were more sensitive to heat and drought stresses, whereas OsANN1-overexpression (OE) lines showed improved growth with higher expression of OsANN1 under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	stress tolerance	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Here it is reported that OsANN1 confers abiotic stress tolerance by modulating antioxidant accumulation under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	biotic stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Here it is reported that OsANN1 confers abiotic stress tolerance by modulating antioxidant accumulation under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	biotic stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	OsANN1-knockdown [RNA interference (RNAi)] plants were more sensitive to heat and drought stresses, whereas OsANN1-overexpression (OE) lines showed improved growth with higher expression of OsANN1 under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	biotic stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Overexpression of OsANN1 promoted SOD (superoxide dismutase) and CAT (catalase) activities, which regulate H2O2 content and redox homeostasis, suggesting the existence of a feedback mechanism between OsANN1 and H2O2 production under abiotic stress
OsANN1	Os02g0753800	LOC_Os02g51750	biotic stress	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	Higher expression of OsANN1 can provide overall cellular protection against abiotic stress-induced damage, and a significant accumulation of OsANN1-green fluorescent protein (GFP) signals was found in the cytosol after heat shock treatment
OsANN1	Os02g0753800	LOC_Os02g51750	resistance	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.
OsANN1	Os02g0753800	LOC_Os02g51750	disease	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.
OsANN1	Os02g0753800	LOC_Os02g51750	disease resistance	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.
OsANN1	Os02g0753800	LOC_Os02g51750	blast	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.
OsANN1	Os02g0753800	LOC_Os02g51750	jasmonic	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.
OsANN1	Os02g0753800	LOC_Os02g51750	jasmonic acid	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.
OsANN1	Os02g0753800	LOC_Os02g51750	calcium	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.
OsANN1	Os02g0753800	LOC_Os02g51750	blast disease	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.	Calcium binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.
OsANN10	Os09g0453300	LOC_Os09g27990	oxidative	A calcium-dependent lipid binding protein, OsANN10, is a negative regulator of osmotic stress tolerance in rice.	Knocking down OsANN10 significantly decreased the content of H2O2 by increasing Peroxidase (POD) and Catalase (CAT) activities, further reducing oxidative damage in rice leaves, suggesting a negative regulation of OsANN10 in protecting cell membrane against oxidative damage via scavenging ROS under osmotic stress
OsANN10	Os09g0453300	LOC_Os09g27990	stress	A calcium-dependent lipid binding protein, OsANN10, is a negative regulator of osmotic stress tolerance in rice.	Knocking down OsANN10 significantly decreased the content of H2O2 by increasing Peroxidase (POD) and Catalase (CAT) activities, further reducing oxidative damage in rice leaves, suggesting a negative regulation of OsANN10 in protecting cell membrane against oxidative damage via scavenging ROS under osmotic stress
OsANN10	Os09g0453300	LOC_Os09g27990	osmotic stress	A calcium-dependent lipid binding protein, OsANN10, is a negative regulator of osmotic stress tolerance in rice.	Knocking down OsANN10 significantly decreased the content of H2O2 by increasing Peroxidase (POD) and Catalase (CAT) activities, further reducing oxidative damage in rice leaves, suggesting a negative regulation of OsANN10 in protecting cell membrane against oxidative damage via scavenging ROS under osmotic stress
OsANN3	Os07g0659600	LOC_Os07g46550	root	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN3	Os07g0659600	LOC_Os07g46550	growth	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN3	Os07g0659600	LOC_Os07g46550	drought	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	Overexpression of OsANN3 in rice significantly increased survival rates under drought stress, while knocking down OsANN3 resulted in sensitivity to drought
OsANN3	Os07g0659600	LOC_Os07g46550	drought	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	Together with its Ca2+ and phospholipid binding activity, we proposed that when plants were subjected to drought stress, OsANN3 might mediate Ca2+ influx by binding to phospholipid to activate ABA signaling pathways
OsANN3	Os07g0659600	LOC_Os07g46550	drought	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN3	Os07g0659600	LOC_Os07g46550	ABA	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	Together with its Ca2+ and phospholipid binding activity, we proposed that when plants were subjected to drought stress, OsANN3 might mediate Ca2+ influx by binding to phospholipid to activate ABA signaling pathways
OsANN3	Os07g0659600	LOC_Os07g46550	stress	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN3	Os07g0659600	LOC_Os07g46550	abscisic acid	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	We found that expression of OsANN3 was induced by polyethylene glycol (PEG) and abscisic acid (ABA) treatments
OsANN3	Os07g0659600	LOC_Os07g46550	ABA	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	Meanwhile, OsANN3 overexpression showed enhanced sensitivity to exogenous ABA
OsANN3	Os07g0659600	LOC_Os07g46550	ABA	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	Together with its Ca2+ and phospholipid binding activity, we proposed that when plants were subjected to drought stress, OsANN3 might mediate Ca2+ influx by binding to phospholipid to activate ABA signaling pathways
OsANN3	Os07g0659600	LOC_Os07g46550	drought stress	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	Overexpression of OsANN3 in rice significantly increased survival rates under drought stress, while knocking down OsANN3 resulted in sensitivity to drought
OsANN3	Os07g0659600	LOC_Os07g46550	drought stress	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	Together with its Ca2+ and phospholipid binding activity, we proposed that when plants were subjected to drought stress, OsANN3 might mediate Ca2+ influx by binding to phospholipid to activate ABA signaling pathways
OsANN3	Os07g0659600	LOC_Os07g46550	drought stress	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN3	Os07g0659600	LOC_Os07g46550	stomata	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN3	Os07g0659600	LOC_Os07g46550	water loss	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN3	Os07g0659600	LOC_Os07g46550	drought stress	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN3	Os07g0659600	LOC_Os07g46550	stress response	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN3	Os07g0659600	LOC_Os07g46550	root length	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	In addition, overexpression OsANN3 showed better growth under drought stress comparing to wild type, such as longer root length and more stomata closure for reducing water loss by regulating ABA-dependent stress response pathways
OsANN4	Os05g0382600	LOC_Os05g31750	root	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA	Under ABA treatment, the plants in which OsANN4 was knocked down by RNA interference showed some visible phenotypic changes compared to the wild type, such as a lower rooting rate and shorter shoot and root lengths
OsANN4	Os05g0382600	LOC_Os05g31750	shoot	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA	Under ABA treatment, the plants in which OsANN4 was knocked down by RNA interference showed some visible phenotypic changes compared to the wild type, such as a lower rooting rate and shorter shoot and root lengths
OsANN4	Os05g0382600	LOC_Os05g31750	ABA	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA
OsANN4	Os05g0382600	LOC_Os05g31750	ABA	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA	Under ABA treatment, the plants in which OsANN4 was knocked down by RNA interference showed some visible phenotypic changes compared to the wild type, such as a lower rooting rate and shorter shoot and root lengths
OsANN4	Os05g0382600	LOC_Os05g31750	ABA	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA	Conclusions: OsANN4 plays a crucial role in the ABA response, partially by modulating ROS production, mediating Ca2+ influx or interacting with OsCDPK24
OsANN4	Os05g0382600	LOC_Os05g31750	ABA	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA
OsANN4	Os05g0382600	LOC_Os05g31750	ABA	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA	Under ABA treatment, the plants in which OsANN4 was knocked down by RNA interference showed some visible phenotypic changes compared to the wild type, such as a lower rooting rate and shorter shoot and root lengths
OsANN4	Os05g0382600	LOC_Os05g31750	ABA	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA	Conclusions: OsANN4 plays a crucial role in the ABA response, partially by modulating ROS production, mediating Ca2+ influx or interacting with OsCDPK24
OsANN4	Os05g0382600	LOC_Os05g31750	root length	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA	Under ABA treatment, the plants in which OsANN4 was knocked down by RNA interference showed some visible phenotypic changes compared to the wild type, such as a lower rooting rate and shorter shoot and root lengths
OsAns	Os01g0372500	LOC_Os01g27490	salt	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB	indica) seedlings under dehydration stress or high salt or abscisic acid (ABA) showed a significant enhancement of transcript level and/or transcript stability of OsDfr and OsAns
OsAns	Os01g0372500	LOC_Os01g27490	salt	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB
OsAns	Os01g0372500	LOC_Os01g27490	seedling	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB	indica) seedlings under dehydration stress or high salt or abscisic acid (ABA) showed a significant enhancement of transcript level and/or transcript stability of OsDfr and OsAns
OsAns	Os01g0372500	LOC_Os01g27490	transcription factor	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB	The expression pattern of these three genes indicates that the stress responsive accumulation of OsDfr and OsAns transcripts is mediated by the transcription factor, OsC1-MYB
OsANTH3	Os02g0175700	LOC_Os02g07900	fertility	Global Identification of ANTH Genes Involved in Rice Pollen Germination and Functional Characterization of a Key Member, OsANTH3	Functional characterization of OsANTH3 using T-DNA insertional knockout and gene-edited mutants revealed that a mutation in OsANTH3 decreased seed fertility by reducing the pollen germination percentage in rice
OsANTH3	Os02g0175700	LOC_Os02g07900	pollen	Global Identification of ANTH Genes Involved in Rice Pollen Germination and Functional Characterization of a Key Member, OsANTH3	Global Identification of ANTH Genes Involved in Rice Pollen Germination and Functional Characterization of a Key Member, OsANTH3
OsANTH3	Os02g0175700	LOC_Os02g07900	pollen	Global Identification of ANTH Genes Involved in Rice Pollen Germination and Functional Characterization of a Key Member, OsANTH3	Of them, OsANTH3 represented the highest expression in mature pollen
OsANTH3	Os02g0175700	LOC_Os02g07900	pollen	Global Identification of ANTH Genes Involved in Rice Pollen Germination and Functional Characterization of a Key Member, OsANTH3	Functional characterization of OsANTH3 using T-DNA insertional knockout and gene-edited mutants revealed that a mutation in OsANTH3 decreased seed fertility by reducing the pollen germination percentage in rice
OsANTH3	Os02g0175700	LOC_Os02g07900	seed	Global Identification of ANTH Genes Involved in Rice Pollen Germination and Functional Characterization of a Key Member, OsANTH3	Functional characterization of OsANTH3 using T-DNA insertional knockout and gene-edited mutants revealed that a mutation in OsANTH3 decreased seed fertility by reducing the pollen germination percentage in rice
OsAO3	Os07g0281700	LOC_Os07g18120	fertility	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 increased and decreased grain yield, respectively, by affecting panicle number per plant, spikelet number per panicle, and spikelet fertility
OsAO3	Os07g0281700	LOC_Os07g18120	panicle	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 increased and decreased grain yield, respectively, by affecting panicle number per plant, spikelet number per panicle, and spikelet fertility
OsAO3	Os07g0281700	LOC_Os07g18120	spikelet	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 increased and decreased grain yield, respectively, by affecting panicle number per plant, spikelet number per panicle, and spikelet fertility
OsAO3	Os07g0281700	LOC_Os07g18120	grain	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.
OsAO3	Os07g0281700	LOC_Os07g18120	grain	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 increased and decreased grain yield, respectively, by affecting panicle number per plant, spikelet number per panicle, and spikelet fertility
OsAO3	Os07g0281700	LOC_Os07g18120	grain	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	seedling	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 decreased and increased ABA levels, respectively, in seedling shoots and roots under both normal and drought stress conditions
OsAO3	Os07g0281700	LOC_Os07g18120	seedling	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The osao3 mutant exhibited earlier seed germination, increased seedling growth, and decreased drought tolerance compared to the wild-type, OsAO3-overexpressing lines exhibited the opposite phenotype
OsAO3	Os07g0281700	LOC_Os07g18120	seedling	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	seed	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The osao3 mutant exhibited earlier seed germination, increased seedling growth, and decreased drought tolerance compared to the wild-type, OsAO3-overexpressing lines exhibited the opposite phenotype
OsAO3	Os07g0281700	LOC_Os07g18120	seed	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	drought	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.
OsAO3	Os07g0281700	LOC_Os07g18120	drought	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 decreased and increased ABA levels, respectively, in seedling shoots and roots under both normal and drought stress conditions
OsAO3	Os07g0281700	LOC_Os07g18120	drought	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The osao3 mutant exhibited earlier seed germination, increased seedling growth, and decreased drought tolerance compared to the wild-type, OsAO3-overexpressing lines exhibited the opposite phenotype
OsAO3	Os07g0281700	LOC_Os07g18120	drought	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	seed germination	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The osao3 mutant exhibited earlier seed germination, increased seedling growth, and decreased drought tolerance compared to the wild-type, OsAO3-overexpressing lines exhibited the opposite phenotype
OsAO3	Os07g0281700	LOC_Os07g18120	seed germination	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	tolerance	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.
OsAO3	Os07g0281700	LOC_Os07g18120	tolerance	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The osao3 mutant exhibited earlier seed germination, increased seedling growth, and decreased drought tolerance compared to the wild-type, OsAO3-overexpressing lines exhibited the opposite phenotype
OsAO3	Os07g0281700	LOC_Os07g18120	tolerance	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	grain yield	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.
OsAO3	Os07g0281700	LOC_Os07g18120	grain yield	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 increased and decreased grain yield, respectively, by affecting panicle number per plant, spikelet number per panicle, and spikelet fertility
OsAO3	Os07g0281700	LOC_Os07g18120	grain yield	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	ABA	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.
OsAO3	Os07g0281700	LOC_Os07g18120	ABA	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	OsAO3 was expressed in germinated seeds, roots, leaves, and floral organs, particularly in vascular tissues and guard cells, and its expression was significantly induced by exogenous ABA and mannitol
OsAO3	Os07g0281700	LOC_Os07g18120	ABA	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 decreased and increased ABA levels, respectively, in seedling shoots and roots under both normal and drought stress conditions
OsAO3	Os07g0281700	LOC_Os07g18120	ABA	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	drought tolerance	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.
OsAO3	Os07g0281700	LOC_Os07g18120	drought tolerance	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The osao3 mutant exhibited earlier seed germination, increased seedling growth, and decreased drought tolerance compared to the wild-type, OsAO3-overexpressing lines exhibited the opposite phenotype
OsAO3	Os07g0281700	LOC_Os07g18120	drought tolerance	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	stress	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 decreased and increased ABA levels, respectively, in seedling shoots and roots under both normal and drought stress conditions
OsAO3	Os07g0281700	LOC_Os07g18120	floral	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	OsAO3 was expressed in germinated seeds, roots, leaves, and floral organs, particularly in vascular tissues and guard cells, and its expression was significantly induced by exogenous ABA and mannitol
OsAO3	Os07g0281700	LOC_Os07g18120	spikelet number	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 increased and decreased grain yield, respectively, by affecting panicle number per plant, spikelet number per panicle, and spikelet fertility
OsAO3	Os07g0281700	LOC_Os07g18120	plant growth	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.
OsAO3	Os07g0281700	LOC_Os07g18120	floral organ	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	OsAO3 was expressed in germinated seeds, roots, leaves, and floral organs, particularly in vascular tissues and guard cells, and its expression was significantly induced by exogenous ABA and mannitol
OsAO3	Os07g0281700	LOC_Os07g18120	ABA	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.
OsAO3	Os07g0281700	LOC_Os07g18120	ABA	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	OsAO3 was expressed in germinated seeds, roots, leaves, and floral organs, particularly in vascular tissues and guard cells, and its expression was significantly induced by exogenous ABA and mannitol
OsAO3	Os07g0281700	LOC_Os07g18120	ABA	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 decreased and increased ABA levels, respectively, in seedling shoots and roots under both normal and drought stress conditions
OsAO3	Os07g0281700	LOC_Os07g18120	ABA	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	drought stress	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 decreased and increased ABA levels, respectively, in seedling shoots and roots under both normal and drought stress conditions
OsAO3	Os07g0281700	LOC_Os07g18120	drought stress	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Mutation and overexpression of OsAO3 decreased and increased ABA levels, respectively, in seedling shoots and roots under both normal and drought stress conditions
OsAO3	Os07g0281700	LOC_Os07g18120	seedling growth	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The osao3 mutant exhibited earlier seed germination, increased seedling growth, and decreased drought tolerance compared to the wild-type, OsAO3-overexpressing lines exhibited the opposite phenotype
OsAO3	Os07g0281700	LOC_Os07g18120	seedling growth	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO3	Os07g0281700	LOC_Os07g18120	ABA biosynthesis	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.
OsAO3	Os07g0281700	LOC_Os07g18120	ABA biosynthesis	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Thus, OsAO3 may participate in ABA biosynthesis, and is essential for regulation of seed germination, seedling growth, grain yield, and drought tolerance in rice
OsAO4	Os09g0507300	LOC_Os09g32952	immunity	Co-evolved ascorbate oxidases of plant and the blast fungus orchestrate host apoplast redox state to modulate rice immunity.	 In addition, we found that MoAo1, OsAO3, and OsAO4 all undergo polymorphic variations whose varied interactions orchestrate pathogen virulence and rice immunity
OsAO4	Os09g0507300	LOC_Os09g32952	pathogen	Co-evolved ascorbate oxidases of plant and the blast fungus orchestrate host apoplast redox state to modulate rice immunity.	 In addition, we found that MoAo1, OsAO3, and OsAO4 all undergo polymorphic variations whose varied interactions orchestrate pathogen virulence and rice immunity
OsAOC|OsAOC1	Os03g0438100	LOC_Os03g32314	jasmonic acid	Identification of rice Allene Oxide Cyclase mutants and the function of jasmonate for defence against Magnaporthe oryzae	Examination of the enzymatic activity of recombinant GST-OsAOC indicated that OsAOC is a functional enzyme that is involved in the biosynthesis of jasmonic acid and related compounds
OsAOC|OsAOC1	Os03g0438100	LOC_Os03g32314	jasmonic	Identification of rice Allene Oxide Cyclase mutants and the function of jasmonate for defence against Magnaporthe oryzae	Examination of the enzymatic activity of recombinant GST-OsAOC indicated that OsAOC is a functional enzyme that is involved in the biosynthesis of jasmonic acid and related compounds
OsAOC|OsAOC1	Os03g0438100	LOC_Os03g32314	jasmonic	Jasmonic acid deficiency leads to scattered floret opening time in cytoplasmic male sterile rice Zhenshan 97A.	 Further, the retardation in accumulation of ORSs and water were caused by jasmonic acid (JA) deficiency, resulting from down-regulation of OsAOC expression
OsAOC|OsAOC1	Os03g0438100	LOC_Os03g32314	jasmonic acid	Jasmonic acid deficiency leads to scattered floret opening time in cytoplasmic male sterile rice Zhenshan 97A.	 Further, the retardation in accumulation of ORSs and water were caused by jasmonic acid (JA) deficiency, resulting from down-regulation of OsAOC expression
OsAOC|OsAOC1	Os03g0438100	LOC_Os03g32314	jasmonate	CRISPR/Cas9-Mediated Gene Editing of the Jasmonate Biosynthesis OsAOC Gene in Rice.	CRISPR/Cas9-Mediated Gene Editing of the Jasmonate Biosynthesis OsAOC Gene in Rice.
OsAOS1	Os03g0767000	LOC_Os03g55800	seedling	Phytochrome-mediated transcriptional up-regulation of ALLENE OXIDE SYNTHASE in rice seedlings	We found that the transcripts of OsAOS1 and OsAOS4 are up-regulated by red and far-red light in seedling shoots
OsAOS1	Os03g0767000	LOC_Os03g55800	seedling	Phytochrome-mediated transcriptional up-regulation of ALLENE OXIDE SYNTHASE in rice seedlings	Our results also indicated that OsAOS1, responding to both light and wounding, is the most highly expressed of all the OsAOSs in seedling shoots
OsAOS1	Os03g0767000	LOC_Os03g55800	ja	OsMPK3 positively regulates the JA signaling pathway and plant resistance to a chewing herbivore in rice	Silencing OsMPK3 (ir-mpk3) reduced the expression of the gene by 50-70 %, decreased elicited levels of JA and diminished the expression of a lipoxygenase gene OsHI-LOX and an allene oxide synthase gene OsAOS1
OsAOS1	Os03g0767000	LOC_Os03g55800	chloroplast	Phytochrome-mediated transcriptional up-regulation of ALLENE OXIDE SYNTHASE in rice seedlings	The analysis of deduced amino acid sequences indicated that only OsAOS1 has a chloroplast transit peptide among all the identified monocot AOSs including OsAOSs
OsAOS1	Os03g0767000	LOC_Os03g55800	shoot	Phytochrome-mediated transcriptional up-regulation of ALLENE OXIDE SYNTHASE in rice seedlings	We found that the transcripts of OsAOS1 and OsAOS4 are up-regulated by red and far-red light in seedling shoots
OsAOS1	Os03g0767000	LOC_Os03g55800	shoot	Phytochrome-mediated transcriptional up-regulation of ALLENE OXIDE SYNTHASE in rice seedlings	Our results also indicated that OsAOS1, responding to both light and wounding, is the most highly expressed of all the OsAOSs in seedling shoots
OsAOS1	Os03g0767000	LOC_Os03g55800	stem	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	We cloned the two rice AOS genes and observed that the transcript level of both OsAOS1 and OsAOS2 was enhanced by mechanical wounding, the infestation of the striped stem borer (SSB) (Chilo suppressalis) or brown planthopper (BPH) (Niaparvata lugens), and treatment with JA; however, OsAOS1 responded more rapidly to SSB infestation and JA treatment than did OsAOS2
OsAOS1	Os03g0767000	LOC_Os03g55800	resistance	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	The antisense expression of OsAOS1 (as-aos1) or OsAOS2 (as-aos2) decreased levels of SSB- or BPH-induced JA, which, in turn, reduced the production of SSB-induced trypsin protease inhibitor (TrypPI) and volatiles as well as the resistance of rice to SSB
OsAOS1	Os03g0767000	LOC_Os03g55800	resistance	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	These results indicate that OsAOS1 and OsAOS2 are both involved in herbivore-induced JA biosynthesis and play a vital role in determining the resistance of rice to chewing and phloem-feeding herbivores
OsAOS1	Os03g0767000	LOC_Os03g55800	ja	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	We cloned the two rice AOS genes and observed that the transcript level of both OsAOS1 and OsAOS2 was enhanced by mechanical wounding, the infestation of the striped stem borer (SSB) (Chilo suppressalis) or brown planthopper (BPH) (Niaparvata lugens), and treatment with JA; however, OsAOS1 responded more rapidly to SSB infestation and JA treatment than did OsAOS2
OsAOS1	Os03g0767000	LOC_Os03g55800	ja	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	These results indicate that OsAOS1 and OsAOS2 are both involved in herbivore-induced JA biosynthesis and play a vital role in determining the resistance of rice to chewing and phloem-feeding herbivores
OsAOS1	Os03g0767000	LOC_Os03g55800	JA	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	We cloned the two rice AOS genes and observed that the transcript level of both OsAOS1 and OsAOS2 was enhanced by mechanical wounding, the infestation of the striped stem borer (SSB) (Chilo suppressalis) or brown planthopper (BPH) (Niaparvata lugens), and treatment with JA; however, OsAOS1 responded more rapidly to SSB infestation and JA treatment than did OsAOS2
OsAOS1	Os03g0767000	LOC_Os03g55800	JA	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	These results indicate that OsAOS1 and OsAOS2 are both involved in herbivore-induced JA biosynthesis and play a vital role in determining the resistance of rice to chewing and phloem-feeding herbivores
OsAOS1	Os03g0767000	LOC_Os03g55800	brown planthopper	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	We cloned the two rice AOS genes and observed that the transcript level of both OsAOS1 and OsAOS2 was enhanced by mechanical wounding, the infestation of the striped stem borer (SSB) (Chilo suppressalis) or brown planthopper (BPH) (Niaparvata lugens), and treatment with JA; however, OsAOS1 responded more rapidly to SSB infestation and JA treatment than did OsAOS2
OsAOS1	Os03g0767000	LOC_Os03g55800	JA biosynthesis	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	These results indicate that OsAOS1 and OsAOS2 are both involved in herbivore-induced JA biosynthesis and play a vital role in determining the resistance of rice to chewing and phloem-feeding herbivores
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	ja	Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection	Furthermore, we have characterized a pathogen-inducible rice OsAOS2 gene (which encodes allene oxide synthase, a key enzyme in the JA biosynthetic pathway) and examined the role of endogenous JA in rice defense response through transgenic manipulation of the JA biosynthesis
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	defense	Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection	Furthermore, we have characterized a pathogen-inducible rice OsAOS2 gene (which encodes allene oxide synthase, a key enzyme in the JA biosynthetic pathway) and examined the role of endogenous JA in rice defense response through transgenic manipulation of the JA biosynthesis
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	chloroplast	Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection	Sequence analysis indicated that OsAOS2 contains four common domains of the cytochrome P450 enzyme, but does not have the signal peptide for chloroplast targeting
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	defense response	Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection	Furthermore, we have characterized a pathogen-inducible rice OsAOS2 gene (which encodes allene oxide synthase, a key enzyme in the JA biosynthetic pathway) and examined the role of endogenous JA in rice defense response through transgenic manipulation of the JA biosynthesis
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	culm	Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection	The basal level of OsAOS2 expression is very low in leaves but relatively high in the sheath, culm, and flower of rice plants
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	flower	Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection	The basal level of OsAOS2 expression is very low in leaves but relatively high in the sheath, culm, and flower of rice plants
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	sheath	Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection	The basal level of OsAOS2 expression is very low in leaves but relatively high in the sheath, culm, and flower of rice plants
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	stem	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	We cloned the two rice AOS genes and observed that the transcript level of both OsAOS1 and OsAOS2 was enhanced by mechanical wounding, the infestation of the striped stem borer (SSB) (Chilo suppressalis) or brown planthopper (BPH) (Niaparvata lugens), and treatment with JA; however, OsAOS1 responded more rapidly to SSB infestation and JA treatment than did OsAOS2
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	resistance	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	The antisense expression of OsAOS1 (as-aos1) or OsAOS2 (as-aos2) decreased levels of SSB- or BPH-induced JA, which, in turn, reduced the production of SSB-induced trypsin protease inhibitor (TrypPI) and volatiles as well as the resistance of rice to SSB
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	resistance	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	These results indicate that OsAOS1 and OsAOS2 are both involved in herbivore-induced JA biosynthesis and play a vital role in determining the resistance of rice to chewing and phloem-feeding herbivores
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	ja	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	We cloned the two rice AOS genes and observed that the transcript level of both OsAOS1 and OsAOS2 was enhanced by mechanical wounding, the infestation of the striped stem borer (SSB) (Chilo suppressalis) or brown planthopper (BPH) (Niaparvata lugens), and treatment with JA; however, OsAOS1 responded more rapidly to SSB infestation and JA treatment than did OsAOS2
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	ja	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	These results indicate that OsAOS1 and OsAOS2 are both involved in herbivore-induced JA biosynthesis and play a vital role in determining the resistance of rice to chewing and phloem-feeding herbivores
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	JA	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	We cloned the two rice AOS genes and observed that the transcript level of both OsAOS1 and OsAOS2 was enhanced by mechanical wounding, the infestation of the striped stem borer (SSB) (Chilo suppressalis) or brown planthopper (BPH) (Niaparvata lugens), and treatment with JA; however, OsAOS1 responded more rapidly to SSB infestation and JA treatment than did OsAOS2
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	JA	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	These results indicate that OsAOS1 and OsAOS2 are both involved in herbivore-induced JA biosynthesis and play a vital role in determining the resistance of rice to chewing and phloem-feeding herbivores
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	brown planthopper	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	We cloned the two rice AOS genes and observed that the transcript level of both OsAOS1 and OsAOS2 was enhanced by mechanical wounding, the infestation of the striped stem borer (SSB) (Chilo suppressalis) or brown planthopper (BPH) (Niaparvata lugens), and treatment with JA; however, OsAOS1 responded more rapidly to SSB infestation and JA treatment than did OsAOS2
OsAOS2|AOS	Os03g0225900	LOC_Os03g12500	JA biosynthesis	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice	These results indicate that OsAOS1 and OsAOS2 are both involved in herbivore-induced JA biosynthesis and play a vital role in determining the resistance of rice to chewing and phloem-feeding herbivores
OsAOS3|OsHPL2	Os02g0218700	LOC_Os02g12680	leaf	Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis	OsHPL1 is ubiquitously expressed, OsHPL2 is expressed in the leaves and leaf sheaths, whereas OsHPL3 is wound inducible and expressed exclusively in leaves
OsAOS3|OsHPL2	Os02g0218700	LOC_Os02g12680	sheath	Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis	OsHPL1 is ubiquitously expressed, OsHPL2 is expressed in the leaves and leaf sheaths, whereas OsHPL3 is wound inducible and expressed exclusively in leaves
OsAOS3|OsHPL2	Os02g0218700	LOC_Os02g12680	blight	Role of hydroperoxide lyase in white-backed planthopper (Sogatella furcifera Horvath)-induced resistance to bacterial blight in rice, Oryza sativa L	OsHPL2-overexpressing transgenic rice plants exhibited increased resistance to bacterial blight
OsAOS3|OsHPL2	Os02g0218700	LOC_Os02g12680	bacterial blight	Role of hydroperoxide lyase in white-backed planthopper (Sogatella furcifera Horvath)-induced resistance to bacterial blight in rice, Oryza sativa L	OsHPL2-overexpressing transgenic rice plants exhibited increased resistance to bacterial blight
OsAOS4|OsHPL1	Os02g0218800	LOC_Os02g12690	seedling	Phytochrome-mediated transcriptional up-regulation of ALLENE OXIDE SYNTHASE in rice seedlings	We found that the transcripts of OsAOS1 and OsAOS4 are up-regulated by red and far-red light in seedling shoots
OsAOS4|OsHPL1	Os02g0218800	LOC_Os02g12690	shoot	Phytochrome-mediated transcriptional up-regulation of ALLENE OXIDE SYNTHASE in rice seedlings	We found that the transcripts of OsAOS1 and OsAOS4 are up-regulated by red and far-red light in seedling shoots
OsAOS4|OsHPL1	Os02g0218800	LOC_Os02g12690	root	Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis	Similarly, there were undetectable levels of aldehydes in rice roots, in spite of the presence of OsHPL1 transcripts
OsAOS4|OsHPL1	Os02g0218800	LOC_Os02g12690	sheath	Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis	OsHPL1 is ubiquitously expressed, OsHPL2 is expressed in the leaves and leaf sheaths, whereas OsHPL3 is wound inducible and expressed exclusively in leaves
OsAOS4|OsHPL1	Os02g0218800	LOC_Os02g12690	leaf	Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis	OsHPL1 is ubiquitously expressed, OsHPL2 is expressed in the leaves and leaf sheaths, whereas OsHPL3 is wound inducible and expressed exclusively in leaves
OsAOX1b	Os04g0600300	LOC_Os04g51160	abiotic stress	Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes	In this study, we analysed the early abiotic stress response of the rice OsAOX1 genes, and the induction of OsAOX1a and OsAOX1b (OsAOX1a/b) was selected as a working model for the stress-induced MRR studies
OsAP2-39	Os04g0610400	LOC_Os04g52090	biomass	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	Overexpression of OsAP2-39 leads to a reduction in yield by decreasing the biomass and the number of seeds in the transgenic rice lines
OsAP2-39	Os04g0610400	LOC_Os04g52090	drought	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice
OsAP2-39	Os04g0610400	LOC_Os04g52090	seed	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	Overexpression of OsAP2-39 leads to a reduction in yield by decreasing the biomass and the number of seeds in the transgenic rice lines
OsAP2-39	Os04g0610400	LOC_Os04g52090	seed	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	Together, these results reveal a novel mechanism for the control of the ABA/GA balance in rice which is regulated by OsAP2-39 that in turn regulates plant growth and seed production
OsAP2-39	Os04g0610400	LOC_Os04g52090	ethylene	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Moreover, overexpression of OsERF3/OsAP2-39 suppressed ethylene synthesis
OsAP2-39	Os04g0610400	LOC_Os04g52090	ethylene	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice
OsAP2-39	Os04g0610400	LOC_Os04g52090	transcription factor	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice
OsAP2-39	Os04g0610400	LOC_Os04g52090	yield	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	Overexpression of OsAP2-39 leads to a reduction in yield by decreasing the biomass and the number of seeds in the transgenic rice lines
OsAP2-39	Os04g0610400	LOC_Os04g52090	 ABA 	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	Global transcriptome analysis of the OsAP2-39 overexpression transgenic rice revealed the upregulation of a key Abscisic Acid (ABA) biosynthetic gene OsNCED-I which codes for 9-cis-epoxycarotenoid dioxygenase and leads to an increase in the endogenous ABA level
OsAP2-39	Os04g0610400	LOC_Os04g52090	 ABA 	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	The exogenous application of GA restores the wild-type phenotype in the transgenic line and ABA application induces the expression of EUI and suppresses the expression of OsAP2-39 in the wild-type line
OsAP2-39	Os04g0610400	LOC_Os04g52090	 ga 	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	The exogenous application of GA restores the wild-type phenotype in the transgenic line and ABA application induces the expression of EUI and suppresses the expression of OsAP2-39 in the wild-type line
OsAP2-39	Os04g0610400	LOC_Os04g52090	growth	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	Together, these results reveal a novel mechanism for the control of the ABA/GA balance in rice which is regulated by OsAP2-39 that in turn regulates plant growth and seed production
OsAP2-39	Os04g0610400	LOC_Os04g52090	drought tolerance	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice
OsAP2-39	Os04g0610400	LOC_Os04g52090	gibberellin	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice	The APETALA-2-Like Transcription Factor OsAP2-39 Controls Key Interactions between Abscisic Acid and Gibberellin in Rice
OsAP2-39	Os04g0610400	LOC_Os04g52090	transcription factor	APETALA 2-domain-containing transcription factors: focusing on abscisic acid and gibberellins antagonism.	 Emerging evidence indicates that two APETALA 2 (AP2)-domain-containing transcription factors (ATFs), ABI4 in Arabidopsis and OsAP2-39 in rice, play key roles in ABA and GA antagonism
OsAP2-39	Os04g0610400	LOC_Os04g52090	 ABA 	APETALA 2-domain-containing transcription factors: focusing on abscisic acid and gibberellins antagonism.	 Emerging evidence indicates that two APETALA 2 (AP2)-domain-containing transcription factors (ATFs), ABI4 in Arabidopsis and OsAP2-39 in rice, play key roles in ABA and GA antagonism
OsAP2-39	Os04g0610400	LOC_Os04g52090	 ga 	APETALA 2-domain-containing transcription factors: focusing on abscisic acid and gibberellins antagonism.	 Emerging evidence indicates that two APETALA 2 (AP2)-domain-containing transcription factors (ATFs), ABI4 in Arabidopsis and OsAP2-39 in rice, play key roles in ABA and GA antagonism
OsAP2-39	Os04g0610400	LOC_Os04g52090	GA	APETALA 2-domain-containing transcription factors: focusing on abscisic acid and gibberellins antagonism.	 Emerging evidence indicates that two APETALA 2 (AP2)-domain-containing transcription factors (ATFs), ABI4 in Arabidopsis and OsAP2-39 in rice, play key roles in ABA and GA antagonism
OsAP2-39	Os04g0610400	LOC_Os04g52090	ABA	APETALA 2-domain-containing transcription factors: focusing on abscisic acid and gibberellins antagonism.	 Emerging evidence indicates that two APETALA 2 (AP2)-domain-containing transcription factors (ATFs), ABI4 in Arabidopsis and OsAP2-39 in rice, play key roles in ABA and GA antagonism
OsAP2-39	Os04g0610400	LOC_Os04g52090	 ABA 	Multiple areas investigation reveals the genes related to vascular bundles in rice.	 The double mutant for the DEP1 and AP2-like genes (OsAP2-39) showed decreased endogenous abscisic acid (ABA) level and insensitivity to exogenous ABA treatment, confirming that both DEP1 and OsAP2-39 are involved in the ABA response mechanism
OsAP2-39	Os04g0610400	LOC_Os04g52090	ABA	Multiple areas investigation reveals the genes related to vascular bundles in rice.	 The double mutant for the DEP1 and AP2-like genes (OsAP2-39) showed decreased endogenous abscisic acid (ABA) level and insensitivity to exogenous ABA treatment, confirming that both DEP1 and OsAP2-39 are involved in the ABA response mechanism
OsAP2-39	Os04g0610400	LOC_Os04g52090	abscisic acid	Multiple areas investigation reveals the genes related to vascular bundles in rice.	 The double mutant for the DEP1 and AP2-like genes (OsAP2-39) showed decreased endogenous abscisic acid (ABA) level and insensitivity to exogenous ABA treatment, confirming that both DEP1 and OsAP2-39 are involved in the ABA response mechanism
OsAP2-39	Os04g0610400	LOC_Os04g52090	growth	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsAP2-39	Os04g0610400	LOC_Os04g52090	development	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsAP2-39	Os04g0610400	LOC_Os04g52090	nucleus	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 OsDREB2B localized to the nucleus of the rice protoplast acted as a transcription activator and upregulated OsAP2-39 by directly binding to its promoter
OsAP2-39	Os04g0610400	LOC_Os04g52090	ga	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsAP2-39	Os04g0610400	LOC_Os04g52090	 ga 	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsAP2-39	Os04g0610400	LOC_Os04g52090	height	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsAP2-39	Os04g0610400	LOC_Os04g52090	plant height	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsAP2-39	Os04g0610400	LOC_Os04g52090	GA	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsAP2-39	Os04g0610400	LOC_Os04g52090	transcription activator	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 OsDREB2B localized to the nucleus of the rice protoplast acted as a transcription activator and upregulated OsAP2-39 by directly binding to its promoter
OsAP23	Os03g0150200	LOC_Os03g05590	transcription factor	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	In this study, the rice OsAP23 gene, which encodes an AP2/ERF transcription factor, was isolated from rice using a yeast-one-hybrid system
OsAP23	Os03g0150200	LOC_Os03g05590	transcription factor	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	The OsAP23 transcription factor belongs to the B3 group of the ERF subfamily
OsAP23	Os03g0150200	LOC_Os03g05590	seedling	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	Germination results for transgenic Arabidopsis plants hosting the OsAP23 gene revealed greater inhibition at the germination and seedling stages with increasing concentration of NaCl compared to the wild-type plants
OsAP23	Os03g0150200	LOC_Os03g05590	salt	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	In addition, following exposure to high salt concentrations, several stress-responsive regulatory genes were induced to a significantly greater extent in the wild-type lines compared with lines that over-express OsAP23
OsAP23	Os03g0150200	LOC_Os03g05590	salt	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	These results suggested that OsAP23 might be a negative regulator of the salt stress response in higher plants
OsAP23	Os03g0150200	LOC_Os03g05590	ABA	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	Exogenous ABA also reduced the rate of germination of transgenic Arabidopsis seeds that over-express OsAP23 compared with wild-type Arabidopsis seeds
OsAP23	Os03g0150200	LOC_Os03g05590	salt stress	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	These results suggested that OsAP23 might be a negative regulator of the salt stress response in higher plants
OsAP23	Os03g0150200	LOC_Os03g05590	stress	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	These results suggested that OsAP23 might be a negative regulator of the salt stress response in higher plants
OsAP23	Os03g0150200	LOC_Os03g05590	ABA	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	Exogenous ABA also reduced the rate of germination of transgenic Arabidopsis seeds that over-express OsAP23 compared with wild-type Arabidopsis seeds
OsAP23	Os03g0150200	LOC_Os03g05590	stress response	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	These results suggested that OsAP23 might be a negative regulator of the salt stress response in higher plants
OsAP25	Os03g0186900	LOC_Os03g08790	cell death	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	ETERNAL TAPETUM 1 directly regulates the expression of OsAP25 and OsAP37, which encode aspartic proteases that induce programmed cell death in both yeast and plants
OsAP25	Os03g0186900	LOC_Os03g08790	transcription factor	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L	Using a yeast one-hybrid method, a transcription factor, OsAP25, which interacts specifically with a GCC box was isolated from rice
OsAP25	Os03g0186900	LOC_Os03g08790	transcription factor	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L
OsAP25	Os03g0186900	LOC_Os03g08790	flower	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L	The semi-quantitative RT-PCR analysis revealed that OsAP25 gene was constitutively expressed in leaves, roots, growing points, flower, bolting stage and grain filling stage
OsAP25	Os03g0186900	LOC_Os03g08790	drought	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L	In addition, OsAP25 gene was induced by NaCl, cold, drought, abscisic acid and exogenous ethylene
OsAP25	Os03g0186900	LOC_Os03g08790	root	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L	The semi-quantitative RT-PCR analysis revealed that OsAP25 gene was constitutively expressed in leaves, roots, growing points, flower, bolting stage and grain filling stage
OsAP25	Os03g0186900	LOC_Os03g08790	grain filling	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L	The semi-quantitative RT-PCR analysis revealed that OsAP25 gene was constitutively expressed in leaves, roots, growing points, flower, bolting stage and grain filling stage
OsAP25	Os03g0186900	LOC_Os03g08790	grain	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L	The semi-quantitative RT-PCR analysis revealed that OsAP25 gene was constitutively expressed in leaves, roots, growing points, flower, bolting stage and grain filling stage
OsAP25	Os03g0186900	LOC_Os03g08790	tapetum	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	ETERNAL TAPETUM 1 directly regulates the expression of OsAP25 and OsAP37, which encode aspartic proteases that induce programmed cell death in both yeast and plants
OsAP25	Os03g0186900	LOC_Os03g08790	ethylene	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L	The OsAP25 protein contained a conserved ethylene-responsive element binding factor (ERF) domain which shared identity with other reported ERF domains
OsAP25	Os03g0186900	LOC_Os03g08790	ethylene	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L	In addition, OsAP25 gene was induced by NaCl, cold, drought, abscisic acid and exogenous ethylene
OsAP37	Os04g0448500	LOC_Os04g37570	cell death	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	ETERNAL TAPETUM 1 directly regulates the expression of OsAP25 and OsAP37, which encode aspartic proteases that induce programmed cell death in both yeast and plants
OsAP37	Os04g0448500	LOC_Os04g37570	tapetum	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice	ETERNAL TAPETUM 1 directly regulates the expression of OsAP25 and OsAP37, which encode aspartic proteases that induce programmed cell death in both yeast and plants
OsAP37	Os04g0448500	LOC_Os04g37570	cell death	OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.	OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.
OsAP37	Os04g0448500	LOC_Os04g37570	PCD	Variations in OsSPL10 confer drought tolerance by directly regulating OsNAC2 expression and ROS production in rice.	 Importantly, we demonstrated that the varieties with the OsSPL10 (Hap1) allele show low expression levels of OsSPL10 and its downstream gene, OsNAC2, which decreases the expression of OsAP37 and increases the expression of OsCOX11, thus preventing ROS accumulation and PCD
OsAP65	Os07g0592200	LOC_Os07g40260	pollen	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth	Here, the identification and characterization of a novel AP gene, OsAP65, which plays an indispensable role in pollen tube growth in rice, is reported
OsAP65	Os07g0592200	LOC_Os07g40260	pollen	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth	These results indicated that OsAP65 was essential for rice pollen germination and tube growth
OsAP65	Os07g0592200	LOC_Os07g40260	pollen	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth
OsAP65	Os07g0592200	LOC_Os07g40260	fertility	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth
OsAP65	Os07g0592200	LOC_Os07g40260	growth	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth	Here, the identification and characterization of a novel AP gene, OsAP65, which plays an indispensable role in pollen tube growth in rice, is reported
OsAP65	Os07g0592200	LOC_Os07g40260	growth	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth	These results indicated that OsAP65 was essential for rice pollen germination and tube growth
OsAP65	Os07g0592200	LOC_Os07g40260	growth	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth
OsAP77	Os10g0537800	LOC_Os10g39260	defense	Response of an aspartic protease gene OsAP77 to fungal, bacterial and viral infections in rice.	These results suggest that the expression of OsAP77 is induced by pathogen infection and defense related signaling molecules in a vascular tissue specific manner and that this gene has a positive role of defense response against fungal, bacterial and viral infections
OsAP77	Os10g0537800	LOC_Os10g39260	defense response	Response of an aspartic protease gene OsAP77 to fungal, bacterial and viral infections in rice.	These results suggest that the expression of OsAP77 is induced by pathogen infection and defense related signaling molecules in a vascular tissue specific manner and that this gene has a positive role of defense response against fungal, bacterial and viral infections
OsAP77	Os10g0537800	LOC_Os10g39260	ABA	Response of an aspartic protease gene OsAP77 to fungal, bacterial and viral infections in rice.	RT-PCR analysis showed that OsAP77 was induced not only by infection with these pathogens, but also after treatment with SA, INA, H2O2 or ABA
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	seed	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6	A T-DNA insertional mutant OsAPC6 of rice, with gibberellic acid insensitivity and reduced height, had up to 45% reduced seed set
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	seed	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6	Confocal laser scanning microscopic (CLSM) studies of megagametophyte development showed abnormal mitotic divisions with reduced number or total absence of polar nuclei in about 30-35% megagametophytes of OsAPC6 mutant leading to failure of endosperm and hence embryo and seed development
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	endosperm	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6	Confocal laser scanning microscopic (CLSM) studies of megagametophyte development showed abnormal mitotic divisions with reduced number or total absence of polar nuclei in about 30-35% megagametophytes of OsAPC6 mutant leading to failure of endosperm and hence embryo and seed development
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	endosperm	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	dwarf	A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion	A dwarf mutant (Oryza sativa anaphase-promoting complex 6 (OsAPC6)) of rice cultivar Basmati 370 with 50% reduced plant height as compared to the wild type was isolated by Agrobacterium tumefaciens-mediated transformation using Hm(R) Ds cassette
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	height	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6	A T-DNA insertional mutant OsAPC6 of rice, with gibberellic acid insensitivity and reduced height, had up to 45% reduced seed set
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	height	A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion	A dwarf mutant (Oryza sativa anaphase-promoting complex 6 (OsAPC6)) of rice cultivar Basmati 370 with 50% reduced plant height as compared to the wild type was isolated by Agrobacterium tumefaciens-mediated transformation using Hm(R) Ds cassette
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	height	A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion	The knockout mutant OsAPC6 interferes with the gibberellic acid signaling pathway leading to reduced height and cell size probably through ubiquitin-mediated proteolysis
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	seed development	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6	Confocal laser scanning microscopic (CLSM) studies of megagametophyte development showed abnormal mitotic divisions with reduced number or total absence of polar nuclei in about 30-35% megagametophytes of OsAPC6 mutant leading to failure of endosperm and hence embryo and seed development
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	sterility	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6	Abnormal female gametophyte development, high sterility and segregation of tall and gibberellic acid sensitive plants without selectable marker Hpt in the selfed progeny of OsAPC6 mutant plants indicate that the mutant could be maintained in heterozygous condition
OsAPC6	Os03g0236900|Os03g0236966	LOC_Os03g13370	sterility	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6
OsAPL	Os02g0174000	LOC_Os02g07770	leaf	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).
OsAPL	Os02g0174000	LOC_Os02g07770	growth	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	OsAPL positively controls the seedling growth and grain size in rice by targeting the plasma membrane H(+)-ATPase-encoding gene, OsRHA1, as well as drastically affects genes encoding H(+)-coupled secondary active transporters
OsAPL	Os02g0174000	LOC_Os02g07770	grain	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	OsAPL positively controls the seedling growth and grain size in rice by targeting the plasma membrane H(+)-ATPase-encoding gene, OsRHA1, as well as drastically affects genes encoding H(+)-coupled secondary active transporters
OsAPL	Os02g0174000	LOC_Os02g07770	grain	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	 Overexpression of OsAPL leads to a 10% increase in grain yield at the heading stage
OsAPL	Os02g0174000	LOC_Os02g07770	grain size	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	OsAPL positively controls the seedling growth and grain size in rice by targeting the plasma membrane H(+)-ATPase-encoding gene, OsRHA1, as well as drastically affects genes encoding H(+)-coupled secondary active transporters
OsAPL	Os02g0174000	LOC_Os02g07770	seedling	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	OsAPL positively controls the seedling growth and grain size in rice by targeting the plasma membrane H(+)-ATPase-encoding gene, OsRHA1, as well as drastically affects genes encoding H(+)-coupled secondary active transporters
OsAPL	Os02g0174000	LOC_Os02g07770	grain yield	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	 Overexpression of OsAPL leads to a 10% increase in grain yield at the heading stage
OsAPL	Os02g0174000	LOC_Os02g07770	yield	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	 Overexpression of OsAPL leads to a 10% increase in grain yield at the heading stage
OsAPL	Os02g0174000	LOC_Os02g07770	yield	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	 Taken together, our findings suggest the involvement of OsAPL in nutrients transport and crop yield accumulation in rice
OsAPL	Os02g0174000	LOC_Os02g07770	transporter	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	 Decreased expression of OsAPL leads to a decreased expression level of nutrient transporter genes
OsAPL	Os02g0174000	LOC_Os02g07770	plasma membrane	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	OsAPL positively controls the seedling growth and grain size in rice by targeting the plasma membrane H(+)-ATPase-encoding gene, OsRHA1, as well as drastically affects genes encoding H(+)-coupled secondary active transporters
OsAPL	Os02g0174000	LOC_Os02g07770	plasma membrane	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	 OsAPL acts as a transcriptional activator of OsRHA1, which encodes a subunit of the plasma membrane H(+)-ATPase (primary transporter)
OsAPL	Os02g0174000	LOC_Os02g07770	transcriptional activator	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	 OsAPL acts as a transcriptional activator of OsRHA1, which encodes a subunit of the plasma membrane H(+)-ATPase (primary transporter)
OsAPL	Os02g0174000	LOC_Os02g07770	seedling growth	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	OsAPL positively controls the seedling growth and grain size in rice by targeting the plasma membrane H(+)-ATPase-encoding gene, OsRHA1, as well as drastically affects genes encoding H(+)-coupled secondary active transporters
OsAPL1|OsAGPL3|OsAGPL1	Os03g0735000	LOC_Os03g52460	leaf	Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.)	Subcellular localization studies using green fluorescent protein (GFP) fusion constructs indicate that OsAGPS2a, the product of the leaf-preferential transcript of OsAGPS2, and OsAGPS1, OsAGPL1, OsAGPL3, and OsAGPL4 are plastid-targeted isoforms
OsAPL1|OsAGPL3|OsAGPL1	Os03g0735000	LOC_Os03g52460	seed	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPL3 was predominantly expressed in the middle phases of seed development, and OsAPS1, OsAPL1 and OsAPL2 were expressed later in seed development
OsAPL1|OsAGPL3|OsAGPL1	Os03g0735000	LOC_Os03g52460	leaf	A mutant of rice lacking the leaf large subunit of ADP-glucose pyrophosphorylase has drastically reduced leaf starch content but grows normally	Characterisation of the mutant (apl1) showed that the LSU encoded by OsAPL1 is required for AGPase activity in rice leaf blades
OsAPL1|OsAGPL3|OsAGPL1	Os03g0735000	LOC_Os03g52460	seed development	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPL3 was predominantly expressed in the middle phases of seed development, and OsAPS1, OsAPL1 and OsAPL2 were expressed later in seed development
OsAPL1|OsAGPL3|OsAGPL1	Os03g0735000	LOC_Os03g52460	homeostasis	Two ADP-glucose pyrophosphorylase subunits, OsAGPL1 and OsAGPS1, modulate phosphorus homeostasis in rice	Two ADP-glucose pyrophosphorylase subunits, OsAGPL1 and OsAGPS1, modulate phosphorus homeostasis in rice
OsAPL1|OsAGPL3|OsAGPL1	Os03g0735000	LOC_Os03g52460	phosphorus	Two ADP-glucose pyrophosphorylase subunits, OsAGPL1 and OsAGPS1, modulate phosphorus homeostasis in rice	Two ADP-glucose pyrophosphorylase subunits, OsAGPL1 and OsAGPS1, modulate phosphorus homeostasis in rice
OsAPL1|OsAGPL3|OsAGPL1	Os03g0735000	LOC_Os03g52460	pyrophosphorylase	Two ADP-glucose pyrophosphorylase subunits, OsAGPL1 and OsAGPS1, modulate phosphorus homeostasis in rice	Two ADP-glucose pyrophosphorylase subunits, OsAGPL1 and OsAGPS1, modulate phosphorus homeostasis in rice
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	Phenotypic and Candidate Gene Analysis of a New Floury Endosperm Mutant (osagpl2-3) in Rice	A floury endosperm mutant, osagpl2-3, was isolated from the M2 generation of japonica rice cultivar Nipponbare following ethyl methane sulfonate mutagenesis
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	Phenotypic and Candidate Gene Analysis of a New Floury Endosperm Mutant (osagpl2-3) in Rice	The osagpl2-3 mutant produced a white-core endosperm compared to the transparent endosperm of the wild type (WT)
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	Phenotypic and Candidate Gene Analysis of a New Floury Endosperm Mutant (osagpl2-3) in Rice	Phenotypic and Candidate Gene Analysis of a New Floury Endosperm Mutant (osagpl2-3) in Rice
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	temperature	Phenotypic and Candidate Gene Analysis of a New Floury Endosperm Mutant (osagpl2-3) in Rice	The analysis for cooking and nutrition quality traits indicated that the values of gel consistency, gelatinization temperature, and rapid viscosity analysis profile of osagpl2-3 grains were lower than those of the WT
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	seed development	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPL3 was predominantly expressed in the middle phases of seed development, and OsAPS1, OsAPL1 and OsAPL2 were expressed later in seed development
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch	Phenotypic and Candidate Gene Analysis of a New Floury Endosperm Mutant (osagpl2-3) in Rice	The results from scanning electron microscope showed that the osagpl2-3 mutant grains comprised of round and loosely packed starch granules, some of which were compounded
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	grain	Phenotypic and Candidate Gene Analysis of a New Floury Endosperm Mutant (osagpl2-3) in Rice	The results from scanning electron microscope showed that the osagpl2-3 mutant grains comprised of round and loosely packed starch granules, some of which were compounded
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	grain	Phenotypic and Candidate Gene Analysis of a New Floury Endosperm Mutant (osagpl2-3) in Rice	The analysis for cooking and nutrition quality traits indicated that the values of gel consistency, gelatinization temperature, and rapid viscosity analysis profile of osagpl2-3 grains were lower than those of the WT
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	seed	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPL3 was predominantly expressed in the middle phases of seed development, and OsAPS1, OsAPL1 and OsAPL2 were expressed later in seed development
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	ADP-glucose pyrophosphorylase large subunit 2 is essential for storage substance accumulation and subunit interactions in rice endosperm	Moreover, the expression of OsAGPL2 and its counterpart, OsAGPS2b, was highly coordinated in rice endosperm
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	ADP-glucose pyrophosphorylase large subunit 2 is essential for storage substance accumulation and subunit interactions in rice endosperm	Yeast two-hybrid and BiFC assays verified direct interactions between OsAGPL2 and OsAGPS2b as well as OsAGPL1 and OsAGPS1, supporting the model for spatiotemporal complex formation of AGPase isoforms in rice endosperm
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	ADP-glucose pyrophosphorylase large subunit 2 is essential for storage substance accumulation and subunit interactions in rice endosperm.	Moreover, the expression of OsAGPL2 and its counterpart, OsAGPS2b, was highly coordinated in rice endosperm
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	ADP-glucose pyrophosphorylase large subunit 2 is essential for storage substance accumulation and subunit interactions in rice endosperm.	Yeast two-hybrid and BiFC assays verified direct interactions between OsAGPL2 and OsAGPS2b as well as OsAGPL1 and OsAGPS1, supporting the model for spatiotemporal complex formation of AGPase isoforms in rice endosperm
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	grain	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	Grains of gif2 showed a slower filling rate and a significant lower final grain weight and yield compared to wild-type
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	grain	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	All these results suggest that GIF2 plays important roles in the regulation of grain filling and starch biosynthesis during caryopsis development, and that it has been preserved during selection throughout domestication of modern rice
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	domestication	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	All these results suggest that GIF2 plays important roles in the regulation of grain filling and starch biosynthesis during caryopsis development, and that it has been preserved during selection throughout domestication of modern rice
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	The starch content in gif2 was noticeably decreased and its physicochemical properties were also altered
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	Transcript levels for granule-bound starch synthase, starch synthase, starch branching enzyme and starch debranching enzyme were distinctly elevated in gif2 grains
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	All these results suggest that GIF2 plays important roles in the regulation of grain filling and starch biosynthesis during caryopsis development, and that it has been preserved during selection throughout domestication of modern rice
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	yield	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	Grains of gif2 showed a slower filling rate and a significant lower final grain weight and yield compared to wild-type
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	branching	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	Transcript levels for granule-bound starch synthase, starch synthase, starch branching enzyme and starch debranching enzyme were distinctly elevated in gif2 grains
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	Moreover, gif2 endosperm cells showed obvious defects in compound granule formation
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	grain filling	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	All these results suggest that GIF2 plays important roles in the regulation of grain filling and starch biosynthesis during caryopsis development, and that it has been preserved during selection throughout domestication of modern rice
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	grain weight	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	Grains of gif2 showed a slower filling rate and a significant lower final grain weight and yield compared to wild-type
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch biosynthesis	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	All these results suggest that GIF2 plays important roles in the regulation of grain filling and starch biosynthesis during caryopsis development, and that it has been preserved during selection throughout domestication of modern rice
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	pyrophosphorylase	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	Positional cloning identified GIF2 to encode an ADP-glucose pyrophosphorylase (AGP) large subunit, AGPL2; consequently, AGP enzyme activity in gif2 endosperms was remarkably decreased
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	leaf	CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.	 This reflected the unanticipated expression of both OsAPL2 and OsAPS2b in the leaves, generating a complete ectopic AGPase in the leaf cytosol, and a corresponding decrease in the expression of the plastidial small subunit OsAPS2a that was only partially complemented by an increase in the expression of OsAPS1
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch	CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.	The first committed step in the endosperm starch biosynthetic pathway is catalyzed by the cytosolic glucose-1-phosphate adenylyl transferase (AGPase) comprising large and small subunits encoded by the OsAPL2 and OsAPS2b genes, respectively
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch	CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.	 OsAPL2 is expressed solely in the endosperm so we hypothesized that mutating this gene would block starch biosynthesis in the endosperm without affecting the leaves
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.	The first committed step in the endosperm starch biosynthetic pathway is catalyzed by the cytosolic glucose-1-phosphate adenylyl transferase (AGPase) comprising large and small subunits encoded by the OsAPL2 and OsAPS2b genes, respectively
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	endosperm	CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.	 OsAPL2 is expressed solely in the endosperm so we hypothesized that mutating this gene would block starch biosynthesis in the endosperm without affecting the leaves
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch biosynthesis	CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.	 OsAPL2 is expressed solely in the endosperm so we hypothesized that mutating this gene would block starch biosynthesis in the endosperm without affecting the leaves
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.
OsAPL2|osagpl2-3|OsAGPL2|GIF2	Os01g0633100	LOC_Os01g44220	starch	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.	 Transcriptomic profiling analyses revealed that the loss-of-function of OsMADS14 leads to significantly downregulated expression of many core starch synthesis genes, including OsAGPL2 and Waxy
OsAPL3	Os05g0580000	LOC_Os05g50380	starch	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	Interestingly, ABA alone did not affect the gene expression of OsAPL3 and starch content
OsAPL3	Os05g0580000	LOC_Os05g50380	starch	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	Collectively, these results indicated that the expression level of OsAPL3 and starch content in the cultured cells were cooperatively controlled by alterations in the concentration of both sucrose and ABA
OsAPL3	Os05g0580000	LOC_Os05g50380	seed development	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPL3 was predominantly expressed in the middle phases of seed development, and OsAPS1, OsAPL1 and OsAPL2 were expressed later in seed development
OsAPL3	Os05g0580000	LOC_Os05g50380	ABA	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	Interestingly, ABA alone did not affect the gene expression of OsAPL3 and starch content
OsAPL3	Os05g0580000	LOC_Os05g50380	seed	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPL3 was predominantly expressed in the middle phases of seed development, and OsAPS1, OsAPL1 and OsAPL2 were expressed later in seed development
OsAPL4|OsAGPL4	Os07g0243200	LOC_Os07g13980	leaf	Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.)	Subcellular localization studies using green fluorescent protein (GFP) fusion constructs indicate that OsAGPS2a, the product of the leaf-preferential transcript of OsAGPS2, and OsAGPS1, OsAGPL1, OsAGPL3, and OsAGPL4 are plastid-targeted isoforms
OsAPL4|OsAGPL4	Os07g0243200	LOC_Os07g13980	seed	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPS2 and OsAPL4 were constitutively expressed and these isoforms were coordinated with starch accumulation in the developing rice seed
OsAPL4|OsAGPL4	Os07g0243200	LOC_Os07g13980	starch	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPS2 and OsAPL4 were constitutively expressed and these isoforms were coordinated with starch accumulation in the developing rice seed
OsAPS1|OsAGPS1	Os09g0298200	LOC_Os09g12660	seed development	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPL3 was predominantly expressed in the middle phases of seed development, and OsAPS1, OsAPL1 and OsAPL2 were expressed later in seed development
OsAPS1|OsAGPS1	Os09g0298200	LOC_Os09g12660	leaf	Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.)	Subcellular localization studies using green fluorescent protein (GFP) fusion constructs indicate that OsAGPS2a, the product of the leaf-preferential transcript of OsAGPS2, and OsAGPS1, OsAGPL1, OsAGPL3, and OsAGPL4 are plastid-targeted isoforms
OsAPS1|OsAGPS1	Os09g0298200	LOC_Os09g12660	seed	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPL3 was predominantly expressed in the middle phases of seed development, and OsAPS1, OsAPL1 and OsAPL2 were expressed later in seed development
OsAPS2|OsAGPS2b	Os08g0345800	LOC_Os08g25734	starch	Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.)	Analysis of osagps2 and osagpl2 mutants revealed that a lesion of one of the two cytosolic isoforms, OsAGPL2 and OsAGPS2b, causes a shrunken endosperm due to a remarkable reduction in starch synthesis
OsAPS2|OsAGPS2b	Os08g0345800	LOC_Os08g25734	seed	Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.)	In contrast, two isoforms, SSU OsAGPS2b which is a product of a seed-specific transcript of OsAGPS2, and LSU OsAGPL2, are localized in the cytosol
OsAPS2|OsAGPS2b	Os08g0345800	LOC_Os08g25734	endosperm	Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.)	Analysis of osagps2 and osagpl2 mutants revealed that a lesion of one of the two cytosolic isoforms, OsAGPL2 and OsAGPS2b, causes a shrunken endosperm due to a remarkable reduction in starch synthesis
OsAPS2|OsAGPS2b	Os08g0345800	LOC_Os08g25734	endosperm	Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.)	Western blot analysis of the osagp mutants and wild type plants demonstrated that OsAGPS2a is an SSU isoform mainly present in leaves, and that OsAGPS2b and OsAGPL2 are the major SSU and LSU isoforms, respectively, in the endosperm
OsAPS2|OsAGPS2b	Os08g0345800	LOC_Os08g25734	starch	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPS2 and OsAPL4 were constitutively expressed and these isoforms were coordinated with starch accumulation in the developing rice seed
OsAPS2|OsAGPS2b	Os08g0345800	LOC_Os08g25734	seed	Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA	OsAPS2 and OsAPL4 were constitutively expressed and these isoforms were coordinated with starch accumulation in the developing rice seed
OsAPT1|APRT	Os12g0589100	LOC_Os12g39860	seed	Mapping QTLs and candidate genes for iron and zinc concentrations in unpolished rice of MadhukarxSwarna RILs	Thus the high priority candidate genes for high Fe and Zn in seeds are OsYSL1 and OsMTP1 for iron, OsARD2, OsIRT1, OsNAS1, OsNAS2 for zinc and OsNAS3, OsNRAMP1, Heavy metal ion transport and APRT for both iron and zinc together based on our genetic mapping studies as these genes strictly underlie QTLs
OsAPT1|APRT	Os12g0589100	LOC_Os12g39860	zinc	Mapping QTLs and candidate genes for iron and zinc concentrations in unpolished rice of MadhukarxSwarna RILs	Thus the high priority candidate genes for high Fe and Zn in seeds are OsYSL1 and OsMTP1 for iron, OsARD2, OsIRT1, OsNAS1, OsNAS2 for zinc and OsNAS3, OsNRAMP1, Heavy metal ion transport and APRT for both iron and zinc together based on our genetic mapping studies as these genes strictly underlie QTLs
OsAPT1|APRT	Os12g0589100	LOC_Os12g39860	iron	Mapping QTLs and candidate genes for iron and zinc concentrations in unpolished rice of MadhukarxSwarna RILs	Thus the high priority candidate genes for high Fe and Zn in seeds are OsYSL1 and OsMTP1 for iron, OsARD2, OsIRT1, OsNAS1, OsNAS2 for zinc and OsNAS3, OsNRAMP1, Heavy metal ion transport and APRT for both iron and zinc together based on our genetic mapping studies as these genes strictly underlie QTLs
OsAPT2	Os04g0504000	LOC_Os04g42520	flower	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	An antisense strategy was used to suppress the expression of the OsAPT2 homolog in Arabidopsis, and the obtained homozygous transgenic plants contained lower AMP content, displayed lower pollen germination rates and exhibited some abnormalities in leaf phenotypes and flowering timing
OsAPT2	Os04g0504000	LOC_Os04g42520	sterility	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	Since the panicle is likely the thermo-sensitive organ at the early stages of pollen fertility alternation, the observed heat-induced change in the OsAPT2 expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility (TGMS) in 'Annong S-1'
OsAPT2	Os04g0504000	LOC_Os04g42520	temperature	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	RT-PCR analysis indicated that the OsAPT2 transcript in the young panicles of 'Annong S-1' is down-regulated at 29 degrees C, the critical temperature for induction of 'Annong S-1' fertility conversion
OsAPT2	Os04g0504000	LOC_Os04g42520	leaf	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	An antisense strategy was used to suppress the expression of the OsAPT2 homolog in Arabidopsis, and the obtained homozygous transgenic plants contained lower AMP content, displayed lower pollen germination rates and exhibited some abnormalities in leaf phenotypes and flowering timing
OsAPT2	Os04g0504000	LOC_Os04g42520	pollen	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	Since the panicle is likely the thermo-sensitive organ at the early stages of pollen fertility alternation, the observed heat-induced change in the OsAPT2 expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility (TGMS) in 'Annong S-1'
OsAPT2	Os04g0504000	LOC_Os04g42520	pollen	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	An antisense strategy was used to suppress the expression of the OsAPT2 homolog in Arabidopsis, and the obtained homozygous transgenic plants contained lower AMP content, displayed lower pollen germination rates and exhibited some abnormalities in leaf phenotypes and flowering timing
OsAPT2	Os04g0504000	LOC_Os04g42520	fertility	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	RT-PCR analysis indicated that the OsAPT2 transcript in the young panicles of 'Annong S-1' is down-regulated at 29 degrees C, the critical temperature for induction of 'Annong S-1' fertility conversion
OsAPT2	Os04g0504000	LOC_Os04g42520	fertility	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	Since the panicle is likely the thermo-sensitive organ at the early stages of pollen fertility alternation, the observed heat-induced change in the OsAPT2 expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility (TGMS) in 'Annong S-1'
OsAPT2	Os04g0504000	LOC_Os04g42520	panicle	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	RT-PCR analysis indicated that the OsAPT2 transcript in the young panicles of 'Annong S-1' is down-regulated at 29 degrees C, the critical temperature for induction of 'Annong S-1' fertility conversion
OsAPT2	Os04g0504000	LOC_Os04g42520	panicle	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS	Since the panicle is likely the thermo-sensitive organ at the early stages of pollen fertility alternation, the observed heat-induced change in the OsAPT2 expression pattern in young panicles may mediate, at least in part, thermo-sensitive genic male sterility (TGMS) in 'Annong S-1'
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	cold stress	Heat shock-mediated APX gene expression and protection against chilling injury in rice seedlings	The APXa mRNA level in preheated seedlings was still higher than unheated seedlings under cold stress
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	growth	Importance of ascorbate peroxidases OsAPX1 and OsAPX2 in the rice pathogen response pathways and growth and reproduction revealed by their transcriptional profiling	Importance of ascorbate peroxidases OsAPX1 and OsAPX2 in the rice pathogen response pathways and growth and reproduction revealed by their transcriptional profiling
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	chilling	Enhanced chilling tolerance at the booting stage in rice by transgenic overexpression of the ascorbate peroxidase gene, OsAPXa	To determine whether antioxidant capacity affects the ability of rice plants to withstand chilling at the booting stage, we produced transgenic rice plants that overexpress OsAPXa and have increased APX activity
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	chilling	Enhanced chilling tolerance at the booting stage in rice by transgenic overexpression of the ascorbate peroxidase gene, OsAPXa	Enhanced chilling tolerance at the booting stage in rice by transgenic overexpression of the ascorbate peroxidase gene, OsAPXa
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	seedling	Heat shock-mediated APX gene expression and protection against chilling injury in rice seedlings	APXa mRNA levels increased within 1 h after seedlings were exposed to 42 °C
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	seedling	Heat shock-mediated APX gene expression and protection against chilling injury in rice seedlings	The APXa mRNA level in preheated seedlings was still higher than unheated seedlings under cold stress
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	seedling	Heat shock-mediated APX gene expression and protection against chilling injury in rice seedlings	Heat shock induction of the APXa gene could be a possible cause of reduced chilling injury in rice seedlings
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	temperature	Heat shock-mediated APX gene expression and protection against chilling injury in rice seedlings	The cytosolic APX gene expression in response to high and low temperature was analysed with an APXa gene probe
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	chilling	Heat shock-mediated APX gene expression and protection against chilling injury in rice seedlings	Heat shock induction of the APXa gene could be a possible cause of reduced chilling injury in rice seedlings
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	transcription factor	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	transcription factor	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 Here, by ChIP (chromatin immunoprecipitation)-seq, we found that ZFP36, a rice zinc finger transcription factor, could directly bind to the promoter of OsAPX1, coding an ascorbate peroxidase (APX) which has the most affinity for H2O2 (substrate; a type of ROS), and act as a transcriptional activator of OsAPX1 promoter
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	seed	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	seed	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 Thus, our conclusion is that OsAPX1 is a direct target of ZFP36 and OsLEA5 could interact with ZFP36 to co-regulate ABA-inhibited seed germination by controlling the expression of OsAPX1
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	seed germination	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	seed germination	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 Thus, our conclusion is that OsAPX1 is a direct target of ZFP36 and OsLEA5 could interact with ZFP36 to co-regulate ABA-inhibited seed germination by controlling the expression of OsAPX1
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	zinc	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	zinc	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 Here, by ChIP (chromatin immunoprecipitation)-seq, we found that ZFP36, a rice zinc finger transcription factor, could directly bind to the promoter of OsAPX1, coding an ascorbate peroxidase (APX) which has the most affinity for H2O2 (substrate; a type of ROS), and act as a transcriptional activator of OsAPX1 promoter
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	transcriptional activator	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 Here, by ChIP (chromatin immunoprecipitation)-seq, we found that ZFP36, a rice zinc finger transcription factor, could directly bind to the promoter of OsAPX1, coding an ascorbate peroxidase (APX) which has the most affinity for H2O2 (substrate; a type of ROS), and act as a transcriptional activator of OsAPX1 promoter
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	resistance	OsAPX1 Positively Contributes to Rice Blast Resistance.	 OsAPX1 also affects salicylic acid (SA) synthesis and signaling, which contribute to blast resistance
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	salicylic acid	OsAPX1 Positively Contributes to Rice Blast Resistance.	 OsAPX1 also affects salicylic acid (SA) synthesis and signaling, which contribute to blast resistance
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	blast	OsAPX1 Positively Contributes to Rice Blast Resistance.	OsAPX1 Positively Contributes to Rice Blast Resistance.
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	blast	OsAPX1 Positively Contributes to Rice Blast Resistance.	 OsAPX1 also affects salicylic acid (SA) synthesis and signaling, which contribute to blast resistance
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	immunity	OsAPX1 Positively Contributes to Rice Blast Resistance.	 In conclusion, we show that OsAPX1 is a key factor that connects the upstream gene silencing and transcription regulatory routes with the downstream phytohormone and redox pathway, which provides an insight into the sophisticated regulatory network of rice innate immunity
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	magnaporthe oryzae	OsAPX1 Positively Contributes to Rice Blast Resistance.	 Here, we report that OsAPX1 also promotes ROS production such that a delicate cellular ROS homeostasis is achieved temporally after Magnaporthe oryzae infection
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	innate immunity	OsAPX1 Positively Contributes to Rice Blast Resistance.	 In conclusion, we show that OsAPX1 is a key factor that connects the upstream gene silencing and transcription regulatory routes with the downstream phytohormone and redox pathway, which provides an insight into the sophisticated regulatory network of rice innate immunity
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	homeostasis	OsAPX1 Positively Contributes to Rice Blast Resistance.	 Here, we report that OsAPX1 also promotes ROS production such that a delicate cellular ROS homeostasis is achieved temporally after Magnaporthe oryzae infection
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	blast resistance	OsAPX1 Positively Contributes to Rice Blast Resistance.	OsAPX1 Positively Contributes to Rice Blast Resistance.
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	blast resistance	OsAPX1 Positively Contributes to Rice Blast Resistance.	 OsAPX1 also affects salicylic acid (SA) synthesis and signaling, which contribute to blast resistance
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	transcription regulator	OsAPX1 Positively Contributes to Rice Blast Resistance.	 In conclusion, we show that OsAPX1 is a key factor that connects the upstream gene silencing and transcription regulatory routes with the downstream phytohormone and redox pathway, which provides an insight into the sophisticated regulatory network of rice innate immunity
OsAPX1|APXa	Os03g0285700	LOC_Os03g17690	phytohormone	OsAPX1 Positively Contributes to Rice Blast Resistance.	 In conclusion, we show that OsAPX1 is a key factor that connects the upstream gene silencing and transcription regulatory routes with the downstream phytohormone and redox pathway, which provides an insight into the sophisticated regulatory network of rice innate immunity
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	leaf	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Loss of function in OsAPX2 affected the growth and development of rice seedlings, resulting in semi-dwarf seedlings, yellow-green leaves, leaf lesion mimic and seed sterility
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	growth	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Loss of function in OsAPX2 affected the growth and development of rice seedlings, resulting in semi-dwarf seedlings, yellow-green leaves, leaf lesion mimic and seed sterility
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	growth	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Taken together, the cytosolic ascorbate peroxidase OsAPX2 plays an important role in rice growth and development by protecting the seedlings from abiotic stresses through scavenging reactive oxygen species
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	growth	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	sterility	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Loss of function in OsAPX2 affected the growth and development of rice seedlings, resulting in semi-dwarf seedlings, yellow-green leaves, leaf lesion mimic and seed sterility
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	salt	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	In this report, we studied the function of OsAPX2 gene using a T-DNA knockout mutant under the treatment of drought, salt and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	salt	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	OsAPX2 expression was developmental- and spatial-regulated, and was induced by drought, salt, and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	salt	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	cold stress	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	In this report, we studied the function of OsAPX2 gene using a T-DNA knockout mutant under the treatment of drought, salt and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	cold stress	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	OsAPX2 expression was developmental- and spatial-regulated, and was induced by drought, salt, and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	cold stress	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	seedling	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Loss of function in OsAPX2 affected the growth and development of rice seedlings, resulting in semi-dwarf seedlings, yellow-green leaves, leaf lesion mimic and seed sterility
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	seedling	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Taken together, the cytosolic ascorbate peroxidase OsAPX2 plays an important role in rice growth and development by protecting the seedlings from abiotic stresses through scavenging reactive oxygen species
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	growth	Importance of ascorbate peroxidases OsAPX1 and OsAPX2 in the rice pathogen response pathways and growth and reproduction revealed by their transcriptional profiling	Importance of ascorbate peroxidases OsAPX1 and OsAPX2 in the rice pathogen response pathways and growth and reproduction revealed by their transcriptional profiling
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	drought	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	In this report, we studied the function of OsAPX2 gene using a T-DNA knockout mutant under the treatment of drought, salt and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	drought	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	OsAPX2 expression was developmental- and spatial-regulated, and was induced by drought, salt, and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	drought	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	seed	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Loss of function in OsAPX2 affected the growth and development of rice seedlings, resulting in semi-dwarf seedlings, yellow-green leaves, leaf lesion mimic and seed sterility
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	seed	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Taken together, the cytosolic ascorbate peroxidase OsAPX2 plays an important role in rice growth and development by protecting the seedlings from abiotic stresses through scavenging reactive oxygen species
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	abiotic stress	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Osapx2 mutants had lower APX activity and were sensitive to abiotic stresses; overexpression of OsAPX2 increased APX activity and enhanced stress tolerance
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	abiotic stress	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Taken together, the cytosolic ascorbate peroxidase OsAPX2 plays an important role in rice growth and development by protecting the seedlings from abiotic stresses through scavenging reactive oxygen species
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	dwarf	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses	Loss of function in OsAPX2 affected the growth and development of rice seedlings, resulting in semi-dwarf seedlings, yellow-green leaves, leaf lesion mimic and seed sterility
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	leaf	Cytosolic APX2 is a pleiotropic protein involved in H2O2homeostasis, chloroplast protection, plant architecture and fertility maintenance.	Loss of OsAPX2 altered rice architecture including shoot height and leaf inclination, resulting in shoot dwarfing, leaf dispersion and fertility decline
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	shoot	Cytosolic APX2 is a pleiotropic protein involved in H2O2homeostasis, chloroplast protection, plant architecture and fertility maintenance.	Loss of OsAPX2 altered rice architecture including shoot height and leaf inclination, resulting in shoot dwarfing, leaf dispersion and fertility decline
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	architecture	Cytosolic APX2 is a pleiotropic protein involved in H2O2homeostasis, chloroplast protection, plant architecture and fertility maintenance.	Loss of OsAPX2 altered rice architecture including shoot height and leaf inclination, resulting in shoot dwarfing, leaf dispersion and fertility decline
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	height	Cytosolic APX2 is a pleiotropic protein involved in H2O2homeostasis, chloroplast protection, plant architecture and fertility maintenance.	Loss of OsAPX2 altered rice architecture including shoot height and leaf inclination, resulting in shoot dwarfing, leaf dispersion and fertility decline
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	fertility	Cytosolic APX2 is a pleiotropic protein involved in H2O2homeostasis, chloroplast protection, plant architecture and fertility maintenance.	Loss of OsAPX2 altered rice architecture including shoot height and leaf inclination, resulting in shoot dwarfing, leaf dispersion and fertility decline
OsAPX2|APXb	Os07g0694700	LOC_Os07g49400	salt	Functional switching of ascorbate peroxidase 2 of rice (OsAPX2) between peroxidase and molecular chaperone.	Additionally, the OsAPX2 conformational changes could be regulated by salt and heat stresses and these stimulated OsAPX2 dissociation and association, respectively
OsAPX4	Os08g0549100	LOC_Os08g43560	leaf	Rice peroxisomal ascorbate peroxidase knockdown affects ROS signaling and triggers early leaf senescence	The results imply that OsAPX4 gene has an important role in leaf senescence pathway mediated by ROS signaling
OsAPX4	Os08g0549100	LOC_Os08g43560	leaf senescence	Rice peroxisomal ascorbate peroxidase knockdown affects ROS signaling and triggers early leaf senescence	The results imply that OsAPX4 gene has an important role in leaf senescence pathway mediated by ROS signaling
OsAPX4	Os08g0549100	LOC_Os08g43560	senescence	Rice peroxisomal ascorbate peroxidase knockdown affects ROS signaling and triggers early leaf senescence	Silencing of OsAPX4 and OsAPX3 expression in RNAiOsAPX4 did not affect the growth of plants under growth chamber conditions, but aging transgenic plants interestingly displayed an early senescence phenotype
OsAPX4	Os08g0549100	LOC_Os08g43560	senescence	Rice peroxisomal ascorbate peroxidase knockdown affects ROS signaling and triggers early leaf senescence	The results imply that OsAPX4 gene has an important role in leaf senescence pathway mediated by ROS signaling
OsAPX4	Os08g0549100	LOC_Os08g43560	growth	Rice peroxisomal ascorbate peroxidase knockdown affects ROS signaling and triggers early leaf senescence	Silencing of OsAPX4 and OsAPX3 expression in RNAiOsAPX4 did not affect the growth of plants under growth chamber conditions, but aging transgenic plants interestingly displayed an early senescence phenotype
OsAPX7	Os04g0434800	LOC_Os04g35520	chloroplast	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 Our results demonstrate that OsAPX7 might be involved in signaling transduction pathways related to drought stress response, contributing to the understanding of the physiological role of chloroplast APX isoforms in rice
OsAPX7	Os04g0434800	LOC_Os04g35520	drought	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 Our results demonstrate that OsAPX7 might be involved in signaling transduction pathways related to drought stress response, contributing to the understanding of the physiological role of chloroplast APX isoforms in rice
OsAPX7	Os04g0434800	LOC_Os04g35520	stress	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 Our results demonstrate that OsAPX7 might be involved in signaling transduction pathways related to drought stress response, contributing to the understanding of the physiological role of chloroplast APX isoforms in rice
OsAPX7	Os04g0434800	LOC_Os04g35520	drought stress	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 Our results demonstrate that OsAPX7 might be involved in signaling transduction pathways related to drought stress response, contributing to the understanding of the physiological role of chloroplast APX isoforms in rice
OsAPX7	Os04g0434800	LOC_Os04g35520	drought stress 	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 Our results demonstrate that OsAPX7 might be involved in signaling transduction pathways related to drought stress response, contributing to the understanding of the physiological role of chloroplast APX isoforms in rice
OsAPX7	Os04g0434800	LOC_Os04g35520	photosynthesis	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 In this work, we performed a functional study of the stromal APX in rice (OsAPX7) and demonstrated that silencing of OsAPX7 did not impact plant growth, redox state, or photosynthesis parameters
OsAPX7	Os04g0434800	LOC_Os04g35520	plant growth	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 In this work, we performed a functional study of the stromal APX in rice (OsAPX7) and demonstrated that silencing of OsAPX7 did not impact plant growth, redox state, or photosynthesis parameters
OsAPX7	Os04g0434800	LOC_Os04g35520	reactive oxygen species	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 RNA-seq analyses indicate that the silencing of OsAPX7 did not lead to changes in the global expression of genes related to reactive oxygen species metabolism
OsAPX7	Os04g0434800	LOC_Os04g35520	stress response	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 Our results demonstrate that OsAPX7 might be involved in signaling transduction pathways related to drought stress response, contributing to the understanding of the physiological role of chloroplast APX isoforms in rice
OsAPX7	Os04g0434800	LOC_Os04g35520	drought stress response	Stromal Ascorbate Peroxidase (OsAPX7) Modulates Drought Stress Tolerance in Rice (Oryza sativa).	 Our results demonstrate that OsAPX7 might be involved in signaling transduction pathways related to drought stress response, contributing to the understanding of the physiological role of chloroplast APX isoforms in rice
OsAPx8	Os02g0553200	LOC_Os02g34810	ABA	NaCl-induced expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativaL.) seedlings is not associated with osmotic component	Here we show that ABA level but not OsAPx8 expression was enhanced at a concentration of mannitol iso-osmotic with 150 mM NaCl suggests that NaCl-enhanced OsAPx8 expression is not associated with osmotic component
OsAPx8	Os02g0553200	LOC_Os02g34810	root	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	NaCl at 150 mM and 200 mM increased the expression of OsAPx8 and the activities of APx, but had no effect on the expression of OsAPx1, OsAPx2, OsAPx3, OsAPx4, OsAPx5, OsAPx6, and OsAPx7 in rice roots
OsAPx8	Os02g0553200	LOC_Os02g34810	root	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	Exogenously applied ABA also specifically enhanced the expression of OsAPx8 in rice roots
OsAPx8	Os02g0553200	LOC_Os02g34810	root	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	It appears that NaCl-enhanced expression of OsAPx8 in rice roots is mediated through an accumulation of ABA
OsAPx8	Os02g0553200	LOC_Os02g34810	root	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	Evidence is provided to show that Na(+) but not Cl(-) is required for enhancing OsAPx8 expression, APx activity, and ABA accumulation in rice roots treated with NaCl
OsAPx8	Os02g0553200	LOC_Os02g34810	root	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	Diphenylene iodonium treatment, which is known to inhibit NaCl-induced accumulation of H(2)O(2) in rice roots, did not suppress OsAPx8 induction and ABA accumulation by NaCl
OsAPx8	Os02g0553200	LOC_Os02g34810	root	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	It appears that H(2)O(2) is not involved in the regulation of NaCl-induced OsAPx8 expression in rice roots
OsAPx8	Os02g0553200	LOC_Os02g34810	ABA	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	Exogenously applied ABA also specifically enhanced the expression of OsAPx8 in rice roots
OsAPx8	Os02g0553200	LOC_Os02g34810	ABA	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	Evidence is provided to show that Na(+) but not Cl(-) is required for enhancing OsAPx8 expression, APx activity, and ABA accumulation in rice roots treated with NaCl
OsAPx8	Os02g0553200	LOC_Os02g34810	ABA	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	Diphenylene iodonium treatment, which is known to inhibit NaCl-induced accumulation of H(2)O(2) in rice roots, did not suppress OsAPx8 induction and ABA accumulation by NaCl
OsAPx8	Os02g0553200	LOC_Os02g34810	chloroplast	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl	Applying semi-quantitative RT-PCR, the mRNA levels were quantified for two cytosolic (OsAPx1 and OsAPx2), two peroxisomal (OsAPx3 and OsAPx4), and four chloroplastic (OsAPx5, OsAPx6, OsAPx7, and OsAPx8) isoforms identified in the rice genome
OsAPx8	Os02g0553200	LOC_Os02g34810	chloroplast	NaCl-induced expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativaL.) seedlings is not associated with osmotic component	Eight types of APx have been described for Oryza sativa: two cytosolic (OsAPx1 and OsAPx2), two putative peroxisomal (OsAPx3 and OsAPx4), and four chloroplastic isoforms (OsAPx5, OsAPx6, OsAPx7, and OsAPx8)
OsAPx8	Os02g0553200	LOC_Os02g34810	root	NaCl-induced expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativaL.) seedlings is not associated with osmotic component	We have recently demonstrated that Na+ but not Cl- is required for the NaCl-induced expression of OsAPx8 in rice roots
OsAPx8	Os02g0553200	LOC_Os02g34810	tolerance	The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.	The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.
OsAPx8	Os02g0553200	LOC_Os02g34810	tolerance	The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.	In addition, OsAPX8 interacted with the susceptibility protein Os8N3/Xa13, and their binding repressed the reaction of OsAPX8 in tolerance to bacterial blight
OsAPx8	Os02g0553200	LOC_Os02g34810	blight	The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.	In addition, OsAPX8 interacted with the susceptibility protein Os8N3/Xa13, and their binding repressed the reaction of OsAPX8 in tolerance to bacterial blight
OsAPx8	Os02g0553200	LOC_Os02g34810	bacterial blight	The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.	The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.
OsAPx8	Os02g0553200	LOC_Os02g34810	bacterial blight	The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.	In addition, OsAPX8 interacted with the susceptibility protein Os8N3/Xa13, and their binding repressed the reaction of OsAPX8 in tolerance to bacterial blight
OsARAF1	Os07g0686900	LOC_Os07g48750	cell wall	Increase in cellulose accumulation and improvement of saccharification by overexpression of arabinofuranosidase in rice	Arabinose content in the cell wall of transgenic rice plants overexpressing individual ARAF full-length cDNA (OsARAF1-FOX and OsARAF3-FOX) decreased 25% and 20% compared to the control and the amount of glucose increased by 28
OsARAF3	Os11g0131900	LOC_Os11g03730	cell wall	Increase in cellulose accumulation and improvement of saccharification by overexpression of arabinofuranosidase in rice	Arabinose content in the cell wall of transgenic rice plants overexpressing individual ARAF full-length cDNA (OsARAF1-FOX and OsARAF3-FOX) decreased 25% and 20% compared to the control and the amount of glucose increased by 28
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	submergence	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	OsARD1 mRNA levels showed a rapid, early and transient increase upon submergence and after treatment with ethylene-releasing compounds
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	phytohormone	Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice	Northern blot and reverse transcriptase-polymerase chain reaction (RT-PCR) analysis revealed that the OsARD expression is regulated by abiotic stresses and phytohormones
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	OsARD1 mRNA levels showed a rapid, early and transient increase upon submergence and after treatment with ethylene-releasing compounds
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	OsARD1 transcripts accumulated in the presence of cycloheximide, an inhibitor of protein synthesis, indicating that OsARD1 is a primary ethylene response gene
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	Promoter analysis suggests that immediate-early regulation of OsARD1 by ethylene may involve an EIN3-like transcription factor
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	OsARD1 is induced by low levels of ethylene
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	abiotic stress	Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice	Northern blot and reverse transcriptase-polymerase chain reaction (RT-PCR) analysis revealed that the OsARD expression is regulated by abiotic stresses and phytohormones
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	abiotic stress	Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice	These results suggest that OsARD may play a role in the metabolism of methionine and ethylene in response to abiotic stresses
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	transcription factor	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	Promoter analysis suggests that immediate-early regulation of OsARD1 by ethylene may involve an EIN3-like transcription factor
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	root	Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice	OsARD was mainly expressed in roots under flood conditions
OsARD|OsARD2	Os03g0161800	LOC_Os03g06620	ethylene	Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice	These results suggest that OsARD may play a role in the metabolism of methionine and ethylene in response to abiotic stresses
OsARD1	Os10g0419400	LOC_Os10g28350	submergence	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	OsARD1 mRNA levels showed a rapid, early and transient increase upon submergence and after treatment with ethylene-releasing compounds
OsARD1	Os10g0419400	LOC_Os10g28350	transcription factor	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	Promoter analysis suggests that immediate-early regulation of OsARD1 by ethylene may involve an EIN3-like transcription factor
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	OsARD1 mRNA levels showed a rapid, early and transient increase upon submergence and after treatment with ethylene-releasing compounds
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	OsARD1 transcripts accumulated in the presence of cycloheximide, an inhibitor of protein synthesis, indicating that OsARD1 is a primary ethylene response gene
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	Promoter analysis suggests that immediate-early regulation of OsARD1 by ethylene may involve an EIN3-like transcription factor
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	OsARD1 is induced by low levels of ethylene
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)	In deepwater rice, submergence enhances ethylene biosynthesis, and ethylene in turn influences the methionine cycle through positive feedback regulation of the acireductone dioxygenase gene OsARD1
OsARD1	Os10g0419400	LOC_Os10g28350	submergence	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)	In deepwater rice, submergence enhances ethylene biosynthesis, and ethylene in turn influences the methionine cycle through positive feedback regulation of the acireductone dioxygenase gene OsARD1
OsARD1	Os10g0419400	LOC_Os10g28350	transcription factor	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Subcellular localization shows that OsARD1 displays strong localization signal in cell nucleus, suggesting OsARD1 may interact with the transcription factors
OsARD1	Os10g0419400	LOC_Os10g28350	submergence	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Here, we report that overexpression of OsARD1 elevates the endogenous ethylene release rate, enhances the tolerance to submergence stress, and reduces the sensitivity to drought, salt, and osmotic stresses in rice
OsARD1	Os10g0419400	LOC_Os10g28350	submergence	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Transgenic plants overexpressing OsARD1 (OsARD1-OE) display fast elongation growth to escape submergence stress
OsARD1	Os10g0419400	LOC_Os10g28350	growth	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Transgenic plants overexpressing OsARD1 (OsARD1-OE) display fast elongation growth to escape submergence stress
OsARD1	Os10g0419400	LOC_Os10g28350	seedling	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.
OsARD1	Os10g0419400	LOC_Os10g28350	salt	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.
OsARD1	Os10g0419400	LOC_Os10g28350	tolerance	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Here, we report that overexpression of OsARD1 elevates the endogenous ethylene release rate, enhances the tolerance to submergence stress, and reduces the sensitivity to drought, salt, and osmotic stresses in rice
OsARD1	Os10g0419400	LOC_Os10g28350	abiotic stress	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Taken together, the results provide the understanding of the function of OsARD1 in ethylene synthesis and abiotic stress response in rice
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	In rice, OsARD1 binds Fe2+ and catalyzes the formation of 2-keto-4-methylthiobutyrate (KMTB) to produce methionine, which is an initial substrate in ethylene synthesis pathway
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Here, we report that overexpression of OsARD1 elevates the endogenous ethylene release rate, enhances the tolerance to submergence stress, and reduces the sensitivity to drought, salt, and osmotic stresses in rice
OsARD1	Os10g0419400	LOC_Os10g28350	ethylene	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Taken together, the results provide the understanding of the function of OsARD1 in ethylene synthesis and abiotic stress response in rice
OsARD1	Os10g0419400	LOC_Os10g28350	salt tolerance	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.
OsARD1	Os10g0419400	LOC_Os10g28350	stress	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Transgenic plants overexpressing OsARD1 (OsARD1-OE) display fast elongation growth to escape submergence stress
OsARD1	Os10g0419400	LOC_Os10g28350	stress	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Taken together, the results provide the understanding of the function of OsARD1 in ethylene synthesis and abiotic stress response in rice
OsARD1	Os10g0419400	LOC_Os10g28350	biotic stress	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Taken together, the results provide the understanding of the function of OsARD1 in ethylene synthesis and abiotic stress response in rice
OsARD1	Os10g0419400	LOC_Os10g28350	stress response	Overexpression of OsARD1 Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Taken together, the results provide the understanding of the function of OsARD1 in ethylene synthesis and abiotic stress response in rice
OsARD4	Os10g0419500	LOC_Os10g28360	root	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.
OsARD4	Os10g0419500	LOC_Os10g28360	root	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	Transgenic ASD16 rice plants engineered for the overexpression of OsARD4 exhibited root growth characteristics similar to those of Nootripathu, including faster radical emergence, more rapid elongation of primary roots, early initiation of crown/lateral roots, and higher root biomass than the non-transgenic plants
OsARD4	Os10g0419500	LOC_Os10g28360	growth	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	Transgenic ASD16 rice plants engineered for the overexpression of OsARD4 exhibited root growth characteristics similar to those of Nootripathu, including faster radical emergence, more rapid elongation of primary roots, early initiation of crown/lateral roots, and higher root biomass than the non-transgenic plants
OsARD4	Os10g0419500	LOC_Os10g28360	development	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.
OsARD4	Os10g0419500	LOC_Os10g28360	architecture	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.
OsARD4	Os10g0419500	LOC_Os10g28360	biomass	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	Transgenic ASD16 rice plants engineered for the overexpression of OsARD4 exhibited root growth characteristics similar to those of Nootripathu, including faster radical emergence, more rapid elongation of primary roots, early initiation of crown/lateral roots, and higher root biomass than the non-transgenic plants
OsARD4	Os10g0419500	LOC_Os10g28360	lateral root	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	Transgenic ASD16 rice plants engineered for the overexpression of OsARD4 exhibited root growth characteristics similar to those of Nootripathu, including faster radical emergence, more rapid elongation of primary roots, early initiation of crown/lateral roots, and higher root biomass than the non-transgenic plants
OsARD4	Os10g0419500	LOC_Os10g28360	primary root	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	Transgenic ASD16 rice plants engineered for the overexpression of OsARD4 exhibited root growth characteristics similar to those of Nootripathu, including faster radical emergence, more rapid elongation of primary roots, early initiation of crown/lateral roots, and higher root biomass than the non-transgenic plants
OsARD4	Os10g0419500	LOC_Os10g28360	root architecture	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought tolerance	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	The stress-related genes activated by OsbZIP46CA1 are largely different from those activated by the other rice ABF/AREB homologs (such as OsbZIP23), further implying the value of OsbZIP46CA1 in genetic engineering of drought tolerance
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought tolerance	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	salinity	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice	A homozygous T-DNA insertional mutant of OsABF2 is more sensitive to salinity, drought, and oxidative stress compared with wild type plants
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	auxin	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes	In addition, the abl1 mutant is hypersensitive to exogenous indole-3-acetic acid, and some ABRE-containing genes related to auxin metabolism or signaling are altered under ABL1 deficiency, suggesting that ABL1 modulates ABA and auxin responses by directly regulating the ABRE-containing genes
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Overexpression of the native OsbZIP46 gene increased ABA sensitivity but had no positive effect on drought resistance
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	These results suggest that OsbZIP46 is a positive regulator of ABA signaling and drought stress tolerance of rice depending on its activation
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	abiotic stress	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	Together, it is suggested that a nuclear PP2C protein OsSIPP2C1 negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	abiotic stress	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	flower	OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis	Due to the dates, OsAREB1 may function as a positive regulator in drought/heat stresses response, but a negative regulator in flowering time in Arabiclopsis
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice	A homozygous T-DNA insertional mutant of OsABF2 is more sensitive to salinity, drought, and oxidative stress compared with wild type plants
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	panicle	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	Together, it is suggested that a nuclear PP2C protein OsSIPP2C1 negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	panicle	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	flowering time	OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis	Due to the dates, OsAREB1 may function as a positive regulator in drought/heat stresses response, but a negative regulator in flowering time in Arabiclopsis
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	OsSIPP2C1 expression was up-regulated by high salt, PEG6000 and exogenous ABA, and enhanced in the abl1 mutant under normal, salt, or drought condition
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	salt	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	OsSIPP2C1 expression was up-regulated by high salt, PEG6000 and exogenous ABA, and enhanced in the abl1 mutant under normal, salt, or drought condition
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	salinity	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes	ABL1 is expressed in various tissues and is induced by the hormones ABA and indole-3-acetic acid and stress conditions including salinity, drought, and osmotic pressure
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Expression of OsbZIP46 was strongly induced by drought, heat, hydrogen peroxide, and abscisic acid (ABA) treatment; however, it was not induced by salt and cold stresses
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Overexpression of the native OsbZIP46 gene increased ABA sensitivity but had no positive effect on drought resistance
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Overexpression of OsbZIP46CA1 in rice significantly increased tolerance to drought and osmotic stresses
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	These results suggest that OsbZIP46 is a positive regulator of ABA signaling and drought stress tolerance of rice depending on its activation
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	The stress-related genes activated by OsbZIP46CA1 are largely different from those activated by the other rice ABF/AREB homologs (such as OsbZIP23), further implying the value of OsbZIP46CA1 in genetic engineering of drought tolerance
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes	ABL1 is expressed in various tissues and is induced by the hormones ABA and indole-3-acetic acid and stress conditions including salinity, drought, and osmotic pressure
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes	The ABL1 deficiency mutant, abl1, shows suppressed ABA responses, and ABL1 expression in the Arabidopsis abi5 mutant rescued the ABA sensitivity
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes	In addition, the abl1 mutant is hypersensitive to exogenous indole-3-acetic acid, and some ABRE-containing genes related to auxin metabolism or signaling are altered under ABL1 deficiency, suggesting that ABL1 modulates ABA and auxin responses by directly regulating the ABRE-containing genes
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis	Trdnsgenic Arabidopsis over-expressing OsAREB1 had different responses to ABA and glucose compared to wild-type plants, which suggest OsAREB1 might have a crucial role in these two signaling pathways
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis	OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	transcription factor	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice	In our current study, we have isolated and characterized a group A bZIP transcription factor in rice, OsABF2 (Oryza sativa ABA-responsive element binding factor 2)
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	transcription factor	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	transcription factor	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes	Here, we report the functional identification of rice (Oryza sativa) ABI5-Like1 (ABL1), which is a basic region/leucine zipper motif transcription factor
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	abiotic stress	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice	Collectively, our present results indicate that OsABF2 functions as a transcriptional regulator that modulates the expression of abiotic stress-responsive genes through an ABA-dependent pathway
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	abiotic stress	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	oxidative	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice	A homozygous T-DNA insertional mutant of OsABF2 is more sensitive to salinity, drought, and oxidative stress compared with wild type plants
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	transcription factor	Purification, crystallization and preliminary X-ray analysis of OsAREB8 from rice, a member of the AREB/ABF family of bZIP transcription factors, in complex with its cognate DNA	Purification, crystallization and preliminary X-ray analysis of OsAREB8 from rice, a member of the AREB/ABF family of bZIP transcription factors, in complex with its cognate DNA
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought resistance	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Overexpression of the native OsbZIP46 gene increased ABA sensitivity but had no positive effect on drought resistance
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis	First, OsAREB1 transgenic plants had higher resistance to drought and heat, and OsAREB1 up-regulated the ABA/stress related gene such as RD29A and RD29B
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis	Due to the dates, OsAREB1 may function as a positive regulator in drought/heat stresses response, but a negative regulator in flowering time in Arabiclopsis
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	drought	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes	ABL1 is expressed in various tissues and is induced by the hormones ABA and indole-3-acetic acid and stress conditions including salinity, drought, and osmotic pressure
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice	In addition, this Osabf2 mutant showed a significantly decreased sensitivity to high levels of ABA at germination and post-germination
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	transcription factor	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	OsbZIP46 is one member of the third subfamily of bZIP transcription factors in rice (Oryza sativa)
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	transcription factor	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	cold stress	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Expression of OsbZIP46 was strongly induced by drought, heat, hydrogen peroxide, and abscisic acid (ABA) treatment; however, it was not induced by salt and cold stresses
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	salt	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	Expression of OsbZIP46 was strongly induced by drought, heat, hydrogen peroxide, and abscisic acid (ABA) treatment; however, it was not induced by salt and cold stresses
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	ABA	SiMYB19 from Foxtail Millet (Setaria italica) Confers Transgenic Rice Tolerance to High Salt Stress in the Field.	 SiMYB19 overexpression promotes abscisic acid (ABA) accumulation in transgenic rice and upregulates the ABA synthesis gene OsNCED3 and the ABA signal transduction pathway-related genes OsPK1 and OsABF2
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	abscisic acid	SiMYB19 from Foxtail Millet (Setaria italica) Confers Transgenic Rice Tolerance to High Salt Stress in the Field.	 SiMYB19 overexpression promotes abscisic acid (ABA) accumulation in transgenic rice and upregulates the ABA synthesis gene OsNCED3 and the ABA signal transduction pathway-related genes OsPK1 and OsABF2
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	signal transduction	SiMYB19 from Foxtail Millet (Setaria italica) Confers Transgenic Rice Tolerance to High Salt Stress in the Field.	 SiMYB19 overexpression promotes abscisic acid (ABA) accumulation in transgenic rice and upregulates the ABA synthesis gene OsNCED3 and the ABA signal transduction pathway-related genes OsPK1 and OsABF2
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	SiMYB19 from Foxtail Millet (Setaria italica) Confers Transgenic Rice Tolerance to High Salt Stress in the Field.	 SiMYB19 overexpression promotes abscisic acid (ABA) accumulation in transgenic rice and upregulates the ABA synthesis gene OsNCED3 and the ABA signal transduction pathway-related genes OsPK1 and OsABF2
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	transcription factor	Abscisic acid promotes auxin biosynthesis to inhibit primary root elongation in rice.	 Further investigation revealed that the transcription factor basic region and leucine zipper 46 (OsbZIP46), involved in ABA signaling, can directly bind to the YUCCA8/rice ethylene-insensitive 7 (OsYUC8/REIN7) promoter to activate its expression, and genetic analysis revealed that OsYUC8/REIN7 is located downstream of OsbZIP46
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	ABA	Abscisic acid promotes auxin biosynthesis to inhibit primary root elongation in rice.	 Further investigation revealed that the transcription factor basic region and leucine zipper 46 (OsbZIP46), involved in ABA signaling, can directly bind to the YUCCA8/rice ethylene-insensitive 7 (OsYUC8/REIN7) promoter to activate its expression, and genetic analysis revealed that OsYUC8/REIN7 is located downstream of OsbZIP46
OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1	Os06g0211200	LOC_Os06g10880	 ABA 	Abscisic acid promotes auxin biosynthesis to inhibit primary root elongation in rice.	 Further investigation revealed that the transcription factor basic region and leucine zipper 46 (OsbZIP46), involved in ABA signaling, can directly bind to the YUCCA8/rice ethylene-insensitive 7 (OsYUC8/REIN7) promoter to activate its expression, and genetic analysis revealed that OsYUC8/REIN7 is located downstream of OsbZIP46
OsARF1	Os11g0523800	LOC_Os11g32110	seed	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	Therefore, the OsARF1 was shown to be essential for growth in vegetative organs and seed development
OsARF1	Os11g0523800	LOC_Os11g32110	auxin	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	OsARF1 is the first full-length member of auxin response factor (ARF) gene family to be cloned from monocot plant
OsARF1	Os11g0523800	LOC_Os11g32110	auxin	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice
OsARF1	Os11g0523800	LOC_Os11g32110	auxin	OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene	A rice homologue of the auxin response factor (ARF) family of transcriptional regulators, OsARF1, was identified
OsARF1	Os11g0523800	LOC_Os11g32110	auxin	OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene	Steady-state levels of OsARF1 mRNA correlated positively with auxin-dependent differential growth: gravitropic stimulation enhanced the amount of OsARF1 transcript in the lower, faster-growing flank accompanied by a decrease in the upper flank of gravitropically stimulated rice coleoptiles
OsARF1	Os11g0523800	LOC_Os11g32110	auxin	OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene	Exogenous auxin up-regulated the steady-state level of OsARF1 mRNA within 15-30 min
OsARF1	Os11g0523800	LOC_Os11g32110	auxin	OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene	Thus, OsARF1 is the first ARF that classifies as an early auxin-responsive gene
OsARF1	Os11g0523800	LOC_Os11g32110	auxin	OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene	OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene
OsARF1	Os11g0523800	LOC_Os11g32110	growth	Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance	In R109 leaves, the OsARF1 gene, which regulates plant growth, was expressed in consistence with growth promotion by P
OsARF1	Os11g0523800	LOC_Os11g32110	growth	Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance	Inversely, OsARF1 expression was coincident with inhibition in growth of HER1 leaves
OsARF1	Os11g0523800	LOC_Os11g32110	growth	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	The AS-OsARF1 plants showed extremely low growth, poor vigor, short curled leaves and tillered but were sterile
OsARF1	Os11g0523800	LOC_Os11g32110	growth	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	Therefore, the OsARF1 was shown to be essential for growth in vegetative organs and seed development
OsARF1	Os11g0523800	LOC_Os11g32110	sterile	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	The AS-OsARF1 plants showed extremely low growth, poor vigor, short curled leaves and tillered but were sterile
OsARF1	Os11g0523800	LOC_Os11g32110	seed development	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	Therefore, the OsARF1 was shown to be essential for growth in vegetative organs and seed development
OsARF1	Os11g0523800	LOC_Os11g32110	tiller	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	The AS-OsARF1 plants showed extremely low growth, poor vigor, short curled leaves and tillered but were sterile
OsARF1	Os11g0523800	LOC_Os11g32110	growth	OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene	Steady-state levels of OsARF1 mRNA correlated positively with auxin-dependent differential growth: gravitropic stimulation enhanced the amount of OsARF1 transcript in the lower, faster-growing flank accompanied by a decrease in the upper flank of gravitropically stimulated rice coleoptiles
OsARF1	Os11g0523800	LOC_Os11g32110	vegetative	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	Using quantitative RT-PCR this study found that, the transcript abundance of OsARF1 was significantly higher in embryonic tissues than in vegetative tissues
OsARF1	Os11g0523800	LOC_Os11g32110	vegetative	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice	Therefore, the OsARF1 was shown to be essential for growth in vegetative organs and seed development
OsARF11	Os04g0664400	LOC_Os04g56850	architecture	DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.	DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.
OsARF11	Os04g0664400	LOC_Os04g56850	brassinosteroid	DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.	DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.
OsARF11	Os04g0664400	LOC_Os04g56850	Brassinosteroid	DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.	DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.
OsARF11	Os04g0664400	LOC_Os04g56850	Brassinosteroid Signaling	DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.	DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.
OsARF11	Os04g0664400	LOC_Os04g56850	resistance	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	Strikingly, our genetic data showed that loss-of-function mutants of osarf12 or osarf16 exhibit reduced resistance whereas osarf11 mutants display enhanced resistance to RDV
OsARF12	Os04g0671900	LOC_Os04g57610	primary root	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	Here, we found a limiting factor of RSA--OsARF12--an auxin response factor whose knockout led to decreased primary root length in rice (Oryza sativa)
OsARF12	Os04g0671900	LOC_Os04g57610	root	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	Here, we found a limiting factor of RSA--OsARF12--an auxin response factor whose knockout led to decreased primary root length in rice (Oryza sativa)
OsARF12	Os04g0671900	LOC_Os04g57610	root	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	* The root elongation zones of osarf12 and osarf12/25, which had lower auxin concentrations, were distinctly shorter than for the wild-type, possibly as a result of decreased expression of auxin synthesis genes OsYUCCAs and auxin efflux carriers OsPINs and OsPGPs
OsARF12	Os04g0671900	LOC_Os04g57610	root	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
OsARF12	Os04g0671900	LOC_Os04g57610	root	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	* The data provide evidence for the biological function of OsARF12, which is implicated in regulating root elongation
OsARF12	Os04g0671900	LOC_Os04g57610	root	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)
OsARF12	Os04g0671900	LOC_Os04g57610	phosphate	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Transcript analysis revealed that Pi-responsive genes--Phosphate starvation (OsIPS)1 and OsIPS2, SYG1/Pho81/XPR1(OsSPX1), Sulfoquinovosyldiacylglycerol 2 (OsSQD2), R2R3 MYB transcription factor (OsMYB2P-1) and Transport Inhibitor Response1 (OsTIR1)--were more abundant in the osarf12 and osarf12/25 mutants under +Pi/-Pi conditions
OsARF12	Os04g0671900	LOC_Os04g57610	phosphate	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)
OsARF12	Os04g0671900	LOC_Os04g57610	auxin	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Here, we report that an auxin response factor, OsARF12, functions in Pi homeostasis
OsARF12	Os04g0671900	LOC_Os04g57610	auxin	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Results from -Pi/1-naphthylphthalamic acid (NPA) treatments, and auxin reporter DR5::GUS staining suggest that root system alteration and Pi-induced auxin response were at least partially controlled by OsARF12
OsARF12	Os04g0671900	LOC_Os04g57610	auxin	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)
OsARF12	Os04g0671900	LOC_Os04g57610	auxin	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	Here, we found a limiting factor of RSA--OsARF12--an auxin response factor whose knockout led to decreased primary root length in rice (Oryza sativa)
OsARF12	Os04g0671900	LOC_Os04g57610	auxin	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	* OsARF12 as a transcription activator can facilitate the expression of the auxin response element DR5::GFP, and OsARF12 was inhibited by osa-miRNA167d by transient expression in tobacco and rice callus
OsARF12	Os04g0671900	LOC_Os04g57610	auxin	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	* The root elongation zones of osarf12 and osarf12/25, which had lower auxin concentrations, were distinctly shorter than for the wild-type, possibly as a result of decreased expression of auxin synthesis genes OsYUCCAs and auxin efflux carriers OsPINs and OsPGPs
OsARF12	Os04g0671900	LOC_Os04g57610	auxin	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)
OsARF12	Os04g0671900	LOC_Os04g57610	iron	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
OsARF12	Os04g0671900	LOC_Os04g57610	iron	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)
OsARF12	Os04g0671900	LOC_Os04g57610	homeostasis	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Here, we report that an auxin response factor, OsARF12, functions in Pi homeostasis
OsARF12	Os04g0671900	LOC_Os04g57610	homeostasis	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	These findings enrich our understanding of the biological functions of OsARF12, which also acts in regulating Pi homeostasis
OsARF12	Os04g0671900	LOC_Os04g57610	homeostasis	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)
OsARF12	Os04g0671900	LOC_Os04g57610	mitochondria	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
OsARF12	Os04g0671900	LOC_Os04g57610	transporter	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Measurement of element content, quantitative reverse transcription polymerase chain reaction analysis and acid phosphatases (APases) activity assay showed that the osarf12 mutant and osarf12/25 double mutant with P-intoxicated phenotypes had higher P concentrations, up-regulation of the Pi transporter encoding genes and increased APase activity under Pi-sufficient/-deficient (+Pi/-Pi, 0
OsARF12	Os04g0671900	LOC_Os04g57610	transcription factor	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Transcript analysis revealed that Pi-responsive genes--Phosphate starvation (OsIPS)1 and OsIPS2, SYG1/Pho81/XPR1(OsSPX1), Sulfoquinovosyldiacylglycerol 2 (OsSQD2), R2R3 MYB transcription factor (OsMYB2P-1) and Transport Inhibitor Response1 (OsTIR1)--were more abundant in the osarf12 and osarf12/25 mutants under +Pi/-Pi conditions
OsARF12	Os04g0671900	LOC_Os04g57610	transporter	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
OsARF12	Os04g0671900	LOC_Os04g57610	 pi 	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Here, we report that an auxin response factor, OsARF12, functions in Pi homeostasis
OsARF12	Os04g0671900	LOC_Os04g57610	 pi 	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Measurement of element content, quantitative reverse transcription polymerase chain reaction analysis and acid phosphatases (APases) activity assay showed that the osarf12 mutant and osarf12/25 double mutant with P-intoxicated phenotypes had higher P concentrations, up-regulation of the Pi transporter encoding genes and increased APase activity under Pi-sufficient/-deficient (+Pi/-Pi, 0
OsARF12	Os04g0671900	LOC_Os04g57610	 pi 	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	These findings enrich our understanding of the biological functions of OsARF12, which also acts in regulating Pi homeostasis
OsARF12	Os04g0671900	LOC_Os04g57610	root	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Results from -Pi/1-naphthylphthalamic acid (NPA) treatments, and auxin reporter DR5::GUS staining suggest that root system alteration and Pi-induced auxin response were at least partially controlled by OsARF12
OsARF12	Os04g0671900	LOC_Os04g57610	resistance	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	 Strikingly, our genetic data showed that loss-of-function mutants of osarf12 or osarf16 exhibit reduced resistance whereas osarf11 mutants display enhanced resistance to RDV
OsARF12	Os04g0671900	LOC_Os04g57610	resistance	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	 In turn, OsARF12 activates the down-stream OsWRKY13 expression through direct binding to its promoter, loss-of-function mutants of oswrky13 exhibit reduced resistance
OsARF12	Os04g0671900	LOC_Os04g57610	flower opening	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
OsARF12	Os04g0671900	LOC_Os04g57610	stigma size	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
OsARF12	Os04g0671900	LOC_Os04g57610	grain	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Further analysis indicates that OsARF12 is the major mediator of miR167 in regulating rice grain filling
OsARF12	Os04g0671900	LOC_Os04g57610	grain	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Expectedly, over expressing OsARF12 could resemble the phenotype of STTM/MIM167 plants with respect to grain weight and grain filling rate
OsARF12	Os04g0671900	LOC_Os04g57610	grain	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Flow cytometric analysis in young panicles of plants overexpressing OsARF12 and cell number examination of cdkf;2 mutants verify that OsARF12 positively regulates grain filling and grain size by targeting OsCDKF;2
OsARF12	Os04g0671900	LOC_Os04g57610	grain size	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Flow cytometric analysis in young panicles of plants overexpressing OsARF12 and cell number examination of cdkf;2 mutants verify that OsARF12 positively regulates grain filling and grain size by targeting OsCDKF;2
OsARF12	Os04g0671900	LOC_Os04g57610	brassinosteroid	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsARF12	Os04g0671900	LOC_Os04g57610	BR	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsARF12	Os04g0671900	LOC_Os04g57610	Brassinosteroid	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsARF12	Os04g0671900	LOC_Os04g57610	BR signaling	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsARF12	Os04g0671900	LOC_Os04g57610	auxin	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsARF12	Os04g0671900	LOC_Os04g57610	grain filling	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Further analysis indicates that OsARF12 is the major mediator of miR167 in regulating rice grain filling
OsARF12	Os04g0671900	LOC_Os04g57610	grain filling	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Expectedly, over expressing OsARF12 could resemble the phenotype of STTM/MIM167 plants with respect to grain weight and grain filling rate
OsARF12	Os04g0671900	LOC_Os04g57610	grain filling	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Flow cytometric analysis in young panicles of plants overexpressing OsARF12 and cell number examination of cdkf;2 mutants verify that OsARF12 positively regulates grain filling and grain size by targeting OsCDKF;2
OsARF12	Os04g0671900	LOC_Os04g57610	grain weight	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Expectedly, over expressing OsARF12 could resemble the phenotype of STTM/MIM167 plants with respect to grain weight and grain filling rate
OsARF12	Os04g0671900	LOC_Os04g57610	 BR 	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsARF12	Os04g0671900	LOC_Os04g57610	young panicles	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Flow cytometric analysis in young panicles of plants overexpressing OsARF12 and cell number examination of cdkf;2 mutants verify that OsARF12 positively regulates grain filling and grain size by targeting OsCDKF;2
OsARF16	Os06g0196700	LOC_Os06g09660	growth	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	In -Pi conditions, the shoot biomass of osarf16 was slightly reduced, and neither root growth nor iron content was induced, indicating that the knockout of OsARF16 led to loss of response to Pi deficiency in rice
OsARF16	Os06g0196700	LOC_Os06g09660	phosphate	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	Six phosphate starvation-induced genes (PSIs) were less induced by -Pi in osarf16 and these trends were similar to a knockdown mutant of OsPHR2 or AtPHR1, which was a key regulator under -Pi
OsARF16	Os06g0196700	LOC_Os06g09660	phosphate	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)
OsARF16	Os06g0196700	LOC_Os06g09660	auxin	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	Here, we show that OsARF16, an auxin response factor, functions in both auxin and -Pi responses in rice (Oryza sativa L
OsARF16	Os06g0196700	LOC_Os06g09660	auxin	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	The knockout of OsARF16 led to primary roots (PR), lateral roots (LR) and root hair losing sensitivity to auxin and -Pi response
OsARF16	Os06g0196700	LOC_Os06g09660	auxin	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	These data first reveal the biological function of OsARF16, provide novel evidence of a linkage between auxin and -Pi responses and facilitate the development of new strategies for the efficient utilization of Pi in rice
OsARF16	Os06g0196700	LOC_Os06g09660	auxin	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)
OsARF16	Os06g0196700	LOC_Os06g09660	iron	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	In -Pi conditions, the shoot biomass of osarf16 was slightly reduced, and neither root growth nor iron content was induced, indicating that the knockout of OsARF16 led to loss of response to Pi deficiency in rice
OsARF16	Os06g0196700	LOC_Os06g09660	shoot	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	In -Pi conditions, the shoot biomass of osarf16 was slightly reduced, and neither root growth nor iron content was induced, indicating that the knockout of OsARF16 led to loss of response to Pi deficiency in rice
OsARF16	Os06g0196700	LOC_Os06g09660	root hair	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	The knockout of OsARF16 led to primary roots (PR), lateral roots (LR) and root hair losing sensitivity to auxin and -Pi response
OsARF16	Os06g0196700	LOC_Os06g09660	biomass	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	In -Pi conditions, the shoot biomass of osarf16 was slightly reduced, and neither root growth nor iron content was induced, indicating that the knockout of OsARF16 led to loss of response to Pi deficiency in rice
OsARF16	Os06g0196700	LOC_Os06g09660	pi	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	In -Pi conditions, the shoot biomass of osarf16 was slightly reduced, and neither root growth nor iron content was induced, indicating that the knockout of OsARF16 led to loss of response to Pi deficiency in rice
OsARF16	Os06g0196700	LOC_Os06g09660	pi	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	These data first reveal the biological function of OsARF16, provide novel evidence of a linkage between auxin and -Pi responses and facilitate the development of new strategies for the efficient utilization of Pi in rice
OsARF16	Os06g0196700	LOC_Os06g09660	transcription factor	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)
OsARF16	Os06g0196700	LOC_Os06g09660	lateral root	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	The knockout of OsARF16 led to primary roots (PR), lateral roots (LR) and root hair losing sensitivity to auxin and -Pi response
OsARF16	Os06g0196700	LOC_Os06g09660	primary root	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	The knockout of OsARF16 led to primary roots (PR), lateral roots (LR) and root hair losing sensitivity to auxin and -Pi response
OsARF16	Os06g0196700	LOC_Os06g09660	root	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	The knockout of OsARF16 led to primary roots (PR), lateral roots (LR) and root hair losing sensitivity to auxin and -Pi response
OsARF16	Os06g0196700	LOC_Os06g09660	root	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	In -Pi conditions, the shoot biomass of osarf16 was slightly reduced, and neither root growth nor iron content was induced, indicating that the knockout of OsARF16 led to loss of response to Pi deficiency in rice
OsARF16	Os06g0196700	LOC_Os06g09660	phosphate	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)
OsARF16	Os06g0196700	LOC_Os06g09660	phosphate transport	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)
OsARF16	Os06g0196700	LOC_Os06g09660	phosphate signaling	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)
OsARF16	Os06g0196700	LOC_Os06g09660	cytokinin	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)
OsARF16	Os06g0196700	LOC_Os06g09660	cytokinin	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)	In this study, we found that OsARF16 is required for the cytokinin response and is involved in the negative regulation of Pi uptake and Pi signaling by cytokinin.
OsARF16	Os06g0196700	LOC_Os06g09660	cytokinin response	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)	In this study, we found that OsARF16 is required for the cytokinin response and is involved in the negative regulation of Pi uptake and Pi signaling by cytokinin.
OsARF16	Os06g0196700	LOC_Os06g09660	Pi uptake	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)	In this study, we found that OsARF16 is required for the cytokinin response and is involved in the negative regulation of Pi uptake and Pi signaling by cytokinin.
OsARF16	Os06g0196700	LOC_Os06g09660	Pi signaling	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.)	In this study, we found that OsARF16 is required for the cytokinin response and is involved in the negative regulation of Pi uptake and Pi signaling by cytokinin.
OsARF16	Os06g0196700	LOC_Os06g09660	root	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Most Fe-deficient symptoms could be partially restored in the osarf16 mutant, including dwarfism, photosynthesis decline, a reduction in iron content and root system architecture (RSA) regulation
OsARF16	Os06g0196700	LOC_Os06g09660	architecture	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Most Fe-deficient symptoms could be partially restored in the osarf16 mutant, including dwarfism, photosynthesis decline, a reduction in iron content and root system architecture (RSA) regulation
OsARF16	Os06g0196700	LOC_Os06g09660	auxin	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Our results reveal a new biological function for OsARF16 and provide important information on how ARF-medicated auxin signaling affects iron signaling and the iron deficiency response
OsARF16	Os06g0196700	LOC_Os06g09660	photosynthesis	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Most Fe-deficient symptoms could be partially restored in the osarf16 mutant, including dwarfism, photosynthesis decline, a reduction in iron content and root system architecture (RSA) regulation
OsARF16	Os06g0196700	LOC_Os06g09660	iron	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	We found that OsARF16 was involved in the iron deficiency response and the induction of iron deficiency response genes
OsARF16	Os06g0196700	LOC_Os06g09660	iron	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Most Fe-deficient symptoms could be partially restored in the osarf16 mutant, including dwarfism, photosynthesis decline, a reduction in iron content and root system architecture (RSA) regulation
OsARF16	Os06g0196700	LOC_Os06g09660	iron	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Furthermore, the qRT-PCR data indicated that the induction of Fe-deficiency response genes by iron deficiency was more compromised in the osarf16 mutant than in Nipponbare
OsARF16	Os06g0196700	LOC_Os06g09660	iron	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Our results reveal a new biological function for OsARF16 and provide important information on how ARF-medicated auxin signaling affects iron signaling and the iron deficiency response
OsARF16	Os06g0196700	LOC_Os06g09660	root system architecture	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Most Fe-deficient symptoms could be partially restored in the osarf16 mutant, including dwarfism, photosynthesis decline, a reduction in iron content and root system architecture (RSA) regulation
OsARF16	Os06g0196700	LOC_Os06g09660	resistance	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	Strikingly, our genetic data showed that loss-of-function mutants of osarf12 or osarf16 exhibit reduced resistance whereas osarf11 mutants display enhanced resistance to RDV
OsARF16	Os06g0196700	LOC_Os06g09660	leaf	Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice	Transformation with modified OsARF11, OsARF16 and OsWOX3A genomic DNA lacking uORFs rescued the narrow leaf phenotype of nal21 to a better extent than transformation with their native genomic DNA, implying that RPS3A could regulate translation of ARFs and WOX3A through uORFs
OsARF17	Os06g0677800	LOC_Os06g46410	leaf	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	 Being consistent, transgenic plants with OsIAA12 overexpression or deficiency of OsARF17 which interacts with OsIAA12 do present enlarged leaf inclination
OsARF17	Os06g0677800	LOC_Os06g46410	auxin	Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.	Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.
OsARF17	Os06g0677800	LOC_Os06g46410	auxin	Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.	 This suggests that OsARF17 plays a crucial role in plant defense against different types of plant viruses, and that these viruses use independently evolved viral proteins to target this key component of auxin signaling and facilitate infection
OsARF17	Os06g0677800	LOC_Os06g46410	resistance	Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.	 OsARF17 also confers resistance to a cytorhabdovirus and was directly targeted by one of the viral proteins
OsARF17	Os06g0677800	LOC_Os06g46410	defense	Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.	 This suggests that OsARF17 plays a crucial role in plant defense against different types of plant viruses, and that these viruses use independently evolved viral proteins to target this key component of auxin signaling and facilitate infection
OsARF17	Os06g0677800	LOC_Os06g46410	auxin response	Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.	Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.
OsARF17	Os06g0677800	LOC_Os06g46410	R protein	Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.	 We show here that two fijiviruses (double-stranded RNA viruses) utilize their proteins to disturb the dimerization of OsARF17 and repress its transcriptional activation ability, while a tenuivirus (negative-sense single-stranded RNA virus) directly interferes with the DNA binding activity of OsARF17
OsARF17	Os06g0677800	LOC_Os06g46410	flower opening	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
OsARF17	Os06g0677800	LOC_Os06g46410	stigma size	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
OsARF17	Os06g0677800	LOC_Os06g46410	transcription factor	Transcriptome analysis of auxin transcription factor OsARF17-mediated rice stripe mosaic virus response in rice.	 RT-qPCR assays showed that the induction of plant defense-related genes, such as WRKY transcription factors, OsAHT2 and OsDR8, and JA-related genes, were significantly suppressed in OsARF17 mutants in response to RSMV
OsARF17	Os06g0677800	LOC_Os06g46410	auxin	Transcriptome analysis of auxin transcription factor OsARF17-mediated rice stripe mosaic virus response in rice.	 Our previous studies have indicated that auxin response factor OsARF17 plays a crucial role in plant defense against diverse rice viruses
OsARF17	Os06g0677800	LOC_Os06g46410	defense	Transcriptome analysis of auxin transcription factor OsARF17-mediated rice stripe mosaic virus response in rice.	 Our previous studies have indicated that auxin response factor OsARF17 plays a crucial role in plant defense against diverse rice viruses
OsARF17	Os06g0677800	LOC_Os06g46410	defense	Transcriptome analysis of auxin transcription factor OsARF17-mediated rice stripe mosaic virus response in rice.	 METHODS: Utilizing a comparative transcriptome analysis of Rice stripe mosaic virus (RSMV)-inoculated OsARF17 mutant rice plants, to further elucidate the molecular mechanism of OsARF17 in antiviral defense pathway
OsARF17	Os06g0677800	LOC_Os06g46410	auxin response	Transcriptome analysis of auxin transcription factor OsARF17-mediated rice stripe mosaic virus response in rice.	 Our previous studies have indicated that auxin response factor OsARF17 plays a crucial role in plant defense against diverse rice viruses
OsARF17	Os06g0677800	LOC_Os06g46410	signal transduction	Transcriptome analysis of auxin transcription factor OsARF17-mediated rice stripe mosaic virus response in rice.	 RESULTS: KEGG enrichment analyses showed that the down-regulated differentially expressed genes (DEGs) belonged to plant-pathogen interaction and plant hormone signal transduction pathways were markedly enriched in OsARF17 mutants under RSMV inoculation
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	callus	OsHDA710-mediated Histone Deacetylation Regulates Callus Formation of Rice Mature Embryo	 Meanwhile, the transcriptional repressors OsARF18 and OsARF22 were upregulated in the callus of hda710
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	callus	OsHDA710-mediated Histone Deacetylation Regulates Callus Formation of Rice Mature Embryo	 The ChIP-qPCR analysis demonstrated that the callus of hda710 exhibited enhanced histone H3 acetylation levels at the chromatin regions of OsARF18 and OsARF22
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	callus	OsHDA710-mediated Histone Deacetylation Regulates Callus Formation of Rice Mature Embryo	 Additionally, overexpression of OsARF18 decreased the transcription of downstream genes PLT1 and PLT2, and inhibited callus formation of mature embryo
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	nitrogen	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	 Loss of RST1 function increased the expression of OsAS1 and improved nitrogen (N) utilization by promoting asparagine production and avoiding excess ammonium (NH(4)(+)) accumulation
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	grain	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	auxin	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	 Map-based cloning revealed that the gene RST1 encoded an auxin response factor (OsARF18)
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	domestication	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	 RST1 was undergoing directional selection during domestication
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	grain yield	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	map-based cloning	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	 Map-based cloning revealed that the gene RST1 encoded an auxin response factor (OsARF18)
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	salt	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	tolerance	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	yield	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	salt tolerance	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	auxin response	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	 Map-based cloning revealed that the gene RST1 encoded an auxin response factor (OsARF18)
OsARF18|RST1	Os06g0685700	LOC_Os06g47150	transcriptional repressor	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.
OsARF19	Os06g0702600	LOC_Os06g48950	auxin	The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.	OsARF19 is expressed in various organs including lamina joint and strongly induced by auxin and BR
OsARF19	Os06g0702600	LOC_Os06g48950	brassinosteroid	The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.	Chromatin immunoprecipitation (ChIP) and yeast one-hybrid assays demonstrate that OsARF19 binds to the promoter of OsGH3-5 and brassinosteroid insensitive 1 (OsBRI1) directing their expression
OsARF19	Os06g0702600	LOC_Os06g48950	lamina	The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.	OsARF19 is expressed in various organs including lamina joint and strongly induced by auxin and BR
OsARF19	Os06g0702600	LOC_Os06g48950	lamina joint	The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.	OsARF19 is expressed in various organs including lamina joint and strongly induced by auxin and BR
OsARF2|OsARF4	Os01g0927600	LOC_Os01g70270	auxin	Auxin regulates source-sink carbohydrate partitioning and reproductive organ development in rice	We demonstrate that OsARF2 regulates the expression of OsSUT1 through direct binding to the sugar-responsive elements (SuREs) in the OsSUT1 promoter and that OsARF18 represses the expression of OsARF2 and OsSUT1 via direct binding to the auxin-responsive element (AuxRE) or SuRE in their promoters, respectively.
OsARF2|OsARF4	Os01g0927600	LOC_Os01g70270	seed-setting	Auxin regulates source-sink carbohydrate partitioning and reproductive organ development in rice	Furthermore, overexpression of OsSUT1 in the dao and Osarf2 mutant backgrounds could largely rescue the spikelets' opening and seed-setting defects.
OsARF21	Os08g0520500	LOC_Os08g40900	grain	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	 To investigate how rice grain yield traits are regulated by auxin signaling pathways and to facilitate their application in rice improvement, we validated the functional relationships among regulatory genes such as OsIAA10, OsSK41, and OsARF21 that are involved in one of the auxin (OsIAA10) signaling pathways
OsARF21	Os08g0520500	LOC_Os08g40900	grain	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	 Based on the results, we constructed a model that showed how grain yield traits were regulated by OsIAA10 and OsTIR1, OsAFB2, and OsSK41 and OsmiR393 in the OsSK41-OsIAA10-OsARF module and by OsARF21 in the transcriptional regulation of downstream auxin response genes in the OsSK41-OsIAA10-OsARF module
OsARF21	Os08g0520500	LOC_Os08g40900	auxin	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	 To investigate how rice grain yield traits are regulated by auxin signaling pathways and to facilitate their application in rice improvement, we validated the functional relationships among regulatory genes such as OsIAA10, OsSK41, and OsARF21 that are involved in one of the auxin (OsIAA10) signaling pathways
OsARF21	Os08g0520500	LOC_Os08g40900	auxin	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	 Based on the results, we constructed a model that showed how grain yield traits were regulated by OsIAA10 and OsTIR1, OsAFB2, and OsSK41 and OsmiR393 in the OsSK41-OsIAA10-OsARF module and by OsARF21 in the transcriptional regulation of downstream auxin response genes in the OsSK41-OsIAA10-OsARF module
OsARF21	Os08g0520500	LOC_Os08g40900	grain yield	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	 To investigate how rice grain yield traits are regulated by auxin signaling pathways and to facilitate their application in rice improvement, we validated the functional relationships among regulatory genes such as OsIAA10, OsSK41, and OsARF21 that are involved in one of the auxin (OsIAA10) signaling pathways
OsARF21	Os08g0520500	LOC_Os08g40900	grain yield	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	 Based on the results, we constructed a model that showed how grain yield traits were regulated by OsIAA10 and OsTIR1, OsAFB2, and OsSK41 and OsmiR393 in the OsSK41-OsIAA10-OsARF module and by OsARF21 in the transcriptional regulation of downstream auxin response genes in the OsSK41-OsIAA10-OsARF module
OsARF21	Os08g0520500	LOC_Os08g40900	yield	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	 To investigate how rice grain yield traits are regulated by auxin signaling pathways and to facilitate their application in rice improvement, we validated the functional relationships among regulatory genes such as OsIAA10, OsSK41, and OsARF21 that are involved in one of the auxin (OsIAA10) signaling pathways
OsARF21	Os08g0520500	LOC_Os08g40900	yield	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	 Based on the results, we constructed a model that showed how grain yield traits were regulated by OsIAA10 and OsTIR1, OsAFB2, and OsSK41 and OsmiR393 in the OsSK41-OsIAA10-OsARF module and by OsARF21 in the transcriptional regulation of downstream auxin response genes in the OsSK41-OsIAA10-OsARF module
OsARF21	Os08g0520500	LOC_Os08g40900	auxin response	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	 Based on the results, we constructed a model that showed how grain yield traits were regulated by OsIAA10 and OsTIR1, OsAFB2, and OsSK41 and OsmiR393 in the OsSK41-OsIAA10-OsARF module and by OsARF21 in the transcriptional regulation of downstream auxin response genes in the OsSK41-OsIAA10-OsARF module
OsARF22	Os10g0479900	LOC_Os10g33940	callus	OsHDA710-mediated Histone Deacetylation Regulates Callus Formation of Rice Mature Embryo.	Meanwhile, the transcriptional repressors OsARF18 and OsARF22 were upregulated in the callus of hda710
OsARF22	Os10g0479900	LOC_Os10g33940	callus	OsHDA710-mediated Histone Deacetylation Regulates Callus Formation of Rice Mature Embryo.	The ChIP-qPCR analysis demonstrated that the callus of hda710 exhibited enhanced histone H3 acetylation levels at the chromatin regions  of OsARF18 and OsARF22
OsARF24	Os12g0479400	LOC_Os12g29520	auxin	Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth	Moreover, RMD expression is directly regulated by heterodimerized O. sativa auxin response factor 23 (OsARF23) and OsARF24, providing evidence that auxin modulates the orientation of F-actin arrays through RMD.
OsARF24	Os12g0479400	LOC_Os12g29520	auxin response	Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth	Moreover, RMD expression is directly regulated by heterodimerized O. sativa auxin response factor 23 (OsARF23) and OsARF24, providing evidence that auxin modulates the orientation of F-actin arrays through RMD.
OsARF25	Os12g0613700	LOC_Os12g41950	flower opening	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
OsARF25	Os12g0613700	LOC_Os12g41950	stigma size	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice	miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice
OsARG	Os04g0106300	LOC_Os04g01590	mitochondria	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice	The OsARG protein was localized in the mitochondria, consistent with other arginases
OsARG	Os04g0106300	LOC_Os04g01590	grain	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice
OsARG	Os04g0106300	LOC_Os04g01590	nitrogen	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice	The phenotype was partially corrected supplying exogenous nitrogen, and fully corrected by a wild type OsARG transgene
OsARG	Os04g0106300	LOC_Os04g01590	nitrogen	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice	Our results suggest that the arginase encoded by OsARG, a key enzyme in Arg catabolism, plays a critical role during panicle development, especially under conditions of insufficient exogenous nitrogen
OsARG	Os04g0106300	LOC_Os04g01590	panicle	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice	OsARG, ubiquitously expressed in various organs, was more strongly expressed in the developing panicles
OsARG	Os04g0106300	LOC_Os04g01590	panicle	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice	Our results suggest that the arginase encoded by OsARG, a key enzyme in Arg catabolism, plays a critical role during panicle development, especially under conditions of insufficient exogenous nitrogen
OsARG	Os04g0106300	LOC_Os04g01590	panicle	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice
OsARG	Os04g0106300	LOC_Os04g01590	seedlings	Expression of the Rice Arginase Gene OsARG in Cotton Influences the Morphology and Nitrogen Transition of Seedlings.	The nitric oxide content and the morphology of ARG-26 and ARG-38 seedlings were both affected by expression of the OsARG gene
OsARG	Os04g0106300	LOC_Os04g01590	nitrogen	Expression of the Rice Arginase Gene OsARG in Cotton Influences the Morphology and Nitrogen Transition of Seedlings.	Expression of the Rice Arginase Gene OsARG in Cotton Influences the Morphology and Nitrogen Transition of Seedlings.
OsARG	Os04g0106300	LOC_Os04g01590	nitrogen	Expression of the Rice Arginase Gene OsARG in Cotton Influences the Morphology and Nitrogen Transition of Seedlings.	The unique rice arginase gene OsARG is known to affect nitrogen use efficiency and is also associated with higher yields in rice
OsARGOS	Os04g0444300	LOC_Os04g36670	seedlings	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	OsARGOS transcripts were detected in most of rice tissues, particularly in the young tissues, and its expression was induced in rice seedlings by the application of either auxin or cytokinin
OsARGOS	Os04g0444300	LOC_Os04g36670	growth	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	The expression of OsARGOS in Arabidopsis may activate the signaling pathways that control cell proliferation and cell expansion during the course of plant growth and development
OsARGOS	Os04g0444300	LOC_Os04g36670	auxin	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	OsARGOS transcripts were detected in most of rice tissues, particularly in the young tissues, and its expression was induced in rice seedlings by the application of either auxin or cytokinin
OsARGOS	Os04g0444300	LOC_Os04g36670	development	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	The expression of OsARGOS in Arabidopsis may activate the signaling pathways that control cell proliferation and cell expansion during the course of plant growth and development
OsARGOS	Os04g0444300	LOC_Os04g36670	cell division	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.
OsARGOS	Os04g0444300	LOC_Os04g36670	cytokinin	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	OsARGOS transcripts were detected in most of rice tissues, particularly in the young tissues, and its expression was induced in rice seedlings by the application of either auxin or cytokinin
OsARGOS	Os04g0444300	LOC_Os04g36670	plant growth	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	The expression of OsARGOS in Arabidopsis may activate the signaling pathways that control cell proliferation and cell expansion during the course of plant growth and development
OsARGOS	Os04g0444300	LOC_Os04g36670	biomass	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	Since the expression of OsARGOS causes organ enlargement, the potential application of this gene through genetic engineering may significantly improve the production of biomass in agricultural practice
OsARGOS	Os04g0444300	LOC_Os04g36670	cell proliferation	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	The expression of OsARGOS in Arabidopsis may activate the signaling pathways that control cell proliferation and cell expansion during the course of plant growth and development
OsARGOS	Os04g0444300	LOC_Os04g36670	organ size	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.
OsARGOS	Os04g0444300	LOC_Os04g36670	organ size	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	We also transferred the OsARGOS gene to rice, but the transgenic plants did not show any changes in organ size compared with the control plants
OsARGOS	Os04g0444300	LOC_Os04g36670	organ size	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	It is likely that the function of OsARGOS in organ size control depends on other size regulators in rice
OsARID3	Os06g0622300	LOC_Os06g41730	shoot	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Disruption of OsARID3 leads to defective SAM, early seedling lethality, and impaired capacity of in vitro shoot regeneration
OsARID3	Os06g0622300	LOC_Os06g41730	seedling	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Disruption of OsARID3 leads to defective SAM, early seedling lethality, and impaired capacity of in vitro shoot regeneration
OsARID3	Os06g0622300	LOC_Os06g41730	development	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	We conclude that OsARID3 is an AT-rich specific DNA-binding protein and that it plays a major role in SAM development in rice
OsARID3	Os06g0622300	LOC_Os06g41730	auxin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	We show that the expression levels of several KNOXI genes and the biosynthetic genes for auxin and cytokinin are significantly altered in the Osarid3 mutant calli
OsARID3	Os06g0622300	LOC_Os06g41730	auxin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Moreover, we determine that auxin concentrations are increased whereas cytokinin levels are decreased in Osarid3 calli
OsARID3	Os06g0622300	LOC_Os06g41730	auxin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Furthermore, our chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7
OsARID3	Os06g0622300	LOC_Os06g41730	cytokinin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	We show that the expression levels of several KNOXI genes and the biosynthetic genes for auxin and cytokinin are significantly altered in the Osarid3 mutant calli
OsARID3	Os06g0622300	LOC_Os06g41730	cytokinin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Moreover, we determine that auxin concentrations are increased whereas cytokinin levels are decreased in Osarid3 calli
OsARID3	Os06g0622300	LOC_Os06g41730	cytokinin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Furthermore, our chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7
OsARID3	Os06g0622300	LOC_Os06g41730	shoot	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Disruption of OsARID3 leads to a defective SAM, early seedling lethality, and impaired capacity of in<U+00A0>vitro shoot regeneration
OsARID3	Os06g0622300	LOC_Os06g41730	seedling	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Disruption of OsARID3 leads to a defective SAM, early seedling lethality, and impaired capacity of in<U+00A0>vitro shoot regeneration
OsARID3	Os06g0622300	LOC_Os06g41730	development	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	We conclude that OsARID3 is an AT-rich specific DNA-binding protein and that it plays a major role in SAM development in rice
OsARID3	Os06g0622300	LOC_Os06g41730	auxin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	We show that the expression levels of several KNOXI genes and the biosynthetic genes for auxin and cytokinin are significantly altered in the Osarid3 mutant calli
OsARID3	Os06g0622300	LOC_Os06g41730	auxin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Moreover, we determine that auxin concentrations are increased, whereas cytokinin levels are decreased, in Osarid3 calli
OsARID3	Os06g0622300	LOC_Os06g41730	auxin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Furthermore, chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7
OsARID3	Os06g0622300	LOC_Os06g41730	cytokinin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	We show that the expression levels of several KNOXI genes and the biosynthetic genes for auxin and cytokinin are significantly altered in the Osarid3 mutant calli
OsARID3	Os06g0622300	LOC_Os06g41730	cytokinin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Moreover, we determine that auxin concentrations are increased, whereas cytokinin levels are decreased, in Osarid3 calli
OsARID3	Os06g0622300	LOC_Os06g41730	cytokinin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Furthermore, chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7
OsARP|OsCTP	Os02g0465900	LOC_Os02g26700	flower	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco	The OsARP gene was introduced into tobacco under the control of the cauliflower mosaic virus 35S promoter
OsARP|OsCTP	Os02g0465900	LOC_Os02g26700	photosynthesis	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco	Overexpression of OsARP in transgenic tobacco plants resulted in salt tolerance, and the plants had a higher rate of photosynthesis and effective PSII photon yield when compared with the wild type
OsARP|OsCTP	Os02g0465900	LOC_Os02g26700	yield	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco	Overexpression of OsARP in transgenic tobacco plants resulted in salt tolerance, and the plants had a higher rate of photosynthesis and effective PSII photon yield when compared with the wild type
OsARP|OsCTP	Os02g0465900	LOC_Os02g26700	salt tolerance	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco	Overexpression of OsARP in transgenic tobacco plants resulted in salt tolerance, and the plants had a higher rate of photosynthesis and effective PSII photon yield when compared with the wild type
OsARP|OsCTP	Os02g0465900	LOC_Os02g26700	salt tolerance	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco
OsARP|OsCTP	Os02g0465900	LOC_Os02g26700	salt	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco	Overexpression of OsARP in transgenic tobacco plants resulted in salt tolerance, and the plants had a higher rate of photosynthesis and effective PSII photon yield when compared with the wild type
OsARP|OsCTP	Os02g0465900	LOC_Os02g26700	salt	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco
OsARP6	Os01g0269900	LOC_Os01g16414	chloroplast	Rice H2A.Z negatively Regulates Genes Responsive to Nutrient Starvation but Promotes Expression of Key Housekeeping Genes.	This was especially evident upon OsARP6 knockdown, which resulted in a number of genes linked to chloroplast function, that contained decreases in H2A
OsARP6	Os01g0269900	LOC_Os01g16414	leaf	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	The osarp6 knockout mutants displayed pleiotropic phenotypic alterations in vegetative and reproductive traits, including semi-dwarf phenotype, lower tillers number, short leaf length, changes in spikelet morphology, and seed abortion
OsARP6	Os01g0269900	LOC_Os01g16414	plant development	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	Together, these results suggest that OsARP6 is involved in rice plant development, and H2A
OsARP6	Os01g0269900	LOC_Os01g16414	spikelet	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	The osarp6 knockout mutants displayed pleiotropic phenotypic alterations in vegetative and reproductive traits, including semi-dwarf phenotype, lower tillers number, short leaf length, changes in spikelet morphology, and seed abortion
OsARP6	Os01g0269900	LOC_Os01g16414	seed	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	The osarp6 knockout mutants displayed pleiotropic phenotypic alterations in vegetative and reproductive traits, including semi-dwarf phenotype, lower tillers number, short leaf length, changes in spikelet morphology, and seed abortion
OsARP6	Os01g0269900	LOC_Os01g16414	ATPase	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	OsARP6 interacted with OsPIE1, a central ATPase subunit of rice SWR1-C
OsARP6	Os01g0269900	LOC_Os01g16414	cell division	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	The altered transcript level of genes involved in cell division suggested that OsARP6 affects cell cycle regulation
OsARP6	Os01g0269900	LOC_Os01g16414	vegetative	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	The osarp6 knockout mutants displayed pleiotropic phenotypic alterations in vegetative and reproductive traits, including semi-dwarf phenotype, lower tillers number, short leaf length, changes in spikelet morphology, and seed abortion
OsARP6	Os01g0269900	LOC_Os01g16414	reproductive	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	The osarp6 knockout mutants displayed pleiotropic phenotypic alterations in vegetative and reproductive traits, including semi-dwarf phenotype, lower tillers number, short leaf length, changes in spikelet morphology, and seed abortion
OsARP6	Os01g0269900	LOC_Os01g16414	dwarf	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	Microscopic thin sectioning of the top internode revealed that the dwarf phenotype of osarp6 was due to reduced number of cells rather than reduced cell length
OsARP6	Os01g0269900	LOC_Os01g16414	cell cycle	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	The altered transcript level of genes involved in cell division suggested that OsARP6 affects cell cycle regulation
OsARP6	Os01g0269900	LOC_Os01g16414	internode elongation	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes	OsARP6 Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes
OsAS2	Os06g0265000	LOC_Os06g15420	nitrogen	Biological functions of asparagine synthetase in plants	Genetic and molecular data using mutants and transgenic plants have provided insights into the light perception by the photoreceptors, carbon and nitrogen sensing and signal transduction mechanism in the asn regulation
OsAS2	Os06g0265000	LOC_Os06g15420	nitrogen	Biological functions of asparagine synthetase in plants	Global analysis of carbon and nitrogen metabolites supports the impact of asn regulation in the synthesis and transport of asparagine in plants
OsAS2	Os06g0265000	LOC_Os06g15420	leaf	Asparagine synthetase1, but not asparagine synthetase2, is responsible for the biosynthesis of asparagine following the supply of ammonium to rice roots.	Conversely, OsAS2 mRNA was abundant in leaf blades and sheathes of rice
OsASHL1	Os12g0143200	LOC_Os12g04930	growth	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 Lower expression of Ehd1, OsVIL4, and OsMADS51 in the osashl1 osashl2 double mutant background accompanies a delayed vegetative growth phase and photoperiod-sensitive phase compared with that in wild type
OsASHL1	Os12g0143200	LOC_Os12g04930	growth	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL1	Os12g0143200	LOC_Os12g04930	development	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.
OsASHL1	Os12g0143200	LOC_Os12g04930	development	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL1	Os12g0143200	LOC_Os12g04930	development	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In summary, we demonstrate that OsASHL1 and OsASHL2 are important for floral transition and plant development
OsASHL1	Os12g0143200	LOC_Os12g04930	brassinosteroid	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL1	Os12g0143200	LOC_Os12g04930	Brassinosteroid	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL1	Os12g0143200	LOC_Os12g04930	plant development	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.
OsASHL1	Os12g0143200	LOC_Os12g04930	plant development	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In summary, we demonstrate that OsASHL1 and OsASHL2 are important for floral transition and plant development
OsASHL1	Os12g0143200	LOC_Os12g04930	vegetative	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 Lower expression of Ehd1, OsVIL4, and OsMADS51 in the osashl1 osashl2 double mutant background accompanies a delayed vegetative growth phase and photoperiod-sensitive phase compared with that in wild type
OsASHL1	Os12g0143200	LOC_Os12g04930	floral	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.
OsASHL1	Os12g0143200	LOC_Os12g04930	floral	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In summary, we demonstrate that OsASHL1 and OsASHL2 are important for floral transition and plant development
OsASHL1	Os12g0143200	LOC_Os12g04930	plant growth	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL1	Os12g0143200	LOC_Os12g04930	dwarf	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 The osashl1 osashl2 double mutant shows a dwarf and late-flowering phenotype
OsASHL2	Os11g0146500	LOC_Os11g04930	growth	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 Lower expression of Ehd1, OsVIL4, and OsMADS51 in the osashl1 osashl2 double mutant background accompanies a delayed vegetative growth phase and photoperiod-sensitive phase compared with that in wild type
OsASHL2	Os11g0146500	LOC_Os11g04930	growth	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL2	Os11g0146500	LOC_Os11g04930	development	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL2	Os11g0146500	LOC_Os11g04930	development	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In summary, we demonstrate that OsASHL1 and OsASHL2 are important for floral transition and plant development
OsASHL2	Os11g0146500	LOC_Os11g04930	brassinosteroid	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL2	Os11g0146500	LOC_Os11g04930	Brassinosteroid	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL2	Os11g0146500	LOC_Os11g04930	plant development	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In summary, we demonstrate that OsASHL1 and OsASHL2 are important for floral transition and plant development
OsASHL2	Os11g0146500	LOC_Os11g04930	vegetative	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 Lower expression of Ehd1, OsVIL4, and OsMADS51 in the osashl1 osashl2 double mutant background accompanies a delayed vegetative growth phase and photoperiod-sensitive phase compared with that in wild type
OsASHL2	Os11g0146500	LOC_Os11g04930	floral	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In summary, we demonstrate that OsASHL1 and OsASHL2 are important for floral transition and plant development
OsASHL2	Os11g0146500	LOC_Os11g04930	plant growth	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 In addition, the expression of key genes in brassinosteroid and gibberellic acid metabolism is altered in the osashl1 osashl2 double mutant, suggesting that the COMPASS-like complex regulates plant growth and development by modulating the levels of these two phytohormones
OsASHL2	Os11g0146500	LOC_Os11g04930	dwarf	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	 The osashl1 osashl2 double mutant shows a dwarf and late-flowering phenotype
OsASL1	Os03g0305500	LOC_Os03g19280	root	An appropriate concentration of arginine is required for normal root growth in rice.	Here, we further characterized OsASL1 in terms of expression pattern, subcellular localization, and arginine effect on the root growth
OsASL1	Os03g0305500	LOC_Os03g19280	root	An appropriate concentration of arginine is required for normal root growth in rice.	Our results indicate that the subcellular localization was determined by the N terminus of OsASL1 and that appropriate concentration of Arg is required for normal root elongation in rice
OsASL1	Os03g0305500	LOC_Os03g19280	growth	An appropriate concentration of arginine is required for normal root growth in rice.	Here, we further characterized OsASL1 in terms of expression pattern, subcellular localization, and arginine effect on the root growth
OsASL1	Os03g0305500	LOC_Os03g19280	growth	An appropriate concentration of arginine is required for normal root growth in rice.	1 was expressed in most organs throughout the whole growth period, whereas OsASL1
OsASL1	Os03g0305500	LOC_Os03g19280	root elongation	An appropriate concentration of arginine is required for normal root growth in rice	Our results indicate that the subcellular localization was determined by the N terminus of OsASL1 and that appropriate concentration of Arg is required for normal root elongation in rice.
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	root	Asparagine synthetase1, but not asparagine synthetase2, is responsible for the biosynthesis of asparagine following the supply of ammonium to rice roots.	OsAS1 was mainly expressed in the roots with in situ hybridization showing that the corresponding mRNA was specifically accumulated in the three cell layers of root surface (epidermis, exodermis, and sclerenchyma) in an NH4 (+)-dependent manner
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	tiller	OsASN1 Plays a Critical Role in Asparagine-Dependent Rice Development.	These results suggest that OsASN1 is involved in the regulation of rice development and is specific for tiller outgrowth
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	development	OsASN1 Plays a Critical Role in Asparagine-Dependent Rice Development.	These results suggest that OsASN1 is involved in the regulation of rice development and is specific for tiller outgrowth
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	nitrogen	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	In addition, we show that overexpression (OX) of OsASN1 results in better nitrogen uptake and assimilation, and increased tolerance to N limitation at the seedling stage
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	development	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	seedling	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	In addition, we show that overexpression (OX) of OsASN1 results in better nitrogen uptake and assimilation, and increased tolerance to N limitation at the seedling stage
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	tolerance	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	In addition, we show that overexpression (OX) of OsASN1 results in better nitrogen uptake and assimilation, and increased tolerance to N limitation at the seedling stage
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain yield	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	yield	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	yield	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Under field conditions, the OsASN1 OX rice plants produced grains with increased N and protein contents without yield reduction compared to wild-type (WT) rice
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	yield	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain protein content	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain protein content	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain protein	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain protein	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	nitrogen	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	In addition, we show that overexpression (OX) of OsASN1 results in better nitrogen uptake and assimilation, and increased tolerance to N limitation at the seedling stage
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	development	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	seedling	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	In addition, we show that overexpression (OX) of OsASN1 results in better nitrogen uptake and assimilation, and increased tolerance to N limitation at the seedling stage
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	tolerance	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	In addition, we show that overexpression (OX) of OsASN1 results in better nitrogen uptake and assimilation, and increased tolerance to N limitation at the seedling stage
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain yield	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	yield	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	yield	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Under field conditions, the OsASN1 OX rice plants produced grains with increased N and protein contents without yield reduction compared to wild-type (WT) rice
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	yield	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain protein content	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain protein content	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain protein	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions
OsASN1|OsAS1	Os03g0291500	LOC_Os03g18130	grain protein	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions	Thus, OsASN1 can be an effective target gene for the development of rice cultivars with higher grain protein content, NUE, and grain yield under N-limiting conditions
OsAT1	Os10g0195600	LOC_Os10g11980	blast resistance	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice	Lesion mimic and blast resistance phenotypes were detected in the transgenic lines produced, clearly indicating that overexpression of OsAT1 caused the Spl18 phenotypes
OsAT1	Os10g0195600	LOC_Os10g11980	blight	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice	In addition, plants overexpressing OsAT1 showed resistance to bacterial blight
OsAT1	Os10g0195600	LOC_Os10g11980	leaf	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice	The transcriptional level of OsAT1 was very low in the WT leaf blade but high in Spl18 leaf blade
OsAT1	Os10g0195600	LOC_Os10g11980	leaf	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice	In wild-type rice, OsAT1 was transcribed mainly in the young panicle, in the panicle just after heading, and in the leaf sheath
OsAT1	Os10g0195600	LOC_Os10g11980	panicle	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice	In wild-type rice, OsAT1 was transcribed mainly in the young panicle, in the panicle just after heading, and in the leaf sheath
OsAT1	Os10g0195600	LOC_Os10g11980	bacterial blight	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice	In addition, plants overexpressing OsAT1 showed resistance to bacterial blight
OsAT1	Os10g0195600	LOC_Os10g11980	blast	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice	Lesion mimic and blast resistance phenotypes were detected in the transgenic lines produced, clearly indicating that overexpression of OsAT1 caused the Spl18 phenotypes
OsAT1	Os10g0195600	LOC_Os10g11980	sheath	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice	In wild-type rice, OsAT1 was transcribed mainly in the young panicle, in the panicle just after heading, and in the leaf sheath
OsAt10	Os06g0594600	LOC_Os06g39390	leaf	Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification	An activation-tagged line, OsAT10-D1, shows a 60% reduction in matrix polysaccharide-bound FA and an approximately 300% increase in p-CA in young leaf tissue but no discernible phenotypic alterations in vegetative development, lignin content, or lignin composition
OsAt10	Os06g0594600	LOC_Os06g39390	yield	Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification	Biomass from OsAT10-D1 exhibits a 20% to 40% increase in saccharification yield depending on the assay
OsAt10	Os06g0594600	LOC_Os06g39390	vegetative	Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification	An activation-tagged line, OsAT10-D1, shows a 60% reduction in matrix polysaccharide-bound FA and an approximately 300% increase in p-CA in young leaf tissue but no discernible phenotypic alterations in vegetative development, lignin content, or lignin composition
OsAt10	Os06g0594600	LOC_Os06g39390	biomass	Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification	Biomass from OsAT10-D1 exhibits a 20% to 40% increase in saccharification yield depending on the assay
OsAt10	Os06g0594600	LOC_Os06g39390	cell wall	Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification	Thus, OsAt10 is an attractive target for improving grass cell wall quality for fuel and animal feed
OsAt10	Os06g0594600	LOC_Os06g39390	cell wall	Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification	Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification
OsAt10	Os06g0594600	LOC_Os06g39390	leaf	Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification.	Here we show that overexpression of the rice OsAT10 gene in switchgrass decreased the levels of cell wall-bound ferulic acid (FA) in green leaf tissues and to a lesser extent in senesced tissues, and significantly increased levels of cell wall-bound p-coumaric acid (p-CA) in green leaves but decreased its level in senesced tissues of the T0 plants under greenhouse conditions
OsAt10	Os06g0594600	LOC_Os06g39390	cell wall	Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification.	Here we show that overexpression of the rice OsAT10 gene in switchgrass decreased the levels of cell wall-bound ferulic acid (FA) in green leaf tissues and to a lesser extent in senesced tissues, and significantly increased levels of cell wall-bound p-coumaric acid (p-CA) in green leaves but decreased its level in senesced tissues of the T0 plants under greenhouse conditions
OsAt10	Os06g0594600	LOC_Os06g39390	cell wall	CRISPR/Cas9 suppression of OsAT10, a rice BAHD acyltransferase, reduces p-coumaric acid incorporation into arabinoxylan without increasing saccharification.	 Overexpression of OsAT10 (a Mitchell clade BAHD acyl transferase) in rice, has previously been shown to increase p-CA content in AX in leaves and stems, leading to increased cell wall digestibility, potentially associated with a concomitant decrease in FA content
OsATG10b	Os12g0506800	LOC_Os12g32210	oxidative	OsATG10b, an autophagosome component, is needed for cell survival against oxidative stresses in rice	These results demonstrate that OsATG10b plays an important role in the survival of rice cells against oxidative stresses
OsATG10b	Os12g0506800	LOC_Os12g32210	oxidative	OsATG10b, an autophagosome component, is needed for cell survival against oxidative stresses in rice	OsATG10b, an autophagosome component, is needed for cell survival against oxidative stresses in rice
OsATG10b	Os12g0506800	LOC_Os12g32210	salt	OsATG10b, an autophagosome component, is needed for cell survival against oxidative stresses in rice	Those osatg10b mutants were sensitive to treatments with high salt and methyl viologen (MV)
OsATG5	Os02g0117800	LOC_Os02g02570	autophagy	eIF4A, a target of siRNA derived from rice stripe virus, negatively regulates antiviral autophagy by interacting with ATG5 in Nicotiana benthamiana	Finally, we demonstrate that eIF4A from rice, the natural host of RSV, also interacts with OsATG5 and suppresses OsATG5-activated autophagy, pointing to the conserved function of eIF4A as a negative regulator of antiviral autophagy.
OsATG7	Os01g0614900	LOC_Os01g42850	pollen	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.	Autophagosome-like structures and several vacuole-enclosed lipid bodies were observed in postmeiotic tapetum cells specifically at the uninucleate stage during pollen development, which were completely abolished in a retrotransposon-insertional OsATG7 (autophagy-related 7)-knockout mutant defective in autophagy, suggesting that autophagy is induced in tapetum cells
OsATG7	Os01g0614900	LOC_Os01g42850	anther	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.
OsATG7	Os01g0614900	LOC_Os01g42850	tapetum	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.	Autophagosome-like structures and several vacuole-enclosed lipid bodies were observed in postmeiotic tapetum cells specifically at the uninucleate stage during pollen development, which were completely abolished in a retrotransposon-insertional OsATG7 (autophagy-related 7)-knockout mutant defective in autophagy, suggesting that autophagy is induced in tapetum cells
OsATG7	Os01g0614900	LOC_Os01g42850	anther development	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.
OsATG7	Os01g0614900	LOC_Os01g42850	pollen development	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.	Autophagosome-like structures and several vacuole-enclosed lipid bodies were observed in postmeiotic tapetum cells specifically at the uninucleate stage during pollen development, which were completely abolished in a retrotransposon-insertional OsATG7 (autophagy-related 7)-knockout mutant defective in autophagy, suggesting that autophagy is induced in tapetum cells
OsAtg8	Os07g0512200	LOC_Os07g32800	autophagy	Autophagy targets Hd1 for vacuolar degradation to regulate rice flowering.	 In the dark, nucleus-localized Hd1 is recognized as a substrate for autophagy and is subjected to vacuolar degradation via the autophagy protein OsATG8
OsATG8b	Os04g0624000	LOC_Os04g53240	nitrogen	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.
OsATG8b	Os04g0624000	LOC_Os04g53240	nitrogen	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	Further examination revealed that overexpression of OsATG8b could effectively alleviate the growth inhibition of transgenic Arabidopsis under nitrogen (N) stress
OsATG8b	Os04g0624000	LOC_Os04g53240	growth	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	It was also showed that over-expressing OsATG8b promoted growth and development of Arabidopsis, in which the rosette leaves were larger than those of the wild type (WT), and the yield increased significantly by 25
OsATG8b	Os04g0624000	LOC_Os04g53240	growth	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	Further examination revealed that overexpression of OsATG8b could effectively alleviate the growth inhibition of transgenic Arabidopsis under nitrogen (N) stress
OsATG8b	Os04g0624000	LOC_Os04g53240	development	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	It was also showed that over-expressing OsATG8b promoted growth and development of Arabidopsis, in which the rosette leaves were larger than those of the wild type (WT), and the yield increased significantly by 25
OsATG8b	Os04g0624000	LOC_Os04g53240	tolerance	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.
OsATG8b	Os04g0624000	LOC_Os04g53240	yield	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.
OsATG8b	Os04g0624000	LOC_Os04g53240	yield	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	It was also showed that over-expressing OsATG8b promoted growth and development of Arabidopsis, in which the rosette leaves were larger than those of the wild type (WT), and the yield increased significantly by 25
OsATG8b	Os04g0624000	LOC_Os04g53240	stress	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	Further examination revealed that overexpression of OsATG8b could effectively alleviate the growth inhibition of transgenic Arabidopsis under nitrogen (N) stress
OsATG8b	Os04g0624000	LOC_Os04g53240	nitrogen	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.
OsATG8b	Os04g0624000	LOC_Os04g53240	grain	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.
OsATG8b	Os04g0624000	LOC_Os04g53240	grain	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.	We identified the rice gene OsATG8b and characterized its role in N remobilization to affect grain quality by generating  transgenic plants with its over-expression and knockdown
OsATG8b	Os04g0624000	LOC_Os04g53240	grain	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.	The autophagic role of OsATG8b was experimentally confirmed, and it was concluded that OsATG8b-mediated autophagy is involved in N recycling to grains and contributes to the grain quality, indicating that OsATG8b may be a potential gene for molecular breeding and cultivation of rice
OsATG8b	Os04g0624000	LOC_Os04g53240	breeding	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.	The autophagic role of OsATG8b was experimentally confirmed, and it was concluded that OsATG8b-mediated autophagy is involved in N recycling to grains and contributes to the grain quality, indicating that OsATG8b may be a potential gene for molecular breeding and cultivation of rice
OsATG8b	Os04g0624000	LOC_Os04g53240	quality	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.	We identified the rice gene OsATG8b and characterized its role in N remobilization to affect grain quality by generating  transgenic plants with its over-expression and knockdown
OsATG8b	Os04g0624000	LOC_Os04g53240	grain quality	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.
OsATG8b	Os04g0624000	LOC_Os04g53240	grain quality	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.	We identified the rice gene OsATG8b and characterized its role in N remobilization to affect grain quality by generating  transgenic plants with its over-expression and knockdown
OsATG8b	Os04g0624000	LOC_Os04g53240	grain quality	A Rice Autophagy Gene OsATG8b Is Involved in Nitrogen Remobilization and Control  of Grain Quality.	The autophagic role of OsATG8b was experimentally confirmed, and it was concluded that OsATG8b-mediated autophagy is involved in N recycling to grains and contributes to the grain quality, indicating that OsATG8b may be a potential gene for molecular breeding and cultivation of rice
OsATG8c	Os08g0191600	LOC_Os08g09240	yield	OsATG8c-Mediated Increased Autophagy Regulates the Yield and Nitrogen Use Efficiency in Rice.	It was found that the overexpression of OsATG8c significantly enhanced the activity of autophagy and that the number of autophagosomes, dwarfed the plant height and increased the effective tillers' number and yield
OsATG8c	Os08g0191600	LOC_Os08g09240	height	OsATG8c-Mediated Increased Autophagy Regulates the Yield and Nitrogen Use Efficiency in Rice.	It was found that the overexpression of OsATG8c significantly enhanced the activity of autophagy and that the number of autophagosomes, dwarfed the plant height and increased the effective tillers' number and yield
OsATG8c	Os08g0191600	LOC_Os08g09240	plant height	OsATG8c-Mediated Increased Autophagy Regulates the Yield and Nitrogen Use Efficiency in Rice.	It was found that the overexpression of OsATG8c significantly enhanced the activity of autophagy and that the number of autophagosomes, dwarfed the plant height and increased the effective tillers' number and yield
OsATL15	Os01g0597600	LOC_Os01g41420	leaf	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper.	 OsATL15 was localized in rice cell membrane and abundant in the root transverse sections, vascular bundles of leaf blade, and stem longitudinal sections, but not in hull and brown rice at filling stages
OsATL15	Os01g0597600	LOC_Os01g41420	vascular bundle	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper.	 OsATL15 was localized in rice cell membrane and abundant in the root transverse sections, vascular bundles of leaf blade, and stem longitudinal sections, but not in hull and brown rice at filling stages
OsATL15	Os01g0597600	LOC_Os01g41420	stem	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper.	 OsATL15 was localized in rice cell membrane and abundant in the root transverse sections, vascular bundles of leaf blade, and stem longitudinal sections, but not in hull and brown rice at filling stages
OsATL15	Os01g0597600	LOC_Os01g41420	root	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper.	 OsATL15 was localized in rice cell membrane and abundant in the root transverse sections, vascular bundles of leaf blade, and stem longitudinal sections, but not in hull and brown rice at filling stages
OsATL15	Os01g0597600	LOC_Os01g41420	amino acid transporter	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper
OsATL15	Os01g0597600	LOC_Os01g41420	thiamethoxam	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper
OsATL15	Os01g0597600	LOC_Os01g41420	brown planthopper	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper
OsATL15	Os01g0597600	LOC_Os01g41420	pest	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper	OsATL15 could be valuable in achieving precise pest control by biotechnology approaches.
OsATL53	Os04g0571800	LOC_Os04g48310	root	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.
OsATL53	Os04g0571800	LOC_Os04g48310	anther	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.
OsATL53	Os04g0571800	LOC_Os04g48310	ja	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 These data show OsATL53 affects activity of OsCCR14, and their JA induced degradation by SCF OsFBK1 regulates lignification of rice anthers and roots
OsATL53	Os04g0571800	LOC_Os04g48310	JA	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 These data show OsATL53 affects activity of OsCCR14, and their JA induced degradation by SCF OsFBK1 regulates lignification of rice anthers and roots
OsATL53	Os04g0571800	LOC_Os04g48310	nucleus	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 SCF OsFBK1 mediates turn-over of OsATL53 in cytoplasm and nucleus, while of OsCCR14 in the nucleus as validated by cell-free degradation assays
OsATL53	Os04g0571800	LOC_Os04g48310	cytoplasm	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 SCF OsFBK1 mediates turn-over of OsATL53 in cytoplasm and nucleus, while of OsCCR14 in the nucleus as validated by cell-free degradation assays
OsATL53	Os04g0571800	LOC_Os04g48310	cytoplasm	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 Biochemically, OsATL53 decreases enzymatic activity of OsCCR14 and sequesters it in the cytoplasm thereby regulating the lignification process
OsATL53	Os04g0571800	LOC_Os04g48310	jasmonic	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.
OsATL53	Os04g0571800	LOC_Os04g48310	jasmonic acid	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.
OsATL53	Os04g0571800	LOC_Os04g48310	lignin	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 Knock-down rice transgenics of OsATL53 display increased lignin deposition in the anthers and roots vis-a-vis wild-type, while those of OsCCR14 have decreased lignin content
OsATL53	Os04g0571800	LOC_Os04g48310	 ja 	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 These data show OsATL53 affects activity of OsCCR14, and their JA induced degradation by SCF OsFBK1 regulates lignification of rice anthers and roots
OsATM	Os01g0106700|Os01g0106750	LOC_Os01g01689	pollen	OsATM safeguards accurate repair of meiotic double-strand breaks in rice.	Aberrant chromosome associations and DNA fragmentations were observed after the completion of homologous pairing and synapsis in Osatm pollen mother cells (PMCs)
OsATM	Os01g0106700|Os01g0106750	LOC_Os01g01689	meiotic	OsATM safeguards accurate repair of meiotic double-strand breaks in rice.	OsATM safeguards accurate repair of meiotic double-strand breaks in rice.
OsATM	Os01g0106700|Os01g0106750	LOC_Os01g01689	meiotic	OsATM safeguards accurate repair of meiotic double-strand breaks in rice.	Together, these findings suggest that OsATM plays important roles in the accurate repair of meiotic DSBs in rice
OsATM	Os01g0106700|Os01g0106750	LOC_Os01g01689	homologous recombination	OsATM safeguards accurate repair of meiotic double-strand breaks in rice.	Aberrant chromosome associations disappeared in Osspo11-1 Osatm-1 double mutants and more severe defects were observed in Osdmc1  Osatm, suggesting that OsATM functions downstream of OsSPO11-1-catalyzed double-strand break (DSB) formation and in parallel with OsDMC1-mediated homologous recombination
OsATM3	Os06g0128300	LOC_Os06g03770	leaf	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	In the osatm3 T-DNA insertion mutant, the fourth leaf fails to develop and the lateral roots are short
OsATM3	Os06g0128300	LOC_Os06g03770	root	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Promoter-β-glucuronidase staining of the transgenic line indicated that OsATM3 is highly expressed in lateral root primordia, root tip meristem zones, and shoot apical meristem regions
OsATM3	Os06g0128300	LOC_Os06g03770	root	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Massive cell death occurred in the osatm3 root tip meristem zone
OsATM3	Os06g0128300	LOC_Os06g03770	shoot	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Promoter-β-glucuronidase staining of the transgenic line indicated that OsATM3 is highly expressed in lateral root primordia, root tip meristem zones, and shoot apical meristem regions
OsATM3	Os06g0128300	LOC_Os06g03770	cell death	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Massive cell death occurred in the osatm3 root tip meristem zone
OsATM3	Os06g0128300	LOC_Os06g03770	meristem	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Promoter-β-glucuronidase staining of the transgenic line indicated that OsATM3 is highly expressed in lateral root primordia, root tip meristem zones, and shoot apical meristem regions
OsATM3	Os06g0128300	LOC_Os06g03770	meristem	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Massive cell death occurred in the osatm3 root tip meristem zone
OsATM3	Os06g0128300	LOC_Os06g03770	cell cycle	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Quantitative RT-PCR revealed transcriptional reprogramming of the genes in the osatm3 and RNAi lines involved in DNA repair and cell cycle arrest
OsATM3	Os06g0128300	LOC_Os06g03770	R protein	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Cytosolic iron-sulfur protein activities were significantly reduced in both osatm3 and RNA interference (RNAi) transgenic lines
OsATM3	Os06g0128300	LOC_Os06g03770	lateral root	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	In the osatm3 T-DNA insertion mutant, the fourth leaf fails to develop and the lateral roots are short
OsATM3	Os06g0128300	LOC_Os06g03770	lateral root	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Promoter-β-glucuronidase staining of the transgenic line indicated that OsATM3 is highly expressed in lateral root primordia, root tip meristem zones, and shoot apical meristem regions
OsATM3	Os06g0128300	LOC_Os06g03770	iron	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	The expression profiles of many iron metabolism genes were altered in the osatm3 and RNAi lines
OsATM3	Os06g0128300	LOC_Os06g03770	shoot apical meristem	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Promoter-β-glucuronidase staining of the transgenic line indicated that OsATM3 is highly expressed in lateral root primordia, root tip meristem zones, and shoot apical meristem regions
OsATM3	Os06g0128300	LOC_Os06g03770	reactive oxygen species	Mitochondrial ABC Transporter ATM3 is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Glutathione metabolism was impaired and reactive oxygen species (ROS), particularly superoxide, accumulated in osatm3
OsaTRZ2	Os09g0482680	LOC_Os09g30466	chloroplast	The tRNA 3&#39;-end processing enzyme tRNase Z2 contributes to chloroplast biogenesis in rice.	These results suggest that the tRNA 3&#39; processing activity of OsaTRZ2 contributes to chloroplast biogenesis
OsaTRZ2	Os09g0482680	LOC_Os09g30466	chlorophyll content	The tRNA 3&#39;-end processing enzyme tRNase Z2 contributes to chloroplast biogenesis in rice.	This study describes the identification of a rice (Oryza sativa) TRZ2 mutant; plants homozygous for the osatrz2 mutation were albinos with deficient chlorophyll content
OsaTRZ2	Os09g0482680	LOC_Os09g30466	chloroplast biogenesis	The tRNA 3&#39;-end processing enzyme tRNase Z2 contributes to chloroplast biogenesis in rice.	These results suggest that the tRNA 3&#39; processing activity of OsaTRZ2 contributes to chloroplast biogenesis
OsATX	Os01g0826000	LOC_Os01g61070	seedling	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	Nipponbare) gene, OsATX, a single copy gene, from the JA treated rice seedling leaves cDNA library
OsATX	Os01g0826000	LOC_Os01g61070	ABA	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	Additionally, co-application of either JA or ABA with SA drastically suppressed the induced OsATX mRNA level
OsATX	Os01g0826000	LOC_Os01g61070	sa	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	Additionally, co-application of either JA or ABA with SA drastically suppressed the induced OsATX mRNA level
OsATX	Os01g0826000	LOC_Os01g61070	leaf	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	OsATX was responsive to cutting (wounding by cutting the excised leaf), over its weak constitutive expression in the healthy leaves
OsATX	Os01g0826000	LOC_Os01g61070	leaf	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	The critical signalling molecules, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), and hydrogen peroxide, together with protein phosphatase inhibitors, effectively up-regulated the OsATX expression with time, over the excised leaf cut control, whereas ethylene had no affect
OsATX	Os01g0826000	LOC_Os01g61070	blast	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	Finally, the blast pathogen, Magnaporthe grisea, triggered OsATX mRNA accumulation
OsATX	Os01g0826000	LOC_Os01g61070	jasmonic acid	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	The critical signalling molecules, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), and hydrogen peroxide, together with protein phosphatase inhibitors, effectively up-regulated the OsATX expression with time, over the excised leaf cut control, whereas ethylene had no affect
OsATX	Os01g0826000	LOC_Os01g61070	salicylic acid	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	The critical signalling molecules, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), and hydrogen peroxide, together with protein phosphatase inhibitors, effectively up-regulated the OsATX expression with time, over the excised leaf cut control, whereas ethylene had no affect
OsATX	Os01g0826000	LOC_Os01g61070	ethylene	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	The critical signalling molecules, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), and hydrogen peroxide, together with protein phosphatase inhibitors, effectively up-regulated the OsATX expression with time, over the excised leaf cut control, whereas ethylene had no affect
OsATX	Os01g0826000	LOC_Os01g61070	defense	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	These results strongly suggest a function/role(s) for OsATX in defense/stress responses in rice
OsATX	Os01g0826000	LOC_Os01g61070	jasmonic	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	The critical signalling molecules, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), and hydrogen peroxide, together with protein phosphatase inhibitors, effectively up-regulated the OsATX expression with time, over the excised leaf cut control, whereas ethylene had no affect
OsATX	Os01g0826000	LOC_Os01g61070	ja	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	Nipponbare) gene, OsATX, a single copy gene, from the JA treated rice seedling leaves cDNA library
OsATX	Os01g0826000	LOC_Os01g61070	ja	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways	Additionally, co-application of either JA or ABA with SA drastically suppressed the induced OsATX mRNA level
OsATX1	Os08g0205400	LOC_Os08g10480	leaf	OsATX1 Interacts with Heavy Metal P1B-type ATPases and Affects Copper Transport and Distribution.	At the reproductive stage, the concentrations of Cu in developing tissues, including panicles, upper nodes and internodes, younger leaf blades, and leaf sheaths of the main tiller, were significantly increased in OsATX1-overexpressing plants and decreased in osatx1 mutants compared to that in wild type
OsATX1	Os08g0205400	LOC_Os08g10480	root	OsATX1 Interacts with Heavy Metal P1B-type ATPases and Affects Copper Transport and Distribution.	Knocking out OsATX1 resulted in increased Cu concentrations in roots, whereas OsATX1 overexpression reduced root Cu concentrations but increased Cu accumulation in the shoots
OsATX1	Os08g0205400	LOC_Os08g10480	tolerance	OsATX1 Interacts with Heavy Metal P1B-type ATPases and Affects Copper Transport and Distribution.	In addition, heterologous expression of OsATX1 in the yeast (Saccharomyces cerevisiae) cadmium (Cd)-sensitive mutant ycf1 increased the tolerance to Cu and Cd by decreasing their respective concentrations in the transformed yeast cells
OsATX1	Os08g0205400	LOC_Os08g10480	reproductive	OsATX1 Interacts with Heavy Metal P1B-type ATPases and Affects Copper Transport and Distribution.	At the reproductive stage, the concentrations of Cu in developing tissues, including panicles, upper nodes and internodes, younger leaf blades, and leaf sheaths of the main tiller, were significantly increased in OsATX1-overexpressing plants and decreased in osatx1 mutants compared to that in wild type
OsATX1	Os08g0205400	LOC_Os08g10480	homeostasis	OsATX1 Interacts with Heavy Metal P1B-type ATPases and Affects Copper Transport and Distribution.	These results suggest that OsATX1 may function to deliver Cu to heavy metal P1B-ATPases for Cu trafficking and distribution in order to maintain Cu homeostasis in different rice tissues
OsATX1	Os08g0205400	LOC_Os08g10480	cadmium	OsATX1 Interacts with Heavy Metal P1B-type ATPases and Affects Copper Transport and Distribution.	In addition, heterologous expression of OsATX1 in the yeast (Saccharomyces cerevisiae) cadmium (Cd)-sensitive mutant ycf1 increased the tolerance to Cu and Cd by decreasing their respective concentrations in the transformed yeast cells
OsATX1	Os08g0205400	LOC_Os08g10480	copper	OsATX1 Interacts with Heavy Metal P1B-type ATPases and Affects Copper Transport and Distribution.	OsATX1 Interacts with Heavy Metal P1B-type ATPases and Affects Copper Transport and Distribution.
OsAUX1	Os01g0856500	LOC_Os01g63770	tillering	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsAUX1	Os01g0856500	LOC_Os01g63770	tiller	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsAUX1	Os01g0856500	LOC_Os01g63770	transporter	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsAUX1	Os01g0856500	LOC_Os01g63770	root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).
OsAUX1	Os01g0856500	LOC_Os01g63770	root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	The auxin influx carriers in Arabidopsis have been shown to control lateral root development and gravitropism, but little is known about these proteins in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Three OsAUX1 T-DNA insertion mutants and RNAi knockdown transgenic plants reduced lateral root initiation compared to WT plants
OsAUX1	Os01g0856500	LOC_Os01g63770	root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	OsAUX1 overexpression plants exhibited increased lateral root initiation and OsAUX1 was highly expressed in lateral roots and lateral root primordia
OsAUX1	Os01g0856500	LOC_Os01g63770	root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Similarly, the auxin reporter, DR5-GUS, was expressed at lower levels in osaux1 than in the WT plants, which indicated that the auxin levels in the mutant roots had decreased
OsAUX1	Os01g0856500	LOC_Os01g63770	root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Overall, our results indicated that OsAUX1 was involved in polar auxin transport and functioned to control auxin-mediated lateral root initiation in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	growth	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Polar auxin transport, mediated by influx and efflux transporters, controls many aspects of plant growth and development
OsAUX1	Os01g0856500	LOC_Os01g63770	iaa	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Exogenous NAA treatment rescued the defective phenotype in osaux1-1 plants, whereas IAA and 2,4-D could not, which suggested that OsAUX1 was a putative auxin influx carrier
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Polar auxin transport, mediated by influx and efflux transporters, controls many aspects of plant growth and development
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	The auxin influx carriers in Arabidopsis have been shown to control lateral root development and gravitropism, but little is known about these proteins in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Similarly, the auxin reporter, DR5-GUS, was expressed at lower levels in osaux1 than in the WT plants, which indicated that the auxin levels in the mutant roots had decreased
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Exogenous NAA treatment rescued the defective phenotype in osaux1-1 plants, whereas IAA and 2,4-D could not, which suggested that OsAUX1 was a putative auxin influx carrier
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	The transcript levels of several auxin-signaling genes and cell cycle genes significantly declined in osaux1, hinting that the regulatory role of OsAUX1 may be mediated by auxin-signaling and cell cycle genes
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Overall, our results indicated that OsAUX1 was involved in polar auxin transport and functioned to control auxin-mediated lateral root initiation in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	transporter	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Polar auxin transport, mediated by influx and efflux transporters, controls many aspects of plant growth and development
OsAUX1	Os01g0856500	LOC_Os01g63770	cell cycle	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	The transcript levels of several auxin-signaling genes and cell cycle genes significantly declined in osaux1, hinting that the regulatory role of OsAUX1 may be mediated by auxin-signaling and cell cycle genes
OsAUX1	Os01g0856500	LOC_Os01g63770	lateral root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).
OsAUX1	Os01g0856500	LOC_Os01g63770	lateral root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	The auxin influx carriers in Arabidopsis have been shown to control lateral root development and gravitropism, but little is known about these proteins in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	lateral root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Three OsAUX1 T-DNA insertion mutants and RNAi knockdown transgenic plants reduced lateral root initiation compared to WT plants
OsAUX1	Os01g0856500	LOC_Os01g63770	lateral root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	OsAUX1 overexpression plants exhibited increased lateral root initiation and OsAUX1 was highly expressed in lateral roots and lateral root primordia
OsAUX1	Os01g0856500	LOC_Os01g63770	lateral root	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Overall, our results indicated that OsAUX1 was involved in polar auxin transport and functioned to control auxin-mediated lateral root initiation in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	root	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	OsAUX1 expression in root hair cells is different from its paralogous gene, AtAUX1, expressed in non-hair cells
OsAUX1	Os01g0856500	LOC_Os01g63770	root	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	Taken together, our results indicate that OsAUX1 plays an important role in root development and in responses to Cd stress
OsAUX1	Os01g0856500	LOC_Os01g63770	development	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	Taken together, our results indicate that OsAUX1 plays an important role in root development and in responses to Cd stress
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	However, OsAUX1 - like AtAUX1 - also localizes at the plasma membrane and seems to function as an auxin tranporter
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	Decreased auxin distribution and contents in osaux1 mutant result in reduction of OsCyCB1;1 expression and shortened PR, LR and RH under Cd stress, but can be rescued by the membrane-permeable auxin, 1-naphthaleneacetic acid (NAA)
OsAUX1	Os01g0856500	LOC_Os01g63770	stress	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	Here, we characterize rice osaux1 mutants that have longer PR and shorter RH in hydroponic culture, and that are more sensitive to Cd stress compared to WT/Dongjin (DJ)
OsAUX1	Os01g0856500	LOC_Os01g63770	stress	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	Cd contents in the osaux1 mutant were not altered but reactive oxygen species (ROS)-mediated damage was enhanced, further increasing the osaux1 mutant sensitivity to Cd stress
OsAUX1	Os01g0856500	LOC_Os01g63770	stress	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	Taken together, our results indicate that OsAUX1 plays an important role in root development and in responses to Cd stress
OsAUX1	Os01g0856500	LOC_Os01g63770	plasma membrane	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	However, OsAUX1 - like AtAUX1 - also localizes at the plasma membrane and seems to function as an auxin tranporter
OsAUX1	Os01g0856500	LOC_Os01g63770	root development	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	Taken together, our results indicate that OsAUX1 plays an important role in root development and in responses to Cd stress
OsAUX1	Os01g0856500	LOC_Os01g63770	root hair	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	OsAUX1 expression in root hair cells is different from its paralogous gene, AtAUX1, expressed in non-hair cells
OsAUX1	Os01g0856500	LOC_Os01g63770	reactive oxygen species	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativa L.).	Cd contents in the osaux1 mutant were not altered but reactive oxygen species (ROS)-mediated damage was enhanced, further increasing the osaux1 mutant sensitivity to Cd stress
OsAUX1	Os01g0856500	LOC_Os01g63770	spikelet	Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.	Moreover, protein localization of auxin transporters PIN1 homologs and GFP tagged OsAUX1 overlapped with DR5-VENUS during spikelet development, helping validate these auxin response reporters are reliable markers in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.	Moreover, protein localization of auxin transporters PIN1 homologs and GFP tagged OsAUX1 overlapped with DR5-VENUS during spikelet development, helping validate these auxin response reporters are reliable markers in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin transport	Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.	Moreover, protein localization of auxin transporters PIN1 homologs and GFP tagged OsAUX1 overlapped with DR5-VENUS during spikelet development, helping validate these auxin response reporters are reliable markers in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin response	Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.	Moreover, protein localization of auxin transporters PIN1 homologs and GFP tagged OsAUX1 overlapped with DR5-VENUS during spikelet development, helping validate these auxin response reporters are reliable markers in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	spikelet development	Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.	Moreover, protein localization of auxin transporters PIN1 homologs and GFP tagged OsAUX1 overlapped with DR5-VENUS during spikelet development, helping validate these auxin response reporters are reliable markers in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	root	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.
OsAUX1	Os01g0856500	LOC_Os01g63770	root	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Here, we attempted to modify root angle in rice by disrupting the OsAUX1 auxin influx transporter gene in an effort to improve rice P acquisition efficiency
OsAUX1	Os01g0856500	LOC_Os01g63770	root	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	We show by X-ray microCT imaging that root angle is altered in the osaux1 mutant, causing preferential foraging in the top soil where P normally accumulates, yet surprisingly, P acquisition efficiency does not improve
OsAUX1	Os01g0856500	LOC_Os01g63770	root	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Through closer investigation, we reveal that OsAUX1 also promotes root hair elongation in response to P limitation
OsAUX1	Os01g0856500	LOC_Os01g63770	root	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	We demonstrate that OsAUX1 functions to mobilize auxin from the root apex to the differentiation zone where this signal promotes hair elongation when roots encounter low external P
OsAUX1	Os01g0856500	LOC_Os01g63770	root	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	We conclude that auxin and OsAUX1 play key roles in promoting root foraging for P in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Here, we attempted to modify root angle in rice by disrupting the OsAUX1 auxin influx transporter gene in an effort to improve rice P acquisition efficiency
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	We demonstrate that OsAUX1 functions to mobilize auxin from the root apex to the differentiation zone where this signal promotes hair elongation when roots encounter low external P
OsAUX1	Os01g0856500	LOC_Os01g63770	auxin	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	We conclude that auxin and OsAUX1 play key roles in promoting root foraging for P in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	transporter	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Here, we attempted to modify root angle in rice by disrupting the OsAUX1 auxin influx transporter gene in an effort to improve rice P acquisition efficiency
OsAUX1	Os01g0856500	LOC_Os01g63770	root hair	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.
OsAUX1	Os01g0856500	LOC_Os01g63770	root hair	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Through closer investigation, we reveal that OsAUX1 also promotes root hair elongation in response to P limitation
OsAUX1	Os01g0856500	LOC_Os01g63770	transcription factor	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	root	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	root elongation	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice
OsAUX1	Os01g0856500	LOC_Os01g63770	primary root	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice
OsAUX3	Os05g0447200	LOC_Os05g37470	root	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	OsAUX3 expression in PRs, LRs and RHs further supports that OsAUX3 plays a critical role in the regulation of root development
OsAUX3	Os05g0447200	LOC_Os05g37470	root	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	OsAUX3 is upregulated in the root apex under aluminium (Al) stress and osaux3-2 is insensitive to Al treatments
OsAUX3	Os05g0447200	LOC_Os05g37470	root	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	Auxin concentrations, Al contents and Al-induced reactive oxygen species (ROS)-mediated damage in osaux3-2 under Al stress are lower than in WT, indicating that OsAUX3 is involved in Al-induced inhibition of root growth
OsAUX3	Os05g0447200	LOC_Os05g37470	growth	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	Auxin concentrations, Al contents and Al-induced reactive oxygen species (ROS)-mediated damage in osaux3-2 under Al stress are lower than in WT, indicating that OsAUX3 is involved in Al-induced inhibition of root growth
OsAUX3	Os05g0447200	LOC_Os05g37470	development	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	OsAUX3 expression in PRs, LRs and RHs further supports that OsAUX3 plays a critical role in the regulation of root development
OsAUX3	Os05g0447200	LOC_Os05g37470	root development	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	OsAUX3 expression in PRs, LRs and RHs further supports that OsAUX3 plays a critical role in the regulation of root development
OsAUX3	Os05g0447200	LOC_Os05g37470	auxin	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	OsAUX3 locates at the plasma membrane and functions as an auxin influx carrier affecting acropetal auxin transport
OsAUX3	Os05g0447200	LOC_Os05g37470	auxin	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	Auxin concentrations, Al contents and Al-induced reactive oxygen species (ROS)-mediated damage in osaux3-2 under Al stress are lower than in WT, indicating that OsAUX3 is involved in Al-induced inhibition of root growth
OsAUX3	Os05g0447200	LOC_Os05g37470	stress	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	OsAUX3 is upregulated in the root apex under aluminium (Al) stress and osaux3-2 is insensitive to Al treatments
OsAUX3	Os05g0447200	LOC_Os05g37470	stress	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	Auxin concentrations, Al contents and Al-induced reactive oxygen species (ROS)-mediated damage in osaux3-2 under Al stress are lower than in WT, indicating that OsAUX3 is involved in Al-induced inhibition of root growth
OsAUX3	Os05g0447200	LOC_Os05g37470	auxin transport	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	OsAUX3 locates at the plasma membrane and functions as an auxin influx carrier affecting acropetal auxin transport
OsAUX3	Os05g0447200	LOC_Os05g37470	plasma membrane	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	OsAUX3 locates at the plasma membrane and functions as an auxin influx carrier affecting acropetal auxin transport
OsAUX3	Os05g0447200	LOC_Os05g37470	reactive oxygen species	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	Auxin concentrations, Al contents and Al-induced reactive oxygen species (ROS)-mediated damage in osaux3-2 under Al stress are lower than in WT, indicating that OsAUX3 is involved in Al-induced inhibition of root growth
OsAUX3	Os05g0447200	LOC_Os05g37470	aluminium	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	OsAUX3 is upregulated in the root apex under aluminium (Al) stress and osaux3-2 is insensitive to Al treatments
OsAUX3	Os05g0447200	LOC_Os05g37470	transcription factor	A Novel miR167a-OsARF6-OsAUX3 Module Regulates Grain Length and Weight in Rice	RNA-sequencing, gene expression quantification, dual-luciferase reporter assay, chromatin immunoprecipitation-quantitative polymerase chain reaction, and yeast one-hybrid assay demonstrated that OsARF6 is an upstream transcription factor of OsAUX3
OsAUX3	Os05g0447200	LOC_Os05g37470	auxin	A Novel miR167a-OsARF6-OsAUX3 Module Regulates Grain Length and Weight in Rice	OsARF6 directly binds to the auxin response elements of the OsAUX3 promoter, covering a single nucleotide polymorphism site between 9311 and NPB/Dongjin/Hwayoung, thereby controlling GL by altering longitudinal expansion and auxin distribution/content in glume cells
OsAUX3	Os05g0447200	LOC_Os05g37470	grain	A Novel miR167a-OsARF6-OsAUX3 Module Regulates Grain Length and Weight in Rice	Herein, a quantitative trait locus qGL5 for grain length (GL) and GW was identified in recombinant inbred lines of 9311 and Nipponbare (NPB), and fine mapped to a candidate gene, OsAUX3
OsAUX3	Os05g0447200	LOC_Os05g37470	grain length	A Novel miR167a-OsARF6-OsAUX3 Module Regulates Grain Length and Weight in Rice	Herein, a quantitative trait locus qGL5 for grain length (GL) and GW was identified in recombinant inbred lines of 9311 and Nipponbare (NPB), and fine mapped to a candidate gene, OsAUX3
OsAUX3	Os05g0447200	LOC_Os05g37470	auxin response	A Novel miR167a-OsARF6-OsAUX3 Module Regulates Grain Length and Weight in Rice	OsARF6 directly binds to the auxin response elements of the OsAUX3 promoter, covering a single nucleotide polymorphism site between 9311 and NPB/Dongjin/Hwayoung, thereby controlling GL by altering longitudinal expansion and auxin distribution/content in glume cells
OsAUX5	Os11g0169200	LOC_Os11g06820	grain	Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains.	 Natural variations of OsAUX5 occur in the cis elements of its promoter, which are differentially activated because of the different binding affinity between OsWRKY78 and the W-box, contributing to grain EAA variation among rice varieties
OsAUX5	Os11g0169200	LOC_Os11g06820	essential amino acid content	Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains	Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains
OsB12D1	Os07g0604700	LOC_Os07g41350	root	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	Among the six OsB12Ds, OsB12D1 is one of the major transcripts and is primarily expressed in germinating seed and root
OsB12D1	Os07g0604700	LOC_Os07g41350	submergence	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	Bioinformatics analyses indicated that OsB12D1 is an anoxic or submergence resistance-related gene
OsB12D1	Os07g0604700	LOC_Os07g41350	growth	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.
OsB12D1	Os07g0604700	LOC_Os07g41350	growth	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	RT-PCR results showed OsB12D1 is induced remarkably in the coleoptiles or roots by flooding during seed germination and early seedling growth
OsB12D1	Os07g0604700	LOC_Os07g41350	seedling	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.
OsB12D1	Os07g0604700	LOC_Os07g41350	seedling	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	RT-PCR results showed OsB12D1 is induced remarkably in the coleoptiles or roots by flooding during seed germination and early seedling growth
OsB12D1	Os07g0604700	LOC_Os07g41350	seedling	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	This work indicated that OsB12D1 is a promising gene that can help to enhance rice seedling establishment in farming practices, especially for direct seeding
OsB12D1	Os07g0604700	LOC_Os07g41350	seed	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.
OsB12D1	Os07g0604700	LOC_Os07g41350	seed	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	Among the six OsB12Ds, OsB12D1 is one of the major transcripts and is primarily expressed in germinating seed and root
OsB12D1	Os07g0604700	LOC_Os07g41350	seed	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	RT-PCR results showed OsB12D1 is induced remarkably in the coleoptiles or roots by flooding during seed germination and early seedling growth
OsB12D1	Os07g0604700	LOC_Os07g41350	seed germination	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.
OsB12D1	Os07g0604700	LOC_Os07g41350	seed germination	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	RT-PCR results showed OsB12D1 is induced remarkably in the coleoptiles or roots by flooding during seed germination and early seedling growth
OsB12D1	Os07g0604700	LOC_Os07g41350	tolerance	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.
OsB12D1	Os07g0604700	LOC_Os07g41350	Fe	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	OsB12D1 was identified in the mitochondrion by subcellular localization analysis and possibly enhances electron transport through mediating Fe and oxygen availability under flooded conditions
OsB12D1	Os07g0604700	LOC_Os07g41350	seedling growth	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.
OsB12D1	Os07g0604700	LOC_Os07g41350	seedling growth	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	RT-PCR results showed OsB12D1 is induced remarkably in the coleoptiles or roots by flooding during seed germination and early seedling growth
OsBADH2|fgr	Os08g0424500	LOC_Os08g32870	root	RNAi-directed downregulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.)	RESULTS: The results showed that multiple mutations identical to fgr allele occur in the 13 fragrant rice accessions across China; OsBADH2 is expressed constitutively, with less expression abundance in mature roots; the disrupted OsBADH2 by RNA interference leads to significantly increased 2-acetyl-1-pyrroline production
OsBADH2|fgr	Os08g0424500	LOC_Os08g32870	sterile	Creation of Two-Line Fragrant Glutinous Hybrid Rice by Editing the Wx and OsBADH2 Genes via the CRISPR/Cas9 System.	 We edited Wx and OsBADH2 using CRISPR/Cas9 technology to produce both homozygous male sterile mutant lines and homozygous restorer mutant lines with Cas9-free
OsBAG1	Os09g0524800	LOC_Os09g35630	disease	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG1	Os09g0524800	LOC_Os09g35630	cell wall	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG1	Os09g0524800	LOC_Os09g35630	phytohormone	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG3	Os06g0126500	LOC_Os06g03640	growth	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 β-glucuronidase (GUS) staining further indicated that OsBAG3 is mainly involved in primary young tissues under both primary and secondary growth
OsBAG3	Os06g0126500	LOC_Os06g03640	disease	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG3	Os06g0126500	LOC_Os06g03640	cell wall	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG3	Os06g0126500	LOC_Os06g03640	phytohormone	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG4	Os01g0831200	LOC_Os01g61500	resistance	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Elevated levels of OsBAG4 in rice are necessary and sufficient to trigger PCD and enhanced disease resistance to pathogenic infection, most likely by activating pathogen-associated molecular patterns-triggered immunity (PTI)
OsBAG4	Os01g0831200	LOC_Os01g61500	disease	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Elevated levels of OsBAG4 in rice are necessary and sufficient to trigger PCD and enhanced disease resistance to pathogenic infection, most likely by activating pathogen-associated molecular patterns-triggered immunity (PTI)
OsBAG4	Os01g0831200	LOC_Os01g61500	disease resistance	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Elevated levels of OsBAG4 in rice are necessary and sufficient to trigger PCD and enhanced disease resistance to pathogenic infection, most likely by activating pathogen-associated molecular patterns-triggered immunity (PTI)
OsBAG4	Os01g0831200	LOC_Os01g61500	immunity	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Elevated levels of OsBAG4 in rice are necessary and sufficient to trigger PCD and enhanced disease resistance to pathogenic infection, most likely by activating pathogen-associated molecular patterns-triggered immunity (PTI)
OsBAG4	Os01g0831200	LOC_Os01g61500	PCD	An E3<U+00A0>Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum Disease Resistance.	Elevated levels of OsBAG4 in rice are necessary and sufficient to trigger PCD and enhanced disease resistance to pathogenic infection, most likely by activating pathogen-associated molecular patterns-triggered immunity (PTI)
OsBAG4	Os01g0831200	LOC_Os01g61500	disease	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG4	Os01g0831200	LOC_Os01g61500	cell wall	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG4	Os01g0831200	LOC_Os01g61500	phytohormone	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG4	Os01g0831200	LOC_Os01g61500	stress	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Intriguingly, salt stress facilitates the nuclear relocation of OsDNAJ15 so that it can interact with OsBAG4, and OsDNAJ15 and OsBAG4 synergistically facilitate the DNA-binding activity of OsMYB106 to positively regulate the expression of OsHKT1;5
OsBAG4	Os01g0831200	LOC_Os01g61500	salt	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Intriguingly, salt stress facilitates the nuclear relocation of OsDNAJ15 so that it can interact with OsBAG4, and OsDNAJ15 and OsBAG4 synergistically facilitate the DNA-binding activity of OsMYB106 to positively regulate the expression of OsHKT1;5
OsBAG4	Os01g0831200	LOC_Os01g61500	salt stress	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Intriguingly, salt stress facilitates the nuclear relocation of OsDNAJ15 so that it can interact with OsBAG4, and OsDNAJ15 and OsBAG4 synergistically facilitate the DNA-binding activity of OsMYB106 to positively regulate the expression of OsHKT1;5
OsBAG6	Os11g0506800	LOC_Os11g31060	disease	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG6	Os11g0506800	LOC_Os11g31060	cell wall	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBAG6	Os11g0506800	LOC_Os11g31060	phytohormone	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	 The co-expression analysis and the hierarchical cluster analysis indicated that the OsBAG1 and OsBAG3 were co-expressed with primary cell wall-biosynthesizing genes, OsBAG4 was co-expressed with phytohormone and transcriptional factors, and OsBAG6 was co-expressed with disease and shock-associated genes
OsBBI1	Os06g0125800	LOC_Os06g03580	cell wall	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	The OsBBI1-overexpressing plants showed higher levels of H(2)O(2) accumulation in cells and higher levels of phenolic compounds and cross-linking of proteins in cell walls at infection sites by M
OsBBI1	Os06g0125800	LOC_Os06g03580	cell wall	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	The cell walls were thicker in the OsBBI1-overexpressing plants and thinner in the mutant plants than in the WT plants
OsBBI1	Os06g0125800	LOC_Os06g03580	cell wall	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	Our results suggest that OsBBI1 modulates broad-spectrum resistance to blast fungus by modifying cell wall defence responses
OsBBI1	Os06g0125800	LOC_Os06g03580	cell wall	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence
OsBBI1	Os06g0125800	LOC_Os06g03580	blast	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	The expression of OsBBI1 was induced by rice blast fungus Magnaporthe oryzae, as well as chemical inducers, benzothiadiazole and salicylic acid
OsBBI1	Os06g0125800	LOC_Os06g03580	blast	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	This indicates that OsBBI1 modulates broad-spectrum resistance against the blast fungus
OsBBI1	Os06g0125800	LOC_Os06g03580	blast	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	Our results suggest that OsBBI1 modulates broad-spectrum resistance to blast fungus by modifying cell wall defence responses
OsBBI1	Os06g0125800	LOC_Os06g03580	disease resistance	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	We report that a rice gene, OsBBI1, encoding a RING finger protein with E3 ligase activity, mediates broad-spectrum disease resistance
OsBBI1	Os06g0125800	LOC_Os06g03580	salicylic acid	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	The expression of OsBBI1 was induced by rice blast fungus Magnaporthe oryzae, as well as chemical inducers, benzothiadiazole and salicylic acid
OsBBI1	Os06g0125800	LOC_Os06g03580	disease	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	We report that a rice gene, OsBBI1, encoding a RING finger protein with E3 ligase activity, mediates broad-spectrum disease resistance
OsBBI1	Os06g0125800	LOC_Os06g03580	disease	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	The functional characterization of OsBBI1 provides insight into the E3 ligase-mediated innate immunity, and a practical tool for constructing broad-spectrum resistance against the most destructive disease in rice
OsBBI1	Os06g0125800	LOC_Os06g03580	magnaporthe oryzae	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	The expression of OsBBI1 was induced by rice blast fungus Magnaporthe oryzae, as well as chemical inducers, benzothiadiazole and salicylic acid
OsBBI1	Os06g0125800	LOC_Os06g03580	magnaporthe oryzae	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence
OsBBPI	Os01g0124401	LOC_Os01g03360	jasmonic	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	OsBBPI was found to be rapidly induced in rice seedling leaf in response to cut, exogenous jasmonic acid (JA), and two potent protein phosphatase 2A (PP2A) inhibitors, cantharidin (CN) and endothall (EN), in a light/dark-, time- and dose-dependent manner; this induction was completely inhibited by cycloheximide (CHX), indicating a requirement for de novo protein synthesis in its induction
OsBBPI	Os01g0124401	LOC_Os01g03360	seedling	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	OsBBPI was found to be rapidly induced in rice seedling leaf in response to cut, exogenous jasmonic acid (JA), and two potent protein phosphatase 2A (PP2A) inhibitors, cantharidin (CN) and endothall (EN), in a light/dark-, time- and dose-dependent manner; this induction was completely inhibited by cycloheximide (CHX), indicating a requirement for de novo protein synthesis in its induction
OsBBPI	Os01g0124401	LOC_Os01g03360	salicylic acid	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	However, a simultaneous application of salicylic acid (SA) and abscisic acid (ABA), with JA, respectively, completely blocked OsBBPI gene expression, whereas kinetin (KN) was only partially effective
OsBBPI	Os01g0124401	LOC_Os01g03360	leaf	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	OsBBPI was found to be rapidly induced in rice seedling leaf in response to cut, exogenous jasmonic acid (JA), and two potent protein phosphatase 2A (PP2A) inhibitors, cantharidin (CN) and endothall (EN), in a light/dark-, time- and dose-dependent manner; this induction was completely inhibited by cycloheximide (CHX), indicating a requirement for de novo protein synthesis in its induction
OsBBPI	Os01g0124401	LOC_Os01g03360	ja	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	Taken together, these results suggest that among the phytohormones tested here, JA and ethylene play important role(s) in regulating OsBBPI expression, with an intimate interaction with light signals
OsBBPI	Os01g0124401	LOC_Os01g03360	phytohormone	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	Taken together, these results suggest that among the phytohormones tested here, JA and ethylene play important role(s) in regulating OsBBPI expression, with an intimate interaction with light signals
OsBBPI	Os01g0124401	LOC_Os01g03360	ethylene	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	Besides JA, it was found that the ethylene generator ethephon (ET) also had an enhancing effect on OsBBPI transcript, suggesting a direct effect of ethylene on OsBBPI expression
OsBBPI	Os01g0124401	LOC_Os01g03360	ethylene	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	Taken together, these results suggest that among the phytohormones tested here, JA and ethylene play important role(s) in regulating OsBBPI expression, with an intimate interaction with light signals
OsBBPI	Os01g0124401	LOC_Os01g03360	ABA	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	To the best of our knowledge, complete inhibition of JA-induced OsBBPI expression by SA is the first report in monocots, and with ABA in plants
OsBBPI	Os01g0124401	LOC_Os01g03360	jasmonic acid	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	OsBBPI was found to be rapidly induced in rice seedling leaf in response to cut, exogenous jasmonic acid (JA), and two potent protein phosphatase 2A (PP2A) inhibitors, cantharidin (CN) and endothall (EN), in a light/dark-, time- and dose-dependent manner; this induction was completely inhibited by cycloheximide (CHX), indicating a requirement for de novo protein synthesis in its induction
OsBBPI	Os01g0124401	LOC_Os01g03360	sa	Characterization of a rice (Oryza sativa L.) Bowman–Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors	To the best of our knowledge, complete inhibition of JA-induced OsBBPI expression by SA is the first report in monocots, and with ABA in plants
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	leaf	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	leaf	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	Transgenic LOC_Os03g24930 knockout plants generated by a CRISPR/Cas9 strategy exhibited similar early leaf senescence phenotypes as did the bbs1 mutant, which confirmed that LOC_Os03g24930 was the OsBBS1 gene
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	leaf senescence	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	leaf senescence	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	Transgenic LOC_Os03g24930 knockout plants generated by a CRISPR/Cas9 strategy exhibited similar early leaf senescence phenotypes as did the bbs1 mutant, which confirmed that LOC_Os03g24930 was the OsBBS1 gene
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	early leaf senescence	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	early leaf senescence	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	Transgenic LOC_Os03g24930 knockout plants generated by a CRISPR/Cas9 strategy exhibited similar early leaf senescence phenotypes as did the bbs1 mutant, which confirmed that LOC_Os03g24930 was the OsBBS1 gene
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	senescence	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	senescence	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	Transgenic LOC_Os03g24930 knockout plants generated by a CRISPR/Cas9 strategy exhibited similar early leaf senescence phenotypes as did the bbs1 mutant, which confirmed that LOC_Os03g24930 was the OsBBS1 gene
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	map-based cloning	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	The OsBBS1 gene was cloned by a map-based cloning strategy, and a guanine (G) insertion was found in the first exon of LOC_Os03g24930
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	salt	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	salt	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	The expression of OsBBS1 could be greatly induced by salt stress, and the bbs1 mutant exhibited hypersensitivity to salt stress
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	salt stress	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	salt stress	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	The expression of OsBBS1 could be greatly induced by salt stress, and the bbs1 mutant exhibited hypersensitivity to salt stress
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	stress	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	stress	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	The expression of OsBBS1 could be greatly induced by salt stress, and the bbs1 mutant exhibited hypersensitivity to salt stress
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	chloroplast	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	Chloroplast degradation was observed in lmm24 leaves, with decreased expression of photosynthesis-related genes and increased expression of the senescence-induced STAYGREEN (SGR) gene and other senescence-associated genes
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	growth	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	The lmm24 mutant displayed dark brown lesions in leaves and growth retardation that were not observed in wild-type ZH8015
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	resistance	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	Furthermore, lmm24 exhibited enhanced resistance to rice blast fungus Magnaporthe oryzae (M
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	defense	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	defense	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	Our data demonstrate that LMM24 regulates cell death and defense responses in rice
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	defense response	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	defense response	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	Our data demonstrate that LMM24 regulates cell death and defense responses in rice
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	blast	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	Furthermore, lmm24 exhibited enhanced resistance to rice blast fungus Magnaporthe oryzae (M
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	magnaporthe oryzae	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	Furthermore, lmm24 exhibited enhanced resistance to rice blast fungus Magnaporthe oryzae (M
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	cell death	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	cell death	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	The results of histochemical staining and TUNEL assays showed enhanced ROS accumulation and cell death in lmm24
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	cell death	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	Our data demonstrate that LMM24 regulates cell death and defense responses in rice
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	Kinase	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	Kinase	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	The LMM24 gene was identified by MutMap, and LMM24 was confirmed as a receptor-like cytoplasmic kinase 109 by amino acid sequence analysis
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	lesion	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	We identified a new rice lesion mimic mutant lmm24 from a mutant pool of indica rice cultivar &quot;ZhongHui8015&quot;
OsBBS1|OsRLCK109|LMM24	Os03g0364400	LOC_Os03g24930	lesion mimic	LMM24 Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	We identified a new rice lesion mimic mutant lmm24 from a mutant pool of indica rice cultivar &quot;ZhongHui8015&quot;
OsBBX11	Os04g0493000	LOC_Os04g41560	transcription factor	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	 In conclusion, this study identified OsBBX11 as a salt-tolerance gene, and one SNPs in the OsBBX11 promoter region can be used to identify its interacting transcription factors
OsBBX11	Os04g0493000	LOC_Os04g41560	stress	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	 Transgenic plants using knockout-based technology and demonstrated that Na(+) and K(+) in the roots of the functional-loss-type OsBBX11 were translocated largely to the leaves under 120 mmol/L NaCl compared with the wild-type, causing osbbx11 leaves to die after 12 days of salt stress due to an imbalance in osmotic pressure
OsBBX11	Os04g0493000	LOC_Os04g41560	salt	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.
OsBBX11	Os04g0493000	LOC_Os04g41560	salt	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	 Transgenic plants using knockout-based technology and demonstrated that Na(+) and K(+) in the roots of the functional-loss-type OsBBX11 were translocated largely to the leaves under 120 mmol/L NaCl compared with the wild-type, causing osbbx11 leaves to die after 12 days of salt stress due to an imbalance in osmotic pressure
OsBBX11	Os04g0493000	LOC_Os04g41560	salt	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	 This provides a theoretical basis for finding the molecular mechanism of OsBBX11 upstream and downstream regulation of salt tolerance and molecular design breeding in the future
OsBBX11	Os04g0493000	LOC_Os04g41560	tolerance	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.
OsBBX11	Os04g0493000	LOC_Os04g41560	tolerance	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	 This provides a theoretical basis for finding the molecular mechanism of OsBBX11 upstream and downstream regulation of salt tolerance and molecular design breeding in the future
OsBBX11	Os04g0493000	LOC_Os04g41560	salt tolerance	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.
OsBBX11	Os04g0493000	LOC_Os04g41560	salt tolerance	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	 This provides a theoretical basis for finding the molecular mechanism of OsBBX11 upstream and downstream regulation of salt tolerance and molecular design breeding in the future
OsBBX11	Os04g0493000	LOC_Os04g41560	salt stress	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	 Transgenic plants using knockout-based technology and demonstrated that Na(+) and K(+) in the roots of the functional-loss-type OsBBX11 were translocated largely to the leaves under 120 mmol/L NaCl compared with the wild-type, causing osbbx11 leaves to die after 12 days of salt stress due to an imbalance in osmotic pressure
OsBBX11	Os04g0493000	LOC_Os04g41560	breeding	OsBBX11 on qSTS4 links to salt tolerance at the seeding stage in Oryza sativa L. ssp. Japonica.	 This provides a theoretical basis for finding the molecular mechanism of OsBBX11 upstream and downstream regulation of salt tolerance and molecular design breeding in the future
OsBBX14	Os05g0204600	LOC_Os05g11510	leaf	OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice	OsBBX14 is highly expressed in flag leaf blades
OsBBX14	Os05g0204600	LOC_Os05g11510	floral	OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice	Thus, OsBBX14 acts as a floral repressor by promoting Hd1 expression under LD conditions, probably because of crosstalk with the circadian clock
OsBBX14	Os05g0204600	LOC_Os05g11510	heading date	OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice	OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice
OsBBX14	Os05g0204600	LOC_Os05g11510	heading date	OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice	OsBBX14-overexpression (OsBBX14-OX) lines exhibited delayed heading date under long-day (LD) and short-day (SD) conditions, whereas RNAi lines of OsBBX14 lines had similar heading dates to the WT
OsBBX14	Os05g0204600	LOC_Os05g11510	heading date	OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice	Our findings suggested that OsBBX14 regulates heading date differently under LD and SD conditions
OsBBX14	Os05g0204600	LOC_Os05g11510	nucleus	OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice	OsBBX14 is located in the nucleus and has transcriptional activation potential
OsBBX14	Os05g0204600	LOC_Os05g11510	seedlings	A Rice B-Box Protein, OsBBX14, Finely Regulates Anthocyanin Biosynthesis in Rice.	The ectopic expression of OsBBX14 in Arabidopsis resulted in a dramatic increase in anthocyanin accumulation in its seedlings
OsBBX14	Os05g0204600	LOC_Os05g11510	seedlings	OsBBX14 promotes photomorphogenesis in rice by activating OsHY5L1 expression under blue light conditions.	The OsBBX14-overexpressing (OsBBX14-OX) seedlings were hypersensitive to light, especially blue light, and exhibited dwarfism, while the OsBBX14 knock-out plants (osbbx14) were taller than wild-type plants under blue light
OsBBX14	Os05g0204600	LOC_Os05g11510	cell wall	OsBBX14 promotes photomorphogenesis in rice by activating OsHY5L1 expression under blue light conditions.	Collectively, in response to blue light, OsBBX14 promotes photomorphogenesis, probably by directly or indirectly regulating the expression of HY5L1 or other genes related to cell wall organization and dwarfism
OsBC1	Os09g0510500	LOC_Os09g33580	leaf	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
OsBC1	Os09g0510500	LOC_Os09g33580	grain	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
OsBC1	Os09g0510500	LOC_Os09g33580	grain size	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
OsBC1	Os09g0510500	LOC_Os09g33580	cell elongation	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Together, these results demonstrated that a novel protein complex consisting of OsBUL1, LO9-177 and OsBC1 is associated with the HLH-bHLH system providing new insight into the molecular functional network based on HLH-bHLH proteins for cell elongation
OsBC1	Os09g0510500	LOC_Os09g33580	height	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
OsBC1	Os09g0510500	LOC_Os09g33580	plant height	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
OsBC1L1	Os03g0301200	LOC_Os03g18910	development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	OsBC1L1 and OsBC1L8 function in stomatal development in rice
OsBC1L1	Os03g0301200	LOC_Os03g18910	development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	The expression of OsSPCH2 and OsFAMA, two genes key to stomatal development is both down-regulated in osbc1l1 osbc1l8
OsBC1L1	Os03g0301200	LOC_Os03g18910	development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Taken together, these results suggest that OsBC1L1 and OsBC1L8 play essential roles in the development of rice stomatal complex likely through their involvement in cell reproduction
OsBC1L1	Os03g0301200	LOC_Os03g18910	cell division	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Both OsBC1L1 and OsBC1L8 could be detected to be localized at the cell plate and plasma membrane during cell division of guard mother cells and subsidiary mother cells
OsBC1L1	Os03g0301200	LOC_Os03g18910	stomatal	OsBC1L1 and OsBC1L8 function in stomatal development in rice	OsBC1L1 and OsBC1L8 function in stomatal development in rice
OsBC1L1	Os03g0301200	LOC_Os03g18910	stomatal	OsBC1L1 and OsBC1L8 function in stomatal development in rice	In this study, we demonstrated that knockout either OsBC1L1 or OsBC1L8, two close homologs of OsBC1L family causes no discernible defects in rice stomatal development, however, the double knockout mutant osbc1l1 osbc1l8 exhibits excess stomatal production and stomatal clustering
OsBC1L1	Os03g0301200	LOC_Os03g18910	stomatal	OsBC1L1 and OsBC1L8 function in stomatal development in rice	OsBC1L1 overexpression also causes abnormal stomatal patterning in rice
OsBC1L1	Os03g0301200	LOC_Os03g18910	stomatal	OsBC1L1 and OsBC1L8 function in stomatal development in rice	The expression of OsSPCH2 and OsFAMA, two genes key to stomatal development is both down-regulated in osbc1l1 osbc1l8
OsBC1L1	Os03g0301200	LOC_Os03g18910	stomatal	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Taken together, these results suggest that OsBC1L1 and OsBC1L8 play essential roles in the development of rice stomatal complex likely through their involvement in cell reproduction
OsBC1L1	Os03g0301200	LOC_Os03g18910	plasma membrane	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Both OsBC1L1 and OsBC1L8 could be detected to be localized at the cell plate and plasma membrane during cell division of guard mother cells and subsidiary mother cells
OsBC1L1	Os03g0301200	LOC_Os03g18910	stomata	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Moreover, osbc1l1 osbc1l8 has many defective stomata complexes with only one subsidiary cell
OsBC1L1	Os03g0301200	LOC_Os03g18910	stomatal development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	OsBC1L1 and OsBC1L8 function in stomatal development in rice
OsBC1L1	Os03g0301200	LOC_Os03g18910	stomatal development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	In this study, we demonstrated that knockout either OsBC1L1 or OsBC1L8, two close homologs of OsBC1L family causes no discernible defects in rice stomatal development, however, the double knockout mutant osbc1l1 osbc1l8 exhibits excess stomatal production and stomatal clustering
OsBC1L1	Os03g0301200	LOC_Os03g18910	stomatal development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	The expression of OsSPCH2 and OsFAMA, two genes key to stomatal development is both down-regulated in osbc1l1 osbc1l8
OsBC1L4	Os05g0386800	LOC_Os05g32110	cellulose	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice	A decrease in cellulose content but the increase in pectin and starch contents was identified in Osbc1l4 mutants by measuring the content of wall components
OsBC1L4	Os05g0386800	LOC_Os05g32110	cellulose	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice	Correlation analysis indicated that the expression of OsBC1L4 was highly correlated to that of several primary wall-forming cellulose synthase genes (CESAs)
OsBC1L4	Os05g0386800	LOC_Os05g32110	cellulose	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice	Moreover, the expression level of several cellulose-related genes is increased in Osbc1l4 mutants, which suggests that a feedback mechanism may exist during cellulose synthesis
OsBC1L4	Os05g0386800	LOC_Os05g32110	cellulose	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice
OsBC1L4	Os05g0386800	LOC_Os05g32110	tiller	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice	Previously, a dwarf mutant with fewer tillers, Osbc1l4 (Oryza sativa brittle culm 1 like 4), was identified by screening a rice T-DNA insertion mutant library
OsBC1L4	Os05g0386800	LOC_Os05g32110	cell wall	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice	OsBC1L4 protein is mainly located in the cell wall and plasma membrane
OsBC1L4	Os05g0386800	LOC_Os05g32110	dwarf	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice	Previously, a dwarf mutant with fewer tillers, Osbc1l4 (Oryza sativa brittle culm 1 like 4), was identified by screening a rice T-DNA insertion mutant library
OsBC1L4	Os05g0386800	LOC_Os05g32110	starch	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice	A decrease in cellulose content but the increase in pectin and starch contents was identified in Osbc1l4 mutants by measuring the content of wall components
OsBC1L4	Os05g0386800	LOC_Os05g32110	culm	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice	Previously, a dwarf mutant with fewer tillers, Osbc1l4 (Oryza sativa brittle culm 1 like 4), was identified by screening a rice T-DNA insertion mutant library
OsBC1L6	Os07g0604350	None	seed	Oryza sativa Brittle Culm 1-like 6 modulates β-glucan levels in the endosperm cell wall.	These findings suggest that OsBC1L6 modulates β-glucan synthesis during endosperm cell wall formation by interacting with cellulose moieties on the plasma membrane during seed ripening
OsBC1L6	Os07g0604350	None	cellulose	Oryza sativa Brittle Culm 1-like 6 modulates β-glucan levels in the endosperm cell wall.	These findings suggest that OsBC1L6 modulates β-glucan synthesis during endosperm cell wall formation by interacting with cellulose moieties on the plasma membrane during seed ripening
OsBC1L6	Os07g0604350	None	cell wall	Oryza sativa Brittle Culm 1-like 6 modulates β-glucan levels in the endosperm cell wall.	These findings suggest that OsBC1L6 modulates β-glucan synthesis during endosperm cell wall formation by interacting with cellulose moieties on the plasma membrane during seed ripening
OsBC1L6	Os07g0604350	None	endosperm	Oryza sativa Brittle Culm 1-like 6 modulates β-glucan levels in the endosperm cell wall.	OsBC1L6 mRNA was expressed in ripening seeds during endosperm enlargement
OsBC1L6	Os07g0604350	None	endosperm	Oryza sativa Brittle Culm 1-like 6 modulates β-glucan levels in the endosperm cell wall.	These findings suggest that OsBC1L6 modulates β-glucan synthesis during endosperm cell wall formation by interacting with cellulose moieties on the plasma membrane during seed ripening
OsBC1L6	Os07g0604350	None	plasma membrane	Oryza sativa Brittle Culm 1-like 6 modulates β-glucan levels in the endosperm cell wall.	These findings suggest that OsBC1L6 modulates β-glucan synthesis during endosperm cell wall formation by interacting with cellulose moieties on the plasma membrane during seed ripening
OsBC1L8	Os07g0690900	LOC_Os07g49080	development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	OsBC1L1 and OsBC1L8 function in stomatal development in rice
OsBC1L8	Os07g0690900	LOC_Os07g49080	development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	The expression of OsSPCH2 and OsFAMA, two genes key to stomatal development is both down-regulated in osbc1l1 osbc1l8
OsBC1L8	Os07g0690900	LOC_Os07g49080	development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Taken together, these results suggest that OsBC1L1 and OsBC1L8 play essential roles in the development of rice stomatal complex likely through their involvement in cell reproduction
OsBC1L8	Os07g0690900	LOC_Os07g49080	cell division	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Both OsBC1L1 and OsBC1L8 could be detected to be localized at the cell plate and plasma membrane during cell division of guard mother cells and subsidiary mother cells
OsBC1L8	Os07g0690900	LOC_Os07g49080	stomatal	OsBC1L1 and OsBC1L8 function in stomatal development in rice	OsBC1L1 and OsBC1L8 function in stomatal development in rice
OsBC1L8	Os07g0690900	LOC_Os07g49080	stomatal	OsBC1L1 and OsBC1L8 function in stomatal development in rice	In this study, we demonstrated that knockout either OsBC1L1 or OsBC1L8, two close homologs of OsBC1L family causes no discernible defects in rice stomatal development, however, the double knockout mutant osbc1l1 osbc1l8 exhibits excess stomatal production and stomatal clustering
OsBC1L8	Os07g0690900	LOC_Os07g49080	stomatal	OsBC1L1 and OsBC1L8 function in stomatal development in rice	The expression of OsSPCH2 and OsFAMA, two genes key to stomatal development is both down-regulated in osbc1l1 osbc1l8
OsBC1L8	Os07g0690900	LOC_Os07g49080	stomatal	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Taken together, these results suggest that OsBC1L1 and OsBC1L8 play essential roles in the development of rice stomatal complex likely through their involvement in cell reproduction
OsBC1L8	Os07g0690900	LOC_Os07g49080	plasma membrane	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Both OsBC1L1 and OsBC1L8 could be detected to be localized at the cell plate and plasma membrane during cell division of guard mother cells and subsidiary mother cells
OsBC1L8	Os07g0690900	LOC_Os07g49080	stomata	OsBC1L1 and OsBC1L8 function in stomatal development in rice	Moreover, osbc1l1 osbc1l8 has many defective stomata complexes with only one subsidiary cell
OsBC1L8	Os07g0690900	LOC_Os07g49080	stomatal development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	OsBC1L1 and OsBC1L8 function in stomatal development in rice
OsBC1L8	Os07g0690900	LOC_Os07g49080	stomatal development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	In this study, we demonstrated that knockout either OsBC1L1 or OsBC1L8, two close homologs of OsBC1L family causes no discernible defects in rice stomatal development, however, the double knockout mutant osbc1l1 osbc1l8 exhibits excess stomatal production and stomatal clustering
OsBC1L8	Os07g0690900	LOC_Os07g49080	stomatal development	OsBC1L1 and OsBC1L8 function in stomatal development in rice	The expression of OsSPCH2 and OsFAMA, two genes key to stomatal development is both down-regulated in osbc1l1 osbc1l8
OsBDG1	Os11g0514400	LOC_Os11g31530	leaf	Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and Grain Size in Rice.	Transgenic rice plants with increased OsBDG1 expression exhibit increased leaf angle and grain size, which is similar to an OsBDG1 activation tagging line whereas double stranded RNA interference (dsRNAi) lines for OsBDG1 knock-down generate erect leaves with smaller grains
OsBDG1	Os11g0514400	LOC_Os11g31530	leaf	Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and Grain Size in Rice.	Moreover, transgenic rice expressing OsBDG1 under the control of OsBUL1 promoter also shows enlarged leaf bending and grain size phenotypes
OsBDG1	Os11g0514400	LOC_Os11g31530	grain	Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and Grain Size in Rice.	Transgenic rice plants with increased OsBDG1 expression exhibit increased leaf angle and grain size, which is similar to an OsBDG1 activation tagging line whereas double stranded RNA interference (dsRNAi) lines for OsBDG1 knock-down generate erect leaves with smaller grains
OsBDG1	Os11g0514400	LOC_Os11g31530	grain	Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and Grain Size in Rice.	Moreover, transgenic rice expressing OsBDG1 under the control of OsBUL1 promoter also shows enlarged leaf bending and grain size phenotypes
OsBDG1	Os11g0514400	LOC_Os11g31530	grain size	Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and Grain Size in Rice.	Transgenic rice plants with increased OsBDG1 expression exhibit increased leaf angle and grain size, which is similar to an OsBDG1 activation tagging line whereas double stranded RNA interference (dsRNAi) lines for OsBDG1 knock-down generate erect leaves with smaller grains
OsBDG1	Os11g0514400	LOC_Os11g31530	grain size	Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and Grain Size in Rice.	Moreover, transgenic rice expressing OsBDG1 under the control of OsBUL1 promoter also shows enlarged leaf bending and grain size phenotypes
OsBDG1	Os11g0514400	LOC_Os11g31530	erect	Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and Grain Size in Rice.	Transgenic rice plants with increased OsBDG1 expression exhibit increased leaf angle and grain size, which is similar to an OsBDG1 activation tagging line whereas double stranded RNA interference (dsRNAi) lines for OsBDG1 knock-down generate erect leaves with smaller grains
OsBEIIa|OsSBE4|RBE4	Os04g0409200	LOC_Os04g33460	starch	Sugary Endosperm is Modulated by Starch Branching Enzyme IIa in Rice (Oryza sativa L.).	CONCLUSIONS: Complementary interactions between the starch biosynthesis genes OsISA1 and OsBEIIa determine the mild sugary endosperm mutant, sugary-h, in rice
OsBEIIa|OsSBE4|RBE4	Os04g0409200	LOC_Os04g33460	endosperm	Sugary Endosperm is Modulated by Starch Branching Enzyme IIa in Rice (Oryza sativa L.).	Complementation tests indicated that OsBEIIa regulated the properties of sugary endosperm
OsBEIIa|OsSBE4|RBE4	Os04g0409200	LOC_Os04g33460	endosperm	Sugary Endosperm is Modulated by Starch Branching Enzyme IIa in Rice (Oryza sativa L.).	CONCLUSIONS: Complementary interactions between the starch biosynthesis genes OsISA1 and OsBEIIa determine the mild sugary endosperm mutant, sugary-h, in rice
OsBEIIa|OsSBE4|RBE4	Os04g0409200	LOC_Os04g33460	starch biosynthesis	Sugary Endosperm is Modulated by Starch Branching Enzyme IIa in Rice (Oryza sativa L.).	CONCLUSIONS: Complementary interactions between the starch biosynthesis genes OsISA1 and OsBEIIa determine the mild sugary endosperm mutant, sugary-h, in rice
OsBEIIb|OsSBEIIb	Os02g0528200	LOC_Os02g32660	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	Furthermore, OsbZIP58 was shown to bind directly to the promoters of six starch-synthesizing genes, OsAGPL3, Wx, OsSSIIa, SBE1, OsBEIIb, and ISA2, and to regulate their expression
OsBEIIb|OsSBEIIb	Os02g0528200	LOC_Os02g32660	starch	Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming	Here we investigated the effects of mutating the OsSBEIIb gene encoding starch branching enzyme IIb, which is required for amylopectin synthesis in the endosperm
OsBEIIb|OsSBEIIb	Os02g0528200	LOC_Os02g32660	starch	Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming	As anticipated, homozygous mutant plants, in which OsSBEIIb was completely inactivated by abolishing the catalytic center and C-terminal regulatory domain, produced opaque seeds with depleted starch reserves
OsBEIIb|OsSBEIIb	Os02g0528200	LOC_Os02g32660	branching	Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming	Here we investigated the effects of mutating the OsSBEIIb gene encoding starch branching enzyme IIb, which is required for amylopectin synthesis in the endosperm
OsBEIIb|OsSBEIIb	Os02g0528200	LOC_Os02g32660	endosperm	Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming	Here we investigated the effects of mutating the OsSBEIIb gene encoding starch branching enzyme IIb, which is required for amylopectin synthesis in the endosperm
OsBGal1	Os03g0165400	LOC_Os03g06940	seedling	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal1	Os03g0165400	LOC_Os03g06940	sheath	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal1	Os03g0165400	LOC_Os03g06940	shoot	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal1	Os03g0165400	LOC_Os03g06940	root	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal1	Os03g0165400	LOC_Os03g06940	leaf	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal1	Os03g0165400	LOC_Os03g06940	panicle	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The genes encoding two isoforms of β-galactosidase expressed in germinating rice and panicle, designated OsBGal1 and OsBGal2, were cloned and sequenced
OsBGal2	Os06g0573600	LOC_Os06g37560	seedling	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal2	Os06g0573600	LOC_Os06g37560	root	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal2	Os06g0573600	LOC_Os06g37560	panicle	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The genes encoding two isoforms of β-galactosidase expressed in germinating rice and panicle, designated OsBGal1 and OsBGal2, were cloned and sequenced
OsBGal2	Os06g0573600	LOC_Os06g37560	panicle	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The related OsBGal2 clone from panicle at flowering stage encodes 715 amino acid residues, including a signal peptide of 20 residues
OsBGal2	Os06g0573600	LOC_Os06g37560	shoot	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal2	Os06g0573600	LOC_Os06g37560	sheath	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal2	Os06g0573600	LOC_Os06g37560	leaf	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal2	Os06g0573600	LOC_Os06g37560	flower	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The related OsBGal2 clone from panicle at flowering stage encodes 715 amino acid residues, including a signal peptide of 20 residues
OsBGal2	Os06g0573600	LOC_Os06g37560	flower	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	Both were also expressed at low levels in flowers and immature seeds, but only the OsBGal2 transcript was found in mature seeds
OsBGal2	Os06g0573600	LOC_Os06g37560	seed	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	The two genes were found to be relatively highly expressed in seedling roots and shoots and in leaf sheath in 15~30-day-old plants, which contained major immunoreactive proteins of approximately 90 kDa for OsBGal1 protein and 55 kDa for OsBGal2 in extracts of these tissues
OsBGal2	Os06g0573600	LOC_Os06g37560	seed	Molecular characterization of β-galactosidases from germinating rice (Oryza sativa)	Both were also expressed at low levels in flowers and immature seeds, but only the OsBGal2 transcript was found in mature seeds
OsbHLH001|OsICE2	Os01g0928000	LOC_Os01g70310	cold stress	Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation	In contrast to the proteins, cold stress had little or no effect on the expression of OsICE1 and OsICE2
OsbHLH001|OsICE2	Os01g0928000	LOC_Os01g70310	transcription factor	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Furthermore, we showed that both OsICE1 and OsICE2 physically interact with OsMYBS3, a single DNA-binding repeat MYB transcription factor that is essential for cold adaptation in rice, suggesting that OsICE1/OsICE2 and OsMYBS3 probably act through specific signal transduction mechanisms to coordinate cold tolerance in rice
OsbHLH001|OsICE2	Os01g0928000	LOC_Os01g70310	seedlings	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Overexpression of OsICE1 and OsICE2 in Arabidopsis significantly enhanced the cold tolerance of Arabidopsis seedlings and improved the expression of cold-response genes
OsbHLH001|OsICE2	Os01g0928000	LOC_Os01g70310	tolerance	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Overexpression of OsICE1 and OsICE2 in Arabidopsis significantly enhanced the cold tolerance of Arabidopsis seedlings and improved the expression of cold-response genes
OsbHLH001|OsICE2	Os01g0928000	LOC_Os01g70310	tolerance	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Furthermore, we showed that both OsICE1 and OsICE2 physically interact with OsMYBS3, a single DNA-binding repeat MYB transcription factor that is essential for cold adaptation in rice, suggesting that OsICE1/OsICE2 and OsMYBS3 probably act through specific signal transduction mechanisms to coordinate cold tolerance in rice
OsbHLH001|OsICE2	Os01g0928000	LOC_Os01g70310	cold tolerance	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Overexpression of OsICE1 and OsICE2 in Arabidopsis significantly enhanced the cold tolerance of Arabidopsis seedlings and improved the expression of cold-response genes
OsbHLH001|OsICE2	Os01g0928000	LOC_Os01g70310	cold tolerance	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Furthermore, we showed that both OsICE1 and OsICE2 physically interact with OsMYBS3, a single DNA-binding repeat MYB transcription factor that is essential for cold adaptation in rice, suggesting that OsICE1/OsICE2 and OsMYBS3 probably act through specific signal transduction mechanisms to coordinate cold tolerance in rice
OsbHLH024	Os01g0575200	LOC_Os01g39330	transcription factor	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).
OsbHLH024	Os01g0575200	LOC_Os01g39330	resistance	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).
OsbHLH024	Os01g0575200	LOC_Os01g39330	salt	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).
OsbHLH024	Os01g0575200	LOC_Os01g39330	salt	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	 Herein, we used the CRISPR/Cas9 strategy to generate the gene editing mutant to investigate the role of OsbHLH024 in rice under salt stress
OsbHLH024	Os01g0575200	LOC_Os01g39330	salt	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	 These findings imply that the OsbHLH024 might play the role of a negative regulator of salt stress, which will help to understand better the molecular basis of rice production improvement under salt stress
OsbHLH024	Os01g0575200	LOC_Os01g39330	salt stress	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).
OsbHLH024	Os01g0575200	LOC_Os01g39330	salt stress	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	 Herein, we used the CRISPR/Cas9 strategy to generate the gene editing mutant to investigate the role of OsbHLH024 in rice under salt stress
OsbHLH024	Os01g0575200	LOC_Os01g39330	salt stress	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	 These findings imply that the OsbHLH024 might play the role of a negative regulator of salt stress, which will help to understand better the molecular basis of rice production improvement under salt stress
OsbHLH024	Os01g0575200	LOC_Os01g39330	stress	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).
OsbHLH024	Os01g0575200	LOC_Os01g39330	stress	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	 Herein, we used the CRISPR/Cas9 strategy to generate the gene editing mutant to investigate the role of OsbHLH024 in rice under salt stress
OsbHLH024	Os01g0575200	LOC_Os01g39330	stress	CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.).	 These findings imply that the OsbHLH024 might play the role of a negative regulator of salt stress, which will help to understand better the molecular basis of rice production improvement under salt stress
OsbHLH034	Os02g0726700	LOC_Os02g49480	resistance	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis
OsbHLH034	Os02g0726700	LOC_Os02g49480	resistance	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	Transgenic rice plants overexpressing OsbHLH034 exhibited a JA-hypersensitive phenotype and increased resistance against rice bacterial blight
OsbHLH034	Os02g0726700	LOC_Os02g49480	jasmonate	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	OsbHLH034 interacted with a Jasmonate ZIM-domain (JAZ) protein, OsJAZ9, in both plant and yeast cells
OsbHLH034	Os02g0726700	LOC_Os02g49480	ja	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	The expression of OsbHLH034 was upregulated at a late phase after JA treatment
OsbHLH034	Os02g0726700	LOC_Os02g49480	blight	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis
OsbHLH034	Os02g0726700	LOC_Os02g49480	blight	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	Transgenic rice plants overexpressing OsbHLH034 exhibited a JA-hypersensitive phenotype and increased resistance against rice bacterial blight
OsbHLH034	Os02g0726700	LOC_Os02g49480	JA	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	The expression of OsbHLH034 was upregulated at a late phase after JA treatment
OsbHLH034	Os02g0726700	LOC_Os02g49480	bacterial blight	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis
OsbHLH034	Os02g0726700	LOC_Os02g49480	bacterial blight	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	Transgenic rice plants overexpressing OsbHLH034 exhibited a JA-hypersensitive phenotype and increased resistance against rice bacterial blight
OsbHLH034	Os02g0726700	LOC_Os02g49480	defense	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	These results indicate that OsbHLH034 acts as a positive regulator of the JA-mediated defense response in rice
OsbHLH034	Os02g0726700	LOC_Os02g49480	defense response	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	These results indicate that OsbHLH034 acts as a positive regulator of the JA-mediated defense response in rice
OsbHLH034	Os02g0726700	LOC_Os02g49480	lignin	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis
OsbHLH034	Os02g0726700	LOC_Os02g49480	lignin biosynthesis	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	transcription factor	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seedlings	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The bHLH TF OsbHLH035 is a salt-induced gene that is primarily expressed in germinating seeds and seedlings
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seedlings	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Moreover, Osbhlh035 mutant seedlings are unable to recover from salt-stress treatment
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seedlings	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Consistently, sodium is over-accumulated in aerial tissues but slightly reduced in terrestrial tissues from Osbhlh035 seedlings after salt treatment
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seedlings	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Furthermore, genetic complementation can restore both the delayed seed germination and the impaired recovery of salt-treated Osbhlh035 seedlings to normal growth
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	growth	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Furthermore, genetic complementation can restore both the delayed seed germination and the impaired recovery of salt-treated Osbhlh035 seedlings to normal growth
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seedling	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seedling	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	OsbHLH035 mediates seed germination and seedling recovery after salt stress relief through the ABA-dependent and ABA-independent activation of OsHKT pathways, respectively
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Osbhlh035 mutants show delayed seed germination, particularly under salt-stress conditions
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Furthermore, genetic complementation can restore both the delayed seed germination and the impaired recovery of salt-treated Osbhlh035 seedlings to normal growth
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	OsbHLH035 mediates seed germination and seedling recovery after salt stress relief through the ABA-dependent and ABA-independent activation of OsHKT pathways, respectively
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	drought	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The expression of OsbHLH035 is induced by drought and salinity
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	salinity	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The expression of OsbHLH035 is induced by drought and salinity
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	salt	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	salt	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Consistently, sodium is over-accumulated in aerial tissues but slightly reduced in terrestrial tissues from Osbhlh035 seedlings after salt treatment
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	salt	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	OsbHLH035 mediates seed germination and seedling recovery after salt stress relief through the ABA-dependent and ABA-independent activation of OsHKT pathways, respectively
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed germination	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed germination	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Osbhlh035 mutants show delayed seed germination, particularly under salt-stress conditions
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed germination	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Furthermore, genetic complementation can restore both the delayed seed germination and the impaired recovery of salt-treated Osbhlh035 seedlings to normal growth
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed germination	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	OsbHLH035 mediates seed germination and seedling recovery after salt stress relief through the ABA-dependent and ABA-independent activation of OsHKT pathways, respectively
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	ABA	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	In parallel, abscisic acid (ABA) contents are over-accumulated, and the expression of the ABA biosynthetic genes OsABA2 and OsAAO3 is upregulated; furthermore, compared with that in wild-type (WT) seedlings, the salt-induced expression of OsABA8ox1, an ABA catabolic gene, in germinating Osbhlh035 mutant seeds is downregulated
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	salt stress	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	salt stress	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	OsbHLH035 mediates seed germination and seedling recovery after salt stress relief through the ABA-dependent and ABA-independent activation of OsHKT pathways, respectively
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	stress	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	stress	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	OsbHLH035 mediates seed germination and seedling recovery after salt stress relief through the ABA-dependent and ABA-independent activation of OsHKT pathways, respectively
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	nucleus	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Stable expression of GFP-fused OsbHLH035 in rice transgenic plants revealed that this protein is predominantly localized to the nucleus
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	ABA	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	In parallel, abscisic acid (ABA) contents are over-accumulated, and the expression of the ABA biosynthetic genes OsABA2 and OsAAO3 is upregulated; furthermore, compared with that in wild-type (WT) seedlings, the salt-induced expression of OsABA8ox1, an ABA catabolic gene, in germinating Osbhlh035 mutant seeds is downregulated
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	abscisic acid	The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	In parallel, abscisic acid (ABA) contents are over-accumulated, and the expression of the ABA biosynthetic genes OsABA2 and OsAAO3 is upregulated; furthermore, compared with that in wild-type (WT) seedlings, the salt-induced expression of OsABA8ox1, an ABA catabolic gene, in germinating Osbhlh035 mutant seeds is downregulated
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	development	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Tightly controlled expression of OsbHLH35 is critical for anther development in rice
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	development	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Our data suggest that OsbHLH35 plays an essential role in anther development in rice and the fine control of its expression is crucial to ensure proper seed production
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	spikelet	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Rice transgenic plants expressing GUS reporter gene under the control of OsbHLH35 promoter (pOsbHLH35::GUS) showed that this TF specifically accumulates in anthers at the meiosis stage and in other spikelet tissues
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	anther	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Tightly controlled expression of OsbHLH35 is critical for anther development in rice
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	anther	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Our data suggest that OsbHLH35 plays an essential role in anther development in rice and the fine control of its expression is crucial to ensure proper seed production
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Plants overexpressing OsbHLH35 presented small and curved anthers, leading to a reduction of 72 % on seed production
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	seed	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Our data suggest that OsbHLH35 plays an essential role in anther development in rice and the fine control of its expression is crucial to ensure proper seed production
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	meiosis	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Rice transgenic plants expressing GUS reporter gene under the control of OsbHLH35 promoter (pOsbHLH35::GUS) showed that this TF specifically accumulates in anthers at the meiosis stage and in other spikelet tissues
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	anther development	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Tightly controlled expression of OsbHLH35 is critical for anther development in rice
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	anther development	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Our data suggest that OsbHLH35 plays an essential role in anther development in rice and the fine control of its expression is crucial to ensure proper seed production
OsbHLH035|OsbHLH35	Os01g0159800	LOC_Os01g06640	transcriptional regulator	Tightly controlled expression of OsbHLH35 is critical for anther development in rice	Yeast one-hybrid screening identified three members of the Growth-Regulating Factor (GRF) family, OsGRF3, OsGRF4, and OsGRF11, as transcriptional regulators of OsbHLH35
OsbHLH057	Os07g0543000	LOC_Os07g35870	transcription factor	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 Using a DNA pull-down assay coupled with mass spectrometry, a basic helix-loop-helix (bHLH) transcription factor OsbHLH057 was determined to interact with the AATCA cis-element
OsbHLH057	Os07g0543000	LOC_Os07g35870	resistance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	resistance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 OsbHLH057 bound to the motif to positively regulate rice disease resistance and drought tolerance
OsbHLH057	Os07g0543000	LOC_Os07g35870	resistance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 Furthermore, overexpressing OsbHLH057 enhanced rice disease resistance and drought tolerance, while knocking out OsbHLH057 made rice more susceptible to pathogens and drought
OsbHLH057	Os07g0543000	LOC_Os07g35870	disease	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	disease	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 OsbHLH057 bound to the motif to positively regulate rice disease resistance and drought tolerance
OsbHLH057	Os07g0543000	LOC_Os07g35870	disease	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 Furthermore, overexpressing OsbHLH057 enhanced rice disease resistance and drought tolerance, while knocking out OsbHLH057 made rice more susceptible to pathogens and drought
OsbHLH057	Os07g0543000	LOC_Os07g35870	disease resistance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	disease resistance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 OsbHLH057 bound to the motif to positively regulate rice disease resistance and drought tolerance
OsbHLH057	Os07g0543000	LOC_Os07g35870	disease resistance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 Furthermore, overexpressing OsbHLH057 enhanced rice disease resistance and drought tolerance, while knocking out OsbHLH057 made rice more susceptible to pathogens and drought
OsbHLH057	Os07g0543000	LOC_Os07g35870	drought	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	drought	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 OsbHLH057 bound to the motif to positively regulate rice disease resistance and drought tolerance
OsbHLH057	Os07g0543000	LOC_Os07g35870	drought	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 Furthermore, overexpressing OsbHLH057 enhanced rice disease resistance and drought tolerance, while knocking out OsbHLH057 made rice more susceptible to pathogens and drought
OsbHLH057	Os07g0543000	LOC_Os07g35870	tolerance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	tolerance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 OsbHLH057 bound to the motif to positively regulate rice disease resistance and drought tolerance
OsbHLH057	Os07g0543000	LOC_Os07g35870	drought tolerance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	drought tolerance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 OsbHLH057 bound to the motif to positively regulate rice disease resistance and drought tolerance
OsbHLH057	Os07g0543000	LOC_Os07g35870	drought tolerance	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	 Furthermore, overexpressing OsbHLH057 enhanced rice disease resistance and drought tolerance, while knocking out OsbHLH057 made rice more susceptible to pathogens and drought
OsbHLH057	Os07g0543000	LOC_Os07g35870	chilling tolerance	bHLH57 confers chilling tolerance and grain yield improvement in rice	bHLH57 confers chilling tolerance and grain yield improvement in rice
OsbHLH057	Os07g0543000	LOC_Os07g35870	grain yield	bHLH57 confers chilling tolerance and grain yield improvement in rice	bHLH57 confers chilling tolerance and grain yield improvement in rice
OsbHLH057	Os07g0543000	LOC_Os07g35870	leaf	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 OsbHLH057 was highly expressed in the leaf blades and lowly expressed in the roots; it was mainly expressed in the stele and highly expressed in the lateral roots
OsbHLH057	Os07g0543000	LOC_Os07g35870	transcription factor	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	shoot	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 Under Fe-sufficient conditions, OsbHLH057 knockout or overexpression lines increased or decreased the shoot Fe concentration and the expression of several Fe homeostasis-related genes, respectively
OsbHLH057	Os07g0543000	LOC_Os07g35870	shoot	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 Under Fe-deficient conditions, plants with an OsbHLH057 mutation showed susceptibility to Fe deficiency and accumulated lower Fe concentrations in the shoot compared with the wild type
OsbHLH057	Os07g0543000	LOC_Os07g35870	nucleus	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 OsbHLH057 localised in the nucleus exhibited transcriptional activation activity
OsbHLH057	Os07g0543000	LOC_Os07g35870	homeostasis	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	homeostasis	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 Here, we report that OsbHLH057 is involved in regulating Fe homeostasis in rice
OsbHLH057	Os07g0543000	LOC_Os07g35870	lateral root	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 OsbHLH057 was highly expressed in the leaf blades and lowly expressed in the roots; it was mainly expressed in the stele and highly expressed in the lateral roots
OsbHLH057	Os07g0543000	LOC_Os07g35870	iron	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	Fe	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 Here, we report that OsbHLH057 is involved in regulating Fe homeostasis in rice
OsbHLH057	Os07g0543000	LOC_Os07g35870	Fe	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 In addition, OsbHLH057 was slightly induced by Fe deficiency in the shoots on the first day but was not affected by Fe availability in the roots
OsbHLH057	Os07g0543000	LOC_Os07g35870	Fe	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 Under Fe-sufficient conditions, OsbHLH057 knockout or overexpression lines increased or decreased the shoot Fe concentration and the expression of several Fe homeostasis-related genes, respectively
OsbHLH057	Os07g0543000	LOC_Os07g35870	Fe	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 Under Fe-deficient conditions, plants with an OsbHLH057 mutation showed susceptibility to Fe deficiency and accumulated lower Fe concentrations in the shoot compared with the wild type
OsbHLH057	Os07g0543000	LOC_Os07g35870	Fe	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 These results indicate that OsbHLH057 plays a positive role in regulating Fe homeostasis, at least under Fe-sufficient conditions
OsbHLH057	Os07g0543000	LOC_Os07g35870	iron homeostasis	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.
OsbHLH057	Os07g0543000	LOC_Os07g35870	Fe homeostasis	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 Here, we report that OsbHLH057 is involved in regulating Fe homeostasis in rice
OsbHLH057	Os07g0543000	LOC_Os07g35870	Fe homeostasis	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 Under Fe-sufficient conditions, OsbHLH057 knockout or overexpression lines increased or decreased the shoot Fe concentration and the expression of several Fe homeostasis-related genes, respectively
OsbHLH057	Os07g0543000	LOC_Os07g35870	Fe homeostasis	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	 These results indicate that OsbHLH057 plays a positive role in regulating Fe homeostasis, at least under Fe-sufficient conditions
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	transcription factor	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	transcription factor	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	Subgroup IVc basic helix-loop-helix transcription factors OsbHLH058 and OsbHLH059 positively regulate major iron deficiency responses in rice in a similar but distinct manner, putatively under partial control by OsHRZs
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	tolerance	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	Transgenic rice lines overexpressing OsbHLH058 showed tolerance for iron deficiency and higher iron concentration in seeds
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	Subgroup IVc basic helix-loop-helix transcription factors OsbHLH058 and OsbHLH059 positively regulate major iron deficiency responses in rice in a similar but distinct manner, putatively under partial control by OsHRZs
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	In the present study, we investigated the functions of OsbHLH058 and OsbHLH059 related to iron deficiency response
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	OsbHLH058 expression was repressed under iron deficiency, whereas the expression of OsbHLH057 and OsbHLH060 was moderately induced
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	Transgenic rice lines overexpressing OsbHLH058 showed tolerance for iron deficiency and higher iron concentration in seeds
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	Conversely, OsbHLH058 knockdown lines showed susceptibility to iron deficiency and reduced expression of many iron deficiency-inducible genes
OsbHLH058|OsPRI2	Os05g0455400	LOC_Os05g38140	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	These results indicate that OsbHLH058 and OsbHLH059 positively regulate major iron deficiency responses in a similar but distinct manner, and that this function may be partially controlled by OsHRZs
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	transcription factor	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	 The bHLH transcription factor OsbHLH061 interacts with OsPRI1, and this study used molecular, genetics, biochemical and physiological approaches to functionally characterise OsbHLH061 and how it affects Fe homeostasis
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	R protein	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	homeostasis	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	homeostasis	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	 The bHLH transcription factor OsbHLH061 interacts with OsPRI1, and this study used molecular, genetics, biochemical and physiological approaches to functionally characterise OsbHLH061 and how it affects Fe homeostasis
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	iron	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	Fe	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	 The bHLH transcription factor OsbHLH061 interacts with OsPRI1, and this study used molecular, genetics, biochemical and physiological approaches to functionally characterise OsbHLH061 and how it affects Fe homeostasis
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	Fe	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	 OsbHLH061 knockout or overexpression lines increase or decrease Fe accumulation in shoots respectively
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	iron homeostasis	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	Fe accumulation	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	 OsbHLH061 knockout or overexpression lines increase or decrease Fe accumulation in shoots respectively
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	Fe homeostasis	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	 The bHLH transcription factor OsbHLH061 interacts with OsPRI1, and this study used molecular, genetics, biochemical and physiological approaches to functionally characterise OsbHLH061 and how it affects Fe homeostasis
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	breeding	OsbHLHq11, the Basic Helix-Loop-Helix Transcription Factor, Involved in Regulation of Chlorophyll Content in Rice.	 OsbHLHq11 is expected to increase photosynthetic efficiency by being involved in the chlorophyll content, and is expected to be utilized as a new genetic resource for breeding high-yield rice
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	chlorophyll	OsbHLHq11, the Basic Helix-Loop-Helix Transcription Factor, Involved in Regulation of Chlorophyll Content in Rice.	 OsbHLHq11 was finally selected through screening of genes related to chlorophyll content in the RM26981-RM287 region
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	chlorophyll	OsbHLHq11, the Basic Helix-Loop-Helix Transcription Factor, Involved in Regulation of Chlorophyll Content in Rice.	 The relative expression level of the gene of OsbHLHq11 was highly expressed in cultivars with low chlorophyll content, and is expected to have a similar function to BHLH62 of the Gramineae genus
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	chlorophyll	OsbHLHq11, the Basic Helix-Loop-Helix Transcription Factor, Involved in Regulation of Chlorophyll Content in Rice.	 OsbHLHq11 is expected to increase photosynthetic efficiency by being involved in the chlorophyll content, and is expected to be utilized as a new genetic resource for breeding high-yield rice
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	chlorophyll content	OsbHLHq11, the Basic Helix-Loop-Helix Transcription Factor, Involved in Regulation of Chlorophyll Content in Rice.	 OsbHLHq11 was finally selected through screening of genes related to chlorophyll content in the RM26981-RM287 region
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	chlorophyll content	OsbHLHq11, the Basic Helix-Loop-Helix Transcription Factor, Involved in Regulation of Chlorophyll Content in Rice.	 The relative expression level of the gene of OsbHLHq11 was highly expressed in cultivars with low chlorophyll content, and is expected to have a similar function to BHLH62 of the Gramineae genus
OsbHLH061|OsbHLHq11	Os11g0601650|Os11g0601700	LOC_Os11g38870	chlorophyll content	OsbHLHq11, the Basic Helix-Loop-Helix Transcription Factor, Involved in Regulation of Chlorophyll Content in Rice.	 OsbHLHq11 is expected to increase photosynthetic efficiency by being involved in the chlorophyll content, and is expected to be utilized as a new genetic resource for breeding high-yield rice
OsbHLH067	Os05g0501200	LOC_Os05g42180	panicle	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 OsbHLH069 functions redundantly with OsbHLH067 and OsbHLH068 in panicle AM formation
OsbHLH068	Os04g0631600	LOC_Os04g53990	panicle	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 OsbHLH069 functions redundantly with OsbHLH067 and OsbHLH068 in panicle AM formation
OsbHLH069	Os01g0784900	LOC_Os01g57580	development	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 Collectively, our study demonstrates that OsbHLH067, OsbHLH068, and OsbHLH069 have redundant functions in regulating the formation of inflorescence AMs during panicle development in rice
OsbHLH069	Os01g0784900	LOC_Os01g57580	panicle	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 OsbHLH069 functions redundantly with OsbHLH067 and OsbHLH068 in panicle AM formation
OsbHLH069	Os01g0784900	LOC_Os01g57580	panicle	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 Collectively, our study demonstrates that OsbHLH067, OsbHLH068, and OsbHLH069 have redundant functions in regulating the formation of inflorescence AMs during panicle development in rice
OsbHLH069	Os01g0784900	LOC_Os01g57580	R protein	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 OsbHLH067, OsbHLH068, and OsbHLH069 were preferentially expressed in the developing inflorescence AMs and their proteins could physically interact with LAX1
OsbHLH069	Os01g0784900	LOC_Os01g57580	meristem	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.
OsbHLH069	Os01g0784900	LOC_Os01g57580	inflorescence	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.
OsbHLH069	Os01g0784900	LOC_Os01g57580	inflorescence	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 Inflorescence AM deficiency in nsp1-D could be ascribed to the overexpression of OsbHLH069
OsbHLH069	Os01g0784900	LOC_Os01g57580	inflorescence	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 OsbHLH067, OsbHLH068, and OsbHLH069 were preferentially expressed in the developing inflorescence AMs and their proteins could physically interact with LAX1
OsbHLH069	Os01g0784900	LOC_Os01g57580	inflorescence	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 Collectively, our study demonstrates that OsbHLH067, OsbHLH068, and OsbHLH069 have redundant functions in regulating the formation of inflorescence AMs during panicle development in rice
OsbHLH069	Os01g0784900	LOC_Os01g57580	axillary meristem	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.
OsbHLH069	Os01g0784900	LOC_Os01g57580	panicle development	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	 Collectively, our study demonstrates that OsbHLH067, OsbHLH068, and OsbHLH069 have redundant functions in regulating the formation of inflorescence AMs during panicle development in rice
OsbHLH073	Os05g0228400	LOC_Os05g14010	panicle	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	We report that OsbHLH073 participates in regulating plant height, internode elongation, and panicle exsertion by regulating GA biosynthesis associated with the OsKO1 and OsKO2 genes
OsbHLH073	Os05g0228400	LOC_Os05g14010	homeostasis	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.
OsbHLH073	Os05g0228400	LOC_Os05g14010	ga	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.
OsbHLH073	Os05g0228400	LOC_Os05g14010	ga	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	We report that OsbHLH073 participates in regulating plant height, internode elongation, and panicle exsertion by regulating GA biosynthesis associated with the OsKO1 and OsKO2 genes
OsbHLH073	Os05g0228400	LOC_Os05g14010	height	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.
OsbHLH073	Os05g0228400	LOC_Os05g14010	plant height	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.
OsbHLH073	Os05g0228400	LOC_Os05g14010	plant height	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	We report that OsbHLH073 participates in regulating plant height, internode elongation, and panicle exsertion by regulating GA biosynthesis associated with the OsKO1 and OsKO2 genes
OsbHLH073	Os05g0228400	LOC_Os05g14010	GA	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.
OsbHLH073	Os05g0228400	LOC_Os05g14010	GA	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	We report that OsbHLH073 participates in regulating plant height, internode elongation, and panicle exsertion by regulating GA biosynthesis associated with the OsKO1 and OsKO2 genes
OsbHLH073	Os05g0228400	LOC_Os05g14010	transcriptional activator	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	Yeast two-hybrid and localization assays showed that the OsbHLH073 protein is a nuclear localized-transcriptional activator
OsbHLH073	Os05g0228400	LOC_Os05g14010	GA biosynthesis	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	We report that OsbHLH073 participates in regulating plant height, internode elongation, and panicle exsertion by regulating GA biosynthesis associated with the OsKO1 and OsKO2 genes
OsbHLH073	Os05g0228400	LOC_Os05g14010	internode elongation	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.
OsbHLH073	Os05g0228400	LOC_Os05g14010	internode elongation	OsbHLH073 Negatively Regulates Internode Elongation and Plant Height by Modulating GA Homeostasis in Rice.	We report that OsbHLH073 participates in regulating plant height, internode elongation, and panicle exsertion by regulating GA biosynthesis associated with the OsKO1 and OsKO2 genes
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	ABA	A rice transcription factor OsbHLH1 is involved in cold stress response	The transcription of the OsbHLH1 gene was specifically induced in roots of rice seedlings by cold but not by NaCl, PEG and ABA treatments
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	root	A rice transcription factor OsbHLH1 is involved in cold stress response	The transcription of the OsbHLH1 gene was specifically induced in roots of rice seedlings by cold but not by NaCl, PEG and ABA treatments
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	seedling	A rice transcription factor OsbHLH1 is involved in cold stress response	The transcription of the OsbHLH1 gene was specifically induced in roots of rice seedlings by cold but not by NaCl, PEG and ABA treatments
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	cold stress	A rice transcription factor OsbHLH1 is involved in cold stress response	A rice transcription factor OsbHLH1 is involved in cold stress response
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	transcription factor	A rice transcription factor OsbHLH1 is involved in cold stress response	These results indicate that the OsbHLH1 may function as a transcription factor in a cold signal-transduction pathway
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	transcription factor	A rice transcription factor OsbHLH1 is involved in cold stress response	A rice transcription factor OsbHLH1 is involved in cold stress response
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	transcription factor	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 interacts with several bHLH transcription factors including OsbHLH062 via the Jas domain
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	transporter	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsbHLH062 can bind to an E-box in the promoters of the ion transporter genes such as OsHAK21, and most of these ion transporter genes are responsive to JA treatment
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	ja	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsbHLH062 can bind to an E-box in the promoters of the ion transporter genes such as OsHAK21, and most of these ion transporter genes are responsive to JA treatment
OsbHLH1|OsbHLH062	Os07g0628500	LOC_Os07g43530	JA	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsbHLH062 can bind to an E-box in the promoters of the ion transporter genes such as OsHAK21, and most of these ion transporter genes are responsive to JA treatment
OsbHLH107	Os02g0805250	LOC_Os02g56140	transcription factor	Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.).	OsbHLH107 is a nucleus-localized bHLH transcription factor, which can form a homodimer with itself
OsbHLH107	Os02g0805250	LOC_Os02g56140	grain	Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.).	We concluded that OsbHLH107 and its homologs are important regulators of grain size development and might be useful for grain yield improvement in rice
OsbHLH107	Os02g0805250	LOC_Os02g56140	development	Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.).	We concluded that OsbHLH107 and its homologs are important regulators of grain size development and might be useful for grain yield improvement in rice
OsbHLH107	Os02g0805250	LOC_Os02g56140	grain yield	Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.).	We concluded that OsbHLH107 and its homologs are important regulators of grain size development and might be useful for grain yield improvement in rice
OsbHLH107	Os02g0805250	LOC_Os02g56140	yield	Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.).	We concluded that OsbHLH107 and its homologs are important regulators of grain size development and might be useful for grain yield improvement in rice
OsbHLH107	Os02g0805250	LOC_Os02g56140	grain size	Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.).	We concluded that OsbHLH107 and its homologs are important regulators of grain size development and might be useful for grain yield improvement in rice
OsbHLH133	Os12g0508500	LOC_Os12g32400	iron	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa
OsbHLH133	Os12g0508500	LOC_Os12g32400	root	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa	Insertional inactivation of OsbHLH133 (bhlh133) resulted in growth retardation, with enhanced Fe concentration seen in shoots, and reduced Fe concentration in roots
OsbHLH133	Os12g0508500	LOC_Os12g32400	root	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa	Overexpression of OsbHLH133 had the opposite effect, that is resulted in an enhanced Fe concentration in roots and reduced Fe concentration in shoots and also in xylem sap
OsbHLH133	Os12g0508500	LOC_Os12g32400	root	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa
OsbHLH133	Os12g0508500	LOC_Os12g32400	growth	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa	Insertional inactivation of OsbHLH133 (bhlh133) resulted in growth retardation, with enhanced Fe concentration seen in shoots, and reduced Fe concentration in roots
OsbHLH133	Os12g0508500	LOC_Os12g32400	xylem	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa	Overexpression of OsbHLH133 had the opposite effect, that is resulted in an enhanced Fe concentration in roots and reduced Fe concentration in shoots and also in xylem sap
OsbHLH133	Os12g0508500	LOC_Os12g32400	shoot	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa	Insertional inactivation of OsbHLH133 (bhlh133) resulted in growth retardation, with enhanced Fe concentration seen in shoots, and reduced Fe concentration in roots
OsbHLH133	Os12g0508500	LOC_Os12g32400	shoot	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa	Overexpression of OsbHLH133 had the opposite effect, that is resulted in an enhanced Fe concentration in roots and reduced Fe concentration in shoots and also in xylem sap
OsbHLH133	Os12g0508500	LOC_Os12g32400	shoot	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa
OsbHLH138	Os03g0391700	LOC_Os03g27390	transcription factor	The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of TMS5.	The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of TMS5.
OsbHLH138	Os03g0391700	LOC_Os03g27390	sterility	The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of TMS5.	The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of TMS5.
OsbHLH138	Os03g0391700	LOC_Os03g27390	development	The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of TMS5.	The identification of OsbHLH138 provides breeders a new choice for development of TGMS rice lines, which will favor the sustainable development of two-line hybrid rice
OsbHLH138	Os03g0391700	LOC_Os03g27390	male sterility	The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of TMS5.	The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of TMS5.
OsbHLH148	Os03g0741100	LOC_Os03g53020	jasmonate	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Here, we report the results of a study using a functional genomics approach that identified a rice basic helix-loop-helix domain gene, OsbHLH148, that conferred drought tolerance as a component of the jasmonate signaling module in rice
OsbHLH148	Os03g0741100	LOC_Os03g53020	jasmonate	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	OsbHLH148 transcript levels were rapidly increased by treatment with methyl jasmonate (MeJA) or abscisic acid, and abiotic stresses including dehydration, high salinity, low temperature and wounding
OsbHLH148	Os03g0741100	LOC_Os03g53020	jasmonate	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	These results show that OsJAZ1 could act as a transcriptional regulator of the OsbHLH148-related jasmonate signaling pathway leading to drought tolerance
OsbHLH148	Os03g0741100	LOC_Os03g53020	jasmonate	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Thus, our study suggests that OsbHLH148 acts on an initial response of jasmonate-regulated gene expression toward drought tolerance, constituting the OsbHLH148-OsJAZ-OsCOI1 signaling module in rice
OsbHLH148	Os03g0741100	LOC_Os03g53020	jasmonate	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice
OsbHLH148	Os03g0741100	LOC_Os03g53020	salinity	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	OsbHLH148 transcript levels were rapidly increased by treatment with methyl jasmonate (MeJA) or abscisic acid, and abiotic stresses including dehydration, high salinity, low temperature and wounding
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought tolerance	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Here, we report the results of a study using a functional genomics approach that identified a rice basic helix-loop-helix domain gene, OsbHLH148, that conferred drought tolerance as a component of the jasmonate signaling module in rice
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought tolerance	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	These results show that OsJAZ1 could act as a transcriptional regulator of the OsbHLH148-related jasmonate signaling pathway leading to drought tolerance
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought tolerance	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Thus, our study suggests that OsbHLH148 acts on an initial response of jasmonate-regulated gene expression toward drought tolerance, constituting the OsbHLH148-OsJAZ-OsCOI1 signaling module in rice
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought tolerance	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice
OsbHLH148	Os03g0741100	LOC_Os03g53020	temperature	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	OsbHLH148 transcript levels were rapidly increased by treatment with methyl jasmonate (MeJA) or abscisic acid, and abiotic stresses including dehydration, high salinity, low temperature and wounding
OsbHLH148	Os03g0741100	LOC_Os03g53020	abiotic stress	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	OsbHLH148 transcript levels were rapidly increased by treatment with methyl jasmonate (MeJA) or abscisic acid, and abiotic stresses including dehydration, high salinity, low temperature and wounding
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Here, we report the results of a study using a functional genomics approach that identified a rice basic helix-loop-helix domain gene, OsbHLH148, that conferred drought tolerance as a component of the jasmonate signaling module in rice
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Transgenic over-expression of OsbHLH148 in rice confers plant tolerance to drought stress
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	These results show that OsJAZ1 could act as a transcriptional regulator of the OsbHLH148-related jasmonate signaling pathway leading to drought tolerance
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Thus, our study suggests that OsbHLH148 acts on an initial response of jasmonate-regulated gene expression toward drought tolerance, constituting the OsbHLH148-OsJAZ-OsCOI1 signaling module in rice
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Yeast one-hybrid, electrophoretic mobility shift, and dual-luciferase assays showed that OsWRKY76 and OsbHLH148 bound directly to the OsDREB1E promoter and activated OsDREB1E expression in response to drought stress
OsbHLH148	Os03g0741100	LOC_Os03g53020	stress	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Yeast one-hybrid, electrophoretic mobility shift, and dual-luciferase assays showed that OsWRKY76 and OsbHLH148 bound directly to the OsDREB1E promoter and activated OsDREB1E expression in response to drought stress
OsbHLH148	Os03g0741100	LOC_Os03g53020	drought stress	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Yeast one-hybrid, electrophoretic mobility shift, and dual-luciferase assays showed that OsWRKY76 and OsbHLH148 bound directly to the OsDREB1E promoter and activated OsDREB1E expression in response to drought stress
OsbHLH156	Os04g0381700	LOC_Os04g31290	transcription factor	A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localizing IRO2 to the nucleus in rice.	A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localizing IRO2 to the nucleus in rice.
OsbHLH156	Os04g0381700	LOC_Os04g31290	transcription factor	A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localizing IRO2 to the nucleus in rice.	Using RNA-seq analyses, we identified a novel bHLH-type transcription factor, OsbHLH156
OsbHLH156	Os04g0381700	LOC_Os04g31290	nucleus	A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localizing IRO2 to the nucleus in rice.	A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localizing IRO2 to the nucleus in rice.
OsbHLH156	Os04g0381700	LOC_Os04g31290	homeostasis	A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localizing IRO2 to the nucleus in rice.	The function of OsbHLH156 in Fe homeostasis was analyzed by characterization of the phenotypes, elemental content, transcriptome, interaction and subcellular localization of OsbHLH156 and IRO2
OsbHLH156	Os04g0381700	LOC_Os04g31290	iron	A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localizing IRO2 to the nucleus in rice.	A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localizing IRO2 to the nucleus in rice.
OsbHLH38	Os08g0432800	LOC_Os08g33590	transcription factor	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 A salt-responsive transcription factor, OsDREB2A, interacted with OsbHLH38 and was directly regulated by OsbHLH38
OsbHLH38	Os08g0432800	LOC_Os08g33590	transcription factor	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Moreover, OsbHLH38 affected rice abiotic stress tolerance by mediating the expression of a large set of transporter genes of phytohormones, transcription factor genes, and many downstream genes with diverse functions, including photosynthesis, redox homeostasis, and abiotic stress responsiveness
OsbHLH38	Os08g0432800	LOC_Os08g33590	stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Overexpression of OsbHLH38 increased seedling salt tolerance, while knockout of OsbHLH38 increased sensitivity to salt stress
OsbHLH38	Os08g0432800	LOC_Os08g33590	stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Moreover, OsbHLH38 affected rice abiotic stress tolerance by mediating the expression of a large set of transporter genes of phytohormones, transcription factor genes, and many downstream genes with diverse functions, including photosynthesis, redox homeostasis, and abiotic stress responsiveness
OsbHLH38	Os08g0432800	LOC_Os08g33590	stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 These results demonstrated that OsbHLH38 is a key regulator in plant abiotic stress tolerance
OsbHLH38	Os08g0432800	LOC_Os08g33590	seedling	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Overexpression of OsbHLH38 increased seedling salt tolerance, while knockout of OsbHLH38 increased sensitivity to salt stress
OsbHLH38	Os08g0432800	LOC_Os08g33590	salt	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Overexpression of OsbHLH38 increased seedling salt tolerance, while knockout of OsbHLH38 increased sensitivity to salt stress
OsbHLH38	Os08g0432800	LOC_Os08g33590	tolerance	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Moreover, OsbHLH38 affected rice abiotic stress tolerance by mediating the expression of a large set of transporter genes of phytohormones, transcription factor genes, and many downstream genes with diverse functions, including photosynthesis, redox homeostasis, and abiotic stress responsiveness
OsbHLH38	Os08g0432800	LOC_Os08g33590	tolerance	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 These results demonstrated that OsbHLH38 is a key regulator in plant abiotic stress tolerance
OsbHLH38	Os08g0432800	LOC_Os08g33590	abiotic stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Comprehensive functional analyses using knockout and overexpression transgenic lines revealed that OsbHLH38 expression was responsive to multiple abiotic stresses
OsbHLH38	Os08g0432800	LOC_Os08g33590	abiotic stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Moreover, OsbHLH38 affected rice abiotic stress tolerance by mediating the expression of a large set of transporter genes of phytohormones, transcription factor genes, and many downstream genes with diverse functions, including photosynthesis, redox homeostasis, and abiotic stress responsiveness
OsbHLH38	Os08g0432800	LOC_Os08g33590	abiotic stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 These results demonstrated that OsbHLH38 is a key regulator in plant abiotic stress tolerance
OsbHLH38	Os08g0432800	LOC_Os08g33590	salt tolerance	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Overexpression of OsbHLH38 increased seedling salt tolerance, while knockout of OsbHLH38 increased sensitivity to salt stress
OsbHLH38	Os08g0432800	LOC_Os08g33590	salt stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Overexpression of OsbHLH38 increased seedling salt tolerance, while knockout of OsbHLH38 increased sensitivity to salt stress
OsbHLH38	Os08g0432800	LOC_Os08g33590	biotic stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Comprehensive functional analyses using knockout and overexpression transgenic lines revealed that OsbHLH38 expression was responsive to multiple abiotic stresses
OsbHLH38	Os08g0432800	LOC_Os08g33590	biotic stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Moreover, OsbHLH38 affected rice abiotic stress tolerance by mediating the expression of a large set of transporter genes of phytohormones, transcription factor genes, and many downstream genes with diverse functions, including photosynthesis, redox homeostasis, and abiotic stress responsiveness
OsbHLH38	Os08g0432800	LOC_Os08g33590	biotic stress	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 These results demonstrated that OsbHLH38 is a key regulator in plant abiotic stress tolerance
OsbHLH38	Os08g0432800	LOC_Os08g33590	stress tolerance	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Moreover, OsbHLH38 affected rice abiotic stress tolerance by mediating the expression of a large set of transporter genes of phytohormones, transcription factor genes, and many downstream genes with diverse functions, including photosynthesis, redox homeostasis, and abiotic stress responsiveness
OsbHLH38	Os08g0432800	LOC_Os08g33590	stress tolerance	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 These results demonstrated that OsbHLH38 is a key regulator in plant abiotic stress tolerance
OsbHLH38	Os08g0432800	LOC_Os08g33590	transporter	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Moreover, OsbHLH38 affected rice abiotic stress tolerance by mediating the expression of a large set of transporter genes of phytohormones, transcription factor genes, and many downstream genes with diverse functions, including photosynthesis, redox homeostasis, and abiotic stress responsiveness
OsbHLH38	Os08g0432800	LOC_Os08g33590	redox homeostasis	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	 Moreover, OsbHLH38 affected rice abiotic stress tolerance by mediating the expression of a large set of transporter genes of phytohormones, transcription factor genes, and many downstream genes with diverse functions, including photosynthesis, redox homeostasis, and abiotic stress responsiveness
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	root	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	Moreover, transcriptional analysis revealed that mechanical wounding and treatment with MeJA resulted in an obvious increase in transcript levels of OsbHLH59 and OsERF71 in root and shoot tissues
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	shoot	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	Moreover, transcriptional analysis revealed that mechanical wounding and treatment with MeJA resulted in an obvious increase in transcript levels of OsbHLH59 and OsERF71 in root and shoot tissues
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	wounding	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	Moreover, transcriptional analysis revealed that mechanical wounding and treatment with MeJA resulted in an obvious increase in transcript levels of OsbHLH59 and OsERF71 in root and shoot tissues
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	transcription factor	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	transcription factor	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	Subgroup IVc basic helix-loop-helix transcription factors OsbHLH058 and OsbHLH059 positively regulate major iron deficiency responses in rice in a similar but distinct manner, putatively under partial control by OsHRZs
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	Subgroup IVc basic helix-loop-helix transcription factors OsbHLH058 and OsbHLH059 positively regulate major iron deficiency responses in rice in a similar but distinct manner, putatively under partial control by OsHRZs
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	In the present study, we investigated the functions of OsbHLH058 and OsbHLH059 related to iron deficiency response
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	OsbHLH059 knockdown lines were also susceptible to iron deficiency, and formed characteristic brownish regions in iron-deficient new leaves
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	OsbHLH059 knockdown lines also showed reduced expression of many iron deficiency-inducible genes
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	iron	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	These results indicate that OsbHLH058 and OsbHLH059 positively regulate major iron deficiency responses in a similar but distinct manner, and that this function may be partially controlled by OsHRZs
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	homeostasis	Oryza sativa POSITIVE REGULATOR OF IRON DEFICIENCY RESPONSE 2 (OsPRI2) and OsPRI3 are involved in the maintenance of Fe homeostasis.	We also provide evidence that OsPRI2 and OsPRI3 bind to the promoters of OsIRO2 and OsIRO3, two key regulators of Fe homeostasis
OsbHLH59|OsbHLH059|OsPRI3	Os02g0116600	LOC_Os02g02480	iron	Oryza sativa POSITIVE REGULATOR OF IRON DEFICIENCY RESPONSE 2 (OsPRI2) and OsPRI3 are involved in the maintenance of Fe homeostasis.	Oryza sativa POSITIVE REGULATOR OF IRON DEFICIENCY RESPONSE 2 (OsPRI2) and OsPRI3 are involved in the maintenance of Fe homeostasis.
OsbHLH65	Os04g0493100	LOC_Os04g41570	brown planthopper	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	Both OsMPK3 and OsbHLH65 were induced by treatments with rice blast (Magnaporthe grisea), brown planthopper (Nilaparvata lugens), and defense-related hormones, such as methyl jasmonic acid and salicylic acid
OsbHLH65	Os04g0493100	LOC_Os04g41570	salicylic acid	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	Both OsMPK3 and OsbHLH65 were induced by treatments with rice blast (Magnaporthe grisea), brown planthopper (Nilaparvata lugens), and defense-related hormones, such as methyl jasmonic acid and salicylic acid
OsbHLH65	Os04g0493100	LOC_Os04g41570	blast	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	Both OsMPK3 and OsbHLH65 were induced by treatments with rice blast (Magnaporthe grisea), brown planthopper (Nilaparvata lugens), and defense-related hormones, such as methyl jasmonic acid and salicylic acid
OsbHLH65	Os04g0493100	LOC_Os04g41570	stress	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	OsMPK3 and OsbHLH65 are induced by biotic stress and defense-related hormones
OsbHLH65	Os04g0493100	LOC_Os04g41570	nucleus	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	OsMPK3 is a TEY-type rice MAPK belonging to Group C and directly phosphorylates OsbHLH65 in the nucleus
OsbHLH65	Os04g0493100	LOC_Os04g41570	nucleus	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	In the study reported here, we determined that a TEY-type rice MAPK belonging to subgroup C, named OsMPK3, phosphorylates its substrate OsbHLH65 in the nucleus
OsbHLH65	Os04g0493100	LOC_Os04g41570	biotic stress	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	OsMPK3 and OsbHLH65 are induced by biotic stress and defense-related hormones
OsbHLH65	Os04g0493100	LOC_Os04g41570	jasmonic	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	Both OsMPK3 and OsbHLH65 were induced by treatments with rice blast (Magnaporthe grisea), brown planthopper (Nilaparvata lugens), and defense-related hormones, such as methyl jasmonic acid and salicylic acid
OsbHLH65	Os04g0493100	LOC_Os04g41570	jasmonic acid	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	Both OsMPK3 and OsbHLH65 were induced by treatments with rice blast (Magnaporthe grisea), brown planthopper (Nilaparvata lugens), and defense-related hormones, such as methyl jasmonic acid and salicylic acid
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	jasmonate	OsHLH61-OsbHLH96 influences rice defense to brown planthopper through regulating the pathogen-related genes.	 Besides, OsbHLH96 might interact with Jasmonate Zim-Domain3 (OsJAZ3)
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	transcription factor	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	grain	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 The expression levels of genes coding for starch (OsAGPL1, OsSSIIa, OsWx, and OsFLO2) and seed storage proteins (GluA1 and Globulin 1) were significantly decreased, indicating that they synthesize less store starch and proteins, resulting in grain chalkiness in the osbhlh044 (OsHKT1;3, OsHAK7, OsSOS1, OsSOS2, OsNHX2, and OsLEA3 but not OsHKT2;1), and starch-related genes (OsSSIIa, OsWx, and OsFLO2) by binding to the G-boxes of their promoters
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	grain	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Therefore, the OsbHLH044 gene editing mutants revealed multiple functions, specifically a positive regulator of salt stress and grain quality, which might bring new insights into the breeding of rice varieties
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	stress	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Notably, the osbhlh044 mutants resulted in prominently reduced morphological and physiological parameters under salt stress
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	stress	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Moreover, the expression of ion homeostasis-related genes (OsHKTs, OsHAK, OsSOSs, and OsNHX) and ABA-responsive gene (OsLEA3) was significantly altered in the osbhlh044 mutants after salt stress
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	stress	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Therefore, the OsbHLH044 gene editing mutants revealed multiple functions, specifically a positive regulator of salt stress and grain quality, which might bring new insights into the breeding of rice varieties
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	seed	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 The expression levels of genes coding for starch (OsAGPL1, OsSSIIa, OsWx, and OsFLO2) and seed storage proteins (GluA1 and Globulin 1) were significantly decreased, indicating that they synthesize less store starch and proteins, resulting in grain chalkiness in the osbhlh044 (OsHKT1;3, OsHAK7, OsSOS1, OsSOS2, OsNHX2, and OsLEA3 but not OsHKT2;1), and starch-related genes (OsSSIIa, OsWx, and OsFLO2) by binding to the G-boxes of their promoters
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	starch	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 The expression levels of genes coding for starch (OsAGPL1, OsSSIIa, OsWx, and OsFLO2) and seed storage proteins (GluA1 and Globulin 1) were significantly decreased, indicating that they synthesize less store starch and proteins, resulting in grain chalkiness in the osbhlh044 (OsHKT1;3, OsHAK7, OsSOS1, OsSOS2, OsNHX2, and OsLEA3 but not OsHKT2;1), and starch-related genes (OsSSIIa, OsWx, and OsFLO2) by binding to the G-boxes of their promoters
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	grain quality	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Therefore, the OsbHLH044 gene editing mutants revealed multiple functions, specifically a positive regulator of salt stress and grain quality, which might bring new insights into the breeding of rice varieties
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salinity	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salinity	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Lower antioxidant activities and higher lipid peroxidation and hydrogen peroxide (H(2)O(2)) accumulation in the osbhlh044 mutants caused salinity sensitivity due to elevated reactive oxygen species (ROS)
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salt	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Notably, the osbhlh044 mutants resulted in prominently reduced morphological and physiological parameters under salt stress
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salt	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Under salt stress, both shoots and roots of the osbhlh044 mutants acquired higher Na(+)
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salt	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Moreover, the expression of ion homeostasis-related genes (OsHKTs, OsHAK, OsSOSs, and OsNHX) and ABA-responsive gene (OsLEA3) was significantly altered in the osbhlh044 mutants after salt stress
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salt	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Therefore, the OsbHLH044 gene editing mutants revealed multiple functions, specifically a positive regulator of salt stress and grain quality, which might bring new insights into the breeding of rice varieties
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salt stress	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Notably, the osbhlh044 mutants resulted in prominently reduced morphological and physiological parameters under salt stress
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salt stress	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Under salt stress, both shoots and roots of the osbhlh044 mutants acquired higher Na(+)
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salt stress	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Moreover, the expression of ion homeostasis-related genes (OsHKTs, OsHAK, OsSOSs, and OsNHX) and ABA-responsive gene (OsLEA3) was significantly altered in the osbhlh044 mutants after salt stress
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	salt stress	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Therefore, the OsbHLH044 gene editing mutants revealed multiple functions, specifically a positive regulator of salt stress and grain quality, which might bring new insights into the breeding of rice varieties
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	breeding	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Therefore, the OsbHLH044 gene editing mutants revealed multiple functions, specifically a positive regulator of salt stress and grain quality, which might bring new insights into the breeding of rice varieties
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	chalkiness	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	chalkiness	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 The expression levels of genes coding for starch (OsAGPL1, OsSSIIa, OsWx, and OsFLO2) and seed storage proteins (GluA1 and Globulin 1) were significantly decreased, indicating that they synthesize less store starch and proteins, resulting in grain chalkiness in the osbhlh044 (OsHKT1;3, OsHAK7, OsSOS1, OsSOS2, OsNHX2, and OsLEA3 but not OsHKT2;1), and starch-related genes (OsSSIIa, OsWx, and OsFLO2) by binding to the G-boxes of their promoters
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	reactive oxygen species	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 Lower antioxidant activities and higher lipid peroxidation and hydrogen peroxide (H(2)O(2)) accumulation in the osbhlh044 mutants caused salinity sensitivity due to elevated reactive oxygen species (ROS)
OsbHLH96|OsbHLH044	Os03g0188400	LOC_Os03g08930	globulin	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	 The expression levels of genes coding for starch (OsAGPL1, OsSSIIa, OsWx, and OsFLO2) and seed storage proteins (GluA1 and Globulin 1) were significantly decreased, indicating that they synthesize less store starch and proteins, resulting in grain chalkiness in the osbhlh044 (OsHKT1;3, OsHAK7, OsSOS1, OsSOS2, OsNHX2, and OsLEA3 but not OsHKT2;1), and starch-related genes (OsSSIIa, OsWx, and OsFLO2) by binding to the G-boxes of their promoters
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	osbhlh98 mutant leaves formed a larger leaf angle, whereas transgenic plants overexpressing OsbHLH98 exhibited a slight reduction in leaf angle
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	We determined that the changes in leaf angle resulted from increased number and size of parenchyma cells on the adaxial side of the lamina joint in osbhlh98 mutants
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	Experiments using reporter constructs showed that OsbHLH98 is expressed on the adaxial side of lamina joints, consistent with its proposed function in regulating leaf angle
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	Our results demonstrate that OsbHLH98 negatively regulates leaf angle by counteracting brassinosteroid-induced cell elongation via the repression of OsBUL1 transcription
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	The characterization of OsbHLH98 and its role in determining leaf angle will lay the foundation to develop the ideal plant architecture for adaptation to high planting density
OsbHLH98	Os03g0797600	LOC_Os03g58330	architecture	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	The characterization of OsbHLH98 and its role in determining leaf angle will lay the foundation to develop the ideal plant architecture for adaptation to high planting density
OsbHLH98	Os03g0797600	LOC_Os03g58330	cell elongation	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	Our results demonstrate that OsbHLH98 negatively regulates leaf angle by counteracting brassinosteroid-induced cell elongation via the repression of OsBUL1 transcription
OsbHLH98	Os03g0797600	LOC_Os03g58330	lamina	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	We determined that the changes in leaf angle resulted from increased number and size of parenchyma cells on the adaxial side of the lamina joint in osbhlh98 mutants
OsbHLH98	Os03g0797600	LOC_Os03g58330	lamina	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	Experiments using reporter constructs showed that OsbHLH98 is expressed on the adaxial side of lamina joints, consistent with its proposed function in regulating leaf angle
OsbHLH98	Os03g0797600	LOC_Os03g58330	plant architecture	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	The characterization of OsbHLH98 and its role in determining leaf angle will lay the foundation to develop the ideal plant architecture for adaptation to high planting density
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf angle	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf angle	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	osbhlh98 mutant leaves formed a larger leaf angle, whereas transgenic plants overexpressing OsbHLH98 exhibited a slight reduction in leaf angle
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf angle	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	We determined that the changes in leaf angle resulted from increased number and size of parenchyma cells on the adaxial side of the lamina joint in osbhlh98 mutants
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf angle	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	Experiments using reporter constructs showed that OsbHLH98 is expressed on the adaxial side of lamina joints, consistent with its proposed function in regulating leaf angle
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf angle	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	Our results demonstrate that OsbHLH98 negatively regulates leaf angle by counteracting brassinosteroid-induced cell elongation via the repression of OsBUL1 transcription
OsbHLH98	Os03g0797600	LOC_Os03g58330	leaf angle	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	The characterization of OsbHLH98 and its role in determining leaf angle will lay the foundation to develop the ideal plant architecture for adaptation to high planting density
OsbHLH98	Os03g0797600	LOC_Os03g58330	lamina joint	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	We determined that the changes in leaf angle resulted from increased number and size of parenchyma cells on the adaxial side of the lamina joint in osbhlh98 mutants
OsbHLH98	Os03g0797600	LOC_Os03g58330	lamina joint	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	Experiments using reporter constructs showed that OsbHLH98 is expressed on the adaxial side of lamina joints, consistent with its proposed function in regulating leaf angle
OsBHT	Os01g0757500	LOC_Os01g55270	development	Identification of a Novel Gene, Osbht, in Response to High Temperature Tolerance at Booting Stage in Rice	Although some existing high-temperature-tolerant genes have been reported, OsBHT can be used more effectively for the development of heat tolerance in rice
OsBHT	Os01g0757500	LOC_Os01g55270	tolerance	Identification of a Novel Gene, Osbht, in Response to High Temperature Tolerance at Booting Stage in Rice	Although some existing high-temperature-tolerant genes have been reported, OsBHT can be used more effectively for the development of heat tolerance in rice
OsBHT	Os01g0757500	LOC_Os01g55270	heat tolerance	Identification of a Novel Gene, Osbht, in Response to High Temperature Tolerance at Booting Stage in Rice	Although some existing high-temperature-tolerant genes have been reported, OsBHT can be used more effectively for the development of heat tolerance in rice
OsBI-1	Os02g0125300	LOC_Os02g03280	transcription factor	Profiling of rice Cd-tolerant genes through yeast-based cDNA library survival screening	Among the Cd-tolerant genes identified, several categories of genes such as BAX inhibitor (BI), NAC transcription factors and Rapid ALkalinization Factors (RALFs) were of particular interest, and their function of Cd tolerance was further validated via heterologous expression, which suggested that SNAC1, RALF12, OsBI-1 can confer Cd tolerance in yeast and tobacco leaves
OsBI-1	Os02g0125300	LOC_Os02g03280	tolerance	Profiling of rice Cd-tolerant genes through yeast-based cDNA library survival screening	Among the Cd-tolerant genes identified, several categories of genes such as BAX inhibitor (BI), NAC transcription factors and Rapid ALkalinization Factors (RALFs) were of particular interest, and their function of Cd tolerance was further validated via heterologous expression, which suggested that SNAC1, RALF12, OsBI-1 can confer Cd tolerance in yeast and tobacco leaves
OsBi1	None	None	brown planthopper	OsBi1, a rice gene, encodes a novel protein with a CBS-like domain and its expression is induced in responses to herbivore feeding	Increase in the level of OsBi1 expression was detected in rice plants shortly after brown planthopper feeding
OsBi1	None	None	brown planthopper	OsBi1, a rice gene, encodes a novel protein with a CBS-like domain and its expression is induced in responses to herbivore feeding	Evidences suggest that OsBi1 is a BPH-inducible gene that is implicated in the resistance of rice plants to brown planthopper
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	defense response	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice	Our results suggest that OsBIABP1 may be a defense-related AMP-binding protein that is involved in the regulation of defense response through SA and/or JA/ET signaling pathways
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stem	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice	OsBIABP1 is expressed in stems, leaves and flowers of rice plants, but is not expressed, or expressed at a very low level, in rice roots
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	magnaporthe oryzae	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice	Furthermore, the expression of OsBIABP1 is activated by the infection of Magnaporthe oryzae, and the induced expression is quicker and stronger during early stages of pathogenesis in incompatible interaction than that in compatible interaction between rice and M
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	root	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice	OsBIABP1 is expressed in stems, leaves and flowers of rice plants, but is not expressed, or expressed at a very low level, in rice roots
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	flower	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice	OsBIABP1 is expressed in stems, leaves and flowers of rice plants, but is not expressed, or expressed at a very low level, in rice roots
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	leaf	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	A second screen using an infrared thermography camera revealed that one of the mutants, named slac1, had a constitutive low leaf temperature phenotype
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	leaf	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	Measurement of leaf gas exchange showed that slac1 plants grown in the greenhouse had significantly higher stomatal conductance (g (s)), rates of photosynthesis (A), and ratios of internal [CO(2)] to ambient [CO(2)] (C (i)/C (a)) compared with wild-type plants, whereas there was no significant difference in the response of photosynthesis to internal [CO(2)] (A/C (i) curves)
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	leaf	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	defense	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice	The expression of OsBIABP1 was induced by some defense-related signal molecules, e
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	defense	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice	Our results suggest that OsBIABP1 may be a defense-related AMP-binding protein that is involved in the regulation of defense response through SA and/or JA/ET signaling pathways
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	defense	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	temperature	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	A second screen using an infrared thermography camera revealed that one of the mutants, named slac1, had a constitutive low leaf temperature phenotype
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomatal	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	SLAC1 is a stomatal anion channel protein controlling stomatal closure in response to environmental [CO(2)]
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomatal	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	In order to examine stomatal limitations to photosynthesis, a SLAC1-deficient mutant of rice was isolated and characterized
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomatal	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	Measurement of leaf gas exchange showed that slac1 plants grown in the greenhouse had significantly higher stomatal conductance (g (s)), rates of photosynthesis (A), and ratios of internal [CO(2)] to ambient [CO(2)] (C (i)/C (a)) compared with wild-type plants, whereas there was no significant difference in the response of photosynthesis to internal [CO(2)] (A/C (i) curves)
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomatal	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	photosynthesis	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	In order to examine stomatal limitations to photosynthesis, a SLAC1-deficient mutant of rice was isolated and characterized
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	photosynthesis	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	Measurement of leaf gas exchange showed that slac1 plants grown in the greenhouse had significantly higher stomatal conductance (g (s)), rates of photosynthesis (A), and ratios of internal [CO(2)] to ambient [CO(2)] (C (i)/C (a)) compared with wild-type plants, whereas there was no significant difference in the response of photosynthesis to internal [CO(2)] (A/C (i) curves)
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	photosynthesis	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomata	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	SLAC1 is a stomatal anion channel protein controlling stomatal closure in response to environmental [CO(2)]
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomata	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	In order to examine stomatal limitations to photosynthesis, a SLAC1-deficient mutant of rice was isolated and characterized
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomata	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	Measurement of leaf gas exchange showed that slac1 plants grown in the greenhouse had significantly higher stomatal conductance (g (s)), rates of photosynthesis (A), and ratios of internal [CO(2)] to ambient [CO(2)] (C (i)/C (a)) compared with wild-type plants, whereas there was no significant difference in the response of photosynthesis to internal [CO(2)] (A/C (i) curves)
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomata	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	sa	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice	Our results suggest that OsBIABP1 may be a defense-related AMP-binding protein that is involved in the regulation of defense response through SA and/or JA/ET signaling pathways
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	tillering	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	All three lines had maximum gs during the tillering stage, when the gs values were 50% higher in slac1 and 70% lower in SLAC1-F461A, compared with WT
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	tillering	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	Both slac1 and SLAC1-F461A retained the ability to change gs in response to the day-night cycle, and showed differences in tillering rate and plant height compared with WT, and lower grain yield
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	tillering	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	These observations show that SLAC1 plays a crucial role in regulating stomata in rice at the tillering stage
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	growth	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	To discern the contribution of stomatal regulation to rice growth, we compared gs among wild-type (WT) and two mutants, slac1 and the dominant-positive mutant SLAC1-F461A, which expresses a point mutation causing an amino acid substitution (F461A) in SLAC1, at different growth stages
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	grain	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	Both slac1 and SLAC1-F461A retained the ability to change gs in response to the day-night cycle, and showed differences in tillering rate and plant height compared with WT, and lower grain yield
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	grain yield	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	Both slac1 and SLAC1-F461A retained the ability to change gs in response to the day-night cycle, and showed differences in tillering rate and plant height compared with WT, and lower grain yield
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	yield	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	Both slac1 and SLAC1-F461A retained the ability to change gs in response to the day-night cycle, and showed differences in tillering rate and plant height compared with WT, and lower grain yield
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	height	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	Both slac1 and SLAC1-F461A retained the ability to change gs in response to the day-night cycle, and showed differences in tillering rate and plant height compared with WT, and lower grain yield
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	plant height	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	Both slac1 and SLAC1-F461A retained the ability to change gs in response to the day-night cycle, and showed differences in tillering rate and plant height compared with WT, and lower grain yield
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomatal	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomatal	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	SLAC1 is an S-type anion channel protein that controls stomatal closure in response to elevated CO2
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomatal	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	Rice slac1 mutants showed significantly increased stomatal conductance (gs) and enhanced CO2 assimilation
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomatal	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	To discern the contribution of stomatal regulation to rice growth, we compared gs among wild-type (WT) and two mutants, slac1 and the dominant-positive mutant SLAC1-F461A, which expresses a point mutation causing an amino acid substitution (F461A) in SLAC1, at different growth stages
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	stomata	Contribution of the S-type anion channel SLAC1 to stomatal control and its dependence on developmental stage in rice.	These observations show that SLAC1 plays a crucial role in regulating stomata in rice at the tillering stage
OsBIABP1|SLAC1|OsSLAC1	Os04g0674700	LOC_Os04g57850	water loss	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	In addition, SAPK10 phosphorylated OsSLAC1 in vitro and transgenic rice overexpressing SAPK10 or OsSLAC1 showed significantly less water loss than control
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	xoo	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	Moreover, the accumulation of XB25 is induced by Xoo infection
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	The downregulation of Xb25 results in reduced levels of XA21 and compromised XA21-mediated disease resistance at the adult stage
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	Taken together, these results indicate that XB25 is required for maintaining XA21-mediated disease resistance
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	defense	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease resistance	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses	Expression of OsBIANK1 was induced by treatment with benzothiadiazole (BTH), a chemical inducer capable of inducing disease resistance response in rice
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease resistance	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses	Our preliminary results confirm previous evidences that OsBIANK1 may be involved in regulation of disease resistance response in rice
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses	Expression of OsBIANK1 was induced by treatment with benzothiadiazole (BTH), a chemical inducer capable of inducing disease resistance response in rice
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses	Our preliminary results confirm previous evidences that OsBIANK1 may be involved in regulation of disease resistance response in rice
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	seedling	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses	In BTH-treated rice seedlings, expression of OsBIANK1 was further induced by infection with Magnaporthe grisea, the rice blast fungus, as compared with those in water-treated seedlings
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	blast	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses	In BTH-treated rice seedlings, expression of OsBIANK1 was further induced by infection with Magnaporthe grisea, the rice blast fungus, as compared with those in water-treated seedlings
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	The downregulation of Xb25 results in reduced levels of XA21 and compromised XA21-mediated disease resistance at the adult stage
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	Taken together, these results indicate that XB25 is required for maintaining XA21-mediated disease resistance
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	disease	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance
OsBIANK1|XB25	Os09g0513000	LOC_Os09g33810	defense response	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored ankyrin repeat protein, and its inducible expression in defense responses
OsBIC1	Os04g0412100	LOC_Os04g33610	leaf	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.
OsBIC1	Os04g0412100	LOC_Os04g33610	leaf	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 The overexpression of OsBIC1 and OsBIC2 led to increased leaf sheath length, whereas mutations in OsBIC1 displayed shorter leaf sheath in a blue light intensity-dependent manner
OsBIC1	Os04g0412100	LOC_Os04g33610	leaf	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 OsBIC1 regulated blue light-induced leaf sheath elongation through direct interaction with OsCRY1a, OsCRY1b, and OsCRY2 (OsCRYs)
OsBIC1	Os04g0412100	LOC_Os04g33610	leaf	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 Longitudinal sections of the second leaf sheath demonstrated that OsBIC1 and OsCRYs controlled leaf sheath length by influencing the ratio of epidermal cells with different lengths
OsBIC1	Os04g0412100	LOC_Os04g33610	leaf	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 Taken together, these results suggested that OsBIC1 and OsCRYs worked together to regulate epidermal cell elongation and control blue light-induced leaf sheath elongation through the GA-responsive pathway
OsBIC1	Os04g0412100	LOC_Os04g33610	sheath	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.
OsBIC1	Os04g0412100	LOC_Os04g33610	sheath	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 The overexpression of OsBIC1 and OsBIC2 led to increased leaf sheath length, whereas mutations in OsBIC1 displayed shorter leaf sheath in a blue light intensity-dependent manner
OsBIC1	Os04g0412100	LOC_Os04g33610	sheath	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 OsBIC1 regulated blue light-induced leaf sheath elongation through direct interaction with OsCRY1a, OsCRY1b, and OsCRY2 (OsCRYs)
OsBIC1	Os04g0412100	LOC_Os04g33610	sheath	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 Longitudinal sections of the second leaf sheath demonstrated that OsBIC1 and OsCRYs controlled leaf sheath length by influencing the ratio of epidermal cells with different lengths
OsBIC1	Os04g0412100	LOC_Os04g33610	sheath	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 Taken together, these results suggested that OsBIC1 and OsCRYs worked together to regulate epidermal cell elongation and control blue light-induced leaf sheath elongation through the GA-responsive pathway
OsBIC1	Os04g0412100	LOC_Os04g33610	cell elongation	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 Taken together, these results suggested that OsBIC1 and OsCRYs worked together to regulate epidermal cell elongation and control blue light-induced leaf sheath elongation through the GA-responsive pathway
OsBIC2	Os02g0532800	LOC_Os02g32990	leaf	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 The overexpression of OsBIC1 and OsBIC2 led to increased leaf sheath length, whereas mutations in OsBIC1 displayed shorter leaf sheath in a blue light intensity-dependent manner
OsBIC2	Os02g0532800	LOC_Os02g32990	sheath	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 The overexpression of OsBIC1 and OsBIC2 led to increased leaf sheath length, whereas mutations in OsBIC1 displayed shorter leaf sheath in a blue light intensity-dependent manner
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	blast	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Expression of OsBIDK1 in rice seedlings was induced by treatment with benzothiadiazole (BTH), a chemical activator of the plant defense response, and by infection with Magnaporthe grisea, causal agent of blast disease
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	defense	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Expression of OsBIDK1 in rice seedlings was induced by treatment with benzothiadiazole (BTH), a chemical activator of the plant defense response, and by infection with Magnaporthe grisea, causal agent of blast disease
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	disease	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Expression of OsBIDK1 in rice seedlings was induced by treatment with benzothiadiazole (BTH), a chemical activator of the plant defense response, and by infection with Magnaporthe grisea, causal agent of blast disease
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	disease	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Transgenic tobacco plants that constitutively express the OsBIDK1 gene were generated and disease resistance assays showed that overexpression of OsBIDK1 in transgenic tobacco plants resulted in enhanced resistance against infection by tobacco mosaic virus and Phytophthora parasitica var
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	disease	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	These results suggest that OsBIDK1 may play a role in disease resistance responses
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	disease	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	defense response	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Expression of OsBIDK1 in rice seedlings was induced by treatment with benzothiadiazole (BTH), a chemical activator of the plant defense response, and by infection with Magnaporthe grisea, causal agent of blast disease
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	seedling	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Expression of OsBIDK1 in rice seedlings was induced by treatment with benzothiadiazole (BTH), a chemical activator of the plant defense response, and by infection with Magnaporthe grisea, causal agent of blast disease
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	seedling	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	In BTH-treated rice seedlings, expression of OsBIDK1 was induced earlier and at a higher level than in water-treated control seedlings after inoculation with M
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	blast disease	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Expression of OsBIDK1 in rice seedlings was induced by treatment with benzothiadiazole (BTH), a chemical activator of the plant defense response, and by infection with Magnaporthe grisea, causal agent of blast disease
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	disease resistance	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Transgenic tobacco plants that constitutively express the OsBIDK1 gene were generated and disease resistance assays showed that overexpression of OsBIDK1 in transgenic tobacco plants resulted in enhanced resistance against infection by tobacco mosaic virus and Phytophthora parasitica var
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	disease resistance	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	These results suggest that OsBIDK1 may play a role in disease resistance responses
OsBIDK1|OsDGK1	Os04g0634700	LOC_Os04g54200	disease resistance	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	salicylic acid	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Expression of OsBIERF1, OsBIERF3 and OsBIERF4 was induced by treatments with BTH and salicylic acid, chemical inducers capable of inducing disease resistance response in rice
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	ethylene	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	We isolated and identified four rice genes, OsBIERF1 to OsBIERF4 (Oryza sativa benzothiadiazole (BTH)-induced ethylene responsive transcriptional factors (ERF)) and analyzed their expressions in rice disease resistance response and under various abiotic stress conditions
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	blast	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	In the BTH-treated rice seedlings, expression of OsBIERF1, OsBIERF3 and OsBIERF4 was further induced by infection with Magnaporthe grisea, the rice blast fungus, as compared with those in water-treated seedlings
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	disease	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	We isolated and identified four rice genes, OsBIERF1 to OsBIERF4 (Oryza sativa benzothiadiazole (BTH)-induced ethylene responsive transcriptional factors (ERF)) and analyzed their expressions in rice disease resistance response and under various abiotic stress conditions
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	disease	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Expression of OsBIERF1, OsBIERF3 and OsBIERF4 was induced by treatments with BTH and salicylic acid, chemical inducers capable of inducing disease resistance response in rice
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	disease resistance	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	We isolated and identified four rice genes, OsBIERF1 to OsBIERF4 (Oryza sativa benzothiadiazole (BTH)-induced ethylene responsive transcriptional factors (ERF)) and analyzed their expressions in rice disease resistance response and under various abiotic stress conditions
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	disease resistance	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Expression of OsBIERF1, OsBIERF3 and OsBIERF4 was induced by treatments with BTH and salicylic acid, chemical inducers capable of inducing disease resistance response in rice
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	abiotic stress	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	We isolated and identified four rice genes, OsBIERF1 to OsBIERF4 (Oryza sativa benzothiadiazole (BTH)-induced ethylene responsive transcriptional factors (ERF)) and analyzed their expressions in rice disease resistance response and under various abiotic stress conditions
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	salt	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Moreover, OsBIERF1, OsBIERF3 and OsBIERF4 were also up-regulated by salt, cold, drought and wounding
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	drought	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Moreover, OsBIERF1, OsBIERF3 and OsBIERF4 were also up-regulated by salt, cold, drought and wounding
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	seedling	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	In the BTH-treated rice seedlings, expression of OsBIERF1, OsBIERF3 and OsBIERF4 was further induced by infection with Magnaporthe grisea, the rice blast fungus, as compared with those in water-treated seedlings
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	ga	Isolation of a novel protein phosphatase2C in rice and its response to gibberellin.	Overall, the present results indicated that OsPP2C34 is involved in-amylase expression of GA signal transduction pathway
OsBIERF1|OsPP2C34	Os03g0761100	LOC_Os03g55320	GA	Isolation of a novel protein phosphatase2C in rice and its response to gibberellin.	Overall, the present results indicated that OsPP2C34 is involved in-amylase expression of GA signal transduction pathway
OsBIERF4	Os03g0183300	LOC_Os03g08500	salicylic acid	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Expression of OsBIERF1, OsBIERF3 and OsBIERF4 was induced by treatments with BTH and salicylic acid, chemical inducers capable of inducing disease resistance response in rice
OsBIERF4	Os03g0183300	LOC_Os03g08500	disease	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	We isolated and identified four rice genes, OsBIERF1 to OsBIERF4 (Oryza sativa benzothiadiazole (BTH)-induced ethylene responsive transcriptional factors (ERF)) and analyzed their expressions in rice disease resistance response and under various abiotic stress conditions
OsBIERF4	Os03g0183300	LOC_Os03g08500	disease	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Expression of OsBIERF1, OsBIERF3 and OsBIERF4 was induced by treatments with BTH and salicylic acid, chemical inducers capable of inducing disease resistance response in rice
OsBIERF4	Os03g0183300	LOC_Os03g08500	disease resistance	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	We isolated and identified four rice genes, OsBIERF1 to OsBIERF4 (Oryza sativa benzothiadiazole (BTH)-induced ethylene responsive transcriptional factors (ERF)) and analyzed their expressions in rice disease resistance response and under various abiotic stress conditions
OsBIERF4	Os03g0183300	LOC_Os03g08500	disease resistance	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Expression of OsBIERF1, OsBIERF3 and OsBIERF4 was induced by treatments with BTH and salicylic acid, chemical inducers capable of inducing disease resistance response in rice
OsBIERF4	Os03g0183300	LOC_Os03g08500	abiotic stress	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	We isolated and identified four rice genes, OsBIERF1 to OsBIERF4 (Oryza sativa benzothiadiazole (BTH)-induced ethylene responsive transcriptional factors (ERF)) and analyzed their expressions in rice disease resistance response and under various abiotic stress conditions
OsBIERF4	Os03g0183300	LOC_Os03g08500	seedling	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	In the BTH-treated rice seedlings, expression of OsBIERF1, OsBIERF3 and OsBIERF4 was further induced by infection with Magnaporthe grisea, the rice blast fungus, as compared with those in water-treated seedlings
OsBIERF4	Os03g0183300	LOC_Os03g08500	ethylene	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	We isolated and identified four rice genes, OsBIERF1 to OsBIERF4 (Oryza sativa benzothiadiazole (BTH)-induced ethylene responsive transcriptional factors (ERF)) and analyzed their expressions in rice disease resistance response and under various abiotic stress conditions
OsBIERF4	Os03g0183300	LOC_Os03g08500	blast	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	In the BTH-treated rice seedlings, expression of OsBIERF1, OsBIERF3 and OsBIERF4 was further induced by infection with Magnaporthe grisea, the rice blast fungus, as compared with those in water-treated seedlings
OsBIERF4	Os03g0183300	LOC_Os03g08500	salt	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Moreover, OsBIERF1, OsBIERF3 and OsBIERF4 were also up-regulated by salt, cold, drought and wounding
OsBIERF4	Os03g0183300	LOC_Os03g08500	drought	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress	Moreover, OsBIERF1, OsBIERF3 and OsBIERF4 were also up-regulated by salt, cold, drought and wounding
OsBIG	Os09g0247700	LOC_Os09g07294	growth	Rice BIG gene is required for seedling viability.	In summary, OsBIG gene is integral to the normal growth and development in rice
OsBIG	Os09g0247700	LOC_Os09g07294	development	Rice BIG gene is required for seedling viability.	In summary, OsBIG gene is integral to the normal growth and development in rice
OsBIHD1	Os03g0680800	LOC_Os03g47740	disease resistance	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	To allow a better understanding of the function of OsBIHD1 in plant disease resistance response, the OsBIHD1 gene in tobacco was overexpressed by Agrobacterium-mediated leaf disc transformation with a construct containing the OsBIHD1 ORF under control of the 35S promoter
OsBIHD1	Os03g0680800	LOC_Os03g47740	disease resistance	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	The results suggested that the OsBIHD1 protein may be positively involved in activating expression of the defence-related genes in disease resistance responses, and is also important in rice development and abiotic stress tolerance
OsBIHD1	Os03g0680800	LOC_Os03g47740	disease	Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses	Northern blot analysis showed that expression of OsBIHD1 was activated upon treatment with benzothiadiazole (BTH), which is capable of inducing disease resistance
OsBIHD1	Os03g0680800	LOC_Os03g47740	disease	Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses	Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses
OsBIHD1	Os03g0680800	LOC_Os03g47740	transcription factor	Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses	These results suggest that OsBIHD1 is a BELL type of homeodomain transcription factor present in the nucleus, whose induction is associated with resistance response in rice
OsBIHD1	Os03g0680800	LOC_Os03g47740	seedling	Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses	Expression of OsBIHD1 was also up-regulated rapidly during the first 6 h after inoculation with Magnaporthe grisea in BTH-treated rice seedlings and during the incompatible interaction between M
OsBIHD1	Os03g0680800	LOC_Os03g47740	disease	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	To allow a better understanding of the function of OsBIHD1 in plant disease resistance response, the OsBIHD1 gene in tobacco was overexpressed by Agrobacterium-mediated leaf disc transformation with a construct containing the OsBIHD1 ORF under control of the 35S promoter
OsBIHD1	Os03g0680800	LOC_Os03g47740	disease	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	The results suggested that the OsBIHD1 protein may be positively involved in activating expression of the defence-related genes in disease resistance responses, and is also important in rice development and abiotic stress tolerance
OsBIHD1	Os03g0680800	LOC_Os03g47740	root	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	Overexpression of the rice OsBIHD1 gene in some of the transgenic tobacco lines led to some morphological abnormalities in the top buds and roots
OsBIHD1	Os03g0680800	LOC_Os03g47740	salt	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	However, the transgenic tobacco plants overexpressing OsBIHD1 showed enhanced sensitivity to salt and oxidative stress as compared with the wild-type plants
OsBIHD1	Os03g0680800	LOC_Os03g47740	biotic stress	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	The results suggested that the OsBIHD1 protein may be positively involved in activating expression of the defence-related genes in disease resistance responses, and is also important in rice development and abiotic stress tolerance
OsBIHD1	Os03g0680800	LOC_Os03g47740	biotic stress	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses
OsBIHD1	Os03g0680800	LOC_Os03g47740	leaf	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	To allow a better understanding of the function of OsBIHD1 in plant disease resistance response, the OsBIHD1 gene in tobacco was overexpressed by Agrobacterium-mediated leaf disc transformation with a construct containing the OsBIHD1 ORF under control of the 35S promoter
OsBIHD1	Os03g0680800	LOC_Os03g47740	disease resistance	Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses	Northern blot analysis showed that expression of OsBIHD1 was activated upon treatment with benzothiadiazole (BTH), which is capable of inducing disease resistance
OsBIHD1	Os03g0680800	LOC_Os03g47740	disease resistance	Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses	Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses
OsBIHD1	Os03g0680800	LOC_Os03g47740	abiotic stress	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	The results suggested that the OsBIHD1 protein may be positively involved in activating expression of the defence-related genes in disease resistance responses, and is also important in rice development and abiotic stress tolerance
OsBIHD1	Os03g0680800	LOC_Os03g47740	abiotic stress	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses
OsBIHD1	Os03g0680800	LOC_Os03g47740	oxidative	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses	However, the transgenic tobacco plants overexpressing OsBIHD1 showed enhanced sensitivity to salt and oxidative stress as compared with the wild-type plants
OsBIHD1	Os03g0680800	LOC_Os03g47740	transcription factor	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	In a large-scale yeast two-hybrid screening for Pik-H4-interacting proteins, a homeodomain transcription factor OsBIHD1 was identified, which is previously known to function in biotic and abiotic stress responses
OsBIHD1	Os03g0680800	LOC_Os03g47740	growth	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.
OsBIHD1	Os03g0680800	LOC_Os03g47740	growth	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	Furthermore, OsBIHD1 was found to be capable of binding to the sequence-specific cis-elements on the promoters of CYP734A2 to suppress the plant growth under fungal invasion
OsBIHD1	Os03g0680800	LOC_Os03g47740	growth	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	Our results collectively suggest a model that OsBIHD1 is required for Pik-H4-mediated blast resistance through modulating the trade-off between resistance and growth by coordinating brassinosteroid-ethylene pathway
OsBIHD1	Os03g0680800	LOC_Os03g47740	resistance	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.
OsBIHD1	Os03g0680800	LOC_Os03g47740	resistance	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	The knockout of OsBIHD1 in rice lines carrying Pik-H4 largely compromised the resistance of the rice lines to Magnaporthe oryzae, the fungus that causes rice blast
OsBIHD1	Os03g0680800	LOC_Os03g47740	resistance	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	Our results collectively suggest a model that OsBIHD1 is required for Pik-H4-mediated blast resistance through modulating the trade-off between resistance and growth by coordinating brassinosteroid-ethylene pathway
OsBIHD1	Os03g0680800	LOC_Os03g47740	abiotic stress	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	In a large-scale yeast two-hybrid screening for Pik-H4-interacting proteins, a homeodomain transcription factor OsBIHD1 was identified, which is previously known to function in biotic and abiotic stress responses
OsBIHD1	Os03g0680800	LOC_Os03g47740	ethylene	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	While overexpression of OsBIHD1 resulted in enhanced expression of the pathogenesis-related (PR) and ethylene (ET) synthesis genes
OsBIHD1	Os03g0680800	LOC_Os03g47740	blast	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.
OsBIHD1	Os03g0680800	LOC_Os03g47740	blast	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	The knockout of OsBIHD1 in rice lines carrying Pik-H4 largely compromised the resistance of the rice lines to Magnaporthe oryzae, the fungus that causes rice blast
OsBIHD1	Os03g0680800	LOC_Os03g47740	blast	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	Our results collectively suggest a model that OsBIHD1 is required for Pik-H4-mediated blast resistance through modulating the trade-off between resistance and growth by coordinating brassinosteroid-ethylene pathway
OsBIHD1	Os03g0680800	LOC_Os03g47740	stress	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	In a large-scale yeast two-hybrid screening for Pik-H4-interacting proteins, a homeodomain transcription factor OsBIHD1 was identified, which is previously known to function in biotic and abiotic stress responses
OsBIHD1	Os03g0680800	LOC_Os03g47740	magnaporthe oryzae	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	The knockout of OsBIHD1 in rice lines carrying Pik-H4 largely compromised the resistance of the rice lines to Magnaporthe oryzae, the fungus that causes rice blast
OsBIHD1	Os03g0680800	LOC_Os03g47740	R protein	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.
OsBIHD1	Os03g0680800	LOC_Os03g47740	brassinosteroid	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	In addition, OsBIHD1 overexpression or deficiency provoked dwarfism and reduced brassinosteroid (BR) insensitivity through repressing the expression of several critical genes involved in BR biosynthesis and BR signaling
OsBIHD1	Os03g0680800	LOC_Os03g47740	BR	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	In addition, OsBIHD1 overexpression or deficiency provoked dwarfism and reduced brassinosteroid (BR) insensitivity through repressing the expression of several critical genes involved in BR biosynthesis and BR signaling
OsBIHD1	Os03g0680800	LOC_Os03g47740	Brassinosteroid	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	In addition, OsBIHD1 overexpression or deficiency provoked dwarfism and reduced brassinosteroid (BR) insensitivity through repressing the expression of several critical genes involved in BR biosynthesis and BR signaling
OsBIHD1	Os03g0680800	LOC_Os03g47740	BR signaling	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	In addition, OsBIHD1 overexpression or deficiency provoked dwarfism and reduced brassinosteroid (BR) insensitivity through repressing the expression of several critical genes involved in BR biosynthesis and BR signaling
OsBIHD1	Os03g0680800	LOC_Os03g47740	biotic stress	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	In a large-scale yeast two-hybrid screening for Pik-H4-interacting proteins, a homeodomain transcription factor OsBIHD1 was identified, which is previously known to function in biotic and abiotic stress responses
OsBIHD1	Os03g0680800	LOC_Os03g47740	blast resistance	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.
OsBIHD1	Os03g0680800	LOC_Os03g47740	blast resistance	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	Our results collectively suggest a model that OsBIHD1 is required for Pik-H4-mediated blast resistance through modulating the trade-off between resistance and growth by coordinating brassinosteroid-ethylene pathway
OsBIHD1	Os03g0680800	LOC_Os03g47740	stress response	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	In a large-scale yeast two-hybrid screening for Pik-H4-interacting proteins, a homeodomain transcription factor OsBIHD1 was identified, which is previously known to function in biotic and abiotic stress responses
OsBIHD1	Os03g0680800	LOC_Os03g47740	plant growth	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	Furthermore, OsBIHD1 was found to be capable of binding to the sequence-specific cis-elements on the promoters of CYP734A2 to suppress the plant growth under fungal invasion
OsBIM1	Os09g0475400	LOC_Os09g29930	leaf	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	Overexpression of OsBIM1 significantly increases rice leaf angles, whereas the T-DNA knock-out mutant osbim1 and wide type (WT) showed similar leaf inclination
OsBIM1	Os09g0475400	LOC_Os09g29930	leaf	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	Gene expression analysis showed that the overexpression of OsBIM1 significantly increased the transcripts of INCREASED LEAF INCLINATION1 (OsILI1) that functions as a key transcription factor promoting BR signaling and response
OsBIM1	Os09g0475400	LOC_Os09g29930	leaf	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	The promoting effect of OsBIM1 overexpression on leaf angle can still be observed at harvest stage, but overexpression of OsBIM1 resulted in smaller grain size and reduced yield
OsBIM1	Os09g0475400	LOC_Os09g29930	transcription factor	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	Gene expression analysis showed that the overexpression of OsBIM1 significantly increased the transcripts of INCREASED LEAF INCLINATION1 (OsILI1) that functions as a key transcription factor promoting BR signaling and response
OsBIM1	Os09g0475400	LOC_Os09g29930	grain	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	The promoting effect of OsBIM1 overexpression on leaf angle can still be observed at harvest stage, but overexpression of OsBIM1 resulted in smaller grain size and reduced yield
OsBIM1	Os09g0475400	LOC_Os09g29930	yield	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	The promoting effect of OsBIM1 overexpression on leaf angle can still be observed at harvest stage, but overexpression of OsBIM1 resulted in smaller grain size and reduced yield
OsBIM1	Os09g0475400	LOC_Os09g29930	grain size	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	The promoting effect of OsBIM1 overexpression on leaf angle can still be observed at harvest stage, but overexpression of OsBIM1 resulted in smaller grain size and reduced yield
OsBIM1	Os09g0475400	LOC_Os09g29930	BR	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	OsBIM1 overexpression enhances the sensitivity and response to BR treatment in rice
OsBIM1	Os09g0475400	LOC_Os09g29930	BR	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	Gene expression analysis showed that the overexpression of OsBIM1 significantly increased the transcripts of INCREASED LEAF INCLINATION1 (OsILI1) that functions as a key transcription factor promoting BR signaling and response
OsBIM1	Os09g0475400	LOC_Os09g29930	BR	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	Meanwhile, OsBIM1 inhibited the expression of DWARF2 (OsD2, a key enzyme in BR biosynthesis pathway)
OsBIM1	Os09g0475400	LOC_Os09g29930	BR	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	OsBIM1 can bind with OsILI1 promoter and enhance OsILI1 expression in response to BR treatment
OsBIM1	Os09g0475400	LOC_Os09g29930	BR	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	These results indicate that OsBIM1 functions as a positive regulator in BR signaling, and its overexpression increases rice lamina inclination by promoting BR sensitivity and response
OsBIM1	Os09g0475400	LOC_Os09g29930	BR signaling	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	Gene expression analysis showed that the overexpression of OsBIM1 significantly increased the transcripts of INCREASED LEAF INCLINATION1 (OsILI1) that functions as a key transcription factor promoting BR signaling and response
OsBIM1	Os09g0475400	LOC_Os09g29930	BR signaling	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	These results indicate that OsBIM1 functions as a positive regulator in BR signaling, and its overexpression increases rice lamina inclination by promoting BR sensitivity and response
OsBIM1	Os09g0475400	LOC_Os09g29930	lamina	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	These results indicate that OsBIM1 functions as a positive regulator in BR signaling, and its overexpression increases rice lamina inclination by promoting BR sensitivity and response
OsBIM1	Os09g0475400	LOC_Os09g29930	leaf angle	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	Overexpression of OsBIM1 significantly increases rice leaf angles, whereas the T-DNA knock-out mutant osbim1 and wide type (WT) showed similar leaf inclination
OsBIM1	Os09g0475400	LOC_Os09g29930	leaf angle	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	The promoting effect of OsBIM1 overexpression on leaf angle can still be observed at harvest stage, but overexpression of OsBIM1 resulted in smaller grain size and reduced yield
OsBip1	Os02g0115900	LOC_Os02g02410	seed	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice	When the subcellular localization of OsBiP4&5 was investigated in seed endosperm cells under the ER stress condition, OsBiP4&5 were localized to the ER, but did not participate in ER-derived protein body (PB-I) formation in a different manner to OsBiP1
OsBip1	Os02g0115900	LOC_Os02g02410	endosperm	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice	When the subcellular localization of OsBiP4&5 was investigated in seed endosperm cells under the ER stress condition, OsBiP4&5 were localized to the ER, but did not participate in ER-derived protein body (PB-I) formation in a different manner to OsBiP1
OsBiP4	Os05g0428600	LOC_Os05g35400	seed	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice	When the subcellular localization of OsBiP4&5 was investigated in seed endosperm cells under the ER stress condition, OsBiP4&5 were localized to the ER, but did not participate in ER-derived protein body (PB-I) formation in a different manner to OsBiP1
OsBiP4	Os05g0428600	LOC_Os05g35400	endosperm	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice	When the subcellular localization of OsBiP4&5 was investigated in seed endosperm cells under the ER stress condition, OsBiP4&5 were localized to the ER, but did not participate in ER-derived protein body (PB-I) formation in a different manner to OsBiP1
OsBiP5	Os08g0197700	LOC_Os08g09770	endoplasmic reticulum stress response	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice.	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice.
OsBiP5	Os08g0197700	LOC_Os08g09770	stress response	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice.	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice.
OsBIRF1	Os02g0743100	LOC_Os02g50930	seed germination	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Reduced ABA sensitivity in root elongation and increased drought tolerance in seed germination were also observed in OsBIRF1 transgenic tobacco plants
OsBIRF1	Os02g0743100	LOC_Os02g50930	disease	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Expression of OsBIRF1 was up-regulated in rice seedlings after treatment with benzothaidiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid and jasmonic acid, and was induced differentially in incompatible but not compatible interactions between rice and Magnaporthe grisea, the causal agent of blast disease
OsBIRF1	Os02g0743100	LOC_Os02g50930	disease	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Transgenic tobacco plants that constitutively express OsBIRF1 exhibit enhanced disease resistance against tobacco mosaic virus and Pseudomonas syringae pv
OsBIRF1	Os02g0743100	LOC_Os02g50930	salicylic acid	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Expression of OsBIRF1 was up-regulated in rice seedlings after treatment with benzothaidiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid and jasmonic acid, and was induced differentially in incompatible but not compatible interactions between rice and Magnaporthe grisea, the causal agent of blast disease
OsBIRF1	Os02g0743100	LOC_Os02g50930	jasmonic acid	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Expression of OsBIRF1 was up-regulated in rice seedlings after treatment with benzothaidiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid and jasmonic acid, and was induced differentially in incompatible but not compatible interactions between rice and Magnaporthe grisea, the causal agent of blast disease
OsBIRF1	Os02g0743100	LOC_Os02g50930	blast disease	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Expression of OsBIRF1 was up-regulated in rice seedlings after treatment with benzothaidiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid and jasmonic acid, and was induced differentially in incompatible but not compatible interactions between rice and Magnaporthe grisea, the causal agent of blast disease
OsBIRF1	Os02g0743100	LOC_Os02g50930	jasmonic	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Expression of OsBIRF1 was up-regulated in rice seedlings after treatment with benzothaidiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid and jasmonic acid, and was induced differentially in incompatible but not compatible interactions between rice and Magnaporthe grisea, the causal agent of blast disease
OsBIRF1	Os02g0743100	LOC_Os02g50930	blast	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Expression of OsBIRF1 was up-regulated in rice seedlings after treatment with benzothaidiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid and jasmonic acid, and was induced differentially in incompatible but not compatible interactions between rice and Magnaporthe grisea, the causal agent of blast disease
OsBIRF1	Os02g0743100	LOC_Os02g50930	disease resistance	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Transgenic tobacco plants that constitutively express OsBIRF1 exhibit enhanced disease resistance against tobacco mosaic virus and Pseudomonas syringae pv
OsBIRF1	Os02g0743100	LOC_Os02g50930	ABA	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Reduced ABA sensitivity in root elongation and increased drought tolerance in seed germination were also observed in OsBIRF1 transgenic tobacco plants
OsBIRF1	Os02g0743100	LOC_Os02g50930	drought	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Reduced ABA sensitivity in root elongation and increased drought tolerance in seed germination were also observed in OsBIRF1 transgenic tobacco plants
OsBIRF1	Os02g0743100	LOC_Os02g50930	defense response	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	These results demonstrate that OsBIRF1 has pleiotropic effects on growth and defense response against multiple abiotic and biotic stresses
OsBIRF1	Os02g0743100	LOC_Os02g50930	defense response	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses
OsBIRF1	Os02g0743100	LOC_Os02g50930	oxidative	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	The OsBIRF1-overexpressing transgenic tobacco plants show increased oxidative stress tolerance to exogenous treatment with methyl viologen and H2O2, and up-regulate expression of oxidative stress-related genes
OsBIRF1	Os02g0743100	LOC_Os02g50930	growth	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Furthermore, the transgenic tobacco plants show longer roots and higher plant heights as compared with the wild-type plants, suggesting that overexpression of OsBIRF1 promote plant growth
OsBIRF1	Os02g0743100	LOC_Os02g50930	growth	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	These results demonstrate that OsBIRF1 has pleiotropic effects on growth and defense response against multiple abiotic and biotic stresses
OsBIRF1	Os02g0743100	LOC_Os02g50930	growth	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses
OsBIRF1	Os02g0743100	LOC_Os02g50930	seedling	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Expression of OsBIRF1 was up-regulated in rice seedlings after treatment with benzothaidiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid and jasmonic acid, and was induced differentially in incompatible but not compatible interactions between rice and Magnaporthe grisea, the causal agent of blast disease
OsBIRF1	Os02g0743100	LOC_Os02g50930	seed	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Expression of OsBIRF1 was up-regulated in rice seedlings after treatment with benzothaidiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid and jasmonic acid, and was induced differentially in incompatible but not compatible interactions between rice and Magnaporthe grisea, the causal agent of blast disease
OsBIRF1	Os02g0743100	LOC_Os02g50930	seed	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Reduced ABA sensitivity in root elongation and increased drought tolerance in seed germination were also observed in OsBIRF1 transgenic tobacco plants
OsBIRF1	Os02g0743100	LOC_Os02g50930	height	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Furthermore, the transgenic tobacco plants show longer roots and higher plant heights as compared with the wild-type plants, suggesting that overexpression of OsBIRF1 promote plant growth
OsBIRF1	Os02g0743100	LOC_Os02g50930	biotic stress	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	These results demonstrate that OsBIRF1 has pleiotropic effects on growth and defense response against multiple abiotic and biotic stresses
OsBIRF1	Os02g0743100	LOC_Os02g50930	biotic stress	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses
OsBIRF1	Os02g0743100	LOC_Os02g50930	defense	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	These results demonstrate that OsBIRF1 has pleiotropic effects on growth and defense response against multiple abiotic and biotic stresses
OsBIRF1	Os02g0743100	LOC_Os02g50930	defense	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses
OsBIRF1	Os02g0743100	LOC_Os02g50930	drought tolerance	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Reduced ABA sensitivity in root elongation and increased drought tolerance in seed germination were also observed in OsBIRF1 transgenic tobacco plants
OsBIRF1	Os02g0743100	LOC_Os02g50930	root	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Reduced ABA sensitivity in root elongation and increased drought tolerance in seed germination were also observed in OsBIRF1 transgenic tobacco plants
OsBIRF1	Os02g0743100	LOC_Os02g50930	root	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses	Furthermore, the transgenic tobacco plants show longer roots and higher plant heights as compared with the wild-type plants, suggesting that overexpression of OsBIRF1 promote plant growth
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	disease	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	Disease resistance phenotype assays revealed that the OsBIRH1-overexpressing transgenic plants showed an enhanced disease resistance against Alternaria brassicicola and Pseudomonas syringae pv
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	jasmonic	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	Expression of OsBIRH1 was activated in rice seedling leaves after treatment with defence-related signal chemicals, for example benzothiadiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid, and jasmonic acid, and was also up-regulated in an incompatible interaction between a resistant rice genotype and the blast fungus, Magnaporthe grisea
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	abiotic stress	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	The results suggest that OsBIRH1 encodes a functional DEAD-box RNA helicase and plays important roles in defence responses against biotic and abiotic stresses
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	salicylic acid	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	Expression of OsBIRH1 was activated in rice seedling leaves after treatment with defence-related signal chemicals, for example benzothiadiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid, and jasmonic acid, and was also up-regulated in an incompatible interaction between a resistant rice genotype and the blast fungus, Magnaporthe grisea
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	seedling	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	Expression of OsBIRH1 was activated in rice seedling leaves after treatment with defence-related signal chemicals, for example benzothiadiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid, and jasmonic acid, and was also up-regulated in an incompatible interaction between a resistant rice genotype and the blast fungus, Magnaporthe grisea
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	jasmonic acid	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	Expression of OsBIRH1 was activated in rice seedling leaves after treatment with defence-related signal chemicals, for example benzothiadiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid, and jasmonic acid, and was also up-regulated in an incompatible interaction between a resistant rice genotype and the blast fungus, Magnaporthe grisea
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	disease resistance	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	Disease resistance phenotype assays revealed that the OsBIRH1-overexpressing transgenic plants showed an enhanced disease resistance against Alternaria brassicicola and Pseudomonas syringae pv
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	blast	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	Expression of OsBIRH1 was activated in rice seedling leaves after treatment with defence-related signal chemicals, for example benzothiadiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid, and jasmonic acid, and was also up-regulated in an incompatible interaction between a resistant rice genotype and the blast fungus, Magnaporthe grisea
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	oxidative	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	Moreover, the OsBIRH1 transgenic Arabidopsis plants also showed increased tolerance to oxidative stress and elevated expression levels of oxidative defence genes, AtApx1, AtApx2, and AtFSD1
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	oxidative	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	biotic stress	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	The results suggest that OsBIRH1 encodes a functional DEAD-box RNA helicase and plays important roles in defence responses against biotic and abiotic stresses
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	resistant	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress	Expression of OsBIRH1 was activated in rice seedling leaves after treatment with defence-related signal chemicals, for example benzothiadiazole, salicylic acid, l-aminocyclopropane-1-carboxylic acid, and jasmonic acid, and was also up-regulated in an incompatible interaction between a resistant rice genotype and the blast fungus, Magnaporthe grisea
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	seedlings	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	The tcd33 seedlings also exhibited less chlorophyll contents and severe defects of chloroplast structure under 20 C condition
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	chloroplast	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	chloroplast	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	The tcd33 seedlings also exhibited less chlorophyll contents and severe defects of chloroplast structure under 20 C condition
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	chloroplast	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	The transcript expression level of TCD33 indicated that the genes related to chlorophyll (Chl) biosynthesis, photosynthesis, and chloroplast development in tcd33 mutants were down-regulated at 20 C, while the down-regulated genes were nearly recovered to or slightly higher than the WT level at 32 C
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	chloroplast	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	Together, our results suggest that the cold-inducible TCD33 is essential for early chloroplast development and is important for cold-responsive gene regulation and cold tolerance in rice
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	seedling	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	development	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	development	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	The transcript expression level of TCD33 indicated that the genes related to chlorophyll (Chl) biosynthesis, photosynthesis, and chloroplast development in tcd33 mutants were down-regulated at 20 C, while the down-regulated genes were nearly recovered to or slightly higher than the WT level at 32 C
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	development	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	Together, our results suggest that the cold-inducible TCD33 is essential for early chloroplast development and is important for cold-responsive gene regulation and cold tolerance in rice
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	map-based cloning	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	Map-based cloning and complementation experiments suggested that TCD33 encodes a chloroplast-located DEAD-box RNA helicase protein
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	tolerance	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	Together, our results suggest that the cold-inducible TCD33 is essential for early chloroplast development and is important for cold-responsive gene regulation and cold tolerance in rice
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	cold tolerance	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	Together, our results suggest that the cold-inducible TCD33 is essential for early chloroplast development and is important for cold-responsive gene regulation and cold tolerance in rice
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	cold stress	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	chloroplast development	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	chloroplast development	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	The transcript expression level of TCD33 indicated that the genes related to chlorophyll (Chl) biosynthesis, photosynthesis, and chloroplast development in tcd33 mutants were down-regulated at 20 C, while the down-regulated genes were nearly recovered to or slightly higher than the WT level at 32 C
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	chloroplast development	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	Together, our results suggest that the cold-inducible TCD33 is essential for early chloroplast development and is important for cold-responsive gene regulation and cold tolerance in rice
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	chlorophyll content	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	The tcd33 seedlings also exhibited less chlorophyll contents and severe defects of chloroplast structure under 20 C condition
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	cold	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	cold	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	Together, our results suggest that the cold-inducible TCD33 is essential for early chloroplast development and is important for cold-responsive gene regulation and cold tolerance in rice
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	helicase	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.
OsBIRH1|TCD33	Os03g0108600	LOC_Os03g01830	helicase	A DEAD-box RNA helicase TCD33 that confers chloroplast development in rice at seedling stage under cold stress.	Map-based cloning and complementation experiments suggested that TCD33 encodes a chloroplast-located DEAD-box RNA helicase protein
OsBISAMT1	Os11g0256900	LOC_Os11g15040	disease	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses	Expression of OsBISAMT1 in rice leaves was induced by treatments with benzothiadiazole and salicylic acid, which are capable of inducing rice disease resistance
OsBISAMT1	Os11g0256900	LOC_Os11g15040	disease	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses	The results suggest that OsBISAMT1 may be involved in disease resistance responses as well as in wound response in rice
OsBISAMT1	Os11g0256900	LOC_Os11g15040	defense	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses
OsBISAMT1	Os11g0256900	LOC_Os11g15040	salicylic acid	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses	Expression of OsBISAMT1 in rice leaves was induced by treatments with benzothiadiazole and salicylic acid, which are capable of inducing rice disease resistance
OsBISAMT1	Os11g0256900	LOC_Os11g15040	salicylic acid	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses
OsBISAMT1	Os11g0256900	LOC_Os11g15040	defense response	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses
OsBISAMT1	Os11g0256900	LOC_Os11g15040	blast	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses	OsBISAMT1 was also up-regulated in both incompatible and compatible interactions between rice and the blast fungus, Magnaporthe grsiea, but the induced expression of OsBISAMT1 was greater and more rapid in the incompatible interaction than that in the compatible one
OsBISAMT1	Os11g0256900	LOC_Os11g15040	disease resistance	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses	Expression of OsBISAMT1 in rice leaves was induced by treatments with benzothiadiazole and salicylic acid, which are capable of inducing rice disease resistance
OsBISAMT1	Os11g0256900	LOC_Os11g15040	disease resistance	OsBISAMT1, a gene encoding S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses	The results suggest that OsBISAMT1 may be involved in disease resistance responses as well as in wound response in rice
OsBISCPL1	Os08g0560500	LOC_Os08g44640	blast	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	Expression of OsBISCPL1 in leaves was significantly up-regulated after treatments with benzothiadiazole, salicylic acid, jasmonic acid and 1-amino cyclopropane-1-carboxylic acid, and also up-regulated in incompatible interactions between rice and the blast fungus, Magnaporthe grisea
OsBISCPL1	Os08g0560500	LOC_Os08g44640	oxidative	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	Furthermore, the OsBISCPL1-overexpressing plants also showed an increased tolerance to oxidative stress and up-regulated expression of oxidative stress-related genes
OsBISCPL1	Os08g0560500	LOC_Os08g44640	oxidative	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	The results suggest that the OsBISCPL1 may be involved in regulation of defense responses against pathogen infection and oxidative stress
OsBISCPL1	Os08g0560500	LOC_Os08g44640	oxidative	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress
OsBISCPL1	Os08g0560500	LOC_Os08g44640	stem	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	OsBISCPL1 is expressed ubiquitously in rice, including roots, stems, leaves and spikes
OsBISCPL1	Os08g0560500	LOC_Os08g44640	disease	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	Transgenic Arabidopsis plants with constitutive expression of OsBISCPL1 were generated and disease resistance assays indicated that the OsBISCPL1-overexpressing plants showed an enhanced disease resistance against Pseudomonas syringae pv
OsBISCPL1	Os08g0560500	LOC_Os08g44640	jasmonic acid	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	Expression of OsBISCPL1 in leaves was significantly up-regulated after treatments with benzothiadiazole, salicylic acid, jasmonic acid and 1-amino cyclopropane-1-carboxylic acid, and also up-regulated in incompatible interactions between rice and the blast fungus, Magnaporthe grisea
OsBISCPL1	Os08g0560500	LOC_Os08g44640	defense	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	The results suggest that the OsBISCPL1 may be involved in regulation of defense responses against pathogen infection and oxidative stress
OsBISCPL1	Os08g0560500	LOC_Os08g44640	defense	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress
OsBISCPL1	Os08g0560500	LOC_Os08g44640	root	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	OsBISCPL1 is expressed ubiquitously in rice, including roots, stems, leaves and spikes
OsBISCPL1	Os08g0560500	LOC_Os08g44640	salicylic acid	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	Expression of OsBISCPL1 in leaves was significantly up-regulated after treatments with benzothiadiazole, salicylic acid, jasmonic acid and 1-amino cyclopropane-1-carboxylic acid, and also up-regulated in incompatible interactions between rice and the blast fungus, Magnaporthe grisea
OsBISCPL1	Os08g0560500	LOC_Os08g44640	disease resistance	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	Transgenic Arabidopsis plants with constitutive expression of OsBISCPL1 were generated and disease resistance assays indicated that the OsBISCPL1-overexpressing plants showed an enhanced disease resistance against Pseudomonas syringae pv
OsBISCPL1	Os08g0560500	LOC_Os08g44640	defense response	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	The results suggest that the OsBISCPL1 may be involved in regulation of defense responses against pathogen infection and oxidative stress
OsBISCPL1	Os08g0560500	LOC_Os08g44640	defense response	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress
OsBISCPL1	Os08g0560500	LOC_Os08g44640	jasmonic	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress	Expression of OsBISCPL1 in leaves was significantly up-regulated after treatments with benzothiadiazole, salicylic acid, jasmonic acid and 1-amino cyclopropane-1-carboxylic acid, and also up-regulated in incompatible interactions between rice and the blast fungus, Magnaporthe grisea
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	leaf	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	OsBISERK1 has a low level of basal expression in leaf tissue
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	shoot	Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection	Suppression of OsSERK1 expression in transgenic calli by RNA interference resulted in a significant reduction of shoot regeneration rate (from 72% to 14% in the japonica rice Zhonghua11)
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	shoot	Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection	Overexpression of OsSERK1, however, increased the shoot regeneration rate (from 72% to 86%)
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	cell death	Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection	Interestingly, OsSERK1 is significantly activated by the rice blast fungus, particularly during the incompatible interaction, and is associated with host cell death in Sekigushi lesion mimic mutants
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	disease resistance	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	However, expression of OsBISERK1 was induced by treatment with benzothiadiazole (BTH), which is capable of inducing disease resistance in rice, and also up-regulated after inoculation with Magnaporthe grisea in BTH-treated rice seedlings and during incompatible interaction between a blast-resistant rice genotype and M
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	disease resistance	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	The results suggest that OsBISERK1 may be involved in disease resistance responses in rice
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	disease resistance	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	resistant	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	However, expression of OsBISERK1 was induced by treatment with benzothiadiazole (BTH), which is capable of inducing disease resistance in rice, and also up-regulated after inoculation with Magnaporthe grisea in BTH-treated rice seedlings and during incompatible interaction between a blast-resistant rice genotype and M
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	leaf	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice	Most of the OsBAK1RNAi transgenic rice plants were defective in the development of bulliform cells in the leaf epidermal layer
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	leaf	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	architecture	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Here, we identified OsBAK1 as a potential gene to alter rice architecture
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	architecture	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Therefore, OsBAK1 is a potential molecular breeding tool for improving rice grain yield by modifying rice architecture
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	architecture	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	defense	Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection	Our data suggest that OsSERK1 may partially mediate defense signal transduction in addition to its basic role in somatic embryogenesis
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	blast	Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection	Interestingly, OsSERK1 is significantly activated by the rice blast fungus, particularly during the incompatible interaction, and is associated with host cell death in Sekigushi lesion mimic mutants
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	blast	Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection	Furthermore, constitutive overexpression of OsSERK1 in two rice cultivars led to an increase in host resistance to the blast fungus
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	seed	Expression of SERK family receptor-like protein kinase genes in rice	The OsSERK1 promoter showed reporter gene activities in some specific tissues in a germinating seed, leaf and root, but not in a developing embryo
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	grain	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	The expression of OsBAK1 changed important agricultural traits of rice such as plant height, leaf erectness, grain morphologic features, and disease resistance responses
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	grain	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Therefore, OsBAK1 is a potential molecular breeding tool for improving rice grain yield by modifying rice architecture
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	yield	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Therefore, OsBAK1 is a potential molecular breeding tool for improving rice grain yield by modifying rice architecture
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	yield	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	height	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	The expression of OsBAK1 changed important agricultural traits of rice such as plant height, leaf erectness, grain morphologic features, and disease resistance responses
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	blast	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	However, expression of OsBISERK1 was induced by treatment with benzothiadiazole (BTH), which is capable of inducing disease resistance in rice, and also up-regulated after inoculation with Magnaporthe grisea in BTH-treated rice seedlings and during incompatible interaction between a blast-resistant rice genotype and M
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	leaf	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	The expression of OsBAK1 changed important agricultural traits of rice such as plant height, leaf erectness, grain morphologic features, and disease resistance responses
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	leaf	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Our results suggested that a new rice variety with erect-leaf and normal reproduction can be generated simply by suppressing the expression level of OsBAK1
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	seedling	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	However, expression of OsBISERK1 was induced by treatment with benzothiadiazole (BTH), which is capable of inducing disease resistance in rice, and also up-regulated after inoculation with Magnaporthe grisea in BTH-treated rice seedlings and during incompatible interaction between a blast-resistant rice genotype and M
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	breeding	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Therefore, OsBAK1 is a potential molecular breeding tool for improving rice grain yield by modifying rice architecture
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	grain yield	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Therefore, OsBAK1 is a potential molecular breeding tool for improving rice grain yield by modifying rice architecture
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	disease	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	The expression of OsBAK1 changed important agricultural traits of rice such as plant height, leaf erectness, grain morphologic features, and disease resistance responses
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	leaf	Expression of SERK family receptor-like protein kinase genes in rice	The OsSERK1 promoter showed reporter gene activities in some specific tissues in a germinating seed, leaf and root, but not in a developing embryo
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	growth	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice	These results indicate that OsSERK genes, such as OsBAK1, play versatile roles in rice growth and development
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	growth	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	dwarf	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Overexpression of a truncated intracellular domain of OsBAK1, but not the extracellular domain of OsBAK1, resulted in a dwarfed phenotype, similar to the rice BR-insensitive mutant plants
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	disease resistance	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	The expression of OsBAK1 changed important agricultural traits of rice such as plant height, leaf erectness, grain morphologic features, and disease resistance responses
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	disease	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	However, expression of OsBISERK1 was induced by treatment with benzothiadiazole (BTH), which is capable of inducing disease resistance in rice, and also up-regulated after inoculation with Magnaporthe grisea in BTH-treated rice seedlings and during incompatible interaction between a blast-resistant rice genotype and M
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	disease	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	The results suggest that OsBISERK1 may be involved in disease resistance responses in rice
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	disease	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	erect	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	The expression of OsBAK1 changed important agricultural traits of rice such as plant height, leaf erectness, grain morphologic features, and disease resistance responses
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	erect	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield	Our results suggested that a new rice variety with erect-leaf and normal reproduction can be generated simply by suppressing the expression level of OsBAK1
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	root	Expression of SERK family receptor-like protein kinase genes in rice	The OsSERK1 promoter showed reporter gene activities in some specific tissues in a germinating seed, leaf and root, but not in a developing embryo
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	leaf development	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	development	OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae	OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	dwarf	OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae	Overexpression of OsSerk1 results in a semi-dwarf phenotype whereas silencing of OsSerk1 results in a reduced angle of the lamina joint.
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	angle of the lamina joint	OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae	Overexpression of OsSerk1 results in a semi-dwarf phenotype whereas silencing of OsSerk1 results in a reduced angle of the lamina joint.
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	lamina joint	OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae	Overexpression of OsSerk1 results in a semi-dwarf phenotype whereas silencing of OsSerk1 results in a reduced angle of the lamina joint.
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	grain	08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice.	The grain size and number of knockout mutants of OsBAK1 in the japonica background were significantly decreased, but less so than in 08sg2, supporting the idea that the SNP in OsBAK1 was responsible for the 08sg2 phenotype, but that 08SG2/OsBAK1 function differently in indica and japonica backgrounds
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	grain size	08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice.	The grain size and number of knockout mutants of OsBAK1 in the japonica background were significantly decreased, but less so than in 08sg2, supporting the idea that the SNP in OsBAK1 was responsible for the 08sg2 phenotype, but that 08SG2/OsBAK1 function differently in indica and japonica backgrounds
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	map-based cloning	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Map-based cloning, together with transgenic complementation and RNA-interference tests, revealed that TBP1 is a member of the somatic embryogenesis receptor kinases (SERKs) family involved in BR signaling
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	architecture	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Taken together, our results demonstrate that TBP1 plays a significant role in regulating plant architecture via the brassinosteroid signaling pathway
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	brassinosteroid	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Taken together, our results demonstrate that TBP1 plays a significant role in regulating plant architecture via the brassinosteroid signaling pathway
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	BR	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Map-based cloning, together with transgenic complementation and RNA-interference tests, revealed that TBP1 is a member of the somatic embryogenesis receptor kinases (SERKs) family involved in BR signaling
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	Brassinosteroid	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Taken together, our results demonstrate that TBP1 plays a significant role in regulating plant architecture via the brassinosteroid signaling pathway
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	BR signaling	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Map-based cloning, together with transgenic complementation and RNA-interference tests, revealed that TBP1 is a member of the somatic embryogenesis receptor kinases (SERKs) family involved in BR signaling
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	erect	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Compared to wild type, tbp1 mutant plants displayed semi-dwarf stature, erect leaves, small and round grains, as well as more tillers
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	Brassinosteroid Signaling	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Taken together, our results demonstrate that TBP1 plays a significant role in regulating plant architecture via the brassinosteroid signaling pathway
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	plant architecture	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Taken together, our results demonstrate that TBP1 plays a significant role in regulating plant architecture via the brassinosteroid signaling pathway
OsBISERK1|OsSERK1|OsBAK1|TBP1	Os08g0174700	LOC_Os08g07760	receptor kinase	Top Bending Panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice	Map-based cloning, together with transgenic complementation and RNA-interference tests, revealed that TBP1 is a member of the somatic embryogenesis receptor kinases (SERKs) family involved in BR signaling
OsBLE1	Os05g0122900	LOC_Os05g03150	iaa	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings	OsBLE1 expression was most responsive to BL in lamina joint in rice seedlings; besides, IAA and GA3 also enhanced its expression
OsBLE1	Os05g0122900	LOC_Os05g03150	root	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings	OsBLE1 expressed mainly in active tissues such as vascular bundles and root primordial
OsBLE1	Os05g0122900	LOC_Os05g03150	lamina	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings	OsBLE1 expression was most responsive to BL in lamina joint in rice seedlings; besides, IAA and GA3 also enhanced its expression
OsBLE1	Os05g0122900	LOC_Os05g03150	seedling	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings	OsBLE1 expression was most responsive to BL in lamina joint in rice seedlings; besides, IAA and GA3 also enhanced its expression
OsBLE1	Os05g0122900	LOC_Os05g03150	seedling	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings	Results suggest that OsBLE1 might be involved in BL-regulated growth processes in rice seedlings
OsBLE1	Os05g0122900	LOC_Os05g03150	seedling	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings
OsBLE1	Os05g0122900	LOC_Os05g03150	vascular bundle	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings	OsBLE1 expressed mainly in active tissues such as vascular bundles and root primordial
OsBLE1	Os05g0122900	LOC_Os05g03150	growth	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings	Transgenic rice expressing antisense OsBLE1 exhibits various degrees of repressed growth
OsBLE1	Os05g0122900	LOC_Os05g03150	growth	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings	Results suggest that OsBLE1 might be involved in BL-regulated growth processes in rice seedlings
OsBLE2	Os07g0650600	LOC_Os07g45570	vascular bundle	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	OsBLE2 expressed more, as revealed by in situ hybridization, in vascular bundles and root primordia, where the cells are actively undergoing division, elongation, and differentiation
OsBLE2	Os07g0650600	LOC_Os07g45570	sheath	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	OsBLE2 expression was most responsive to BL in the lamina joint and leaf sheath in rice seedlings
OsBLE2	Os07g0650600	LOC_Os07g45570	leaf	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	OsBLE2 expression was most responsive to BL in the lamina joint and leaf sheath in rice seedlings
OsBLE2	Os07g0650600	LOC_Os07g45570	seedling	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	OsBLE2 expression was most responsive to BL in the lamina joint and leaf sheath in rice seedlings
OsBLE2	Os07g0650600	LOC_Os07g45570	growth	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	Transgenic rice expressing antisense OsBLE2 exhibits various degrees of repressed growth
OsBLE2	Os07g0650600	LOC_Os07g45570	growth	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	These results suggest that OsBLE2 is involved in BL-regulated growth and development processes in rice
OsBLE2	Os07g0650600	LOC_Os07g45570	BR signaling	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	BL could not enhance its expression in transgenic rice expressing antisense BRI1, a BR receptor, indicating that BR signaling to the enhanced expression of OsBLE2 is through BRI1
OsBLE2	Os07g0650600	LOC_Os07g45570	root	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	OsBLE2 expressed more, as revealed by in situ hybridization, in vascular bundles and root primordia, where the cells are actively undergoing division, elongation, and differentiation
OsBLE2	Os07g0650600	LOC_Os07g45570	lamina	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	OsBLE2 expression was most responsive to BL in the lamina joint and leaf sheath in rice seedlings
OsBLE2	Os07g0650600	LOC_Os07g45570	BR	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice	BL could not enhance its expression in transgenic rice expressing antisense BRI1, a BR receptor, indicating that BR signaling to the enhanced expression of OsBLE2 is through BRI1
OsBLE3	Os05g0245300	LOC_Os05g15630	cell elongation	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	These results suggest that OsBLE3 is involved in cell elongation in rice through dual regulation by BL and IAA
OsBLE3	Os05g0245300	LOC_Os05g15630	shoot apical meristem	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	In situ hybridization detected OsBLE3 mRNA in the shoot apical meristem, organ primordia and vascular tissue
OsBLE3	Os05g0245300	LOC_Os05g15630	growth	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	Reduced OsBLE3 expression and growth retardation was also observed in OsBLE3 antisense transgenic rice plants
OsBLE3	Os05g0245300	LOC_Os05g15630	growth	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice
OsBLE3	Os05g0245300	LOC_Os05g15630	iaa	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	These results suggest that OsBLE3 is involved in cell elongation in rice through dual regulation by BL and IAA
OsBLE3	Os05g0245300	LOC_Os05g15630	auxin	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	These results, and the existence of auxin response elements in the 5'-flanking region of the OsBLE3 gene, indicate that OsBLE3 expression is under control of both BR and auxin
OsBLE3	Os05g0245300	LOC_Os05g15630	BR	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	To investigate the mechanism of BR action in monocots, a brassinolide (BL) upregulated gene designated OsBLE3 was identified, cloned and characterized in rice
OsBLE3	Os05g0245300	LOC_Os05g15630	BR	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	These results, and the existence of auxin response elements in the 5'-flanking region of the OsBLE3 gene, indicate that OsBLE3 expression is under control of both BR and auxin
OsBLE3	Os05g0245300	LOC_Os05g15630	meristem	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	In situ hybridization detected OsBLE3 mRNA in the shoot apical meristem, organ primordia and vascular tissue
OsBLE3	Os05g0245300	LOC_Os05g15630	shoot	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	In situ hybridization detected OsBLE3 mRNA in the shoot apical meristem, organ primordia and vascular tissue
OsBLE3	Os05g0245300	LOC_Os05g15630	root	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	The GUS reporter gene driven by a 2277 bp OsBLE3 putative promoter was mainly expressed in vascular tissues, branch root primordia and was responsive to exogenous BL treatment
OsBLH1	Os12g0160500	LOC_Os12g06340	transcription factor	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OsBLH1	Os12g0160500	LOC_Os12g06340	meristem	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OsBLH6	Os03g0165300	LOC_Os03g06930	cell wall	Identification of transcription factors involved in rice secondary cell wall formation	Further analyses were performed for the OsMYB55/61 and OsBLH6 TFs, the former being a TF in which the Arabidopsis ortholog is known to participate in lignin biosynthesis (AtMYB61) and the latter being one for which no previous involvement in cell wall formation has been reported even in Arabidopsis (BLH6)
OsBLH6	Os03g0165300	LOC_Os03g06930	cell wall	Identification of transcription factors involved in rice secondary cell wall formation	Moreover, expression of a reporter gene driven by the OsCAD2 promoter was enhanced in rice calli when OsMYB55/61 or OsBLH6 was transiently expressed, demonstrating that they function in secondary cell wall formation
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	leaf	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	leaf	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	Lines overexpressing OsBLR1 (blr1-D and BLR1-OE-1/2/3) had similar traits, with increased leaf angle and grain length
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	transcription factor	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	grain	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	Lines overexpressing OsBLR1 (blr1-D and BLR1-OE-1/2/3) had similar traits, with increased leaf angle and grain length
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	grain length	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	Lines overexpressing OsBLR1 (blr1-D and BLR1-OE-1/2/3) had similar traits, with increased leaf angle and grain length
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	brassinosteroid	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	BR	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	These results suggest that OsBLR1 is involved in BR signal transduction
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	Brassinosteroid	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	signal transduction	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	These results suggest that OsBLR1 is involved in BR signal transduction
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	transcription factor	The Rice Basic Helix-Loop-Helix 79 (OsbHLH079) Determines Leaf Angle and Grain Shape.	Among the basic Helix-Loop-Helix (bHLH) transcription factors in rice (Oryza sativa), we found an enhancer-trap T-DNA insertion mutant of OsbHLH079 (termed osbhlh079-D)
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	BR	The Rice Basic Helix-Loop-Helix 79 (OsbHLH079) Determines Leaf Angle and Grain Shape.	Taking these observations together, we propose that OsbHLH079 functions as a positive regulator of BR signaling in rice
OsBLR1|OsbHLH079	Os02g0705500	LOC_Os02g47660	BR signaling	The Rice Basic Helix-Loop-Helix 79 (OsbHLH079) Determines Leaf Angle and Grain Shape.	Taking these observations together, we propose that OsbHLH079 functions as a positive regulator of BR signaling in rice
OsBMY4	Os03g0141200	LOC_Os03g04770	stress	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
OsBMY4	Os03g0141200	LOC_Os03g04770	seed	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
OsBMY4	Os03g0141200	LOC_Os03g04770	starch	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 In this study, OsBMY4 and OsISA3, the key β-amylase and debranching enzymes that control transient starch degradation in rice leaves, were co-overexpressed in rice in order to accelerate starch degradation efficiency and increase the sugar supply for sink organs
OsBMY4	Os03g0141200	LOC_Os03g04770	quality	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Moreover, since the OsBMY4 gene has not been characterized, we generated osbmy4 mutants using CRIPSR/Cas9 gene editing, which helped to reveal the roles of β-amylase in rice yield and quality
OsBMY4	Os03g0141200	LOC_Os03g04770	seed germination	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
OsBMY4	Os03g0141200	LOC_Os03g04770	tolerance	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
OsBMY4	Os03g0141200	LOC_Os03g04770	yield	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
OsBMY4	Os03g0141200	LOC_Os03g04770	yield	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Moreover, since the OsBMY4 gene has not been characterized, we generated osbmy4 mutants using CRIPSR/Cas9 gene editing, which helped to reveal the roles of β-amylase in rice yield and quality
OsBMY4	Os03g0141200	LOC_Os03g04770	stress tolerance	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 Systematic analyses of the transgenic rice indicated that co-overexpression of OsBMY4 and OsISA3 not only promoted rice yield and quality, but also improved seed germination and stress tolerance
OsBMY4	Os03g0141200	LOC_Os03g04770	sugar	Co-Overexpression of Two Key Source Genes, OsBMY4 and OsISA3, Improves Multiple Key Traits of Rice Seeds.	 In this study, OsBMY4 and OsISA3, the key β-amylase and debranching enzymes that control transient starch degradation in rice leaves, were co-overexpressed in rice in order to accelerate starch degradation efficiency and increase the sugar supply for sink organs
OsBON1	Os02g0521300	LOC_Os02g32160	temperature	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	The defense activation in OsBON1 knockdown mutants was associated with reduced growth, both of which were largely suppressed under high temperature
OsBON1	Os02g0521300	LOC_Os02g32160	growth	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON1	Os02g0521300	LOC_Os02g32160	resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Knockdown of OsBON1 and dominant negative mutant of OsBON3 enhanced resistance to rice bacterial and fungal pathogens with either hemibiotrophic or necrotrophic life styles
OsBON1	Os02g0521300	LOC_Os02g32160	resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON1	Os02g0521300	LOC_Os02g32160	defense	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	The defense activation in OsBON1 knockdown mutants was associated with reduced growth, both of which were largely suppressed under high temperature
OsBON1	Os02g0521300	LOC_Os02g32160	disease	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.
OsBON1	Os02g0521300	LOC_Os02g32160	disease	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON1	Os02g0521300	LOC_Os02g32160	disease resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.
OsBON1	Os02g0521300	LOC_Os02g32160	disease resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON1	Os02g0521300	LOC_Os02g32160	dwarf	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	However, neither OsBON1 nor OsBON3 could rescue the dwarf phenotype of the Arabidopsis BON1 knockout mutant, suggesting an evolutionary divergence of the rice and Arabidopsis copine genes
OsBON1	Os02g0521300	LOC_Os02g32160	R protein	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Both OsBON1 and OsBON3 changed their protein subcellular localization upon pathogen challenge
OsBON1	Os02g0521300	LOC_Os02g32160	immunity	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Here, we show that the rice copine genes OsBON1 and OsBON3 are critical suppressors of immunity
OsBON1	Os02g0521300	LOC_Os02g32160	pathogen	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Both OsBON1 and OsBON3 changed their protein subcellular localization upon pathogen challenge
OsBON1	Os02g0521300	LOC_Os02g32160	plant growth	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON1	Os02g0521300	LOC_Os02g32160	broad-spectrum disease resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.
OsBON3	Os05g0373300	LOC_Os05g30970	growth	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON3	Os05g0373300	LOC_Os05g30970	resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Knockdown of OsBON1 and dominant negative mutant of OsBON3 enhanced resistance to rice bacterial and fungal pathogens with either hemibiotrophic or necrotrophic life styles
OsBON3	Os05g0373300	LOC_Os05g30970	resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON3	Os05g0373300	LOC_Os05g30970	disease	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.
OsBON3	Os05g0373300	LOC_Os05g30970	disease	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON3	Os05g0373300	LOC_Os05g30970	disease resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.
OsBON3	Os05g0373300	LOC_Os05g30970	disease resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON3	Os05g0373300	LOC_Os05g30970	dwarf	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	However, neither OsBON1 nor OsBON3 could rescue the dwarf phenotype of the Arabidopsis BON1 knockout mutant, suggesting an evolutionary divergence of the rice and Arabidopsis copine genes
OsBON3	Os05g0373300	LOC_Os05g30970	R protein	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Both OsBON1 and OsBON3 changed their protein subcellular localization upon pathogen challenge
OsBON3	Os05g0373300	LOC_Os05g30970	immunity	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Here, we show that the rice copine genes OsBON1 and OsBON3 are critical suppressors of immunity
OsBON3	Os05g0373300	LOC_Os05g30970	pathogen	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Both OsBON1 and OsBON3 changed their protein subcellular localization upon pathogen challenge
OsBON3	Os05g0373300	LOC_Os05g30970	plant growth	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	In contrast, overexpression of OsBON1 or OsBON3 decreased disease resistance and promoted plant growth
OsBON3	Os05g0373300	LOC_Os05g30970	broad-spectrum disease resistance	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.
OsBOR1	Os12g0566000	LOC_Os12g37840	boron transporter	Cell-type specificity of the expression of Os BOR1, a rice efflux boron transporter gene, is regulated in response to boron availability for efficient boron uptake and xylem loading.	Cell-type specificity of the expression of Os BOR1, a rice efflux boron transporter gene, is regulated in response to boron availability for efficient boron uptake and xylem loading.
OsBOR1	Os12g0566000	LOC_Os12g37840	boron uptake	Cell-type specificity of the expression of Os BOR1, a rice efflux boron transporter gene, is regulated in response to boron availability for efficient boron uptake and xylem loading.	Cell-type specificity of the expression of Os BOR1, a rice efflux boron transporter gene, is regulated in response to boron availability for efficient boron uptake and xylem loading.
OsBOR1	Os12g0566000	LOC_Os12g37840	leaf	Fine regulation system for distribution of boron to different tissues in rice	The OsBOR1 protein shows polar localization at the distal side of bundle sheath cells in nodes and xylem parenchyma cells of elongating leaf sheath, but at the proximal side of bundle sheath in the mature leaf sheath and blade
OsBOR1	Os12g0566000	LOC_Os12g37840	leaf	Fine regulation system for distribution of boron to different tissues in rice	These results indicate that OsBOR1 expressed in nodes and leaf sheath is involved in the proper distribution of B to different tissues in rice
OsBOR1	Os12g0566000	LOC_Os12g37840	xylem	Fine regulation system for distribution of boron to different tissues in rice	The OsBOR1 protein shows polar localization at the distal side of bundle sheath cells in nodes and xylem parenchyma cells of elongating leaf sheath, but at the proximal side of bundle sheath in the mature leaf sheath and blade
OsBOR1	Os12g0566000	LOC_Os12g37840	growth	Fine regulation system for distribution of boron to different tissues in rice	OsBOR1 was highly expressed in the nodes at all growth stages
OsBOR1	Os12g0566000	LOC_Os12g37840	sheath	Fine regulation system for distribution of boron to different tissues in rice	The OsBOR1 protein shows polar localization at the distal side of bundle sheath cells in nodes and xylem parenchyma cells of elongating leaf sheath, but at the proximal side of bundle sheath in the mature leaf sheath and blade
OsBOR1	Os12g0566000	LOC_Os12g37840	sheath	Fine regulation system for distribution of boron to different tissues in rice	These results indicate that OsBOR1 expressed in nodes and leaf sheath is involved in the proper distribution of B to different tissues in rice
OsBOR1	Os12g0566000	LOC_Os12g37840	xylem parenchyma	Fine regulation system for distribution of boron to different tissues in rice	The OsBOR1 protein shows polar localization at the distal side of bundle sheath cells in nodes and xylem parenchyma cells of elongating leaf sheath, but at the proximal side of bundle sheath in the mature leaf sheath and blade
OsBOR4	Os05g0176800	LOC_Os05g08430	pollen	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	Quantitative PCR analysis and OsBOR4 promoter-green fluorescent protein (GFP) fusion revealed that OsBOR4 was both highly and specifically expressed in pollen
OsBOR4	Os05g0176800	LOC_Os05g08430	pollen	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	The pollen grains were viable and development of floral organs was normal in the homozygous osbor4 mutants
OsBOR4	Os05g0176800	LOC_Os05g08430	pollen	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	Pollen from osbor4 homozygous plants elongated fewer tubes on wild-type stigmas, and tube elongation of mutant pollen was less efficient compared with the wild-type pollen, suggesting reduced competence of osbor4 mutant pollen
OsBOR4	Os05g0176800	LOC_Os05g08430	pollen	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	The reduced competence of mutant pollen was further supported by the crosses of independent Tos17-inserted alleles of OsBOR4
OsBOR4	Os05g0176800	LOC_Os05g08430	pollen	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	Our results suggest that OsBOR4, a boron efflux transporter, is required for normal pollen germination and/or tube elongation
OsBOR4	Os05g0176800	LOC_Os05g08430	pollen	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process
OsBOR4	Os05g0176800	LOC_Os05g08430	floral	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	The pollen grains were viable and development of floral organs was normal in the homozygous osbor4 mutants
OsBOR4	Os05g0176800	LOC_Os05g08430	transporter	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	OsBOR4 is an active efflux transporter of B
OsBOR4	Os05g0176800	LOC_Os05g08430	transporter	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	Our results suggest that OsBOR4, a boron efflux transporter, is required for normal pollen germination and/or tube elongation
OsBOR4	Os05g0176800	LOC_Os05g08430	transporter	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process
OsBOR4	Os05g0176800	LOC_Os05g08430	grain	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	The pollen grains were viable and development of floral organs was normal in the homozygous osbor4 mutants
OsBOR4	Os05g0176800	LOC_Os05g08430	reproductive	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	These results establish that OsBOR4 is essential for normal reproductive processes
OsBOR4	Os05g0176800	LOC_Os05g08430	boron	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	Our results suggest that OsBOR4, a boron efflux transporter, is required for normal pollen germination and/or tube elongation
OsBOR4	Os05g0176800	LOC_Os05g08430	boron	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process	Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process
OsBP-73	Os03g0183100	LOC_Os03g08480	leaf	OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth	Northern blot analysis demonstrated that OsBP-73 is weakly expressed in root, leaf and immature seed
OsBP-73	Os03g0183100	LOC_Os03g08480	growth	OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth	Genetic interference of OsBP-73 gene expression by double-stranded RNA strikingly inhibits the whole plant growth but does not affect the passage from the juvenile to adult phase
OsBP-73	Os03g0183100	LOC_Os03g08480	growth	OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth	OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth
OsBP-73	Os03g0183100	LOC_Os03g08480	seed	OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth	Northern blot analysis demonstrated that OsBP-73 is weakly expressed in root, leaf and immature seed
OsBP-73	Os03g0183100	LOC_Os03g08480	root	OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth	Northern blot analysis demonstrated that OsBP-73 is weakly expressed in root, leaf and immature seed
OsBRCA2	Os01g0164800|Os01g0164900	LOC_Os01g07110	growth	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	Osbrca2 mutant plants exhibit normal vegetative growth but experience complete male and female sterility as a consequence of severe meiotic defects
OsBRCA2	Os01g0164800|Os01g0164900	LOC_Os01g07110	sterility	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	Osbrca2 mutant plants exhibit normal vegetative growth but experience complete male and female sterility as a consequence of severe meiotic defects
OsBRCA2	Os01g0164800|Os01g0164900	LOC_Os01g07110	vegetative	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	Osbrca2 mutant plants exhibit normal vegetative growth but experience complete male and female sterility as a consequence of severe meiotic defects
OsBRCA2	Os01g0164800|Os01g0164900	LOC_Os01g07110	meiosis	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	These results indicate that OsBRCA2 is essential for facilitating the loading of OsRAD51 and OsDMC1 onto resected ends of programmed double-strand breaks (DSB) during meiosis to promote single-end invasions of homologous chromosomes and accurate recombination
OsBRCA2	Os01g0164800|Os01g0164900	LOC_Os01g07110	meiotic	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells
OsBRCA2	Os01g0164800|Os01g0164900	LOC_Os01g07110	meiotic	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	Osbrca2 mutant plants exhibit normal vegetative growth but experience complete male and female sterility as a consequence of severe meiotic defects
OsBRCA2	Os01g0164800|Os01g0164900	LOC_Os01g07110	meiotic	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	In the absence of OsBRCA2, localization to the meiotic chromosome axes of the strand-invasion proteins OsRAD51 and OsDMC1 is severely reduced and in vitro OsBRCA2 directly interacts with OsRAD51 and OsDMC1
OsBRCA2	Os01g0164800|Os01g0164900	LOC_Os01g07110	male sterility	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	Osbrca2 mutant plants exhibit normal vegetative growth but experience complete male and female sterility as a consequence of severe meiotic defects
OsBRL1	Os09g0293500	LOC_Os09g12240	BR	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	In addition, OsBRL1 and OsBRL3 are at least partly involved in BR perception in the roots
OsBRL1	Os09g0293500	LOC_Os09g12240	shoot	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	The homologous genes for OsBRI1, OsBRL1 and OsBRL3, were highly expressed in roots but weakly expressed in shoots, and their expression was higher in d61-4 than in the wild type
OsBRL1	Os09g0293500	LOC_Os09g12240	root	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	The homologous genes for OsBRI1, OsBRL1 and OsBRL3, were highly expressed in roots but weakly expressed in shoots, and their expression was higher in d61-4 than in the wild type
OsBRL1	Os09g0293500	LOC_Os09g12240	root	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	In addition, OsBRL1 and OsBRL3 are at least partly involved in BR perception in the roots
OsBRL3	Os08g0342300	LOC_Os08g25380	BR	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	In addition, OsBRL1 and OsBRL3 are at least partly involved in BR perception in the roots
OsBRL3	Os08g0342300	LOC_Os08g25380	shoot	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	The homologous genes for OsBRI1, OsBRL1 and OsBRL3, were highly expressed in roots but weakly expressed in shoots, and their expression was higher in d61-4 than in the wild type
OsBRL3	Os08g0342300	LOC_Os08g25380	root	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	The homologous genes for OsBRI1, OsBRL1 and OsBRL3, were highly expressed in roots but weakly expressed in shoots, and their expression was higher in d61-4 than in the wild type
OsBRL3	Os08g0342300	LOC_Os08g25380	root	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice	In addition, OsBRL1 and OsBRL3 are at least partly involved in BR perception in the roots
OsBRM	Os02g0114000	LOC_Os02g02290	development	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	 Here, we constructed ossyd and osbrm mutants using CRISPR/Cas9 technology and analyzed the effects of mutations on rice embryo development
OsBRM	Os02g0114000	LOC_Os02g02290	development	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	 We discovered that the ossyd and osbrm mutants exhibited severe defects during embryonic development, whereas endosperm development was normal
OsBRM	Os02g0114000	LOC_Os02g02290	development	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	 Collectively, our findings provide the basis for elucidating the function of OsSYD and OsBRM during embryo development in rice
OsBRM	Os02g0114000	LOC_Os02g02290	shoot	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	Chromatin remodeling ATPases OsSYD and OsBRM are involved in shoot establishment, and both affect OSH gene transcription
OsBRM	Os02g0114000	LOC_Os02g02290	endosperm	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	 We discovered that the ossyd and osbrm mutants exhibited severe defects during embryonic development, whereas endosperm development was normal
OsBRM	Os02g0114000	LOC_Os02g02290	endosperm development	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	 We discovered that the ossyd and osbrm mutants exhibited severe defects during embryonic development, whereas endosperm development was normal
OsBRM	Os02g0114000	LOC_Os02g02290	embryo	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	 Here, we constructed ossyd and osbrm mutants using CRISPR/Cas9 technology and analyzed the effects of mutations on rice embryo development
OsBRM	Os02g0114000	LOC_Os02g02290	embryo	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	 Collectively, our findings provide the basis for elucidating the function of OsSYD and OsBRM during embryo development in rice
OsBRM	Os02g0114000	LOC_Os02g02290	embryo development	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	 Here, we constructed ossyd and osbrm mutants using CRISPR/Cas9 technology and analyzed the effects of mutations on rice embryo development
OsBRM	Os02g0114000	LOC_Os02g02290	embryo development	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	 Collectively, our findings provide the basis for elucidating the function of OsSYD and OsBRM during embryo development in rice
OsBRR1	Os03g0228800	LOC_Os03g12730	growth	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	OsBRR1 expression was low in leaves and undetectable in roots under normal growth conditions, while its transcript was significantly induced in leaves infected with the blast fungus (Ken 54-04) and was moderately affected by ABA, JA and SA treatment
OsBRR1	Os03g0228800	LOC_Os03g12730	blast	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	In this study, RNA interference (RNAi) strategy was used to specifically knockdown 59 individual rice genes encoding putative LRR-RLKs, and a novel rice blast resistance-related gene (designated as OsBRR1) was identified by screening T(0) RNAi population using a weakly virulent isolate of Magnaporthe oryzae, Ken 54-04
OsBRR1	Os03g0228800	LOC_Os03g12730	blast	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	OsBRR1 expression was low in leaves and undetectable in roots under normal growth conditions, while its transcript was significantly induced in leaves infected with the blast fungus (Ken 54-04) and was moderately affected by ABA, JA and SA treatment
OsBRR1	Os03g0228800	LOC_Os03g12730	blast	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	These results indicate that OsBRR1 is involved in rice resistance responses to blast fungus and mediates resistance to rice blast
OsBRR1	Os03g0228800	LOC_Os03g12730	blast	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance
OsBRR1	Os03g0228800	LOC_Os03g12730	ja	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	OsBRR1 expression was low in leaves and undetectable in roots under normal growth conditions, while its transcript was significantly induced in leaves infected with the blast fungus (Ken 54-04) and was moderately affected by ABA, JA and SA treatment
OsBRR1	Os03g0228800	LOC_Os03g12730	sa	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	OsBRR1 expression was low in leaves and undetectable in roots under normal growth conditions, while its transcript was significantly induced in leaves infected with the blast fungus (Ken 54-04) and was moderately affected by ABA, JA and SA treatment
OsBRR1	Os03g0228800	LOC_Os03g12730	root	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	OsBRR1 expression was low in leaves and undetectable in roots under normal growth conditions, while its transcript was significantly induced in leaves infected with the blast fungus (Ken 54-04) and was moderately affected by ABA, JA and SA treatment
OsBRR1	Os03g0228800	LOC_Os03g12730	magnaporthe oryzae	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	In this study, RNA interference (RNAi) strategy was used to specifically knockdown 59 individual rice genes encoding putative LRR-RLKs, and a novel rice blast resistance-related gene (designated as OsBRR1) was identified by screening T(0) RNAi population using a weakly virulent isolate of Magnaporthe oryzae, Ken 54-04
OsBRR1	Os03g0228800	LOC_Os03g12730	blast resistance	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	In this study, RNA interference (RNAi) strategy was used to specifically knockdown 59 individual rice genes encoding putative LRR-RLKs, and a novel rice blast resistance-related gene (designated as OsBRR1) was identified by screening T(0) RNAi population using a weakly virulent isolate of Magnaporthe oryzae, Ken 54-04
OsBRR1	Os03g0228800	LOC_Os03g12730	blast resistance	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance
OsBRXL1	Os02g0700700	LOC_Os02g47230	brassinosteroid	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	OsBRXL1 and OsBRXL4 were significantly up-regulated by brassinosteroid and auxin, respectively
OsBRXL1	Os02g0700700	LOC_Os02g47230	auxin	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	OsBRXL1 and OsBRXL4 were significantly up-regulated by brassinosteroid and auxin, respectively
OsBRXL1	Os02g0700700	LOC_Os02g47230	panicle	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	Four rice BRX-like genes were predominantly (OsBRXL1, OsBRXL2, and OsBRXL4) or specifically (OsBRXL3) expressed in young panicle
OsBRXL2	Os03g0853500	LOC_Os03g63650	panicle	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	Four rice BRX-like genes were predominantly (OsBRXL1, OsBRXL2, and OsBRXL4) or specifically (OsBRXL3) expressed in young panicle
OsBRXL3	Os04g0600500	LOC_Os04g51172	panicle	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	Four rice BRX-like genes were predominantly (OsBRXL1, OsBRXL2, and OsBRXL4) or specifically (OsBRXL3) expressed in young panicle
OsBRXL4	Os08g0462700	LOC_Os08g36020	auxin	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	OsBRXL1 and OsBRXL4 were significantly up-regulated by brassinosteroid and auxin, respectively
OsBRXL4	Os08g0462700	LOC_Os08g36020	auxin	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	The OsBRXL4-overexpression plant showed significantly longer root and increased sensitivity to auxin than wild type, suggesting that OsBRXL4 may be involved in primary root growth through the auxin signaling pathway
OsBRXL4	Os08g0462700	LOC_Os08g36020	root	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	The OsBRXL4-overexpression plant showed significantly longer root and increased sensitivity to auxin than wild type, suggesting that OsBRXL4 may be involved in primary root growth through the auxin signaling pathway
OsBRXL4	Os08g0462700	LOC_Os08g36020	growth	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	The OsBRXL4-overexpression plant showed significantly longer root and increased sensitivity to auxin than wild type, suggesting that OsBRXL4 may be involved in primary root growth through the auxin signaling pathway
OsBRXL4	Os08g0462700	LOC_Os08g36020	primary root	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	The OsBRXL4-overexpression plant showed significantly longer root and increased sensitivity to auxin than wild type, suggesting that OsBRXL4 may be involved in primary root growth through the auxin signaling pathway
OsBRXL4	Os08g0462700	LOC_Os08g36020	brassinosteroid	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	OsBRXL1 and OsBRXL4 were significantly up-regulated by brassinosteroid and auxin, respectively
OsBRXL4	Os08g0462700	LOC_Os08g36020	panicle	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	Four rice BRX-like genes were predominantly (OsBRXL1, OsBRXL2, and OsBRXL4) or specifically (OsBRXL3) expressed in young panicle
OsBRXL4	Os08g0462700	LOC_Os08g36020	shoot gravitropism	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.
OsBRXL4	Os08g0462700	LOC_Os08g36020	shoot gravitropism	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Consistent with this, OsBRXL4 regulates the shoot gravitropism through affecting polar auxin transport as did LA1
OsBRXL4	Os08g0462700	LOC_Os08g36020	growth	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Overexpression of OsBRXL4 leads to a prostrate growth phenotype, whereas OsBRXLs RNAi plants, in which the expression levels of OsBRXL1, OsBRXL4, and OsBRXL5 were decreased, display a compact phenotype
OsBRXL4	Os08g0462700	LOC_Os08g36020	shoot	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.
OsBRXL4	Os08g0462700	LOC_Os08g36020	shoot	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Consistent with this, OsBRXL4 regulates the shoot gravitropism through affecting polar auxin transport as did LA1
OsBRXL4	Os08g0462700	LOC_Os08g36020	auxin	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Consistent with this, OsBRXL4 regulates the shoot gravitropism through affecting polar auxin transport as did LA1
OsBRXL4	Os08g0462700	LOC_Os08g36020	tiller	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.
OsBRXL4	Os08g0462700	LOC_Os08g36020	tiller	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Further genetic evidence confirmed that OsBRXL4 controls rice tiller angle by affecting LA1 nuclear localization
OsBRXL4	Os08g0462700	LOC_Os08g36020	tiller	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Therefore, our study not only identifies OsBRXL4 as a regulatory component of rice tiller angle, but also provides a new insight into our understanding of rice plant architecture
OsBRXL4	Os08g0462700	LOC_Os08g36020	architecture	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Therefore, our study not only identifies OsBRXL4 as a regulatory component of rice tiller angle, but also provides a new insight into our understanding of rice plant architecture
OsBRXL4	Os08g0462700	LOC_Os08g36020	auxin transport	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Consistent with this, OsBRXL4 regulates the shoot gravitropism through affecting polar auxin transport as did LA1
OsBRXL4	Os08g0462700	LOC_Os08g36020	plasma membrane	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	We showed that the interaction between OsBRXL4 and LA1 occurs at the plasma membrane and that their interaction determines LA1 nuclear localization
OsBRXL4	Os08g0462700	LOC_Os08g36020	plant architecture	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Therefore, our study not only identifies OsBRXL4 as a regulatory component of rice tiller angle, but also provides a new insight into our understanding of rice plant architecture
OsBRXL4	Os08g0462700	LOC_Os08g36020	tiller angle	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.
OsBRXL4	Os08g0462700	LOC_Os08g36020	tiller angle	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Further genetic evidence confirmed that OsBRXL4 controls rice tiller angle by affecting LA1 nuclear localization
OsBRXL4	Os08g0462700	LOC_Os08g36020	tiller angle	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Therefore, our study not only identifies OsBRXL4 as a regulatory component of rice tiller angle, but also provides a new insight into our understanding of rice plant architecture
OsBRXL4	Os08g0462700	LOC_Os08g36020	prostrate	OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization.	Overexpression of OsBRXL4 leads to a prostrate growth phenotype, whereas OsBRXLs RNAi plants, in which the expression levels of OsBRXL1, OsBRXL4, and OsBRXL5 were decreased, display a compact phenotype
OsBRXL5	Os09g0444500|Os09g0444600	LOC_Os09g27230|LOC_Os09g27220	cold	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	OsBRXL3 was responsive to drought and salt stresses, whereas OsBRXL2 and OsBRXL5 were responsive only to cold.
OsBRXL6	Os12g0193000	LOC_Os12g09080	salt	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	Except one member (OsBRXL6) that was not expressed in all the tissues and organs investigated, the other five genes were differentially responsive to major stresses including drought, salt, and cold, suggesting that the BRX-like family may also function in abiotic stress responses
OsBRXL6	Os12g0193000	LOC_Os12g09080	drought	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	Except one member (OsBRXL6) that was not expressed in all the tissues and organs investigated, the other five genes were differentially responsive to major stresses including drought, salt, and cold, suggesting that the BRX-like family may also function in abiotic stress responses
OsBRXL6	Os12g0193000	LOC_Os12g09080	abiotic stress	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	Except one member (OsBRXL6) that was not expressed in all the tissues and organs investigated, the other five genes were differentially responsive to major stresses including drought, salt, and cold, suggesting that the BRX-like family may also function in abiotic stress responses
OsBSK1-1	Os03g0132800	LOC_Os03g04050	grain	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We showed that knockout mutants of OsBSK1-1 are less sensitive to BR and exhibit a pleiotropic phenotype, including lower plant height, less tiller number and shortened grain length, whereas transgenic plants overexpressing a gain-of-function dominant mutant form of OsBSK1-1 (OsBSK1-1A295V) are hypersensitive to BR, and exhibit some enhanced BR-responsive phenotypes
OsBSK1-1	Os03g0132800	LOC_Os03g04050	grain	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
OsBSK1-1	Os03g0132800	LOC_Os03g04050	grain length	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We showed that knockout mutants of OsBSK1-1 are less sensitive to BR and exhibit a pleiotropic phenotype, including lower plant height, less tiller number and shortened grain length, whereas transgenic plants overexpressing a gain-of-function dominant mutant form of OsBSK1-1 (OsBSK1-1A295V) are hypersensitive to BR, and exhibit some enhanced BR-responsive phenotypes
OsBSK1-1	Os03g0132800	LOC_Os03g04050	grain size	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
OsBSK1-1	Os03g0132800	LOC_Os03g04050	brassinosteroid	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We found that OsBSK1-1 physically interacts with the BR receptor BRASSINOSTEROID INSENSITIVE1 (OsBRI1), and GLYCOGEN SYNTHASE KINASE2 (OsGSK2), a downstream component crucial for BR signalling
OsBSK1-1	Os03g0132800	LOC_Os03g04050	brassinosteroid	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Moreover, we showed that OsBSK1-1 can be phosphorylated by OsBRI1 and can inhibit OsGSK2-mediated phosphorylation of BRASSINOSTEROID RESISTANT1 (OsBZR1)
OsBSK1-1	Os03g0132800	LOC_Os03g04050	BR	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We showed that knockout mutants of OsBSK1-1 are less sensitive to BR and exhibit a pleiotropic phenotype, including lower plant height, less tiller number and shortened grain length, whereas transgenic plants overexpressing a gain-of-function dominant mutant form of OsBSK1-1 (OsBSK1-1A295V) are hypersensitive to BR, and exhibit some enhanced BR-responsive phenotypes
OsBSK1-1	Os03g0132800	LOC_Os03g04050	BR	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We found that OsBSK1-1 physically interacts with the BR receptor BRASSINOSTEROID INSENSITIVE1 (OsBRI1), and GLYCOGEN SYNTHASE KINASE2 (OsGSK2), a downstream component crucial for BR signalling
OsBSK1-1	Os03g0132800	LOC_Os03g04050	BR	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
OsBSK1-1	Os03g0132800	LOC_Os03g04050	Brassinosteroid	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We found that OsBSK1-1 physically interacts with the BR receptor BRASSINOSTEROID INSENSITIVE1 (OsBRI1), and GLYCOGEN SYNTHASE KINASE2 (OsGSK2), a downstream component crucial for BR signalling
OsBSK1-1	Os03g0132800	LOC_Os03g04050	Brassinosteroid	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Moreover, we showed that OsBSK1-1 can be phosphorylated by OsBRI1 and can inhibit OsGSK2-mediated phosphorylation of BRASSINOSTEROID RESISTANT1 (OsBZR1)
OsBSK1-1	Os03g0132800	LOC_Os03g04050	tiller	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We showed that knockout mutants of OsBSK1-1 are less sensitive to BR and exhibit a pleiotropic phenotype, including lower plant height, less tiller number and shortened grain length, whereas transgenic plants overexpressing a gain-of-function dominant mutant form of OsBSK1-1 (OsBSK1-1A295V) are hypersensitive to BR, and exhibit some enhanced BR-responsive phenotypes
OsBSK1-1	Os03g0132800	LOC_Os03g04050	architecture	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
OsBSK1-1	Os03g0132800	LOC_Os03g04050	 BR 	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We showed that knockout mutants of OsBSK1-1 are less sensitive to BR and exhibit a pleiotropic phenotype, including lower plant height, less tiller number and shortened grain length, whereas transgenic plants overexpressing a gain-of-function dominant mutant form of OsBSK1-1 (OsBSK1-1A295V) are hypersensitive to BR, and exhibit some enhanced BR-responsive phenotypes
OsBSK1-1	Os03g0132800	LOC_Os03g04050	 BR 	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We found that OsBSK1-1 physically interacts with the BR receptor BRASSINOSTEROID INSENSITIVE1 (OsBRI1), and GLYCOGEN SYNTHASE KINASE2 (OsGSK2), a downstream component crucial for BR signalling
OsBSK1-1	Os03g0132800	LOC_Os03g04050	 BR 	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
OsBSK1-1	Os03g0132800	LOC_Os03g04050	plant height	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We showed that knockout mutants of OsBSK1-1 are less sensitive to BR and exhibit a pleiotropic phenotype, including lower plant height, less tiller number and shortened grain length, whereas transgenic plants overexpressing a gain-of-function dominant mutant form of OsBSK1-1 (OsBSK1-1A295V) are hypersensitive to BR, and exhibit some enhanced BR-responsive phenotypes
OsBSK1-1	Os03g0132800	LOC_Os03g04050	plant architecture	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 Together, our results suggest that OsBSK1-1 may serve as a scaffold protein directly bridging OsBRI1 and OsGSK2 to positively regulate BR signalling, thus affecting plant architecture and grain size in rice
OsBSK1-1	Os03g0132800	LOC_Os03g04050	tiller number	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	 We showed that knockout mutants of OsBSK1-1 are less sensitive to BR and exhibit a pleiotropic phenotype, including lower plant height, less tiller number and shortened grain length, whereas transgenic plants overexpressing a gain-of-function dominant mutant form of OsBSK1-1 (OsBSK1-1A295V) are hypersensitive to BR, and exhibit some enhanced BR-responsive phenotypes
OsBSK1-2	Os10g0542800	LOC_Os10g39670	resistance	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Silencing OsBSK1-2 in rice results in compromised responses to chitin- or flg22-triggered immunity and resistance to Magnaporthe oryzae, but does not alter the plant's architecture nor reduce plant responses to brassinosteroid signaling
OsBSK1-2	Os10g0542800	LOC_Os10g39670	magnaporthe oryzae	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Silencing OsBSK1-2 in rice results in compromised responses to chitin- or flg22-triggered immunity and resistance to Magnaporthe oryzae, but does not alter the plant's architecture nor reduce plant responses to brassinosteroid signaling
OsBSK1-2	Os10g0542800	LOC_Os10g39670	architecture	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Silencing OsBSK1-2 in rice results in compromised responses to chitin- or flg22-triggered immunity and resistance to Magnaporthe oryzae, but does not alter the plant's architecture nor reduce plant responses to brassinosteroid signaling
OsBSK1-2	Os10g0542800	LOC_Os10g39670	brassinosteroid	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Silencing OsBSK1-2 in rice results in compromised responses to chitin- or flg22-triggered immunity and resistance to Magnaporthe oryzae, but does not alter the plant's architecture nor reduce plant responses to brassinosteroid signaling
OsBSK1-2	Os10g0542800	LOC_Os10g39670	Brassinosteroid	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Silencing OsBSK1-2 in rice results in compromised responses to chitin- or flg22-triggered immunity and resistance to Magnaporthe oryzae, but does not alter the plant's architecture nor reduce plant responses to brassinosteroid signaling
OsBSK1-2	Os10g0542800	LOC_Os10g39670	immunity	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Silencing OsBSK1-2 in rice results in compromised responses to chitin- or flg22-triggered immunity and resistance to Magnaporthe oryzae, but does not alter the plant's architecture nor reduce plant responses to brassinosteroid signaling
OsBSK1-2	Os10g0542800	LOC_Os10g39670	immunity	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Our study reveals that OsBSK1-2 functions as a major regulator in rice plant immunity
OsBSK1-2	Os10g0542800	LOC_Os10g39670	Brassinosteroid Signaling	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Silencing OsBSK1-2 in rice results in compromised responses to chitin- or flg22-triggered immunity and resistance to Magnaporthe oryzae, but does not alter the plant's architecture nor reduce plant responses to brassinosteroid signaling
OsBSK2	Os10g0571300	LOC_Os10g42110	Kinase	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 directly interacts with the BR receptor kinase OsBRI1, however, genetic experiments have demonstrated that OsBSK2 likely regulates grain size independently of the BR signaling pathway
OsBSK2	Os10g0571300	LOC_Os10g42110	grain	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 directly interacts with the BR receptor kinase OsBRI1, however, genetic experiments have demonstrated that OsBSK2 likely regulates grain size independently of the BR signaling pathway
OsBSK2	Os10g0571300	LOC_Os10g42110	grain	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 can form a homodimer or heterodimers with OsBSK3 and OsBSK4, and silencing OsBSK2, OsBSK3, and OsBSK4 reduced grain size
OsBSK2	Os10g0571300	LOC_Os10g42110	grain size	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 directly interacts with the BR receptor kinase OsBRI1, however, genetic experiments have demonstrated that OsBSK2 likely regulates grain size independently of the BR signaling pathway
OsBSK2	Os10g0571300	LOC_Os10g42110	grain size	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 can form a homodimer or heterodimers with OsBSK3 and OsBSK4, and silencing OsBSK2, OsBSK3, and OsBSK4 reduced grain size
OsBSK2	Os10g0571300	LOC_Os10g42110	brassinosteroid	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 MutMap-based gene mapping and transgenic experiments demonstrated that GLW10 encodes a putative brassinosteroid (BR)-signaling kinase, OsBSK2
OsBSK2	Os10g0571300	LOC_Os10g42110	BR	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 directly interacts with the BR receptor kinase OsBRI1, however, genetic experiments have demonstrated that OsBSK2 likely regulates grain size independently of the BR signaling pathway
OsBSK2	Os10g0571300	LOC_Os10g42110	Brassinosteroid	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 MutMap-based gene mapping and transgenic experiments demonstrated that GLW10 encodes a putative brassinosteroid (BR)-signaling kinase, OsBSK2
OsBSK2	Os10g0571300	LOC_Os10g42110	BR signaling	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 directly interacts with the BR receptor kinase OsBRI1, however, genetic experiments have demonstrated that OsBSK2 likely regulates grain size independently of the BR signaling pathway
OsBSK2	Os10g0571300	LOC_Os10g42110	kinase	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 directly interacts with the BR receptor kinase OsBRI1, however, genetic experiments have demonstrated that OsBSK2 likely regulates grain size independently of the BR signaling pathway
OsBSK2	Os10g0571300	LOC_Os10g42110	plasma membrane	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 is a plasma membrane protein, and an N-myristoylation site is needed for both its membrane localization and functions
OsBSK2	Os10g0571300	LOC_Os10g42110	receptor kinase	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 directly interacts with the BR receptor kinase OsBRI1, however, genetic experiments have demonstrated that OsBSK2 likely regulates grain size independently of the BR signaling pathway
OsBSK2	Os10g0571300	LOC_Os10g42110	 BR 	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size in rice.	 OsBSK2 directly interacts with the BR receptor kinase OsBRI1, however, genetic experiments have demonstrated that OsBSK2 likely regulates grain size independently of the BR signaling pathway
OsBSK2	Os10g0571300	LOC_Os10g42110	grain	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 Finally, we determined that OsBSK2 is involved in a number of divergent traits in japonica relative to indica rice, including grain shape, tiller number, cold adaptation, and nitrogen-use efficiency
OsBSK2	Os10g0571300	LOC_Os10g42110	BR	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 OsBSK2(L13) in indica plays a greater role in BR signaling than OsBSK2(P13) in japonica by affecting the auto-binding and protein accumulation of OsBSK2
OsBSK2	Os10g0571300	LOC_Os10g42110	BR	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 Our study suggests that the natural variation in OsBSK2 plays a key role in the divergence of BR signaling, which underlies multiple divergent traits between japonica and indica
OsBSK2	Os10g0571300	LOC_Os10g42110	BR signaling	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 OsBSK2(L13) in indica plays a greater role in BR signaling than OsBSK2(P13) in japonica by affecting the auto-binding and protein accumulation of OsBSK2
OsBSK2	Os10g0571300	LOC_Os10g42110	BR signaling	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 Our study suggests that the natural variation in OsBSK2 plays a key role in the divergence of BR signaling, which underlies multiple divergent traits between japonica and indica
OsBSK2	Os10g0571300	LOC_Os10g42110	tiller	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 Finally, we determined that OsBSK2 is involved in a number of divergent traits in japonica relative to indica rice, including grain shape, tiller number, cold adaptation, and nitrogen-use efficiency
OsBSK2	Os10g0571300	LOC_Os10g42110	cold	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 Finally, we determined that OsBSK2 is involved in a number of divergent traits in japonica relative to indica rice, including grain shape, tiller number, cold adaptation, and nitrogen-use efficiency
OsBSK2	Os10g0571300	LOC_Os10g42110	 BR 	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 OsBSK2(L13) in indica plays a greater role in BR signaling than OsBSK2(P13) in japonica by affecting the auto-binding and protein accumulation of OsBSK2
OsBSK2	Os10g0571300	LOC_Os10g42110	 BR 	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 Our study suggests that the natural variation in OsBSK2 plays a key role in the divergence of BR signaling, which underlies multiple divergent traits between japonica and indica
OsBSK2	Os10g0571300	LOC_Os10g42110	grain shape	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 Finally, we determined that OsBSK2 is involved in a number of divergent traits in japonica relative to indica rice, including grain shape, tiller number, cold adaptation, and nitrogen-use efficiency
OsBSK2	Os10g0571300	LOC_Os10g42110	tiller number	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	 Finally, we determined that OsBSK2 is involved in a number of divergent traits in japonica relative to indica rice, including grain shape, tiller number, cold adaptation, and nitrogen-use efficiency
OsBSK3	Os04g0684200	LOC_Os04g58750	 BR 	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.
OsBSK3	Os04g0684200	LOC_Os04g58750	 BR 	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	Genetic studies revealed that OsBSK3 is a positive regulator of BR signaling in rice, while in vivo and in vitro assays demonstrated that OsBRI1 interacts directly with and phosphorylates OsBSK3
OsBSK3	Os04g0684200	LOC_Os04g58750	 BR 	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	Our results not only demonstrate that OsBSK3 plays a conserved role in regulating BR signaling in rice, but also provide insight into the molecular mechanism by which BSK family proteins are inhibited under basal conditions but switched on by the upstream receptor kinase BRI1
OsBSK3	Os04g0684200	LOC_Os04g58750	BR signaling	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.
OsBSK3	Os04g0684200	LOC_Os04g58750	BR signaling	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	Genetic studies revealed that OsBSK3 is a positive regulator of BR signaling in rice, while in vivo and in vitro assays demonstrated that OsBRI1 interacts directly with and phosphorylates OsBSK3
OsBSK3	Os04g0684200	LOC_Os04g58750	BR signaling	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	Our results not only demonstrate that OsBSK3 plays a conserved role in regulating BR signaling in rice, but also provide insight into the molecular mechanism by which BSK family proteins are inhibited under basal conditions but switched on by the upstream receptor kinase BRI1
OsBSK3	Os04g0684200	LOC_Os04g58750	Kinase	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.
OsBSK3	Os04g0684200	LOC_Os04g58750	Kinase	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	The TPR domain of OsBSK3, which interacts directly with the protein's kinase domain, serves as an autoinhibitory domain to prevent OsBSK3 from interacting with BSU1
OsBSK3	Os04g0684200	LOC_Os04g58750	Kinase	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	Phosphorylation of OsBSK3 by OsBRI1 disrupts the interaction between its TPR and kinase domains, thereby increasing the binding between OsBSK3's kinase domain and BSU1
OsBSK3	Os04g0684200	LOC_Os04g58750	Kinase	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	Our results not only demonstrate that OsBSK3 plays a conserved role in regulating BR signaling in rice, but also provide insight into the molecular mechanism by which BSK family proteins are inhibited under basal conditions but switched on by the upstream receptor kinase BRI1
OsBSK3	Os04g0684200	LOC_Os04g58750	receptor kinase	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	Our results not only demonstrate that OsBSK3 plays a conserved role in regulating BR signaling in rice, but also provide insight into the molecular mechanism by which BSK family proteins are inhibited under basal conditions but switched on by the upstream receptor kinase BRI1
OsBSK3	Os04g0684200	LOC_Os04g58750	grain	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.
OsBSK3	Os04g0684200	LOC_Os04g58750	grain	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 In addition, the genetic evidence showed OsBSK3 acts upstream of OsPPKL1 in regulating grain length and weight
OsBSK3	Os04g0684200	LOC_Os04g58750	grain length	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.
OsBSK3	Os04g0684200	LOC_Os04g58750	grain length	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 In addition, the genetic evidence showed OsBSK3 acts upstream of OsPPKL1 in regulating grain length and weight
OsBSK3	Os04g0684200	LOC_Os04g58750	BR	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 Contrary to the well-established BR signaling pathway in Arabidopsis, there are significant gaps in the rice BR signaling pathway, especially the regulation mechanism from OsBSK3 to OsPPKLs and OsGSKs
OsBSK3	Os04g0684200	LOC_Os04g58750	BR	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 In this study, we report how OsBSK3 knockout mutants confer shorter and lighter grains and exhibit a typical BR-insensitive phenotype, suggesting OsBSK3 plays a positive role in BR signaling without genetic redundancy with homologs
OsBSK3	Os04g0684200	LOC_Os04g58750	BR	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 Furthermore, OsBSK3 could physically interact with OsPPKL1 and OsGSK3, the downstream components in BR signaling, as a scaffold protein, and inhibit the phosphatase activity of OsPPKL1 on the dephosphorylation of OsGSK3
OsBSK3	Os04g0684200	LOC_Os04g58750	BR signaling	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 Contrary to the well-established BR signaling pathway in Arabidopsis, there are significant gaps in the rice BR signaling pathway, especially the regulation mechanism from OsBSK3 to OsPPKLs and OsGSKs
OsBSK3	Os04g0684200	LOC_Os04g58750	BR signaling	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 In this study, we report how OsBSK3 knockout mutants confer shorter and lighter grains and exhibit a typical BR-insensitive phenotype, suggesting OsBSK3 plays a positive role in BR signaling without genetic redundancy with homologs
OsBSK3	Os04g0684200	LOC_Os04g58750	BR signaling	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 Furthermore, OsBSK3 could physically interact with OsPPKL1 and OsGSK3, the downstream components in BR signaling, as a scaffold protein, and inhibit the phosphatase activity of OsPPKL1 on the dephosphorylation of OsGSK3
OsBSK3	Os04g0684200	LOC_Os04g58750	 BR 	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 Contrary to the well-established BR signaling pathway in Arabidopsis, there are significant gaps in the rice BR signaling pathway, especially the regulation mechanism from OsBSK3 to OsPPKLs and OsGSKs
OsBSK3	Os04g0684200	LOC_Os04g58750	 BR 	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 In this study, we report how OsBSK3 knockout mutants confer shorter and lighter grains and exhibit a typical BR-insensitive phenotype, suggesting OsBSK3 plays a positive role in BR signaling without genetic redundancy with homologs
OsBSK3	Os04g0684200	LOC_Os04g58750	 BR 	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 Furthermore, OsBSK3 could physically interact with OsPPKL1 and OsGSK3, the downstream components in BR signaling, as a scaffold protein, and inhibit the phosphatase activity of OsPPKL1 on the dephosphorylation of OsGSK3
OsBSK3	Os04g0684200	LOC_Os04g58750	phosphatase	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.
OsBSK3	Os04g0684200	LOC_Os04g58750	phosphatase	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the Phosphatase Activity of OsPPKL1.	 Furthermore, OsBSK3 could physically interact with OsPPKL1 and OsGSK3, the downstream components in BR signaling, as a scaffold protein, and inhibit the phosphatase activity of OsPPKL1 on the dephosphorylation of OsGSK3
OsBT	Os01g0908200	LOC_Os01g68020	nitrogen	Members of BTB gene family regulate negatively nitrate uptake and nitrogen use efficiency in Arabidopsis thaliana and Oryza sativa.	Similar to Arabidopsis, we found that mutation of the BT1/BT2 ortholog gene in rice OsBT increased NUE by 20% as compared to wild-type rice plants under low nitrogen conditions
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	grain	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	The osbt1 mutant showed a white-core endosperm and a significantly lower grain weight than the wild-type
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	development	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	The formation and development of compound starch granules in osbt1 was obviously defective: the amyloplast was disintegrated at early developmental stages and the starch granules were disperse and not compound in the endosperm cells in the centre region of osbt1 seeds
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	starch	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	starch	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	The formation and development of compound starch granules in osbt1 was obviously defective: the amyloplast was disintegrated at early developmental stages and the starch granules were disperse and not compound in the endosperm cells in the centre region of osbt1 seeds
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	starch	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	Furthermore, the expression of starch synthesis related genes was also altered in the osbt1 mutant
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	starch	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	These findings indicate that OsBT1 plays an important role in starch synthesis and the formation of compound starch granules
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	map-based cloning	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	Map-based cloning of OsBT1 indicated that it encodes a putatively ADP-glucose transporter
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	endosperm	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	The osbt1 mutant showed a white-core endosperm and a significantly lower grain weight than the wild-type
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	endosperm	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	The formation and development of compound starch granules in osbt1 was obviously defective: the amyloplast was disintegrated at early developmental stages and the starch granules were disperse and not compound in the endosperm cells in the centre region of osbt1 seeds
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	transporter	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	transporter	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	Map-based cloning of OsBT1 indicated that it encodes a putatively ADP-glucose transporter
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	grain weight	OsBT1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	The osbt1 mutant showed a white-core endosperm and a significantly lower grain weight than the wild-type
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	seed	Rice OsBT1 regulates seed dormancy through the glycometabolism pathway.	Rice OsBT1 regulates seed dormancy through the glycometabolism pathway.
OsBT1-1|OsBT1	Os02g0202400	LOC_Os02g10800	dormancy	Rice OsBT1 regulates seed dormancy through the glycometabolism pathway.	Rice OsBT1 regulates seed dormancy through the glycometabolism pathway.
OsBT1-3	Os06g0602700	LOC_Os06g40050	leaf	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	OsBT1-3 expression was high in the young leaves, decreased after the two-leaf stage, and was low in the sheath, and these findings are consistent with the recovery of a number of chloroplasts in the third leaf of sla mutant seedlings
OsBT1-3	Os06g0602700	LOC_Os06g40050	seedlings	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	OsBT1-3 expression was high in the young leaves, decreased after the two-leaf stage, and was low in the sheath, and these findings are consistent with the recovery of a number of chloroplasts in the third leaf of sla mutant seedlings
OsBT1-3	Os06g0602700	LOC_Os06g40050	seedling	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	Based on these findings, OsBT1-3 likely acts as a plastid nucleotide uniporter and is essential for chloroplast development in rice leaves at the young seedling stage
OsBT1-3	Os06g0602700	LOC_Os06g40050	chloroplast	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	The results also showed that OsBT1-3-yellow fluorescent protein (YFP) was targeted to the chloroplast, and a Western blot assay using a peptide-specific antibody indicated that OsBT1-3 localizes to the chloroplast envelope
OsBT1-3	Os06g0602700	LOC_Os06g40050	chloroplast	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	Based on these findings, OsBT1-3 likely acts as a plastid nucleotide uniporter and is essential for chloroplast development in rice leaves at the young seedling stage
OsBT1-3	Os06g0602700	LOC_Os06g40050	development	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	Based on these findings, OsBT1-3 likely acts as a plastid nucleotide uniporter and is essential for chloroplast development in rice leaves at the young seedling stage
OsBT1-3	Os06g0602700	LOC_Os06g40050	transporter	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	We also demonstrated that OsBT1-3 functions as a unidirectional transporter of adenine nucleotides
OsBT1-3	Os06g0602700	LOC_Os06g40050	chloroplast development	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	Based on these findings, OsBT1-3 likely acts as a plastid nucleotide uniporter and is essential for chloroplast development in rice leaves at the young seedling stage
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	temperature	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	The expression of Osj10gBTF3 was primarily constitutive and generally modulated by salt, high temperature and exogenous phytohormone stress
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	transcription factor	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	salt	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	The expression of Osj10gBTF3 was primarily constitutive and generally modulated by salt, high temperature and exogenous phytohormone stress
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	phytohormone	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	The expression of Osj10gBTF3 was primarily constitutive and generally modulated by salt, high temperature and exogenous phytohormone stress
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	pollen	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	growth	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	Our demonstration of the important role of Osj10gBTF3 in rice growth and development provides new insights showing that more complex regulatory functions are associated with BTF3 in plants
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	chloroplast	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Knockout of Osj10gBTF3 affects pollen and chloroplast development and significantly reduces the accumulation of fertility-related chloroplast protein OsPPR676
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	chloroplast	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Interestingly, the interaction between OsHSP82 and OsPPR676 is only found in the cytoplasm, while the interaction between Osj10gBTF3 and OsPPR676 also occurs inside the chloroplast
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	chloroplast	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Further investigation indicates that Osj10gBTF3 enters the chloroplast stroma possibly through the inner chloroplast membrane channel protein Tic110 and then recruits OsCpn60 for the folding or assembly of OsPPR676
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	chloroplast	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Our results reveal a chaperone role of Osj10gBTF3 in chloroplast import different from Hsp90 and provide a link between chloroplast transport and pollen development in rice
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	development	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Knockout of Osj10gBTF3 affects pollen and chloroplast development and significantly reduces the accumulation of fertility-related chloroplast protein OsPPR676
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	development	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Our results reveal a chaperone role of Osj10gBTF3 in chloroplast import different from Hsp90 and provide a link between chloroplast transport and pollen development in rice
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	pollen	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Knockout of Osj10gBTF3 affects pollen and chloroplast development and significantly reduces the accumulation of fertility-related chloroplast protein OsPPR676
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	pollen	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Our results reveal a chaperone role of Osj10gBTF3 in chloroplast import different from Hsp90 and provide a link between chloroplast transport and pollen development in rice
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	chloroplast development	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Knockout of Osj10gBTF3 affects pollen and chloroplast development and significantly reduces the accumulation of fertility-related chloroplast protein OsPPR676
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	pollen development	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Our results reveal a chaperone role of Osj10gBTF3 in chloroplast import different from Hsp90 and provide a link between chloroplast transport and pollen development in rice
OsBTF3|Osj10gBTF3	Os10g0483000	LOC_Os10g34180	stroma	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for Pollen Development in Rice	Further investigation indicates that Osj10gBTF3 enters the chloroplast stroma possibly through the inner chloroplast membrane channel protein Tic110 and then recruits OsCpn60 for the folding or assembly of OsPPR676
OsBURP16	Os10g0409400	LOC_Os10g26940	abiotic stress	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice	All these results suggested that overexpression of OsBURP16 caused pectin degradation and affected cell wall integrity as well as transpiration rate, which decreased tolerance to abiotic stresses
OsBURP16	Os10g0409400	LOC_Os10g26940	abiotic stress	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice
OsBURP16	Os10g0409400	LOC_Os10g26940	salinity	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice	Transcription of OsBURP16 is induced by cold, salinity and drought stresses, as well as by abscisic acid (ABA) treatment
OsBURP16	Os10g0409400	LOC_Os10g26940	salinity	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice	Analysis of plant survival rates, relative ion leakage rates, accumulation levels of H2 O2 and water loss rates of leaves showed that overexpression of OsBURP16 enhanced sensitivity to cold, salinity and drought stresses compared with controls
OsBURP16	Os10g0409400	LOC_Os10g26940	drought	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice	Transcription of OsBURP16 is induced by cold, salinity and drought stresses, as well as by abscisic acid (ABA) treatment
OsBURP16	Os10g0409400	LOC_Os10g26940	drought	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice	Analysis of plant survival rates, relative ion leakage rates, accumulation levels of H2 O2 and water loss rates of leaves showed that overexpression of OsBURP16 enhanced sensitivity to cold, salinity and drought stresses compared with controls
OsBURP16	Os10g0409400	LOC_Os10g26940	cell wall	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice	All these results suggested that overexpression of OsBURP16 caused pectin degradation and affected cell wall integrity as well as transpiration rate, which decreased tolerance to abiotic stresses
OsBURP16	Os10g0409400	LOC_Os10g26940	abiotic stress	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	OsBURP16 overexpression reduced pectin content and cell adhesion and increased abiotic stress sensitivity in rice
OsBURP16	Os10g0409400	LOC_Os10g26940	stress	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	OsBURP16 overexpression reduced pectin content and cell adhesion and increased abiotic stress sensitivity in rice
OsBURP16	Os10g0409400	LOC_Os10g26940	biotic stress	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	OsBURP16 overexpression reduced pectin content and cell adhesion and increased abiotic stress sensitivity in rice
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	transcription factor	Trans-acting factor designated OSBZ8 interacts with both typical abscisic acid responsive elements as well as abscisic acid responsive element-like sequences in the vegetative tissues of indica rice cultivars	The current communication shows a comparative analysis performed on the binding of rice nuclear proteins, together with the purified transcription factor OSBZ8, to the cis-elements in the promoters of Rab16A (Motif I/Motif II), Osem (Motif A-1/Motif B) and Em (4X ABRE/2X ABRC)
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	seedling	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	Treatment of the seedlings with NaCl was found to enhance the complex formation, suggesting the regulation of OSBZ8 gene at both transcriptional and post-translational steps
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	lamina	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	RESULTS: Northern analysis of total RNA from roots and lamina of salt-sensitive M-I-48 and salt-tolerant Nonabokra, when probed with the N-terminal unique region of OSBZ8 (OSBZ8p, without the highly conserved basic region), a transcript of 1
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	ABA	A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid	The accumulation of OSBZ8 mRNA was induced by treatment with ABA of imbibed mature rice embryos, of young plant tissues and of suspension-cultured cells
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	ABA	A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid	The accumulation of OSBZ8 mRNA in response to ABA preceded that of Osem and Rab16A mRNAs and was not inhibited by an inhibitor of protein synthesis, cycloheximide
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	ABA	A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid	These results strongly suggest that OSBZ8 might be involved in the regulation of transcription by ABA in rice
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	vegetative	Trans-acting factor designated OSBZ8 interacts with both typical abscisic acid responsive elements as well as abscisic acid responsive element-like sequences in the vegetative tissues of indica rice cultivars	Trans-acting factor designated OSBZ8 interacts with both typical abscisic acid responsive elements as well as abscisic acid responsive element-like sequences in the vegetative tissues of indica rice cultivars
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	transcription factor	Spermidine-mediated in vitro phosphorylation of transcriptional regulator OSBZ8 by SNF1-type serine/threonine protein kinase SAPK4 homolog in indica rice	In this report, we demonstrate that spermidine mediates in vitro phosphorylation of OSBZ8, a bZIP class of ABRE-binding transcription factor, by OSPDK
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	vegetative	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	Still, nothing is known about the expression of OSBZ8 at protein level in vegetative tissue of salt sensitive and salt tolerant rice plants
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	vegetative	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	Therefore, OSBZ8 was considered to play an important role in the regulation of transcription in the vegetative tissue of rice
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	vegetative	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	The aim of this study is to find out whether OSBZ8 has any role in regulating the NaCl-stress induced gene expression in vegetative tissue and whether the expression of OSBZ8 factor directly correlates with the stress tolerance of different varieties of indica type rice
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt tolerance	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	Comparative EMSA with different varieties of rice suggests a positive correlation with the expression pattern of OSBZ8 and salt tolerance in rice cultivars
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	Still, nothing is known about the expression of OSBZ8 at protein level in vegetative tissue of salt sensitive and salt tolerant rice plants
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	RESULTS: Northern analysis of total RNA from roots and lamina of salt-sensitive M-I-48 and salt-tolerant Nonabokra, when probed with the N-terminal unique region of OSBZ8 (OSBZ8p, without the highly conserved basic region), a transcript of 1
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	Comparative EMSA with different varieties of rice suggests a positive correlation with the expression pattern of OSBZ8 and salt tolerance in rice cultivars
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt	Trans-acting factor designated OSBZ8 interacts with both typical abscisic acid responsive elements as well as abscisic acid responsive element-like sequences in the vegetative tissues of indica rice cultivars	We also show here that the activation and binding of OSBZ8 to the upstream regions of salt-inducible genes depends on its phosphorylated state
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	root	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice	RESULTS: Northern analysis of total RNA from roots and lamina of salt-sensitive M-I-48 and salt-tolerant Nonabokra, when probed with the N-terminal unique region of OSBZ8 (OSBZ8p, without the highly conserved basic region), a transcript of 1
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salinity	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.	Expression analysis indicates that the OsBZ8 gene is highly induced in Nonabokra plants even in the absence of salt stress, whereas in IR64, the expression significantly increases only during salt stress
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.	Collectively these results indicate a significant difference in chromatin modifications between the rice varieties that regulates differential expression of OsBZ8 gene during salt stress
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt stress	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.	Expression analysis indicates that the OsBZ8 gene is highly induced in Nonabokra plants even in the absence of salt stress, whereas in IR64, the expression significantly increases only during salt stress
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salt stress	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.	Collectively these results indicate a significant difference in chromatin modifications between the rice varieties that regulates differential expression of OsBZ8 gene during salt stress
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	stress	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	stress	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.	Expression analysis indicates that the OsBZ8 gene is highly induced in Nonabokra plants even in the absence of salt stress, whereas in IR64, the expression significantly increases only during salt stress
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	stress	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.	Collectively these results indicate a significant difference in chromatin modifications between the rice varieties that regulates differential expression of OsBZ8 gene during salt stress
OSBZ8|OsbZIP05	Os01g0658900	LOC_Os01g46970	salinity stress	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.	Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties.
OsbZIP01|OsRE1	Os01g0174000	LOC_Os01g07880	transcription factor	OsRE1 interacts with OsRIP1 to regulate rice heading date by finely modulating Ehd1 expression	OsRE1 is a nucleus-localized bZIP transcription factor with a diurnal rhythmic expression pattern
OsbZIP01|OsRE1	Os01g0174000	LOC_Os01g07880	heading date	OsRE1 interacts with OsRIP1 to regulate rice heading date by finely modulating Ehd1 expression	OsRE1 interacts with OsRIP1 to regulate rice heading date by finely modulating Ehd1 expression
OsbZIP01|OsRE1	Os01g0174000	LOC_Os01g07880	heading date	OsRE1 interacts with OsRIP1 to regulate rice heading date by finely modulating Ehd1 expression	Our genetic data showed that OsRE1 and OsRIP1 may function upstream of Ehd1 in regulating heading date
OsbZIP01|OsRE1	Os01g0174000	LOC_Os01g07880	heading date	OsRE1 interacts with OsRIP1 to regulate rice heading date by finely modulating Ehd1 expression	Together, our results suggest that OsRE1 functions cooperatively with OsRIP1 to regulate heading date through finely modulating the expression of Ehd1
OsbZIP01|OsRE1	Os01g0174000	LOC_Os01g07880	heading date	OsRE1 interacts with OsRIP1 to regulate rice heading date by finely modulating Ehd1 expression	In addition, OsRE1 and OsRIP1 are two minor heading date regulators, which are more desirable for fine-tuning heading date to improve rice regional adaptability
OsbZIP01|OsRE1	Os01g0174000	LOC_Os01g07880	adaptability	OsRE1 interacts with OsRIP1 to regulate rice heading date by finely modulating Ehd1 expression	In addition, OsRE1 and OsRIP1 are two minor heading date regulators, which are more desirable for fine-tuning heading date to improve rice regional adaptability
OsbZIP14	Os02g0132500	LOC_Os02g03960	tiller	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.	 By knocking out the OsbZIP14 gene in the rice cultivar Zhonghua 11, we observed that the knockout mutant OsbZIP14 exhibited dwarfism with reduced tiller during the grain-filling stage
OsbZIP14	Os02g0132500	LOC_Os02g03960	stress	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.	 Our results suggested that OsbZIP14 acts as a key TF gene through the concerted action of OsbZIP58 and OsbZIP14 during rice filling under heat stress
OsbZIP14	Os02g0132500	LOC_Os02g03960	seed	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.	 Under high-temperature treatment, it was also demonstrated that in the OsbZIP14 mutant, the expression of the OsbZIP58 gene, a key regulator of rice seed storage protein (SSP) accumulation, was upregulated
OsbZIP14	Os02g0132500	LOC_Os02g03960	grain-filling	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.	 By knocking out the OsbZIP14 gene in the rice cultivar Zhonghua 11, we observed that the knockout mutant OsbZIP14 exhibited dwarfism with reduced tiller during the grain-filling stage
OsbZIP14	Os02g0132500	LOC_Os02g03960	heat stress	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.
OsbZIP14	Os02g0132500	LOC_Os02g03960	heat stress	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.	 Our results suggested that OsbZIP14 acts as a key TF gene through the concerted action of OsbZIP58 and OsbZIP14 during rice filling under heat stress
OsbZIP14	Os02g0132500	LOC_Os02g03960	Heat Stress	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.
OsbZIP14	Os02g0132500	LOC_Os02g03960	Heat Stress	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal OsbZIP14 Function in Rice in Response to Heat Stress.	 Our results suggested that OsbZIP14 acts as a key TF gene through the concerted action of OsbZIP58 and OsbZIP14 during rice filling under heat stress
OsbZIP16	Os02g0191600	LOC_Os02g09830	transcription factor	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	Here, we characterized the function of a rice bZIP transcription factor OsbZIP16 in drought stress
OsbZIP16	Os02g0191600	LOC_Os02g09830	transcription factor	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice
OsbZIP16	Os02g0191600	LOC_Os02g09830	tillering	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	At both the seedling and tillering stages, transgenic rice plants overexpressing OsbZIP16 exhibited significantly improved drought resistance, which was positively correlated with the observed expression levels of OsbZIP16
OsbZIP16	Os02g0191600	LOC_Os02g09830	drought	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	Here, we characterized the function of a rice bZIP transcription factor OsbZIP16 in drought stress
OsbZIP16	Os02g0191600	LOC_Os02g09830	drought	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	Expression of OsbZIP16 was dramatically induced under drought conditions
OsbZIP16	Os02g0191600	LOC_Os02g09830	drought	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	At both the seedling and tillering stages, transgenic rice plants overexpressing OsbZIP16 exhibited significantly improved drought resistance, which was positively correlated with the observed expression levels of OsbZIP16
OsbZIP16	Os02g0191600	LOC_Os02g09830	drought	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	Overall, our findings suggest that OsbZIP16 positively regulates drought resistance in rice
OsbZIP16	Os02g0191600	LOC_Os02g09830	drought	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice
OsbZIP16	Os02g0191600	LOC_Os02g09830	ABA	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	OsbZIP16 was shown to be induced by exogenous ABA treatment, while overexpression of OsbZIP16 was observed to make transgenic plants more sensitive to ABA than wild type plants were
OsbZIP16	Os02g0191600	LOC_Os02g09830	tiller	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	At both the seedling and tillering stages, transgenic rice plants overexpressing OsbZIP16 exhibited significantly improved drought resistance, which was positively correlated with the observed expression levels of OsbZIP16
OsbZIP16	Os02g0191600	LOC_Os02g09830	drought resistance	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	At both the seedling and tillering stages, transgenic rice plants overexpressing OsbZIP16 exhibited significantly improved drought resistance, which was positively correlated with the observed expression levels of OsbZIP16
OsbZIP16	Os02g0191600	LOC_Os02g09830	drought resistance	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	Overall, our findings suggest that OsbZIP16 positively regulates drought resistance in rice
OsbZIP16	Os02g0191600	LOC_Os02g09830	drought resistance	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice
OsbZIP16	Os02g0191600	LOC_Os02g09830	seedling	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice	At both the seedling and tillering stages, transgenic rice plants overexpressing OsbZIP16 exhibited significantly improved drought resistance, which was positively correlated with the observed expression levels of OsbZIP16
OsbZIP18	Os02g0203000	LOC_Os02g10860	nitrogen	Natural variation in the OsbZIP18 promoter contributes to branched-chain amino acid levels in rice	 We further demonstrated that OsbZIP18 is strongly induced by nitrogen (N) deficiency and that N starvation results in enhanced BCAA levels in an OsbZIP18-dependent manner
OsbZIP18	Os02g0203000	LOC_Os02g10860	transcription factor	OsbZIP18, a Positive Regulator of Serotonin Biosynthesis, Negatively Controls the UV-B Tolerance in Rice.	 Here, we identified the basic leucine zipper transcription factor OsbZIP18 as a positive regulator of serotonin biosynthesis in rice
OsbZIP18	Os02g0203000	LOC_Os02g10860	growth	OsbZIP18, a Positive Regulator of Serotonin Biosynthesis, Negatively Controls the UV-B Tolerance in Rice.	 Overexpression of OsbZIP18 strongly induced the levels of serotonin and its early precursors (tryptophan and tryptamine), resulting in stunted growth and dark-brown phenotypes
OsbZIP18	Os02g0203000	LOC_Os02g10860	serotonin biosynthesis	OsbZIP18, a Positive Regulator of Serotonin Biosynthesis, Negatively Controls the UV-B Tolerance in Rice	OsbZIP18, a Positive Regulator of Serotonin Biosynthesis, Negatively Controls the UV-B Tolerance in Rice
OsbZIP18	Os02g0203000	LOC_Os02g10860	UV-B tolerance	OsbZIP18, a Positive Regulator of Serotonin Biosynthesis, Negatively Controls the UV-B Tolerance in Rice	OsbZIP18, a Positive Regulator of Serotonin Biosynthesis, Negatively Controls the UV-B Tolerance in Rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Expression of OsbZIP23 is strongly induced by a wide spectrum of stresses, including drought, salt, abscisic acid (ABA), and polyethylene glycol treatments, while other stress-responsive genes of this family are slightly induced only by one or two of the stresses
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Transgenic rice overexpressing OsbZIP23 showed significantly improved tolerance to drought and high-salinity stresses and sensitivity to ABA
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	On the other hand, a null mutant of this gene showed significantly decreased sensitivity to a high concentration of ABA and decreased tolerance to high-salinity and drought stress, and this phenotype can be complemented by transforming the OsbZIP23 back into the mutant
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	We propose that OsbZIP23 is a major player of the bZIP family in rice for conferring ABA-dependent drought and salinity tolerance and has high potential usefulness in genetic improvement of stress tolerance
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought tolerance	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	The stress-related genes activated by OsbZIP46CA1 are largely different from those activated by the other rice ABF/AREB homologs (such as OsbZIP23), further implying the value of OsbZIP46CA1 in genetic engineering of drought tolerance
OsbZIP23	Os02g0766700	LOC_Os02g52780	transcription factor	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	OsbZIP23 is a member of the basic leucine zipper (bZIP) transcription factor family in rice (Oryza sativa)
OsbZIP23	Os02g0766700	LOC_Os02g52780	transcription factor	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsbZIP23	Os02g0766700	LOC_Os02g52780	ethylene	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	The stress-related genes activated by OsbZIP46CA1 are largely different from those activated by the other rice ABF/AREB homologs (such as OsbZIP23), further implying the value of OsbZIP46CA1 in genetic engineering of drought tolerance
OsbZIP23	Os02g0766700	LOC_Os02g52780	transcription factor	Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice	It has high sequence similarity to ABA-responsive element binding factor (ABF/AREB) transcription factors ABI5 and OsbZIP23, two transcriptional activators positively regulating stress tolerance in Arabidopsis (Arabidopsis thaliana) and rice, respectively
OsbZIP23	Os02g0766700	LOC_Os02g52780	 ABA 	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	On the other hand, a null mutant of this gene showed significantly decreased sensitivity to a high concentration of ABA and decreased tolerance to high-salinity and drought stress, and this phenotype can be complemented by transforming the OsbZIP23 back into the mutant
OsbZIP23	Os02g0766700	LOC_Os02g52780	salinity stress	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Transgenic rice overexpressing OsbZIP23 showed significantly improved tolerance to drought and high-salinity stresses and sensitivity to ABA
OsbZIP23	Os02g0766700	LOC_Os02g52780	salt	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Expression of OsbZIP23 is strongly induced by a wide spectrum of stresses, including drought, salt, abscisic acid (ABA), and polyethylene glycol treatments, while other stress-responsive genes of this family are slightly induced only by one or two of the stresses
OsbZIP23	Os02g0766700	LOC_Os02g52780	ethylene	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Expression of OsbZIP23 is strongly induced by a wide spectrum of stresses, including drought, salt, abscisic acid (ABA), and polyethylene glycol treatments, while other stress-responsive genes of this family are slightly induced only by one or two of the stresses
OsbZIP23	Os02g0766700	LOC_Os02g52780	salt	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsbZIP23	Os02g0766700	LOC_Os02g52780	abiotic stress	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Collectively, these results indicate that OsbZIP23 functions as a transcriptional regulator that can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought tolerance	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	salinity	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Transgenic rice overexpressing OsbZIP23 showed significantly improved tolerance to drought and high-salinity stresses and sensitivity to ABA
OsbZIP23	Os02g0766700	LOC_Os02g52780	salinity	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	On the other hand, a null mutant of this gene showed significantly decreased sensitivity to a high concentration of ABA and decreased tolerance to high-salinity and drought stress, and this phenotype can be complemented by transforming the OsbZIP23 back into the mutant
OsbZIP23	Os02g0766700	LOC_Os02g52780	salinity	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	We propose that OsbZIP23 is a major player of the bZIP family in rice for conferring ABA-dependent drought and salinity tolerance and has high potential usefulness in genetic improvement of stress tolerance
OsbZIP23	Os02g0766700	LOC_Os02g52780	salinity	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	leaf	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	The single-copy OsbZIP23 gene is expressed at relatively higher level in leaf tissues of drought-tolerant genotypes, and its abundance is more in reproductive stage
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	The overexpression of any of the two polymorphic forms (1083 bp and 1068 bp CDS) of OsbZIP23 improved drought tolerance and yield-related traits significantly by retaining higher content of cellular water, soluble sugar and proline; and exhibited decrease in membrane lipid peroxidation in comparison to RNAi lines and non-transgenic plants
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	Taken together, the present study concludes that the enhanced gene expression rather than natural polymorphism in coding sequence of OsbZIP23 is accountable for improved drought tolerance and yield performance in rice genotypes
OsbZIP23	Os02g0766700	LOC_Os02g52780	tolerance	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.
OsbZIP23	Os02g0766700	LOC_Os02g52780	tolerance	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	The overexpression of any of the two polymorphic forms (1083 bp and 1068 bp CDS) of OsbZIP23 improved drought tolerance and yield-related traits significantly by retaining higher content of cellular water, soluble sugar and proline; and exhibited decrease in membrane lipid peroxidation in comparison to RNAi lines and non-transgenic plants
OsbZIP23	Os02g0766700	LOC_Os02g52780	tolerance	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	Taken together, the present study concludes that the enhanced gene expression rather than natural polymorphism in coding sequence of OsbZIP23 is accountable for improved drought tolerance and yield performance in rice genotypes
OsbZIP23	Os02g0766700	LOC_Os02g52780	yield	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.
OsbZIP23	Os02g0766700	LOC_Os02g52780	yield	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	Taken together, the present study concludes that the enhanced gene expression rather than natural polymorphism in coding sequence of OsbZIP23 is accountable for improved drought tolerance and yield performance in rice genotypes
OsbZIP23	Os02g0766700	LOC_Os02g52780	 ABA 	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	The OE lines showed higher expression of target genes-OsRab16B, OsRab21 and OsLEA3-1 and increased ABA sensitivity; indicating that OsbZIP23 is a positive transcriptional-regulator of the ABA-signaling pathway
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought tolerance	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought tolerance	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	The overexpression of any of the two polymorphic forms (1083 bp and 1068 bp CDS) of OsbZIP23 improved drought tolerance and yield-related traits significantly by retaining higher content of cellular water, soluble sugar and proline; and exhibited decrease in membrane lipid peroxidation in comparison to RNAi lines and non-transgenic plants
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought tolerance	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	Taken together, the present study concludes that the enhanced gene expression rather than natural polymorphism in coding sequence of OsbZIP23 is accountable for improved drought tolerance and yield performance in rice genotypes
OsbZIP23	Os02g0766700	LOC_Os02g52780	reproductive	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	The single-copy OsbZIP23 gene is expressed at relatively higher level in leaf tissues of drought-tolerant genotypes, and its abundance is more in reproductive stage
OsbZIP23	Os02g0766700	LOC_Os02g52780	sugar	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	The overexpression of any of the two polymorphic forms (1083 bp and 1068 bp CDS) of OsbZIP23 improved drought tolerance and yield-related traits significantly by retaining higher content of cellular water, soluble sugar and proline; and exhibited decrease in membrane lipid peroxidation in comparison to RNAi lines and non-transgenic plants
OsbZIP23	Os02g0766700	LOC_Os02g52780	ABA	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	The OE lines showed higher expression of target genes-OsRab16B, OsRab21 and OsLEA3-1 and increased ABA sensitivity; indicating that OsbZIP23 is a positive transcriptional-regulator of the ABA-signaling pathway
OsbZIP23	Os02g0766700	LOC_Os02g52780	resistance	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	The OsbZIP23 transcription factor has been characterized for its essential role in drought resistance in rice, but the mechanism is unknown
OsbZIP23	Os02g0766700	LOC_Os02g52780	resistance	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Together, our results suggest that OsbZIP23 acts as a central regulator in ABA signaling and biosynthesis, and drought resistance in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	The OsbZIP23 transcription factor has been characterized for its essential role in drought resistance in rice, but the mechanism is unknown
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Next, we performed genome-wide identification of OsbZIP23 targets by immunoprecipitation sequencing (ChIP-seq) and RNA Sequencing (RNA-Seq) analyses in the OsbZIP23-overexpression, osbzip23 mutant, and wild-type rice under normal and drought stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Together, our results suggest that OsbZIP23 acts as a central regulator in ABA signaling and biosynthesis, and drought resistance in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	transcription factor	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	The OsbZIP23 transcription factor has been characterized for its essential role in drought resistance in rice, but the mechanism is unknown
OsbZIP23	Os02g0766700	LOC_Os02g52780	 ABA 	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Among these targets, we found that OsbZIP23 could positively regulate OsPP2C49, and overexpression of OsPP2C49 in rice resulted in significantly decreased sensitivity of the ABA response and rapid dehydration
OsbZIP23	Os02g0766700	LOC_Os02g52780	 ABA 	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Moreover, OsNCED4 (9-cis-epoxycarotenoid dioxygenase 4), a key gene in ABA biosynthesis, was also positively regulated by OsbZIP23
OsbZIP23	Os02g0766700	LOC_Os02g52780	 ABA 	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Together, our results suggest that OsbZIP23 acts as a central regulator in ABA signaling and biosynthesis, and drought resistance in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	stress	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Next, we performed genome-wide identification of OsbZIP23 targets by immunoprecipitation sequencing (ChIP-seq) and RNA Sequencing (RNA-Seq) analyses in the OsbZIP23-overexpression, osbzip23 mutant, and wild-type rice under normal and drought stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	stress	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	OsbZIP23 directly regulates a large number of reported genes that function in stress response, hormone signaling, and developmental processes
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought resistance	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	The OsbZIP23 transcription factor has been characterized for its essential role in drought resistance in rice, but the mechanism is unknown
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought resistance	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Together, our results suggest that OsbZIP23 acts as a central regulator in ABA signaling and biosynthesis, and drought resistance in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	ABA	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Among these targets, we found that OsbZIP23 could positively regulate OsPP2C49, and overexpression of OsPP2C49 in rice resulted in significantly decreased sensitivity of the ABA response and rapid dehydration
OsbZIP23	Os02g0766700	LOC_Os02g52780	ABA	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Moreover, OsNCED4 (9-cis-epoxycarotenoid dioxygenase 4), a key gene in ABA biosynthesis, was also positively regulated by OsbZIP23
OsbZIP23	Os02g0766700	LOC_Os02g52780	ABA	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Together, our results suggest that OsbZIP23 acts as a central regulator in ABA signaling and biosynthesis, and drought resistance in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought stress	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Next, we performed genome-wide identification of OsbZIP23 targets by immunoprecipitation sequencing (ChIP-seq) and RNA Sequencing (RNA-Seq) analyses in the OsbZIP23-overexpression, osbzip23 mutant, and wild-type rice under normal and drought stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought stress 	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Next, we performed genome-wide identification of OsbZIP23 targets by immunoprecipitation sequencing (ChIP-seq) and RNA Sequencing (RNA-Seq) analyses in the OsbZIP23-overexpression, osbzip23 mutant, and wild-type rice under normal and drought stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	Kinase	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	A homolog of SnRK2 protein kinase SAPK2 was found to interact with and phosphorylate OsbZIP23 for its transcriptional activation
OsbZIP23	Os02g0766700	LOC_Os02g52780	stress response	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	OsbZIP23 directly regulates a large number of reported genes that function in stress response, hormone signaling, and developmental processes
OsbZIP23	Os02g0766700	LOC_Os02g52780	protein kinase	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	A homolog of SnRK2 protein kinase SAPK2 was found to interact with and phosphorylate OsbZIP23 for its transcriptional activation
OsbZIP23	Os02g0766700	LOC_Os02g52780	ABA biosynthesis	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Moreover, OsNCED4 (9-cis-epoxycarotenoid dioxygenase 4), a key gene in ABA biosynthesis, was also positively regulated by OsbZIP23
OsbZIP23	Os02g0766700	LOC_Os02g52780	transcription factor	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.
OsbZIP23	Os02g0766700	LOC_Os02g52780	transcription factor	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	 Here, we report an interplay between histone H3K4me3 modification and transcription factor OsbZIP23 in the regulation of a dehydrin gene cluster under drought stress conditions in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	 Here, we report an interplay between histone H3K4me3 modification and transcription factor OsbZIP23 in the regulation of a dehydrin gene cluster under drought stress conditions in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	 Conversely, the H3K4me3 modification and dehydrin gene expression levels were down-regulated in the osbzip23 mutant under drought stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	stress	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	 Here, we report an interplay between histone H3K4me3 modification and transcription factor OsbZIP23 in the regulation of a dehydrin gene cluster under drought stress conditions in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	stress	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	 Conversely, the H3K4me3 modification and dehydrin gene expression levels were down-regulated in the osbzip23 mutant under drought stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought stress	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	 Here, we report an interplay between histone H3K4me3 modification and transcription factor OsbZIP23 in the regulation of a dehydrin gene cluster under drought stress conditions in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought stress	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	 Conversely, the H3K4me3 modification and dehydrin gene expression levels were down-regulated in the osbzip23 mutant under drought stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought stress 	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	 Here, we report an interplay between histone H3K4me3 modification and transcription factor OsbZIP23 in the regulation of a dehydrin gene cluster under drought stress conditions in rice
OsbZIP23	Os02g0766700	LOC_Os02g52780	drought stress 	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	 Conversely, the H3K4me3 modification and dehydrin gene expression levels were down-regulated in the osbzip23 mutant under drought stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	transcription factor	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 The transcription factor OsbZIP23 was demonstrated to regulate the UGT2 expression under stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	stress	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 The transcription factor OsbZIP23 was demonstrated to regulate the UGT2 expression under stress conditions
OsbZIP23	Os02g0766700	LOC_Os02g52780	ER stress	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 The transcription factor OsbZIP23 was demonstrated to regulate the UGT2 expression under stress conditions
OsbZIP28|OsbZIP1	Os03g0318600	LOC_Os03g20310	root	Identification of a novel rice bZIP-type transcription factor gene,OsbZIP1, involved in response to infection ofMagnaporthe grisea	Northern blotting analysis showed thatOsbZIP1 was constitutively expressed in the roots and strongly induced in rice leaves in response to infection with both the compatible race MS220 and incompatible race 131 ofM
OsbZIP28|OsbZIP1	Os03g0318600	LOC_Os03g20310	salicylic acid	Identification of a novel rice bZIP-type transcription factor gene,OsbZIP1, involved in response to infection ofMagnaporthe grisea	Furthermore, OsbZIP1 expression could be rapidly induced in leaves treated with salicylic acid, jasmonic acid, and abscisic acid
OsbZIP28|OsbZIP1	Os03g0318600	LOC_Os03g20310	salicylic acid	Identification of a novel rice bZIP-type transcription factor gene,OsbZIP1, involved in response to infection ofMagnaporthe grisea	These results indicate that the OsbZIP1 may function as a transcription factor and may play a role in salicylic acid-dependent signal transduction pathway for defense of rice against pathogens
OsbZIP28|OsbZIP1	Os03g0318600	LOC_Os03g20310	jasmonic	Identification of a novel rice bZIP-type transcription factor gene,OsbZIP1, involved in response to infection ofMagnaporthe grisea	Furthermore, OsbZIP1 expression could be rapidly induced in leaves treated with salicylic acid, jasmonic acid, and abscisic acid
OsbZIP28|OsbZIP1	Os03g0318600	LOC_Os03g20310	jasmonic acid	Identification of a novel rice bZIP-type transcription factor gene,OsbZIP1, involved in response to infection ofMagnaporthe grisea	Furthermore, OsbZIP1 expression could be rapidly induced in leaves treated with salicylic acid, jasmonic acid, and abscisic acid
OsbZIP28|OsbZIP1	Os03g0318600	LOC_Os03g20310	transcription factor	Identification of a novel rice bZIP-type transcription factor gene,OsbZIP1, involved in response to infection ofMagnaporthe grisea	These results indicate that the OsbZIP1 may function as a transcription factor and may play a role in salicylic acid-dependent signal transduction pathway for defense of rice against pathogens
OsbZIP28|OsbZIP1	Os03g0318600	LOC_Os03g20310	transcription factor	Identification of a novel rice bZIP-type transcription factor gene,OsbZIP1, involved in response to infection ofMagnaporthe grisea	Identification of a novel rice bZIP-type transcription factor gene,OsbZIP1, involved in response to infection ofMagnaporthe grisea
OsbZIP28|OsbZIP1	Os03g0318600	LOC_Os03g20310	defense	Identification of a novel rice bZIP-type transcription factor gene,OsbZIP1, involved in response to infection ofMagnaporthe grisea	These results indicate that the OsbZIP1 may function as a transcription factor and may play a role in salicylic acid-dependent signal transduction pathway for defense of rice against pathogens
OsbZIP39	Os05g0411300	LOC_Os05g34050	transcription factor	A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response	In this study, three rice basic leucine zipper (bZIP) transcription factors (OsbZIP39, OsbZIP50 and OsbZIP60) containing putative transmembrane domains (TMDs) in their C-terminal regions were identified as candidates of the ER stress sensor transducer
OsbZIP39	Os05g0411300	LOC_Os05g34050	transcription factor	A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response	A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	The expression of OsbZIP42 was induced by ABA treatment, although it was not induced by drought and salt stresses
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	These results suggest that OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance depending on its activation, which is followed by an additional ABA-dependent modification
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	We propose that OsbZIP42 is an important player in rice for conferring ABA-dependent drought tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	salt	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	The expression of OsbZIP42 was induced by ABA treatment, although it was not induced by drought and salt stresses
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	tolerance	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	tolerance	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	tolerance	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	These results suggest that OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance depending on its activation, which is followed by an additional ABA-dependent modification
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	tolerance	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	We propose that OsbZIP42 is an important player in rice for conferring ABA-dependent drought tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	ABA	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	ABA	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	ABA	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	The expression of OsbZIP42 was induced by ABA treatment, although it was not induced by drought and salt stresses
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	ABA	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	These results suggest that OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance depending on its activation, which is followed by an additional ABA-dependent modification
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought tolerance	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought tolerance	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	We propose that OsbZIP42 is an important player in rice for conferring ABA-dependent drought tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	salt stress	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	The expression of OsbZIP42 was induced by ABA treatment, although it was not induced by drought and salt stresses
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	stress	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	stress	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	These results suggest that OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance depending on its activation, which is followed by an additional ABA-dependent modification
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	ABA	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	ABA	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	ABA	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	The expression of OsbZIP42 was induced by ABA treatment, although it was not induced by drought and salt stresses
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	ABA	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	Transgenic rice overexpressing OsbZIP42 (OsbZIP42-OX) exhibited a rapidly elevated expression of the ABA-responsive LEA3 and Rab16 genes and was hypersensitive to ABA
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	ABA	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	These results suggest that OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance depending on its activation, which is followed by an additional ABA-dependent modification
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	Kinase	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	The activation of OsbZIP42 depends on stress-/ABA-activated protein kinase 4 (SAPK4) and an additional ABA-dependent modification of OsbZIP42
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	protein kinase	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	The activation of OsbZIP42 depends on stress-/ABA-activated protein kinase 4 (SAPK4) and an additional ABA-dependent modification of OsbZIP42
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought stress	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought stress	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	These results suggest that OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance depending on its activation, which is followed by an additional ABA-dependent modification
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought stress	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	drought stress	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	These results suggest that OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance depending on its activation, which is followed by an additional ABA-dependent modification
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	stress tolerance	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance
OsbZIP42|HBF1	Os05g0489700	LOC_Os05g41070	stress tolerance	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	These results suggest that OsbZIP42 is a positive regulator of ABA signaling and drought stress tolerance depending on its activation, which is followed by an additional ABA-dependent modification
OsbZIP47	Os06g0265400	LOC_Os06g15480	transcription factor	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	 Protein interaction assays showed OsbZIP47 partnerships with RICE HOMEOBOX1 (OSH1), RICE FLORICULA/LEAFY (RFL), and OsMADS1 transcription factors
OsbZIP47	Os06g0265400	LOC_Os06g15480	growth	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.
OsbZIP47	Os06g0265400	LOC_Os06g15480	development	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	 We characterized the role of rice OsbZIP47 in vegetative and reproductive development
OsbZIP47	Os06g0265400	LOC_Os06g15480	development	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	 Taken together, we provide insights on OsbZIP47 roles in SAM development, inflorescence branching, and floret development
OsbZIP47	Os06g0265400	LOC_Os06g15480	vegetative	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	 We characterized the role of rice OsbZIP47 in vegetative and reproductive development
OsbZIP47	Os06g0265400	LOC_Os06g15480	meristem	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.
OsbZIP47	Os06g0265400	LOC_Os06g15480	inflorescence	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	 Taken together, we provide insights on OsbZIP47 roles in SAM development, inflorescence branching, and floret development
OsbZIP47	Os06g0265400	LOC_Os06g15480	reproductive	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	 We characterized the role of rice OsbZIP47 in vegetative and reproductive development
OsbZIP47	Os06g0265400	LOC_Os06g15480	plant growth	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.
OsbZIP47	Os06g0265400	LOC_Os06g15480	reproductive development	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	 We characterized the role of rice OsbZIP47 in vegetative and reproductive development
OsbZIP48	Os06g0601500	LOC_Os06g39960	seedlings	OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.	Moreover, OsbZIP48 protein does not degrade in dark grown rice and Athy5 seedlings complemented with OsbZIP48, which is in striking contrast to AtHY5
OsbZIP48	Os06g0601500	LOC_Os06g39960	seedling	OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.	The RNAi lines and T-DNA insertional mutant of OsbZIP48 showed seedling lethal phenotype despite the fact that roots were more proliferative during early stages of development
OsbZIP48	Os06g0601500	LOC_Os06g39960	development	OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.	The RNAi lines and T-DNA insertional mutant of OsbZIP48 showed seedling lethal phenotype despite the fact that roots were more proliferative during early stages of development
OsbZIP48	Os06g0601500	LOC_Os06g39960	height	OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.	In comparison to AtHY5, which does not cause any change in hypocotyl length when over-expressed in Arabidopsis, the over-expression of full-length OsbZIP48 in rice transgenics reduced the plant height considerably
OsbZIP48	Os06g0601500	LOC_Os06g39960	plant height	OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.	In comparison to AtHY5, which does not cause any change in hypocotyl length when over-expressed in Arabidopsis, the over-expression of full-length OsbZIP48 in rice transgenics reduced the plant height considerably
OsbZIP48	Os06g0601500	LOC_Os06g39960	zinc	Rice F-bZIP transcription factors regulate the zinc deficiency response	OsbZIP48 and OsbZIP50, but not OsbZIP49, complement the zinc deficiency-hypersensitive Arabidopsis bzip19bzip23 double mutant
OsbZIP48	Os06g0601500	LOC_Os06g39960	zinc	Rice F-bZIP transcription factors regulate the zinc deficiency response	Our results suggest that regulation of the zinc deficiency response in rice is conserved, with OsbZIP48 being a functional homolog of AtbZIP19 and AtbZIP23
OsbZIP49	Os06g0614100	LOC_Os06g41100	transcription factor	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.
OsbZIP49	Os06g0614100	LOC_Os06g41100	transcription factor	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Taken together, the present results reveal the role transcription factor OsbZIP49 plays in determining plant architecture, primarily due to its influence on local auxin homeostasis
OsbZIP49	Os06g0614100	LOC_Os06g41100	gravitropic response	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Follow-up studies indicated that the effects of OsbZIP49 on tiller angles are mediated through changes in shoot gravitropic responses
OsbZIP49	Os06g0614100	LOC_Os06g41100	shoot	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Follow-up studies indicated that the effects of OsbZIP49 on tiller angles are mediated through changes in shoot gravitropic responses
OsbZIP49	Os06g0614100	LOC_Os06g41100	shoot	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Knockout of OsbZIP49 led to reduced expression of both OsGH3-2 and OsGH3-13 within the shoot base, and increased accumulation of IAA and increased OsIAA20 expression levels were observed in transformants following gravistimulation
OsbZIP49	Os06g0614100	LOC_Os06g41100	auxin	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Taken together, the present results reveal the role transcription factor OsbZIP49 plays in determining plant architecture, primarily due to its influence on local auxin homeostasis
OsbZIP49	Os06g0614100	LOC_Os06g41100	tiller	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.
OsbZIP49	Os06g0614100	LOC_Os06g41100	tiller	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Follow-up studies indicated that the effects of OsbZIP49 on tiller angles are mediated through changes in shoot gravitropic responses
OsbZIP49	Os06g0614100	LOC_Os06g41100	architecture	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.
OsbZIP49	Os06g0614100	LOC_Os06g41100	architecture	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	In contrast, CRISPR/Cas9 mediated knockout of OsbZIP49 resulted in a compact architecture
OsbZIP49	Os06g0614100	LOC_Os06g41100	iaa	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Increased GH3-catalysed conjugation of IAA in rice transformants overexpressing OsbZIP49 resulted in the increased accumulation of IAA-Asp and IAA-Glu, and a reduction in local free auxin, tryptamine and IAA-Glc levels
OsbZIP49	Os06g0614100	LOC_Os06g41100	iaa	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Knockout of OsbZIP49 led to reduced expression of both OsGH3-2 and OsGH3-13 within the shoot base, and increased accumulation of IAA and increased OsIAA20 expression levels were observed in transformants following gravistimulation
OsbZIP49	Os06g0614100	LOC_Os06g41100	homeostasis	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Taken together, the present results reveal the role transcription factor OsbZIP49 plays in determining plant architecture, primarily due to its influence on local auxin homeostasis
OsbZIP49	Os06g0614100	LOC_Os06g41100	height	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Transgenic rice plants overexpressing OsbZIP49 displayed a tiller-spreading phenotype with reduced plant height and internode lengths
OsbZIP49	Os06g0614100	LOC_Os06g41100	plant height	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Transgenic rice plants overexpressing OsbZIP49 displayed a tiller-spreading phenotype with reduced plant height and internode lengths
OsbZIP49	Os06g0614100	LOC_Os06g41100	internode length	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Transgenic rice plants overexpressing OsbZIP49 displayed a tiller-spreading phenotype with reduced plant height and internode lengths
OsbZIP49	Os06g0614100	LOC_Os06g41100	plant architecture	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.
OsbZIP49	Os06g0614100	LOC_Os06g41100	plant architecture	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Taken together, the present results reveal the role transcription factor OsbZIP49 plays in determining plant architecture, primarily due to its influence on local auxin homeostasis
OsbZIP49	Os06g0614100	LOC_Os06g41100	IAA	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Increased GH3-catalysed conjugation of IAA in rice transformants overexpressing OsbZIP49 resulted in the increased accumulation of IAA-Asp and IAA-Glu, and a reduction in local free auxin, tryptamine and IAA-Glc levels
OsbZIP49	Os06g0614100	LOC_Os06g41100	IAA	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Knockout of OsbZIP49 led to reduced expression of both OsGH3-2 and OsGH3-13 within the shoot base, and increased accumulation of IAA and increased OsIAA20 expression levels were observed in transformants following gravistimulation
OsbZIP49	Os06g0614100	LOC_Os06g41100	tiller angle	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.
OsbZIP49	Os06g0614100	LOC_Os06g41100	tiller angle	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Follow-up studies indicated that the effects of OsbZIP49 on tiller angles are mediated through changes in shoot gravitropic responses
OsbZIP50|OsbZIP74	Os06g0622700	LOC_Os06g41770	transcription factor	Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses	Under normal conditions, OsbZIP74 mRNA encodes a basic leucine-zipper transcription factor with a putative transmembrane domain
OsbZIP50|OsbZIP74	Os06g0622700	LOC_Os06g41770	transcription factor	Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice	This study demonstrates that the Oryza sativa (rice) OsbZIP50 transcription factor, an orthologue of Arabidopsis AtbZIP60, is regulated by IRE1-mediated splicing of its RNA
OsbZIP50|OsbZIP74	Os06g0622700	LOC_Os06g41770	transcription factor	Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice	OsbZIP50 mRNA is spliced in a similar manner to HAC1 and XBP1 mRNAs; however, this splicing has very different effects on the translation products, a finding that shows the diversity of IRE1-related transcription factors in eukaryotes
OsbZIP50|OsbZIP74	Os06g0622700	LOC_Os06g41770	leaf	Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses	The activated form of OsbZIP74 has transcriptional activation activity in both yeast cells and Arabidopsis leaf protoplasts
OsbZIP50|OsbZIP74	Os06g0622700	LOC_Os06g41770	transcription factor	Multiple roles of the ER stress sensor IRE1 demonstrated by gene targeting in rice	Ribonuclease mediates the unconventional splicing of mRNA encoding the transcription factor AtbZIP60 in Arabidopsis, or OsbZIP50 in rice, and thereby transduces signals from stressed ER
OsbZIP50|OsbZIP74	Os06g0622700	LOC_Os06g41770	stem	Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses	When treating with ER stress-inducing agents such as tunicamycin and DTT, the conserved double stem-loop structures of OsbZIP74 mRNA are spliced out
OsbZIP50|OsbZIP74	Os06g0622700	LOC_Os06g41770	stem	Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses	We also demonstrate that the unconventional splicing of OsbZIP74 mRNA is associated with heat stress and salicylic acid, which is an important plant hormone in systemic acquired resistance against pathogen or parasite
OsbZIP50|OsbZIP74	Os06g0622700	LOC_Os06g41770	salicylic acid	Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses	We also demonstrate that the unconventional splicing of OsbZIP74 mRNA is associated with heat stress and salicylic acid, which is an important plant hormone in systemic acquired resistance against pathogen or parasite
OsbZIP50|OsbZIP74	Os06g0622700	LOC_Os06g41770	zinc	Rice F-bZIP transcription factors regulate the zinc deficiency response	Ectopic expression of OsbZIP50 in Arabidopsis significantly increases plant zinc accumulation under control zinc supply, suggesting an altered Zn sensing in OsbZIP50
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	temperature	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	Expression of the OsbZIP52 gene was strongly induced by low temperature (4 degrees C) but not by drought, PEG, salt, or ABA
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	panicle	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	OsbZIP52/RISBZ5 is a member of the basic leucine zipper (bZIP) transcription factor (TF) family in rice (Oryza sativa) isolated from rice (Zhonghua11) panicles
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	drought	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	Expression of the OsbZIP52 gene was strongly induced by low temperature (4 degrees C) but not by drought, PEG, salt, or ABA
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	drought	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	Rice plants overexpressing OsbZIP52 showed significantly increased sensitivity to cold and drought stress
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	drought	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	These results suggest that OsbZIP52/RISBZ5 could function as a negative regulator in cold and drought stress environments
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	drought	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	salt	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	Expression of the OsbZIP52 gene was strongly induced by low temperature (4 degrees C) but not by drought, PEG, salt, or ABA
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	transcription factor	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	OsbZIP52/RISBZ5 is a member of the basic leucine zipper (bZIP) transcription factor (TF) family in rice (Oryza sativa) isolated from rice (Zhonghua11) panicles
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	transcription factor	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	drought	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	These results suggest that OsbZIP52/RISBZ5 could function as a negative regulator in cold and drought stress environments
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	drought	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice
OsbZIP52|RISBZ5	Os06g0662200	LOC_Os06g45140	abiotic stress	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	Real-time PCR analysis revealed that some abiotic stress-related genes, such as OsLEA3, OsTPP1, Rab25, gp1 precursor, beta-gal, LOC_Os05g11910 and LOC_Os05g39250, were down-regulated in OsbZIP52 overexpression lines
OsbZIP60	Os07g0644100	LOC_Os07g44950	transcription factor	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding	Finally, yeast two-hybrid screening results showed that Bphi008a is able to interact with a b-ZIP transcription factor (OsbZIP60) and a RNA polymerase polypeptide (SDRP)
OsbZIP60	Os07g0644100	LOC_Os07g44950	transcription factor	OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice.	 Here, a genome-wide association study (GWAS) reveals that the transcription factor OsbZIP60 is a vital regulator of rice grain chalkiness
OsbZIP60	Os07g0644100	LOC_Os07g44950	grain	OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice.	 Here, a genome-wide association study (GWAS) reveals that the transcription factor OsbZIP60 is a vital regulator of rice grain chalkiness
OsbZIP60	Os07g0644100	LOC_Os07g44950	grain	OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice.	 Genetic analysis demonstrates that knockout of OsbZIP60 results in extremely high grain chalkiness and aberrant structure of storage substances
OsbZIP60	Os07g0644100	LOC_Os07g44950	grain	OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice.	 Furthermore, OsbZIP60 is found to activate the expression of key genes related to grain chalkiness, such as GPA3, FSE1, FLO7, Chalk5, OsNF-YB1, and OsPK2, whose expression is significantly suppressed in osbzip60 and overexpression lines of OsbZIP50, OsBiP1, OsBiP2, and OsBiP3
OsbZIP60	Os07g0644100	LOC_Os07g44950	grain	OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice.	 Our study provides novel insights into the function of OsbZIP60 and the role of the UPR pathway in the formation of grain chalkiness in rice
OsbZIP60	Os07g0644100	LOC_Os07g44950	chalkiness	OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice.	 Here, a genome-wide association study (GWAS) reveals that the transcription factor OsbZIP60 is a vital regulator of rice grain chalkiness
OsbZIP60	Os07g0644100	LOC_Os07g44950	chalkiness	OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice.	 Genetic analysis demonstrates that knockout of OsbZIP60 results in extremely high grain chalkiness and aberrant structure of storage substances
OsbZIP60	Os07g0644100	LOC_Os07g44950	chalkiness	OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice.	 Our study provides novel insights into the function of OsbZIP60 and the role of the UPR pathway in the formation of grain chalkiness in rice
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	transcription factor	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	oxidative stress	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	Overexpression of OsbZIP62-VP64 (OsbZIP62V) enhanced the drought tolerance and oxidative stress tolerance of transgenic rice, while osbzip62 mutants exhibited the opposite phenotype
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	drought	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	drought	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	Overexpression of OsbZIP62-VP64 (OsbZIP62V) enhanced the drought tolerance and oxidative stress tolerance of transgenic rice, while osbzip62 mutants exhibited the opposite phenotype
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	drought	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	OsbZIP62 is involved in ABA signalling pathways and positively regulates rice drought tolerance by regulating the expression of genes associated with stress, and this gene could be used for the genetic modification of crops with improved drought tolerance
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	tolerance	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	tolerance	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	Overexpression of OsbZIP62-VP64 (OsbZIP62V) enhanced the drought tolerance and oxidative stress tolerance of transgenic rice, while osbzip62 mutants exhibited the opposite phenotype
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	tolerance	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	OsbZIP62 is involved in ABA signalling pathways and positively regulates rice drought tolerance by regulating the expression of genes associated with stress, and this gene could be used for the genetic modification of crops with improved drought tolerance
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	oxidative	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	oxidative	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	Overexpression of OsbZIP62-VP64 (OsbZIP62V) enhanced the drought tolerance and oxidative stress tolerance of transgenic rice, while osbzip62 mutants exhibited the opposite phenotype
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	ABA	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	OsbZIP62 is involved in ABA signalling pathways and positively regulates rice drought tolerance by regulating the expression of genes associated with stress, and this gene could be used for the genetic modification of crops with improved drought tolerance
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	drought tolerance	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	Overexpression of OsbZIP62-VP64 (OsbZIP62V) enhanced the drought tolerance and oxidative stress tolerance of transgenic rice, while osbzip62 mutants exhibited the opposite phenotype
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	drought tolerance	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	OsbZIP62 is involved in ABA signalling pathways and positively regulates rice drought tolerance by regulating the expression of genes associated with stress, and this gene could be used for the genetic modification of crops with improved drought tolerance
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	stress	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	Overexpression of OsbZIP62-VP64 (OsbZIP62V) enhanced the drought tolerance and oxidative stress tolerance of transgenic rice, while osbzip62 mutants exhibited the opposite phenotype
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	abscisic acid	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	OsbZIP62 expression was induced by drought, hydrogen peroxide, and abscisic acid (ABA) treatment
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	ABA	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	OsbZIP62 is involved in ABA signalling pathways and positively regulates rice drought tolerance by regulating the expression of genes associated with stress, and this gene could be used for the genetic modification of crops with improved drought tolerance
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	protein kinase	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	Moreover, OsbZIP62 could bind to the promoters of several putative target genes and could interact with stress/ABA-activated protein kinases (SAPKs)
OsbZIP62|OsFD7	Os07g0686100	LOC_Os07g48660	stress tolerance	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	Overexpression of OsbZIP62-VP64 (OsbZIP62V) enhanced the drought tolerance and oxidative stress tolerance of transgenic rice, while osbzip62 mutants exhibited the opposite phenotype
OsbZIP71	Os09g0306400	LOC_Os09g13570	ABA	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	Expression of OsbZIP71 was strongly induced by drought, polyethylene glycol (PEG), and ABA treatments, but repressed by salt treatment
OsbZIP71	Os09g0306400	LOC_Os09g13570	salinity	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice
OsbZIP71	Os09g0306400	LOC_Os09g13570	ethylene	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	Expression of OsbZIP71 was strongly induced by drought, polyethylene glycol (PEG), and ABA treatments, but repressed by salt treatment
OsbZIP71	Os09g0306400	LOC_Os09g13570	drought	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	Expression of OsbZIP71 was strongly induced by drought, polyethylene glycol (PEG), and ABA treatments, but repressed by salt treatment
OsbZIP71	Os09g0306400	LOC_Os09g13570	drought	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	OsbZIP71 overexpressing (p35S::OsbZIP71) rice significantly improved tolerance to drought, salt and PEG osmotic stresses
OsbZIP71	Os09g0306400	LOC_Os09g13570	drought	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	These results suggest that OsbZIP71 may play an important role in ABA-mediated drought and salt tolerance in rice
OsbZIP71	Os09g0306400	LOC_Os09g13570	drought	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice
OsbZIP71	Os09g0306400	LOC_Os09g13570	drought tolerance	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice
OsbZIP71	Os09g0306400	LOC_Os09g13570	salt tolerance	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	These results suggest that OsbZIP71 may play an important role in ABA-mediated drought and salt tolerance in rice
OsbZIP71	Os09g0306400	LOC_Os09g13570	salt	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	Expression of OsbZIP71 was strongly induced by drought, polyethylene glycol (PEG), and ABA treatments, but repressed by salt treatment
OsbZIP71	Os09g0306400	LOC_Os09g13570	salt	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	OsbZIP71 overexpressing (p35S::OsbZIP71) rice significantly improved tolerance to drought, salt and PEG osmotic stresses
OsbZIP71	Os09g0306400	LOC_Os09g13570	salt	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	Inducible expression (RD29A::OsbZIP71) lines were significantly improved their tolerance to PEG osmotic stresses, but hypersensitivity to salt, and insensitivity to ABA
OsbZIP71	Os09g0306400	LOC_Os09g13570	salt	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	These results suggest that OsbZIP71 may play an important role in ABA-mediated drought and salt tolerance in rice
OsbZIP71	Os09g0306400	LOC_Os09g13570	transcription factor	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	drought resistance	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice	These results suggest that OsbZIP72 plays a positive role in drought resistance through ABA signaling, and is potential useful for engineering drought tolerant rice
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	drought	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice	Transgenic rice overexpressing OsbZIP72 showed a hypersensitivity to ABA, elevated levels of expression of ABA response gene such as LEAs, and an enhanced ability of drought tolerance
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	drought	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice	These results suggest that OsbZIP72 plays a positive role in drought resistance through ABA signaling, and is potential useful for engineering drought tolerant rice
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	drought	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	 ABA 	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice	Transgenic rice overexpressing OsbZIP72 showed a hypersensitivity to ABA, elevated levels of expression of ABA response gene such as LEAs, and an enhanced ability of drought tolerance
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	 ABA 	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice	These results suggest that OsbZIP72 plays a positive role in drought resistance through ABA signaling, and is potential useful for engineering drought tolerant rice
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	 ABA 	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	drought tolerance	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice	Transgenic rice overexpressing OsbZIP72 showed a hypersensitivity to ABA, elevated levels of expression of ABA response gene such as LEAs, and an enhanced ability of drought tolerance
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	drought tolerance	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	abscisic acid	The coordination of OsbZIP72 and OsMYBS2 with reverse roles regulates the transcription of OsPsbS1 in rice	 OsbZIP72 can be activated by SAPK1, and acts depending on the abscisic acid (ABA) signalling pathway
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	seed germination	bZIP72 promotes submerged rice seed germination and coleoptile elongation by activating ADH1	bZIP72 promotes submerged rice seed germination and coleoptile elongation by activating ADH1
OsbZIP72|OsABF4	Os09g0456200	LOC_Os09g28310	coleoptile elongation	bZIP72 promotes submerged rice seed germination and coleoptile elongation by activating ADH1	bZIP72 promotes submerged rice seed germination and coleoptile elongation by activating ADH1
OsbZIP76	Os09g0520400	LOC_Os09g34880	transcription factor	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	As a putative  transcription factor, OsbZIP76 alone lacked transcriptional activation activity;  however, it interacted with the nuclear factor Y (NF-Y) family transcription factors OsNF-YB9 and OsNF-YB1 in yeast and in planta
OsbZIP76	Os09g0520400	LOC_Os09g34880	development	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	Genes involved in endosperm development or starch biosynthesis were prematurely activated in the osbzip76 caryopsis
OsbZIP76	Os09g0520400	LOC_Os09g34880	development	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	In summary, OsbZIP76 is an endosperm-expressed imprinted gene that regulates endosperm development in rice
OsbZIP76	Os09g0520400	LOC_Os09g34880	starch	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	Genes involved in endosperm development or starch biosynthesis were prematurely activated in the osbzip76 caryopsis
OsbZIP76	Os09g0520400	LOC_Os09g34880	endosperm	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).
OsbZIP76	Os09g0520400	LOC_Os09g34880	endosperm	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	Genes involved in endosperm development or starch biosynthesis were prematurely activated in the osbzip76 caryopsis
OsbZIP76	Os09g0520400	LOC_Os09g34880	endosperm	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	OsbZIP76 and OsNF-YB9 were  predominantly expressed in the endosperm and the proteins colocalized
OsbZIP76	Os09g0520400	LOC_Os09g34880	endosperm	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	In summary, OsbZIP76 is an endosperm-expressed imprinted gene that regulates endosperm development in rice
OsbZIP76	Os09g0520400	LOC_Os09g34880	starch biosynthesis	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	Genes involved in endosperm development or starch biosynthesis were prematurely activated in the osbzip76 caryopsis
OsbZIP76	Os09g0520400	LOC_Os09g34880	endosperm development	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	Genes involved in endosperm development or starch biosynthesis were prematurely activated in the osbzip76 caryopsis
OsbZIP76	Os09g0520400	LOC_Os09g34880	endosperm development	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice  (Oryza sativa).	In summary, OsbZIP76 is an endosperm-expressed imprinted gene that regulates endosperm development in rice
OsbZIP76	Os09g0520400	LOC_Os09g34880	endosperm cellularization	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa)	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa)
OsbZIP76	Os09g0520400	LOC_Os09g34880	amylose content	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa)	Seeds of osnf-yb1 and osbzip76 mutants showed reduced size and reduced apparent amylose content.
OsbZIP76	Os09g0520400	LOC_Os09g34880	seed size	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa)	Seeds of osnf-yb1 and osbzip76 mutants showed reduced size and reduced apparent amylose content.
OsbZIP79|OsTGA911	Os11g0152700	LOC_Os11g05480	phytoalexin production	Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.	These results suggest that OsbZIP79 functions as a negative regulator of phytoalexin production triggered by a chitin oligosaccharide elicitor in rice cells, although it remains open under which conditions OsbZIP79 can work with OsTGAP1.
OsbZIP79|OsTGA911	Os11g0152700	LOC_Os11g05480	phytoalexin production	Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.	Among the OsTGAP1-interacting protein candidates, a TGA factor OsbZIP79 was investigated to verify its physical interaction with OsTGAP1 and involvement in the regulation of phytoalexin production.
OsbZIP81	Os11g0160500	LOC_Os11g06170	jasmonic	OsbZIP81, A Homologue of Arabidopsis VIP1, May Positively Regulate JA Levels by Directly Targetting the Genes in JA Signaling and Metabolism Pathway in Rice.	Moreover, Agrobacterium, Methyl Jasmonic Acid (MeJA), and PEG6000 can largely induce OsbZIP81
OsbZIP81	Os11g0160500	LOC_Os11g06170	jasmonic acid	OsbZIP81, A Homologue of Arabidopsis VIP1, May Positively Regulate JA Levels by Directly Targetting the Genes in JA Signaling and Metabolism Pathway in Rice.	Moreover, Agrobacterium, Methyl Jasmonic Acid (MeJA), and PEG6000 can largely induce OsbZIP81
OsbZIP81	Os11g0160500	LOC_Os11g06170	ja	OsbZIP81, A Homologue of Arabidopsis VIP1, May Positively Regulate JA Levels by Directly Targetting the Genes in JA Signaling and Metabolism Pathway in Rice.	Together, these results suggest that OsbZIP81 may positively regulate JA levels by directly targeting the genes in JA signaling and metabolism pathway in rice
OsbZIP81	Os11g0160500	LOC_Os11g06170	JA	OsbZIP81, A Homologue of Arabidopsis VIP1, May Positively Regulate JA Levels by Directly Targetting the Genes in JA Signaling and Metabolism Pathway in Rice.	Together, these results suggest that OsbZIP81 may positively regulate JA levels by directly targeting the genes in JA signaling and metabolism pathway in rice
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	brassinosteroid	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice	These results demonstrate a conserved function of OsBZR1 and an important role of 14-3-3 proteins in brassinosteroid signal transduction in rice
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	brassinosteroid	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	 BR 	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice	To understand the downstream BR signaling mechanism in rice, we studied the function of OsBZR1 using reverse genetic approaches and identified OsBZR1-interacting proteins
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	 BR 	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice	Suppressing OsBZR1 expression by RNAi resulted in dwarfism, erect leaves, reduced BR sensitivity, and altered BR-responsive gene expression in transgenic rice plants, demonstrating an essential role of OsBZR1 in BR responses in rice
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	dwarf	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice	Suppressing OsBZR1 expression by RNAi resulted in dwarfism, erect leaves, reduced BR sensitivity, and altered BR-responsive gene expression in transgenic rice plants, demonstrating an essential role of OsBZR1 in BR responses in rice
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	BR signaling	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice	To understand the downstream BR signaling mechanism in rice, we studied the function of OsBZR1 using reverse genetic approaches and identified OsBZR1-interacting proteins
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	 BR 	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice	Finally, consistent with the fact that DLT is also negatively feedback-regulated by BR treatment, a gel mobility shift assay showed that OsBZR1 can bind to the DLT promoter through the BR-response element
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	erect	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice	Suppressing OsBZR1 expression by RNAi resulted in dwarfism, erect leaves, reduced BR sensitivity, and altered BR-responsive gene expression in transgenic rice plants, demonstrating an essential role of OsBZR1 in BR responses in rice
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	grain	Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.)	We reported that DGS1 plays a positive role in regulating grain size in rice and was regulated by OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	grain	Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.)	 OsBZR1 (BRASSINAZOLE-RESISTANT1), a core transcription activator of BR signaling, also plays a positive role in grain size
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	grain size	Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.)	We reported that DGS1 plays a positive role in regulating grain size in rice and was regulated by OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	grain size	Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.)	 OsBZR1 (BRASSINAZOLE-RESISTANT1), a core transcription activator of BR signaling, also plays a positive role in grain size
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	 BR 	Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.)	 OsBZR1 (BRASSINAZOLE-RESISTANT1), a core transcription activator of BR signaling, also plays a positive role in grain size
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	BR signaling	Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.)	 OsBZR1 (BRASSINAZOLE-RESISTANT1), a core transcription activator of BR signaling, also plays a positive role in grain size
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	transcription activator	Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.)	 OsBZR1 (BRASSINAZOLE-RESISTANT1), a core transcription activator of BR signaling, also plays a positive role in grain size
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	growth	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	grain	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 We further show that GRAIN NUMBER, PLANT HEIGHT, and HEADING DATE 7 (Ghd7), a central regulator of growth, development, and the stress response, is a direct target of OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	grain number	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 We further show that GRAIN NUMBER, PLANT HEIGHT, and HEADING DATE 7 (Ghd7), a central regulator of growth, development, and the stress response, is a direct target of OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	stress	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 We further show that GRAIN NUMBER, PLANT HEIGHT, and HEADING DATE 7 (Ghd7), a central regulator of growth, development, and the stress response, is a direct target of OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	brassinosteroid	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	 BR 	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 We also show that HDA703 is a direct target of BRASSINAZOLE-RESISTANT1 (OsBZR1), a primary regulator of rice BR signaling, and HDA703 interacts with OsBZR1 in rice
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	 BR 	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 Together, our study suggests that HDA703, a histone H4 deacetylase, interacts with OsBZR1 to regulate rice BR signaling, growth, and heading date through epigenetic regulation of Ghd7
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	heading date	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	heading date	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 We further show that GRAIN NUMBER, PLANT HEIGHT, and HEADING DATE 7 (Ghd7), a central regulator of growth, development, and the stress response, is a direct target of OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	heading date	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 Together, our study suggests that HDA703, a histone H4 deacetylase, interacts with OsBZR1 to regulate rice BR signaling, growth, and heading date through epigenetic regulation of Ghd7
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	Brassinosteroid	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	plant height	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 We further show that GRAIN NUMBER, PLANT HEIGHT, and HEADING DATE 7 (Ghd7), a central regulator of growth, development, and the stress response, is a direct target of OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	BR signaling	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 We also show that HDA703 is a direct target of BRASSINAZOLE-RESISTANT1 (OsBZR1), a primary regulator of rice BR signaling, and HDA703 interacts with OsBZR1 in rice
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	BR signaling	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 Together, our study suggests that HDA703, a histone H4 deacetylase, interacts with OsBZR1 to regulate rice BR signaling, growth, and heading date through epigenetic regulation of Ghd7
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	Brassinosteroid Signaling	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	stress response	The histone deacetylase HDA703 interacts with OsBZR1 to regulate rice brassinosteroid signaling, growth and heading date through repression of Ghd7 expression	 We further show that GRAIN NUMBER, PLANT HEIGHT, and HEADING DATE 7 (Ghd7), a central regulator of growth, development, and the stress response, is a direct target of OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	root	BZR1 Regulates Brassinosteroid-Mediated Activation of AMT1;2 in Rice	 Moreover, cellular ammonium contents, 15NH4 + uptake, and the regulatory effect of methyl-ammonium on root growth are strongly dependent on the levels of BZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	growth	BZR1 Regulates Brassinosteroid-Mediated Activation of AMT1;2 in Rice	 Moreover, cellular ammonium contents, 15NH4 + uptake, and the regulatory effect of methyl-ammonium on root growth are strongly dependent on the levels of BZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	root growth	BZR1 Regulates Brassinosteroid-Mediated Activation of AMT1;2 in Rice	 Moreover, cellular ammonium contents, 15NH4 + uptake, and the regulatory effect of methyl-ammonium on root growth are strongly dependent on the levels of BZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	brassinosteroid	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	 BR 	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	 Genetic and molecular analyses indicated that OsGF14b functions as a negative regulator in BR signaling and represses the transcriptional activation activity of OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	Brassinosteroid	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	BR signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	 Genetic and molecular analyses indicated that OsGF14b functions as a negative regulator in BR signaling and represses the transcriptional activation activity of OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	Brassinosteroid Signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling	qGL3/OsPPKL1 Induces Phosphorylation of 14-3-3 OsGF14b to Inhibit OsBZR1 Function in Brassinosteroid Signaling
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	resistant	The Histone Deacetylase 1/ GSK3/SHAGGY-Like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls Lateral Root Formation in Rice.	 OsGSK2 deacetylation attenuated the interaction between OsGSK2 and BRASSINAZOLE RESISTANT 1 (OsBZR1), leading to accumulation of OsBZR1
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	brassinosteroid	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 Although BZR1 is known to regulate brassinosteroid (BR) signalling, the observation that BR signalling negatively regulated resistance to ShB indicated an independent role for BZR1 in controlling rice resistance
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	BR	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 Although BZR1 is known to regulate brassinosteroid (BR) signalling, the observation that BR signalling negatively regulated resistance to ShB indicated an independent role for BZR1 in controlling rice resistance
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	Brassinosteroid	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 Although BZR1 is known to regulate brassinosteroid (BR) signalling, the observation that BR signalling negatively regulated resistance to ShB indicated an independent role for BZR1 in controlling rice resistance
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	resistance	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 Plants overexpressing PIL15 were more susceptible to ShB in contrast to bzr1-D-overexpressing plants compared with the wild-type, suggesting that PhyB may inhibit BZR1 to negatively regulate rice resistance to ShB
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	resistance	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 Although BZR1 is known to regulate brassinosteroid (BR) signalling, the observation that BR signalling negatively regulated resistance to ShB indicated an independent role for BZR1 in controlling rice resistance
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	resistance	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 It was also found that the BZR1 ligand NAC028 positively regulated resistance to ShB
OsBZR1|BZR1	Os07g0580500	LOC_Os07g39220	 BR 	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 Although BZR1 is known to regulate brassinosteroid (BR) signalling, the observation that BR signalling negatively regulated resistance to ShB indicated an independent role for BZR1 in controlling rice resistance
OsC1	Os06g0205100	LOC_Os06g10350	resistance	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	These results indicate that OsVP1 promotes proanthocyanidin accumulation through the interaction among OsVP1, Rc, and OsC1 and then increases the plant's ABA sensitivity and PHS resistance
OsC1	Os06g0205100	LOC_Os06g10350	ABA	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	These results indicate that OsVP1 promotes proanthocyanidin accumulation through the interaction among OsVP1, Rc, and OsC1 and then increases the plant's ABA sensitivity and PHS resistance
OsC1	Os06g0205100	LOC_Os06g10350	ABA	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	These results indicate that OsVP1 promotes proanthocyanidin accumulation through the interaction among OsVP1, Rc, and OsC1 and then increases the plant's ABA sensitivity and PHS resistance
OsC1	Os06g0205100	LOC_Os06g10350	oxidative stress	A rice R2R3-MYB (OsC1) transcriptional regulator improves oxidative stress tolerance by modulating anthocyanin biosynthesis	The OsC1 transcriptional regulator helps to ameliorate oxidative stresses in plants owing to its anthocyanin modulating ability
OsC1	Os06g0205100	LOC_Os06g10350	oxidative	A rice R2R3-MYB (OsC1) transcriptional regulator improves oxidative stress tolerance by modulating anthocyanin biosynthesis	The OsC1 transcriptional regulator helps to ameliorate oxidative stresses in plants owing to its anthocyanin modulating ability
OsC1	Os06g0205100	LOC_Os06g10350	transcriptional regulator	A rice R2R3-MYB (OsC1) transcriptional regulator improves oxidative stress tolerance by modulating anthocyanin biosynthesis	The positive correlation between the expression of ABP genes and OsC1 along with the nuclear localization of OsC1 are in line with its possible involvement as a transcriptional regulator of ABP genes
OsC1	Os06g0205100	LOC_Os06g10350	transcriptional regulator	A rice R2R3-MYB (OsC1) transcriptional regulator improves oxidative stress tolerance by modulating anthocyanin biosynthesis	The OsC1 transcriptional regulator helps to ameliorate oxidative stresses in plants owing to its anthocyanin modulating ability
OsC2DP	Os09g0571200	LOC_Os09g39770	shoot	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Knockout of OsC2DP did not affect Na+ concentration in the roots, but increased shoot Na+ concentration, resulting in a significant sensitivity of rice to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	salt	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Here, we reported a novel C2 domain-containing protein, OsC2DP required for salt tolerance in rice
OsC2DP	Os09g0571200	LOC_Os09g39770	salt	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	OsC2DP was predominately expressed in the roots and its expression was repressed by salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	salt	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Immunostaining further showed that OsC2DP was able to translocate from the cytosol to plasma membrane under salt conditions
OsC2DP	Os09g0571200	LOC_Os09g39770	salt	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Knockout of OsC2DP did not affect Na+ concentration in the roots, but increased shoot Na+ concentration, resulting in a significant sensitivity of rice to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	salt	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	These results indicate that OsC2DP has an important role in salt tolerance and these findings provide new insights into the regulation of OsC2DP gene for rice breeding with high salt tolerance
OsC2DP	Os09g0571200	LOC_Os09g39770	tolerance	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Here, we reported a novel C2 domain-containing protein, OsC2DP required for salt tolerance in rice
OsC2DP	Os09g0571200	LOC_Os09g39770	tolerance	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	These results indicate that OsC2DP has an important role in salt tolerance and these findings provide new insights into the regulation of OsC2DP gene for rice breeding with high salt tolerance
OsC2DP	Os09g0571200	LOC_Os09g39770	salt tolerance	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Here, we reported a novel C2 domain-containing protein, OsC2DP required for salt tolerance in rice
OsC2DP	Os09g0571200	LOC_Os09g39770	salt tolerance	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	These results indicate that OsC2DP has an important role in salt tolerance and these findings provide new insights into the regulation of OsC2DP gene for rice breeding with high salt tolerance
OsC2DP	Os09g0571200	LOC_Os09g39770	salt stress	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	OsC2DP was predominately expressed in the roots and its expression was repressed by salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	salt stress	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Knockout of OsC2DP did not affect Na+ concentration in the roots, but increased shoot Na+ concentration, resulting in a significant sensitivity of rice to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	stress	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	OsC2DP was predominately expressed in the roots and its expression was repressed by salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	stress	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Knockout of OsC2DP did not affect Na+ concentration in the roots, but increased shoot Na+ concentration, resulting in a significant sensitivity of rice to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	breeding	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	These results indicate that OsC2DP has an important role in salt tolerance and these findings provide new insights into the regulation of OsC2DP gene for rice breeding with high salt tolerance
OsC2DP	Os09g0571200	LOC_Os09g39770	plasma membrane	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Immunostaining further showed that OsC2DP was able to translocate from the cytosol to plasma membrane under salt conditions
OsC2DP	Os09g0571200	LOC_Os09g39770	salt	C2 domain plays critical roles in localization of novel C2 domain-containing protein OsC2DP.	OsC2DP is a cytosolic protein containing a C2 domain recently identified in rice, which is translocated to the plasma membrane in response to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	salt	C2 domain plays critical roles in localization of novel C2 domain-containing protein OsC2DP.	These results indicated that the subcellular localization was determined by C2 domain of OsC2DP under normal conditions and that both N- and C-terminus of OsC2DP are essential for its cytosol-plasma membrane translocation in response to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	salt stress	C2 domain plays critical roles in localization of novel C2 domain-containing protein OsC2DP.	OsC2DP is a cytosolic protein containing a C2 domain recently identified in rice, which is translocated to the plasma membrane in response to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	salt stress	C2 domain plays critical roles in localization of novel C2 domain-containing protein OsC2DP.	These results indicated that the subcellular localization was determined by C2 domain of OsC2DP under normal conditions and that both N- and C-terminus of OsC2DP are essential for its cytosol-plasma membrane translocation in response to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	stress	C2 domain plays critical roles in localization of novel C2 domain-containing protein OsC2DP.	OsC2DP is a cytosolic protein containing a C2 domain recently identified in rice, which is translocated to the plasma membrane in response to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	stress	C2 domain plays critical roles in localization of novel C2 domain-containing protein OsC2DP.	These results indicated that the subcellular localization was determined by C2 domain of OsC2DP under normal conditions and that both N- and C-terminus of OsC2DP are essential for its cytosol-plasma membrane translocation in response to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	plasma membrane	C2 domain plays critical roles in localization of novel C2 domain-containing protein OsC2DP.	OsC2DP is a cytosolic protein containing a C2 domain recently identified in rice, which is translocated to the plasma membrane in response to salt stress
OsC2DP	Os09g0571200	LOC_Os09g39770	plasma membrane	C2 domain plays critical roles in localization of novel C2 domain-containing protein OsC2DP.	These results indicated that the subcellular localization was determined by C2 domain of OsC2DP under normal conditions and that both N- and C-terminus of OsC2DP are essential for its cytosol-plasma membrane translocation in response to salt stress
OsC3H10	Os01g0738400	LOC_Os01g53650	seed	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	OsC3H10 is predominantly expressed in seeds, and its expression levels rapidly declined during seed imbibition
OsC3H10	Os01g0738400	LOC_Os01g53650	drought	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Root-specific overexpression of OsC3H10 was insufficient to induce drought tolerance, while the overexpression of OsC3H10 throughout the entire plant enhanced the drought tolerance of rice plants
OsC3H10	Os01g0738400	LOC_Os01g53650	drought	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Our results demonstrated that OsC3H10 is involved in the regulation of the drought tolerance pathway by modulating the expression of stress-related genes
OsC3H10	Os01g0738400	LOC_Os01g53650	salinity	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	The expression of OsC3H10 was induced by drought, high salinity and abscisic acid (ABA)
OsC3H10	Os01g0738400	LOC_Os01g53650	tolerance	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Root-specific overexpression of OsC3H10 was insufficient to induce drought tolerance, while the overexpression of OsC3H10 throughout the entire plant enhanced the drought tolerance of rice plants
OsC3H10	Os01g0738400	LOC_Os01g53650	tolerance	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Our results demonstrated that OsC3H10 is involved in the regulation of the drought tolerance pathway by modulating the expression of stress-related genes
OsC3H10	Os01g0738400	LOC_Os01g53650	drought tolerance	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Root-specific overexpression of OsC3H10 was insufficient to induce drought tolerance, while the overexpression of OsC3H10 throughout the entire plant enhanced the drought tolerance of rice plants
OsC3H10	Os01g0738400	LOC_Os01g53650	drought tolerance	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Our results demonstrated that OsC3H10 is involved in the regulation of the drought tolerance pathway by modulating the expression of stress-related genes
OsC3H10	Os01g0738400	LOC_Os01g53650	stress	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Subcellular localization analysis revealed that OsC3H10 localized not only in the nucleus but also to the processing bodies and stress granules upon stress treatment
OsC3H10	Os01g0738400	LOC_Os01g53650	stress	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Transcriptome analysis revealed that OsC3H10 overexpression elevated the expression levels of genes involved in stress responses, including LATE EMBRYOGENESIS ABUNDANT PROTEINs (LEAs), PATHOGENESIS RELATED GENEs (PRs) and GERMIN-LIKE PROTEINs (GLPs)
OsC3H10	Os01g0738400	LOC_Os01g53650	nucleus	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Subcellular localization analysis revealed that OsC3H10 localized not only in the nucleus but also to the processing bodies and stress granules upon stress treatment
OsC3H10	Os01g0738400	LOC_Os01g53650	abscisic acid	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	The expression of OsC3H10 was induced by drought, high salinity and abscisic acid (ABA)
OsC3H10	Os01g0738400	LOC_Os01g53650	stress response	Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related Genes	Transcriptome analysis revealed that OsC3H10 overexpression elevated the expression levels of genes involved in stress responses, including LATE EMBRYOGENESIS ABUNDANT PROTEINs (LEAs), PATHOGENESIS RELATED GENEs (PRs) and GERMIN-LIKE PROTEINs (GLPs)
OsC3H47	Os07g0138400	LOC_Os07g04580	drought	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.
OsC3H47	Os07g0138400	LOC_Os07g04580	drought	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	Overexpression of OsC3H47 significantly enhanced tolerance to drought and salt stresses in rice seedlings, which indicates that OsC3H47 plays important roles in post-stress recovery
OsC3H47	Os07g0138400	LOC_Os07g04580	ABA	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.
OsC3H47	Os07g0138400	LOC_Os07g04580	ABA	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	However, overexpression of OsC3H47 reduced the ABA sensitivity of rice seedlings
OsC3H47	Os07g0138400	LOC_Os07g04580	ABA	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	This suggests that OsC3H47 is a newly discovered gene that can control rice drought-stress response, and it may play an important role in ABA feedback and post-transcription processes
OsC3H47	Os07g0138400	LOC_Os07g04580	drought tolerance	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.
OsC3H47	Os07g0138400	LOC_Os07g04580	salt	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	Overexpression of OsC3H47 significantly enhanced tolerance to drought and salt stresses in rice seedlings, which indicates that OsC3H47 plays important roles in post-stress recovery
OsC3H47	Os07g0138400	LOC_Os07g04580	salt stress	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	Overexpression of OsC3H47 significantly enhanced tolerance to drought and salt stresses in rice seedlings, which indicates that OsC3H47 plays important roles in post-stress recovery
OsC3H47	Os07g0138400	LOC_Os07g04580	tolerance	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.
OsC3H47	Os07g0138400	LOC_Os07g04580	tolerance	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	Overexpression of OsC3H47 significantly enhanced tolerance to drought and salt stresses in rice seedlings, which indicates that OsC3H47 plays important roles in post-stress recovery
OsC3H47	Os07g0138400	LOC_Os07g04580	ABA	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.
OsC3H47	Os07g0138400	LOC_Os07g04580	ABA	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	However, overexpression of OsC3H47 reduced the ABA sensitivity of rice seedlings
OsC3H47	Os07g0138400	LOC_Os07g04580	ABA	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	This suggests that OsC3H47 is a newly discovered gene that can control rice drought-stress response, and it may play an important role in ABA feedback and post-transcription processes
OsC3H47	Os07g0138400	LOC_Os07g04580	stress response	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	This suggests that OsC3H47 is a newly discovered gene that can control rice drought-stress response, and it may play an important role in ABA feedback and post-transcription processes
OsC3H47	Os07g0138400	LOC_Os07g04580	zinc	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.
OsC3H47	Os07g0138400	LOC_Os07g04580	R protein	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.
OsC3H47	Os07g0138400	LOC_Os07g04580	seedlings	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	However, overexpression of OsC3H47 reduced the ABA sensitivity of rice seedlings
OSC4	Os08g0546300	LOC_Os08g43290	root	Isolation of genes abundantly expressed in rice anthers at the microspore stage	By differential screening of the library, we have isolated cDNAs of two genes, designated as Osc4 and Osc6, that are abundantly expressed in anthers containing tetrads and uninucleate microspores, but are not expressed in leaves or roots
OSC4	Os08g0546300	LOC_Os08g43290	anther	Molecular characterization of rice genes specifically expressed in the anther tapetum	In situ localization of mRNA was carried out on two cDNAs (Osc4 and Osc6) that had been isolated from rice anthers at the microspore stage
OSC4	Os08g0546300	LOC_Os08g43290	pollen	Isolation of genes abundantly expressed in rice anthers at the microspore stage	Expression of Osc4 is absent in mature anthers, while Osc6 is present although the expression decays during pollen maturation
OSC4	Os08g0546300	LOC_Os08g43290	microspore	Molecular characterization of rice genes specifically expressed in the anther tapetum	In situ localization of mRNA was carried out on two cDNAs (Osc4 and Osc6) that had been isolated from rice anthers at the microspore stage
OSC4	Os08g0546300	LOC_Os08g43290	anther	Isolation of genes abundantly expressed in rice anthers at the microspore stage	By differential screening of the library, we have isolated cDNAs of two genes, designated as Osc4 and Osc6, that are abundantly expressed in anthers containing tetrads and uninucleate microspores, but are not expressed in leaves or roots
OSC4	Os08g0546300	LOC_Os08g43290	anther	Isolation of genes abundantly expressed in rice anthers at the microspore stage	Expression of Osc4 is absent in mature anthers, while Osc6 is present although the expression decays during pollen maturation
OSC4	Os08g0546300	LOC_Os08g43290	microspore	Isolation of genes abundantly expressed in rice anthers at the microspore stage	By differential screening of the library, we have isolated cDNAs of two genes, designated as Osc4 and Osc6, that are abundantly expressed in anthers containing tetrads and uninucleate microspores, but are not expressed in leaves or roots
OsC6	Os11g0582500	LOC_Os11g37280	cuticle	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Immunological assays indicated that OsC6 is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle
OsC6	Os11g0582500	LOC_Os11g37280	anther development	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Here, we report the crucial role of OsC6 in regulating postmeiotic anther development in rice (Oryza sativa)
OsC6	Os11g0582500	LOC_Os11g37280	anther development	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	OsC6 expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development
OsC6	Os11g0582500	LOC_Os11g37280	anther development	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	These data suggest that OsC6 plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice
OsC6	Os11g0582500	LOC_Os11g37280	anther development	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice
OsC6	Os11g0582500	LOC_Os11g37280	pollen	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	These data suggest that OsC6 plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice
OsC6	Os11g0582500	LOC_Os11g37280	microspore	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	OsC6 expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development
OsC6	Os11g0582500	LOC_Os11g37280	tapetum	High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development	The expression levels of Osc6, OsRAFTIN and TDR, which are tapetum-specific genes, were unaffected by high temperatures
OsC6	Os11g0582500	LOC_Os11g37280	tapetal	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	OsC6 expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development
OsC6	Os11g0582500	LOC_Os11g37280	tapetal	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Immunological assays indicated that OsC6 is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle
OsC6	Os11g0582500	LOC_Os11g37280	tapetal	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Extra granule-like structures were observed on the inner surface of the tdr tapetal layer when the expression of OsC6 was driven by the TDR promoter compared with the tdr mutant
OsC6	Os11g0582500	LOC_Os11g37280	temperature	High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development	The expression levels of Osc6, OsRAFTIN and TDR, which are tapetum-specific genes, were unaffected by high temperatures
OsC6	Os11g0582500	LOC_Os11g37280	tapetum	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Immunological assays indicated that OsC6 is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle
OsC6	Os11g0582500	LOC_Os11g37280	tapetum	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Furthermore, additional evidence is provided that the expression of OsC6 is positively regulated by a basic helix-loop-helix transcription factor, Tapetum Degeneration Retardation (TDR)
OsC6	Os11g0582500	LOC_Os11g37280	transcription factor	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Furthermore, additional evidence is provided that the expression of OsC6 is positively regulated by a basic helix-loop-helix transcription factor, Tapetum Degeneration Retardation (TDR)
OsC6	Os11g0582500	LOC_Os11g37280	meiotic	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Here, we report the crucial role of OsC6 in regulating postmeiotic anther development in rice (Oryza sativa)
OsC6	Os11g0582500	LOC_Os11g37280	meiotic	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice
OsC6	Os11g0582500	LOC_Os11g37280	anther	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Here, we report the crucial role of OsC6 in regulating postmeiotic anther development in rice (Oryza sativa)
OsC6	Os11g0582500	LOC_Os11g37280	anther	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	OsC6 expression is mainly detectable in tapetal cells and weakly in microspores from stage 9 to stage 11 of anther development
OsC6	Os11g0582500	LOC_Os11g37280	anther	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Immunological assays indicated that OsC6 is widely distributed in anther tissues such as the tapetal cytoplasm, the extracellular space between the tapetum and middle layer, and the anther locule and anther cuticle
OsC6	Os11g0582500	LOC_Os11g37280	anther	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	These data suggest that OsC6 plays a crucial role in the development of lipidic orbicules and pollen exine during anther development in rice
OsC6	Os11g0582500	LOC_Os11g37280	anther	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice
OsCA1|OsbetaCA1	Os01g0639900	LOC_Os01g45274	salt	Expression of a carbonic anhydrase gene is induced by environmental stresses in rice (Oryza sativa L.)	Expression of the gene (OsCA1) coding for carbonic anhydrase (CA) in leaves and roots of rice was induced by environmental stresses from salts (NaCl, NaHCO(3) and Na(2)CO(3)), and osmotic stress (10%, w/v, PEG 6000)
OsCA1|OsbetaCA1	Os01g0639900	LOC_Os01g45274	salt	Expression of a carbonic anhydrase gene is induced by environmental stresses in rice (Oryza sativa L.)	Transgenic Arabidopsis over-expressing OsCA1 had a greater salt tolerance at the seedling stage than wild-type plants in 1/2 MS medium with 5 mM NaHCO(3), 50 mM NaCl, on 100 mM NaCl
OsCA1|OsbetaCA1	Os01g0639900	LOC_Os01g45274	salt tolerance	Expression of a carbonic anhydrase gene is induced by environmental stresses in rice (Oryza sativa L.)	Transgenic Arabidopsis over-expressing OsCA1 had a greater salt tolerance at the seedling stage than wild-type plants in 1/2 MS medium with 5 mM NaHCO(3), 50 mM NaCl, on 100 mM NaCl
OsCA1|OsbetaCA1	Os01g0639900	LOC_Os01g45274	seedling	Expression of a carbonic anhydrase gene is induced by environmental stresses in rice (Oryza sativa L.)	Transgenic Arabidopsis over-expressing OsCA1 had a greater salt tolerance at the seedling stage than wild-type plants in 1/2 MS medium with 5 mM NaHCO(3), 50 mM NaCl, on 100 mM NaCl
OsCA1|OsbetaCA1	Os01g0639900	LOC_Os01g45274	root	Expression of a carbonic anhydrase gene is induced by environmental stresses in rice (Oryza sativa L.)	Expression of the gene (OsCA1) coding for carbonic anhydrase (CA) in leaves and roots of rice was induced by environmental stresses from salts (NaCl, NaHCO(3) and Na(2)CO(3)), and osmotic stress (10%, w/v, PEG 6000)
OsCADT1|FLO20	Os01g0874900	LOC_Os01g65410	tolerance	Mutation in OsCADT1 enhances cadmium tolerance and enriches selenium in rice grain.	Mutation in OsCADT1 enhances cadmium tolerance and enriches selenium in rice grain.
OsCADT1|FLO20	Os01g0874900	LOC_Os01g65410	tolerance	Mutation in OsCADT1 enhances cadmium tolerance and enriches selenium in rice grain.	 OsCADT1 mutation increases Cd tolerance and enriches selenium in rice grains, providing a novel solution for selenium biofortification
OsCADT1|FLO20	Os01g0874900	LOC_Os01g65410	nucleus	Mutation in OsCADT1 enhances cadmium tolerance and enriches selenium in rice grain.	 <U+2022>OsCADT1 protein was localized to the nucleus and OsCADT1 gene was expressed in both roots and shoots
OsCADT1|FLO20	Os01g0874900	LOC_Os01g65410	cadmium	Mutation in OsCADT1 enhances cadmium tolerance and enriches selenium in rice grain.	Mutation in OsCADT1 enhances cadmium tolerance and enriches selenium in rice grain.
OsCADT1|FLO20	Os01g0874900	LOC_Os01g65410	endosperm development	FLOURY ENDOSPERM20 encoding SHMT4 is required for rice endosperm development	FLOURY ENDOSPERM20 encoding SHMT4 is required for rice endosperm development
OsCADT1|FLO20	Os01g0874900	LOC_Os01g65410	endosperm	FLOURY ENDOSPERM20 encoding SHMT4 is required for rice endosperm development	FLOURY ENDOSPERM20 encoding SHMT4 is required for rice endosperm development
OsCAF1	Os01g0495900	LOC_Os01g31110	chloroplast	OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.	The mesophyll cells in oscaf1 mutant had decreased chloroplast numbers and damaged chloroplast structures
OsCAF1	Os01g0495900	LOC_Os01g31110	chloroplast	OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.	OsCAF1 regulates chloroplast development by influencing the splicing of group II introns
OsCAF1	Os01g0495900	LOC_Os01g31110	seedling	OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.	In the study, we generated oscaf1 albino mutants, which eventually died at the seedling stage, through the editing of OsCAF1 with two CRM domains using CRISPR/Cas9 technology
OsCAF1	Os01g0495900	LOC_Os01g31110	development	OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.	OsCAF1 regulates chloroplast development by influencing the splicing of group II introns
OsCAF1	Os01g0495900	LOC_Os01g31110	chloroplast development	OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.	OsCAF1 regulates chloroplast development by influencing the splicing of group II introns
OsCAF1B	Os04g0684900	LOC_Os04g58810	growth	A CCR4 association factor 1, OsCAF1B, participates in the Amy3 mRNA poly(A) tail shortening and plays a role in germination and seedling growth.	Additionally, we found that overexpression of OsCAF1B retards seed germination and seedling growth
OsCAF1B	Os04g0684900	LOC_Os04g58810	seedling	A CCR4 association factor 1, OsCAF1B, participates in the Amy3 mRNA poly(A) tail shortening and plays a role in germination and seedling growth.	Additionally, we found that overexpression of OsCAF1B retards seed germination and seedling growth
OsCAF1B	Os04g0684900	LOC_Os04g58810	seedling	A CCR4 association factor 1, OsCAF1B, participates in the Amy3 mRNA poly(A) tail shortening and plays a role in germination and seedling growth.	These findings indicate that OsCAF1B participates in sugar-induced Amy3 mRNA degradation and deadenylation, and acts a negative factor for germination and seedling development
OsCAF1B	Os04g0684900	LOC_Os04g58810	development	A CCR4 association factor 1, OsCAF1B, participates in the Amy3 mRNA poly(A) tail shortening and plays a role in germination and seedling growth.	These findings indicate that OsCAF1B participates in sugar-induced Amy3 mRNA degradation and deadenylation, and acts a negative factor for germination and seedling development
OsCAF1B	Os04g0684900	LOC_Os04g58810	seed	A CCR4 association factor 1, OsCAF1B, participates in the Amy3 mRNA poly(A) tail shortening and plays a role in germination and seedling growth.	Additionally, we found that overexpression of OsCAF1B retards seed germination and seedling growth
OsCAF1B	Os04g0684900	LOC_Os04g58810	seed germination	A CCR4 association factor 1, OsCAF1B, participates in the Amy3 mRNA poly(A) tail shortening and plays a role in germination and seedling growth.	Additionally, we found that overexpression of OsCAF1B retards seed germination and seedling growth
OsCAF1B	Os04g0684900	LOC_Os04g58810	transcription factor	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The enhancement of cold tolerance by OsCAF1B in transgenic rice seedlings involved OsCAF1B deadenylase gene expression, and was associated with elevated expression of late-response cold-related transcription factor genes
OsCAF1B	Os04g0684900	LOC_Os04g58810	seedlings	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	Our results demonstrate that OsCAF1B plays an important role in growth and development of rice seedlings at low temperatures
OsCAF1B	Os04g0684900	LOC_Os04g58810	seedlings	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The enhancement of cold tolerance by OsCAF1B in transgenic rice seedlings involved OsCAF1B deadenylase gene expression, and was associated with elevated expression of late-response cold-related transcription factor genes
OsCAF1B	Os04g0684900	LOC_Os04g58810	temperature	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The increased survival percentage and reduced electrolyte leakage exhibited by OsCAF1B overexpression transgenic lines subjected to cold stress indicate that OsCAF1B plays a positive role in rice growth under low ambient temperature
OsCAF1B	Os04g0684900	LOC_Os04g58810	growth	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	Our results demonstrate that OsCAF1B plays an important role in growth and development of rice seedlings at low temperatures
OsCAF1B	Os04g0684900	LOC_Os04g58810	growth	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The increased survival percentage and reduced electrolyte leakage exhibited by OsCAF1B overexpression transgenic lines subjected to cold stress indicate that OsCAF1B plays a positive role in rice growth under low ambient temperature
OsCAF1B	Os04g0684900	LOC_Os04g58810	development	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	Our results demonstrate that OsCAF1B plays an important role in growth and development of rice seedlings at low temperatures
OsCAF1B	Os04g0684900	LOC_Os04g58810	tolerance	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The enhancement of cold tolerance by OsCAF1B in transgenic rice seedlings involved OsCAF1B deadenylase gene expression, and was associated with elevated expression of late-response cold-related transcription factor genes
OsCAF1B	Os04g0684900	LOC_Os04g58810	cold tolerance	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The enhancement of cold tolerance by OsCAF1B in transgenic rice seedlings involved OsCAF1B deadenylase gene expression, and was associated with elevated expression of late-response cold-related transcription factor genes
OsCAF1B	Os04g0684900	LOC_Os04g58810	cold stress	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	In the present study, we investigated the function of OsCAF1B in rice by characterizing the molecular and physiological responses to cold stress in OsCAF1B overexpression lines and dominant-negative mutant lines
OsCAF1B	Os04g0684900	LOC_Os04g58810	cold stress	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The increased survival percentage and reduced electrolyte leakage exhibited by OsCAF1B overexpression transgenic lines subjected to cold stress indicate that OsCAF1B plays a positive role in rice growth under low ambient temperature
OsCAF1B	Os04g0684900	LOC_Os04g58810	cold stress	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The results reveal a hitherto undiscovered function of OsCAF1B deadenylase gene expression, which is required for adaptation to cold stress in rice
OsCAF1B	Os04g0684900	LOC_Os04g58810	stress	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	In the present study, we investigated the function of OsCAF1B in rice by characterizing the molecular and physiological responses to cold stress in OsCAF1B overexpression lines and dominant-negative mutant lines
OsCAF1B	Os04g0684900	LOC_Os04g58810	stress	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The increased survival percentage and reduced electrolyte leakage exhibited by OsCAF1B overexpression transgenic lines subjected to cold stress indicate that OsCAF1B plays a positive role in rice growth under low ambient temperature
OsCAF1B	Os04g0684900	LOC_Os04g58810	stress	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The results reveal a hitherto undiscovered function of OsCAF1B deadenylase gene expression, which is required for adaptation to cold stress in rice
OsCAF1B	Os04g0684900	LOC_Os04g58810	cold	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	In the present study, we investigated the function of OsCAF1B in rice by characterizing the molecular and physiological responses to cold stress in OsCAF1B overexpression lines and dominant-negative mutant lines
OsCAF1B	Os04g0684900	LOC_Os04g58810	cold	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The increased survival percentage and reduced electrolyte leakage exhibited by OsCAF1B overexpression transgenic lines subjected to cold stress indicate that OsCAF1B plays a positive role in rice growth under low ambient temperature
OsCAF1B	Os04g0684900	LOC_Os04g58810	cold	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The enhancement of cold tolerance by OsCAF1B in transgenic rice seedlings involved OsCAF1B deadenylase gene expression, and was associated with elevated expression of late-response cold-related transcription factor genes
OsCAF1B	Os04g0684900	LOC_Os04g58810	cold	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings	The results reveal a hitherto undiscovered function of OsCAF1B deadenylase gene expression, which is required for adaptation to cold stress in rice
OsCAF2	Os01g0323300	LOC_Os01g21990	chloroplast	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice
OsCAF2	Os01g0323300	LOC_Os01g21990	chloroplast	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice	Phenotypic analysis showed that mutations to OsCAF2 led to albino leaves at the seeding stage that eventually caused plant death, and oscaf2 mutant plants had fewer chloroplasts and damaged chloroplast structure
OsCAF2	Os01g0323300	LOC_Os01g21990	chloroplast	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice	Conclusion: Taken together, this study improved our understanding of the OsCAF2 protein, and revealed additional information about the molecular mechanism of OsCAF2 in regulating of chloroplast development in rice
OsCAF2	Os01g0323300	LOC_Os01g21990	development	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice
OsCAF2	Os01g0323300	LOC_Os01g21990	development	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice	However, the research of the OsCAF2 gene in rice is very little, and the effects of OsCAF2 genes on chloroplasts development are not well characterized
OsCAF2	Os01g0323300	LOC_Os01g21990	development	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice	Conclusion: Taken together, this study improved our understanding of the OsCAF2 protein, and revealed additional information about the molecular mechanism of OsCAF2 in regulating of chloroplast development in rice
OsCAF2	Os01g0323300	LOC_Os01g21990	chloroplast development	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice
OsCAF2	Os01g0323300	LOC_Os01g21990	chloroplast development	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice	Conclusion: Taken together, this study improved our understanding of the OsCAF2 protein, and revealed additional information about the molecular mechanism of OsCAF2 in regulating of chloroplast development in rice
OsCAld5H1|CYP84A5	Os10g0512400	LOC_Os10g36848	vegetative	Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice.	Among three CAld5H genes identified in rice, OsCAld5H1 (CYP84A5) appeared to be predominantly expressed in lignin-producing rice vegetative tissues
OsCAld5H1|CYP84A5	Os10g0512400	LOC_Os10g36848	cell wall	Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice.	Our data collectively demonstrate that OsCAld5H1 expression is a major factor controlling S/G lignin composition in rice cell walls
OsCAld5H1|CYP84A5	Os10g0512400	LOC_Os10g36848	lignin	Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice.	Our data collectively demonstrate that OsCAld5H1 expression is a major factor controlling S/G lignin composition in rice cell walls
OsCAld5H1|CYP84A5	Os10g0512400	LOC_Os10g36848	lignin	Lignin characterization of rice CONIFERALDEHYDE 5-HYDROXYLASE loss-of-function mutants generated with the CRISPR/Cas9 system.	In the present study, to further investigate the effect of suppression of OsCAld5H1 on rice lignin structure, we generated loss-of-function mutants of OsCAld5H1 using the CRISPR/Cas9-mediated genome editing system
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Moreover, exogenous ABA application up-regulates OsCam1-1 (the salt-stress-responsive calmodulin) gene expression, and calmodulin was shown to play a role in the signal transduction cascade in proline accumulation during salt stress
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Moreover, exogenous ABA application up-regulates OsCam1-1 (the salt-stress-responsive calmodulin) gene expression, and calmodulin was shown to play a role in the signal transduction cascade in proline accumulation during salt stress
OsCam1-1	Os03g0319300	LOC_Os03g20370	ABA	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Moreover, exogenous ABA application up-regulates OsCam1-1 (the salt-stress-responsive calmodulin) gene expression, and calmodulin was shown to play a role in the signal transduction cascade in proline accumulation during salt stress
OsCam1-1	Os03g0319300	LOC_Os03g20370	temperature	Heat shock-induced biphasic Ca(2+) signature and OsCaM1-1 nuclear localization mediate downstream signalling in acquisition of thermotolerance in rice (Oryza sativa L.)	Overexpression of OsCaM1-1 induced the expression of Ca(2+) /HS-related AtCBK3, AtPP7, AtHSF and AtHSP at a non-inducing temperature and enhanced intrinsic thermotolerance in transgenic Arabidopsis
OsCam1-1	Os03g0319300	LOC_Os03g20370	starch	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	Under salt stress, the photosynthesis rate in the transgenic rice was slightly lower than in wild type, while sucrose and starch contents were higher, suggesting that energy and carbon metabolism were affected by OsCam1-1 overexpression
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	A previous study has revealed that transgenic rice over-expressing the calmodulin gene OsCam1-1 (LOC_Os03g20370) is more tolerant to salt stress than wild type
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	To elucidate the role of OsCam1-1 in the salt stress response mechanism, downstream components of the OsCam1-1-mediated response were identified and investigated by transcriptome profiling and target identification
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	Transcriptome profiling of transgenic 'Khao Dawk Mali 105' rice over-expressing OsCam1-1 and wild type rice showed that overexpression of OsCam1-1 widely affected the expression of genes involved in several cellular processes under salt stress, including signaling, hormone-mediated regulation, transcription, lipid metabolism, carbohydrate metabolism, secondary metabolism, photosynthesis, glycolysis, tricarboxylic acid (TCA) cycle and glyoxylate cycle
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	Under salt stress, the photosynthesis rate in the transgenic rice was slightly lower than in wild type, while sucrose and starch contents were higher, suggesting that energy and carbon metabolism were affected by OsCam1-1 overexpression
OsCam1-1	Os03g0319300	LOC_Os03g20370	photosynthesis	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	Under salt stress, the photosynthesis rate in the transgenic rice was slightly lower than in wild type, while sucrose and starch contents were higher, suggesting that energy and carbon metabolism were affected by OsCam1-1 overexpression
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt stress	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	A previous study has revealed that transgenic rice over-expressing the calmodulin gene OsCam1-1 (LOC_Os03g20370) is more tolerant to salt stress than wild type
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt stress	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	To elucidate the role of OsCam1-1 in the salt stress response mechanism, downstream components of the OsCam1-1-mediated response were identified and investigated by transcriptome profiling and target identification
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt stress	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	Transcriptome profiling of transgenic 'Khao Dawk Mali 105' rice over-expressing OsCam1-1 and wild type rice showed that overexpression of OsCam1-1 widely affected the expression of genes involved in several cellular processes under salt stress, including signaling, hormone-mediated regulation, transcription, lipid metabolism, carbohydrate metabolism, secondary metabolism, photosynthesis, glycolysis, tricarboxylic acid (TCA) cycle and glyoxylate cycle
OsCam1-1	Os03g0319300	LOC_Os03g20370	salt stress	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	Under salt stress, the photosynthesis rate in the transgenic rice was slightly lower than in wild type, while sucrose and starch contents were higher, suggesting that energy and carbon metabolism were affected by OsCam1-1 overexpression
OsCam1-1	Os03g0319300	LOC_Os03g20370	stress	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	A previous study has revealed that transgenic rice over-expressing the calmodulin gene OsCam1-1 (LOC_Os03g20370) is more tolerant to salt stress than wild type
OsCam1-1	Os03g0319300	LOC_Os03g20370	stress	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	To elucidate the role of OsCam1-1 in the salt stress response mechanism, downstream components of the OsCam1-1-mediated response were identified and investigated by transcriptome profiling and target identification
OsCam1-1	Os03g0319300	LOC_Os03g20370	stress response	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	To elucidate the role of OsCam1-1 in the salt stress response mechanism, downstream components of the OsCam1-1-mediated response were identified and investigated by transcriptome profiling and target identification
OsCam1-1	Os03g0319300	LOC_Os03g20370	sucrose	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	Under salt stress, the photosynthesis rate in the transgenic rice was slightly lower than in wild type, while sucrose and starch contents were higher, suggesting that energy and carbon metabolism were affected by OsCam1-1 overexpression
OsCaML2 |osa-miR1432	Os03g0812400	LOC_Os03g59770	resistance	Inducible Enrichment of Osa-miR1432 Confers Rice Bacterial Blight Resistance through Suppressing OsCaML2.	 Noticeably, OsCaML2 (LOC_Os03g59770) was experimentally confirmed as a target gene of osa-miR1432, and the overexpressing OsCaML2 transgenic plants exhibited compromised resistance to Xoo infestation
OsCaML2 |osa-miR1432	Os03g0812400	LOC_Os03g59770	resistance	Inducible Enrichment of Osa-miR1432 Confers Rice Bacterial Blight Resistance through Suppressing OsCaML2.	 Our results indicate that osa-miR1432 and OsCaML2 were differently responsive to Xoo invasion at the transcriptional level and fine-tune rice resistance to Xoo infection, which may be referable in resistance gene discovery and valuable in the pursuit of improving Xoo resistance in rice breeding
OsCaML2 |osa-miR1432	Os03g0812400	LOC_Os03g59770	breeding	Inducible Enrichment of Osa-miR1432 Confers Rice Bacterial Blight Resistance through Suppressing OsCaML2.	 Our results indicate that osa-miR1432 and OsCaML2 were differently responsive to Xoo invasion at the transcriptional level and fine-tune rice resistance to Xoo infection, which may be referable in resistance gene discovery and valuable in the pursuit of improving Xoo resistance in rice breeding
OsCaML2 |osa-miR1432	Os03g0812400	LOC_Os03g59770	xoo	Inducible Enrichment of Osa-miR1432 Confers Rice Bacterial Blight Resistance through Suppressing OsCaML2.	 Noticeably, OsCaML2 (LOC_Os03g59770) was experimentally confirmed as a target gene of osa-miR1432, and the overexpressing OsCaML2 transgenic plants exhibited compromised resistance to Xoo infestation
OsCaML2 |osa-miR1432	Os03g0812400	LOC_Os03g59770	xoo	Inducible Enrichment of Osa-miR1432 Confers Rice Bacterial Blight Resistance through Suppressing OsCaML2.	 Our results indicate that osa-miR1432 and OsCaML2 were differently responsive to Xoo invasion at the transcriptional level and fine-tune rice resistance to Xoo infection, which may be referable in resistance gene discovery and valuable in the pursuit of improving Xoo resistance in rice breeding
OsCaML2 |osa-miR1432	Os03g0812400	LOC_Os03g59770	Xoo	Inducible Enrichment of Osa-miR1432 Confers Rice Bacterial Blight Resistance through Suppressing OsCaML2.	 Noticeably, OsCaML2 (LOC_Os03g59770) was experimentally confirmed as a target gene of osa-miR1432, and the overexpressing OsCaML2 transgenic plants exhibited compromised resistance to Xoo infestation
OsCaML2 |osa-miR1432	Os03g0812400	LOC_Os03g59770	Xoo	Inducible Enrichment of Osa-miR1432 Confers Rice Bacterial Blight Resistance through Suppressing OsCaML2.	 Our results indicate that osa-miR1432 and OsCaML2 were differently responsive to Xoo invasion at the transcriptional level and fine-tune rice resistance to Xoo infection, which may be referable in resistance gene discovery and valuable in the pursuit of improving Xoo resistance in rice breeding
OsCAND1	Os02g0167700	LOC_Os02g07120	crown root	OsCAND1 is required for crown root emergence in rice	To understand the molecular mechanisms of crown root formation, we isolated a rice mutant defective in crown root emergence designated as Oscand1 (named after the Arabidopsis homologous gene AtCAND1)
OsCAND1	Os02g0167700	LOC_Os02g07120	crown root	OsCAND1 is required for crown root emergence in rice	The defect of visible crown root in the Oscand1 mutant is the result of cessation of the G2/M cell cycle transition in the crown root meristem
OsCAND1	Os02g0167700	LOC_Os02g07120	crown root	OsCAND1 is required for crown root emergence in rice	During crown root primordium development, the expression of OsCAND1 is confined to the root cap after the establishment of fundamental organization
OsCAND1	Os02g0167700	LOC_Os02g07120	crown root	OsCAND1 is required for crown root emergence in rice	Exogenous auxin application can partially rescue the defect of crown root development in Oscand1
OsCAND1	Os02g0167700	LOC_Os02g07120	crown root	OsCAND1 is required for crown root emergence in rice	Taken together, these data show that OsCAND1 is involved in auxin signaling to maintain the G2/M cell cycle transition in crown root meristem and, consequently, the emergence of crown root
OsCAND1	Os02g0167700	LOC_Os02g07120	crown root	OsCAND1 is required for crown root emergence in rice	OsCAND1 is required for crown root emergence in rice
OsCAND1	Os02g0167700	LOC_Os02g07120	root	OsCAND1 is required for crown root emergence in rice	To understand the molecular mechanisms of crown root formation, we isolated a rice mutant defective in crown root emergence designated as Oscand1 (named after the Arabidopsis homologous gene AtCAND1)
OsCAND1	Os02g0167700	LOC_Os02g07120	root	OsCAND1 is required for crown root emergence in rice	The defect of visible crown root in the Oscand1 mutant is the result of cessation of the G2/M cell cycle transition in the crown root meristem
OsCAND1	Os02g0167700	LOC_Os02g07120	root	OsCAND1 is required for crown root emergence in rice	During crown root primordium development, the expression of OsCAND1 is confined to the root cap after the establishment of fundamental organization
OsCAND1	Os02g0167700	LOC_Os02g07120	root	OsCAND1 is required for crown root emergence in rice	Exogenous auxin application can partially rescue the defect of crown root development in Oscand1
OsCAND1	Os02g0167700	LOC_Os02g07120	root	OsCAND1 is required for crown root emergence in rice	Taken together, these data show that OsCAND1 is involved in auxin signaling to maintain the G2/M cell cycle transition in crown root meristem and, consequently, the emergence of crown root
OsCAND1	Os02g0167700	LOC_Os02g07120	root	OsCAND1 is required for crown root emergence in rice	OsCAND1 is required for crown root emergence in rice
OsCAND1	Os02g0167700	LOC_Os02g07120	meristem	OsCAND1 is required for crown root emergence in rice	The defect of visible crown root in the Oscand1 mutant is the result of cessation of the G2/M cell cycle transition in the crown root meristem
OsCAND1	Os02g0167700	LOC_Os02g07120	meristem	OsCAND1 is required for crown root emergence in rice	Taken together, these data show that OsCAND1 is involved in auxin signaling to maintain the G2/M cell cycle transition in crown root meristem and, consequently, the emergence of crown root
OsCAND1	Os02g0167700	LOC_Os02g07120	auxin	OsCAND1 is required for crown root emergence in rice	Exogenous auxin application can partially rescue the defect of crown root development in Oscand1
OsCAND1	Os02g0167700	LOC_Os02g07120	auxin	OsCAND1 is required for crown root emergence in rice	Taken together, these data show that OsCAND1 is involved in auxin signaling to maintain the G2/M cell cycle transition in crown root meristem and, consequently, the emergence of crown root
OsCAND1	Os02g0167700	LOC_Os02g07120	root development	OsCAND1 is required for crown root emergence in rice	Exogenous auxin application can partially rescue the defect of crown root development in Oscand1
OsCAND1	Os02g0167700	LOC_Os02g07120	cell cycle	OsCAND1 is required for crown root emergence in rice	The defect of visible crown root in the Oscand1 mutant is the result of cessation of the G2/M cell cycle transition in the crown root meristem
OsCAND1	Os02g0167700	LOC_Os02g07120	cell cycle	OsCAND1 is required for crown root emergence in rice	Taken together, these data show that OsCAND1 is involved in auxin signaling to maintain the G2/M cell cycle transition in crown root meristem and, consequently, the emergence of crown root
OsCAND1	Os02g0167700	LOC_Os02g07120	crown	OsCAND1 is required for crown root emergence in rice	To understand the molecular mechanisms of crown root formation, we isolated a rice mutant defective in crown root emergence designated as Oscand1 (named after the Arabidopsis homologous gene AtCAND1)
OsCAND1	Os02g0167700	LOC_Os02g07120	crown	OsCAND1 is required for crown root emergence in rice	The defect of visible crown root in the Oscand1 mutant is the result of cessation of the G2/M cell cycle transition in the crown root meristem
OsCAND1	Os02g0167700	LOC_Os02g07120	crown	OsCAND1 is required for crown root emergence in rice	During crown root primordium development, the expression of OsCAND1 is confined to the root cap after the establishment of fundamental organization
OsCAND1	Os02g0167700	LOC_Os02g07120	crown	OsCAND1 is required for crown root emergence in rice	Exogenous auxin application can partially rescue the defect of crown root development in Oscand1
OsCAND1	Os02g0167700	LOC_Os02g07120	crown	OsCAND1 is required for crown root emergence in rice	Taken together, these data show that OsCAND1 is involved in auxin signaling to maintain the G2/M cell cycle transition in crown root meristem and, consequently, the emergence of crown root
OsCAND1	Os02g0167700	LOC_Os02g07120	crown	OsCAND1 is required for crown root emergence in rice	OsCAND1 is required for crown root emergence in rice
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	leaf	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	This study characterizes a rice mutant, pale green leaf (pgl), and isolates the gene PGL by using a map-based cloning approach
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	grain	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	Compared with wild-type plants, pgl exhibits a lower Chl content with a reduced and disorderly thylakoid ultrastructure, which decreases the photosynthesis rate and results in reduced grain yield and quality
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	map-based cloning	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	This study characterizes a rice mutant, pale green leaf (pgl), and isolates the gene PGL by using a map-based cloning approach
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	photosynthesis	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	Compared with wild-type plants, pgl exhibits a lower Chl content with a reduced and disorderly thylakoid ultrastructure, which decreases the photosynthesis rate and results in reduced grain yield and quality
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	grain yield	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	Compared with wild-type plants, pgl exhibits a lower Chl content with a reduced and disorderly thylakoid ultrastructure, which decreases the photosynthesis rate and results in reduced grain yield and quality
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	yield	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	Compared with wild-type plants, pgl exhibits a lower Chl content with a reduced and disorderly thylakoid ultrastructure, which decreases the photosynthesis rate and results in reduced grain yield and quality
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	stress	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	Moreover, pgl is sensitive to heat stress
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	senescence	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	In addition, pgl exhibits premature senescence in both natural and dark-induced conditions and more severe Chl degradation and reactive oxygen species accumulation than does the wild-type
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	quality	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	Compared with wild-type plants, pgl exhibits a lower Chl content with a reduced and disorderly thylakoid ultrastructure, which decreases the photosynthesis rate and results in reduced grain yield and quality
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	reactive oxygen species	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	In addition, pgl exhibits premature senescence in both natural and dark-induced conditions and more severe Chl degradation and reactive oxygen species accumulation than does the wild-type
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	leaf	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice	Thus, knockout of OsCAO1 influenced growth period, leaf development and grain quality characters of rice
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	senescence	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice	Overall, the result suggests that OsCAO1 also plays important roles in chlorophyll degradation and ROS scavenging to regulate both natural and induced rice senescence
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	growth	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice	Thus, knockout of OsCAO1 influenced growth period, leaf development and grain quality characters of rice
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	leaf development	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice	Thus, knockout of OsCAO1 influenced growth period, leaf development and grain quality characters of rice
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	development	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice	In this study, the development of edited lines with pale green leaves by knockout of OsCAO1 gene known as a chlorophyll synthesis process is reported
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	development	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice	Thus, knockout of OsCAO1 influenced growth period, leaf development and grain quality characters of rice
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	grain	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice	Thus, knockout of OsCAO1 influenced growth period, leaf development and grain quality characters of rice
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	quality	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice	Thus, knockout of OsCAO1 influenced growth period, leaf development and grain quality characters of rice
OsCAO1|PGL	Os10g0567400	LOC_Os10g41780	grain quality	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice	Thus, knockout of OsCAO1 influenced growth period, leaf development and grain quality characters of rice
OsCAS	Os04g0165700	LOC_Os04g08350	ethylene	Heterologous expression analyses of rice OsCAS in Arabidopsis and in yeast provide evidence for its roles in cyanide detoxification rather than in cysteine synthesis in vivo	Unlike most of the CAS genes reported from dicots, the transcription of OsCAS is promoted by auxins but suppressed by ethylene
OsCAS	Os04g0165700	LOC_Os04g08350	mitochondria	Heterologous expression analyses of rice OsCAS in Arabidopsis and in yeast provide evidence for its roles in cyanide detoxification rather than in cysteine synthesis in vivo	The subcellular localization of OsCAS was found mostly in the mitochondria by immunogold electron-microscopy
OsCAS	Os04g0165700	LOC_Os04g08350	seedling	Heterologous expression analyses of rice OsCAS in Arabidopsis and in yeast provide evidence for its roles in cyanide detoxification rather than in cysteine synthesis in vivo	Based on a tryptic peptide sequence obtained from a partially purified CAS activity protein preparation in etiolated rice seedlings, the full-length putative rice CAS-encoding cDNA sequence (OsCAS), which is homologous to those O-acetylserine sulphydrylase (OASS) genes, was cloned
OsCAS	Os04g0165700	LOC_Os04g08350	auxin	Heterologous expression analyses of rice OsCAS in Arabidopsis and in yeast provide evidence for its roles in cyanide detoxification rather than in cysteine synthesis in vivo	Unlike most of the CAS genes reported from dicots, the transcription of OsCAS is promoted by auxins but suppressed by ethylene
OsCASP1	Os04g0684300	LOC_Os04g58760	root	OsCASP1 is required for Casparian strip formation at endodermal cells of rice roots for selective uptake of mineral elements.	 OsCASP1 was mainly expressed in the root elongation zone, and the protein encoded was first localized to all side of the plasma membrane of endodermal cells without CS, followed by to the middle of anticlinal side of endodermal cells with CS
OsCASP1	Os04g0684300	LOC_Os04g58760	root	OsCASP1 is required for Casparian strip formation at endodermal cells of rice roots for selective uptake of mineral elements.	 These results indicated that OsCASP1 is required for CS formation at the endodermis and that the CS in rice plays an important role in root selective uptake of mineral elements especially Ca and Si
OsCASP1	Os04g0684300	LOC_Os04g58760	growth	OsCASP1 is required for Casparian strip formation at endodermal cells of rice roots for selective uptake of mineral elements.	 Knockout of OsCASP1 resulted in defect of CS formation at the endodermis and decreased growth under both soil and hydroponic conditions
OsCASP1	Os04g0684300	LOC_Os04g58760	root elongation	OsCASP1 is required for Casparian strip formation at endodermal cells of rice roots for selective uptake of mineral elements.	 OsCASP1 was mainly expressed in the root elongation zone, and the protein encoded was first localized to all side of the plasma membrane of endodermal cells without CS, followed by to the middle of anticlinal side of endodermal cells with CS
OsCASP1	Os04g0684300	LOC_Os04g58760	plasma membrane	OsCASP1 is required for Casparian strip formation at endodermal cells of rice roots for selective uptake of mineral elements.	 OsCASP1 was mainly expressed in the root elongation zone, and the protein encoded was first localized to all side of the plasma membrane of endodermal cells without CS, followed by to the middle of anticlinal side of endodermal cells with CS
OsCASP1	Os04g0684300	LOC_Os04g58760	tolerance	Overexpression of OsCASP1 Improves Calcium Tolerance in Rice	Overexpression of OsCASP1 Improves Calcium Tolerance in Rice
OsCASP1	Os04g0684300	LOC_Os04g58760	tolerance	Overexpression of OsCASP1 Improves Calcium Tolerance in Rice	 Here, we demonstrated that OsCASP1 overexpression enhanced Ca tolerance in rice
OsCASP1	Os04g0684300	LOC_Os04g58760	calcium	Overexpression of OsCASP1 Improves Calcium Tolerance in Rice	Overexpression of OsCASP1 Improves Calcium Tolerance in Rice
OsCASP1	Os04g0684300	LOC_Os04g58760	growth	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.	 Our findings suggest that OsCASP1 could play an important role in nutrient homeostasis and adaptation to the growth environment
OsCASP1	Os04g0684300	LOC_Os04g58760	homeostasis	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.	 Our findings suggest that OsCASP1 could play an important role in nutrient homeostasis and adaptation to the growth environment
OsCASP1	Os04g0684300	LOC_Os04g58760	lateral root	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.
OsCASP1	Os04g0684300	LOC_Os04g58760	lateral root	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.	 Here, we observed the structure of rice primary and small lateral roots (SLRs), particularly the deposition patterns of lignin and suberin in wild type and Oscasp1 mutants
OsCASP1	Os04g0684300	LOC_Os04g58760	lignin	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.	 Here, we observed the structure of rice primary and small lateral roots (SLRs), particularly the deposition patterns of lignin and suberin in wild type and Oscasp1 mutants
OsCASP1	Os04g0684300	LOC_Os04g58760	lignin	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.	 The loss of OsCASP1 function alters the expression of the genes involved in suberin biosynthesis and the deposition of suberin in the endodermis and sclerenchyma and leads to delayed CS formation and uneven lignin deposition in SLRs
OsCASP1	Os04g0684300	LOC_Os04g58760	Casparian strip	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.
OsCASP2	Os08g0101900	LOC_Os08g01160	plasma membrane	OsCASP1 forms complexes with itself and OsCASP2 in rice.	These interactions of OsCASP1 with itself and OsCASP2 at the plasma membrane were confirmed using bimolecular fluorescence complementation (BiFC) in rice protoplasts
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	nitrate	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	Furthermore, noe1 resulted in an increase of hydrogen peroxide (H(2)O(2)) in the leaves, which consequently promoted NO production via the activation of nitrate reductase
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	cell death	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	Here, we report the identification of an NO accumulation mutant, nitric oxide excess1 (noe1), in rice (Oryza sativa), the isolation of the corresponding gene, and the analysis of its role in NO-mediated leaf cell death
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	cell death	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	The removal of excess NO reduced cell death in both leaves and suspension cultures derived from noe1 plants, implicating NO as an important endogenous mediator of H(2)O(2)-induced leaf cell death
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	cell death	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	Reduction of intracellular S-nitrosothiol (SNO) levels, generated by overexpression of rice S-nitrosoglutathione reductase gene (GSNOR1), which regulates global levels of protein S-nitrosylation, alleviated leaf cell death in noe1 plants
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	cell death	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	Thus, S-nitrosylation was also involved in light-dependent leaf cell death in noe1
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	cell death	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	NO targets identified only in noe1 plants included glyceraldehyde 3-phosphate dehydrogenase and thioredoxin, which have been reported to be involved in S-nitrosylation-regulated cell death in animals
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	leaf	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	Here, we report the identification of an NO accumulation mutant, nitric oxide excess1 (noe1), in rice (Oryza sativa), the isolation of the corresponding gene, and the analysis of its role in NO-mediated leaf cell death
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	leaf	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	The removal of excess NO reduced cell death in both leaves and suspension cultures derived from noe1 plants, implicating NO as an important endogenous mediator of H(2)O(2)-induced leaf cell death
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	leaf	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	Reduction of intracellular S-nitrosothiol (SNO) levels, generated by overexpression of rice S-nitrosoglutathione reductase gene (GSNOR1), which regulates global levels of protein S-nitrosylation, alleviated leaf cell death in noe1 plants
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	leaf	Nitric oxide and protein S-nitrosylation are integral to hydrogen peroxide-induced leaf cell death in rice	Thus, S-nitrosylation was also involved in light-dependent leaf cell death in noe1
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	starch	Disruption of LLM9428/OsCATC Represses Starch Metabolism and Confers Enhanced Blast Resistance in Rice.	 Taken together, the current study results revealed a novel role of OsCATC in starch metabolism in addition to validating previously studied functions of CATs
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	immunity	Rice catalase OsCATC is degraded by E3 ligase APIP6 to negatively regulate immunity	Rice catalase OsCATC is degraded by E3 ligase APIP6 to negatively regulate immunity
OsCATC|NOE1|OsCAT3	Os03g0131200	LOC_Os03g03910	catalase	Rice catalase OsCATC is degraded by E3 ligase APIP6 to negatively regulate immunity	Rice catalase OsCATC is degraded by E3 ligase APIP6 to negatively regulate immunity
OsCAX1a	Os01g0557500	LOC_Os01g37690	root	Expression of the vacuolar Ca2+/H+ exchanger, OsCAX1a, in rice: cell and age specificity of expression, and enhancement by Ca2+	OsCAX1a mRNA was induced in roots by high concentrations of Ca(2+)
OsCAX1a	Os01g0557500	LOC_Os01g37690	homeostasis	Expression of the vacuolar Ca2+/H+ exchanger, OsCAX1a, in rice: cell and age specificity of expression, and enhancement by Ca2+	These results suggest that OsCAX1a transports Ca(2+) into vacuoles and is involved in Ca(2+) homeostasis in cells that suffer from high concentrations of Ca(2+)
OsCAX1a	Os01g0557500	LOC_Os01g37690	flower	Expression of the vacuolar Ca2+/H+ exchanger, OsCAX1a, in rice: cell and age specificity of expression, and enhancement by Ca2+	Furthermore, transgenic rice plants transformed with the OsCAX1a promoter fused to beta-glucuronidase showed reporter expression in vascular bundles, stomata, trichomes, steles, flowers, embryos and aleurone layers
OsCAX1a	Os01g0557500	LOC_Os01g37690	vascular bundle	Expression of the vacuolar Ca2+/H+ exchanger, OsCAX1a, in rice: cell and age specificity of expression, and enhancement by Ca2+	Furthermore, transgenic rice plants transformed with the OsCAX1a promoter fused to beta-glucuronidase showed reporter expression in vascular bundles, stomata, trichomes, steles, flowers, embryos and aleurone layers
OsCAX1a	Os01g0557500	LOC_Os01g37690	stomata	Expression of the vacuolar Ca2+/H+ exchanger, OsCAX1a, in rice: cell and age specificity of expression, and enhancement by Ca2+	Furthermore, transgenic rice plants transformed with the OsCAX1a promoter fused to beta-glucuronidase showed reporter expression in vascular bundles, stomata, trichomes, steles, flowers, embryos and aleurone layers
OsCAX1a	Os01g0557500	LOC_Os01g37690	stomata	Expression of the vacuolar Ca2+/H+ exchanger, OsCAX1a, in rice: cell and age specificity of expression, and enhancement by Ca2+	In the case of stomata and trichomes, transcription of OsCAX1a was particularly high in aged organs
OsCAX1a	Os01g0557500	LOC_Os01g37690	panicle	Ca(2+) deficiency triggers panicle degeneration in rice mediated by Ca(2+) /H(+) exchanger OsCAX1a.	 Following, the panicle degeneration gene OsCAX1a was identified in the mutant, which was involved in Ca(2+) transport
OsCAX1a	Os01g0557500	LOC_Os01g37690	panicle	Ca(2+) deficiency triggers panicle degeneration in rice mediated by Ca(2+) /H(+) exchanger OsCAX1a.	 Our results explained the key role of OsCAX1a in Ca(2+) transport and distribution and laid a foundation to further explore the genetic and molecular mechanisms of panicle degeneration in rice
OsCBK	Os03g0366200	LOC_Os03g25070	anther	Molecular and biochemical characterization of a calcium/calmodulin-binding protein kinase from rice	OsCBK is highly expressed in zones of cell division and it is particularly abundant in sporogenous cells of the anther at meiosis
OsCBK	Os03g0366200	LOC_Os03g25070	growth	Molecular and biochemical characterization of a calcium/calmodulin-binding protein kinase from rice	In situ hybridization showed that OsCBK is expressed in reproductive and vegetative tissues of rice and shows temporal and spatial changes during plant growth and development
OsCBK	Os03g0366200	LOC_Os03g25070	meiosis	Molecular and biochemical characterization of a calcium/calmodulin-binding protein kinase from rice	OsCBK is highly expressed in zones of cell division and it is particularly abundant in sporogenous cells of the anther at meiosis
OsCBK	Os03g0366200	LOC_Os03g25070	vegetative	Molecular and biochemical characterization of a calcium/calmodulin-binding protein kinase from rice	In situ hybridization showed that OsCBK is expressed in reproductive and vegetative tissues of rice and shows temporal and spatial changes during plant growth and development
OsCBK	Os03g0366200	LOC_Os03g25070	reproductive	Molecular and biochemical characterization of a calcium/calmodulin-binding protein kinase from rice	In situ hybridization showed that OsCBK is expressed in reproductive and vegetative tissues of rice and shows temporal and spatial changes during plant growth and development
OsCBK	Os03g0366200	LOC_Os03g25070	cell division	Molecular and biochemical characterization of a calcium/calmodulin-binding protein kinase from rice	OsCBK is highly expressed in zones of cell division and it is particularly abundant in sporogenous cells of the anther at meiosis
OsCBL1	Os10g0564800	LOC_Os10g41510	potassium uptake	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex
OsCBL1	Os10g0564800	LOC_Os10g41510	seedlings	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	Here, we report that OsCBL1 also modulates nitrate signaling to regulate rice seedlings growth
OsCBL1	Os10g0564800	LOC_Os10g41510	growth	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.
OsCBL1	Os10g0564800	LOC_Os10g41510	growth	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	Here, we report that OsCBL1 also modulates nitrate signaling to regulate rice seedlings growth
OsCBL1	Os10g0564800	LOC_Os10g41510	growth	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	Overall, our results showed a novel role for OsCBL1 in the regulation of nitrate signaling and nitrate-mediated rice growth
OsCBL1	Os10g0564800	LOC_Os10g41510	seedling	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.
OsCBL1	Os10g0564800	LOC_Os10g41510	nitrate	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.
OsCBL1	Os10g0564800	LOC_Os10g41510	nitrate	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	Here, we report that OsCBL1 also modulates nitrate signaling to regulate rice seedlings growth
OsCBL1	Os10g0564800	LOC_Os10g41510	nitrate	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	Overall, our results showed a novel role for OsCBL1 in the regulation of nitrate signaling and nitrate-mediated rice growth
OsCBL1	Os10g0564800	LOC_Os10g41510	calcium	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.
OsCBL1	Os10g0564800	LOC_Os10g41510	nitrogen	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	Here, we found that a protein OsCBL1 (Calcineurin B-like protein 1) is involved in the regulation of nitrogen and phosphorus signaling in rice
OsCBL1	Os10g0564800	LOC_Os10g41510	nitrogen	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	Compared with the wild type, knockdown of OsCBL1 inhibit the growth of rice to the same extent, when nitrogen is deficient or nitrogen is present in the form of ammonium-nitrate mixture
OsCBL1	Os10g0564800	LOC_Os10g41510	nitrogen	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	These results suggest that OsCBL1 may be involved in the response of rice to nitrogen and phosphorus nutrition in the environment, as well as the regulation of rice growth by environmental nutrition
OsCBL1	Os10g0564800	LOC_Os10g41510	growth	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses
OsCBL1	Os10g0564800	LOC_Os10g41510	growth	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	Compared with the wild type, knockdown of OsCBL1 inhibit the growth of rice to the same extent, when nitrogen is deficient or nitrogen is present in the form of ammonium-nitrate mixture
OsCBL1	Os10g0564800	LOC_Os10g41510	growth	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	These results suggest that OsCBL1 may be involved in the response of rice to nitrogen and phosphorus nutrition in the environment, as well as the regulation of rice growth by environmental nutrition
OsCBL1	Os10g0564800	LOC_Os10g41510	seedling	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses
OsCBL1	Os10g0564800	LOC_Os10g41510	nitrate	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses
OsCBL1	Os10g0564800	LOC_Os10g41510	phosphate	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses
OsCBL1	Os10g0564800	LOC_Os10g41510	seedling growth	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses
OsCBL1	Os10g0564800	LOC_Os10g41510	phosphorus	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	Here, we found that a protein OsCBL1 (Calcineurin B-like protein 1) is involved in the regulation of nitrogen and phosphorus signaling in rice
OsCBL1	Os10g0564800	LOC_Os10g41510	phosphorus	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses	These results suggest that OsCBL1 may be involved in the response of rice to nitrogen and phosphorus nutrition in the environment, as well as the regulation of rice growth by environmental nutrition
OsCBL10	Os01g0711500	LOC_Os01g51420	tolerance	Natural variation in the promoter of rice Calcineurin B-like Protein10 (OsCBL10) affects flooding tolerance during seed germination among rice subspecies.	We observed that variations in the OsCBL10 promoter sequences in these two cultivars might contribute to this divergence in flooding tolerance
OsCBL10	Os01g0711500	LOC_Os01g51420	stress	Natural variation in the promoter of rice Calcineurin B-like Protein10 (OsCBL10) affects flooding tolerance during seed germination among rice subspecies.	In summary, our results suggest that the adaptation to flooding stress during rice germination is associated with two different OsCBL10 promoters, which in turn affect OsCBL10 expression in different cultivars and negatively affect OsCIPK15 protein accumulation and its downstream cascade
OsCBL2	Os12g0597000	LOC_Os12g40510	ga	A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function	Only one rice CBL gene, OsCBL2, is up-regulated by GA in the aleurone layer
OsCBL5	Os01g0598200	LOC_Os01g41510	spikelet	OsCBL5-CIPK1-PP23 module enhances rice grain size and weight through the gibberellin pathway.	 We further revealed that OsCBL5 promotes grain size by affecting cell expansion in the spikelet hull
OsCBL5	Os01g0598200	LOC_Os01g41510	grain	OsCBL5-CIPK1-PP23 module enhances rice grain size and weight through the gibberellin pathway.	 In this study, we report that OsCBL5 encodes a calcineurin B subunit protein that significantly promotes grain size and weight
OsCBL5	Os01g0598200	LOC_Os01g41510	grain	OsCBL5-CIPK1-PP23 module enhances rice grain size and weight through the gibberellin pathway.	 We further revealed that OsCBL5 promotes grain size by affecting cell expansion in the spikelet hull
OsCBL5	Os01g0598200	LOC_Os01g41510	grain size	OsCBL5-CIPK1-PP23 module enhances rice grain size and weight through the gibberellin pathway.	 In this study, we report that OsCBL5 encodes a calcineurin B subunit protein that significantly promotes grain size and weight
OsCBL5	Os01g0598200	LOC_Os01g41510	grain size	OsCBL5-CIPK1-PP23 module enhances rice grain size and weight through the gibberellin pathway.	 We further revealed that OsCBL5 promotes grain size by affecting cell expansion in the spikelet hull
OsCBL5	Os01g0598200	LOC_Os01g41510	cell expansion	OsCBL5-CIPK1-PP23 module enhances rice grain size and weight through the gibberellin pathway.	 We further revealed that OsCBL5 promotes grain size by affecting cell expansion in the spikelet hull
OsCBL8	Os02g0291400	LOC_Os02g18930	drought	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	By evaluation of the tolerance to 150 mmol/L NaCl, 20% PEG6000 and low temperature treatments, and relevant physiological indices, 8F12, a sense transgenic line with high salt tolerance, and 8R14, an antisense transgenic line with high drought tolerance, were obtained, which suggests that the OsCBL8 gene is involved in the response of rice to abiotic stresses
OsCBL8	Os02g0291400	LOC_Os02g18930	salt stress	Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses	The OsCBL8 transgenic rice seedlings showed more tolerance to salt stress than non-transgenic seedlings
OsCBL8	Os02g0291400	LOC_Os02g18930	seed	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	Such up- and down-regulation of the OsCBL8 gene in these transgenic lines had little effects on main agronomic traits, but significantly decreased the number of filled grains per panicle and seed setting rate in some of transgenic lines
OsCBL8	Os02g0291400	LOC_Os02g18930	grains per panicle	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	Such up- and down-regulation of the OsCBL8 gene in these transgenic lines had little effects on main agronomic traits, but significantly decreased the number of filled grains per panicle and seed setting rate in some of transgenic lines
OsCBL8	Os02g0291400	LOC_Os02g18930	temperature	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	By evaluation of the tolerance to 150 mmol/L NaCl, 20% PEG6000 and low temperature treatments, and relevant physiological indices, 8F12, a sense transgenic line with high salt tolerance, and 8R14, an antisense transgenic line with high drought tolerance, were obtained, which suggests that the OsCBL8 gene is involved in the response of rice to abiotic stresses
OsCBL8	Os02g0291400	LOC_Os02g18930	salt	Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses	The OsCBL8 transgenic rice seedlings showed more tolerance to salt stress than non-transgenic seedlings
OsCBL8	Os02g0291400	LOC_Os02g18930	abiotic stress	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	By evaluation of the tolerance to 150 mmol/L NaCl, 20% PEG6000 and low temperature treatments, and relevant physiological indices, 8F12, a sense transgenic line with high salt tolerance, and 8R14, an antisense transgenic line with high drought tolerance, were obtained, which suggests that the OsCBL8 gene is involved in the response of rice to abiotic stresses
OsCBL8	Os02g0291400	LOC_Os02g18930	drought tolerance	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	By evaluation of the tolerance to 150 mmol/L NaCl, 20% PEG6000 and low temperature treatments, and relevant physiological indices, 8F12, a sense transgenic line with high salt tolerance, and 8R14, an antisense transgenic line with high drought tolerance, were obtained, which suggests that the OsCBL8 gene is involved in the response of rice to abiotic stresses
OsCBL8	Os02g0291400	LOC_Os02g18930	grain	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	Such up- and down-regulation of the OsCBL8 gene in these transgenic lines had little effects on main agronomic traits, but significantly decreased the number of filled grains per panicle and seed setting rate in some of transgenic lines
OsCBL8	Os02g0291400	LOC_Os02g18930	salt	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	By evaluation of the tolerance to 150 mmol/L NaCl, 20% PEG6000 and low temperature treatments, and relevant physiological indices, 8F12, a sense transgenic line with high salt tolerance, and 8R14, an antisense transgenic line with high drought tolerance, were obtained, which suggests that the OsCBL8 gene is involved in the response of rice to abiotic stresses
OsCBL8	Os02g0291400	LOC_Os02g18930	salt tolerance	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	By evaluation of the tolerance to 150 mmol/L NaCl, 20% PEG6000 and low temperature treatments, and relevant physiological indices, 8F12, a sense transgenic line with high salt tolerance, and 8R14, an antisense transgenic line with high drought tolerance, were obtained, which suggests that the OsCBL8 gene is involved in the response of rice to abiotic stresses
OsCBL8	Os02g0291400	LOC_Os02g18930	seedling	Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses	The OsCBL8 transgenic rice seedlings showed more tolerance to salt stress than non-transgenic seedlings
OsCBL8	Os02g0291400	LOC_Os02g18930	panicle	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice	Such up- and down-regulation of the OsCBL8 gene in these transgenic lines had little effects on main agronomic traits, but significantly decreased the number of filled grains per panicle and seed setting rate in some of transgenic lines
OsCBL8	Os02g0291400	LOC_Os02g18930	plasma membrane	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Moreover, Calcineurin B-like protein 7 (OsCBL7) and OsCBL8 interact with OsCIPK7 specifically on the plasma membrane
OsCBL8	Os02g0291400	LOC_Os02g18930	growth	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	 This study found that OsCBL8 negatively regulated rice seed germination and seedling growth by interacting with OsCIPK17 with overexpression and gene editing mutant plants as materials combining plant phenotype, physiological indicators and transcriptome sequencing
OsCBL8	Os02g0291400	LOC_Os02g18930	growth	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	 Our work reveals a unique signaling pathway, wherein OsCBL8 interacts with OsCIPK17 and provides rice with multiple resistance while also regulating seedling growth
OsCBL8	Os02g0291400	LOC_Os02g18930	resistance	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	 Our work reveals a unique signaling pathway, wherein OsCBL8 interacts with OsCIPK17 and provides rice with multiple resistance while also regulating seedling growth
OsCBL8	Os02g0291400	LOC_Os02g18930	seedling	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	 This study found that OsCBL8 negatively regulated rice seed germination and seedling growth by interacting with OsCIPK17 with overexpression and gene editing mutant plants as materials combining plant phenotype, physiological indicators and transcriptome sequencing
OsCBL8	Os02g0291400	LOC_Os02g18930	seedling	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	 Our work reveals a unique signaling pathway, wherein OsCBL8 interacts with OsCIPK17 and provides rice with multiple resistance while also regulating seedling growth
OsCBL8	Os02g0291400	LOC_Os02g18930	seed	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	 This study found that OsCBL8 negatively regulated rice seed germination and seedling growth by interacting with OsCIPK17 with overexpression and gene editing mutant plants as materials combining plant phenotype, physiological indicators and transcriptome sequencing
OsCBL8	Os02g0291400	LOC_Os02g18930	seed germination	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	 This study found that OsCBL8 negatively regulated rice seed germination and seedling growth by interacting with OsCIPK17 with overexpression and gene editing mutant plants as materials combining plant phenotype, physiological indicators and transcriptome sequencing
OsCBL8	Os02g0291400	LOC_Os02g18930	seedling growth	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	 This study found that OsCBL8 negatively regulated rice seed germination and seedling growth by interacting with OsCIPK17 with overexpression and gene editing mutant plants as materials combining plant phenotype, physiological indicators and transcriptome sequencing
OsCBL8	Os02g0291400	LOC_Os02g18930	seedling growth	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	 Our work reveals a unique signaling pathway, wherein OsCBL8 interacts with OsCIPK17 and provides rice with multiple resistance while also regulating seedling growth
OsCBM1	None	LOC_Os09g19380	growth	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 OsCBM1 physically interacts with OsRbohA, a NADPH oxidase, and the expression of OsCBM1 in osrbohA, an OsRbohA-knockout mutant, is significantly downregulated under both normal growth and drought stress conditions
OsCBM1	None	LOC_Os09g19380	tolerance	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 Overexpression of OsCBM1 increased drought tolerance and reactive oxygen species production in rice, whereas the knockdown of the gene decreased them
OsCBM1	None	LOC_Os09g19380	tolerance	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 All these results suggest that OsCBM1 participates in NADPH oxidase-mediated ROS production by interacting with OsRbohA and OsRacGEF1, contributing to drought stress tolerance of rice
OsCBM1	None	LOC_Os09g19380	stress	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 OsCBM1 physically interacts with OsRbohA, a NADPH oxidase, and the expression of OsCBM1 in osrbohA, an OsRbohA-knockout mutant, is significantly downregulated under both normal growth and drought stress conditions
OsCBM1	None	LOC_Os09g19380	stress	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 All these results suggest that OsCBM1 participates in NADPH oxidase-mediated ROS production by interacting with OsRbohA and OsRacGEF1, contributing to drought stress tolerance of rice
OsCBM1	None	LOC_Os09g19380	stress tolerance	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 All these results suggest that OsCBM1 participates in NADPH oxidase-mediated ROS production by interacting with OsRbohA and OsRacGEF1, contributing to drought stress tolerance of rice
OsCBM1	None	LOC_Os09g19380	drought	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 Overexpression of OsCBM1 increased drought tolerance and reactive oxygen species production in rice, whereas the knockdown of the gene decreased them
OsCBM1	None	LOC_Os09g19380	drought	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 OsCBM1 physically interacts with OsRbohA, a NADPH oxidase, and the expression of OsCBM1 in osrbohA, an OsRbohA-knockout mutant, is significantly downregulated under both normal growth and drought stress conditions
OsCBM1	None	LOC_Os09g19380	drought	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 All these results suggest that OsCBM1 participates in NADPH oxidase-mediated ROS production by interacting with OsRbohA and OsRacGEF1, contributing to drought stress tolerance of rice
OsCBM1	None	LOC_Os09g19380	drought tolerance	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 Overexpression of OsCBM1 increased drought tolerance and reactive oxygen species production in rice, whereas the knockdown of the gene decreased them
OsCBM1	None	LOC_Os09g19380	plasma membrane	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 OsCBM1 is localized in both the endoplasmic reticulum and plasma membrane
OsCBM1	None	LOC_Os09g19380	drought stress	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 OsCBM1 physically interacts with OsRbohA, a NADPH oxidase, and the expression of OsCBM1 in osrbohA, an OsRbohA-knockout mutant, is significantly downregulated under both normal growth and drought stress conditions
OsCBM1	None	LOC_Os09g19380	drought stress	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 All these results suggest that OsCBM1 participates in NADPH oxidase-mediated ROS production by interacting with OsRbohA and OsRacGEF1, contributing to drought stress tolerance of rice
OsCBM1	None	LOC_Os09g19380	reactive oxygen species	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH Oxidase-Mediated ROS Production.	 Overexpression of OsCBM1 increased drought tolerance and reactive oxygen species production in rice, whereas the knockdown of the gene decreased them
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	leaf	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Transgenic tobac-co seedlings over-expressing OsCBSCBSPB4 were found to exhibit better growth in terms of delayed leaf senescence, profuse root growth and increased biomass in contrast to the wild-type seedlings when subjected to salinity, dehydration, oxidative and extreme temperature treatments
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	leaf senescence	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Transgenic tobac-co seedlings over-expressing OsCBSCBSPB4 were found to exhibit better growth in terms of delayed leaf senescence, profuse root growth and increased biomass in contrast to the wild-type seedlings when subjected to salinity, dehydration, oxidative and extreme temperature treatments
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	seedlings	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Transgenic tobac-co seedlings over-expressing OsCBSCBSPB4 were found to exhibit better growth in terms of delayed leaf senescence, profuse root growth and increased biomass in contrast to the wild-type seedlings when subjected to salinity, dehydration, oxidative and extreme temperature treatments
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	root	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Transgenic tobac-co seedlings over-expressing OsCBSCBSPB4 were found to exhibit better growth in terms of delayed leaf senescence, profuse root growth and increased biomass in contrast to the wild-type seedlings when subjected to salinity, dehydration, oxidative and extreme temperature treatments
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	temperature	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Transgenic tobac-co seedlings over-expressing OsCBSCBSPB4 were found to exhibit better growth in terms of delayed leaf senescence, profuse root growth and increased biomass in contrast to the wild-type seedlings when subjected to salinity, dehydration, oxidative and extreme temperature treatments
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	growth	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Transgenic tobac-co seedlings over-expressing OsCBSCBSPB4 were found to exhibit better growth in terms of delayed leaf senescence, profuse root growth and increased biomass in contrast to the wild-type seedlings when subjected to salinity, dehydration, oxidative and extreme temperature treatments
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	oxidative	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Transgenic tobac-co seedlings over-expressing OsCBSCBSPB4 were found to exhibit better growth in terms of delayed leaf senescence, profuse root growth and increased biomass in contrast to the wild-type seedlings when subjected to salinity, dehydration, oxidative and extreme temperature treatments
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	abiotic stress	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	abiotic stress	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	We show that OsCBSCBSPB4 encodes a nucleo-cytoplasmic protein whose expression is induced in response to various abiotic stress conditions in salt-sensitive IR64 and salt-tolerant Pokkali rice cultivars
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	abiotic stress	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Our results suggest that OsCBSCBSPB4 is involved in abiotic stress response and is a potential candidate for raising multiple abiotic stress tolerant plants
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	stress	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	stress	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	We show that OsCBSCBSPB4 encodes a nucleo-cytoplasmic protein whose expression is induced in response to various abiotic stress conditions in salt-sensitive IR64 and salt-tolerant Pokkali rice cultivars
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	stress	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Our results suggest that OsCBSCBSPB4 is involved in abiotic stress response and is a potential candidate for raising multiple abiotic stress tolerant plants
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	biotic stress	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	biotic stress	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	We show that OsCBSCBSPB4 encodes a nucleo-cytoplasmic protein whose expression is induced in response to various abiotic stress conditions in salt-sensitive IR64 and salt-tolerant Pokkali rice cultivars
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	biotic stress	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Our results suggest that OsCBSCBSPB4 is involved in abiotic stress response and is a potential candidate for raising multiple abiotic stress tolerant plants
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	biomass	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Transgenic tobac-co seedlings over-expressing OsCBSCBSPB4 were found to exhibit better growth in terms of delayed leaf senescence, profuse root growth and increased biomass in contrast to the wild-type seedlings when subjected to salinity, dehydration, oxidative and extreme temperature treatments
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	stress tolerance	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.
OsCBSCBSPB4	Os12g0169400	LOC_Os12g07190	stress response	OsCBSCBSPB4 is a Two Cystathionine Synthase Domain-containing Protein from Rice that Functions in Abiotic Stress Tolerance.	Our results suggest that OsCBSCBSPB4 is involved in abiotic stress response and is a potential candidate for raising multiple abiotic stress tolerant plants
OsCBSX3	Os02g0818000	LOC_Os02g57280	resistance	Over-Expression of Rice CBS Domain Containing Protein, OsCBSX3, Confers Rice Resistance to Magnaporthe oryzae Inoculation.	The plants of homozygous T3 transgenic rice lines of over-expressing OsCBSX3 exhibit significant enhanced resistance to M
OsCBSX3	Os02g0818000	LOC_Os02g57280	resistance	Over-Expression of Rice CBS Domain Containing Protein, OsCBSX3, Confers Rice Resistance to Magnaporthe oryzae Inoculation.	These results suggest that OsCBSX3 acts as a positive regulator in resistance of rice to M
OsCBSX3	Os02g0818000	LOC_Os02g57280	plasma membrane	Over-Expression of Rice CBS Domain Containing Protein, OsCBSX3, Confers Rice Resistance to Magnaporthe oryzae Inoculation.	OsCBSX3 is exclusively localized to the plasma membrane by transient expression of OsCBSX3 fused to green fluorescent protein (GFP) through approach of Agrobacterium infiltration in Nicotiana benthamiana leaves
OsCBSX3	Os02g0818000	LOC_Os02g57280	immunity	Over-Expression of Rice CBS Domain Containing Protein, OsCBSX3, Confers Rice Resistance to Magnaporthe oryzae Inoculation.	Consistently, the over-expression of OsCBSX3 enhances the transcript levels of immunity associated marker genes including PR1a, PR1b, PR5, AOS2, PAL, NH1, and OsWRKY13 in plants inoculated with M
OsCBSX4	Os03g0737000	LOC_Os03g52690	salinity	Overexpression of rice CBS domain containing protein improves salinity, oxidative, and heavy metal tolerance in transgenic tobacco	Transgenic tobacco plants overexpressing OsCBSX4 exhibited improved tolerance toward salinity, heavy metal, and oxidative stress
OsCBSX4	Os03g0737000	LOC_Os03g52690	oxidative	Overexpression of rice CBS domain containing protein improves salinity, oxidative, and heavy metal tolerance in transgenic tobacco	Transgenic tobacco plants overexpressing OsCBSX4 exhibited improved tolerance toward salinity, heavy metal, and oxidative stress
OsCBSX4	Os03g0737000	LOC_Os03g52690	abiotic stress	Overexpression of rice CBS domain containing protein improves salinity, oxidative, and heavy metal tolerance in transgenic tobacco	OsCBSX4 overexpressing transgenic plants exhibit higher abiotic stress tolerance than WT plants suggesting its role in abiotic stress tolerance in plants
OsCBT	Os07g0490200	LOC_Os07g30774	growth	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice	The oscbt-1 mutant exhibits reduced levels of OsCBT transcripts and no significant morphological changes compared to wild-type plant although the growth of the mutant is stunted
OsCBT	Os07g0490200	LOC_Os07g30774	transcription factor	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice
OsCBT	Os07g0490200	LOC_Os07g30774	defense response	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice
OsCBT	Os07g0490200	LOC_Os07g30774	leaf	Isolation of a calmodulin-binding transcription factor from rice (Oryza sativa L.)	OsCBT was able to bind this sequence and activate beta-glucuronidase reporter gene expression driven by a minimal promoter containing tandem repeats of these sequences in Arabidopsis leaf protoplasts
OsCBT	Os07g0490200	LOC_Os07g30774	defense	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice	Taken together, the results support an idea that OsCBT might act as a negative regulator on plant defense
OsCBT	Os07g0490200	LOC_Os07g30774	defense	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice
OsCBT	Os07g0490200	LOC_Os07g30774	transcription factor	Isolation of a calmodulin-binding transcription factor from rice (Oryza sativa L.)	This factor, which we have designated OsCBT (Oryza sativa CaM-binding transcription factor), has structural features similar to Arabidopsis AtSRs/AtCAMTAs and encodes a 103-kDa protein because it contains a CG-1 homology DNA-binding domain, three ankyrin repeats, a putative transcriptional activation domain, and five putative CaM-binding motifs
OsCc1	Os05g0420600	LOC_Os05g34770	root	High-level and ubiquitous expression of the rice cytochrome c gene OsCc1 and its promoter activity in transgenic plants provides a useful promoter for transgenesis of monocots	Large amounts of OsCc1 transcripts are found in the roots, calli, and suspension cells, but relatively lower in mature leaves, demonstrating its higher levels of expression in non-photosynthetic tissues
OsCc1	Os05g0420600	LOC_Os05g34770	root	High-level and ubiquitous expression of the rice cytochrome c gene OsCc1 and its promoter activity in transgenic plants provides a useful promoter for transgenesis of monocots	OsCc1 promoter directs expression in virtually all organs of transgenic plants including roots, leaves, calli, embryos, and suspension cells, showing a particularly high activity in calli and roots
OsCc1	Os05g0420600	LOC_Os05g34770	root	High-level and ubiquitous expression of the rice cytochrome c gene OsCc1 and its promoter activity in transgenic plants provides a useful promoter for transgenesis of monocots	Activity of the OsCc1 promoter was 3-fold higher than Act1 in calli and roots and comparable with RbcS in leaves, representing a useful alternative to the maize (Zea mays) Ubi1 and the rice Act1 promoters for transgene expression in monocots
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	nitrogen	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	transcription factor	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	root	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	root	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 Compared to the wild-type (WT), nhd1 and osamt1;3 mutants showed a similar decrease in root growth and N uptake under low NH4+ supply, while nhd1 and osnrt2
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	root	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 The defects of nhd1 mutants in NH4+ uptake and root growth response to various N supplies were restored by overexpression of OsAMT1;3 or OsNRT2
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	growth	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	growth	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 Compared to the wild-type (WT), nhd1 and osamt1;3 mutants showed a similar decrease in root growth and N uptake under low NH4+ supply, while nhd1 and osnrt2
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	growth	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 The defects of nhd1 mutants in NH4+ uptake and root growth response to various N supplies were restored by overexpression of OsAMT1;3 or OsNRT2
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	growth	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 However, when grown in a paddy field with low N availability, nhd1 mutants accumulated more N and achieved a higher N uptake efficiency (NUpE) due to the delayed flowering time and prolonged growth period
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	transporter	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 Here, we show that Nhd1 can directly activate the transcription of the high-affinity ammonium (NH4+) transporter 1;3 (OsAMT1;3) and the dual affinity nitrate (NO3-) transporter 2
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	flowering time	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 However, when grown in a paddy field with low N availability, nhd1 mutants accumulated more N and achieved a higher N uptake efficiency (NUpE) due to the delayed flowering time and prolonged growth period
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	nitrate	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 Here, we show that Nhd1 can directly activate the transcription of the high-affinity ammonium (NH4+) transporter 1;3 (OsAMT1;3) and the dual affinity nitrate (NO3-) transporter 2
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	flowering	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 However, when grown in a paddy field with low N availability, nhd1 mutants accumulated more N and achieved a higher N uptake efficiency (NUpE) due to the delayed flowering time and prolonged growth period
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	root growth	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	root growth	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 Compared to the wild-type (WT), nhd1 and osamt1;3 mutants showed a similar decrease in root growth and N uptake under low NH4+ supply, while nhd1 and osnrt2
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	root growth	The rice transcription factor Nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	 The defects of nhd1 mutants in NH4+ uptake and root growth response to various N supplies were restored by overexpression of OsAMT1;3 or OsNRT2
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	tolerance	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	 Together, our findings illustrate that OsCCA1 confers multiple abiotic stress tolerance likely by orchestrating ABA signaling, which links the circadian clock with ABA signaling in rice
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	abiotic stress	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	 Together, our findings illustrate that OsCCA1 confers multiple abiotic stress tolerance likely by orchestrating ABA signaling, which links the circadian clock with ABA signaling in rice
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	ABA	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	 Consistently, oscca1 null mutants generated via genome editing displayed enhanced sensitivities to ABA signaling
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	ABA	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	 Together, our findings illustrate that OsCCA1 confers multiple abiotic stress tolerance likely by orchestrating ABA signaling, which links the circadian clock with ABA signaling in rice
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	stress	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	 Together, our findings illustrate that OsCCA1 confers multiple abiotic stress tolerance likely by orchestrating ABA signaling, which links the circadian clock with ABA signaling in rice
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	biotic stress	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	 Together, our findings illustrate that OsCCA1 confers multiple abiotic stress tolerance likely by orchestrating ABA signaling, which links the circadian clock with ABA signaling in rice
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	stress tolerance	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	 Together, our findings illustrate that OsCCA1 confers multiple abiotic stress tolerance likely by orchestrating ABA signaling, which links the circadian clock with ABA signaling in rice
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	 ABA 	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	 Consistently, oscca1 null mutants generated via genome editing displayed enhanced sensitivities to ABA signaling
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	 ABA 	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	 Together, our findings illustrate that OsCCA1 confers multiple abiotic stress tolerance likely by orchestrating ABA signaling, which links the circadian clock with ABA signaling in rice
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	domestication	Natural alleles of CIRCADIAN CLOCK ASSOCIATED1 contribute to rice cultivation by fine-tuning flowering time.	 Taken together, our results demonstrate that OsCCA1 is a likely domestication locus that has contributed to the geographic adaptation and expansion of cultivated rice
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	floral	Natural alleles of CIRCADIAN CLOCK ASSOCIATED1 contribute to rice cultivation by fine-tuning flowering time.	 In the japonica cultivar &#x27;Dongjin&#x27;, a T-DNA insertion in OsCCA1a resulted in late flowering under long-day and short-day conditions, indicating that OsCCA1 is a floral inducer
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	flowering	Natural alleles of CIRCADIAN CLOCK ASSOCIATED1 contribute to rice cultivation by fine-tuning flowering time.	 In the japonica cultivar &#x27;Dongjin&#x27;, a T-DNA insertion in OsCCA1a resulted in late flowering under long-day and short-day conditions, indicating that OsCCA1 is a floral inducer
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	leaf	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Leaf RNA-seq analysis indicated that mutation of Nhd1 dramatically altered expression of the genes linked to starch and sucrose metabolism, circadian rhythm, and amino acid metabolic pathways
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	growth	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Knockout of Nhd1 suppressed OsSUT1 expression, and both nhd1 and ossut1 mutants showed similar shorter height, and lower shoot biomass and sucrose concentration in comparison with the wild type, while overexpression of OsSUT1 can restore the defective sucrose transport and partially ameliorate the reduced growth of nhd1 mutants
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	shoot	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Knockout of Nhd1 suppressed OsSUT1 expression, and both nhd1 and ossut1 mutants showed similar shorter height, and lower shoot biomass and sucrose concentration in comparison with the wild type, while overexpression of OsSUT1 can restore the defective sucrose transport and partially ameliorate the reduced growth of nhd1 mutants
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	starch	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Leaf RNA-seq analysis indicated that mutation of Nhd1 dramatically altered expression of the genes linked to starch and sucrose metabolism, circadian rhythm, and amino acid metabolic pathways
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	photosynthesis	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Here, we report that knockout of Nhd1 in rice reduced the rate of photosynthesis and the sucrose ratio of sheaths to blades, but increased the total C to N ratio and free amino acids
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	transporter	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	biomass	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Knockout of Nhd1 suppressed OsSUT1 expression, and both nhd1 and ossut1 mutants showed similar shorter height, and lower shoot biomass and sucrose concentration in comparison with the wild type, while overexpression of OsSUT1 can restore the defective sucrose transport and partially ameliorate the reduced growth of nhd1 mutants
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Here, we report that knockout of Nhd1 in rice reduced the rate of photosynthesis and the sucrose ratio of sheaths to blades, but increased the total C to N ratio and free amino acids
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Leaf RNA-seq analysis indicated that mutation of Nhd1 dramatically altered expression of the genes linked to starch and sucrose metabolism, circadian rhythm, and amino acid metabolic pathways
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 We identified that Nhd1 can directly activate the transcriptional expression of sucrose transporter-1 (OsSUT1)
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Knockout of Nhd1 suppressed OsSUT1 expression, and both nhd1 and ossut1 mutants showed similar shorter height, and lower shoot biomass and sucrose concentration in comparison with the wild type, while overexpression of OsSUT1 can restore the defective sucrose transport and partially ameliorate the reduced growth of nhd1 mutants
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose transporter	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose transporter	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 We identified that Nhd1 can directly activate the transcriptional expression of sucrose transporter-1 (OsSUT1)
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose transport	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose transport	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 We identified that Nhd1 can directly activate the transcriptional expression of sucrose transporter-1 (OsSUT1)
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	sucrose transport	Rice circadian clock regulator Nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	 Knockout of Nhd1 suppressed OsSUT1 expression, and both nhd1 and ossut1 mutants showed similar shorter height, and lower shoot biomass and sucrose concentration in comparison with the wild type, while overexpression of OsSUT1 can restore the defective sucrose transport and partially ameliorate the reduced growth of nhd1 mutants
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	resistance	Multi-omics analyses reveal the crosstalk between the circadian clock and the response to herbicide application in Oryza sativa.	 Interestingly, we identified significant OsCCA1 binding peaks in the promoter regions of four herbicide resistance genes, including OsCYP81A12, OsCYP81E22, OsCYP76C2, and OsCYP76C4
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	herbicide resistance	Multi-omics analyses reveal the crosstalk between the circadian clock and the response to herbicide application in Oryza sativa.	 Interestingly, we identified significant OsCCA1 binding peaks in the promoter regions of four herbicide resistance genes, including OsCYP81A12, OsCYP81E22, OsCYP76C2, and OsCYP76C4
OsCCA1|Nhd1	Os08g0157600	LOC_Os08g06110	herbicide	Multi-omics analyses reveal the crosstalk between the circadian clock and the response to herbicide application in Oryza sativa.	 Interestingly, we identified significant OsCCA1 binding peaks in the promoter regions of four herbicide resistance genes, including OsCYP81A12, OsCYP81E22, OsCYP76C2, and OsCYP76C4
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	root	A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input	Although Oryza sativa CCaMK (OsCCaMK) is required for fungal accommodation in rice roots, little is known about the role of OsCCaMK in rice symbiosis with bacteria
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	root	A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input	Thus, CH4 oxidation and N2 fixation were simultaneously activated in the root zone of WT rice in the LN field and both processes are likely controlled by OsCCaMK
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	defense	OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice	In the present study, the role of rice CCaMK, OsDMI3, in ABA-induced antioxidant defense was investigated in leaves of rice (Oryza sativa) plants
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	defense	OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice	Our data reveal that OsDMI3 is an important component in ABA-induced antioxidant defense in rice
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	defense	OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice	OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	ABA	OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice	ABA treatment induced the expression of OsDMI3 and OsMPK1 and the activities of OsDMI3 and OsMPK1 in rice leaves
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	ABA	OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice	Our data indicate that there exists a cross-talk between OsDMI3 and OsMPK1 in ABA signalling, in which OsDMI3 functions upstream of OsMPK1 to regulate the activities of antioxidant enzymes and the production of H2 O2 in rice
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	oxidative	OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice	Further, the oxidative damage induced by higher concentrations of PEG and H(2)O(2) was aggravated in the mutant of OsDMI3
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	ethylene	OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice	Treatments with ABA, H(2)O(2), and polyethylene glycol (PEG) induced the expression of OsDMI3 and the activity of OsDMI3, and H(2)O(2) is required for the ABA-induced increases in the expression and the activity of OsDMI3 under water stress
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	nitrogen	A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input	Here, we report the effect of a Tos17-induced OsCCaMK mutant (NE1115) on CH4 flux in low-nitrogen (LN) and standard-nitrogen (SN) paddy fields compared with wild-type (WT) Nipponbare
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	ABA	OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice	Moreover, the analysis of the RNAi silencing of OsDMI3 in protoplasts and the mutant of OsDMI3 showed that higher levels of H(2)O(2) accumulation require OsDMI3 activation in ABA signaling, but the initial H(2)O(2) production induced by ABA is not dependent on the activation of OsDMI3 in leaves of rice plants
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	root	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	This was consistent with the results of Na+ content and NMT that indicated OsDMI3 promoted root elongation under saline-alkaline stress by reducing root Na+ and H+ influx
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	alkaline tolerance	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	alkaline tolerance	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Collectively, our results suggest that OsDMI3 could promote saline-alkaline tolerance in rice roots by modulating the Na+ and H+ influx
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	alkaline stress	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	This was consistent with the results of Na+ content and NMT that indicated OsDMI3 promoted root elongation under saline-alkaline stress by reducing root Na+ and H+ influx
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	alkaline stress	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Moreover, real-time RT-PCR analysis revealed that OsDMI3 up-regulated the transcript levels of OsSOS1 and PM-H+-ATPase genes OsA3 and OsA8 in saline-alkaline stressed rice plants
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	tolerance	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	tolerance	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Collectively, our results suggest that OsDMI3 could promote saline-alkaline tolerance in rice roots by modulating the Na+ and H+ influx
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	root elongation	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	This was consistent with the results of Na+ content and NMT that indicated OsDMI3 promoted root elongation under saline-alkaline stress by reducing root Na+ and H+ influx
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	stress	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	This was consistent with the results of Na+ content and NMT that indicated OsDMI3 promoted root elongation under saline-alkaline stress by reducing root Na+ and H+ influx
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	Kinase	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	Kinase	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	We measured the OsDMI3 activity by an in-gel kinase assay, Na+ content by NaHCO3 treatment, and Na+ and H+ fluxes by noninvasive micro-test technology (NMT)
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	protein kinase	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	kinase	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	kinase	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	We measured the OsDMI3 activity by an in-gel kinase assay, Na+ content by NaHCO3 treatment, and Na+ and H+ fluxes by noninvasive micro-test technology (NMT)
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	ABA	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	OsDMI3 was found to directly phosphorylate Thr-25 in the N-terminus of OsMKK1, and this Thr-25 phosphorylation is OsDMI3-specific in ABA signaling
OsCCaMK|OsDMI3	Os05g0489900	LOC_Os05g41090	ABA	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	OsDMI3 was found to directly phosphorylate Thr-25 in the N-terminus of OsMKK1, and this Thr-25 phosphorylation is OsDMI3-specific in ABA signaling
OsCCC1	Os08g0323700	LOC_Os08g23440	homeostasis	Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1	Results from different tests indicated that the OsCCC1 plays a significant role in K+ and Cl- homeostasis and rice plant development
OsCCC1	Os08g0323700	LOC_Os08g23440	leaf	Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1	sativa cDNA, which was named OsCCC1, can be induced by KCl in the shoot and root and that the expression level was higher in the leaf and root tips than in any other part of the rice plant
OsCCC1	Os08g0323700	LOC_Os08g23440	root	Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1	sativa cDNA, which was named OsCCC1, can be induced by KCl in the shoot and root and that the expression level was higher in the leaf and root tips than in any other part of the rice plant
OsCCC1	Os08g0323700	LOC_Os08g23440	shoot	Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1	sativa cDNA, which was named OsCCC1, can be induced by KCl in the shoot and root and that the expression level was higher in the leaf and root tips than in any other part of the rice plant
OsCCC1	Os08g0323700	LOC_Os08g23440	transporter	Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1	Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1
OsCCC1	Os08g0323700	LOC_Os08g23440	leaf	A cation-chloride cotransporter gene is required for cell elongation and osmoregulation in rice.	OsCCC1 was expressed in all cells of the roots, leaf and basal node
OsCCC1	Os08g0323700	LOC_Os08g23440	root	A cation-chloride cotransporter gene is required for cell elongation and osmoregulation in rice.	The expression of OsCCC1 was found in both the roots and shoots although higher expression was found in the root tips
OsCCC1	Os08g0323700	LOC_Os08g23440	growth	A cation-chloride cotransporter gene is required for cell elongation and osmoregulation in rice.	Introduction of OsCCC1 cDNA into the mutant rescued the mutant growth, indicating that growth defect of both the roots and shoots are caused by loss of function of OsCCC1
OsCCC1	Os08g0323700	LOC_Os08g23440	homeostasis	A cation-chloride cotransporter gene is required for cell elongation and osmoregulation in rice.	These results suggest that OsCCC1 is involved in the cell elongation by regulating ion homeostasis to maintain cellular osmotic potential
OsCCC1	Os08g0323700	LOC_Os08g23440	cell elongation	A cation-chloride cotransporter gene is required for cell elongation and osmoregulation in rice.	These results suggest that OsCCC1 is involved in the cell elongation by regulating ion homeostasis to maintain cellular osmotic potential
OsCCC1	Os08g0323700	LOC_Os08g23440	plasma membrane	A cation-chloride cotransporter gene is required for cell elongation and osmoregulation in rice.	Immunoblot analysis revealed that OsCCC1 was mainly localized to the plasma membrane
OsCCC1	Os08g0323700	LOC_Os08g23440	node	A cation-chloride cotransporter gene is required for cell elongation and osmoregulation in rice.	OsCCC1 was expressed in all cells of the roots, leaf and basal node
OsCCD1	Os12g0640600	LOC_Os12g44310	endosperm	Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta	In this study, we investigated the impact of the rice CCD1 (OsCCD1) on the pigmentation of Golden Rice 2 (GR2), a genetically modified rice variety accumulating carotenoids in the endosperm
OsCCD1	Os12g0640600	LOC_Os12g44310	endosperm	Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta	Despite high expression levels of OsCCD1 in sense plants, pigment analysis revealed carotenoid levels and patterns comparable to those of GR2, pleading against carotenoids as substrates in rice endosperm
OsCCD1	Os12g0640600	LOC_Os12g44310	endosperm	Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta	To check whether OsCCD1 overexpressed in GR2 endosperm is active, in vitro assays were performed with apocarotenoid substrates
OsCCR1	Os02g0808800	LOC_Os02g56460	defense	Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice	Expression of OsCCR1 was induced by a sphingolipid elicitor, suggesting that OsCCR1 participates in defense signaling
OsCCR1	Os02g0808800	LOC_Os02g56460	defense	Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice	Thus, it is likely that OsRac1 controls lignin synthesis through regulation of both NADPH oxidase and OsCCR1 activities during defense responses in rice
OsCCR1	Os02g0808800	LOC_Os02g56460	defense response	Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice	Thus, it is likely that OsRac1 controls lignin synthesis through regulation of both NADPH oxidase and OsCCR1 activities during defense responses in rice
OsCCR10	Os02g0811800	LOC_Os02g56700	grain	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Notably, transgenic rice plants with root-preferential overexpression of OsCCR10 exhibited higher grain yield than NT controls plants under field drought conditions, indicating that lignin biosynthesis mediated by OsCCR10 contributes to drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	drought	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Transgenic rice plants overexpressing OsCCR10 showed improved drought tolerance at the vegetative stages of growth, as well as higher photosynthetic efficiency, lower water loss rates, and higher lignin content in roots compared to non-transgenic (NT) controls
OsCCR10	Os02g0811800	LOC_Os02g56700	drought	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 In contrast, CRISPR/Cas9-mediated OsCCR10 knock-out mutants exhibited reduced lignin accumulation in roots and less drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	drought	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Notably, transgenic rice plants with root-preferential overexpression of OsCCR10 exhibited higher grain yield than NT controls plants under field drought conditions, indicating that lignin biosynthesis mediated by OsCCR10 contributes to drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	tolerance	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Transgenic rice plants overexpressing OsCCR10 showed improved drought tolerance at the vegetative stages of growth, as well as higher photosynthetic efficiency, lower water loss rates, and higher lignin content in roots compared to non-transgenic (NT) controls
OsCCR10	Os02g0811800	LOC_Os02g56700	tolerance	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 In contrast, CRISPR/Cas9-mediated OsCCR10 knock-out mutants exhibited reduced lignin accumulation in roots and less drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	tolerance	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Notably, transgenic rice plants with root-preferential overexpression of OsCCR10 exhibited higher grain yield than NT controls plants under field drought conditions, indicating that lignin biosynthesis mediated by OsCCR10 contributes to drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	grain yield	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Notably, transgenic rice plants with root-preferential overexpression of OsCCR10 exhibited higher grain yield than NT controls plants under field drought conditions, indicating that lignin biosynthesis mediated by OsCCR10 contributes to drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	yield	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Notably, transgenic rice plants with root-preferential overexpression of OsCCR10 exhibited higher grain yield than NT controls plants under field drought conditions, indicating that lignin biosynthesis mediated by OsCCR10 contributes to drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	abiotic stress	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 The OsCCR10 transcript levels were found to increase in response to abiotic stresses, such as drought, high salinity, and abscisic acid (ABA), and transcripts were detected in roots at all developmental stages
OsCCR10	Os02g0811800	LOC_Os02g56700	vegetative	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Transgenic rice plants overexpressing OsCCR10 showed improved drought tolerance at the vegetative stages of growth, as well as higher photosynthetic efficiency, lower water loss rates, and higher lignin content in roots compared to non-transgenic (NT) controls
OsCCR10	Os02g0811800	LOC_Os02g56700	drought tolerance	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Transgenic rice plants overexpressing OsCCR10 showed improved drought tolerance at the vegetative stages of growth, as well as higher photosynthetic efficiency, lower water loss rates, and higher lignin content in roots compared to non-transgenic (NT) controls
OsCCR10	Os02g0811800	LOC_Os02g56700	drought tolerance	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 In contrast, CRISPR/Cas9-mediated OsCCR10 knock-out mutants exhibited reduced lignin accumulation in roots and less drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	drought tolerance	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Notably, transgenic rice plants with root-preferential overexpression of OsCCR10 exhibited higher grain yield than NT controls plants under field drought conditions, indicating that lignin biosynthesis mediated by OsCCR10 contributes to drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	cytoplasm	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Subcellular localisation assays revealed that OsCCR10 is a catalytically active enzyme that is localised in the cytoplasm
OsCCR10	Os02g0811800	LOC_Os02g56700	biotic stress	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 The OsCCR10 transcript levels were found to increase in response to abiotic stresses, such as drought, high salinity, and abscisic acid (ABA), and transcripts were detected in roots at all developmental stages
OsCCR10	Os02g0811800	LOC_Os02g56700	abscisic acid	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 The OsCCR10 transcript levels were found to increase in response to abiotic stresses, such as drought, high salinity, and abscisic acid (ABA), and transcripts were detected in roots at all developmental stages
OsCCR10	Os02g0811800	LOC_Os02g56700	lignin	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Transgenic rice plants overexpressing OsCCR10 showed improved drought tolerance at the vegetative stages of growth, as well as higher photosynthetic efficiency, lower water loss rates, and higher lignin content in roots compared to non-transgenic (NT) controls
OsCCR10	Os02g0811800	LOC_Os02g56700	lignin	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 In contrast, CRISPR/Cas9-mediated OsCCR10 knock-out mutants exhibited reduced lignin accumulation in roots and less drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	lignin	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Notably, transgenic rice plants with root-preferential overexpression of OsCCR10 exhibited higher grain yield than NT controls plants under field drought conditions, indicating that lignin biosynthesis mediated by OsCCR10 contributes to drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	lignin biosynthesis	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Notably, transgenic rice plants with root-preferential overexpression of OsCCR10 exhibited higher grain yield than NT controls plants under field drought conditions, indicating that lignin biosynthesis mediated by OsCCR10 contributes to drought tolerance
OsCCR10	Os02g0811800	LOC_Os02g56700	water loss	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Transgenic rice plants overexpressing OsCCR10 showed improved drought tolerance at the vegetative stages of growth, as well as higher photosynthetic efficiency, lower water loss rates, and higher lignin content in roots compared to non-transgenic (NT) controls
OsCCR14	Os08g0441500	LOC_Os08g34280	root	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.
OsCCR14	Os08g0441500	LOC_Os08g34280	anther	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.
OsCCR14	Os08g0441500	LOC_Os08g34280	nucleus	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 SCF OsFBK1 mediates turn-over of OsATL53 in cytoplasm and nucleus, while of OsCCR14 in the nucleus as validated by cell-free degradation assays
OsCCR14	Os08g0441500	LOC_Os08g34280	cytoplasm	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 Currently, we have identified OsATL53, a member of ATL family of RING-H2 proteins interacting with OsCCR14 in cytoplasm
OsCCR14	Os08g0441500	LOC_Os08g34280	cytoplasm	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 SCF OsFBK1 mediates turn-over of OsATL53 in cytoplasm and nucleus, while of OsCCR14 in the nucleus as validated by cell-free degradation assays
OsCCR14	Os08g0441500	LOC_Os08g34280	cytoplasm	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 Biochemically, OsATL53 decreases enzymatic activity of OsCCR14 and sequesters it in the cytoplasm thereby regulating the lignification process
OsCCR14	Os08g0441500	LOC_Os08g34280	jasmonic	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.
OsCCR14	Os08g0441500	LOC_Os08g34280	jasmonic acid	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.
OsCCR14	Os08g0441500	LOC_Os08g34280	lignin	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	 Knock-down rice transgenics of OsATL53 display increased lignin deposition in the anthers and roots vis-a-vis wild-type, while those of OsCCR14 have decreased lignin content
OsCCR4a	Os10g0412100	LOC_Os10g27230	cytoplasm	Novel interaction between CCR4 and CAF1 in rice CCR4-NOT deadenylase complex.	Both OsCCR4a and OsCCR4b fluorescent fusion proteins were localized in the rice cytoplasm and nucleus, and both associated with processing bodies via their N-terminus
OsCCR4b	Os03g0166800	LOC_Os03g07080	cytoplasm	Novel interaction between CCR4 and CAF1 in rice CCR4-NOT deadenylase complex.	Both OsCCR4a and OsCCR4b fluorescent fusion proteins were localized in the rice cytoplasm and nucleus, and both associated with processing bodies via their N-terminus
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	seedling	Potential role of the rice OsCCS52A gene in endoreduplication	In rice, OsCCS52A is highly expressed in seedlings, flowers, immature panicles and 15 DAP kernels
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	grain	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1	We conclude that besides having a conserved role in regulating cell cycle, APC/C(TE) has a unique function in regulating the plant-specific postembryonic shoot branching and tillering, which are major determinants of plant architecture and grain yield
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	flower	Potential role of the rice OsCCS52A gene in endoreduplication	In rice, OsCCS52A is highly expressed in seedlings, flowers, immature panicles and 15 DAP kernels
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	cell cycle	Potential role of the rice OsCCS52A gene in endoreduplication	In this study, rice cell cycle switch 52 A (OsCCS52A), an APC activator, is functionally characterized using the reverse genetic approach
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	cell elongation	Potential role of the rice OsCCS52A gene in endoreduplication	In addition, overexpression of OsCCS52A inhibits mitotic cell division and induces endoreduplication and cell elongation in fission yeast
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	vegetative	Potential role of the rice OsCCS52A gene in endoreduplication	A cycle of endoreduplication is common in most of the differentiated cells of plant vegetative tissues and it occurs extensively in cereal endosperm cells
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	endosperm	Potential role of the rice OsCCS52A gene in endoreduplication	Taken together, these results suggest that OsCCS52A is involved in maintaining normal seed size formation by mediating the exit from mitotic cell division to enter the endoreduplication cycles in rice endosperm
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	cell division	Potential role of the rice OsCCS52A gene in endoreduplication	In addition, overexpression of OsCCS52A inhibits mitotic cell division and induces endoreduplication and cell elongation in fission yeast
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	cell division	Potential role of the rice OsCCS52A gene in endoreduplication	Taken together, these results suggest that OsCCS52A is involved in maintaining normal seed size formation by mediating the exit from mitotic cell division to enter the endoreduplication cycles in rice endosperm
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	seed	Potential role of the rice OsCCS52A gene in endoreduplication	In rice, OsCCS52A is highly expressed in seedlings, flowers, immature panicles and 15 DAP kernels
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	seed	Potential role of the rice OsCCS52A gene in endoreduplication	Taken together, these results suggest that OsCCS52A is involved in maintaining normal seed size formation by mediating the exit from mitotic cell division to enter the endoreduplication cycles in rice endosperm
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	seed size	Potential role of the rice OsCCS52A gene in endoreduplication	Taken together, these results suggest that OsCCS52A is involved in maintaining normal seed size formation by mediating the exit from mitotic cell division to enter the endoreduplication cycles in rice endosperm
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	grain	Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering	A rice tiller is a specialized grain-bearing branch that contributes greatly to grain yield
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	cell division	Potential role of the rice OsCCS52A gene in endoreduplication	Taken together, these results suggest that OsCCS52A is involved in maintaining normal seed size formation by mediating the exit from mitotic cell division to enter the endoreduplication cycles in rice endosperm
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	panicle	Potential role of the rice OsCCS52A gene in endoreduplication	In rice, OsCCS52A is highly expressed in seedlings, flowers, immature panicles and 15 DAP kernels
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	ABA	The SnRK2-APC/C(TE) regulatory module mediates the antagonistic action of gibberellic acid and abscisic acid pathways.	We find that TE physically interacts with ABA receptor OsPYL/RCARs and promotes their degradation by the proteasome
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	ABA	The SnRK2-APC/C(TE) regulatory module mediates the antagonistic action of gibberellic acid and abscisic acid pathways.	Genetic analysis also shows OsPYL/RCARs act downstream of TE in mediating ABA responses
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	ABA	The SnRK2-APC/C(TE) regulatory module mediates the antagonistic action of gibberellic acid and abscisic acid pathways.	Conversely, ABA inhibits APC/C(TE) activity by phosphorylating TE through activating the SNF1-related protein kinases (SnRK2s), which may interrupt the interaction between TE and OsPYL/RCARs and subsequently stabilize OsPYL/RCARs
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	ABA	The SnRK2-APC/C(TE) regulatory module mediates the antagonistic action of gibberellic acid and abscisic acid pathways.	We find that TE physically interacts with ABA receptor OsPYL/RCARs and promotes their degradation by the proteasome
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	ABA	The SnRK2-APC/C(TE) regulatory module mediates the antagonistic action of gibberellic acid and abscisic acid pathways.	Genetic analysis also shows OsPYL/RCARs act downstream of TE in mediating ABA responses
OsCCS52A|TAD|TE	Os03g0123300	LOC_Os03g03150	ABA	The SnRK2-APC/C(TE) regulatory module mediates the antagonistic action of gibberellic acid and abscisic acid pathways.	Conversely, ABA inhibits APC/C(TE) activity by phosphorylating TE through activating the SNF1-related protein kinases (SnRK2s), which may interrupt the interaction between TE and OsPYL/RCARs and subsequently stabilize OsPYL/RCARs
OsCCS52B	Os01g0972900	LOC_Os01g74146	cell cycle	Functional characterization of a B-type cell cycle switch 52 in rice (OsCCS52B)	In this study, a rice cell cycle switch 52 B (OsCCS52B) was functionally characterized using two approaches: overexpression of the gene product in fission yeast and characterization of an insertion mutant line 1B-10423
OsCCS52B	Os01g0972900	LOC_Os01g74146	cell cycle	Functional characterization of a B-type cell cycle switch 52 in rice (OsCCS52B)	Functional characterization of a B-type cell cycle switch 52 in rice (OsCCS52B)
OsCCS52B	Os01g0972900	LOC_Os01g74146	flower	Functional characterization of a B-type cell cycle switch 52 in rice (OsCCS52B)	In wild-type plants, OsCCS52B is highly expressed in generative organs such as flowers and kernels
OsCCS52B	Os01g0972900	LOC_Os01g74146	endosperm	Functional characterization of a B-type cell cycle switch 52 in rice (OsCCS52B)	These results suggest that OsCCS52B may be involved in cell expansion regulation in rice endosperm
OsCCS52B	Os01g0972900	LOC_Os01g74146	cell elongation	Functional characterization of a B-type cell cycle switch 52 in rice (OsCCS52B)	Overexpression of OsCCS52B induces cell elongation and slower cell proliferation in fission yeast
OsCCT38|OsPRR59	Os11g0157600	LOC_Os11g05930	homeostasis	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.
OsCCT38|OsPRR59	Os11g0157600	LOC_Os11g05930	transporter	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	 Here, we report two central oscillator genes of circadian clock, OsPRR95 and OsPRR59 in rice, which function as transcriptional repressors to negatively regulate the rhythmic expression of OsMGT3 encoding a chloroplast-localized Mg(2+) transporter
OsCCT38|OsPRR59	Os11g0157600	LOC_Os11g05930	sugar	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	 Furthermore, sugar triggers the increase of superoxide, which may act as a feedback signal to positively regulate the expression of OsPRR95 and OsPRR59
OsCCT38|OsPRR59	Os11g0157600	LOC_Os11g05930	transcriptional repressor	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	 Here, we report two central oscillator genes of circadian clock, OsPRR95 and OsPRR59 in rice, which function as transcriptional repressors to negatively regulate the rhythmic expression of OsMGT3 encoding a chloroplast-localized Mg(2+) transporter
OsCCT38|OsPRR59	Os11g0157600	LOC_Os11g05930	magnesium	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.
OsCCX2	Os03g0656500	LOC_Os03g45370	tolerance	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	In contrast to AtCCXs, OsCCX2 expressing K667 yeast cells show tolerance towards excess Na(+), Li(+), Fe(2+), Zn(2+) and Co(2+) and suggest its ability to transport both mono as well as divalent cations in yeast
OsCCX2	Os03g0656500	LOC_Os03g45370	tolerance	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	OsCCX2 can be used as potential candidate for enhancing the abiotic stress tolerance in plants as well as for phytoremediation of heavy metal polluted soil
OsCCX2	Os03g0656500	LOC_Os03g45370	abiotic stress	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	Rice genome encode four CCXs and only OsCCX2 transcript showed differential expression under abiotic stresses and Ca(2+) starvation conditions
OsCCX2	Os03g0656500	LOC_Os03g45370	abiotic stress	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	OsCCX2 can be used as potential candidate for enhancing the abiotic stress tolerance in plants as well as for phytoremediation of heavy metal polluted soil
OsCCX2	Os03g0656500	LOC_Os03g45370	stress	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	OsCCX2 can be used as potential candidate for enhancing the abiotic stress tolerance in plants as well as for phytoremediation of heavy metal polluted soil
OsCCX2	Os03g0656500	LOC_Os03g45370	biotic stress	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	Rice genome encode four CCXs and only OsCCX2 transcript showed differential expression under abiotic stresses and Ca(2+) starvation conditions
OsCCX2	Os03g0656500	LOC_Os03g45370	biotic stress	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	OsCCX2 can be used as potential candidate for enhancing the abiotic stress tolerance in plants as well as for phytoremediation of heavy metal polluted soil
OsCCX2	Os03g0656500	LOC_Os03g45370	stress tolerance	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	OsCCX2 can be used as potential candidate for enhancing the abiotic stress tolerance in plants as well as for phytoremediation of heavy metal polluted soil
OsCCX2	Os03g0656500	LOC_Os03g45370	calcium	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.
OsCCX2	Os03g0656500	LOC_Os03g45370	xylem	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.	OsCCX2 is localized to plasma membrane, and OsCCX2 is mainly expressed in xylem region of vascular tissues at the nodes
OsCCX2	Os03g0656500	LOC_Os03g45370	xylem	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.	OsCCX2 might function as an efflux transporter, responsible for Cd loading into xylem vessels
OsCCX2	Os03g0656500	LOC_Os03g45370	grain	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.
OsCCX2	Os03g0656500	LOC_Os03g45370	transporter	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.
OsCCX2	Os03g0656500	LOC_Os03g45370	plasma membrane	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.	OsCCX2 is localized to plasma membrane, and OsCCX2 is mainly expressed in xylem region of vascular tissues at the nodes
OsCCX2	Os03g0656500	LOC_Os03g45370	cadmium	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cell cycle	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	Double-target in situ hybridization and quantitative RT-PCR analyses revealed that SLE1 was expressed specifically during the M-phase of the cell cycle, and suggested that the cell-cycle regulation was altered in sle1 mutants
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	panicle	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Analysis of OsCD1 promoter with GUS fusion expression shows that OsCD1 exhibits higher expression in young meristem tissues such as fresh roots, young panicle and stem apical meristem
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	leaf	Isolation and characterization of a rice mutant with narrow and rolled leaves	To understand the molecular mechanism of leaf morphogenesis, we identified a rice mutant nrl1, which was characterized by a phenotype of narrow and rolled leaves
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	dwarf	Identification and characterization of NARROW AND ROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice	We isolated three allelic mutants of NARROW AND ROLLED LEAF 1 (nrl1) which showed phenotypes of reduced leaf width and semi-rolled leaves and different degrees of dwarfism
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	Identification and characterization of NARROW AND ROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice	The NRL1 gene was mapped to the chromosome 12 and encodes the cellulose synthase-like protein D4 (OsCslD4)
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	leaf	Identification and characterization of NARROW AND ROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice	We isolated three allelic mutants of NARROW AND ROLLED LEAF 1 (nrl1) which showed phenotypes of reduced leaf width and semi-rolled leaves and different degrees of dwarfism
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	leaf	Identification and characterization of NARROW AND ROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice	We conclude that OsCslD4 encoded by NRL1 plays a critical role in leaf morphogenesis and vegetative development in rice
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	meristem	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Analysis of OsCD1 promoter with GUS fusion expression shows that OsCD1 exhibits higher expression in young meristem tissues such as fresh roots, young panicle and stem apical meristem
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	root	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Analysis of OsCD1 promoter with GUS fusion expression shows that OsCD1 exhibits higher expression in young meristem tissues such as fresh roots, young panicle and stem apical meristem
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cell wall	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Cell wall composition analysis reveals that cellulose content and the level of xylose are significantly reduced in mature culm owing to loss of OsCD1 function
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	vegetative	Identification and characterization of NARROW AND ROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice	We conclude that OsCslD4 encoded by NRL1 plays a critical role in leaf morphogenesis and vegetative development in rice
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	dwarf	Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth	We report here an in-depth characterization of a narrow leaf and dwarf1 (nd1) rice mutant that shows significant reduction in plant growth due to retarded cell division
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	leaf	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	Map-based cloning revealed that SLE1 encodes the OsCSLD4 protein, which was identified previously from a narrow leaf and dwarf 1 mutant
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth	Immunological studies and monosaccharide compositional and glycosyl linkage analyses explored several wall compositional effects caused by disruption of OsCSLD4, including alterations in the structure of arabinoxylan and the content of cellulose and homogalacturonan, which are distinct in the monocot grass species Oryza sativa (rice)
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	Isolation and characterization of a rice mutant with narrow and rolled leaves	The nrl1 mutation was rescued by transformation with the wild-type cellulose synthase-like D4 gene
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	Isolation and characterization of a rice mutant with narrow and rolled leaves	Accordingly, the cellulose synthase-like D4 gene was identified as the NRL1 gene
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	pollen	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	In addition to the size reduction of organs, sle1 mutants exhibited serious developmental defects in pollen formation, anther dehiscence, stomata formation, and cell arrangement in various tissues
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	growth	Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth	We report here an in-depth characterization of a narrow leaf and dwarf1 (nd1) rice mutant that shows significant reduction in plant growth due to retarded cell division
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	culm	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Cell wall composition analysis reveals that cellulose content and the level of xylose are significantly reduced in mature culm owing to loss of OsCD1 function
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	growth	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	dwarf	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	Map-based cloning revealed that SLE1 encodes the OsCSLD4 protein, which was identified previously from a narrow leaf and dwarf 1 mutant
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	leaf	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	This study presents a detailed analysis of slender leaf 1 (sle1) mutants of rice that showed rolled and narrow leaf blades and a reduction in plant height
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	leaf	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	The narrow leaf blade of sle1 was caused by reduced cell proliferation beginning at the P3 primordial stage
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	stem	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Analysis of OsCD1 promoter with GUS fusion expression shows that OsCD1 exhibits higher expression in young meristem tissues such as fresh roots, young panicle and stem apical meristem
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Map-based cloning indicates that a member of the cellulose synthase-like D (CSLD) group is a candidate for OsCD1
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Furthermore, sequence analysis indicates that OsCD1 contains the common D,D,D,QXXRW motif, which is a feature of the cellulose synthase-like super-family
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Cell wall composition analysis reveals that cellulose content and the level of xylose are significantly reduced in mature culm owing to loss of OsCD1 function
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	growth	Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth	OsCSLD4 is mainly expressed in tissues undergoing rapid growth
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	growth	Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth	The inconsistent alterations in the two tissues and the observable structural defects in primary walls indicate that OsCSLD4 plays important roles in cell-wall formation and plant growth
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	panicle	Isolation and characterization of a rice mutant with narrow and rolled leaves	NRL1 was transcribed in various tissues and was mainly expressed in panicles and internodes
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	stomata	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	In addition to the size reduction of organs, sle1 mutants exhibited serious developmental defects in pollen formation, anther dehiscence, stomata formation, and cell arrangement in various tissues
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	height	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	This study presents a detailed analysis of slender leaf 1 (sle1) mutants of rice that showed rolled and narrow leaf blades and a reduction in plant height
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	architecture	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	leaf	Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth	We report here an in-depth characterization of a narrow leaf and dwarf1 (nd1) rice mutant that shows significant reduction in plant growth due to retarded cell division
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	Further study of OsCSLD4 is expected to yield new insight into the role of hemicelluloses in plant development
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cell division	Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth	We report here an in-depth characterization of a narrow leaf and dwarf1 (nd1) rice mutant that shows significant reduction in plant growth due to retarded cell division
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	anther	Rice slender leaf 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation	In addition to the size reduction of organs, sle1 mutants exhibited serious developmental defects in pollen formation, anther dehiscence, stomata formation, and cell arrangement in various tissues
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	leaf	DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.).	08% phenotypic variation for plant height and leaf width, respectively, were located on the same interval of chromosome 12 flanking SSR markers RM519 and RM1103, and was named DNL1 (Dwarf and Narrowed Leaf 1)
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	leaf	DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.).	The results of ORF analysis in target region and nucleotide sequence alignment indicated that DNL1 encodes cellulose synthase-like D4 protein, and a single nucleotide substitution (C2488T) in dnl1 result in decrease in plant height and leaf width
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	height	DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.).	08% phenotypic variation for plant height and leaf width, respectively, were located on the same interval of chromosome 12 flanking SSR markers RM519 and RM1103, and was named DNL1 (Dwarf and Narrowed Leaf 1)
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	height	DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.).	The results of ORF analysis in target region and nucleotide sequence alignment indicated that DNL1 encodes cellulose synthase-like D4 protein, and a single nucleotide substitution (C2488T) in dnl1 result in decrease in plant height and leaf width
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.).	The results of ORF analysis in target region and nucleotide sequence alignment indicated that DNL1 encodes cellulose synthase-like D4 protein, and a single nucleotide substitution (C2488T) in dnl1 result in decrease in plant height and leaf width
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	grain	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Intriguingly, the disruption of OsCSLD4 function decreased grain width and weight, while overexpression of OsCSLD4 increased grain width and weight
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	salt	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	salt	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 This study demonstrated that the OsCSLD4 function-disrupted mutant nd1 was sensitive to salt stress, but insensitive to ABA
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	salt	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Moreover, overexpression of OsCSLD4 can enhance rice ABA synthesis gene expression, increase ABA content, and improve rice salt tolerance, thus implying that OsCSLD4-regulated rice salt stress tolerance is mediated by ABA synthesis
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	salt	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 The results from the transcriptome analysis showed that more osmotic stress responsive genes were impaired in nd1 than salt stress responsive genes, thus indicating that OsCSLD4 is involved in rice salt stress response through an ABA-induced osmotic response pathway
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	tolerance	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	tolerance	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Moreover, overexpression of OsCSLD4 can enhance rice ABA synthesis gene expression, increase ABA content, and improve rice salt tolerance, thus implying that OsCSLD4-regulated rice salt stress tolerance is mediated by ABA synthesis
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	 ABA 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	 ABA 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Moreover, overexpression of OsCSLD4 can enhance rice ABA synthesis gene expression, increase ABA content, and improve rice salt tolerance, thus implying that OsCSLD4-regulated rice salt stress tolerance is mediated by ABA synthesis
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	salt tolerance	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Moreover, overexpression of OsCSLD4 can enhance rice ABA synthesis gene expression, increase ABA content, and improve rice salt tolerance, thus implying that OsCSLD4-regulated rice salt stress tolerance is mediated by ABA synthesis
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	salt stress	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	salt stress	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 This study demonstrated that the OsCSLD4 function-disrupted mutant nd1 was sensitive to salt stress, but insensitive to ABA
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	salt stress	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Moreover, overexpression of OsCSLD4 can enhance rice ABA synthesis gene expression, increase ABA content, and improve rice salt tolerance, thus implying that OsCSLD4-regulated rice salt stress tolerance is mediated by ABA synthesis
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	salt stress	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 The results from the transcriptome analysis showed that more osmotic stress responsive genes were impaired in nd1 than salt stress responsive genes, thus indicating that OsCSLD4 is involved in rice salt stress response through an ABA-induced osmotic response pathway
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	stress	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	stress	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Moreover, overexpression of OsCSLD4 can enhance rice ABA synthesis gene expression, increase ABA content, and improve rice salt tolerance, thus implying that OsCSLD4-regulated rice salt stress tolerance is mediated by ABA synthesis
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	stress	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 The results from the transcriptome analysis showed that more osmotic stress responsive genes were impaired in nd1 than salt stress responsive genes, thus indicating that OsCSLD4 is involved in rice salt stress response through an ABA-induced osmotic response pathway
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	ABA	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	ABA	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 This study demonstrated that the OsCSLD4 function-disrupted mutant nd1 was sensitive to salt stress, but insensitive to ABA
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	ABA	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Moreover, overexpression of OsCSLD4 can enhance rice ABA synthesis gene expression, increase ABA content, and improve rice salt tolerance, thus implying that OsCSLD4-regulated rice salt stress tolerance is mediated by ABA synthesis
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	grain width	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Intriguingly, the disruption of OsCSLD4 function decreased grain width and weight, while overexpression of OsCSLD4 increased grain width and weight
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	stress tolerance	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	stress tolerance	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 Moreover, overexpression of OsCSLD4 can enhance rice ABA synthesis gene expression, increase ABA content, and improve rice salt tolerance, thus implying that OsCSLD4-regulated rice salt stress tolerance is mediated by ABA synthesis
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	stress response	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 The results from the transcriptome analysis showed that more osmotic stress responsive genes were impaired in nd1 than salt stress responsive genes, thus indicating that OsCSLD4 is involved in rice salt stress response through an ABA-induced osmotic response pathway
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	ABA biosynthesis	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	osmotic stress	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	osmotic stress	Cellulose Synthase-Like Protein OsCSLD4 Plays an Important Role in the Response of Rice to Salt Stress by Mediating ABA Biosynthesis to Regulate Osmotic Stress Tolerance 	 The results from the transcriptome analysis showed that more osmotic stress responsive genes were impaired in nd1 than salt stress responsive genes, thus indicating that OsCSLD4 is involved in rice salt stress response through an ABA-induced osmotic response pathway
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	grain	Variation of a major facilitator superfamily gene contributes to differential cadmium accumulation between rice subspecies.	 Natural variation in OsCd1 with a missense mutation Val449Asp is responsible for the divergence of rice grain Cd accumulation between indica and japonica
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	growth	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	growth	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.	 Collectively, our data reveals the importance of OsCSLD4 in balancing the trade-off between rice growth and defense
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	defense response	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.	 Loss function of OsCSLD4 leads to a constitutive activation of defense response in rice
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	defense	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.	 Loss function of OsCSLD4 leads to a constitutive activation of defense response in rice
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	defense	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.	 Collectively, our data reveals the importance of OsCSLD4 in balancing the trade-off between rice growth and defense
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	plant growth	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cellulose	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	grain	Cell Wall Matrix Polysaccharides Contribute to Salt-Alkali Tolerance in Rice.	 The OsCSLD4 function-disrupted mutant displayed reduced SSAS tolerance, biomass and grain yield, whereas the OsCSLD4 overexpression lines exhibited increased SSAS tolerance
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	grain yield	Cell Wall Matrix Polysaccharides Contribute to Salt-Alkali Tolerance in Rice.	 The OsCSLD4 function-disrupted mutant displayed reduced SSAS tolerance, biomass and grain yield, whereas the OsCSLD4 overexpression lines exhibited increased SSAS tolerance
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	tolerance	Cell Wall Matrix Polysaccharides Contribute to Salt-Alkali Tolerance in Rice.	 The OsCSLD4 function-disrupted mutant displayed reduced SSAS tolerance, biomass and grain yield, whereas the OsCSLD4 overexpression lines exhibited increased SSAS tolerance
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	cell wall	Cell Wall Matrix Polysaccharides Contribute to Salt-Alkali Tolerance in Rice.	 Collectively, this study not only reveals the potential role of cell wall matrix polysaccharides in mediating SSAS tolerance, but also highlights applicable value of OsCSLD4 and the large-scale screening system in developing SSAS-tolerant rice
OsCD1|OsCSLD4|NRL1|ND1|sle1|DNL1	Os12g0555600	LOC_Os12g36890	biomass	Cell Wall Matrix Polysaccharides Contribute to Salt-Alkali Tolerance in Rice.	 The OsCSLD4 function-disrupted mutant displayed reduced SSAS tolerance, biomass and grain yield, whereas the OsCSLD4 overexpression lines exhibited increased SSAS tolerance
OsCDC48	Os03g0151800	LOC_Os03g05730	leaf	Single base substitution in OsCDC48 is responsible for premature senescence and death phenotype in rice.	OsCDC48 was expressed constitutively in the root, stem, leaf and panicle
OsCDC48	Os03g0151800	LOC_Os03g05730	panicle	Single base substitution in OsCDC48 is responsible for premature senescence and death phenotype in rice.	OsCDC48 was expressed constitutively in the root, stem, leaf and panicle
OsCDC48	Os03g0151800	LOC_Os03g05730	senescence	Single base substitution in OsCDC48 is responsible for premature senescence and death phenotype in rice.	Single base substitution in OsCDC48 is responsible for premature senescence and death phenotype in rice.
OsCDC48	Os03g0151800	LOC_Os03g05730	senescence	Single base substitution in OsCDC48 is responsible for premature senescence and death phenotype in rice.	Our results indicated that the impaired function of OsCDC48 was responsible for the premature senescence and death phenotype
OsCDC48	Os03g0151800	LOC_Os03g05730	grain	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Overexpression of OsCDC48-psd128 resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, accumulation of reactive oxygen species and decreased plant tiller numbers while overexpression of OsCDC48 also resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, but increased plant tiller numbers and grain yield, indicating its potential utilization for yield improvement
OsCDC48	Os03g0151800	LOC_Os03g05730	tiller	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Overexpression of OsCDC48-psd128 resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, accumulation of reactive oxygen species and decreased plant tiller numbers while overexpression of OsCDC48 also resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, but increased plant tiller numbers and grain yield, indicating its potential utilization for yield improvement
OsCDC48	Os03g0151800	LOC_Os03g05730	ATPase	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	We demonstrate that the C-terminus of OsCDC48 is essential for maintaining its full ATPase activity and OsCDC48/48E interaction is required to modulate cellular processes and plant survival in rice
OsCDC48	Os03g0151800	LOC_Os03g05730	ATPase	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Overexpression of OsCDC48-psd128 resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, accumulation of reactive oxygen species and decreased plant tiller numbers while overexpression of OsCDC48 also resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, but increased plant tiller numbers and grain yield, indicating its potential utilization for yield improvement
OsCDC48	Os03g0151800	LOC_Os03g05730	ATPase	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Our results demonstrated that the C-terminal region of OsCDC48 was essential for maintaining the full ATPase activity and OsCDC48/48E complex might function in form of heteromultimers to modulate cellular processes and plant survival in rice
OsCDC48	Os03g0151800	LOC_Os03g05730	grain yield	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Overexpression of OsCDC48-psd128 resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, accumulation of reactive oxygen species and decreased plant tiller numbers while overexpression of OsCDC48 also resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, but increased plant tiller numbers and grain yield, indicating its potential utilization for yield improvement
OsCDC48	Os03g0151800	LOC_Os03g05730	yield	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Overexpression of OsCDC48-psd128 resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, accumulation of reactive oxygen species and decreased plant tiller numbers while overexpression of OsCDC48 also resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, but increased plant tiller numbers and grain yield, indicating its potential utilization for yield improvement
OsCDC48	Os03g0151800	LOC_Os03g05730	cell cycle	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Removal of the C-terminus of OsCDC48 caused altered expression of cell cycle-related genes, changed the percentage of cells in G1 and G2/M phases, and abolished the interaction between OsCDC48 itself and between OsCDC48 and OsCDC48E, respectively
OsCDC48	Os03g0151800	LOC_Os03g05730	tiller number	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Overexpression of OsCDC48-psd128 resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, accumulation of reactive oxygen species and decreased plant tiller numbers while overexpression of OsCDC48 also resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, but increased plant tiller numbers and grain yield, indicating its potential utilization for yield improvement
OsCDC48	Os03g0151800	LOC_Os03g05730	reactive oxygen species	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Overexpression of OsCDC48-psd128 resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, accumulation of reactive oxygen species and decreased plant tiller numbers while overexpression of OsCDC48 also resulted in differential expression of AAA-ATPase associated genes leading to increased total ATPase activity, but increased plant tiller numbers and grain yield, indicating its potential utilization for yield improvement
OsCDC48E	Os10g0442600	LOC_Os10g30580	senescence	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	OsCDC48E knockout plants exhibited similar behavior to psd128 with premature senescence and plant death
OsCDKF;2	Os12g0424700	LOC_Os12g23700	grain	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Flow cytometric analysis in young panicles of plants overexpressing OsARF12 and cell number examination of cdkf;2 mutants verify that OsARF12 positively regulates grain filling and grain size by targeting OsCDKF;2
OsCDKF;2	Os12g0424700	LOC_Os12g23700	grain	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Our results reveal that miR167-OsARF12 module works downstream of miR159 to regulate rice grain filling and grain size by OsCDKF;2 through controlling cell division and mediating auxin and BR signals
OsCDKF;2	Os12g0424700	LOC_Os12g23700	grain size	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Flow cytometric analysis in young panicles of plants overexpressing OsARF12 and cell number examination of cdkf;2 mutants verify that OsARF12 positively regulates grain filling and grain size by targeting OsCDKF;2
OsCDKF;2	Os12g0424700	LOC_Os12g23700	grain size	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Our results reveal that miR167-OsARF12 module works downstream of miR159 to regulate rice grain filling and grain size by OsCDKF;2 through controlling cell division and mediating auxin and BR signals
OsCDKF;2	Os12g0424700	LOC_Os12g23700	brassinosteroid	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsCDKF;2	Os12g0424700	LOC_Os12g23700	BR	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsCDKF;2	Os12g0424700	LOC_Os12g23700	BR	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Our results reveal that miR167-OsARF12 module works downstream of miR159 to regulate rice grain filling and grain size by OsCDKF;2 through controlling cell division and mediating auxin and BR signals
OsCDKF;2	Os12g0424700	LOC_Os12g23700	Brassinosteroid	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsCDKF;2	Os12g0424700	LOC_Os12g23700	BR signaling	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsCDKF;2	Os12g0424700	LOC_Os12g23700	auxin	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsCDKF;2	Os12g0424700	LOC_Os12g23700	auxin	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Our results reveal that miR167-OsARF12 module works downstream of miR159 to regulate rice grain filling and grain size by OsCDKF;2 through controlling cell division and mediating auxin and BR signals
OsCDKF;2	Os12g0424700	LOC_Os12g23700	grain filling	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Flow cytometric analysis in young panicles of plants overexpressing OsARF12 and cell number examination of cdkf;2 mutants verify that OsARF12 positively regulates grain filling and grain size by targeting OsCDKF;2
OsCDKF;2	Os12g0424700	LOC_Os12g23700	grain filling	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Our results reveal that miR167-OsARF12 module works downstream of miR159 to regulate rice grain filling and grain size by OsCDKF;2 through controlling cell division and mediating auxin and BR signals
OsCDKF;2	Os12g0424700	LOC_Os12g23700	cell division	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Our results reveal that miR167-OsARF12 module works downstream of miR159 to regulate rice grain filling and grain size by OsCDKF;2 through controlling cell division and mediating auxin and BR signals
OsCDKF;2	Os12g0424700	LOC_Os12g23700	 BR 	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Additionally, plants overexpressing OsARF12 or cdkf;2 mutants present enhanced or reduced sensitivity to exogenous auxin and brassinosteroid (BR) treatments, confirming that OsCDKF;2 targeting by OsARF12 mediates auxin and BR signaling
OsCDKF;2	Os12g0424700	LOC_Os12g23700	 BR 	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Our results reveal that miR167-OsARF12 module works downstream of miR159 to regulate rice grain filling and grain size by OsCDKF;2 through controlling cell division and mediating auxin and BR signals
OsCDKF;2	Os12g0424700	LOC_Os12g23700	young panicles	The miR167-OsARF12 module regulates grain filling and grain size downstream of miR159.	 Flow cytometric analysis in young panicles of plants overexpressing OsARF12 and cell number examination of cdkf;2 mutants verify that OsARF12 positively regulates grain filling and grain size by targeting OsCDKF;2
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seed	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	Conversely, OsCDPK11 protein levels were high at the beginning of seed development, but fell rapidly from 10 DAF onwards
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seed	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	gibberellin	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	OsCDPK13 accumulated in 2-week-old leaf sheath and callus, and became phosphorylated in response to cold and gibberellin (GA)
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	gibberellin	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	gibberellin	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	OsCDPK13 accumulated in 2-week-old leaf sheath and callus, and became phosphorylated in response to cold and gibberellin (GA)
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	gibberellin	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	salt	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	Furthermore, OsCDPK13 gene expression and protein accumulation were enhanced in response to cold, but suppressed under salt and drought stresses
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seed	Molecular cloning of two novel rice cDNA sequences encoding putative calcium-dependent protein kinases	OSCPK2 and OSCPK11 cDNAs are related to SPK, another gene encoding a rice CDPK that is specifically expressed in developing seeds [20]
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	sheath	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	OsCDPK13 accumulated in 2-week-old leaf sheath and callus, and became phosphorylated in response to cold and gibberellin (GA)
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	sheath	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	sheath	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	OsCDPK13 accumulated in 2-week-old leaf sheath and callus, and became phosphorylated in response to cold and gibberellin (GA)
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seedling	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	Recently, a full-length cDNA encoding OsCDPK13 from rice seedling was isolated
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	 ga 	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	The results suggest that OsCDPK13 might be an important signaling component in the response of rice to GA and cold stress
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	salt	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	Furthermore, OsCDPK13 gene expression and protein accumulation were enhanced in response to cold, but suppressed under salt and drought stresses
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	 ga 	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	The results suggest that OsCDPK13 might be an important signaling component in the response of rice to GA and cold stress
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	leaf	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	OsCDPK13 accumulated in 2-week-old leaf sheath and callus, and became phosphorylated in response to cold and gibberellin (GA)
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	dwarf	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	Antisense OsCDPK13 transgenic rice lines were shorter than the vector control lines, and the expression of OsCDPK13 was lower in dwarf mutants of rice than in wild type
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seedling	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	Recently, a full-length cDNA encoding OsCDPK13 from rice seedling was isolated
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	root	Molecular cloning of two novel rice cDNA sequences encoding putative calcium-dependent protein kinases	OSCPK2 and OSCPK11 mRNAs are equally abundant in rice roots and coleoptiles
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	drought	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	Furthermore, OsCDPK13 gene expression and protein accumulation were enhanced in response to cold, but suppressed under salt and drought stresses
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	leaf	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	OsCDPK13 accumulated in 2-week-old leaf sheath and callus, and became phosphorylated in response to cold and gibberellin (GA)
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	leaf	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	flower	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	OsCDPK2 and OsCDPK11 mRNA and protein levels increased in unison during flower development
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	cold stress	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	Sense OsCDPK13 transgenic rice lines had higher recovery rates after cold stress than vector control rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	cold stress	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	The results suggest that OsCDPK13 might be an important signaling component in the response of rice to GA and cold stress
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	drought	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	Furthermore, OsCDPK13 gene expression and protein accumulation were enhanced in response to cold, but suppressed under salt and drought stresses
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	dwarf	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath	Antisense OsCDPK13 transgenic rice lines were shorter than the vector control lines, and the expression of OsCDPK13 was lower in dwarf mutants of rice than in wild type
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seed development	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	Conversely, OsCDPK11 protein levels were high at the beginning of seed development, but fell rapidly from 10 DAF onwards
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seed development	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	cold stress	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	Sense OsCDPK13 transgenic rice lines had higher recovery rates after cold stress than vector control rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	cold stress	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	The results suggest that OsCDPK13 might be an important signaling component in the response of rice to GA and cold stress
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 These results suggest that OsCDPK1 may be an upstream regulator involved in rice innate immunity and conferred broad-spectrum of disease resistance
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 The dihybrid rice Ri-1/OsPR10a-Ox not only bypassed the effect of OsCDPK1 silencing on the susceptibility to Xoo but also showed enhanced disease resistance and, consistent with Ri-1 phenotypes, increased plant height and grain size
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 Our results reveal that OsCDPK1 plays novel key roles in the cross-talk and mediation of the balance between stress response and development and provides a clue for improving grain yield and disease resistance simultaneously in rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	grain	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 The dihybrid rice Ri-1/OsPR10a-Ox not only bypassed the effect of OsCDPK1 silencing on the susceptibility to Xoo but also showed enhanced disease resistance and, consistent with Ri-1 phenotypes, increased plant height and grain size
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	grain	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 Our results reveal that OsCDPK1 plays novel key roles in the cross-talk and mediation of the balance between stress response and development and provides a clue for improving grain yield and disease resistance simultaneously in rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	development	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 Our results reveal that OsCDPK1 plays novel key roles in the cross-talk and mediation of the balance between stress response and development and provides a clue for improving grain yield and disease resistance simultaneously in rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	grain yield	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 Our results reveal that OsCDPK1 plays novel key roles in the cross-talk and mediation of the balance between stress response and development and provides a clue for improving grain yield and disease resistance simultaneously in rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	yield	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 Our results reveal that OsCDPK1 plays novel key roles in the cross-talk and mediation of the balance between stress response and development and provides a clue for improving grain yield and disease resistance simultaneously in rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	grain size	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 The dihybrid rice Ri-1/OsPR10a-Ox not only bypassed the effect of OsCDPK1 silencing on the susceptibility to Xoo but also showed enhanced disease resistance and, consistent with Ri-1 phenotypes, increased plant height and grain size
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	disease	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	disease	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 These results suggest that OsCDPK1 may be an upstream regulator involved in rice innate immunity and conferred broad-spectrum of disease resistance
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	disease	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 The dihybrid rice Ri-1/OsPR10a-Ox not only bypassed the effect of OsCDPK1 silencing on the susceptibility to Xoo but also showed enhanced disease resistance and, consistent with Ri-1 phenotypes, increased plant height and grain size
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	disease	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 Our results reveal that OsCDPK1 plays novel key roles in the cross-talk and mediation of the balance between stress response and development and provides a clue for improving grain yield and disease resistance simultaneously in rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	salicylic acid	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 OsPR10a and OsCDPK1 showed corresponding expression patterns and were up-regulated in response to the jasmonic acid, salicylic acid and Xoo treatments, and OsPR1 and OsPR4 were significantly up-regulated in OEtr-1
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	disease resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	disease resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 These results suggest that OsCDPK1 may be an upstream regulator involved in rice innate immunity and conferred broad-spectrum of disease resistance
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	disease resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 The dihybrid rice Ri-1/OsPR10a-Ox not only bypassed the effect of OsCDPK1 silencing on the susceptibility to Xoo but also showed enhanced disease resistance and, consistent with Ri-1 phenotypes, increased plant height and grain size
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	disease resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 Our results reveal that OsCDPK1 plays novel key roles in the cross-talk and mediation of the balance between stress response and development and provides a clue for improving grain yield and disease resistance simultaneously in rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	stress	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 Our results reveal that OsCDPK1 plays novel key roles in the cross-talk and mediation of the balance between stress response and development and provides a clue for improving grain yield and disease resistance simultaneously in rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	jasmonic	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 OsPR10a and OsCDPK1 showed corresponding expression patterns and were up-regulated in response to the jasmonic acid, salicylic acid and Xoo treatments, and OsPR1 and OsPR4 were significantly up-regulated in OEtr-1
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	jasmonic acid	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 OsPR10a and OsCDPK1 showed corresponding expression patterns and were up-regulated in response to the jasmonic acid, salicylic acid and Xoo treatments, and OsPR1 and OsPR4 were significantly up-regulated in OEtr-1
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	height	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 The dihybrid rice Ri-1/OsPR10a-Ox not only bypassed the effect of OsCDPK1 silencing on the susceptibility to Xoo but also showed enhanced disease resistance and, consistent with Ri-1 phenotypes, increased plant height and grain size
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	plant height	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 The dihybrid rice Ri-1/OsPR10a-Ox not only bypassed the effect of OsCDPK1 silencing on the susceptibility to Xoo but also showed enhanced disease resistance and, consistent with Ri-1 phenotypes, increased plant height and grain size
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	immunity	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 These results suggest that OsCDPK1 may be an upstream regulator involved in rice innate immunity and conferred broad-spectrum of disease resistance
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	innate immunity	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 These results suggest that OsCDPK1 may be an upstream regulator involved in rice innate immunity and conferred broad-spectrum of disease resistance
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	 xoo 	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 OsPR10a and OsCDPK1 showed corresponding expression patterns and were up-regulated in response to the jasmonic acid, salicylic acid and Xoo treatments, and OsPR1 and OsPR4 were significantly up-regulated in OEtr-1
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	 xoo 	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 The dihybrid rice Ri-1/OsPR10a-Ox not only bypassed the effect of OsCDPK1 silencing on the susceptibility to Xoo but also showed enhanced disease resistance and, consistent with Ri-1 phenotypes, increased plant height and grain size
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	stress response	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	 Our results reveal that OsCDPK1 plays novel key roles in the cross-talk and mediation of the balance between stress response and development and provides a clue for improving grain yield and disease resistance simultaneously in rice
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	grain	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 In the study presented here, we propose a model in which OsCDPK1 plays key roles in negatively controlling the grain size, amylose content, and endosperm appearance, and also affects the physicochemical properties of the starch
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	development	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	Overexpression of a constitutively active truncated form of OsCDPK1 (OEtr) in rice produced smaller seeds, but a double-stranded RNA gene-silenced form of OsCDPK1 (Ri) yielded larger seeds, suggesting that OsCDPK1 plays a functional role in rice seed development
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	development	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 This demonstrates that OsCDPK1 plays a novel functional role in starch biosynthesis during seed development and affects the transparent appearance of the endosperm
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seed	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	Overexpression of a constitutively active truncated form of OsCDPK1 (OEtr) in rice produced smaller seeds, but a double-stranded RNA gene-silenced form of OsCDPK1 (Ri) yielded larger seeds, suggesting that OsCDPK1 plays a functional role in rice seed development
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seed	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 This demonstrates that OsCDPK1 plays a novel functional role in starch biosynthesis during seed development and affects the transparent appearance of the endosperm
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	starch	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	starch	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 In the study presented here, we propose a model in which OsCDPK1 plays key roles in negatively controlling the grain size, amylose content, and endosperm appearance, and also affects the physicochemical properties of the starch
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	starch	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 This demonstrates that OsCDPK1 plays a novel functional role in starch biosynthesis during seed development and affects the transparent appearance of the endosperm
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	grain size	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 In the study presented here, we propose a model in which OsCDPK1 plays key roles in negatively controlling the grain size, amylose content, and endosperm appearance, and also affects the physicochemical properties of the starch
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	endosperm	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 In the study presented here, we propose a model in which OsCDPK1 plays key roles in negatively controlling the grain size, amylose content, and endosperm appearance, and also affects the physicochemical properties of the starch
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	endosperm	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 This demonstrates that OsCDPK1 plays a novel functional role in starch biosynthesis during seed development and affects the transparent appearance of the endosperm
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seed development	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	Overexpression of a constitutively active truncated form of OsCDPK1 (OEtr) in rice produced smaller seeds, but a double-stranded RNA gene-silenced form of OsCDPK1 (Ri) yielded larger seeds, suggesting that OsCDPK1 plays a functional role in rice seed development
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	seed development	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 This demonstrates that OsCDPK1 plays a novel functional role in starch biosynthesis during seed development and affects the transparent appearance of the endosperm
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	starch biosynthesis	Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	 This demonstrates that OsCDPK1 plays a novel functional role in starch biosynthesis during seed development and affects the transparent appearance of the endosperm
OsCDPK1|OsCDPK13|OsCDPK11|OsCPK11|OsCDPK12	Os03g0128700	LOC_Os03g03660	phosphatase	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 We show that OsFBX257 can bind the kinases OsCDPK1 and OsSAPK2, and that its phosphorylation can be reversed by phosphatase OsPP2C08
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	stem	Overexpression of the calcium-dependent protein kinase OsCDPK2 in transgenic rice is repressed by light in leaves and disrupts seed development	High levels of OsCDPK2 were detected in leaves removed from etiolated plants, as well as in stems and flowers
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	seed	Overexpression of the calcium-dependent protein kinase OsCDPK2 in transgenic rice is repressed by light in leaves and disrupts seed development	The morphological phenotype of transgenic plants producing high levels of recombinant OsCDPK2 was normal until the onset of seed development
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	seed	Overexpression of the calcium-dependent protein kinase OsCDPK2 in transgenic rice is repressed by light in leaves and disrupts seed development	Overexpression of the calcium-dependent protein kinase OsCDPK2 in transgenic rice is repressed by light in leaves and disrupts seed development
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	flower	Overexpression of the calcium-dependent protein kinase OsCDPK2 in transgenic rice is repressed by light in leaves and disrupts seed development	High levels of OsCDPK2 were detected in leaves removed from etiolated plants, as well as in stems and flowers
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	seed	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	OsCDPK2 protein was expressed at low levels during early seed development, but increased to high levels that were maintained in later stages (20 days after fertilisation, DAF)
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	seed	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	root	Molecular cloning of two novel rice cDNA sequences encoding putative calcium-dependent protein kinases	OSCPK2 and OSCPK11 mRNAs are equally abundant in rice roots and coleoptiles
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	seed development	Overexpression of the calcium-dependent protein kinase OsCDPK2 in transgenic rice is repressed by light in leaves and disrupts seed development	The morphological phenotype of transgenic plants producing high levels of recombinant OsCDPK2 was normal until the onset of seed development
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	seed development	Overexpression of the calcium-dependent protein kinase OsCDPK2 in transgenic rice is repressed by light in leaves and disrupts seed development	Overexpression of the calcium-dependent protein kinase OsCDPK2 in transgenic rice is repressed by light in leaves and disrupts seed development
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	seed	Molecular cloning of two novel rice cDNA sequences encoding putative calcium-dependent protein kinases	OSCPK2 and OSCPK11 cDNAs are related to SPK, another gene encoding a rice CDPK that is specifically expressed in developing seeds [20]
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	seed development	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	OsCDPK2 protein was expressed at low levels during early seed development, but increased to high levels that were maintained in later stages (20 days after fertilisation, DAF)
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	seed development	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development
OsCDPK2|OsCPK2	Os07g0515100	LOC_Os07g33110	flower	Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development	OsCDPK2 and OsCDPK11 mRNA and protein levels increased in unison during flower development
OsCDPK7	Os04g0584600	LOC_Os04g49510	salinity	Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants	Over-expression of OsCDPK7 enhanced induction of some stress-responsive genes in response to salinity/drought, but not to cold
OsCDPK7	Os04g0584600	LOC_Os04g49510	salt	A Ca2+-Dependent Protein Kinase that Endows Rice Plants with Cold- and Salt-Stress Tolerance Functions in Vascular Bundles	A rice Ca2+-dependent protein kinase, OsCDPK7, is a positive regulator commonly involved in the tolerance to cold and salt/drought
OsCDPK7	Os04g0584600	LOC_Os04g49510	salt	A Ca2+-Dependent Protein Kinase that Endows Rice Plants with Cold- and Salt-Stress Tolerance Functions in Vascular Bundles	The transcript of a putative target gene of the OsCDPK7 signaling pathway, rab16A, was also detected essentially in the same tissues upon salt stress, suggesting that the OsCDPK7 pathway operates predominantly in these regions
OsCDPK7	Os04g0584600	LOC_Os04g49510	crown	A Ca2+-Dependent Protein Kinase that Endows Rice Plants with Cold- and Salt-Stress Tolerance Functions in Vascular Bundles	In the wild-type rice plants under both stress conditions, OsCDPK7 was expressed predominantly in vascular tissues of crowns and roots, vascular bundles and central cylinder, respectively, where water stress occurs most severely
OsCDPK7	Os04g0584600	LOC_Os04g49510	vascular bundle	A Ca2+-Dependent Protein Kinase that Endows Rice Plants with Cold- and Salt-Stress Tolerance Functions in Vascular Bundles	In the wild-type rice plants under both stress conditions, OsCDPK7 was expressed predominantly in vascular tissues of crowns and roots, vascular bundles and central cylinder, respectively, where water stress occurs most severely
OsCDPK7	Os04g0584600	LOC_Os04g49510	salt stress	A Ca2+-Dependent Protein Kinase that Endows Rice Plants with Cold- and Salt-Stress Tolerance Functions in Vascular Bundles	The transcript of a putative target gene of the OsCDPK7 signaling pathway, rab16A, was also detected essentially in the same tissues upon salt stress, suggesting that the OsCDPK7 pathway operates predominantly in these regions
OsCDPK7	Os04g0584600	LOC_Os04g49510	root	A Ca2+-Dependent Protein Kinase that Endows Rice Plants with Cold- and Salt-Stress Tolerance Functions in Vascular Bundles	In the wild-type rice plants under both stress conditions, OsCDPK7 was expressed predominantly in vascular tissues of crowns and roots, vascular bundles and central cylinder, respectively, where water stress occurs most severely
OsCDPK7	Os04g0584600	LOC_Os04g49510	flower	A Ca2+-Dependent Protein Kinase that Endows Rice Plants with Cold- and Salt-Stress Tolerance Functions in Vascular Bundles	Similar localization patterns with stronger signals were observed in stress-tolerant OsCDPK7 over-expressing transformants with the cauliflower mosaic virus 35S promoter
OsCDPK7	Os04g0584600	LOC_Os04g49510	drought	A Ca2+-Dependent Protein Kinase that Endows Rice Plants with Cold- and Salt-Stress Tolerance Functions in Vascular Bundles	A rice Ca2+-dependent protein kinase, OsCDPK7, is a positive regulator commonly involved in the tolerance to cold and salt/drought
OsCDPK7	Os04g0584600	LOC_Os04g49510	salt stress	Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants	A rice gene encoding a calcium-dependent protein kinase (CDPK), OsCDPK7, was induced by cold and salt stresses
OsCDPK7	Os04g0584600	LOC_Os04g49510	salt	Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants	A rice gene encoding a calcium-dependent protein kinase (CDPK), OsCDPK7, was induced by cold and salt stresses
OsCDPK7	Os04g0584600	LOC_Os04g49510	salt	Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants	The extent of tolerance to cold and salt/drought stresses of these plants correlated well with the level of OsCDPK7 expression
OsCDPK7	Os04g0584600	LOC_Os04g49510	drought	Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants	The extent of tolerance to cold and salt/drought stresses of these plants correlated well with the level of OsCDPK7 expression
OsCDPK7	Os04g0584600	LOC_Os04g49510	drought	Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants	Over-expression of OsCDPK7 enhanced induction of some stress-responsive genes in response to salinity/drought, but not to cold
OsCDR1	Os01g0178600	LOC_Os01g08330	disease resistance	Heterologous expression and characterization of recombinant OsCDR1, a rice aspartic proteinase involved in disease resistance	The Oryza sativa constitutive disease resistance 1 (OsCDR1) gene product is an aspartic proteinase that has been implicated in disease resistance signaling
OsCDR1	Os01g0178600	LOC_Os01g08330	disease resistance	Heterologous expression and characterization of recombinant OsCDR1, a rice aspartic proteinase involved in disease resistance	Heterologous expression and characterization of recombinant OsCDR1, a rice aspartic proteinase involved in disease resistance
OsCDR1	Os01g0178600	LOC_Os01g08330	disease	Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis	Expression of OsCDR1 was activated upon treatments with benzothiadiazole and salicylic acid, which are signal molecules in plant disease resistance responses
OsCDR1	Os01g0178600	LOC_Os01g08330	defense response	Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis	Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis
OsCDR1	Os01g0178600	LOC_Os01g08330	leaf	Heterologous expression and characterization of recombinant OsCDR1, a rice aspartic proteinase involved in disease resistance	Infiltration of the OsCDR1 fusion protein into leaves of Arabidopsis plants induced PR2 transcripts in both the infiltrated leaf (primary) and in non-treated secondary leaves while the inactive recombinant protein failed to induce either local or systemic PR2
OsCDR1	Os01g0178600	LOC_Os01g08330	defense	Heterologous expression and characterization of recombinant OsCDR1, a rice aspartic proteinase involved in disease resistance	These findings demonstrate that OsCDR1 is capable of inducing systemic defense responses in plants
OsCDR1	Os01g0178600	LOC_Os01g08330	defense	Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis	Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis
OsCDR1	Os01g0178600	LOC_Os01g08330	disease	Heterologous expression and characterization of recombinant OsCDR1, a rice aspartic proteinase involved in disease resistance	The Oryza sativa constitutive disease resistance 1 (OsCDR1) gene product is an aspartic proteinase that has been implicated in disease resistance signaling
OsCDR1	Os01g0178600	LOC_Os01g08330	disease	Heterologous expression and characterization of recombinant OsCDR1, a rice aspartic proteinase involved in disease resistance	Heterologous expression and characterization of recombinant OsCDR1, a rice aspartic proteinase involved in disease resistance
OsCDR1	Os01g0178600	LOC_Os01g08330	defense response	Heterologous expression and characterization of recombinant OsCDR1, a rice aspartic proteinase involved in disease resistance	These findings demonstrate that OsCDR1 is capable of inducing systemic defense responses in plants
OsCDR1	Os01g0178600	LOC_Os01g08330	salicylic acid	Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis	Expression of OsCDR1 was activated upon treatments with benzothiadiazole and salicylic acid, which are signal molecules in plant disease resistance responses
OsCDR1	Os01g0178600	LOC_Os01g08330	disease resistance	Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis	Expression of OsCDR1 was activated upon treatments with benzothiadiazole and salicylic acid, which are signal molecules in plant disease resistance responses
OsCDT1|OsCDT2	Os06g0143100	LOC_Os06g05120	cell wall	Novel Cysteine-Rich Peptides from Digitaria ciliaris and Oryza sativa Enhance Tolerance to Cadmium by Limiting its Cellular Accumulation	Localization of green fluorescent protein fusions suggests that DcCDT1 and OsCDT1 are targeted to both cytoplasmic membranes and cell walls of plant cells
OsCDT3	Os01g0178300	LOC_Os01g08300	aluminum tolerance	A plasma membrane-localized small peptide is involved in rice aluminum tolerance	OsCDT3 was mainly expressed in the roots and its expression was specifically induced by Al exposure, not by low pH and other metals.
OsCDT3	Os01g0178300	LOC_Os01g08300	aluminum tolerance	A plasma membrane-localized small peptide is involved in rice aluminum tolerance	Expression of OsCDT3 in yeast conferred tolerance to Al, but not to Cd.
OsCDT3	Os01g0178300	LOC_Os01g08300	aluminum tolerance	A plasma membrane-localized small peptide is involved in rice aluminum tolerance	Taken together, our results indicate that OsCDT3 anchoring to the plasma membrane may play a role in stopping entry of Al into the root cells by binding Al, therefore, contributing to high Al tolerance in rice.
OsCDT3	Os01g0178300	LOC_Os01g08300	root	A plasma membrane-localized small peptide is involved in rice aluminum tolerance	OsCDT3 was mainly expressed in the roots and its expression was specifically induced by Al exposure, not by low pH and other metals.
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	root development	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	Analyses of auxin concentration and time course dependence of accumulation of two EGase isoforms suggested that the translation and post-translational CBM2 truncation of the OsCel9A gene may participate in lateral root development
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	auxin	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	Sasanishiki), OsCel9A, corresponding to the auxin-induced 51 kDa endo-1,4-beta-glucanase (EGase)
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	auxin	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	The expression of four rice EGase genes including OsCel9A showed different patterns of organ specificity and responses to auxin
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	auxin	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	OsCel9A was preferentially expressed during the initiation of lateral roots or subcultured root calli, but was hardly expressed during auxin-induced coleoptile elongation or in seed calli, in contrast to OsCel9D, a KORRIGAN (KOR) homolog
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	auxin	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	Analyses of auxin concentration and time course dependence of accumulation of two EGase isoforms suggested that the translation and post-translational CBM2 truncation of the OsCel9A gene may participate in lateral root development
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	auxin	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	seed	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	OsCel9A was preferentially expressed during the initiation of lateral roots or subcultured root calli, but was hardly expressed during auxin-induced coleoptile elongation or in seed calli, in contrast to OsCel9D, a KORRIGAN (KOR) homolog
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	lateral root	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	OsCel9A was preferentially expressed during the initiation of lateral roots or subcultured root calli, but was hardly expressed during auxin-induced coleoptile elongation or in seed calli, in contrast to OsCel9D, a KORRIGAN (KOR) homolog
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	lateral root	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	In situ localization of OsCel9A transcripts demonstrated that its expression was specifically up-regulated in lateral root primordia (LRP)
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	lateral root	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	Analyses of auxin concentration and time course dependence of accumulation of two EGase isoforms suggested that the translation and post-translational CBM2 truncation of the OsCel9A gene may participate in lateral root development
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	lateral root	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	root	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	OsCel9A was preferentially expressed during the initiation of lateral roots or subcultured root calli, but was hardly expressed during auxin-induced coleoptile elongation or in seed calli, in contrast to OsCel9D, a KORRIGAN (KOR) homolog
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	root	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	In situ localization of OsCel9A transcripts demonstrated that its expression was specifically up-regulated in lateral root primordia (LRP)
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	root	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	In contrast, both mass spectrometric analyses of peptide fragments from purified 51 kDa EGase proteins and immunogel blot analysis of EGase proteins in root extracts using two antibodies against internal peptide sequences of OsCel9A revealed that the entire CBM2 region was post-translationally truncated from the 67 kDa nascent protein to generate 51 kDa EGase isoforms
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	root	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	Analyses of auxin concentration and time course dependence of accumulation of two EGase isoforms suggested that the translation and post-translational CBM2 truncation of the OsCel9A gene may participate in lateral root development
OsCel9A|OsGLU5	Os01g0220100	LOC_Os01g12070	root	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated	Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated
OsCEN2	Os11g0152500	LOC_Os11g05470	spikelet	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 OsCEN2 influenced grain size by restricting cell expansion in the spikelet hull and seed filling
OsCEN2	Os11g0152500	LOC_Os11g05470	grain	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 Here, we report that the rice CENTRORADIALIS (CEN) family member OsCEN2 (also known as Rice TFL1/CEN homolog, RCN1), a phosphatidylethanolamine-binding protein (PEBP) family protein, negatively controls grain size in rice
OsCEN2	Os11g0152500	LOC_Os11g05470	grain	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 OsCEN2 influenced grain size by restricting cell expansion in the spikelet hull and seed filling
OsCEN2	Os11g0152500	LOC_Os11g05470	grain	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 In in vivo and in vitro experiments, OsCEN2 physically interacted with a G-box factor 14-3-3 homolog, GF14f, which negatively regulates grain size
OsCEN2	Os11g0152500	LOC_Os11g05470	grain size	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 Here, we report that the rice CENTRORADIALIS (CEN) family member OsCEN2 (also known as Rice TFL1/CEN homolog, RCN1), a phosphatidylethanolamine-binding protein (PEBP) family protein, negatively controls grain size in rice
OsCEN2	Os11g0152500	LOC_Os11g05470	grain size	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 OsCEN2 influenced grain size by restricting cell expansion in the spikelet hull and seed filling
OsCEN2	Os11g0152500	LOC_Os11g05470	grain size	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 In in vivo and in vitro experiments, OsCEN2 physically interacted with a G-box factor 14-3-3 homolog, GF14f, which negatively regulates grain size
OsCEN2	Os11g0152500	LOC_Os11g05470	seed	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 OsCEN2 influenced grain size by restricting cell expansion in the spikelet hull and seed filling
OsCEN2	Os11g0152500	LOC_Os11g05470	cell expansion	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 OsCEN2 influenced grain size by restricting cell expansion in the spikelet hull and seed filling
OsCEN2	Os11g0152500	LOC_Os11g05470	seed filling	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 OsCEN2 influenced grain size by restricting cell expansion in the spikelet hull and seed filling
OsCEN2	Os11g0152500	LOC_Os11g05470	seed	Rice CENTRORADIALIS 2 regulates seed germination and salt tolerance via ABA-mediated pathway.	 Here, we reported that the rice OsCEN2 gene can negatively regulate seed germination
OsCEN2	Os11g0152500	LOC_Os11g05470	seed	Rice CENTRORADIALIS 2 regulates seed germination and salt tolerance via ABA-mediated pathway.	 The results of qRT-PCR showed that the OsCEN2 expression was increased in the early stage of seed germination
OsCEN2	Os11g0152500	LOC_Os11g05470	seed	Rice CENTRORADIALIS 2 regulates seed germination and salt tolerance via ABA-mediated pathway.	 This study reveals that OsCEN2 regulates the germination speed by affecting the content of ABA during seed germination and provides a theoretical basis for research on rice direct seeding
OsCEN2	Os11g0152500	LOC_Os11g05470	seed germination	Rice CENTRORADIALIS 2 regulates seed germination and salt tolerance via ABA-mediated pathway.	 Here, we reported that the rice OsCEN2 gene can negatively regulate seed germination
OsCEN2	Os11g0152500	LOC_Os11g05470	seed germination	Rice CENTRORADIALIS 2 regulates seed germination and salt tolerance via ABA-mediated pathway.	 The results of qRT-PCR showed that the OsCEN2 expression was increased in the early stage of seed germination
OsCEN2	Os11g0152500	LOC_Os11g05470	seed germination	Rice CENTRORADIALIS 2 regulates seed germination and salt tolerance via ABA-mediated pathway.	 This study reveals that OsCEN2 regulates the germination speed by affecting the content of ABA during seed germination and provides a theoretical basis for research on rice direct seeding
OsCEN2	Os11g0152500	LOC_Os11g05470	ABA	Rice CENTRORADIALIS 2 regulates seed germination and salt tolerance via ABA-mediated pathway.	 This study reveals that OsCEN2 regulates the germination speed by affecting the content of ABA during seed germination and provides a theoretical basis for research on rice direct seeding
OsCEN2	Os11g0152500	LOC_Os11g05470	 ABA 	Rice CENTRORADIALIS 2 regulates seed germination and salt tolerance via ABA-mediated pathway.	 This study reveals that OsCEN2 regulates the germination speed by affecting the content of ABA during seed germination and provides a theoretical basis for research on rice direct seeding
OsCEP6.1	Os08g0475500	LOC_Os08g37070	growth	Overexpression of Peptide-Encoding OsCEP6.1 Results in Pleiotropic Effects on Growth in Rice (O. sativa).	Overexpression of Peptide-Encoding OsCEP6.1 Results in Pleiotropic Effects on Growth in Rice (O. sativa).
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	pollen	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 OsCER1 was highly expressed in the tapetum (stage 10) and bicellular pollen cells (stage 11)
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	pollen	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 Downregulation of OsCER1 in rice led to sterility, and fewer amyloplasts within the mature pollen grains
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	pollen	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 Furthermore, significantly altered levels of expression of genes involved in the pollen development were exhibited in the OsCER1 knocked down plants
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	pollen	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 These results indicate that OsCER1 is critical for VLC alkanes biosynthesis, plastids differentiation, and pollen development
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	development	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	development	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 In addition, the downregulation of OsCER1 in rice caused delayed tapetal programmed cell death and abnormal development of plastids in the tapetal cells
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	development	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 Furthermore, significantly altered levels of expression of genes involved in the pollen development were exhibited in the OsCER1 knocked down plants
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	development	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 These results indicate that OsCER1 is critical for VLC alkanes biosynthesis, plastids differentiation, and pollen development
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	cell death	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	cell death	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 In addition, the downregulation of OsCER1 in rice caused delayed tapetal programmed cell death and abnormal development of plastids in the tapetal cells
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	tapetum	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	tapetum	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 OsCER1 was highly expressed in the tapetum (stage 10) and bicellular pollen cells (stage 11)
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	tapetal	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 In addition, the downregulation of OsCER1 in rice caused delayed tapetal programmed cell death and abnormal development of plastids in the tapetal cells
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	pollen development	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 Furthermore, significantly altered levels of expression of genes involved in the pollen development were exhibited in the OsCER1 knocked down plants
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	pollen development	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 These results indicate that OsCER1 is critical for VLC alkanes biosynthesis, plastids differentiation, and pollen development
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	tapetal programmed cell death	OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).	 In addition, the downregulation of OsCER1 in rice caused delayed tapetal programmed cell death and abnormal development of plastids in the tapetal cells
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	pollen	Deficiency of very-long-chain alkanes biosynthesis causes humidity-sensitive male sterility via affecting pollen adhesion and hydration in rice.	 OsGL1-4 is preferentially expressed in pollen and tapetal cells, and is required for the synthesis of very-long-chain alkanes
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	sterility	Deficiency of very-long-chain alkanes biosynthesis causes humidity-sensitive male sterility via affecting pollen adhesion and hydration in rice.	 Gas chromatography-mass spectrometry analysis suggested the humidity-sensitive male sterility of osgl1-4 was probably due to a significant reduction in C25 and C27 alkanes
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	tapetal	Deficiency of very-long-chain alkanes biosynthesis causes humidity-sensitive male sterility via affecting pollen adhesion and hydration in rice.	 OsGL1-4 is preferentially expressed in pollen and tapetal cells, and is required for the synthesis of very-long-chain alkanes
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	male sterility	Deficiency of very-long-chain alkanes biosynthesis causes humidity-sensitive male sterility via affecting pollen adhesion and hydration in rice.	 Gas chromatography-mass spectrometry analysis suggested the humidity-sensitive male sterility of osgl1-4 was probably due to a significant reduction in C25 and C27 alkanes
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	sterility	OsCER1 regulates humidity-sensitive genic male sterility through very-long-chain (VLC) alkane metabolism of tryphine in rice	OsCER1 regulates humidity-sensitive genic male sterility through very-long-chain (VLC) alkane metabolism of tryphine in rice
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	male sterility	OsCER1 regulates humidity-sensitive genic male sterility through very-long-chain (VLC) alkane metabolism of tryphine in rice	OsCER1 regulates humidity-sensitive genic male sterility through very-long-chain (VLC) alkane metabolism of tryphine in rice
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	leaf	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Phenotypic investigation of NPB and ltr1 suggested that ltr1 showed rumpled leaf with uneven distribution of bulliform cells and sclerenchyma cells, and disordered vascular bundles
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	vascular bundle	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Phenotypic investigation of NPB and ltr1 suggested that ltr1 showed rumpled leaf with uneven distribution of bulliform cells and sclerenchyma cells, and disordered vascular bundles
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	grain	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 A decrease in seed-setting rate in ltr1 led to decreased per-plant grain yield
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	stress	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Moreover, ltr1 was sensitive to salt stress, and LTR1 was strongly induced by salt stress
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	stress	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Moreover, overexpression of LTR1 enhanced yield in rice and LTR1 positively regulates salt stress by affecting water and ion homeostasis
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	grain yield	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 A decrease in seed-setting rate in ltr1 led to decreased per-plant grain yield
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	map-based cloning	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Map-based cloning of LTR1 showed that there was a 2-bp deletion in the eighth exon of LOC_Os02g40784 in ltr1, resulting in a frameshift mutation and early termination of transcription
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	salt	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Moreover, ltr1 was sensitive to salt stress, and LTR1 was strongly induced by salt stress
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	salt	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Moreover, overexpression of LTR1 enhanced yield in rice and LTR1 positively regulates salt stress by affecting water and ion homeostasis
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	yield	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 A decrease in seed-setting rate in ltr1 led to decreased per-plant grain yield
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	yield	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Moreover, overexpression of LTR1 enhanced yield in rice and LTR1 positively regulates salt stress by affecting water and ion homeostasis
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	salt stress	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Moreover, ltr1 was sensitive to salt stress, and LTR1 was strongly induced by salt stress
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	salt stress	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Moreover, overexpression of LTR1 enhanced yield in rice and LTR1 positively regulates salt stress by affecting water and ion homeostasis
OsCER1|OsGL1-4|LTR1	Os02g0621300	LOC_Os02g40784	homeostasis	LEAF TIP RUMPLED 1 Regulates Leaf Morphology and Salt Tolerance in Rice.	 Moreover, overexpression of LTR1 enhanced yield in rice and LTR1 positively regulates salt stress by affecting water and ion homeostasis
OsCER2|OsHMS1I	Os04g0611200	LOC_Os04g52164	male sterility	HMS1 interacts with HMS1I to regulate very-long-chain fatty acid biosynthesis and the humidity-sensitive genic male sterility in rice (Oryza sativa).	HMS1 interacts with HMS1I to regulate very-long-chain fatty acid biosynthesis and the humidity-sensitive genic male sterility in rice (Oryza sativa).
OsCER2|OsHMS1I	Os04g0611200	LOC_Os04g52164	fatty acid biosynthesis	HMS1 interacts with HMS1I to regulate very-long-chain fatty acid biosynthesis and the humidity-sensitive genic male sterility in rice (Oryza sativa).	HMS1 interacts with HMS1I to regulate very-long-chain fatty acid biosynthesis and the humidity-sensitive genic male sterility in rice (Oryza sativa).
OsCER2|OsHMS1I	Os04g0611200	LOC_Os04g52164	fatty acid biosynthesis	HMS1 interacts with HMS1I to regulate very-long-chain fatty acid biosynthesis and the humidity-sensitive genic male sterility in rice (Oryza sativa).	The ER localization of WSL4 and OsCER2 suggested that they might act synergistically for carbon-chain elongation in fatty acid synthesis.
OsCERK1	Os08g0538300	LOC_Os08g42580	defense response	Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice	Knockdown of OsCERK1 resulted in marked suppression of the defense responses induced by chitin oligosaccharides, indicating that OsCERK1 is essential for chitin signaling in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	defense	Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice	Knockdown of OsCERK1 resulted in marked suppression of the defense responses induced by chitin oligosaccharides, indicating that OsCERK1 is essential for chitin signaling in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	peptidoglycan and chitin signaling	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity
OsCERK1	Os08g0538300	LOC_Os08g42580	chitin signaling	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity
OsCERK1	Os08g0538300	LOC_Os08g42580	peptidoglycan signaling	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity
OsCERK1	Os08g0538300	LOC_Os08g42580	innate immunity	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity
OsCERK1	Os08g0538300	LOC_Os08g42580	chitin elicitor signaling pathway	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity	Here, we demonstrate that the rice LysM receptor-like kinase OsCERK1, a key component of the chitin elicitor signaling pathway, also plays an important role in PGN-triggered immunity in rice.
OsCERK1	Os08g0538300	LOC_Os08g42580	immunity signalling	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling
OsCERK1	Os08g0538300	LOC_Os08g42580	symbiosis	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling
OsCERK1	Os08g0538300	LOC_Os08g42580	receptor kinase	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling
OsCERK1	Os08g0538300	LOC_Os08g42580	immunity	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling
OsCERK1	Os08g0538300	LOC_Os08g42580	blast	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling	CERK1 in rice has the highest homology to NFR1 and we show that this gene is also necessary for the establishment of the mycorrhizal interaction as well as for resistance to the rice blast fungus.
OsCERK1	Os08g0538300	LOC_Os08g42580	blast resistance	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling	CERK1 in rice has the highest homology to NFR1 and we show that this gene is also necessary for the establishment of the mycorrhizal interaction as well as for resistance to the rice blast fungus.
OsCERK1	Os08g0538300	LOC_Os08g42580	defense	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	We show here that knockout (KO) mutants of OsCERK1, a rice receptor kinase essential for chitin signaling, were impaired not only for chitin-triggered defense responses but also for AM symbiosis, indicating the bifunctionality of OsCERK1 in defense and symbiosis
OsCERK1	Os08g0538300	LOC_Os08g42580	defense	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	These results also suggest that OsCERK1 and homologs serve as a molecular switch that activates defense or symbiotic responses depending on the infecting microbes
OsCERK1	Os08g0538300	LOC_Os08g42580	defense response	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	We show here that knockout (KO) mutants of OsCERK1, a rice receptor kinase essential for chitin signaling, were impaired not only for chitin-triggered defense responses but also for AM symbiosis, indicating the bifunctionality of OsCERK1 in defense and symbiosis
OsCERK1	Os08g0538300	LOC_Os08g42580	chitin signaling	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	We show here that knockout (KO) mutants of OsCERK1, a rice receptor kinase essential for chitin signaling, were impaired not only for chitin-triggered defense responses but also for AM symbiosis, indicating the bifunctionality of OsCERK1 in defense and symbiosis
OsCERK1	Os08g0538300	LOC_Os08g42580	symbiosis	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	We show here that knockout (KO) mutants of OsCERK1, a rice receptor kinase essential for chitin signaling, were impaired not only for chitin-triggered defense responses but also for AM symbiosis, indicating the bifunctionality of OsCERK1 in defense and symbiosis
OsCERK1	Os08g0538300	LOC_Os08g42580	symbiosis	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	On the other hand, a KO mutant of OsCEBiP, which forms a receptor complex with OsCERK1 and is essential for chitin-triggered immunity, established mycorrhizal symbiosis normally
OsCERK1	Os08g0538300	LOC_Os08g42580	symbiosis	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	Therefore, OsCERK1 but not chitin-triggered immunity is required for AM symbiosis
OsCERK1	Os08g0538300	LOC_Os08g42580	receptor kinase	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	We show here that knockout (KO) mutants of OsCERK1, a rice receptor kinase essential for chitin signaling, were impaired not only for chitin-triggered defense responses but also for AM symbiosis, indicating the bifunctionality of OsCERK1 in defense and symbiosis
OsCERK1	Os08g0538300	LOC_Os08g42580	immunity	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	Therefore, OsCERK1 but not chitin-triggered immunity is required for AM symbiosis
OsCERK1	Os08g0538300	LOC_Os08g42580	Kinase	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	We show here that knockout (KO) mutants of OsCERK1, a rice receptor kinase essential for chitin signaling, were impaired not only for chitin-triggered defense responses but also for AM symbiosis, indicating the bifunctionality of OsCERK1 in defense and symbiosis
OsCERK1	Os08g0538300	LOC_Os08g42580	Kinase	The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	Furthermore, experiments with chimeric receptors showed that the kinase domains of OsCERK1 and homologs from non-leguminous, mycorrhizal plants could trigger nodulation signaling in legume-rhizobium interactions as the kinase domain of Nod factor receptor1 (NFR1), which is essential for triggering the nodulation program in leguminous plants, did
OsCERK1	Os08g0538300	LOC_Os08g42580	Kinase	OsCERK1-mediated chitin perception and immune signaling requires Receptor-like Cytoplasmic Kinase 185 to activate a MAPK cascade in rice.	Here, we found that the PRR-associated receptor-like cytoplasmic kinase Oryza sativa RLCK185 transmits immune signaling from the PAMP receptor OsCERK1 to a MAPK signaling cascade through interaction with a MAPK kinase kinase, OsMAPKKK, which is the initial kinase of the MAPK cascade
OsCERK1	Os08g0538300	LOC_Os08g42580	root	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.	 Following the recent discovery that the Oscerk1 mutant is unable to host arbuscular mycorrhizal (AM) fungi, we have examined whether OsCERK1 is directly involved in the perception of the short-chain chitin oligomers (Myc-COs) identified in AM fungal exudates and shown to activate nuclear calcium (Ca(2+) ) spiking in the rice root epidermis
OsCERK1	Os08g0538300	LOC_Os08g42580	root	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.	 Compared with wild-type rice, Ca(2+) spiking responses to AM fungal elicitation were absent in root atrichoblasts of the Oscerk1 mutant
OsCERK1	Os08g0538300	LOC_Os08g42580	defense	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.	 By contrast, rice lines mutated in OsCEBiP, encoding the LysM receptor-like protein which associates with OsCERK1 to perceive chitin elicitors of the host immune defense pathway, responded positively to Myc-COs
OsCERK1	Os08g0538300	LOC_Os08g42580	Kinase	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.
OsCERK1	Os08g0538300	LOC_Os08g42580	Kinase	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.	The rice lysin-motif (LysM) receptor-like kinase OsCERK1 is now known to have a dual role in both pathogenic and symbiotic interactions
OsCERK1	Os08g0538300	LOC_Os08g42580	calcium	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.	 Following the recent discovery that the Oscerk1 mutant is unable to host arbuscular mycorrhizal (AM) fungi, we have examined whether OsCERK1 is directly involved in the perception of the short-chain chitin oligomers (Myc-COs) identified in AM fungal exudates and shown to activate nuclear calcium (Ca(2+) ) spiking in the rice root epidermis
OsCERK1	Os08g0538300	LOC_Os08g42580	epidermis	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.	 Following the recent discovery that the Oscerk1 mutant is unable to host arbuscular mycorrhizal (AM) fungi, we have examined whether OsCERK1 is directly involved in the perception of the short-chain chitin oligomers (Myc-COs) identified in AM fungal exudates and shown to activate nuclear calcium (Ca(2+) ) spiking in the rice root epidermis
OsCERK1	Os08g0538300	LOC_Os08g42580	immune response	OsCERK1 plays a crucial role in the lipopolysaccharide-induced immune response of rice.	OsCERK1 plays a crucial role in the lipopolysaccharide-induced immune response of rice.
OsCERK1	Os08g0538300	LOC_Os08g42580	phosphorus	Natural variation at OsCERK1 regulates arbuscular mycorrhizal symbiosis in rice.	 We conclude that OsCERK1 is a key gene affecting the symbiotic interaction with AMF and OsCERK1DY has the biotechnological potential to increase rice phosphorus acquisition and utilization efficiency for sustainable agriculture
OsCERK1	Os08g0538300	LOC_Os08g42580	symbiosis	Natural variation at OsCERK1 regulates arbuscular mycorrhizal symbiosis in rice.	Natural variation at OsCERK1 regulates arbuscular mycorrhizal symbiosis in rice.
OsCERK1	Os08g0538300	LOC_Os08g42580	magnaporthe oryzae	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	immunity	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	cell wall	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	cell wall	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	 In addition, these Poaceae cell wall-specific oligosaccharides trigger a burst of reactive oxygen species (ROS) that is largely compromised in oscerk1 and oscebip mutants
OsCERK1	Os08g0538300	LOC_Os08g42580	cell wall	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	 We conclude that 31-��-D-Cellobiosyl-glucose and 31-��-D-Cellotriosyl-glucose are specific DAMPs released from the hemicellulose of rice cell wall, which are perceived by an OsCERK1 and OsCEBiP immune complex during M
OsCERK1	Os08g0538300	LOC_Os08g42580	reactive oxygen species	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	 In addition, these Poaceae cell wall-specific oligosaccharides trigger a burst of reactive oxygen species (ROS) that is largely compromised in oscerk1 and oscebip mutants
OsCERK1	Os08g0538300	LOC_Os08g42580	magnaporthe oryzae	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	immunity	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	cell wall	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	cell wall	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	 In addition, these Poaceae cell wall-specific oligosaccharides trigger a burst of reactive oxygen species (ROS) that is largely compromised in oscerk1 and oscebip mutants
OsCERK1	Os08g0538300	LOC_Os08g42580	cell wall	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	 We conclude that 31-��-D-Cellobiosyl-glucose and 31-��-D-Cellotriosyl-glucose are specific DAMPs released from the hemicellulose of rice cell wall, which are perceived by an OsCERK1 and OsCEBiP immune complex during M
OsCERK1	Os08g0538300	LOC_Os08g42580	reactive oxygen species	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice	 In addition, these Poaceae cell wall-specific oligosaccharides trigger a burst of reactive oxygen species (ROS) that is largely compromised in oscerk1 and oscebip mutants
OsCERK1	Os08g0538300	LOC_Os08g42580	immunity	The Small GTPase OsRac1 Forms Two Distinct Immune Receptor Complexes Containing the PRR OsCERK1 and the NLR Pit	 These findings illuminate how the PRR OsCERK1 and the NLR Pit orchestrate rice immunity through the small GTPase OsRac1
OsCERK1	Os08g0538300	LOC_Os08g42580	plasma membrane	The Small GTPase OsRac1 Forms Two Distinct Immune Receptor Complexes Containing the PRR OsCERK1 and the NLR Pit	 Supporting this result, OsCERK1 and Pit utilized different transport systems for anchorage to the plasma membrane
OsCERK1	Os08g0538300	LOC_Os08g42580	immunity	Structural insight into chitin perception by chitin elicitor receptor kinase 1 of Oryza sativa.	 Altogether, these findings provide structural insights into the ability of OsCERK1 in chitin perception, which will lead to a better understanding of the role of OsCERK1 in mediating both immunity and symbiosis in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	symbiosis	Structural insight into chitin perception by chitin elicitor receptor kinase 1 of Oryza sativa.	 Altogether, these findings provide structural insights into the ability of OsCERK1 in chitin perception, which will lead to a better understanding of the role of OsCERK1 in mediating both immunity and symbiosis in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	resistance	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.
OsCERK1	Os08g0538300	LOC_Os08g42580	stress	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.	 Knockout of OsCERK1 gene resulted in enhanced tolerance to CuO NPs stress
OsCERK1	Os08g0538300	LOC_Os08g42580	stress	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.	 Furthermore, it was revealed that OsCERK1 reduces the tolerance to CuO NPs stress by regulating the anti-oxidant system and increasing the accumulation of H(2)O(2) in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	stress	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.	 In conclusion, this study demonstrated a dual role of OsCERK1 in response to CuO NPs stress and M
OsCERK1	Os08g0538300	LOC_Os08g42580	tolerance	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.	 Knockout of OsCERK1 gene resulted in enhanced tolerance to CuO NPs stress
OsCERK1	Os08g0538300	LOC_Os08g42580	tolerance	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.	 Furthermore, it was revealed that OsCERK1 reduces the tolerance to CuO NPs stress by regulating the anti-oxidant system and increasing the accumulation of H(2)O(2) in rice
OsCERK1	Os08g0538300	LOC_Os08g42580	blast	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.
OsCesA4|Bc7|bc11	Os01g0750300	LOC_Os01g54620	cellulose	Three Distinct Rice Cellulose Synthase Catalytic Subunit Genes Required for Cellulose Synthesis in the Secondary Wall	We show here that the genes responsible for three distinct brittle mutations of rice, induced by the insertion of the endogenous retrotransposon Tos17, correspond to CesA (cellulose synthase catalytic subunit) genes, OsCesA4, OsCesA7 and OsCesA9
OsCesA4|Bc7|bc11	Os01g0750300	LOC_Os01g54620	cellulose	The rice dynamin-related protein DRP2B mediates membrane trafficking, and thereby plays a critical role in secondary cell wall cellulose biosynthesis	BC3 mutation and overexpression altered the abundance of cellulose synthase catalytic subunit 4 (OsCESA4) in the PM and in the endomembrane systems
OsCesA7	Os10g0467800	LOC_Os10g32980	cellulose	Three Distinct Rice Cellulose Synthase Catalytic Subunit Genes Required for Cellulose Synthesis in the Secondary Wall	We show here that the genes responsible for three distinct brittle mutations of rice, induced by the insertion of the endogenous retrotransposon Tos17, correspond to CesA (cellulose synthase catalytic subunit) genes, OsCesA4, OsCesA7 and OsCesA9
OsCesA7	Os10g0467800	LOC_Os10g32980	transcription factor	The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.	A rice MYB transcription factor, OsMYB58/63, was found to directly upregulate the expression of a rice secondary wall-specific cellulose synthase gene, cellulose synthase A7 ( OsCesA7 ); in contrast, the Arabidopsis putative orthologs AtMYB58 and AtMYB63 have been shown to specifically activate lignin biosynthesis
OsCesA7	Os10g0467800	LOC_Os10g32980	cellulose	The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.	A rice MYB transcription factor, OsMYB58/63, was found to directly upregulate the expression of a rice secondary wall-specific cellulose synthase gene, cellulose synthase A7 ( OsCesA7 ); in contrast, the Arabidopsis putative orthologs AtMYB58 and AtMYB63 have been shown to specifically activate lignin biosynthesis
OsCesA7	Os10g0467800	LOC_Os10g32980	lignin	The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.	A rice MYB transcription factor, OsMYB58/63, was found to directly upregulate the expression of a rice secondary wall-specific cellulose synthase gene, cellulose synthase A7 ( OsCesA7 ); in contrast, the Arabidopsis putative orthologs AtMYB58 and AtMYB63 have been shown to specifically activate lignin biosynthesis
OsCesA7	Os10g0467800	LOC_Os10g32980	lignin biosynthesis	The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.	A rice MYB transcription factor, OsMYB58/63, was found to directly upregulate the expression of a rice secondary wall-specific cellulose synthase gene, cellulose synthase A7 ( OsCesA7 ); in contrast, the Arabidopsis putative orthologs AtMYB58 and AtMYB63 have been shown to specifically activate lignin biosynthesis
OsCesA7	Os10g0467800	LOC_Os10g32980	vascular bundle	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	The OsCESA7 gene is expressed predominantly in the culm at the mature stage, particularly in mechanical tissues such as vascular bundles and sclerenchyma cells, consistent with the brittle phenotype in the culm
OsCesA7	Os10g0467800	LOC_Os10g32980	growth	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.
OsCesA7	Os10g0467800	LOC_Os10g32980	growth	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	These results indicate that OsCESA7 plays an important role in cellulose biosynthesis and plant growth
OsCesA7	Os10g0467800	LOC_Os10g32980	culm	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	The OsCESA7 gene is expressed predominantly in the culm at the mature stage, particularly in mechanical tissues such as vascular bundles and sclerenchyma cells, consistent with the brittle phenotype in the culm
OsCesA7	Os10g0467800	LOC_Os10g32980	zinc	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.
OsCesA7	Os10g0467800	LOC_Os10g32980	cellulose	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.
OsCesA7	Os10g0467800	LOC_Os10g32980	cellulose	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	Map-based gene cloning and a complementation assay showed that phenotypes of the S1-24 mutant were caused by a recessive point mutation in the OsCESA7 gene, which encodes cellulose synthase A subunit 7
OsCesA7	Os10g0467800	LOC_Os10g32980	cellulose	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	These results indicate that OsCESA7 plays an important role in cellulose biosynthesis and plant growth
OsCesA7	Os10g0467800	LOC_Os10g32980	plant growth	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.
OsCesA7	Os10g0467800	LOC_Os10g32980	plant growth	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	These results indicate that OsCESA7 plays an important role in cellulose biosynthesis and plant growth
OscFBP2	Os05g0438600	LOC_Os05g36270	shoot	Reduction in sucrose contents by downregulation of fructose-1,6-bisphosphatase 2 causes tiller outgrowth cessation in rice mutants lacking glutamine synthetase1;2.	NH4+ supply upregulated OscFBP2 expression in the shoot basal portions of the wild type but not in those of the gs1;2 mutants
OscFBP2	Os05g0438600	LOC_Os05g36270	sucrose	Reduction in sucrose contents by downregulation of fructose-1,6-bisphosphatase 2 causes tiller outgrowth cessation in rice mutants lacking glutamine synthetase1;2.	Our results indicated that sucrose reduction was caused by the downregulation of OscFBP2 expression in the basal portions of the gs1;2 mutant shoots
OsCFM2	Os04g0464800	LOC_Os04g39060	chloroplast	Characterization of the CRM Gene Family and Elucidating the Function of OsCFM2 in Rice.	In addition, we analyzed the functions of OsCFM2 and found that this protein influences chloroplast development by regulating the splicing of a group I and five group II introns
OsCFM2	Os04g0464800	LOC_Os04g39060	development	Characterization of the CRM Gene Family and Elucidating the Function of OsCFM2 in Rice.	In addition, we analyzed the functions of OsCFM2 and found that this protein influences chloroplast development by regulating the splicing of a group I and five group II introns
OsCFM2	Os04g0464800	LOC_Os04g39060	chloroplast development	Characterization of the CRM Gene Family and Elucidating the Function of OsCFM2 in Rice.	In addition, we analyzed the functions of OsCFM2 and found that this protein influences chloroplast development by regulating the splicing of a group I and five group II introns
OsCG5	Os05g0487100	LOC_Os05g40850	grain	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Collectively, these results show that the natural variation at OsCG5 may contribute towards rice grain quality under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Accessions with lower transcript abundance of OsCG5 exhibit higher chalkiness, which correlates with higher RG values under stress
OsCG5	Os05g0487100	LOC_Os05g40850	stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 These findings are supported by increased chalkiness of OsCG5 knock-out (KO) mutants relative to wildtype (WT) under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Grains from plants overexpressing OsCG5 are less chalky than KOs but comparable to WT under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Collectively, these results show that the natural variation at OsCG5 may contribute towards rice grain quality under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	grain quality	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Collectively, these results show that the natural variation at OsCG5 may contribute towards rice grain quality under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	quality	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Collectively, these results show that the natural variation at OsCG5 may contribute towards rice grain quality under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	chalkiness	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 These findings are supported by increased chalkiness of OsCG5 knock-out (KO) mutants relative to wildtype (WT) under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	ER stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Accessions with lower transcript abundance of OsCG5 exhibit higher chalkiness, which correlates with higher RG values under stress
OsCG5	Os05g0487100	LOC_Os05g40850	heat stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 These findings are supported by increased chalkiness of OsCG5 knock-out (KO) mutants relative to wildtype (WT) under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	heat stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Grains from plants overexpressing OsCG5 are less chalky than KOs but comparable to WT under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	heat stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Collectively, these results show that the natural variation at OsCG5 may contribute towards rice grain quality under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	Heat Stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 These findings are supported by increased chalkiness of OsCG5 knock-out (KO) mutants relative to wildtype (WT) under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	Heat Stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Grains from plants overexpressing OsCG5 are less chalky than KOs but comparable to WT under heat stress
OsCG5	Os05g0487100	LOC_Os05g40850	Heat Stress	Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.	 Collectively, these results show that the natural variation at OsCG5 may contribute towards rice grain quality under heat stress
OsChI1	Os01g0827300	LOC_Os01g61160	root	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In silico analysis of OsChI1 suggests that several genes coexpressed with OsChI1 in the root during various abiotic stresses, such as chilling, drought and salt stress, may play an important role in the ROS signaling pathway
OsChI1	Os01g0827300	LOC_Os01g61160	abiotic stress	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In order to investigate the molecular mechanism underlying chilling tolerance and possible crosstalk with other abiotic stresses, we selected a rice gene, OsChI1 (Os01g61160), for further analysis
OsChI1	Os01g0827300	LOC_Os01g61160	abiotic stress	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In silico analysis of OsChI1 suggests that several genes coexpressed with OsChI1 in the root during various abiotic stresses, such as chilling, drought and salt stress, may play an important role in the ROS signaling pathway
OsChI1	Os01g0827300	LOC_Os01g61160	abiotic stress	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Potential roles of OsChI1 in response to abiotic stresses are discussed
OsChI1	Os01g0827300	LOC_Os01g61160	drought	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.
OsChI1	Os01g0827300	LOC_Os01g61160	drought	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In silico analysis of OsChI1 suggests that several genes coexpressed with OsChI1 in the root during various abiotic stresses, such as chilling, drought and salt stress, may play an important role in the ROS signaling pathway
OsChI1	Os01g0827300	LOC_Os01g61160	salinity	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.
OsChI1	Os01g0827300	LOC_Os01g61160	salinity	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In addition, we also observed increased transcript levels of the OsChI1 gene during dehydration and high salinity conditions
OsChI1	Os01g0827300	LOC_Os01g61160	vegetative	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Higher expression of the OsChI1 gene was also detected in roots and tissues at the vegetative and productive stages
OsChI1	Os01g0827300	LOC_Os01g61160	salt	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In silico analysis of OsChI1 suggests that several genes coexpressed with OsChI1 in the root during various abiotic stresses, such as chilling, drought and salt stress, may play an important role in the ROS signaling pathway
OsChI1	Os01g0827300	LOC_Os01g61160	salt stress	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In silico analysis of OsChI1 suggests that several genes coexpressed with OsChI1 in the root during various abiotic stresses, such as chilling, drought and salt stress, may play an important role in the ROS signaling pathway
OsChI1	Os01g0827300	LOC_Os01g61160	salinity stress	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.
OsChI1	Os01g0827300	LOC_Os01g61160	tolerance	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.
OsChI1	Os01g0827300	LOC_Os01g61160	tolerance	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In order to investigate the molecular mechanism underlying chilling tolerance and possible crosstalk with other abiotic stresses, we selected a rice gene, OsChI1 (Os01g61160), for further analysis
OsChI1	Os01g0827300	LOC_Os01g61160	stress	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.
OsChI1	Os01g0827300	LOC_Os01g61160	chilling	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In order to investigate the molecular mechanism underlying chilling tolerance and possible crosstalk with other abiotic stresses, we selected a rice gene, OsChI1 (Os01g61160), for further analysis
OsChI1	Os01g0827300	LOC_Os01g61160	plasma membrane	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Transient expression of OsChI1 proteins tagged with fluorescence protein in rice protoplasts revealed that OsChI1 is localized in the plasma membrane
OsChI1	Os01g0827300	LOC_Os01g61160	biotic stress	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In order to investigate the molecular mechanism underlying chilling tolerance and possible crosstalk with other abiotic stresses, we selected a rice gene, OsChI1 (Os01g61160), for further analysis
OsChI1	Os01g0827300	LOC_Os01g61160	biotic stress	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	In silico analysis of OsChI1 suggests that several genes coexpressed with OsChI1 in the root during various abiotic stresses, such as chilling, drought and salt stress, may play an important role in the ROS signaling pathway
OsChI1	Os01g0827300	LOC_Os01g61160	biotic stress	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Potential roles of OsChI1 in response to abiotic stresses are discussed
OsChI1	Os01g0827300	LOC_Os01g61160	R protein	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	The OsChI1 gene encodes a putative laccase precursor protein
OsCHI3	Os03g0819600	LOC_Os03g60509	growth	Biochemical and Molecular Characterization of the Rice Chalcone Isomerase Family.	 OsCHI3 and the other OsCHIs were expressed constitutively throughout the rice growth period and different tissues
OsCHI3	Os03g0819600	LOC_Os03g60509	flavonoid	Biochemical and Molecular Characterization of the Rice Chalcone Isomerase Family.	 OsCHI3 expression was induced immediately in response to ultra-violet (UV) stress, suggesting its involvement in the biosynthesis of sakuranetin, a flavonoid phytoalexin in rice
OsChia4a	Os04g0494100	LOC_Os04g41680	jasmonic	Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice	Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice
OsChia4a	Os04g0494100	LOC_Os04g41680	growth	Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice	The recombinant protein of His-tagged OsChia4a exhibited an inhibitory effect against the spore germination and hyphal growth of Magnaporthe oryzae
OsChia4a	Os04g0494100	LOC_Os04g41680	magnaporthe oryzae	Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice	The recombinant protein of His-tagged OsChia4a exhibited an inhibitory effect against the spore germination and hyphal growth of Magnaporthe oryzae
OsChia4a	Os04g0494100	LOC_Os04g41680	jasmonic acid	Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice	Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice
OsChia4a	Os04g0494100	LOC_Os04g41680	transcription factor	Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice	These results imply that a basic helix-loop-helix transcription factor is likely to be involved in the regulation of the OsChia4a expression in a JA-dependent manner
OsCHLH	Os03g0323200	LOC_Os03g20700	growth	Mitochondria provide the main source of cytosolic ATP for activation of outward-rectifying K+ channels in mesophyll protoplast of chlorophyll-deficient mutant rice (OsCHLH) seedlings	The OsCHLH mutant is unable to fix CO2 and exhibits reduced growth
OsCHLH	Os03g0323200	LOC_Os03g20700	chloroplast	Characterization of a rice chlorophyll-deficient mutant using the T-DNA gene-trap system	GUS assays and RNA blot analysis showed that expression of the OsCHLH gene is light inducible, while TEM analysis revealed that the thylakoid membrane of the mutant chloroplasts is underdeveloped
OsCHLH	Os03g0323200	LOC_Os03g20700	seedling	Mitochondria provide the main source of cytosolic ATP for activation of outward-rectifying K+ channels in mesophyll protoplast of chlorophyll-deficient mutant rice (OsCHLH) seedlings	Mitochondria provide the main source of cytosolic ATP for activation of outward-rectifying K+ channels in mesophyll protoplast of chlorophyll-deficient mutant rice (OsCHLH) seedlings
OsCHLH	Os03g0323200	LOC_Os03g20700	mitochondria	Mitochondria provide the main source of cytosolic ATP for activation of outward-rectifying K+ channels in mesophyll protoplast of chlorophyll-deficient mutant rice (OsCHLH) seedlings	We conclude that mesophyll cells in the OsCHLH rice mutant derive ATP from mitochondrial respiration, and that this is critical for the normal function of plasma membrane outward-rectifying K+ channels
OsCHLH	Os03g0323200	LOC_Os03g20700	mitochondria	Mitochondria provide the main source of cytosolic ATP for activation of outward-rectifying K+ channels in mesophyll protoplast of chlorophyll-deficient mutant rice (OsCHLH) seedlings	Mitochondria provide the main source of cytosolic ATP for activation of outward-rectifying K+ channels in mesophyll protoplast of chlorophyll-deficient mutant rice (OsCHLH) seedlings
OsCHR4	None	LOC_Os07g03450	root	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	OsCHR4 was mainly expressed in the root meristem, flower, vascular bundle, and mesophyll cells by promoter::GUS analysis in transgenic rice
OsCHR4	None	LOC_Os07g03450	vascular bundle	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	OsCHR4 was mainly expressed in the root meristem, flower, vascular bundle, and mesophyll cells by promoter::GUS analysis in transgenic rice
OsCHR4	None	LOC_Os07g03450	meristem	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	OsCHR4 was mainly expressed in the root meristem, flower, vascular bundle, and mesophyll cells by promoter::GUS analysis in transgenic rice
OsCHR4	None	LOC_Os07g03450	photosynthesis	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	The transcripts of some nuclear- and plastid-encoded genes required for early chloroplast development and photosynthesis were decreased in the adaxial albino mesophyll of the Oschr4 mutant
OsCHR4	None	LOC_Os07g03450	flower	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	OsCHR4 was mainly expressed in the root meristem, flower, vascular bundle, and mesophyll cells by promoter::GUS analysis in transgenic rice
OsCHR4	None	LOC_Os07g03450	growth	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	Ultrastructural observations indicated that proplastid growth and/or thylakoid membrane formation in adaxial mesophyll cells was blocked in the Oschr4 mutant
OsCHR4	None	LOC_Os07g03450	chloroplast	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	The Oschr4 mutant exhibited defective chloroplasts in adaxial mesophyll, but not in abaxial mesophyll
OsCHR4	None	LOC_Os07g03450	chloroplast	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	The transcripts of some nuclear- and plastid-encoded genes required for early chloroplast development and photosynthesis were decreased in the adaxial albino mesophyll of the Oschr4 mutant
OsCHR4	None	LOC_Os07g03450	chloroplast	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	These observations provide evidence that OsCHR4, the rice Mi-2-like protein, plays an important role in early chloroplast development in adaxial mesophyll cells
OsCHR4	None	LOC_Os07g03450	chloroplast	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll
OsCHR4	None	LOC_Os07g03450	leaf	Mutations in the Rice OsCHR4 Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax.	Therefore, OsCHR4 regulates leaf morphogenesis and cuticle wax formation by epigenetic modulation of auxin and wax biosynthetic genes expression
OsCHR4	None	LOC_Os07g03450	auxin	Mutations in the Rice OsCHR4 Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax.	Therefore, OsCHR4 regulates leaf morphogenesis and cuticle wax formation by epigenetic modulation of auxin and wax biosynthetic genes expression
OsCHR4	None	LOC_Os07g03450	cuticle	Mutations in the Rice OsCHR4 Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax.	Therefore, OsCHR4 regulates leaf morphogenesis and cuticle wax formation by epigenetic modulation of auxin and wax biosynthetic genes expression
OsCHX14	Os05g0276100	LOC_Os05g19500	homeostasis	OsCHX14 is involved in the K+ homeostasis in rice (Oryza sativa) flowers	OsCHX14 is involved in the K+ homeostasis in rice (Oryza sativa) flowers
OsCHX14	Os05g0276100	LOC_Os05g19500	homeostasis	OsCHX14 is involved in the K+ homeostasis in rice (Oryza sativa) flowers	Our data suggest that OsCHX14 may play an important role in K+ homeostasis during flowering in rice
OsCHX14	Os05g0276100	LOC_Os05g19500	ja	OsCHX14 is involved in the K+ homeostasis in rice (Oryza sativa) flowers	Expression profiling confirmed that among 17 CHX genes in rice, OsCHX14 was the only member that showed an expression polymorphism, not only in osjar1 mutants but also in RNAi lines of OsCOI1, another key member of the JA signaling pathway
OsCHX14	Os05g0276100	LOC_Os05g19500	JA	OsCHX14 is involved in the K+ homeostasis in rice (Oryza sativa) flowers	Expression profiling confirmed that among 17 CHX genes in rice, OsCHX14 was the only member that showed an expression polymorphism, not only in osjar1 mutants but also in RNAi lines of OsCOI1, another key member of the JA signaling pathway
OsChz1	Os11g0544600	LOC_Os11g34190	plant development	OsChz1 acts as a histone chaperone in modulating chromatin organization and genome function in rice	Knockout of OsChz1 leads to multiple plant developmental defects
OsCIA	Os10g0159700	LOC_Os10g07210	growth	Low temperature treatment at the young microspore stage induces protein changes in rice anthers	The OsCIA protein was detected in panicles, leaves, and seedling tissues under normal growth conditions
OsCIA	Os10g0159700	LOC_Os10g07210	temperature	Low temperature treatment at the young microspore stage induces protein changes in rice anthers	Quantitative real time RT-PCR analysis of OsCIA mRNA expression showed no significant change between low temperature-treated and untreated plants
OsCIA	Os10g0159700	LOC_Os10g07210	panicle	Low temperature treatment at the young microspore stage induces protein changes in rice anthers	The OsCIA protein was detected in panicles, leaves, and seedling tissues under normal growth conditions
OsCIA	Os10g0159700	LOC_Os10g07210	seedling	Low temperature treatment at the young microspore stage induces protein changes in rice anthers	The OsCIA protein was detected in panicles, leaves, and seedling tissues under normal growth conditions
OsCIA	Os10g0159700	LOC_Os10g07210	anther	Low temperature treatment at the young microspore stage induces protein changes in rice anthers	The newly induced protein named Oryza sativa cold-induced anther protein (OsCIA) was identified as an unknown protein
OsCIN1	Os02g0534400	LOC_Os02g33110	cell wall	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling	During the course of grain filling in the caryopses, OsCIN1 transcript is detectable only in the very early stage of their development, 1~4 d after flowering, when the cell wall invertase activity is the highest and the increase in caryopsis length is rapid
OsCIN1	Os02g0534400	LOC_Os02g33110	cell wall	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling
OsCIN1	Os02g0534400	LOC_Os02g33110	root	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling	OsCIN1 is expressed in roots, in sink- and source-leaves, and in panicles
OsCIN1	Os02g0534400	LOC_Os02g33110	flower	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling	During the course of grain filling in the caryopses, OsCIN1 transcript is detectable only in the very early stage of their development, 1~4 d after flowering, when the cell wall invertase activity is the highest and the increase in caryopsis length is rapid
OsCIN1	Os02g0534400	LOC_Os02g33110	domestication	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication	Results based on analyses of population genetics and gene phylogenetic tree of 25 cultivars and 25 wild rice sequences demonstrated that OsCIN1 was also artificially selected during rice domestication with a fixed mutation in the coding region, in contrast to GIF1 that was selected in the promoter region
OsCIN1	Os02g0534400	LOC_Os02g33110	domestication	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication
OsCIN1	Os02g0534400	LOC_Os02g33110	grain	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling	During the course of grain filling in the caryopses, OsCIN1 transcript is detectable only in the very early stage of their development, 1~4 d after flowering, when the cell wall invertase activity is the highest and the increase in caryopsis length is rapid
OsCIN1	Os02g0534400	LOC_Os02g33110	grain	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling
OsCIN1	Os02g0534400	LOC_Os02g33110	grain filling	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling	During the course of grain filling in the caryopses, OsCIN1 transcript is detectable only in the very early stage of their development, 1~4 d after flowering, when the cell wall invertase activity is the highest and the increase in caryopsis length is rapid
OsCIN1	Os02g0534400	LOC_Os02g33110	grain filling	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling
OsCIN1	Os02g0534400	LOC_Os02g33110	panicle	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling	OsCIN1 is expressed in roots, in sink- and source-leaves, and in panicles
OsCIPK12	Os01g0759400	LOC_Os01g55450	drought	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Transgenic plants overexpressing the transgenes OsCIPK03, OsCIPK12, and OsCIPK15 showed significantly improved tolerance to cold, drought, and salt stress, respectively
OsCIPK12	Os01g0759400	LOC_Os01g55450	drought	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Under cold and drought stresses, OsCIPK03- and OsCIPK12-overexpressing transgenic plants accumulated significantly higher contents of proline and soluble sugars than the wild type
OsCIPK12	Os01g0759400	LOC_Os01g55450	salt stress	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Transgenic plants overexpressing the transgenes OsCIPK03, OsCIPK12, and OsCIPK15 showed significantly improved tolerance to cold, drought, and salt stress, respectively
OsCIPK12	Os01g0759400	LOC_Os01g55450	salt	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Transgenic plants overexpressing the transgenes OsCIPK03, OsCIPK12, and OsCIPK15 showed significantly improved tolerance to cold, drought, and salt stress, respectively
OsCIPK14	Os12g0113500	LOC_Os12g02200	mitochondria	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	OsCIPK14/15-RNAi transgenic cell lines showed reduced sensitivity to TvX/EIX for the induction of a wide range of defense responses, including hypersensitive cell death, mitochondrial dysfunction, phytoalexin biosynthesis, and pathogenesis-related gene expression
OsCIPK14	Os12g0113500	LOC_Os12g02200	ethylene	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	We here identified two CIPKs, OsCIPK14 and OsCIPK15, rapidly induced by microbe-associated molecular patterns, including chitooligosaccharides and xylanase (Trichoderma viride/ethylene-inducing xylanase [TvX/EIX]), in rice (Oryza sativa)
OsCIPK14	Os12g0113500	LOC_Os12g02200	defense	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	OsCIPK14/15-RNAi transgenic cell lines showed reduced sensitivity to TvX/EIX for the induction of a wide range of defense responses, including hypersensitive cell death, mitochondrial dysfunction, phytoalexin biosynthesis, and pathogenesis-related gene expression
OsCIPK14	Os12g0113500	LOC_Os12g02200	defense	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	Our results suggest that OsCIPK14/15 play a crucial role in the microbe-associated molecular pattern-induced defense signaling pathway in rice cultured cells
OsCIPK14	Os12g0113500	LOC_Os12g02200	defense	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells
OsCIPK14	Os12g0113500	LOC_Os12g02200	cell death	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	OsCIPK14/15-RNAi transgenic cell lines showed reduced sensitivity to TvX/EIX for the induction of a wide range of defense responses, including hypersensitive cell death, mitochondrial dysfunction, phytoalexin biosynthesis, and pathogenesis-related gene expression
OsCIPK14	Os12g0113500	LOC_Os12g02200	cell death	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells
OsCIPK14	Os12g0113500	LOC_Os12g02200	defense response	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	OsCIPK14/15-RNAi transgenic cell lines showed reduced sensitivity to TvX/EIX for the induction of a wide range of defense responses, including hypersensitive cell death, mitochondrial dysfunction, phytoalexin biosynthesis, and pathogenesis-related gene expression
OsCIPK15	Os11g0113700	LOC_Os11g02240	cell death	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	On the other hand, TvX/EIX-induced cell death was enhanced in OsCIPK15-overexpressing lines
OsCIPK15	Os11g0113700	LOC_Os11g02240	ethylene	Regulation of Microbe-Associated Molecular Pattern-Induced Hypersensitive Cell Death, Phytoalexin Production, and Defense Gene Expression by Calcineurin B-Like Protein-Interacting Protein Kinases, OsCIPK14/15, in Rice Cultured Cells	We here identified two CIPKs, OsCIPK14 and OsCIPK15, rapidly induced by microbe-associated molecular patterns, including chitooligosaccharides and xylanase (Trichoderma viride/ethylene-inducing xylanase [TvX/EIX]), in rice (Oryza sativa)
OsCIPK15	Os11g0113700	LOC_Os11g02240	drought	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Transgenic plants overexpressing the transgenes OsCIPK03, OsCIPK12, and OsCIPK15 showed significantly improved tolerance to cold, drought, and salt stress, respectively
OsCIPK15	Os11g0113700	LOC_Os11g02240	salt stress	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Transgenic plants overexpressing the transgenes OsCIPK03, OsCIPK12, and OsCIPK15 showed significantly improved tolerance to cold, drought, and salt stress, respectively
OsCIPK15	Os11g0113700	LOC_Os11g02240	salt	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Transgenic plants overexpressing the transgenes OsCIPK03, OsCIPK12, and OsCIPK15 showed significantly improved tolerance to cold, drought, and salt stress, respectively
OsCIPK17	Os05g0136200	LOC_Os05g04550	grain	Functional Analysis of OsCIPK17 in Rice Grain Filling.	Functional Analysis of OsCIPK17 in Rice Grain Filling.
OsCIPK17	Os05g0136200	LOC_Os05g04550	grain	Functional Analysis of OsCIPK17 in Rice Grain Filling.	 The results showed that knockout of OsCIPK17 affected photosynthesis and starch-, sucrose-, and amino acid metabolism-related gene expression; furthermore, the mutation reduced PSII utilization efficiency, it blocked the synthesis and metabolism of starch and sucrose, and affected the formation and transport of assimilates, thereby reducing final grain weight
OsCIPK17	Os05g0136200	LOC_Os05g04550	starch	Functional Analysis of OsCIPK17 in Rice Grain Filling.	 The results showed that knockout of OsCIPK17 affected photosynthesis and starch-, sucrose-, and amino acid metabolism-related gene expression; furthermore, the mutation reduced PSII utilization efficiency, it blocked the synthesis and metabolism of starch and sucrose, and affected the formation and transport of assimilates, thereby reducing final grain weight
OsCIPK17	Os05g0136200	LOC_Os05g04550	photosynthesis	Functional Analysis of OsCIPK17 in Rice Grain Filling.	 The results showed that knockout of OsCIPK17 affected photosynthesis and starch-, sucrose-, and amino acid metabolism-related gene expression; furthermore, the mutation reduced PSII utilization efficiency, it blocked the synthesis and metabolism of starch and sucrose, and affected the formation and transport of assimilates, thereby reducing final grain weight
OsCIPK17	Os05g0136200	LOC_Os05g04550	grain filling	Functional Analysis of OsCIPK17 in Rice Grain Filling.	Functional Analysis of OsCIPK17 in Rice Grain Filling.
OsCIPK17	Os05g0136200	LOC_Os05g04550	grain weight	Functional Analysis of OsCIPK17 in Rice Grain Filling.	 The results showed that knockout of OsCIPK17 affected photosynthesis and starch-, sucrose-, and amino acid metabolism-related gene expression; furthermore, the mutation reduced PSII utilization efficiency, it blocked the synthesis and metabolism of starch and sucrose, and affected the formation and transport of assimilates, thereby reducing final grain weight
OsCIPK18	Os05g0332300	LOC_Os05g26820	transcription factor	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	 We further identified a transcriptional regulatory network downstream of OsCIPK18 under NH4+ stress that is centered on several core transcription factors
OsCIPK18	Os05g0332300	LOC_Os05g26820	Kinase	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.
OsCIPK18	Os05g0332300	LOC_Os05g26820	kinase	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.
OsCIPK18	Os05g0332300	LOC_Os05g26820	auxin	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	 Moreover, OsCIPK18 might function as a transmitter in the auxin and abscisic acid (ABA) signaling pathways affected by excess ammonium
OsCIPK18	Os05g0332300	LOC_Os05g26820	stress	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	 We further identified a transcriptional regulatory network downstream of OsCIPK18 under NH4+ stress that is centered on several core transcription factors
OsCIPK18	Os05g0332300	LOC_Os05g26820	cell wall	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	 Differentially expressed genes induced by excess NH4+ in WT and cipk18 were associated with functions, such as ion transport, metabolism, cell wall formation, and phytohormones signaling, suggesting a fundamental role for OsCIPK18 in ammonium toxicity
OsCIPK18	Os05g0332300	LOC_Os05g26820	abscisic acid	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	 Moreover, OsCIPK18 might function as a transmitter in the auxin and abscisic acid (ABA) signaling pathways affected by excess ammonium
OsCIPK18	Os05g0332300	LOC_Os05g26820	protein kinase	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.
OsCIPK18	Os05g0332300	LOC_Os05g26820	transcriptional regulator	CBL-Interacting Protein Kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	 We further identified a transcriptional regulatory network downstream of OsCIPK18 under NH4+ stress that is centered on several core transcription factors
OsCIPK2	Os07g0678600	LOC_Os07g48100	nitrogen	Exploring the Potential of Overexpressed OsCIPK2 Rice as a Nitrogen Utilization Efficient Crop and Analysis of Its Associated Rhizo-Compartmental Microbial Communities.	Exploring the Potential of Overexpressed OsCIPK2 Rice as a Nitrogen Utilization Efficient Crop and Analysis of Its Associated Rhizo-Compartmental Microbial Communities.
OsCIPK23	Os07g0150700	LOC_Os07g05620	drought tolerance	Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.)	In consistent, overexpression of OsCIPK23 induced the expression of several drought tolerance related genes
OsCIPK23	Os07g0150700	LOC_Os07g05620	seed	Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.)	RNA interference-mediated suppression of OsCIPK23 expression significantly reduced seed set and conferred a hypersensitive response to drought stress, indicating its possible roles in pollination and drought stress
OsCIPK23	Os07g0150700	LOC_Os07g05620	drought	Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.)	RNA interference-mediated suppression of OsCIPK23 expression significantly reduced seed set and conferred a hypersensitive response to drought stress, indicating its possible roles in pollination and drought stress
OsCIPK23	Os07g0150700	LOC_Os07g05620	drought	Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.)	In consistent, overexpression of OsCIPK23 induced the expression of several drought tolerance related genes
OsCIPK23	Os07g0150700	LOC_Os07g05620	drought	Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.)	Taken together, these results indicate that OsCIPK23 is a multistress induced gene and likely mediates a signaling pathway commonly shared by both pollination and drought stress responses in rice
OsCIPK23	Os07g0150700	LOC_Os07g05620	drought	Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.)	Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.)
OsCIPK23	Os07g0150700	LOC_Os07g05620	potassium uptake	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex	Disruption of Os-AKT1 significantly reduced the K+ content, which resulted in inhibition of plant growth and development.
OsCIPK23	Os07g0150700	LOC_Os07g05620	root	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex	Disruption of Os-AKT1 significantly reduced the K+ content, which resulted in inhibition of plant growth and development.
OsCIPK23	Os07g0150700	LOC_Os07g05620	potassium	Calcium lignosulfonate improves proliferation of recalcitrant indica rice callus via modulation of auxin biosynthesis and enhancement of nutrient absorption	Consistently, increased of potassium protein kinases genes (OsAKT1, OsHAK5, OsCBL, OsCIPK23 and OsCamk1) were also recorded
OsCIPK23	Os07g0150700	LOC_Os07g05620	protein kinase	Calcium lignosulfonate improves proliferation of recalcitrant indica rice callus via modulation of auxin biosynthesis and enhancement of nutrient absorption	Consistently, increased of potassium protein kinases genes (OsAKT1, OsHAK5, OsCBL, OsCIPK23 and OsCamk1) were also recorded
OsCIPK23	Os07g0150700	LOC_Os07g05620	nitrogen	Heterotrimeric G-protein subunit (RGA1) regulates tiller development, yield, cell wall, nitrogen response and biotic stress in rice	Transcription factor network analysis revealed the importance of RGA1 in nitrogen signaling with DEGs such as Nin-like, WRKY, NAC, bHLH families, nitrite reductase, glutamine synthetase, OsCIPK23 and urea transporter
OsCIPK23	Os07g0150700	LOC_Os07g05620	transcription factor	Heterotrimeric G-protein subunit (RGA1) regulates tiller development, yield, cell wall, nitrogen response and biotic stress in rice	Transcription factor network analysis revealed the importance of RGA1 in nitrogen signaling with DEGs such as Nin-like, WRKY, NAC, bHLH families, nitrite reductase, glutamine synthetase, OsCIPK23 and urea transporter
OsCIPK23	Os07g0150700	LOC_Os07g05620	transporter	Heterotrimeric G-protein subunit (RGA1) regulates tiller development, yield, cell wall, nitrogen response and biotic stress in rice	Transcription factor network analysis revealed the importance of RGA1 in nitrogen signaling with DEGs such as Nin-like, WRKY, NAC, bHLH families, nitrite reductase, glutamine synthetase, OsCIPK23 and urea transporter
OsCIPK30	Os01g0759200	LOC_Os01g55440	tolerance	Overexpression of OsCIPK30 Enhances Plant Tolerance to Rice stripe virus.	Overexpression of OsCIPK30 Enhances Plant Tolerance to Rice stripe virus.
OsCIPK30	Os01g0759200	LOC_Os01g55440	tolerance	Overexpression of OsCIPK30 Enhances Plant Tolerance to Rice stripe virus.	These results suggest that overexpression of OsCIPK30 positively regulates pathogenesis-related genes to enhance the tolerance to RSV in rice
OsCIPK30	Os01g0759200	LOC_Os01g55440	RSV	Overexpression of OsCIPK30 Enhances Plant Tolerance to Rice stripe virus.	Our investigation showed that overexpression of OsCIPK30 in rice could delay the RSV symptoms and show milder RSV symptoms
OsCIPK30	Os01g0759200	LOC_Os01g55440	RSV	Overexpression of OsCIPK30 Enhances Plant Tolerance to Rice stripe virus.	These results suggest that overexpression of OsCIPK30 positively regulates pathogenesis-related genes to enhance the tolerance to RSV in rice
OsCIPK30	Os01g0759200	LOC_Os01g55440	rice stripe virus	Overexpression of OsCIPK30 Enhances Plant Tolerance to Rice stripe virus.	Overexpression of OsCIPK30 Enhances Plant Tolerance to Rice stripe virus.
OsCIPK7	Os03g0634400	LOC_Os03g43440	temperature	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.
OsCIPK7	Os03g0634400	LOC_Os03g43440	plasma membrane	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Moreover, Calcineurin B-like protein 7 (OsCBL7) and OsCBL8 interact with OsCIPK7 specifically on the plasma membrane
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	seed	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	To determine the physiological roles of OsCIPK31 in rice plants, the sensitivity of oscipk31::Ds, which is a transposon Ds insertion mutant, to abiotic stresses was examined during germination and seedling stages
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	seed	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	In addition, oscipk31::Ds seedlings exhibited enhanced expression of several stress-responsive genes after exposure to these abiotic stresses
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	seed	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	This study demonstrated that rice plants use OsCIPK31 to modulate responses to abiotic stresses during the seed germination and seedling stages and to modulate the expression of stress-responsive genes
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	seed	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	salt stress	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Transgenic plants overexpressing the transgenes OsCIPK03, OsCIPK12, and OsCIPK15 showed significantly improved tolerance to cold, drought, and salt stress, respectively
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	salt	Isolation and characterization of a novel rice Ca2+-regulated protein kinase gene involved in responses to diverse signals including cold, light, cytokinins, sugars and salts	Sequence analysis indicated that the open reading frame of the OsCK1 gene consists of 1350 bp encoding 449 amino acid residues, which is very similar to a family of calcineurin B-like protein (CBL)-interacting protein kinases (CIPKs) or salt overly sensitive 2 (SOS2)-like protein kinases (PKS) in Arabidopsis
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	salt	Isolation and characterization of a novel rice Ca2+-regulated protein kinase gene involved in responses to diverse signals including cold, light, cytokinins, sugars and salts	Expression of the OsCK1 gene was detected mainly in the shoots and highly inducible by diverse signals such as cold, light, salt, sugar and cytokinins
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	drought	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Transgenic plants overexpressing the transgenes OsCIPK03, OsCIPK12, and OsCIPK15 showed significantly improved tolerance to cold, drought, and salt stress, respectively
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	drought	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Under cold and drought stresses, OsCIPK03- and OsCIPK12-overexpressing transgenic plants accumulated significantly higher contents of proline and soluble sugars than the wild type
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	cytokinin	Isolation and characterization of a novel rice Ca2+-regulated protein kinase gene involved in responses to diverse signals including cold, light, cytokinins, sugars and salts	Expression of the OsCK1 gene was detected mainly in the shoots and highly inducible by diverse signals such as cold, light, salt, sugar and cytokinins
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	shoot	Isolation and characterization of a novel rice Ca2+-regulated protein kinase gene involved in responses to diverse signals including cold, light, cytokinins, sugars and salts	Expression of the OsCK1 gene was detected mainly in the shoots and highly inducible by diverse signals such as cold, light, salt, sugar and cytokinins
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	growth	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	salt	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	oscipk31::Ds mutants exhibited hypersensitive phenotypes to ABA, salt, mannitol, and glucose
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	seedling	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	To determine the physiological roles of OsCIPK31 in rice plants, the sensitivity of oscipk31::Ds, which is a transposon Ds insertion mutant, to abiotic stresses was examined during germination and seedling stages
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	seedling	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	In addition, oscipk31::Ds seedlings exhibited enhanced expression of several stress-responsive genes after exposure to these abiotic stresses
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	seedling	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	This study demonstrated that rice plants use OsCIPK31 to modulate responses to abiotic stresses during the seed germination and seedling stages and to modulate the expression of stress-responsive genes
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	seedling	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	salt	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement	Transgenic plants overexpressing the transgenes OsCIPK03, OsCIPK12, and OsCIPK15 showed significantly improved tolerance to cold, drought, and salt stress, respectively
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	seed germination	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	This study demonstrated that rice plants use OsCIPK31 to modulate responses to abiotic stresses during the seed germination and seedling stages and to modulate the expression of stress-responsive genes
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	ABA	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	However, the expression of ABA metabolic genes and the endogenous levels of ABA were not altered significantly in the oscipk31::Ds mutant
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	abiotic stress	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	To determine the physiological roles of OsCIPK31 in rice plants, the sensitivity of oscipk31::Ds, which is a transposon Ds insertion mutant, to abiotic stresses was examined during germination and seedling stages
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	abiotic stress	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	In addition, oscipk31::Ds seedlings exhibited enhanced expression of several stress-responsive genes after exposure to these abiotic stresses
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	abiotic stress	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	This study demonstrated that rice plants use OsCIPK31 to modulate responses to abiotic stresses during the seed germination and seedling stages and to modulate the expression of stress-responsive genes
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	abiotic stress	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants	OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	panicle	Rice Calcineurin B-Like Protein-Interacting Protein Kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets.	Our results support that OsCIPK31 plays an important role in panicle development
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	panicle	Rice Calcineurin B-Like Protein-Interacting Protein Kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets.	We found that dysregulation is caused by the disruption of OsCIPK31 function due to excessive accumulation of ROS, which ultimately leads to cell death in rice panicle
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	panicle	Rice Calcineurin B-Like Protein-Interacting Protein Kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets.	Our study provides an understanding of the role of OsCIPK31 in panicle development by responding to various stresses and phytohormones
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	development	Rice Calcineurin B-Like Protein-Interacting Protein Kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets.	Our results support that OsCIPK31 plays an important role in panicle development
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	development	Rice Calcineurin B-Like Protein-Interacting Protein Kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets.	Our study provides an understanding of the role of OsCIPK31 in panicle development by responding to various stresses and phytohormones
OsCK1|OsCIPK31|CIPK03	Os03g0319400	LOC_Os03g20380	cell death	Rice Calcineurin B-Like Protein-Interacting Protein Kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets.	We found that dysregulation is caused by the disruption of OsCIPK31 function due to excessive accumulation of ROS, which ultimately leads to cell death in rice panicle
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	shoot	Functional identification of OsHk6 as a homotypic cytokinin receptor in rice with preferential affinity for iP	Ectopic expression of OsHk6 in rice calli promoted green pigmentation and subsequent shoot induction, further supporting an OsHk6 in planta function as a cytokinin receptor
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	grain	Functional identification of OsHk6 as a homotypic cytokinin receptor in rice with preferential affinity for iP	OsHk4 and OsHk6 were highly expressed in spikelets, suggesting that tZ and iP might play key roles in grain development
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	cytokinin	Functional identification of OsHk6 as a homotypic cytokinin receptor in rice with preferential affinity for iP	OsHk6 was highly sensitive to isopentenyladenine (iP) and was capable of restoring cytokinin-dependent ARR6 reporter expression in the ahk2 ahk3 Arabidopsis mutant upon treatment with 1 nM iP
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	cytokinin	Functional identification of OsHk6 as a homotypic cytokinin receptor in rice with preferential affinity for iP	Ectopic expression of OsHk6 in rice calli promoted green pigmentation and subsequent shoot induction, further supporting an OsHk6 in planta function as a cytokinin receptor
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	cytokinin	Functional identification of OsHk6 as a homotypic cytokinin receptor in rice with preferential affinity for iP	Functional identification of OsHk6 as a homotypic cytokinin receptor in rice with preferential affinity for iP
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	spikelet	Functional identification of OsHk6 as a homotypic cytokinin receptor in rice with preferential affinity for iP	OsHk4 and OsHk6 were highly expressed in spikelets, suggesting that tZ and iP might play key roles in grain development
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	root	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	Our results demonstrate that OsCKT1 plays important roles in cytokinin perception and control of root development in rice
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	development	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	Our results demonstrate that OsCKT1 plays important roles in cytokinin perception and control of root development in rice
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	starch	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	In addition, whole-genome gene expression profiling analysis showed that OsCKT1 was involved in cytokinin regulation of a number of biological processes, including secondary metabolism, sucrose and starch metabolism, chlorophyll synthesis, and photosynthesis
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	photosynthesis	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	In addition, whole-genome gene expression profiling analysis showed that OsCKT1 was involved in cytokinin regulation of a number of biological processes, including secondary metabolism, sucrose and starch metabolism, chlorophyll synthesis, and photosynthesis
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	root development	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	Our results demonstrate that OsCKT1 plays important roles in cytokinin perception and control of root development in rice
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	cytokinin	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	cytokinin	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	In addition, whole-genome gene expression profiling analysis showed that OsCKT1 was involved in cytokinin regulation of a number of biological processes, including secondary metabolism, sucrose and starch metabolism, chlorophyll synthesis, and photosynthesis
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	cytokinin	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	Our results demonstrate that OsCKT1 plays important roles in cytokinin perception and control of root development in rice
OsCKT1|OHK5|OsHk6	Os02g0738400	LOC_Os02g50480	sucrose	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	In addition, whole-genome gene expression profiling analysis showed that OsCKT1 was involved in cytokinin regulation of a number of biological processes, including secondary metabolism, sucrose and starch metabolism, chlorophyll synthesis, and photosynthesis
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	) cytokinin oxidase/dehydrogenase OsCKX11 in delaying leaf senescence, increasing grain number, and coordinately regulating source and sink
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	OsCKX11 was predominantly expressed in the roots, leaves, and panicles and was strongly induced by abscisic acid and leaf senescence
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Thus, OsCKX11 functions antagonistically between cytokinins and ABA in leaf senescence
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Collectively, our findings reveal that OsCKX11 simultaneously regulates photosynthesis and grain number, which may provide new insights into leaf senescence and crop molecular breeding
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf senescence	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf senescence	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	) cytokinin oxidase/dehydrogenase OsCKX11 in delaying leaf senescence, increasing grain number, and coordinately regulating source and sink
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf senescence	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	OsCKX11 was predominantly expressed in the roots, leaves, and panicles and was strongly induced by abscisic acid and leaf senescence
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf senescence	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Thus, OsCKX11 functions antagonistically between cytokinins and ABA in leaf senescence
OsCKX11	Os08g0460600	LOC_Os08g35860	leaf senescence	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Collectively, our findings reveal that OsCKX11 simultaneously regulates photosynthesis and grain number, which may provide new insights into leaf senescence and crop molecular breeding
OsCKX11	Os08g0460600	LOC_Os08g35860	senescence	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number
OsCKX11	Os08g0460600	LOC_Os08g35860	senescence	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	OsCKX11 was predominantly expressed in the roots, leaves, and panicles and was strongly induced by abscisic acid and leaf senescence
OsCKX11	Os08g0460600	LOC_Os08g35860	senescence	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Thus, OsCKX11 functions antagonistically between cytokinins and ABA in leaf senescence
OsCKX11	Os08g0460600	LOC_Os08g35860	senescence	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Collectively, our findings reveal that OsCKX11 simultaneously regulates photosynthesis and grain number, which may provide new insights into leaf senescence and crop molecular breeding
OsCKX11	Os08g0460600	LOC_Os08g35860	grain	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number
OsCKX11	Os08g0460600	LOC_Os08g35860	grain	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	) cytokinin oxidase/dehydrogenase OsCKX11 in delaying leaf senescence, increasing grain number, and coordinately regulating source and sink
OsCKX11	Os08g0460600	LOC_Os08g35860	grain	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Moreover, osckx11 presented with significantly increased branch, tiller, and grain number compared with the WT
OsCKX11	Os08g0460600	LOC_Os08g35860	grain	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Collectively, our findings reveal that OsCKX11 simultaneously regulates photosynthesis and grain number, which may provide new insights into leaf senescence and crop molecular breeding
OsCKX11	Os08g0460600	LOC_Os08g35860	grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number
OsCKX11	Os08g0460600	LOC_Os08g35860	grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	) cytokinin oxidase/dehydrogenase OsCKX11 in delaying leaf senescence, increasing grain number, and coordinately regulating source and sink
OsCKX11	Os08g0460600	LOC_Os08g35860	grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Moreover, osckx11 presented with significantly increased branch, tiller, and grain number compared with the WT
OsCKX11	Os08g0460600	LOC_Os08g35860	grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Collectively, our findings reveal that OsCKX11 simultaneously regulates photosynthesis and grain number, which may provide new insights into leaf senescence and crop molecular breeding
OsCKX11	Os08g0460600	LOC_Os08g35860	photosynthesis	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Collectively, our findings reveal that OsCKX11 simultaneously regulates photosynthesis and grain number, which may provide new insights into leaf senescence and crop molecular breeding
OsCKX11	Os08g0460600	LOC_Os08g35860	ABA	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	In the osckx11 mutant, the ABA-biosynthesizing genes were down-regulated and the ABA-degrading genes were up-regulated, thereby reducing the ABA levels relative to the WT
OsCKX11	Os08g0460600	LOC_Os08g35860	ABA	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Thus, OsCKX11 functions antagonistically between cytokinins and ABA in leaf senescence
OsCKX11	Os08g0460600	LOC_Os08g35860	cytokinin	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number
OsCKX11	Os08g0460600	LOC_Os08g35860	cytokinin	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	) cytokinin oxidase/dehydrogenase OsCKX11 in delaying leaf senescence, increasing grain number, and coordinately regulating source and sink
OsCKX11	Os08g0460600	LOC_Os08g35860	cytokinin	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Cytokinin levels were significantly increased in the flag leaves of osckx11 mutant compared to those of the wild type (WT)
OsCKX11	Os08g0460600	LOC_Os08g35860	breeding	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Collectively, our findings reveal that OsCKX11 simultaneously regulates photosynthesis and grain number, which may provide new insights into leaf senescence and crop molecular breeding
OsCKX11	Os08g0460600	LOC_Os08g35860	abscisic acid	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	OsCKX11 was predominantly expressed in the roots, leaves, and panicles and was strongly induced by abscisic acid and leaf senescence
OsCKX11	Os08g0460600	LOC_Os08g35860	ABA	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	In the osckx11 mutant, the ABA-biosynthesizing genes were down-regulated and the ABA-degrading genes were up-regulated, thereby reducing the ABA levels relative to the WT
OsCKX11	Os08g0460600	LOC_Os08g35860	ABA	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number	Thus, OsCKX11 functions antagonistically between cytokinins and ABA in leaf senescence
OsCKX3	Os10g0483500	LOC_Os10g34230	leaf	Cytokinins regulate rice lamina joint development and leaf angle.	 Phenotypic analysis showed that rice osckx3 mutants had smaller leaf angles, while the overexpression lines (OsCKX3-OE) had larger leaf angles
OsCKX3	Os10g0483500	LOC_Os10g34230	leaf	Cytokinins regulate rice lamina joint development and leaf angle.	 Histological sections indicated that the leaf inclination changes in the osckx3 and OsCKX3-OE lines resulted from asymmetric proliferation of the cells and vascular bundles in the lamina joint
OsCKX3	Os10g0483500	LOC_Os10g34230	leaf	Cytokinins regulate rice lamina joint development and leaf angle.	 Interestingly, agronomic trait analysis of the rice grown in the paddy field indicated that osckx3 displayed a smaller leaf angle and enhanced primary branch number, grain size, 1,000-grain weight, and flag leaf size
OsCKX3	Os10g0483500	LOC_Os10g34230	leaf	Cytokinins regulate rice lamina joint development and leaf angle.	 Collectively, our results revealed that enhancing CK levels in the lamina joint by disrupting OsCKX3 negatively regulates leaf angle, highlighting that the CK pathway can be engineered to reduce leaf angle in rice and possibly in other cereals
OsCKX3	Os10g0483500	LOC_Os10g34230	vascular bundle	Cytokinins regulate rice lamina joint development and leaf angle.	 Histological sections indicated that the leaf inclination changes in the osckx3 and OsCKX3-OE lines resulted from asymmetric proliferation of the cells and vascular bundles in the lamina joint
OsCKX3	Os10g0483500	LOC_Os10g34230	grain	Cytokinins regulate rice lamina joint development and leaf angle.	 Interestingly, agronomic trait analysis of the rice grown in the paddy field indicated that osckx3 displayed a smaller leaf angle and enhanced primary branch number, grain size, 1,000-grain weight, and flag leaf size
OsCKX3	Os10g0483500	LOC_Os10g34230	grain size	Cytokinins regulate rice lamina joint development and leaf angle.	 Interestingly, agronomic trait analysis of the rice grown in the paddy field indicated that osckx3 displayed a smaller leaf angle and enhanced primary branch number, grain size, 1,000-grain weight, and flag leaf size
OsCKX3	Os10g0483500	LOC_Os10g34230	lamina	Cytokinins regulate rice lamina joint development and leaf angle.	 Histological sections indicated that the leaf inclination changes in the osckx3 and OsCKX3-OE lines resulted from asymmetric proliferation of the cells and vascular bundles in the lamina joint
OsCKX3	Os10g0483500	LOC_Os10g34230	lamina	Cytokinins regulate rice lamina joint development and leaf angle.	 Reverse transcription quantitative PCR, promoter-fused β-glucuronidase expression, and subcellular localization assays indicated that OsCKX3 was highly expressed in the lamina joint, and OsCKX3-GFP fusion protein localized to the endoplasmic reticulum
OsCKX3	Os10g0483500	LOC_Os10g34230	lamina	Cytokinins regulate rice lamina joint development and leaf angle.	 Collectively, our results revealed that enhancing CK levels in the lamina joint by disrupting OsCKX3 negatively regulates leaf angle, highlighting that the CK pathway can be engineered to reduce leaf angle in rice and possibly in other cereals
OsCKX3	Os10g0483500	LOC_Os10g34230	grain weight	Cytokinins regulate rice lamina joint development and leaf angle.	 Interestingly, agronomic trait analysis of the rice grown in the paddy field indicated that osckx3 displayed a smaller leaf angle and enhanced primary branch number, grain size, 1,000-grain weight, and flag leaf size
OsCKX3	Os10g0483500	LOC_Os10g34230	leaf angle	Cytokinins regulate rice lamina joint development and leaf angle.	 Phenotypic analysis showed that rice osckx3 mutants had smaller leaf angles, while the overexpression lines (OsCKX3-OE) had larger leaf angles
OsCKX3	Os10g0483500	LOC_Os10g34230	leaf angle	Cytokinins regulate rice lamina joint development and leaf angle.	 Interestingly, agronomic trait analysis of the rice grown in the paddy field indicated that osckx3 displayed a smaller leaf angle and enhanced primary branch number, grain size, 1,000-grain weight, and flag leaf size
OsCKX3	Os10g0483500	LOC_Os10g34230	leaf angle	Cytokinins regulate rice lamina joint development and leaf angle.	 Collectively, our results revealed that enhancing CK levels in the lamina joint by disrupting OsCKX3 negatively regulates leaf angle, highlighting that the CK pathway can be engineered to reduce leaf angle in rice and possibly in other cereals
OsCKX3	Os10g0483500	LOC_Os10g34230	lamina joint	Cytokinins regulate rice lamina joint development and leaf angle.	 Histological sections indicated that the leaf inclination changes in the osckx3 and OsCKX3-OE lines resulted from asymmetric proliferation of the cells and vascular bundles in the lamina joint
OsCKX3	Os10g0483500	LOC_Os10g34230	lamina joint	Cytokinins regulate rice lamina joint development and leaf angle.	 Reverse transcription quantitative PCR, promoter-fused β-glucuronidase expression, and subcellular localization assays indicated that OsCKX3 was highly expressed in the lamina joint, and OsCKX3-GFP fusion protein localized to the endoplasmic reticulum
OsCKX3	Os10g0483500	LOC_Os10g34230	lamina joint	Cytokinins regulate rice lamina joint development and leaf angle.	 Collectively, our results revealed that enhancing CK levels in the lamina joint by disrupting OsCKX3 negatively regulates leaf angle, highlighting that the CK pathway can be engineered to reduce leaf angle in rice and possibly in other cereals
OsCKX3	Os10g0483500	LOC_Os10g34230	leaf size	Cytokinins regulate rice lamina joint development and leaf angle.	 Interestingly, agronomic trait analysis of the rice grown in the paddy field indicated that osckx3 displayed a smaller leaf angle and enhanced primary branch number, grain size, 1,000-grain weight, and flag leaf size
OsCKX4	Os01g0940000	LOC_Os01g71310	leaf	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	OsCKX4 is predominantly expressed in leaf blades and roots
OsCKX4	Os01g0940000	LOC_Os01g71310	root	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Overexpression and RNA interference of OsCKX4 confirmed that OsCKX4 plays a positive role in crown root formation
OsCKX4	Os01g0940000	LOC_Os01g71310	root	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Moreover, expression analysis revealed a significant alteration in the expression of auxin-related genes in the ren1-D mutants, indicating that the OsCKX4 mediates crown root development by integrating the interaction between cytokinin and auxin
OsCKX4	Os01g0940000	LOC_Os01g71310	root	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Transgenic plants harboring OsCKX4 under the control of the root-specific promoter RCc3 displayed enhanced root development without affecting their shoot parts, suggesting that this strategy could be a powerful tool in rice root engineering
OsCKX4	Os01g0940000	LOC_Os01g71310	shoot	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Transgenic plants harboring OsCKX4 under the control of the root-specific promoter RCc3 displayed enhanced root development without affecting their shoot parts, suggesting that this strategy could be a powerful tool in rice root engineering
OsCKX4	Os01g0940000	LOC_Os01g71310	development	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Moreover, expression analysis revealed a significant alteration in the expression of auxin-related genes in the ren1-D mutants, indicating that the OsCKX4 mediates crown root development by integrating the interaction between cytokinin and auxin
OsCKX4	Os01g0940000	LOC_Os01g71310	development	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Transgenic plants harboring OsCKX4 under the control of the root-specific promoter RCc3 displayed enhanced root development without affecting their shoot parts, suggesting that this strategy could be a powerful tool in rice root engineering
OsCKX4	Os01g0940000	LOC_Os01g71310	auxin	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	OsCKX4 is induced by exogenous auxin and cytokinin in the roots
OsCKX4	Os01g0940000	LOC_Os01g71310	auxin	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Furthermore, one-hybrid assays revealed that OsCKX4 is a direct binding target of both the auxin response factor OsARF25 and the cytokinin response regulators OsRR2 and OsRR3
OsCKX4	Os01g0940000	LOC_Os01g71310	auxin	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Moreover, expression analysis revealed a significant alteration in the expression of auxin-related genes in the ren1-D mutants, indicating that the OsCKX4 mediates crown root development by integrating the interaction between cytokinin and auxin
OsCKX4	Os01g0940000	LOC_Os01g71310	cytokinin	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Molecular and genetic analyses revealed that these phenotypes are caused by the activation of a cytokinin oxidase/dehydrogenase (CKX) family gene, OsCKX4
OsCKX4	Os01g0940000	LOC_Os01g71310	cytokinin	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	OsCKX4 is induced by exogenous auxin and cytokinin in the roots
OsCKX4	Os01g0940000	LOC_Os01g71310	cytokinin	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Furthermore, one-hybrid assays revealed that OsCKX4 is a direct binding target of both the auxin response factor OsARF25 and the cytokinin response regulators OsRR2 and OsRR3
OsCKX4	Os01g0940000	LOC_Os01g71310	cytokinin	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Moreover, expression analysis revealed a significant alteration in the expression of auxin-related genes in the ren1-D mutants, indicating that the OsCKX4 mediates crown root development by integrating the interaction between cytokinin and auxin
OsCKX4	Os01g0940000	LOC_Os01g71310	crown	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Overexpression and RNA interference of OsCKX4 confirmed that OsCKX4 plays a positive role in crown root formation
OsCKX4	Os01g0940000	LOC_Os01g71310	crown	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Moreover, expression analysis revealed a significant alteration in the expression of auxin-related genes in the ren1-D mutants, indicating that the OsCKX4 mediates crown root development by integrating the interaction between cytokinin and auxin
OsCKX4	Os01g0940000	LOC_Os01g71310	crown root	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Overexpression and RNA interference of OsCKX4 confirmed that OsCKX4 plays a positive role in crown root formation
OsCKX4	Os01g0940000	LOC_Os01g71310	crown root	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Moreover, expression analysis revealed a significant alteration in the expression of auxin-related genes in the ren1-D mutants, indicating that the OsCKX4 mediates crown root development by integrating the interaction between cytokinin and auxin
OsCKX4	Os01g0940000	LOC_Os01g71310	root development	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Moreover, expression analysis revealed a significant alteration in the expression of auxin-related genes in the ren1-D mutants, indicating that the OsCKX4 mediates crown root development by integrating the interaction between cytokinin and auxin
OsCKX4	Os01g0940000	LOC_Os01g71310	root development	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Transgenic plants harboring OsCKX4 under the control of the root-specific promoter RCc3 displayed enhanced root development without affecting their shoot parts, suggesting that this strategy could be a powerful tool in rice root engineering
OsCKX4	Os01g0940000	LOC_Os01g71310	cytokinin response	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Furthermore, one-hybrid assays revealed that OsCKX4 is a direct binding target of both the auxin response factor OsARF25 and the cytokinin response regulators OsRR2 and OsRR3
OsCKX4	Os01g0940000	LOC_Os01g71310	auxin response	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.	Furthermore, one-hybrid assays revealed that OsCKX4 is a direct binding target of both the auxin response factor OsARF25 and the cytokinin response regulators OsRR2 and OsRR3
OsCKX9	Os05g0374200	LOC_Os05g31040	shoot	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Here we show that the cytokinin (CK) content is dramatically increased in shoot bases of the rice SL signaling mutant d53 By examining transcript levels of all the CK metabolism-related genes after treatment with SL analog GR24, we identified CYTOKININ OXIDASE/DEHYDROGENASE 9 (OsCKX9) as a primary response gene significantly up-regulated within 1 h of treatment in the wild type but not in d53 We also found that OsCKX9 functions as a cytosolic and nuclear dual-localized CK catabolic enzyme, and that the overexpression of OsCKX9 suppresses the browning of d53 calli
OsCKX9	Os05g0374200	LOC_Os05g31040	shoot	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCKX9	Os05g0374200	LOC_Os05g31040	panicle	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCKX9	Os05g0374200	LOC_Os05g31040	tiller	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCKX9	Os05g0374200	LOC_Os05g31040	cytokinin	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Here we show that the cytokinin (CK) content is dramatically increased in shoot bases of the rice SL signaling mutant d53 By examining transcript levels of all the CK metabolism-related genes after treatment with SL analog GR24, we identified CYTOKININ OXIDASE/DEHYDROGENASE 9 (OsCKX9) as a primary response gene significantly up-regulated within 1 h of treatment in the wild type but not in d53 We also found that OsCKX9 functions as a cytosolic and nuclear dual-localized CK catabolic enzyme, and that the overexpression of OsCKX9 suppresses the browning of d53 calli
OsCKX9	Os05g0374200	LOC_Os05g31040	architecture	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCKX9	Os05g0374200	LOC_Os05g31040	homeostasis	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCKX9	Os05g0374200	LOC_Os05g31040	height	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCKX9	Os05g0374200	LOC_Os05g31040	plant height	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCKX9	Os05g0374200	LOC_Os05g31040	panicle size	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCKX9	Os05g0374200	LOC_Os05g31040	tiller number	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCKX9	Os05g0374200	LOC_Os05g31040	shoot architecture	Strigolactone promotes cytokinin degradation through transcriptional activation of CYTOKININ OXIDASE/DEHYDROGENASE 9 in rice.	Both the CRISPR/Cas9-generated OsCKX9 mutants and OsCKX9-overexpressing transgenic plants showed significant increases in tiller number and decreases in plant height and panicle size, suggesting that the homeostasis of OsCKX9 plays a critical role in regulating rice shoot architecture
OsCLC-1	None	None	leaf	Molecular cloning, functional expression and subcellular localization of two putative vacuolar voltage-gated chloride channels in rice (Oryza sativa L.)	OsCLC-1 was expressed in most tissues, whereas OsCLC-2 was expressed only in the roots, nodes, internodes and leaf sheaths
OsCLC-1	None	None	root	Molecular cloning, functional expression and subcellular localization of two putative vacuolar voltage-gated chloride channels in rice (Oryza sativa L.)	OsCLC-1 was expressed in most tissues, whereas OsCLC-2 was expressed only in the roots, nodes, internodes and leaf sheaths
OsCLC-1	None	None	sheath	Molecular cloning, functional expression and subcellular localization of two putative vacuolar voltage-gated chloride channels in rice (Oryza sativa L.)	OsCLC-1 was expressed in most tissues, whereas OsCLC-2 was expressed only in the roots, nodes, internodes and leaf sheaths
OsCLC-2	Os02g0558100	LOC_Os02g35190	leaf	Molecular cloning, functional expression and subcellular localization of two putative vacuolar voltage-gated chloride channels in rice (Oryza sativa L.)	OsCLC-1 was expressed in most tissues, whereas OsCLC-2 was expressed only in the roots, nodes, internodes and leaf sheaths
OsCLC-2	Os02g0558100	LOC_Os02g35190	root	Molecular cloning, functional expression and subcellular localization of two putative vacuolar voltage-gated chloride channels in rice (Oryza sativa L.)	OsCLC-1 was expressed in most tissues, whereas OsCLC-2 was expressed only in the roots, nodes, internodes and leaf sheaths
OsCLC-2	Os02g0558100	LOC_Os02g35190	sheath	Molecular cloning, functional expression and subcellular localization of two putative vacuolar voltage-gated chloride channels in rice (Oryza sativa L.)	OsCLC-1 was expressed in most tissues, whereas OsCLC-2 was expressed only in the roots, nodes, internodes and leaf sheaths
OsCLC1	Os01g0876100	LOC_Os01g65500	oxidative	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	SAPK4-regulated genes with functions in ion homeostasis and oxidative stress response were identified: the vacuolar H+-ATPase, the Na+/H+ antiporter NHX1, the Cl- channel OsCLC1 and a catalase
OsCLC1	Os01g0876100	LOC_Os01g65500	homeostasis	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	SAPK4-regulated genes with functions in ion homeostasis and oxidative stress response were identified: the vacuolar H+-ATPase, the Na+/H+ antiporter NHX1, the Cl- channel OsCLC1 and a catalase
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	histone trimethylation		
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	histone trimethylation		The expression of SDG711 and SDG718 is induced by LD and SD, respectively.
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	seed	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.	OsFIE1 specifically expressed in endosperm, and mRNA of OsFIE1 also enriched in inner seed coat with the corresponding PcG members of OsiEZ1 and OsCLF
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	stem	Regulation of plant height in rice by the Polycomb group genes OsEMF2b, OsFIE2 and OsCLF.	Reduced cell expansion and cell division of stem caused significant reduction of stem length during mature period of OsEMF2b, OsFIE2 and OsCLF RNAi transgenic plants
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	cell division	Regulation of plant height in rice by the Polycomb group genes OsEMF2b, OsFIE2 and OsCLF.	Reduced cell expansion and cell division of stem caused significant reduction of stem length during mature period of OsEMF2b, OsFIE2 and OsCLF RNAi transgenic plants
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	dwarf	Regulation of plant height in rice by the Polycomb group genes OsEMF2b, OsFIE2 and OsCLF.	To determine how PcG genes regulate plant height, we investigated the phenotypes of the emf2b mutant and OsEMF2b, OsFIE2 and OsCLF RNAi transgenic plants; they all exhibited dwarf phenotype
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	height	Regulation of plant height in rice by the Polycomb group genes OsEMF2b, OsFIE2 and OsCLF.	Therefore, we speculated that these PcG genes, OsFIE2, OsCLF and OsEMF2b, may work as a PRC2 to regulate rice height
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	plant height	Regulation of plant height in rice by the Polycomb group genes OsEMF2b, OsFIE2 and OsCLF.	To determine how PcG genes regulate plant height, we investigated the phenotypes of the emf2b mutant and OsEMF2b, OsFIE2 and OsCLF RNAi transgenic plants; they all exhibited dwarf phenotype
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	development	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	development	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	SDG711 is a histone H3K27me2/3 transmethylase in rice, a homolog of CLF in Arabidopsis, and plays key roles in regulating flowering time and panicle development
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	development	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	In this work, we investigated the role of SDG711 in rice seed development
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	panicle	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	SDG711 is a histone H3K27me2/3 transmethylase in rice, a homolog of CLF in Arabidopsis, and plays key roles in regulating flowering time and panicle development
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	seed	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	seed	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	In this work, we investigated the role of SDG711 in rice seed development
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	seed	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	Overexpression and downregulation of SDG711 lead to a decrease and increase in the expression level of genes related to starch accumulation, resulting in smaller seeds or even seed abortion
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	starch	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	starch	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	Overexpression and downregulation of SDG711 lead to a decrease and increase in the expression level of genes related to starch accumulation, resulting in smaller seeds or even seed abortion
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	starch	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	ChIP assay showed that SDG711-mediated H3K27me3 changed significantly in genes related to endosperm development, and SDG711 can directly bind to the gene body region of several starch synthesis genes and amylase genes
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	endosperm	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	ChIP assay showed that SDG711-mediated H3K27me3 changed significantly in genes related to endosperm development, and SDG711 can directly bind to the gene body region of several starch synthesis genes and amylase genes
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	flowering time	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	SDG711 is a histone H3K27me2/3 transmethylase in rice, a homolog of CLF in Arabidopsis, and plays key roles in regulating flowering time and panicle development
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	seed development	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	seed development	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	In this work, we investigated the role of SDG711 in rice seed development
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	endosperm development	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	ChIP assay showed that SDG711-mediated H3K27me3 changed significantly in genes related to endosperm development, and SDG711 can directly bind to the gene body region of several starch synthesis genes and amylase genes
OsCLF|SDG711	Os06g0275500	LOC_Os06g16390	flowering	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications	SDG711 is a histone H3K27me2/3 transmethylase in rice, a homolog of CLF in Arabidopsis, and plays key roles in regulating flowering time and panicle development
OsCLIP	Os07g0525100	LOC_Os07g34110	iaa	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	Furthermore, (3) H-indole-3-acetic acid ((3) H-IAA) transport assays revealed that OsCLIP transported IAA into yeast cells, which was promoted by OsCOLE1
OsCLIP	Os07g0525100	LOC_Os07g34110	IAA	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	Furthermore, (3) H-indole-3-acetic acid ((3) H-IAA) transport assays revealed that OsCLIP transported IAA into yeast cells, which was promoted by OsCOLE1
OsCLP	Os01g0937050	LOC_Os01g71080	defense	Characterization of a newly identified rice chitinase-like protein (OsCLP) homologous to xylanase inhibitor	These data suggest that OsCLP, which has chitinase activity, may play an important role in plant defenses against pathogens
OsCLP	Os01g0937050	LOC_Os01g71080	cell wall	Characterization of a newly identified rice chitinase-like protein (OsCLP) homologous to xylanase inhibitor	In addition, exogenous treatment with OsCLP affected the growth of the basidiomycete fungus Rhizoctonia solani through degradation of the hyphal cell wall
OsCLP	Os01g0937050	LOC_Os01g71080	growth	Characterization of a newly identified rice chitinase-like protein (OsCLP) homologous to xylanase inhibitor	In addition, exogenous treatment with OsCLP affected the growth of the basidiomycete fungus Rhizoctonia solani through degradation of the hyphal cell wall
OsCLP	Os01g0937050	LOC_Os01g71080	root	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	A T-DNA insertion mutant of OsCLP (osclp) showed significant retardation of root and shoot growth
OsCLP	Os01g0937050	LOC_Os01g71080	root	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	A comparative proteomic analysis was carried out using root tissue of wild-type and the osclp mutant to understand the OsCLP-mediated rice growth retardation
OsCLP	Os01g0937050	LOC_Os01g71080	root	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Exogenous application of Ca(2+) resulted in successful recovery of both primary and lateral root growth in osclp
OsCLP	Os01g0937050	LOC_Os01g71080	growth	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	A T-DNA insertion mutant of OsCLP (osclp) showed significant retardation of root and shoot growth
OsCLP	Os01g0937050	LOC_Os01g71080	growth	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	A comparative proteomic analysis was carried out using root tissue of wild-type and the osclp mutant to understand the OsCLP-mediated rice growth retardation
OsCLP	Os01g0937050	LOC_Os01g71080	growth	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Exogenous application of Ca(2+) resulted in successful recovery of both primary and lateral root growth in osclp
OsCLP	Os01g0937050	LOC_Os01g71080	growth	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Moreover, overexpression of OsCLP resulted in improved growth with modified seed shape and starch structure; however, the overall yield remained unaffected
OsCLP	Os01g0937050	LOC_Os01g71080	growth	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Taken together, our results highlight the involvement of OsCLP in rice growth by regulating the intracellular calcium concentrations
OsCLP	Os01g0937050	LOC_Os01g71080	shoot	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	A T-DNA insertion mutant of OsCLP (osclp) showed significant retardation of root and shoot growth
OsCLP	Os01g0937050	LOC_Os01g71080	seed	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Moreover, overexpression of OsCLP resulted in improved growth with modified seed shape and starch structure; however, the overall yield remained unaffected
OsCLP	Os01g0937050	LOC_Os01g71080	starch	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Moreover, overexpression of OsCLP resulted in improved growth with modified seed shape and starch structure; however, the overall yield remained unaffected
OsCLP	Os01g0937050	LOC_Os01g71080	yield	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Moreover, overexpression of OsCLP resulted in improved growth with modified seed shape and starch structure; however, the overall yield remained unaffected
OsCLP	Os01g0937050	LOC_Os01g71080	stress	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Results obtained revealed that proteins related to glycolysis (phosphoglycerate kinase), stress adaption (chaperonin) and calcium signaling (calreticulin and CDPK1) were differentially regulated in osclp roots
OsCLP	Os01g0937050	LOC_Os01g71080	lateral root	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Exogenous application of Ca(2+) resulted in successful recovery of both primary and lateral root growth in osclp
OsCLP	Os01g0937050	LOC_Os01g71080	calcium	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Results obtained revealed that proteins related to glycolysis (phosphoglycerate kinase), stress adaption (chaperonin) and calcium signaling (calreticulin and CDPK1) were differentially regulated in osclp roots
OsCLP	Os01g0937050	LOC_Os01g71080	calcium	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Fura-2 molecular probe staining, which is an intracellular calcium indicator, and ICP-MS analysis suggested that the intracellular calcium content was significantly lower in roots of osclp as compared to the wild-type
OsCLP	Os01g0937050	LOC_Os01g71080	calcium	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Taken together, our results highlight the involvement of OsCLP in rice growth by regulating the intracellular calcium concentrations
OsClpP5	Os03g0308100	LOC_Os03g19510	chloroplast	An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice	Here, we show that a spontaneous mutable virescent allele, pyl-v, is caused by the disruption of the nuclear-coded essential chloroplast protease gene, OsClpP5, due to insertion of a 607-bp non-autonomous DNA transposon, non-autonomous DNA-based active rice transposon one (nDart1), belonging to the hAT superfamily
OsClpR1	Os05g0592100	LOC_Os05g51450	chloroplast	Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice	Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice
OsClpR1	Os05g0592100	LOC_Os05g51450	chloroplast	Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice	The OsClpR1 mutation affected the transcript levels of chlorophyll biosynthesis and chloroplast development-related genes
OsClpR1	Os05g0592100	LOC_Os05g51450	development	Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice	Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice
OsClpR1	Os05g0592100	LOC_Os05g51450	chloroplast development	Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice	Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice
OsClpR1	Os05g0592100	LOC_Os05g51450	chloroplast development	Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice	The OsClpR1 mutation affected the transcript levels of chlorophyll biosynthesis and chloroplast development-related genes
OsCLR1|DSNP1	Os06g0633500	LOC_Os06g42700	drought	Molecular functions of rice cytosol-localized RING finger protein 1 in response to salt and drought and comparative analysis of its grass orthologs.	 These results indicate the positive regulation of OsCLR1 in response to salt and drought in an ABA-dependent manner
OsCLR1|DSNP1	Os06g0633500	LOC_Os06g42700	salt	Molecular functions of rice cytosol-localized RING finger protein 1 in response to salt and drought and comparative analysis of its grass orthologs.	 These results indicate the positive regulation of OsCLR1 in response to salt and drought in an ABA-dependent manner
OsCLR1|DSNP1	Os06g0633500	LOC_Os06g42700	meiotic	The E3 ubiquitin ligase DESYNAPSIS1 regulates synapsis and recombination in rice meiosis.	 Accompanying the decreased foci of HEI10, ZIP4, and MER3 on meiotic chromosomes, the number of crossovers (COs) decreases dramatically in dsnp1 meiocytes
OsCLR1|DSNP1	Os06g0633500	LOC_Os06g42700	synapsis	The E3 ubiquitin ligase DESYNAPSIS1 regulates synapsis and recombination in rice meiosis	The E3 ubiquitin ligase DESYNAPSIS1 regulates synapsis and recombination in rice meiosis
OsCLR1|DSNP1	Os06g0633500	LOC_Os06g42700	recombination	The E3 ubiquitin ligase DESYNAPSIS1 regulates synapsis and recombination in rice meiosis	The E3 ubiquitin ligase DESYNAPSIS1 regulates synapsis and recombination in rice meiosis
OsCLR1|DSNP1	Os06g0633500	LOC_Os06g42700	meiosis	The E3 ubiquitin ligase DESYNAPSIS1 regulates synapsis and recombination in rice meiosis	The E3 ubiquitin ligase DESYNAPSIS1 regulates synapsis and recombination in rice meiosis
OsCLR1|DSNP1	Os06g0633500	LOC_Os06g42700	homologous recombination	The E3 ubiquitin ligase DESYNAPSIS1 regulates synapsis and recombination in rice meiosis	Here, we reveal that a functional RING finger E3 ubiquitin ligase, DESYNAPSIS1 (DSNP1), plays significant roles in SC assembly and homologous recombination during rice meiosis.
OsCLT1	Os01g0955700	LOC_Os01g72570	cadmium	OsCLT1, a CRT-like transporter 1, is required for glutathione homeostasis and arsenic tolerance in rice.	Osclt1 was also hypersensitive to cadmium (Cd)
OsCM	Os01g0764400	LOC_Os01g55870	leaf	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	In this study, the rice chorismate mutase (OsCM) gene was overexpressed in a bacterial leaf blight-susceptible rice line to investigate the functional role of OsCM in response to bacterial leaf blight stress
OsCM	Os01g0764400	LOC_Os01g55870	leaf	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	Further analysis revealed that OsCM expression induced phenylalanine accumulation and suppressed tyrosine accumulation in response to bacterial leaf blight stress
OsCM	Os01g0764400	LOC_Os01g55870	leaf	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	Furthermore, bacterial leaf blight stress induced genes downstream of the phenylpropanoid pathway in conjunction with OsCM, suggesting that the phenylpropanoid pathway is dependent on OsCM gene expression
OsCM	Os01g0764400	LOC_Os01g55870	blight	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	In this study, the rice chorismate mutase (OsCM) gene was overexpressed in a bacterial leaf blight-susceptible rice line to investigate the functional role of OsCM in response to bacterial leaf blight stress
OsCM	Os01g0764400	LOC_Os01g55870	blight	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	Further analysis revealed that OsCM expression induced phenylalanine accumulation and suppressed tyrosine accumulation in response to bacterial leaf blight stress
OsCM	Os01g0764400	LOC_Os01g55870	blight	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	Furthermore, bacterial leaf blight stress induced genes downstream of the phenylpropanoid pathway in conjunction with OsCM, suggesting that the phenylpropanoid pathway is dependent on OsCM gene expression
OsCM	Os01g0764400	LOC_Os01g55870	stress	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa
OsCM	Os01g0764400	LOC_Os01g55870	stress	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	In this study, the rice chorismate mutase (OsCM) gene was overexpressed in a bacterial leaf blight-susceptible rice line to investigate the functional role of OsCM in response to bacterial leaf blight stress
OsCM	Os01g0764400	LOC_Os01g55870	stress	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	We reported that overexpression of OsCM altered the downstream pathway of aromatic amino acids, mitigating pathogen stress by altering stress-responsive genes and hormonal accumulation
OsCM	Os01g0764400	LOC_Os01g55870	stress	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	Further analysis revealed that OsCM expression induced phenylalanine accumulation and suppressed tyrosine accumulation in response to bacterial leaf blight stress
OsCM	Os01g0764400	LOC_Os01g55870	stress	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	Furthermore, bacterial leaf blight stress induced genes downstream of the phenylpropanoid pathway in conjunction with OsCM, suggesting that the phenylpropanoid pathway is dependent on OsCM gene expression
OsCM	Os01g0764400	LOC_Os01g55870	pathogen	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa	We reported that overexpression of OsCM altered the downstream pathway of aromatic amino acids, mitigating pathogen stress by altering stress-responsive genes and hormonal accumulation
OsCMK|OsIspE	Os01g0802100	LOC_Os01g58790	chloroplast	A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.	OsIspE is constitutively expressed in all tissues, and its encoded protein is targeted to the chloroplast
OsCMK|OsIspE	Os01g0802100	LOC_Os01g58790	map-based cloning	A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.	Map-based cloning revealed a missense mutation in OsIspE (LOC_Os01g58790) in gry340 mutant plants
OsCML16	Os01g0135700	LOC_Os01g04330	drought tolerance	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
OsCML16	Os01g0135700	LOC_Os01g04330	growth	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
OsCML16	Os01g0135700	LOC_Os01g04330	root growth	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
OsCML16	Os01g0135700	LOC_Os01g04330	root growth	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Our results demonstrated that OsERF48 regulates OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
OsCML16	Os01g0135700	LOC_Os01g04330	drought tolerance	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Our results demonstrated that OsERF48 regulates OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
OsCML16	Os01g0135700	LOC_Os01g04330	salt	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.	Furthermore, Ca2+ and TFP, a calmodulin (CaM) antagonist, were involved in the ABA-induced transcription of OsCML16 and its target genes, and they were also obviously induced by cold, drought, and salt stresses
OsCML16	Os01g0135700	LOC_Os01g04330	abiotic stress	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.
OsCML16	Os01g0135700	LOC_Os01g04330	abiotic stress	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.	Taken together, our new findings have provided the basis for the novel signaling pathways of OsCML16 in the abiotic stress response in rice
OsCML16	Os01g0135700	LOC_Os01g04330	salt stress	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.	Furthermore, Ca2+ and TFP, a calmodulin (CaM) antagonist, were involved in the ABA-induced transcription of OsCML16 and its target genes, and they were also obviously induced by cold, drought, and salt stresses
OsCML16	Os01g0135700	LOC_Os01g04330	stress	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.	Taken together, our new findings have provided the basis for the novel signaling pathways of OsCML16 in the abiotic stress response in rice
OsCML16	Os01g0135700	LOC_Os01g04330	biotic stress	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.
OsCML16	Os01g0135700	LOC_Os01g04330	biotic stress	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.	Taken together, our new findings have provided the basis for the novel signaling pathways of OsCML16 in the abiotic stress response in rice
OsCML16	Os01g0135700	LOC_Os01g04330	stress response	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.	Taken together, our new findings have provided the basis for the novel signaling pathways of OsCML16 in the abiotic stress response in rice
OsCML3	Os12g0132300	LOC_Os12g03816	plasma membrane	C-terminal extension of calmodulin-like 3 protein from Oryza sativa L.: interaction with a high mobility group target protein.	Moreover, OsCML3 was mainly localized in the plasma membrane, whereas OsCML3m was found in the nucleus
OsCML3	Os12g0132300	LOC_Os12g03816	nucleus	C-terminal extension of calmodulin-like 3 protein from Oryza sativa L.: interaction with a high mobility group target protein.	Moreover, OsCML3 was mainly localized in the plasma membrane, whereas OsCML3m was found in the nucleus
OsCML3	Os12g0132300	LOC_Os12g03816	nucleus	C-terminal extension of calmodulin-like 3 protein from Oryza sativa L.: interaction with a high mobility group target protein.	Taken together, OsCML3 probably provides a mechanism for manipulating the DNA-binding ability of OsHMGB1 in the nucleus and its C-terminal extension provides an intracellular Ca(2+) regulatory switch
OsCML4	Os03g0743500	LOC_Os03g53200	stress	Identification of the OsCML4 Gene in Rice Related to Salt Stress Using QTL Analysis.	Identification of the OsCML4 Gene in Rice Related to Salt Stress Using QTL Analysis.
OsCML4	Os03g0743500	LOC_Os03g53200	salt	Identification of the OsCML4 Gene in Rice Related to Salt Stress Using QTL Analysis.	Identification of the OsCML4 Gene in Rice Related to Salt Stress Using QTL Analysis.
OsCML4	Os03g0743500	LOC_Os03g53200	salt stress	Identification of the OsCML4 Gene in Rice Related to Salt Stress Using QTL Analysis.	Identification of the OsCML4 Gene in Rice Related to Salt Stress Using QTL Analysis.
OsCMO	Os06g0698785	LOC_Os06g48510	seedling	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica)	Surprisingly, a large amount of truncated proteins derived from OsCMO was induced in the rice seedlings in response to salt stresses
OsCMO	Os06g0698785	LOC_Os06g48510	salt stress	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica)	Northern blot demonstrated the transcription of OsCMO is enhanced by salt stress
OsCMO	Os06g0698785	LOC_Os06g48510	salt stress	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica)	Transgenic tobacco plants overexpressing OsCMO results in increased GB content and elevated tolerance to salt stress
OsCMO	Os06g0698785	LOC_Os06g48510	salt stress	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica)	Surprisingly, a large amount of truncated proteins derived from OsCMO was induced in the rice seedlings in response to salt stresses
OsCMO	Os06g0698785	LOC_Os06g48510	salt stress	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica)	KEY MESSAGE: Expression and transgenic studies demonstrate OsCMO is transcriptionally induced in response to salt stress and functions in increasing glycinebetaine accumulation and enhancing tolerance to salt stress
OsCMO	Os06g0698785	LOC_Os06g48510	salt	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica)	Northern blot demonstrated the transcription of OsCMO is enhanced by salt stress
OsCMO	Os06g0698785	LOC_Os06g48510	salt	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica)	Transgenic tobacco plants overexpressing OsCMO results in increased GB content and elevated tolerance to salt stress
OsCMO	Os06g0698785	LOC_Os06g48510	salt	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica)	Surprisingly, a large amount of truncated proteins derived from OsCMO was induced in the rice seedlings in response to salt stresses
OsCMO	Os06g0698785	LOC_Os06g48510	salt	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica)	KEY MESSAGE: Expression and transgenic studies demonstrate OsCMO is transcriptionally induced in response to salt stress and functions in increasing glycinebetaine accumulation and enhancing tolerance to salt stress
OsCMO	Os06g0698785	LOC_Os06g48510	salt	The Accumulation of Glycine Betaine Is Dependent on Choline Monooxygenase (OsCMO), Not on Phosphoethanolamine N-Methyltransferase (OsPEAMT1), in Rice (Oryza sativa L. ssp. japonica)	However, the intracellular GB level and the tolerance to salt stress of the transgenic lines overexpressing OsCMO were significantly enhanced
OsCMO	Os06g0698785	LOC_Os06g48510	tolerance	The Accumulation of Glycine Betaine Is Dependent on Choline Monooxygenase (OsCMO), Not on Phosphoethanolamine N-Methyltransferase (OsPEAMT1), in Rice (Oryza sativa L. ssp. japonica)	However, the intracellular GB level and the tolerance to salt stress of the transgenic lines overexpressing OsCMO were significantly enhanced
OsCMO	Os06g0698785	LOC_Os06g48510	salt stress	The Accumulation of Glycine Betaine Is Dependent on Choline Monooxygenase (OsCMO), Not on Phosphoethanolamine N-Methyltransferase (OsPEAMT1), in Rice (Oryza sativa L. ssp. japonica)	However, the intracellular GB level and the tolerance to salt stress of the transgenic lines overexpressing OsCMO were significantly enhanced
OsCMO	Os06g0698785	LOC_Os06g48510	stress	The Accumulation of Glycine Betaine Is Dependent on Choline Monooxygenase (OsCMO), Not on Phosphoethanolamine N-Methyltransferase (OsPEAMT1), in Rice (Oryza sativa L. ssp. japonica)	However, the intracellular GB level and the tolerance to salt stress of the transgenic lines overexpressing OsCMO were significantly enhanced
OsCMT3a	Os10g0104900	LOC_Os10g01570	plant development	Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition.	To understand the role of non-CG methylation in the suppression of TEs and in plant development, we characterized rice mutants of the chromomethylase gene, OsCMT3a
OsCNGC13	Os06g0207700	LOC_Os06g10580	growth	OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues.	OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues.
OsCNGC13	Os06g0207700	LOC_Os06g10580	pollen	OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues.	OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues.
OsCNGC13	Os06g0207700	LOC_Os06g10580	pollen	OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues.	Based on these results, we propose that OsCNGC13 acts as a novel maternal sporophytic factor required for stylar [Ca2+]cyt accumulation, ECM components modification and STT cell death, thus facilitating the penetration of pollen tube in the style for successful double fertilization and seed-setting in rice
OsCNGC13	Os06g0207700	LOC_Os06g10580	cell death	OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues.	Based on these results, we propose that OsCNGC13 acts as a novel maternal sporophytic factor required for stylar [Ca2+]cyt accumulation, ECM components modification and STT cell death, thus facilitating the penetration of pollen tube in the style for successful double fertilization and seed-setting in rice
OsCNGC13	Os06g0207700	LOC_Os06g10580	calcium	OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues.	We show that OsCNGC13 is permeable to Ca2+ Consistent with this, accumulation of cytoplasmic calcium concentration ([Ca2+]cyt) is defective in the sss1-D mutant style after pollination
OsCNIH1	Os06g0136500	LOC_Os06g04500	transporter	Identification of rice cornichon as a possible cargo receptor for the Golgi-localized sodium transporter OsHKT1;3.	Here it is demonstrated at the cellular level that rice cornichon OsCNIH1 interacts with OsHKT1;3 and, in yeast cells, enables the expression of the sodium transporter to the Golgi apparatus
OsCNX	Os04g0402100	LOC_Os04g32950	drought	Heterologous expression of rice calnexin (OsCNX) confers drought tolerance in Nicotiana tabacum	Heterologous expression of rice calnexin (OsCNX) confers drought tolerance in Nicotiana tabacum
OsCNX	Os04g0402100	LOC_Os04g32950	drought tolerance	Heterologous expression of rice calnexin (OsCNX) confers drought tolerance in Nicotiana tabacum	Heterologous expression of rice calnexin (OsCNX) confers drought tolerance in Nicotiana tabacum
OsCNX1	Os04g0661600	LOC_Os04g56620	map-based cloning	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Map-based cloning showed that OsCNX6 and OsCNX1 encoding homologs of MoaE and MoeA were responsible for F254 and F5-1 mutants, respectively
OsCNX6	Os02g0140300	LOC_Os02g04740	seedling	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Genetic complementation indicated that OsCNX6 not only rescued the PHS and seedling lethal phenotype of cnx6 mutant, but also recovered the MoCo-dependent enzyme activities such as xanthine dehydrogenase (XDH), aldehyde oxidase (AO), nitrate reductase (NR), and sulfite oxidase (SO)
OsCNX6	Os02g0140300	LOC_Os02g04740	seed	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Expression pattern showed that OsCNX6 was richly expressed in seed during embryo maturation by qRT-PCR and RNA in situ hybridization
OsCNX6	Os02g0140300	LOC_Os02g04740	seed	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Collectively, these data described that OsCNX6 participated in MoCo biosynthesis, and is essential for rice development, especially for seed dormancy and germination, and OsCNX6 could be an effective target for improving abiotic stress tolerance in rice
OsCNX6	Os02g0140300	LOC_Os02g04740	map-based cloning	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Map-based cloning showed that OsCNX6 and OsCNX1 encoding homologs of MoaE and MoeA were responsible for F254 and F5-1 mutants, respectively
OsCNX6	Os02g0140300	LOC_Os02g04740	salt	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Furthermore, the OsCNX6 overexpression plants can significantly enhance the MoCo-dependent enzyme activities, and improved the osmotic and salt stress tolerance without unfavorable phenotypes
OsCNX6	Os02g0140300	LOC_Os02g04740	tolerance	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Furthermore, the OsCNX6 overexpression plants can significantly enhance the MoCo-dependent enzyme activities, and improved the osmotic and salt stress tolerance without unfavorable phenotypes
OsCNX6	Os02g0140300	LOC_Os02g04740	tolerance	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Collectively, these data described that OsCNX6 participated in MoCo biosynthesis, and is essential for rice development, especially for seed dormancy and germination, and OsCNX6 could be an effective target for improving abiotic stress tolerance in rice
OsCNX6	Os02g0140300	LOC_Os02g04740	abiotic stress	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Collectively, these data described that OsCNX6 participated in MoCo biosynthesis, and is essential for rice development, especially for seed dormancy and germination, and OsCNX6 could be an effective target for improving abiotic stress tolerance in rice
OsCNX6	Os02g0140300	LOC_Os02g04740	salt stress	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Furthermore, the OsCNX6 overexpression plants can significantly enhance the MoCo-dependent enzyme activities, and improved the osmotic and salt stress tolerance without unfavorable phenotypes
OsCNX6	Os02g0140300	LOC_Os02g04740	stress	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Furthermore, the OsCNX6 overexpression plants can significantly enhance the MoCo-dependent enzyme activities, and improved the osmotic and salt stress tolerance without unfavorable phenotypes
OsCNX6	Os02g0140300	LOC_Os02g04740	stress	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Collectively, these data described that OsCNX6 participated in MoCo biosynthesis, and is essential for rice development, especially for seed dormancy and germination, and OsCNX6 could be an effective target for improving abiotic stress tolerance in rice
OsCNX6	Os02g0140300	LOC_Os02g04740	biotic stress	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Collectively, these data described that OsCNX6 participated in MoCo biosynthesis, and is essential for rice development, especially for seed dormancy and germination, and OsCNX6 could be an effective target for improving abiotic stress tolerance in rice
OsCNX6	Os02g0140300	LOC_Os02g04740	nitrate	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Genetic complementation indicated that OsCNX6 not only rescued the PHS and seedling lethal phenotype of cnx6 mutant, but also recovered the MoCo-dependent enzyme activities such as xanthine dehydrogenase (XDH), aldehyde oxidase (AO), nitrate reductase (NR), and sulfite oxidase (SO)
OsCNX6	Os02g0140300	LOC_Os02g04740	stress tolerance	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Furthermore, the OsCNX6 overexpression plants can significantly enhance the MoCo-dependent enzyme activities, and improved the osmotic and salt stress tolerance without unfavorable phenotypes
OsCNX6	Os02g0140300	LOC_Os02g04740	stress tolerance	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Collectively, these data described that OsCNX6 participated in MoCo biosynthesis, and is essential for rice development, especially for seed dormancy and germination, and OsCNX6 could be an effective target for improving abiotic stress tolerance in rice
OsCNX6	Os02g0140300	LOC_Os02g04740	dormancy	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	Collectively, these data described that OsCNX6 participated in MoCo biosynthesis, and is essential for rice development, especially for seed dormancy and germination, and OsCNX6 could be an effective target for improving abiotic stress tolerance in rice
OsCO3	Os09g0240200	LOC_Os09g06464	flowering time	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	Our results suggest that OsCO3 primarily controls flowering time under SD conditions by negatively regulating Hd3a and FTL expression, independent of the SD-promotion pathway
OsCO3	Os09g0240200	LOC_Os09g06464	flower	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	Here, we demonstrate that a novel COL gene, OsCO3, containing a single B-box and a CCT domain, modulates photoperiodic flowering in rice
OsCO3	Os09g0240200	LOC_Os09g06464	flower	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	Overexpression of OsCO3 specifically caused late flowering under short day (SD) conditions relative to wild-type rice plants
OsCO3	Os09g0240200	LOC_Os09g06464	flower	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	Our results suggest that OsCO3 primarily controls flowering time under SD conditions by negatively regulating Hd3a and FTL expression, independent of the SD-promotion pathway
OsCO3	Os09g0240200	LOC_Os09g06464	flower	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	brown planthopper	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense	We silenced OsCOI1 in rice plants via RNA interference (RNAi) to determine the role of OsCOI1 in rice defense against rice leaf folder (LF) Cnaphalocrocis medinalis, a chewing insect, and brown planthopper (BPH) Nilaparvata lugens, a phloem-feeding insect
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	insect	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense	We silenced OsCOI1 in rice plants via RNA interference (RNAi) to determine the role of OsCOI1 in rice defense against rice leaf folder (LF) Cnaphalocrocis medinalis, a chewing insect, and brown planthopper (BPH) Nilaparvata lugens, a phloem-feeding insect
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	insect	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense	These results suggest that OsCOI1 is an indispensable signaling component, controlling JA-regulated defense against chewing insect (LF) in rice plants, and COI1 is also required for induction of TrypPI, POD and PPO in rice defense response to LF infestation
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	jasmonate	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense	In wild-type rice plants (WT), the transcripts of OsCOI1 were strongly and continuously up-regulated by LF infestation and methyl jasmonate (MeJA) treatment, but not by BPH infestation
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	drought	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Thus, our study suggests that OsbHLH148 acts on an initial response of jasmonate-regulated gene expression toward drought tolerance, constituting the OsbHLH148-OsJAZ-OsCOI1 signaling module in rice
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	leaf	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense	We silenced OsCOI1 in rice plants via RNA interference (RNAi) to determine the role of OsCOI1 in rice defense against rice leaf folder (LF) Cnaphalocrocis medinalis, a chewing insect, and brown planthopper (BPH) Nilaparvata lugens, a phloem-feeding insect
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	defense response	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense	These results suggest that OsCOI1 is an indispensable signaling component, controlling JA-regulated defense against chewing insect (LF) in rice plants, and COI1 is also required for induction of TrypPI, POD and PPO in rice defense response to LF infestation
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	defense	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense	We silenced OsCOI1 in rice plants via RNA interference (RNAi) to determine the role of OsCOI1 in rice defense against rice leaf folder (LF) Cnaphalocrocis medinalis, a chewing insect, and brown planthopper (BPH) Nilaparvata lugens, a phloem-feeding insect
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	defense	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense	These results suggest that OsCOI1 is an indispensable signaling component, controlling JA-regulated defense against chewing insect (LF) in rice plants, and COI1 is also required for induction of TrypPI, POD and PPO in rice defense response to LF infestation
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	 ja 	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense	Silencing OsCOI1 did not alter LF-induced LOX activity and JA content, but it led to a reduction in the TrypPI content, POD and PPO activity by 62
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	drought tolerance	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Thus, our study suggests that OsbHLH148 acts on an initial response of jasmonate-regulated gene expression toward drought tolerance, constituting the OsbHLH148-OsJAZ-OsCOI1 signaling module in rice
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	jasmonate	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Thus, our study suggests that OsbHLH148 acts on an initial response of jasmonate-regulated gene expression toward drought tolerance, constituting the OsbHLH148-OsJAZ-OsCOI1 signaling module in rice
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	 BR 	Jasmonic acid-mediated defense suppresses brassinosteroid-mediated susceptibility to Rice black streaked dwarf virus infection in rice	MeJA application efficiently suppressed the expression of BR pathway genes, and this inhibition depended on the JA coreceptor OsCOI1
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	 ja 	Jasmonic acid-mediated defense suppresses brassinosteroid-mediated susceptibility to Rice black streaked dwarf virus infection in rice	MeJA application efficiently suppressed the expression of BR pathway genes, and this inhibition depended on the JA coreceptor OsCOI1
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	JA	Jasmonic acid-mediated defense suppresses brassinosteroid-mediated susceptibility to Rice black streaked dwarf virus infection in rice	MeJA application efficiently suppressed the expression of BR pathway genes, and this inhibition depended on the JA coreceptor OsCOI1
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	fertility	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 The oscoi2 mutants, but not the oscoi1a and oscoi1b mutants, exhibited severely low fertility, indicating the crucial role of OsCOI2 in rice fertility
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	jasmonate	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 Transcriptomic analysis revealed that the transcriptional changes after methyl jasmonate (MeJA) treatment were moderate in the leaves of oscoi2 mutants compared to those in the wild-type or oscoi1a and oscoi1b mutants
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	methyl jasmonate	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 Transcriptomic analysis revealed that the transcriptional changes after methyl jasmonate (MeJA) treatment were moderate in the leaves of oscoi2 mutants compared to those in the wild-type or oscoi1a and oscoi1b mutants
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	leaf	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	leaf senescence	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	root	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	growth	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	spikelet	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	grain	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	grain size	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	ja	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI2 binds to most individual OsJAZs in the presence of endogenous JA ligands, as OsCOI1a /1b do, albeit with greater partner selectivity
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	JA	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI2 binds to most individual OsJAZs in the presence of endogenous JA ligands, as OsCOI1a /1b do, albeit with greater partner selectivity
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	root growth	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	male sterility	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	spikelet development	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1|OsCOI1a	Os01g0853400	LOC_Os01g63420	 ja 	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI2 binds to most individual OsJAZs in the presence of endogenous JA ligands, as OsCOI1a /1b do, albeit with greater partner selectivity
OsCOI1b	Os05g0449500	LOC_Os05g37690	JA receptor	Jasmonic acid regulates spikelet development in rice	We show that EG1 is a plastid-targeted lipase that participates in JA biosynthesis, and EG2/OsJAZ1 is a JA signalling repressor that interacts with a putative JA receptor, OsCOI1b, to trigger OsJAZ1's degradation during spikelet development
OsCOI1b	Os05g0449500	LOC_Os05g37690	leaf	Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.	Here, we use the oscoi1b-1 knockout mutants to show that OsCOI1b mainly affects leaf senescence under senescence-promoting conditions
OsCOI1b	Os05g0449500	LOC_Os05g37690	leaf	Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.	The Arabidopsis coi1-1 plants containing 35S:OsCOI1a or 35S:OsCOI1b rescued the delayed leaf senescence during dark incubation, suggesting that both OsCOI1a and OsCOI1b are required for promoting leaf senescence in rice
OsCOI1b	Os05g0449500	LOC_Os05g37690	senescence	Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.	Here, we use the oscoi1b-1 knockout mutants to show that OsCOI1b mainly affects leaf senescence under senescence-promoting conditions
OsCOI1b	Os05g0449500	LOC_Os05g37690	senescence	Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.	The Arabidopsis coi1-1 plants containing 35S:OsCOI1a or 35S:OsCOI1b rescued the delayed leaf senescence during dark incubation, suggesting that both OsCOI1a and OsCOI1b are required for promoting leaf senescence in rice
OsCOI1b	Os05g0449500	LOC_Os05g37690	leaf senescence	Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence	Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence
OsCOI1b	Os05g0449500	LOC_Os05g37690	fertility	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 The oscoi2 mutants, but not the oscoi1a and oscoi1b mutants, exhibited severely low fertility, indicating the crucial role of OsCOI2 in rice fertility
OsCOI1b	Os05g0449500	LOC_Os05g37690	jasmonate	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 Transcriptomic analysis revealed that the transcriptional changes after methyl jasmonate (MeJA) treatment were moderate in the leaves of oscoi2 mutants compared to those in the wild-type or oscoi1a and oscoi1b mutants
OsCOI1b	Os05g0449500	LOC_Os05g37690	methyl jasmonate	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 Transcriptomic analysis revealed that the transcriptional changes after methyl jasmonate (MeJA) treatment were moderate in the leaves of oscoi2 mutants compared to those in the wild-type or oscoi1a and oscoi1b mutants
OsCOI1b	Os05g0449500	LOC_Os05g37690	leaf	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1b	Os05g0449500	LOC_Os05g37690	leaf senescence	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1b	Os05g0449500	LOC_Os05g37690	root	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1b	Os05g0449500	LOC_Os05g37690	growth	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1b	Os05g0449500	LOC_Os05g37690	spikelet	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1b	Os05g0449500	LOC_Os05g37690	grain	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1b	Os05g0449500	LOC_Os05g37690	grain size	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1b	Os05g0449500	LOC_Os05g37690	root growth	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1b	Os05g0449500	LOC_Os05g37690	male sterility	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI1b	Os05g0449500	LOC_Os05g37690	spikelet development	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	seedlings	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 In contrast, assessment of growth inhibition upon exogenous application of JA to seedlings of each mutant revealed that rice COIs are redundantly involved in shoot growth, whereas OsCOI2 plays a primary role in root growth
OsCOI2	Os03g0265500	LOC_Os03g15880	root	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 In contrast, assessment of growth inhibition upon exogenous application of JA to seedlings of each mutant revealed that rice COIs are redundantly involved in shoot growth, whereas OsCOI2 plays a primary role in root growth
OsCOI2	Os03g0265500	LOC_Os03g15880	growth	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 In contrast, assessment of growth inhibition upon exogenous application of JA to seedlings of each mutant revealed that rice COIs are redundantly involved in shoot growth, whereas OsCOI2 plays a primary role in root growth
OsCOI2	Os03g0265500	LOC_Os03g15880	shoot	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 In contrast, assessment of growth inhibition upon exogenous application of JA to seedlings of each mutant revealed that rice COIs are redundantly involved in shoot growth, whereas OsCOI2 plays a primary role in root growth
OsCOI2	Os03g0265500	LOC_Os03g15880	fertility	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 The oscoi2 mutants, but not the oscoi1a and oscoi1b mutants, exhibited severely low fertility, indicating the crucial role of OsCOI2 in rice fertility
OsCOI2	Os03g0265500	LOC_Os03g15880	jasmonate	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.
OsCOI2	Os03g0265500	LOC_Os03g15880	jasmonate	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 Transcriptomic analysis revealed that the transcriptional changes after methyl jasmonate (MeJA) treatment were moderate in the leaves of oscoi2 mutants compared to those in the wild-type or oscoi1a and oscoi1b mutants
OsCOI2	Os03g0265500	LOC_Os03g15880	ja	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 These results indicate that OsCOI2 plays a central role in JA response in rice leaves
OsCOI2	Os03g0265500	LOC_Os03g15880	ja	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 In contrast, assessment of growth inhibition upon exogenous application of JA to seedlings of each mutant revealed that rice COIs are redundantly involved in shoot growth, whereas OsCOI2 plays a primary role in root growth
OsCOI2	Os03g0265500	LOC_Os03g15880	JA	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 These results indicate that OsCOI2 plays a central role in JA response in rice leaves
OsCOI2	Os03g0265500	LOC_Os03g15880	JA	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 In contrast, assessment of growth inhibition upon exogenous application of JA to seedlings of each mutant revealed that rice COIs are redundantly involved in shoot growth, whereas OsCOI2 plays a primary role in root growth
OsCOI2	Os03g0265500	LOC_Os03g15880	root growth	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 In contrast, assessment of growth inhibition upon exogenous application of JA to seedlings of each mutant revealed that rice COIs are redundantly involved in shoot growth, whereas OsCOI2 plays a primary role in root growth
OsCOI2	Os03g0265500	LOC_Os03g15880	chlorophyll	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 MeJA-induced chlorophyll degradation and accumulation of antimicrobial secondary metabolites were suppressed in oscoi2 mutants
OsCOI2	Os03g0265500	LOC_Os03g15880	methyl jasmonate	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 Transcriptomic analysis revealed that the transcriptional changes after methyl jasmonate (MeJA) treatment were moderate in the leaves of oscoi2 mutants compared to those in the wild-type or oscoi1a and oscoi1b mutants
OsCOI2	Os03g0265500	LOC_Os03g15880	 ja 	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 These results indicate that OsCOI2 plays a central role in JA response in rice leaves
OsCOI2	Os03g0265500	LOC_Os03g15880	 ja 	Genome Editing Reveals both the Crucial Role of OsCOI2 in Jasmonate Signaling, and the Functional Diversity of COI1 Homologs in Rice Functional Diversity of COI1 Homologs in Rice.	 In contrast, assessment of growth inhibition upon exogenous application of JA to seedlings of each mutant revealed that rice COIs are redundantly involved in shoot growth, whereas OsCOI2 plays a primary role in root growth
OsCOI2	Os03g0265500	LOC_Os03g15880	leaf	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	leaf senescence	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	root	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	growth	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	spikelet	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	grain	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	grain size	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	ja	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI2 binds to most individual OsJAZs in the presence of endogenous JA ligands, as OsCOI1a /1b do, albeit with greater partner selectivity
OsCOI2	Os03g0265500	LOC_Os03g15880	JA	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI2 binds to most individual OsJAZs in the presence of endogenous JA ligands, as OsCOI1a /1b do, albeit with greater partner selectivity
OsCOI2	Os03g0265500	LOC_Os03g15880	defense	Functional dissection of rice jasmonate receptors involved in development and defense.	 However, the defense sectors regulated by OsCOI1a/1b and OsCOI2 clearly differed
OsCOI2	Os03g0265500	LOC_Os03g15880	root growth	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	male sterility	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	spikelet development	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI1b is involved in root growth and grain-size control and plays overlapping roles with OsCOI1a in spikelet development, while OsCOI2 regulates leaf senescence, male sterility, root growth, and grain size
OsCOI2	Os03g0265500	LOC_Os03g15880	 ja 	Functional dissection of rice jasmonate receptors involved in development and defense.	 OsCOI2 binds to most individual OsJAZs in the presence of endogenous JA ligands, as OsCOI1a /1b do, albeit with greater partner selectivity
OsCOIN	Os01g0104100	LOC_Os01g01420	temperature	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	OsCOIN is expressed in all rice organs and strongly induced by low temperature, ABA, salt and drought
OsCOIN	Os01g0104100	LOC_Os01g01420	drought	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	OsCOIN is expressed in all rice organs and strongly induced by low temperature, ABA, salt and drought
OsCOIN	Os01g0104100	LOC_Os01g01420	drought	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	Over-expression of OsCOIN in transgenic rice lines significantly enhanced their tolerance to cold, salt and drought, accompanied by an up-regulation of OsP5CS expression and an increase of cellular proline level
OsCOIN	Os01g0104100	LOC_Os01g01420	drought	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice
OsCOIN	Os01g0104100	LOC_Os01g01420	salt	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	OsCOIN is expressed in all rice organs and strongly induced by low temperature, ABA, salt and drought
OsCOIN	Os01g0104100	LOC_Os01g01420	salt	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	Over-expression of OsCOIN in transgenic rice lines significantly enhanced their tolerance to cold, salt and drought, accompanied by an up-regulation of OsP5CS expression and an increase of cellular proline level
OsCOIN	Os01g0104100	LOC_Os01g01420	salt	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice
OsCOIN	Os01g0104100	LOC_Os01g01420	chilling	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice
OsCOL10	Os03g0711100	LOC_Os03g50310	leaf	OsCOL10, a CONSTANS-like gene, functions as a flowering-time repressor downstream of Ghd7 in rice.	OsCOL10 is affected by the circadian clock and preferentially expressed in leaf mesophyll cells; it is localized to the nucleus and has transcriptional activation activity
OsCOL10	Os03g0711100	LOC_Os03g50310	nucleus	OsCOL10, a CONSTANS-like gene, functions as a flowering-time repressor downstream of Ghd7 in rice.	OsCOL10 is affected by the circadian clock and preferentially expressed in leaf mesophyll cells; it is localized to the nucleus and has transcriptional activation activity
OsCOL10	Os03g0711100	LOC_Os03g50310	flowering time	OsCOL10, a CONSTANS-like gene, functions as a flowering-time repressor downstream of Ghd7 in rice.	Transgenic rice plants overexpressing OsCOL10 (driven by a strong promoter or by fusing it to the activation domain of VP64) showed delayed flowering time under both short and long days
OsCOL13	Os07g0667300	LOC_Os07g47140	nucleus	A CONSTANS-like transcriptional activator, OsCOL13, functions as a negative regulator of flowering downstream of OsphyB and upstream of Ehd1 in rice.	We also demonstrated that OsCOL13 has a constitutive and rhythmic expression pattern, and that OsCOL13 is localized to the nucleus
OsCOL15	Os08g0536300	LOC_Os08g42440	grain	The rice CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	Real-time quantitative RT-PCR analysis of flowering regulator gene expression suggested that OsCOL15 suppresses flowering by up-regulating the flowering repressor Grain number, plant height and heading date 7 (Ghd7) and down-regulating the flowering activator Rice Indeterminate 1 (RID1), thus leading to the down-regulation of the flowering activators Early heading date 1, Heading date 3a, and RICE FLOWERING LOCUS T1
OsCOL15	Os08g0536300	LOC_Os08g42440	grain number	The rice CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	Real-time quantitative RT-PCR analysis of flowering regulator gene expression suggested that OsCOL15 suppresses flowering by up-regulating the flowering repressor Grain number, plant height and heading date 7 (Ghd7) and down-regulating the flowering activator Rice Indeterminate 1 (RID1), thus leading to the down-regulation of the flowering activators Early heading date 1, Heading date 3a, and RICE FLOWERING LOCUS T1
OsCOL15	Os08g0536300	LOC_Os08g42440	floral	The rice CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	We determined that OsCOL15 is most highly expressed in young organs and exhibits a diurnal expression pattern typical of other floral regulators
OsCOL15	Os08g0536300	LOC_Os08g42440	floral	The rice CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	These results demonstrate that OsCOL15 is an important floral regulator acting upstream of Ghd7 and RID1 in the rice photoperiodic flowering-time regulatory network
OsCOL15	Os08g0536300	LOC_Os08g42440	nucleus	The rice CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	Consistent with a function in transcriptional regulation, OsCOL15 localized to the nucleus
OsCOL15	Os08g0536300	LOC_Os08g42440	height	The rice CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	Real-time quantitative RT-PCR analysis of flowering regulator gene expression suggested that OsCOL15 suppresses flowering by up-regulating the flowering repressor Grain number, plant height and heading date 7 (Ghd7) and down-regulating the flowering activator Rice Indeterminate 1 (RID1), thus leading to the down-regulation of the flowering activators Early heading date 1, Heading date 3a, and RICE FLOWERING LOCUS T1
OsCOL15	Os08g0536300	LOC_Os08g42440	heading date	The rice CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	Real-time quantitative RT-PCR analysis of flowering regulator gene expression suggested that OsCOL15 suppresses flowering by up-regulating the flowering repressor Grain number, plant height and heading date 7 (Ghd7) and down-regulating the flowering activator Rice Indeterminate 1 (RID1), thus leading to the down-regulation of the flowering activators Early heading date 1, Heading date 3a, and RICE FLOWERING LOCUS T1
OsCOL15	Os08g0536300	LOC_Os08g42440	plant height	The rice CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	Real-time quantitative RT-PCR analysis of flowering regulator gene expression suggested that OsCOL15 suppresses flowering by up-regulating the flowering repressor Grain number, plant height and heading date 7 (Ghd7) and down-regulating the flowering activator Rice Indeterminate 1 (RID1), thus leading to the down-regulation of the flowering activators Early heading date 1, Heading date 3a, and RICE FLOWERING LOCUS T1
OsCOL16	Os06g0264200	LOC_Os06g15330	transcription factor	OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice.	OsCOL16 expression exhibits a diurnal oscillation and serves as a transcription factor with transcriptional activation activity
OsCOL16	Os06g0264200	LOC_Os06g15330	floral	OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice.	We determined that OsCOL16 up-regulates the expression of the floral repressor Ghd7, leading to down-regulation of the expression of Ehd1, Hd3a, and RFT1
OsCOL16	Os06g0264200	LOC_Os06g15330	flowering time	OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice.	Moreover, genetic diversity and evolutionary analyses suggest that remarkable differences in flowering times correlate with two major alleles of OsCOL16
OsCOL4	Os02g0610500	LOC_Os02g39710	flower	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	OsCOL4 null mutants flowered early under short or long days
OsCOL4	Os02g0610500	LOC_Os02g39710	flower	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	In contrast, OsCOL4 activation-tagging mutants (OsCOL4-D) flowered late in either environment
OsCOL4	Os02g0610500	LOC_Os02g39710	flower	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	By comparison, levels of Hd1, OsID1, OsMADS50, OsMADS51, and OsMADS56 transcripts were not significantly changed in oscol4 or OsCOL4-D, suggesting that OsCOL4 functions independently from previously reported flowering pathways
OsCOL4	Os02g0610500	LOC_Os02g39710	flower	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	In osphyB mutants, OsCOL4 expression was decreased and osphyB oscol4 double mutants flowered at the same time as the osphyB single mutants, indicating OsCOL4 functions downstream of OsphyB
OsCOL4	Os02g0610500	LOC_Os02g39710	flower	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB
OsCOL4	Os02g0610500	LOC_Os02g39710	growth	A Combination of Long-Day Suppressor Genes Contributes to the Northward Expansion of Rice	A minimum of four group A alleles of DTH8, Ghd7, Hd1, DTH7, PhyB, and OsCOL4 are required for the growth of cultivated rice at latitudes above 30 N
OsCOL4	Os02g0610500	LOC_Os02g39710	heading date	A Combination of Long-Day Suppressor Genes Contributes to the Northward Expansion of Rice	Genetic variations in DTH8, Ghd7, Hd1, DTH7, PhyB, and OsCOL4 are correlated with differences in heading date and the correlation between the genetic diversity of Hd6 and Se5 and rice heading data are weak
OsCOL4	Os02g0610500	LOC_Os02g39710	heading date	A Combination of Long-Day Suppressor Genes Contributes to the Northward Expansion of Rice	One group of haplotypes of DTH8, Ghd7, Hd1, DTH7, PhyB, and OsCOL4 are associated with earlier heading dates and appear to have accumulated during the northward expansion of rice cultivation
OsCOLE1	Os05g0529000	LOC_Os05g45280	stem	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	Overexpression of OsCOLE1 markedly increased the internode length and auxin content of the stem base, whereas these parameters were decreased in RNA interference (RNAi) plants
OsCOLE1	Os05g0529000	LOC_Os05g45280	development	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	The results indicate that OsCOLE1 affects rice development by regulating intracellular auxin transport through interaction with OsCLIP, which provides a new insight into the regulatory mechanism of intracellular transport of auxin and the roles of vacuoles in plant development
OsCOLE1	Os05g0529000	LOC_Os05g45280	auxin	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	Overexpression of OsCOLE1 markedly increased the internode length and auxin content of the stem base, whereas these parameters were decreased in RNA interference (RNAi) plants
OsCOLE1	Os05g0529000	LOC_Os05g45280	auxin	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	The results indicate that OsCOLE1 affects rice development by regulating intracellular auxin transport through interaction with OsCLIP, which provides a new insight into the regulatory mechanism of intracellular transport of auxin and the roles of vacuoles in plant development
OsCOLE1	Os05g0529000	LOC_Os05g45280	iaa	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	Furthermore, (3) H-indole-3-acetic acid ((3) H-IAA) transport assays revealed that OsCLIP transported IAA into yeast cells, which was promoted by OsCOLE1
OsCOLE1	Os05g0529000	LOC_Os05g45280	auxin transport	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	The results indicate that OsCOLE1 affects rice development by regulating intracellular auxin transport through interaction with OsCLIP, which provides a new insight into the regulatory mechanism of intracellular transport of auxin and the roles of vacuoles in plant development
OsCOLE1	Os05g0529000	LOC_Os05g45280	internode length	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	Overexpression of OsCOLE1 markedly increased the internode length and auxin content of the stem base, whereas these parameters were decreased in RNA interference (RNAi) plants
OsCOLE1	Os05g0529000	LOC_Os05g45280	IAA	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	Furthermore, (3) H-indole-3-acetic acid ((3) H-IAA) transport assays revealed that OsCLIP transported IAA into yeast cells, which was promoted by OsCOLE1
OsCOLE1	Os05g0529000	LOC_Os05g45280	plant development	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	The results indicate that OsCOLE1 affects rice development by regulating intracellular auxin transport through interaction with OsCLIP, which provides a new insight into the regulatory mechanism of intracellular transport of auxin and the roles of vacuoles in plant development
OsCOM1	Os06g0613400	LOC_Os06g41050	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Several key meiotic proteins, including ZEP1 and OsMER3, were not loaded normally onto chromosomes in Oscom1 mutants, whereas the localization of OsREC8, PAIR2 and PAIR3 seemed to be normal
OsCOM1	Os06g0613400	LOC_Os06g41050	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Moreover, OsCOM1 was loaded normally onto meiotic chromosomes in Osrec8, zep1 and Osmer3 mutants, but could not be properly loaded in Osam1, pair2 and OsSPO11-1(RNAi) plants
OsCOM1	Os06g0613400	LOC_Os06g41050	meiosis	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	These results provide direct evidence for the functions of OsCOM1 in promoting homologous synapsis and recombination in rice meiosis
OsCOM1	Os06g0613400	LOC_Os06g41050	meiosis	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis
OsCP1	Os04g0670500	LOC_Os04g57490	anther development	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsCP1	Os04g0670500	LOC_Os04g57490	pollen	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsCP1	Os04g0670500	LOC_Os04g57490	anther	Isolation and characterization of a rice cysteine protease gene, OSCP1, using T-DNA gene-trap system	GUS assay with the T-DNA tagged line indicated that the OsCP1 promoter was highly active in the rice anther
OsCP1	Os04g0670500	LOC_Os04g57490	anther	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsCP1	Os04g0670500	LOC_Os04g57490	fertility	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsCP1	Os04g0670500	LOC_Os04g57490	pollen	Isolation and characterization of a rice cysteine protease gene, OSCP1, using T-DNA gene-trap system	Taken together, the results demonstrated that OsCP1 is a cysteine protease gene that might play an important role in pollen development
OsCP1	Os04g0670500	LOC_Os04g57490	drought	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsCP12	Os03g0306800	LOC_Os03g19380	drought tolerance	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis
OsCP12	Os03g0306800	LOC_Os03g19380	chloroplast	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Interestingly, two chloroplast-localized proteins (OsCP12 and OsRP1) interacted with OsCTR1 in the cytosol, and ubiquitination by OsCTR1 led to protein degradation via the Ub 26S proteasome
OsCP12	Os03g0306800	LOC_Os03g19380	chloroplast	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis
OsCP12	Os03g0306800	LOC_Os03g19380	drought	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis
OsCPD1	Os11g0143200	LOC_Os11g04710	leaf	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD1	Os11g0143200	LOC_Os11g04710	growth	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 The overall growth and development of oscpd1 and oscpd2 single knock-out mutants was indistinguishable from the wild-type, whereas, the oscpd1 oscpd2 double mutant displayed multiple and obvious BR-related defects
OsCPD1	Os11g0143200	LOC_Os11g04710	development	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 The overall growth and development of oscpd1 and oscpd2 single knock-out mutants was indistinguishable from the wild-type, whereas, the oscpd1 oscpd2 double mutant displayed multiple and obvious BR-related defects
OsCPD1	Os11g0143200	LOC_Os11g04710	grain	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD1	Os11g0143200	LOC_Os11g04710	grain size	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD1	Os11g0143200	LOC_Os11g04710	brassinosteroid	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.
OsCPD1	Os11g0143200	LOC_Os11g04710	BR	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 There is still no genetic evidence so far about the requirement of OsCPD1 and OsCPD2 in rice BR biosynthesis
OsCPD1	Os11g0143200	LOC_Os11g04710	BR	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD1	Os11g0143200	LOC_Os11g04710	BR	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Taken together, our results provide direct genetic evidence that OsCPD1 and OsCPD2 play essential and redundant roles in maintenance of plant architecture by modulating BR biosynthesis in rice
OsCPD1	Os11g0143200	LOC_Os11g04710	Brassinosteroid	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.
OsCPD1	Os11g0143200	LOC_Os11g04710	architecture	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Taken together, our results provide direct genetic evidence that OsCPD1 and OsCPD2 play essential and redundant roles in maintenance of plant architecture by modulating BR biosynthesis in rice
OsCPD1	Os11g0143200	LOC_Os11g04710	cell elongation	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Cytological analyses further indicated the defective cell elongation in oscpd1 oscpd2 double mutant
OsCPD1	Os11g0143200	LOC_Os11g04710	 BR 	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 There is still no genetic evidence so far about the requirement of OsCPD1 and OsCPD2 in rice BR biosynthesis
OsCPD1	Os11g0143200	LOC_Os11g04710	 BR 	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD1	Os11g0143200	LOC_Os11g04710	 BR 	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Taken together, our results provide direct genetic evidence that OsCPD1 and OsCPD2 play essential and redundant roles in maintenance of plant architecture by modulating BR biosynthesis in rice
OsCPD1	Os11g0143200	LOC_Os11g04710	plant architecture	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Taken together, our results provide direct genetic evidence that OsCPD1 and OsCPD2 play essential and redundant roles in maintenance of plant architecture by modulating BR biosynthesis in rice
OsCPD1	Os11g0143200	LOC_Os11g04710	leaf angle	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD2	Os12g0139300	LOC_Os12g04480	leaf	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD2	Os12g0139300	LOC_Os12g04480	growth	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 The overall growth and development of oscpd1 and oscpd2 single knock-out mutants was indistinguishable from the wild-type, whereas, the oscpd1 oscpd2 double mutant displayed multiple and obvious BR-related defects
OsCPD2	Os12g0139300	LOC_Os12g04480	development	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 The overall growth and development of oscpd1 and oscpd2 single knock-out mutants was indistinguishable from the wild-type, whereas, the oscpd1 oscpd2 double mutant displayed multiple and obvious BR-related defects
OsCPD2	Os12g0139300	LOC_Os12g04480	grain	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD2	Os12g0139300	LOC_Os12g04480	grain size	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD2	Os12g0139300	LOC_Os12g04480	brassinosteroid	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.
OsCPD2	Os12g0139300	LOC_Os12g04480	BR	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 There is still no genetic evidence so far about the requirement of OsCPD1 and OsCPD2 in rice BR biosynthesis
OsCPD2	Os12g0139300	LOC_Os12g04480	BR	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD2	Os12g0139300	LOC_Os12g04480	BR	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Taken together, our results provide direct genetic evidence that OsCPD1 and OsCPD2 play essential and redundant roles in maintenance of plant architecture by modulating BR biosynthesis in rice
OsCPD2	Os12g0139300	LOC_Os12g04480	Brassinosteroid	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.
OsCPD2	Os12g0139300	LOC_Os12g04480	architecture	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Taken together, our results provide direct genetic evidence that OsCPD1 and OsCPD2 play essential and redundant roles in maintenance of plant architecture by modulating BR biosynthesis in rice
OsCPD2	Os12g0139300	LOC_Os12g04480	cell elongation	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Cytological analyses further indicated the defective cell elongation in oscpd1 oscpd2 double mutant
OsCPD2	Os12g0139300	LOC_Os12g04480	 BR 	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 There is still no genetic evidence so far about the requirement of OsCPD1 and OsCPD2 in rice BR biosynthesis
OsCPD2	Os12g0139300	LOC_Os12g04480	 BR 	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPD2	Os12g0139300	LOC_Os12g04480	 BR 	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Taken together, our results provide direct genetic evidence that OsCPD1 and OsCPD2 play essential and redundant roles in maintenance of plant architecture by modulating BR biosynthesis in rice
OsCPD2	Os12g0139300	LOC_Os12g04480	plant architecture	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Taken together, our results provide direct genetic evidence that OsCPD1 and OsCPD2 play essential and redundant roles in maintenance of plant architecture by modulating BR biosynthesis in rice
OsCPD2	Os12g0139300	LOC_Os12g04480	leaf angle	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	 Moreover, overexpression of OsCPD1 and OsCPD2 led to a typical BR enhanced phenotype, with enlarged leaf angle and increased grain size
OsCPK10	Os03g0788500	LOC_Os03g57450	disease	Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea	Collectively, our results indicate that rice OsCPK10 is a crucial regulator in plant immune responses, and that it may regulate disease resistance by activating both SA- and JA-dependent defense responses
OsCPK10	Os03g0788500	LOC_Os03g57450	disease resistance	Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea	Collectively, our results indicate that rice OsCPK10 is a crucial regulator in plant immune responses, and that it may regulate disease resistance by activating both SA- and JA-dependent defense responses
OsCPK10	Os03g0788500	LOC_Os03g57450	defense response	Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea	Collectively, our results indicate that rice OsCPK10 is a crucial regulator in plant immune responses, and that it may regulate disease resistance by activating both SA- and JA-dependent defense responses
OsCPK10	Os03g0788500	LOC_Os03g57450	defense	Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea	Collectively, our results indicate that rice OsCPK10 is a crucial regulator in plant immune responses, and that it may regulate disease resistance by activating both SA- and JA-dependent defense responses
OsCPK10	Os03g0788500	LOC_Os03g57450	blast	Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea	Similarly, transgenic rice plants containing constitutively active OsCPK10 exhibited enhanced resistance to blast fungus M
OsCPK10	Os03g0788500	LOC_Os03g57450	resistance	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK10	Os03g0788500	LOC_Os03g57450	drought	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK10	Os03g0788500	LOC_Os03g57450	tolerance	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK10	Os03g0788500	LOC_Os03g57450	tolerance	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	This work reports that the OsCPK10 isoform positively mediates tolerance to different stresses in rice plants by enhancing their antioxidant capacity and protecting them from reactive oxygen species (ROS) damage, with the uncontrolled generation of ROS being a common feature of these stresses
OsCPK10	Os03g0788500	LOC_Os03g57450	tolerance	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	OsCPK10 therefore appears to be a good molecular target to improve tolerance to abiotic stresses as well as to blast disease, which limit rice crop productivity
OsCPK10	Os03g0788500	LOC_Os03g57450	abiotic stress	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	OsCPK10 therefore appears to be a good molecular target to improve tolerance to abiotic stresses as well as to blast disease, which limit rice crop productivity
OsCPK10	Os03g0788500	LOC_Os03g57450	drought tolerance	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK10	Os03g0788500	LOC_Os03g57450	disease	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK10	Os03g0788500	LOC_Os03g57450	blast	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK10	Os03g0788500	LOC_Os03g57450	blast	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	OsCPK10 therefore appears to be a good molecular target to improve tolerance to abiotic stresses as well as to blast disease, which limit rice crop productivity
OsCPK10	Os03g0788500	LOC_Os03g57450	disease resistance	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK10	Os03g0788500	LOC_Os03g57450	plasma membrane	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Furthermore, we show by bimolecular complementation assays that OsCPK10 is a plasma membrane protein that physically interacts in vivo with catalase A
OsCPK10	Os03g0788500	LOC_Os03g57450	Kinase	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK10	Os03g0788500	LOC_Os03g57450	biotic stress	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	OsCPK10 therefore appears to be a good molecular target to improve tolerance to abiotic stresses as well as to blast disease, which limit rice crop productivity
OsCPK10	Os03g0788500	LOC_Os03g57450	blast disease	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK10	Os03g0788500	LOC_Os03g57450	blast disease	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	OsCPK10 therefore appears to be a good molecular target to improve tolerance to abiotic stresses as well as to blast disease, which limit rice crop productivity
OsCPK10	Os03g0788500	LOC_Os03g57450	reactive oxygen species	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	This work reports that the OsCPK10 isoform positively mediates tolerance to different stresses in rice plants by enhancing their antioxidant capacity and protecting them from reactive oxygen species (ROS) damage, with the uncontrolled generation of ROS being a common feature of these stresses
OsCPK10	Os03g0788500	LOC_Os03g57450	protein kinase	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.
OsCPK12	Os04g0560600	LOC_Os04g47300	blast resistance	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	Collectively, our results suggest that OsCPK12 functions in multiple signaling pathways, positively regulating salt tolerance and negatively modulating blast resistance
OsCPK12	Os04g0560600	LOC_Os04g47300	disease	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance
OsCPK12	Os04g0560600	LOC_Os04g47300	disease resistance	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance
OsCPK12	Os04g0560600	LOC_Os04g47300	blast disease	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance
OsCPK12	Os04g0560600	LOC_Os04g47300	biotic stress	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	We investigated the effects of overexpression and disruption of an Oryza sativa (rice) CDPK (OsCPK12) on the plant's response to abiotic and biotic stresses
OsCPK12	Os04g0560600	LOC_Os04g47300	endosperm	Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica)	Eight genes, OsCPK2, OsCPK11, OsCPK14, OsCPK22, OsCPK25, OsCPK26, OsCPK27 and OsCPK29 were found dominantly expressed in the panicle and the stamen, and five genes, OsCPK6, OsCPK7, OsCPK12, OsCPK23 and OsCPK31 were up-regulated in the endosperm stage
OsCPK12	Os04g0560600	LOC_Os04g47300	blast	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	We also observed that OsCPK12-OX seedlings had increased sensitivity to abscisic acid (ABA) and increased susceptibility to blast fungus, probably resulting from the repression of ROS production and/or the involvement of OsCPK12 in the ABA signaling pathway
OsCPK12	Os04g0560600	LOC_Os04g47300	blast	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	Collectively, our results suggest that OsCPK12 functions in multiple signaling pathways, positively regulating salt tolerance and negatively modulating blast resistance
OsCPK12	Os04g0560600	LOC_Os04g47300	blast	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance
OsCPK12	Os04g0560600	LOC_Os04g47300	salinity	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	Conversely, a retrotransposon (Tos17) insertion mutant, oscpk12, and plants transformed with an OsCPK12 RNA interference (RNAi) construct were more sensitive to high salinity than were WT plants
OsCPK12	Os04g0560600	LOC_Os04g47300	salt	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	OsCPK12-overexpressing (OsCPK12-OX) plants exhibited increased tolerance to salt stress
OsCPK12	Os04g0560600	LOC_Os04g47300	salt	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	These results suggest that OsCPK12 promotes tolerance to salt stress by reducing the accumulation of ROS
OsCPK12	Os04g0560600	LOC_Os04g47300	salt	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	Collectively, our results suggest that OsCPK12 functions in multiple signaling pathways, positively regulating salt tolerance and negatively modulating blast resistance
OsCPK12	Os04g0560600	LOC_Os04g47300	salt	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance
OsCPK12	Os04g0560600	LOC_Os04g47300	salt tolerance	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	Collectively, our results suggest that OsCPK12 functions in multiple signaling pathways, positively regulating salt tolerance and negatively modulating blast resistance
OsCPK12	Os04g0560600	LOC_Os04g47300	salt stress	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	OsCPK12-overexpressing (OsCPK12-OX) plants exhibited increased tolerance to salt stress
OsCPK12	Os04g0560600	LOC_Os04g47300	salt stress	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	These results suggest that OsCPK12 promotes tolerance to salt stress by reducing the accumulation of ROS
OsCPK12	Os04g0560600	LOC_Os04g47300	nitrogen	Overexpression of a calcium-dependent protein kinase gene enhances growth of rice under low-nitrogen conditions	We found that overexpression of OsCPK12 FL-cDNA, encoding a calcium-dependent protein kinase ( CDPK), conferred tolerance to low-nitrogen stress in rice
OsCPK12	Os04g0560600	LOC_Os04g47300	nitrogen	Overexpression of a calcium-dependent protein kinase gene enhances growth of rice under low-nitrogen conditions	After two weeks of low-nitrogen treatment, dry weights of shoots from OsCPK12-overexpressing plants were greater than those from control plants
OsCPK12	Os04g0560600	LOC_Os04g47300	nitrogen	Overexpression of a calcium-dependent protein kinase gene enhances growth of rice under low-nitrogen conditions	Furthermore, total nitrogen contents of OsCPK12-overexpressing plants were higher than those of the control plants
OsCPK12	Os04g0560600	LOC_Os04g47300	nitrogen	Overexpression of a calcium-dependent protein kinase gene enhances growth of rice under low-nitrogen conditions	Our findings suggest that OsCPK12 is involved in the signal transduction pathway(s) in the low-nitrogen stress response and may be useful in engineering crop plants with improved tolerance to low nitrogen levels
OsCPK12	Os04g0560600	LOC_Os04g47300	ABA	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	We also observed that OsCPK12-OX seedlings had increased sensitivity to abscisic acid (ABA) and increased susceptibility to blast fungus, probably resulting from the repression of ROS production and/or the involvement of OsCPK12 in the ABA signaling pathway
OsCPK12	Os04g0560600	LOC_Os04g47300	shoot	Overexpression of a calcium-dependent protein kinase gene enhances growth of rice under low-nitrogen conditions	After two weeks of low-nitrogen treatment, dry weights of shoots from OsCPK12-overexpressing plants were greater than those from control plants
OsCPK12	Os04g0560600	LOC_Os04g47300	panicle	Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica)	Eight genes, OsCPK2, OsCPK11, OsCPK14, OsCPK22, OsCPK25, OsCPK26, OsCPK27 and OsCPK29 were found dominantly expressed in the panicle and the stamen, and five genes, OsCPK6, OsCPK7, OsCPK12, OsCPK23 and OsCPK31 were up-regulated in the endosperm stage
OsCPK12	Os04g0560600	LOC_Os04g47300	stamen	Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica)	Eight genes, OsCPK2, OsCPK11, OsCPK14, OsCPK22, OsCPK25, OsCPK26, OsCPK27 and OsCPK29 were found dominantly expressed in the panicle and the stamen, and five genes, OsCPK6, OsCPK7, OsCPK12, OsCPK23 and OsCPK31 were up-regulated in the endosperm stage
OsCPK12	Os04g0560600	LOC_Os04g47300	seedling	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance	We also observed that OsCPK12-OX seedlings had increased sensitivity to abscisic acid (ABA) and increased susceptibility to blast fungus, probably resulting from the repression of ROS production and/or the involvement of OsCPK12 in the ABA signaling pathway
OsCPK12	Os04g0560600	LOC_Os04g47300	leaf	Impaired Function of the Calcium-Dependent Protein Kinase, OsCPK12, Leads to Early Senescence in Rice (Oryza sativa L.).	Our results demonstrate that the mutant of OsCPK12 triggers the premature leaf senescence; however, the overexpression of OsCPK12 may delay its growth period and provide the potentially positive effect on productivity in rice
OsCPK12	Os04g0560600	LOC_Os04g47300	leaf senescence	Impaired Function of the Calcium-Dependent Protein Kinase, OsCPK12, Leads to Early Senescence in Rice (Oryza sativa L.).	Our results demonstrate that the mutant of OsCPK12 triggers the premature leaf senescence; however, the overexpression of OsCPK12 may delay its growth period and provide the potentially positive effect on productivity in rice
OsCPK12	Os04g0560600	LOC_Os04g47300	senescence	Impaired Function of the Calcium-Dependent Protein Kinase, OsCPK12, Leads to Early Senescence in Rice (Oryza sativa L.).	We used CRISPR/Cas9 for targeted disruption of OsCPK12 in ZH8015 and all the mutants exhibited the premature senescence
OsCPK12	Os04g0560600	LOC_Os04g47300	growth	Impaired Function of the Calcium-Dependent Protein Kinase, OsCPK12, Leads to Early Senescence in Rice (Oryza sativa L.).	Our results demonstrate that the mutant of OsCPK12 triggers the premature leaf senescence; however, the overexpression of OsCPK12 may delay its growth period and provide the potentially positive effect on productivity in rice
OsCPK12	Os04g0560600	LOC_Os04g47300	Kinase	Impaired Function of the Calcium-Dependent Protein Kinase, OsCPK12, Leads to Early Senescence in Rice (Oryza sativa L.).	Sequencing analysis in target interval indicated there was an eight bases deletion mutation in OsCPK12 which encoded a calcium-dependent protein kinase
OsCPK12	Os04g0560600	LOC_Os04g47300	protein kinase	Impaired Function of the Calcium-Dependent Protein Kinase, OsCPK12, Leads to Early Senescence in Rice (Oryza sativa L.).	Sequencing analysis in target interval indicated there was an eight bases deletion mutation in OsCPK12 which encoded a calcium-dependent protein kinase
OsCPK17	Os07g0161600	LOC_Os07g06740	nitrogen	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	A comparative phosphoproteomic approach led to the identification of six potential in vivo OsCPK17 targets, which are associated with sugar and nitrogen metabolism, and with osmotic regulation
OsCPK17	Os07g0161600	LOC_Os07g06740	temperature	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Here we test the hypothesis that OsCPK17 plays a role in rice cold stress response by analyzing OsCPK17 knockout, silencing, and overexpressing rice lines under low temperature
OsCPK17	Os07g0161600	LOC_Os07g06740	tolerance	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Altered OsCPK17 gene expression compromises cold tolerance performance, without affecting the expression of key cold stress-inducible genes
OsCPK17	Os07g0161600	LOC_Os07g06740	cold tolerance	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Altered OsCPK17 gene expression compromises cold tolerance performance, without affecting the expression of key cold stress-inducible genes
OsCPK17	Os07g0161600	LOC_Os07g06740	cold stress	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	\Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.
OsCPK17	Os07g0161600	LOC_Os07g06740	cold stress	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Here we test the hypothesis that OsCPK17 plays a role in rice cold stress response by analyzing OsCPK17 knockout, silencing, and overexpressing rice lines under low temperature
OsCPK17	Os07g0161600	LOC_Os07g06740	cold stress	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Altered OsCPK17 gene expression compromises cold tolerance performance, without affecting the expression of key cold stress-inducible genes
OsCPK17	Os07g0161600	LOC_Os07g06740	cold stress	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Altogether, our data indicates that OsCPK17 is required for a proper cold stress response in rice, likely affecting the activity of membrane channels and sugar metabolism
OsCPK17	Os07g0161600	LOC_Os07g06740	stress	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	\Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.
OsCPK17	Os07g0161600	LOC_Os07g06740	stress	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Here we test the hypothesis that OsCPK17 plays a role in rice cold stress response by analyzing OsCPK17 knockout, silencing, and overexpressing rice lines under low temperature
OsCPK17	Os07g0161600	LOC_Os07g06740	stress	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Altogether, our data indicates that OsCPK17 is required for a proper cold stress response in rice, likely affecting the activity of membrane channels and sugar metabolism
OsCPK17	Os07g0161600	LOC_Os07g06740	plasma membrane	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	\Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.
OsCPK17	Os07g0161600	LOC_Os07g06740	sugar	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	A comparative phosphoproteomic approach led to the identification of six potential in vivo OsCPK17 targets, which are associated with sugar and nitrogen metabolism, and with osmotic regulation
OsCPK17	Os07g0161600	LOC_Os07g06740	sugar	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Altogether, our data indicates that OsCPK17 is required for a proper cold stress response in rice, likely affecting the activity of membrane channels and sugar metabolism
OsCPK17	Os07g0161600	LOC_Os07g06740	Kinase	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	\Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.
OsCPK17	Os07g0161600	LOC_Os07g06740	Kinase	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	To test direct interaction, in vitro kinase assays were performed, showing that the sucrose phosphate synthase OsSPS4, and the aquaporin OsPIP2;1/OsPIP2;6 are phosphorylated by OsCPK17 in a calcium-dependent manner
OsCPK17	Os07g0161600	LOC_Os07g06740	stress response	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	\Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.
OsCPK17	Os07g0161600	LOC_Os07g06740	stress response	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Here we test the hypothesis that OsCPK17 plays a role in rice cold stress response by analyzing OsCPK17 knockout, silencing, and overexpressing rice lines under low temperature
OsCPK17	Os07g0161600	LOC_Os07g06740	stress response	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	Altogether, our data indicates that OsCPK17 is required for a proper cold stress response in rice, likely affecting the activity of membrane channels and sugar metabolism
OsCPK17	Os07g0161600	LOC_Os07g06740	phosphate	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	\Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.
OsCPK17	Os07g0161600	LOC_Os07g06740	phosphate	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	To test direct interaction, in vitro kinase assays were performed, showing that the sucrose phosphate synthase OsSPS4, and the aquaporin OsPIP2;1/OsPIP2;6 are phosphorylated by OsCPK17 in a calcium-dependent manner
OsCPK17	Os07g0161600	LOC_Os07g06740	sucrose	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	\Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.
OsCPK17	Os07g0161600	LOC_Os07g06740	sucrose	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	To test direct interaction, in vitro kinase assays were performed, showing that the sucrose phosphate synthase OsSPS4, and the aquaporin OsPIP2;1/OsPIP2;6 are phosphorylated by OsCPK17 in a calcium-dependent manner
OsCPK17	Os07g0161600	LOC_Os07g06740	protein kinase	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.	\Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose phosphate synthase and is required for a proper cold stress response.
OsCPK17	Os07g0161600	LOC_Os07g06740	Kinase	The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.	The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.
OsCPK17	Os07g0161600	LOC_Os07g06740	protein kinase	The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.	The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.
OsCPK17	Os07g0161600	LOC_Os07g06740	calcium	The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.	Our analysis indicated that OsCPK17 activity depends on its structural rearrangement induced by calcium binding, and that the protein can be autophosphorylated
OsCPK18	Os07g0409900	LOC_Os07g22710	Kinase	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 We previously reported that rice CALCIUM-DEPENDENT PROTEIN KINASE 18 (OsCPK18) and MITOGEN-ACTIVATED PROTEIN KINASE 5 (OsMPK5) mutually phosphorylate each other and that OsCPK18 phosphorylates and positively regulates OsMPK5 to suppress rice immunity
OsCPK18	Os07g0409900	LOC_Os07g22710	Kinase	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 In vitro and in vivo kinase assays demonstrated that OsMPK5 phosphorylates C-terminal threonine (T505) and serine (S512) residues of OsCPK18 and OsCPK4, respectively
OsCPK18	Os07g0409900	LOC_Os07g22710	Kinase	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 The kinase activity of OsCPK18(T505D) , in which T505 was replaced by aspartic acid to mimic T505 phosphorylation, displayed less calcium sensitivity than that of wild-type OsCPK18
OsCPK18	Os07g0409900	LOC_Os07g22710	Kinase	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 Interestingly, editing the MAPK phosphorylation motif in OsCPK18 and its paralog OsCPK4, which deprives OsMPK5-mediated phosphorylation but retains calcium-dependent activation of kinase activity, simultaneously increases rice yields and immunity
OsCPK18	Os07g0409900	LOC_Os07g22710	kinase	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 We previously reported that rice CALCIUM-DEPENDENT PROTEIN KINASE 18 (OsCPK18) and MITOGEN-ACTIVATED PROTEIN KINASE 5 (OsMPK5) mutually phosphorylate each other and that OsCPK18 phosphorylates and positively regulates OsMPK5 to suppress rice immunity
OsCPK18	Os07g0409900	LOC_Os07g22710	kinase	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 In vitro and in vivo kinase assays demonstrated that OsMPK5 phosphorylates C-terminal threonine (T505) and serine (S512) residues of OsCPK18 and OsCPK4, respectively
OsCPK18	Os07g0409900	LOC_Os07g22710	kinase	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 The kinase activity of OsCPK18(T505D) , in which T505 was replaced by aspartic acid to mimic T505 phosphorylation, displayed less calcium sensitivity than that of wild-type OsCPK18
OsCPK18	Os07g0409900	LOC_Os07g22710	kinase	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 Interestingly, editing the MAPK phosphorylation motif in OsCPK18 and its paralog OsCPK4, which deprives OsMPK5-mediated phosphorylation but retains calcium-dependent activation of kinase activity, simultaneously increases rice yields and immunity
OsCPK18	Os07g0409900	LOC_Os07g22710	immunity	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 We previously reported that rice CALCIUM-DEPENDENT PROTEIN KINASE 18 (OsCPK18) and MITOGEN-ACTIVATED PROTEIN KINASE 5 (OsMPK5) mutually phosphorylate each other and that OsCPK18 phosphorylates and positively regulates OsMPK5 to suppress rice immunity
OsCPK18	Os07g0409900	LOC_Os07g22710	immunity	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 Interestingly, editing the MAPK phosphorylation motif in OsCPK18 and its paralog OsCPK4, which deprives OsMPK5-mediated phosphorylation but retains calcium-dependent activation of kinase activity, simultaneously increases rice yields and immunity
OsCPK18	Os07g0409900	LOC_Os07g22710	height	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 In this study, we found that OsCPK18 and its paralog OsCPK4 positively regulate plant height and yield-related traits
OsCPK18	Os07g0409900	LOC_Os07g22710	plant height	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 In this study, we found that OsCPK18 and its paralog OsCPK4 positively regulate plant height and yield-related traits
OsCPK18	Os07g0409900	LOC_Os07g22710	protein kinase	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 We previously reported that rice CALCIUM-DEPENDENT PROTEIN KINASE 18 (OsCPK18) and MITOGEN-ACTIVATED PROTEIN KINASE 5 (OsMPK5) mutually phosphorylate each other and that OsCPK18 phosphorylates and positively regulates OsMPK5 to suppress rice immunity
OsCPK18	Os07g0409900	LOC_Os07g22710	calcium	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	 The kinase activity of OsCPK18(T505D) , in which T505 was replaced by aspartic acid to mimic T505 phosphorylation, displayed less calcium sensitivity than that of wild-type OsCPK18
OsCPK21	Os08g0540400	LOC_Os08g42750	salt	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice	These results suggest that OsCPK21 is involved in the positive regulation of the signaling pathways that are involved in the response to ABA and salt stress
OsCPK21	Os08g0540400	LOC_Os08g42750	salt	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice
OsCPK21	Os08g0540400	LOC_Os08g42750	salinity	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice	The survival rate of the OsCPK21-FOX plants was higher than that of wild-type (WT) plants grown under high salinity conditions
OsCPK21	Os08g0540400	LOC_Os08g42750	salinity	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice	Several ABA- and high salinity-inducible genes were more highly expressed in the OsCPK21-FOX plants than in WT plants
OsCPK21	Os08g0540400	LOC_Os08g42750	salt tolerance	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice
OsCPK21	Os08g0540400	LOC_Os08g42750	seedling	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice	The inhibition of seedling growth by abscisic acid (ABA) treatment was greater in the OsCPK21-FOX plants than in WT plants
OsCPK21	Os08g0540400	LOC_Os08g42750	ABA	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice	These results suggest that OsCPK21 is involved in the positive regulation of the signaling pathways that are involved in the response to ABA and salt stress
OsCPK21	Os08g0540400	LOC_Os08g42750	growth	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice	The inhibition of seedling growth by abscisic acid (ABA) treatment was greater in the OsCPK21-FOX plants than in WT plants
OsCPK21	Os08g0540400	LOC_Os08g42750	salt stress	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice	These results suggest that OsCPK21 is involved in the positive regulation of the signaling pathways that are involved in the response to ABA and salt stress
OsCPK21	Os08g0540400	LOC_Os08g42750	salt	Calcium-dependent protein kinase 21 phosphorylates 14-3-3 proteins in response to ABA signaling and salt stress in rice.	These results suggest that OsCPK21 phosphorylates OsGF14e to facilitate the response to ABA and salt stress
OsCPK21	Os08g0540400	LOC_Os08g42750	ABA	Calcium-dependent protein kinase 21 phosphorylates 14-3-3 proteins in response to ABA signaling and salt stress in rice.	These results suggest that OsCPK21 phosphorylates OsGF14e to facilitate the response to ABA and salt stress
OsCPK21	Os08g0540400	LOC_Os08g42750	salt stress	Calcium-dependent protein kinase 21 phosphorylates 14-3-3 proteins in response to ABA signaling and salt stress in rice.	These results suggest that OsCPK21 phosphorylates OsGF14e to facilitate the response to ABA and salt stress
OsCPK21	Os08g0540400	LOC_Os08g42750	stress	Calcium-dependent protein kinase 21 phosphorylates 14-3-3 proteins in response to ABA signaling and salt stress in rice.	These results suggest that OsCPK21 phosphorylates OsGF14e to facilitate the response to ABA and salt stress
OsCPK21	Os08g0540400	LOC_Os08g42750	Kinase	Calcium-dependent protein kinase 21 phosphorylates 14-3-3 proteins in response to ABA signaling and salt stress in rice.	We used an in<U+00A0>vitro kinase assay and site-directed mutagenesis to verify that OsCPK21 phosphorylates OsGF14e at Tyr-138
OsCPK21	Os08g0540400	LOC_Os08g42750	ABA	Calcium-dependent protein kinase 21 phosphorylates 14-3-3 proteins in response to ABA signaling and salt stress in rice.	These results suggest that OsCPK21 phosphorylates OsGF14e to facilitate the response to ABA and salt stress
OsCPK21	Os08g0540400	LOC_Os08g42750	transcription factor	OsCPK21 is required for pollen late-stage development in rice.	Microarray analysis and qRT-PCR revealed that the transcription of OsCPK21 is coordinated with that of MIKC*-type MADS box transcription factors OsMADS62, OsMADS63, and OsMADS68 during rice anther development
OsCPK21	Os08g0540400	LOC_Os08g42750	pollen	OsCPK21 is required for pollen late-stage development in rice.	OsCPK21 is required for pollen late-stage development in rice.
OsCPK21	Os08g0540400	LOC_Os08g42750	pollen	OsCPK21 is required for pollen late-stage development in rice.	Here, we found that the knockdown of spikelet-specific OsCPK21 causes pollen abortion in OsCPK21-RNAi transgenic plants
OsCPK21	Os08g0540400	LOC_Os08g42750	anther	OsCPK21 is required for pollen late-stage development in rice.	Microarray analysis and qRT-PCR revealed that the transcription of OsCPK21 is coordinated with that of MIKC*-type MADS box transcription factors OsMADS62, OsMADS63, and OsMADS68 during rice anther development
OsCPK21	Os08g0540400	LOC_Os08g42750	development	OsCPK21 is required for pollen late-stage development in rice.	OsCPK21 is required for pollen late-stage development in rice.
OsCPK21	Os08g0540400	LOC_Os08g42750	development	OsCPK21 is required for pollen late-stage development in rice.	Microarray analysis and qRT-PCR revealed that the transcription of OsCPK21 is coordinated with that of MIKC*-type MADS box transcription factors OsMADS62, OsMADS63, and OsMADS68 during rice anther development
OsCPK21	Os08g0540400	LOC_Os08g42750	anther development	OsCPK21 is required for pollen late-stage development in rice.	Microarray analysis and qRT-PCR revealed that the transcription of OsCPK21 is coordinated with that of MIKC*-type MADS box transcription factors OsMADS62, OsMADS63, and OsMADS68 during rice anther development
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	tolerance	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 While OsCPK24 knockdown plants exhibited increased sensitivity to cold compared to wild type, OsCPK24-overexpressing plants exhibited increased cold tolerance
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	tolerance	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	cold tolerance	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 While OsCPK24 knockdown plants exhibited increased sensitivity to cold compared to wild type, OsCPK24-overexpressing plants exhibited increased cold tolerance
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	cold stress	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	cold stress	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 Plants overexpressing OsCPK24 exhibited increased accumulation of proline (an osmoprotectant) and glutathione (an antioxidant) and maintained a higher GSH/GSSG (reduced glutathione to oxidized glutathione) ratio during cold stress compared to wild type
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	cold stress	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 In addition to these effects in responses to cold stress, we found that the kinase activity of OsCPK24 varied under different calcium concentrations
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	cold stress	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	stress	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	stress	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 Plants overexpressing OsCPK24 exhibited increased accumulation of proline (an osmoprotectant) and glutathione (an antioxidant) and maintained a higher GSH/GSSG (reduced glutathione to oxidized glutathione) ratio during cold stress compared to wild type
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	stress	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	Kinase	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	Kinase	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 In addition to these effects in responses to cold stress, we found that the kinase activity of OsCPK24 varied under different calcium concentrations
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	stress tolerance	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	stress response	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	calcium	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 In addition to these effects in responses to cold stress, we found that the kinase activity of OsCPK24 varied under different calcium concentrations
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	calcium	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 Further, OsCPK24 phosphorylated OsGrx10, a glutathione-dependent thioltransferase, at rates modulated by changes in calcium concentration
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	calcium	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	 Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	 ABA 	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA 	  Conclusions: OsANN4 plays a crucial role in the ABA response, partially by modulating ROS production, mediating Ca2+ influx or interacting with OsCDPK24
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	ABA	OsANN4 modulates ROS production and mediates Ca 2+ influx in response to ABA 	  Conclusions: OsANN4 plays a crucial role in the ABA response, partially by modulating ROS production, mediating Ca2+ influx or interacting with OsCDPK24
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	development	Immune Mechanism of Ethylicin-Induced Resistance to Xanthomonas oryzae pv. oryzae in Rice.	 This study revealed the molecular mechanism of ET-induced resistance to Xoo in rice via OsCPK24, which provided a basis for the development of new bactericides based on the OsCPK24 protein
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	resistance	Immune Mechanism of Ethylicin-Induced Resistance to Xanthomonas oryzae pv. oryzae in Rice.	 In addition, the biological function of OsCPK24 as a mediator for rice resistance to Xoo was determined through the anti-Xoo phenotypic test of OsCPK24 transgenic rice and the affinity analysis of the OsCPK24 recombinant protein in vitro and ET
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	resistance	Immune Mechanism of Ethylicin-Induced Resistance to Xanthomonas oryzae pv. oryzae in Rice.	 This study revealed the molecular mechanism of ET-induced resistance to Xoo in rice via OsCPK24, which provided a basis for the development of new bactericides based on the OsCPK24 protein
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	xoo	Immune Mechanism of Ethylicin-Induced Resistance to Xanthomonas oryzae pv. oryzae in Rice.	 In addition, the biological function of OsCPK24 as a mediator for rice resistance to Xoo was determined through the anti-Xoo phenotypic test of OsCPK24 transgenic rice and the affinity analysis of the OsCPK24 recombinant protein in vitro and ET
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	xoo	Immune Mechanism of Ethylicin-Induced Resistance to Xanthomonas oryzae pv. oryzae in Rice.	 This study revealed the molecular mechanism of ET-induced resistance to Xoo in rice via OsCPK24, which provided a basis for the development of new bactericides based on the OsCPK24 protein
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	Xoo	Immune Mechanism of Ethylicin-Induced Resistance to Xanthomonas oryzae pv. oryzae in Rice.	 In addition, the biological function of OsCPK24 as a mediator for rice resistance to Xoo was determined through the anti-Xoo phenotypic test of OsCPK24 transgenic rice and the affinity analysis of the OsCPK24 recombinant protein in vitro and ET
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	Xoo	Immune Mechanism of Ethylicin-Induced Resistance to Xanthomonas oryzae pv. oryzae in Rice.	 This study revealed the molecular mechanism of ET-induced resistance to Xoo in rice via OsCPK24, which provided a basis for the development of new bactericides based on the OsCPK24 protein
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	 xoo 	Immune Mechanism of Ethylicin-Induced Resistance to Xanthomonas oryzae pv. oryzae in Rice.	 In addition, the biological function of OsCPK24 as a mediator for rice resistance to Xoo was determined through the anti-Xoo phenotypic test of OsCPK24 transgenic rice and the affinity analysis of the OsCPK24 recombinant protein in vitro and ET
OsCPK24|OsCDPK14|OsCDPK24	Os11g0171500	LOC_Os11g07040	 xoo 	Immune Mechanism of Ethylicin-Induced Resistance to Xanthomonas oryzae pv. oryzae in Rice.	 This study revealed the molecular mechanism of ET-induced resistance to Xoo in rice via OsCPK24, which provided a basis for the development of new bactericides based on the OsCPK24 protein
OsCPK25	Os11g0136600	LOC_Os11g04170	pollen	OIP30, a RuvB-like DNA helicase 2, is a potential substrate for the pollen-predominant OsCPK25/26 in rice	Using yeast two-hybrid screening, we isolated OsCPK25/26-interacting protein 30 (OIP30), which is also predominantly expressed in pollen
OsCPK25	Os11g0136600	LOC_Os11g04170	pollen	OIP30, a RuvB-like DNA helicase 2, is a potential substrate for the pollen-predominant OsCPK25/26 in rice	OIP30 may be the potential downstream substrate for OsCPK25/26 in pollen
OsCPK25	Os11g0136600	LOC_Os11g04170	pollen	OIP30, a RuvB-like DNA helicase 2, is a potential substrate for the pollen-predominant OsCPK25/26 in rice	OIP30, a RuvB-like DNA helicase 2, is a potential substrate for the pollen-predominant OsCPK25/26 in rice
OsCPK26	Os12g0133500	LOC_Os12g03970	pollen	OIP30, a RuvB-like DNA helicase 2, is a potential substrate for the pollen-predominant OsCPK25/26 in rice.	Role of OIP30 and OsCPK26 in mature pollen
OsCPK31	None	None	grain	Constitutive expression and silencing of a novel seed specific calcium dependent protein kinase gene in rice reveals its role in grain filling.	It will be interesting to further decipher the role of OsCPK31 in biological pathways associated with distribution of photosynthetic assimilates during grain filling stage
OsCPK31	None	None	grain filling	Constitutive expression and silencing of a novel seed specific calcium dependent  protein kinase gene in rice reveals its role in grain filling	Constitutive expression and silencing of a novel seed specific calcium dependent  protein kinase gene in rice reveals its role in grain filling
OsCPK4	Os02g0126400	LOC_Os02g03410	oxidative stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	A significant number of genes involved in lipid metabolism and protection against oxidative stress appear to be up-regulated by OsCPK4 in roots of overexpressor plants
OsCPK4	Os02g0126400	LOC_Os02g03410	oxidative	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	A significant number of genes involved in lipid metabolism and protection against oxidative stress appear to be up-regulated by OsCPK4 in roots of overexpressor plants
OsCPK4	Os02g0126400	LOC_Os02g03410	oxidative	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Taken together, our data show that OsCPK4 functions as a positive regulator of the salt and drought stress responses in rice via the protection of cellular membranes from stress-induced oxidative damage
OsCPK4	Os02g0126400	LOC_Os02g03410	abiotic stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Meanwhile, OsCPK4 overexpression has no effect on the expression of well-characterized abiotic stress-associated transcriptional regulatory networks (i
OsCPK4	Os02g0126400	LOC_Os02g03410	drought	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Overexpression of OsCPK4 in rice plants significantly enhances tolerance to salt and drought stress
OsCPK4	Os02g0126400	LOC_Os02g03410	drought	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Compared with control plants, OsCPK4 overexpressor plants exhibit stronger water-holding capability and reduced levels of membrane lipid peroxidation and electrolyte leakage under drought or salt stress conditions
OsCPK4	Os02g0126400	LOC_Os02g03410	drought	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Taken together, our data show that OsCPK4 functions as a positive regulator of the salt and drought stress responses in rice via the protection of cellular membranes from stress-induced oxidative damage
OsCPK4	Os02g0126400	LOC_Os02g03410	salt	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Overexpression of OsCPK4 in rice plants significantly enhances tolerance to salt and drought stress
OsCPK4	Os02g0126400	LOC_Os02g03410	salt	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Compared with control plants, OsCPK4 overexpressor plants exhibit stronger water-holding capability and reduced levels of membrane lipid peroxidation and electrolyte leakage under drought or salt stress conditions
OsCPK4	Os02g0126400	LOC_Os02g03410	salt	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Taken together, our data show that OsCPK4 functions as a positive regulator of the salt and drought stress responses in rice via the protection of cellular membranes from stress-induced oxidative damage
OsCPK4	Os02g0126400	LOC_Os02g03410	salt stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Compared with control plants, OsCPK4 overexpressor plants exhibit stronger water-holding capability and reduced levels of membrane lipid peroxidation and electrolyte leakage under drought or salt stress conditions
OsCPK4	Os02g0126400	LOC_Os02g03410	tolerance	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Overexpression of OsCPK4 in rice plants significantly enhances tolerance to salt and drought stress
OsCPK4	Os02g0126400	LOC_Os02g03410	stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Overexpression of OsCPK4 in rice plants significantly enhances tolerance to salt and drought stress
OsCPK4	Os02g0126400	LOC_Os02g03410	stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Compared with control plants, OsCPK4 overexpressor plants exhibit stronger water-holding capability and reduced levels of membrane lipid peroxidation and electrolyte leakage under drought or salt stress conditions
OsCPK4	Os02g0126400	LOC_Os02g03410	stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	A significant number of genes involved in lipid metabolism and protection against oxidative stress appear to be up-regulated by OsCPK4 in roots of overexpressor plants
OsCPK4	Os02g0126400	LOC_Os02g03410	stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Taken together, our data show that OsCPK4 functions as a positive regulator of the salt and drought stress responses in rice via the protection of cellular membranes from stress-induced oxidative damage
OsCPK4	Os02g0126400	LOC_Os02g03410	plasma membrane	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Moreover, a plasma membrane localization of OsCPK4 was observed by transient expression assays of green fluorescent protein-tagged OsCPK4 in onion (Allium cepa) epidermal cells
OsCPK4	Os02g0126400	LOC_Os02g03410	phytohormone	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Here, we report that OsCPK4 expression is induced by high salinity, drought, and the phytohormone abscisic acid
OsCPK4	Os02g0126400	LOC_Os02g03410	drought stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Overexpression of OsCPK4 in rice plants significantly enhances tolerance to salt and drought stress
OsCPK4	Os02g0126400	LOC_Os02g03410	drought stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Taken together, our data show that OsCPK4 functions as a positive regulator of the salt and drought stress responses in rice via the protection of cellular membranes from stress-induced oxidative damage
OsCPK4	Os02g0126400	LOC_Os02g03410	drought stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Taken together, our data show that OsCPK4 functions as a positive regulator of the salt and drought stress responses in rice via the protection of cellular membranes from stress-induced oxidative damage
OsCPK4	Os02g0126400	LOC_Os02g03410	abscisic acid	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Here, we report that OsCPK4 expression is induced by high salinity, drought, and the phytohormone abscisic acid
OsCPK4	Os02g0126400	LOC_Os02g03410	drought stress response	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Taken together, our data show that OsCPK4 functions as a positive regulator of the salt and drought stress responses in rice via the protection of cellular membranes from stress-induced oxidative damage
OsCPK4	Os02g0126400	LOC_Os02g03410	stress response	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Taken together, our data show that OsCPK4 functions as a positive regulator of the salt and drought stress responses in rice via the protection of cellular membranes from stress-induced oxidative damage
OsCPK4	Os02g0126400	LOC_Os02g03410	biotic stress	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Meanwhile, OsCPK4 overexpression has no effect on the expression of well-characterized abiotic stress-associated transcriptional regulatory networks (i
OsCPK4	Os02g0126400	LOC_Os02g03410	seedlings	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Also, salt-treated OsCPK4 seedlings accumulate less Na(+) in their roots
OsCPK4	Os02g0126400	LOC_Os02g03410	resistance	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.
OsCPK4	Os02g0126400	LOC_Os02g03410	resistance	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	It shows that overexpression of OsCPK4 gene in rice plants enhances resistance to blast disease by preventing fungal penetration
OsCPK4	Os02g0126400	LOC_Os02g03410	resistance	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Altogether, our findings indicate that OsCPK4 is a potential molecular target to improve not only abiotic stress tolerance, but also blast disease resistance of rice crops
OsCPK4	Os02g0126400	LOC_Os02g03410	drought	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Given that OsCPK4 overexpression was known to confer also salt and drought tolerance in rice, the results reported in this article demonstrate that OsCPK4 acts as a convergence component that positively modulates both biotic and abiotic signalling pathways
OsCPK4	Os02g0126400	LOC_Os02g03410	salt	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Given that OsCPK4 overexpression was known to confer also salt and drought tolerance in rice, the results reported in this article demonstrate that OsCPK4 acts as a convergence component that positively modulates both biotic and abiotic signalling pathways
OsCPK4	Os02g0126400	LOC_Os02g03410	tolerance	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Given that OsCPK4 overexpression was known to confer also salt and drought tolerance in rice, the results reported in this article demonstrate that OsCPK4 acts as a convergence component that positively modulates both biotic and abiotic signalling pathways
OsCPK4	Os02g0126400	LOC_Os02g03410	yield	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	OsCPK4 overexpression leads also to constitutive increased content of the glycosylated salicylic acid hormone in leaves without compromising rice yield
OsCPK4	Os02g0126400	LOC_Os02g03410	abiotic stress	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Altogether, our findings indicate that OsCPK4 is a potential molecular target to improve not only abiotic stress tolerance, but also blast disease resistance of rice crops
OsCPK4	Os02g0126400	LOC_Os02g03410	drought tolerance	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Given that OsCPK4 overexpression was known to confer also salt and drought tolerance in rice, the results reported in this article demonstrate that OsCPK4 acts as a convergence component that positively modulates both biotic and abiotic signalling pathways
OsCPK4	Os02g0126400	LOC_Os02g03410	disease	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.
OsCPK4	Os02g0126400	LOC_Os02g03410	disease	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	It shows that overexpression of OsCPK4 gene in rice plants enhances resistance to blast disease by preventing fungal penetration
OsCPK4	Os02g0126400	LOC_Os02g03410	disease	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Altogether, our findings indicate that OsCPK4 is a potential molecular target to improve not only abiotic stress tolerance, but also blast disease resistance of rice crops
OsCPK4	Os02g0126400	LOC_Os02g03410	salicylic acid	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	OsCPK4 overexpression leads also to constitutive increased content of the glycosylated salicylic acid hormone in leaves without compromising rice yield
OsCPK4	Os02g0126400	LOC_Os02g03410	blast	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.
OsCPK4	Os02g0126400	LOC_Os02g03410	blast	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	In this work, the isoform OsCPK4 of the rice calcium-dependent protein kinase family is reported as a regulator of rice immunity to blast fungal infection
OsCPK4	Os02g0126400	LOC_Os02g03410	blast	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	It shows that overexpression of OsCPK4 gene in rice plants enhances resistance to blast disease by preventing fungal penetration
OsCPK4	Os02g0126400	LOC_Os02g03410	blast	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Altogether, our findings indicate that OsCPK4 is a potential molecular target to improve not only abiotic stress tolerance, but also blast disease resistance of rice crops
OsCPK4	Os02g0126400	LOC_Os02g03410	disease resistance	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.
OsCPK4	Os02g0126400	LOC_Os02g03410	disease resistance	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Altogether, our findings indicate that OsCPK4 is a potential molecular target to improve not only abiotic stress tolerance, but also blast disease resistance of rice crops
OsCPK4	Os02g0126400	LOC_Os02g03410	stress	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Altogether, our findings indicate that OsCPK4 is a potential molecular target to improve not only abiotic stress tolerance, but also blast disease resistance of rice crops
OsCPK4	Os02g0126400	LOC_Os02g03410	immunity	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	In this work, the isoform OsCPK4 of the rice calcium-dependent protein kinase family is reported as a regulator of rice immunity to blast fungal infection
OsCPK4	Os02g0126400	LOC_Os02g03410	biotic stress	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Altogether, our findings indicate that OsCPK4 is a potential molecular target to improve not only abiotic stress tolerance, but also blast disease resistance of rice crops
OsCPK4	Os02g0126400	LOC_Os02g03410	blast disease	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.
OsCPK4	Os02g0126400	LOC_Os02g03410	blast disease	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	It shows that overexpression of OsCPK4 gene in rice plants enhances resistance to blast disease by preventing fungal penetration
OsCPK4	Os02g0126400	LOC_Os02g03410	blast disease	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Altogether, our findings indicate that OsCPK4 is a potential molecular target to improve not only abiotic stress tolerance, but also blast disease resistance of rice crops
OsCPK4	Os02g0126400	LOC_Os02g03410	stress tolerance	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Altogether, our findings indicate that OsCPK4 is a potential molecular target to improve not only abiotic stress tolerance, but also blast disease resistance of rice crops
OsCPK4	Os02g0126400	LOC_Os02g03410	Kinase	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.
OsCPK4	Os02g0126400	LOC_Os02g03410	Kinase	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	In this work, the isoform OsCPK4 of the rice calcium-dependent protein kinase family is reported as a regulator of rice immunity to blast fungal infection
OsCPK4	Os02g0126400	LOC_Os02g03410	reactive oxygen species	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	The constitutive accumulation of OsCPK4 protein prepares rice plants for a rapid and potentiated defence response, including the production of reactive oxygen species, callose deposition and defence gene expression
OsCPK4	Os02g0126400	LOC_Os02g03410	defence	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	The constitutive accumulation of OsCPK4 protein prepares rice plants for a rapid and potentiated defence response, including the production of reactive oxygen species, callose deposition and defence gene expression
OsCPK4	Os02g0126400	LOC_Os02g03410	protein kinase	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.
OsCPK4	Os02g0126400	LOC_Os02g03410	protein kinase	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	In this work, the isoform OsCPK4 of the rice calcium-dependent protein kinase family is reported as a regulator of rice immunity to blast fungal infection
OsCPK4	Os02g0126400	LOC_Os02g03410	defence response	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	The constitutive accumulation of OsCPK4 protein prepares rice plants for a rapid and potentiated defence response, including the production of reactive oxygen species, callose deposition and defence gene expression
OsCPK4	Os02g0126400	LOC_Os02g03410	growth	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The calcium-dependent protein kinase OsCPK4 has been demonstrated to play important roles in salt and drought tolerance, plant growth and development in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	development	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The calcium-dependent protein kinase OsCPK4 has been demonstrated to play important roles in salt and drought tolerance, plant growth and development in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	drought	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The calcium-dependent protein kinase OsCPK4 has been demonstrated to play important roles in salt and drought tolerance, plant growth and development in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	salt	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The calcium-dependent protein kinase OsCPK4 has been demonstrated to play important roles in salt and drought tolerance, plant growth and development in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	oxidative	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	In this study, we demonstrated that the generation of oxidative burst and pathogenesis-related gene expression triggered by microbe-associated molecular patterns (MAMPs) were significantly enhanced in the oscpk4 mutants
OsCPK4	Os02g0126400	LOC_Os02g03410	drought tolerance	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The calcium-dependent protein kinase OsCPK4 has been demonstrated to play important roles in salt and drought tolerance, plant growth and development in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	blast	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	These mutant lines are more resistant to bacterial blight and fungal blast diseases than the wild-type plants, indicating that OsCPK4 negatively regulates innate immunity in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	immunity	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	However, little is known on molecular mechanisms underlying OsCPK4 function in rice immunity
OsCPK4	Os02g0126400	LOC_Os02g03410	immunity	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	These mutant lines are more resistant to bacterial blight and fungal blast diseases than the wild-type plants, indicating that OsCPK4 negatively regulates innate immunity in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	immunity	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	These findings indicate that the kinase-inactive OsCPK4 promotes OsRLCK176 degradation and restricts plant defenses; whereas the activation of OsCPK4-OsRLCK176 phosphorylation circuit invalidates the OsRLCK176 degradation machinery and thus enhancing plant immunity
OsCPK4	Os02g0126400	LOC_Os02g03410	innate immunity	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.
OsCPK4	Os02g0126400	LOC_Os02g03410	innate immunity	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	These mutant lines are more resistant to bacterial blight and fungal blast diseases than the wild-type plants, indicating that OsCPK4 negatively regulates innate immunity in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	blight	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	These mutant lines are more resistant to bacterial blight and fungal blast diseases than the wild-type plants, indicating that OsCPK4 negatively regulates innate immunity in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	Kinase	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.
OsCPK4	Os02g0126400	LOC_Os02g03410	Kinase	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The calcium-dependent protein kinase OsCPK4 has been demonstrated to play important roles in salt and drought tolerance, plant growth and development in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	Kinase	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	OsCPK4 was further identified to interact with a receptor-like cytoplasmic kinase OsRLCK176
OsCPK4	Os02g0126400	LOC_Os02g03410	Kinase	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	Moreover, the kinase activity and phosphorylation of OsCPK4 and OsRLCK176 contribute to the stability of OsRLCK176
OsCPK4	Os02g0126400	LOC_Os02g03410	resistant	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	These mutant lines are more resistant to bacterial blight and fungal blast diseases than the wild-type plants, indicating that OsCPK4 negatively regulates innate immunity in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	blast disease	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	These mutant lines are more resistant to bacterial blight and fungal blast diseases than the wild-type plants, indicating that OsCPK4 negatively regulates innate immunity in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	bacterial blight	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	These mutant lines are more resistant to bacterial blight and fungal blast diseases than the wild-type plants, indicating that OsCPK4 negatively regulates innate immunity in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	plant growth	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The calcium-dependent protein kinase OsCPK4 has been demonstrated to play important roles in salt and drought tolerance, plant growth and development in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	protein kinase	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	The calcium-dependent protein kinase OsCPK4 has been demonstrated to play important roles in salt and drought tolerance, plant growth and development in rice
OsCPK4	Os02g0126400	LOC_Os02g03410	fungal blast	The kinase OsCPK4 regulates a buffering mechanism that fine-tunes innate immunity.	These mutant lines are more resistant to bacterial blight and fungal blast diseases than the wild-type plants, indicating that OsCPK4 negatively regulates innate immunity in rice
OsCPK9	Os03g0688300	LOC_Os03g48270	spikelet	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
OsCPK9	Os03g0688300	LOC_Os03g48270	spikelet	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	The results of OsCPK9 overexpression (OsCPK9-OX) and OsCPK9 RNA interference (OsCPK9-RNAi) analyses revealed that OsCPK9 plays a positive role in drought stress tolerance and spikelet fertility
OsCPK9	Os03g0688300	LOC_Os03g48270	spikelet	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Our results demonstrated that OsCPK9 is a positive regulator of abiotic stress tolerance, spikelet fertility, and ABA sensitivity
OsCPK9	Os03g0688300	LOC_Os03g48270	drought	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
OsCPK9	Os03g0688300	LOC_Os03g48270	drought	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	The results of OsCPK9 overexpression (OsCPK9-OX) and OsCPK9 RNA interference (OsCPK9-RNAi) analyses revealed that OsCPK9 plays a positive role in drought stress tolerance and spikelet fertility
OsCPK9	Os03g0688300	LOC_Os03g48270	drought	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Physiological analyses revealed that OsCPK9 improves drought stress tolerance by enhancing stomatal closure and by improving the osmotic adjustment ability of the plant
OsCPK9	Os03g0688300	LOC_Os03g48270	tolerance	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
OsCPK9	Os03g0688300	LOC_Os03g48270	tolerance	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	The results of OsCPK9 overexpression (OsCPK9-OX) and OsCPK9 RNA interference (OsCPK9-RNAi) analyses revealed that OsCPK9 plays a positive role in drought stress tolerance and spikelet fertility
OsCPK9	Os03g0688300	LOC_Os03g48270	tolerance	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Physiological analyses revealed that OsCPK9 improves drought stress tolerance by enhancing stomatal closure and by improving the osmotic adjustment ability of the plant
OsCPK9	Os03g0688300	LOC_Os03g48270	abiotic stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Our results demonstrated that OsCPK9 is a positive regulator of abiotic stress tolerance, spikelet fertility, and ABA sensitivity
OsCPK9	Os03g0688300	LOC_Os03g48270	ABA	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Our results demonstrated that OsCPK9 is a positive regulator of abiotic stress tolerance, spikelet fertility, and ABA sensitivity
OsCPK9	Os03g0688300	LOC_Os03g48270	stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
OsCPK9	Os03g0688300	LOC_Os03g48270	stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	The results of OsCPK9 overexpression (OsCPK9-OX) and OsCPK9 RNA interference (OsCPK9-RNAi) analyses revealed that OsCPK9 plays a positive role in drought stress tolerance and spikelet fertility
OsCPK9	Os03g0688300	LOC_Os03g48270	stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Physiological analyses revealed that OsCPK9 improves drought stress tolerance by enhancing stomatal closure and by improving the osmotic adjustment ability of the plant
OsCPK9	Os03g0688300	LOC_Os03g48270	stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Our results demonstrated that OsCPK9 is a positive regulator of abiotic stress tolerance, spikelet fertility, and ABA sensitivity
OsCPK9	Os03g0688300	LOC_Os03g48270	fertility	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	The results of OsCPK9 overexpression (OsCPK9-OX) and OsCPK9 RNA interference (OsCPK9-RNAi) analyses revealed that OsCPK9 plays a positive role in drought stress tolerance and spikelet fertility
OsCPK9	Os03g0688300	LOC_Os03g48270	stomatal	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Physiological analyses revealed that OsCPK9 improves drought stress tolerance by enhancing stomatal closure and by improving the osmotic adjustment ability of the plant
OsCPK9	Os03g0688300	LOC_Os03g48270	biotic stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Our results demonstrated that OsCPK9 is a positive regulator of abiotic stress tolerance, spikelet fertility, and ABA sensitivity
OsCPK9	Os03g0688300	LOC_Os03g48270	drought stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
OsCPK9	Os03g0688300	LOC_Os03g48270	drought stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	The results of OsCPK9 overexpression (OsCPK9-OX) and OsCPK9 RNA interference (OsCPK9-RNAi) analyses revealed that OsCPK9 plays a positive role in drought stress tolerance and spikelet fertility
OsCPK9	Os03g0688300	LOC_Os03g48270	drought stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Physiological analyses revealed that OsCPK9 improves drought stress tolerance by enhancing stomatal closure and by improving the osmotic adjustment ability of the plant
OsCPK9	Os03g0688300	LOC_Os03g48270	drought stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
OsCPK9	Os03g0688300	LOC_Os03g48270	drought stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	The results of OsCPK9 overexpression (OsCPK9-OX) and OsCPK9 RNA interference (OsCPK9-RNAi) analyses revealed that OsCPK9 plays a positive role in drought stress tolerance and spikelet fertility
OsCPK9	Os03g0688300	LOC_Os03g48270	drought stress	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Physiological analyses revealed that OsCPK9 improves drought stress tolerance by enhancing stomatal closure and by improving the osmotic adjustment ability of the plant
OsCPK9	Os03g0688300	LOC_Os03g48270	ABA	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Our results demonstrated that OsCPK9 is a positive regulator of abiotic stress tolerance, spikelet fertility, and ABA sensitivity
OsCPK9	Os03g0688300	LOC_Os03g48270	abscisic acid	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	OsCPK9 transcription was induced by abscisic acid (ABA), PEG6000, and NaCl treatments
OsCPK9	Os03g0688300	LOC_Os03g48270	Kinase	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
OsCPK9	Os03g0688300	LOC_Os03g48270	stress tolerance	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
OsCPK9	Os03g0688300	LOC_Os03g48270	stress tolerance	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	The results of OsCPK9 overexpression (OsCPK9-OX) and OsCPK9 RNA interference (OsCPK9-RNAi) analyses revealed that OsCPK9 plays a positive role in drought stress tolerance and spikelet fertility
OsCPK9	Os03g0688300	LOC_Os03g48270	stress tolerance	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Physiological analyses revealed that OsCPK9 improves drought stress tolerance by enhancing stomatal closure and by improving the osmotic adjustment ability of the plant
OsCPK9	Os03g0688300	LOC_Os03g48270	stress tolerance	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	Our results demonstrated that OsCPK9 is a positive regulator of abiotic stress tolerance, spikelet fertility, and ABA sensitivity
OsCPK9	Os03g0688300	LOC_Os03g48270	protein kinase	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	dormancy	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	shattering	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	On the basis of the BTS value and morphology of the abscission layer of F(1) plants and segregation data in F(2) populations, it was concluded that the easy shattering of Hsh was controlled by the single recessive gene sh-h
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	shattering	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	pericarp	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	domestication	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	seed	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	seed	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	shattering	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	shattering	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice	We previously identified a recessive shattering locus, sh-h, from the rice shattering mutant line Hsh that carries an enhanced abscission layer
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	shattering	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice	Two transferred DNA (T-DNA) insertion mutants and one point mutant exhibited the enhanced shattering phenotype, confirming that LOC_Os07g10690 is indeed the sh-h gene
OsCPL1|sh-h	Os07g0207700	LOC_Os07g10690	panicle	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice	These results demonstrate that OsCPL1 represses differentiation of the abscission layer during panicle development
OsCPL3	Os11g0521900	LOC_Os11g31890	leaf	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 Loss of OsCPL3 function resulted in higher OsGSK2 abundance and lower OsBZR1 levels, leading to decreased BR responsiveness and alterations in plant morphology including semi-dwarfism, leaf erectness and grain size, which are of fundamental importance to crop productivity
OsCPL3	Os11g0521900	LOC_Os11g31890	Kinase	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 OsCPL3 localized to the nucleus, where it dephosphorylated OsGSK2 at the Ser-222 and Thr-284 residues to modulate its protein turnover and kinase activity, in turn affecting the degradation of BRASSINAZOLE-RESISTANT 1 (BZR1) and BR signaling
OsCPL3	Os11g0521900	LOC_Os11g31890	grain	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 Loss of OsCPL3 function resulted in higher OsGSK2 abundance and lower OsBZR1 levels, leading to decreased BR responsiveness and alterations in plant morphology including semi-dwarfism, leaf erectness and grain size, which are of fundamental importance to crop productivity
OsCPL3	Os11g0521900	LOC_Os11g31890	grain size	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 Loss of OsCPL3 function resulted in higher OsGSK2 abundance and lower OsBZR1 levels, leading to decreased BR responsiveness and alterations in plant morphology including semi-dwarfism, leaf erectness and grain size, which are of fundamental importance to crop productivity
OsCPL3	Os11g0521900	LOC_Os11g31890	brassinosteroid	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.
OsCPL3	Os11g0521900	LOC_Os11g31890	BR	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 OsCPL3 expression was widely detected in various tissues and organs including roots, leaves and lamina joints, and was induced by exogenous BR treatment
OsCPL3	Os11g0521900	LOC_Os11g31890	BR	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 OsCPL3 localized to the nucleus, where it dephosphorylated OsGSK2 at the Ser-222 and Thr-284 residues to modulate its protein turnover and kinase activity, in turn affecting the degradation of BRASSINAZOLE-RESISTANT 1 (BZR1) and BR signaling
OsCPL3	Os11g0521900	LOC_Os11g31890	BR	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 Loss of OsCPL3 function resulted in higher OsGSK2 abundance and lower OsBZR1 levels, leading to decreased BR responsiveness and alterations in plant morphology including semi-dwarfism, leaf erectness and grain size, which are of fundamental importance to crop productivity
OsCPL3	Os11g0521900	LOC_Os11g31890	BR	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 These results reveal a previously unrecognized role for OsCPL3 and add another layer of complexity to the tightly controlled BR signaling pathway in plants
OsCPL3	Os11g0521900	LOC_Os11g31890	Brassinosteroid	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.
OsCPL3	Os11g0521900	LOC_Os11g31890	BR signaling	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 OsCPL3 localized to the nucleus, where it dephosphorylated OsGSK2 at the Ser-222 and Thr-284 residues to modulate its protein turnover and kinase activity, in turn affecting the degradation of BRASSINAZOLE-RESISTANT 1 (BZR1) and BR signaling
OsCPL3	Os11g0521900	LOC_Os11g31890	BR signaling	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 These results reveal a previously unrecognized role for OsCPL3 and add another layer of complexity to the tightly controlled BR signaling pathway in plants
OsCPL3	Os11g0521900	LOC_Os11g31890	lamina	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 OsCPL3 expression was widely detected in various tissues and organs including roots, leaves and lamina joints, and was induced by exogenous BR treatment
OsCPL3	Os11g0521900	LOC_Os11g31890	kinase	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 OsCPL3 localized to the nucleus, where it dephosphorylated OsGSK2 at the Ser-222 and Thr-284 residues to modulate its protein turnover and kinase activity, in turn affecting the degradation of BRASSINAZOLE-RESISTANT 1 (BZR1) and BR signaling
OsCPL3	Os11g0521900	LOC_Os11g31890	Brassinosteroid Signaling	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.
OsCPL3	Os11g0521900	LOC_Os11g31890	 BR 	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 OsCPL3 expression was widely detected in various tissues and organs including roots, leaves and lamina joints, and was induced by exogenous BR treatment
OsCPL3	Os11g0521900	LOC_Os11g31890	 BR 	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 OsCPL3 localized to the nucleus, where it dephosphorylated OsGSK2 at the Ser-222 and Thr-284 residues to modulate its protein turnover and kinase activity, in turn affecting the degradation of BRASSINAZOLE-RESISTANT 1 (BZR1) and BR signaling
OsCPL3	Os11g0521900	LOC_Os11g31890	 BR 	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 Loss of OsCPL3 function resulted in higher OsGSK2 abundance and lower OsBZR1 levels, leading to decreased BR responsiveness and alterations in plant morphology including semi-dwarfism, leaf erectness and grain size, which are of fundamental importance to crop productivity
OsCPL3	Os11g0521900	LOC_Os11g31890	 BR 	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 These results reveal a previously unrecognized role for OsCPL3 and add another layer of complexity to the tightly controlled BR signaling pathway in plants
OsCPL3	Os11g0521900	LOC_Os11g31890	leaf erectness	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 Loss of OsCPL3 function resulted in higher OsGSK2 abundance and lower OsBZR1 levels, leading to decreased BR responsiveness and alterations in plant morphology including semi-dwarfism, leaf erectness and grain size, which are of fundamental importance to crop productivity
OsCPL3	Os11g0521900	LOC_Os11g31890	lamina joint	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	 OsCPL3 expression was widely detected in various tissues and organs including roots, leaves and lamina joints, and was induced by exogenous BR treatment
OsCpn601	Os06g0114000	LOC_Os06g02380	leaf	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).	The OsCpn601 mutant displayed a striking albino leaf phenotype and was seedling lethal
OsCpn601	Os06g0114000	LOC_Os06g02380	chloroplast	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).
OsCpn601	Os06g0114000	LOC_Os06g02380	chloroplast	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).	In addition, OsCpn601 was located in the chloroplast and OsCpn601 is constitutively expressed in various tissues particularly in the green tissues
OsCpn601	Os06g0114000	LOC_Os06g02380	chloroplast	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).	These results indicate that OsCpn601 is essential for chloroplast development in rice
OsCpn601	Os06g0114000	LOC_Os06g02380	development	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).
OsCpn601	Os06g0114000	LOC_Os06g02380	development	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).	These results indicate that OsCpn601 is essential for chloroplast development in rice
OsCpn601	Os06g0114000	LOC_Os06g02380	seedling	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).	The OsCpn601 mutant displayed a striking albino leaf phenotype and was seedling lethal
OsCpn601	Os06g0114000	LOC_Os06g02380	chloroplast development	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).
OsCpn601	Os06g0114000	LOC_Os06g02380	chloroplast development	OsCpn601 is Essential for Chloroplast Development in Rice (Oryza sativa L.).	These results indicate that OsCpn601 is essential for chloroplast development in rice
OsCPn60alpha1|OsCPn60a1	Os12g0277500	LOC_Os12g17910	seedling	OsCpn60alpha1, encoding the plastid chaperonin 60alpha subunit, is essential for folding of rbcL	The oscpn60alpha1 mutant had a pale-green phenotype at the seedling stage and development ceased after the fourth leaf appeared
OsCPn60alpha1|OsCPn60a1	Os12g0277500	LOC_Os12g17910	seedling	OsCpn60alpha1, encoding the plastid chaperonin 60alpha subunit, is essential for folding of rbcL	This demonstrated that OsCpn60alpha1 is required for the folding of rbcL and that failure of that process is seedling-lethal
OsCPn60alpha1|OsCPn60a1	Os12g0277500	LOC_Os12g17910	leaf	OsCpn60alpha1, encoding the plastid chaperonin 60alpha subunit, is essential for folding of rbcL	The oscpn60alpha1 mutant had a pale-green phenotype at the seedling stage and development ceased after the fourth leaf appeared
OsCPn60alpha1|OsCPn60a1	Os12g0277500	LOC_Os12g17910	chloroplast	OsCpn60alpha1, encoding the plastid chaperonin 60alpha subunit, is essential for folding of rbcL	Transiently expressed OsCpn60alpha1:GFP fusion protein was localized to the chloroplast stroma
OsCPPR1	Os02g0110400	LOC_Os02g02020	transcription factor	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Transcriptome analysis revealed that the transcript level of OsGOLDEN-LIKE1 (OsGLK1), which encodes a transcription factor that regulates plastid development and maintenance, was significantly higher in the OsCPPR1 knockdown plants compared to wild-type plants
OsCPPR1	Os02g0110400	LOC_Os02g02020	development	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPPR1	Os02g0110400	LOC_Os02g02020	development	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Transcriptome analysis revealed that the transcript level of OsGOLDEN-LIKE1 (OsGLK1), which encodes a transcription factor that regulates plastid development and maintenance, was significantly higher in the OsCPPR1 knockdown plants compared to wild-type plants
OsCPPR1	Os02g0110400	LOC_Os02g02020	development	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 We therefore conclude that OsCPPR1 suppresses OsGLK1 in the regulation of plastid development and PCD in the tapetum
OsCPPR1	Os02g0110400	LOC_Os02g02020	fertility	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPPR1	Os02g0110400	LOC_Os02g02020	fertility	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Overexpression of OsGLK1 resulted in abnormal tapetum and plastid development, similar to that seen in OsCPPR1 knockdown plants, and suppression of OsGLK1 partially restored pollen fertility in the OsCPPR1 knockdown plants
OsCPPR1	Os02g0110400	LOC_Os02g02020	pollen	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPPR1	Os02g0110400	LOC_Os02g02020	pollen	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Overexpression of OsGLK1 resulted in abnormal tapetum and plastid development, similar to that seen in OsCPPR1 knockdown plants, and suppression of OsGLK1 partially restored pollen fertility in the OsCPPR1 knockdown plants
OsCPPR1	Os02g0110400	LOC_Os02g02020	cell death	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPPR1	Os02g0110400	LOC_Os02g02020	tapetum	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPPR1	Os02g0110400	LOC_Os02g02020	tapetum	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Overexpression of OsGLK1 resulted in abnormal tapetum and plastid development, similar to that seen in OsCPPR1 knockdown plants, and suppression of OsGLK1 partially restored pollen fertility in the OsCPPR1 knockdown plants
OsCPPR1	Os02g0110400	LOC_Os02g02020	tapetum	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 We therefore conclude that OsCPPR1 suppresses OsGLK1 in the regulation of plastid development and PCD in the tapetum
OsCPPR1	Os02g0110400	LOC_Os02g02020	tapetal	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPPR1	Os02g0110400	LOC_Os02g02020	PCD	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 We therefore conclude that OsCPPR1 suppresses OsGLK1 in the regulation of plastid development and PCD in the tapetum
OsCPPR1	Os02g0110400	LOC_Os02g02020	programmed cell death	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPPR1	Os02g0110400	LOC_Os02g02020	plastid	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPPR1	Os02g0110400	LOC_Os02g02020	plastid	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Transcriptome analysis revealed that the transcript level of OsGOLDEN-LIKE1 (OsGLK1), which encodes a transcription factor that regulates plastid development and maintenance, was significantly higher in the OsCPPR1 knockdown plants compared to wild-type plants
OsCPPR1	Os02g0110400	LOC_Os02g02020	plastid	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Overexpression of OsGLK1 resulted in abnormal tapetum and plastid development, similar to that seen in OsCPPR1 knockdown plants, and suppression of OsGLK1 partially restored pollen fertility in the OsCPPR1 knockdown plants
OsCPPR1	Os02g0110400	LOC_Os02g02020	plastid	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 We therefore conclude that OsCPPR1 suppresses OsGLK1 in the regulation of plastid development and PCD in the tapetum
OsCPPR1	Os02g0110400	LOC_Os02g02020	Pollen Fertility	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPPR1	Os02g0110400	LOC_Os02g02020	Pollen Fertility	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Overexpression of OsGLK1 resulted in abnormal tapetum and plastid development, similar to that seen in OsCPPR1 knockdown plants, and suppression of OsGLK1 partially restored pollen fertility in the OsCPPR1 knockdown plants
OsCPPR1	Os02g0110400	LOC_Os02g02020	tapetal programmed cell death	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	 Knocking down OsCPPR1 led to abnormal plastid development in tapetal cells, prolonged tapetal programmed cell death (PCD) and tapetum degradation, and significantly reduced pollen fertility
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	gibberellin	Cloning and Characterization of cDNAs Encodingent-Copalyl Diphosphate Synthases in Wheat: Insight into the Evolution of Rice Phytoalexin Biosynthetic Genes	The phylogenetic tree and expression analyses suggest that TaCPS3 is responsible for gibberellin biosynthesis, while TaCPS1 and TaCPS2 are possible functional homologs of diterpene cyclase genes OsCPS2 and OsCPS4 involved in phytoalexin biosynthesis in rice
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	 ga 	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	The entcopalyl diphosphate synthase (OsCPS) genes, which encode enzymes at the branch point between GA and phytoalexin biosynthesis, were expressed differentially in gid1 relative to the wild type
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	 ga 	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	Specifically, OsCPS1, which encodes an enzyme in the GA biosynthesis pathway, was down-regulated and OsCPS2 and OsCPS4, which encode enzymes in phytoalexin biosynthesis, were up-regulated in gid1
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	gibberellin	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	The expression levels of gibberellin (GA) biosynthetic genes including OsCPS1, OsKS1, OsKO1, OsKAO, OsGA20ox2/SD1 and OsGA2ox3 were significantly increased in d62 mutant
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	dwarf	Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis	It has recently been shown that a loss-of-function mutation of OsCPS1, a gene encoding a putative ent-CDP synthase, results in a severely GA-deficient dwarf phenotype in rice
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	flower	Expression Pattern of the Coparyl Diphosphate Synthase Gene in Developing Rice Anthers	To understand their physiological roles, we examined the site of their biosynthesis by analyzing the expression pattern of a gene (OsCPS) encoding coparyl diphosphate synthase in developing rice flowers
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	ent-CDP synthase	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles	Rice (Oryza sativa L.) has two ent-CDP synthase genes, OsCPS1 and OsCPS2.
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	growth	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles	The results indicate that transcripts of the two ent-CDP synthase genes differentially localize in rice plants according to their distinct biological roles, OsCPS1 for growth and OsCPS2 for defence.
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	dwarf	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles	It has been shown previously that loss-of-function OsCPS1 mutants display a severe dwarf phenotype caused by GA deficiency despite possessing another ent-CDP synthase gene, OsCPS2.
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	GA	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles	It has been shown previously that loss-of-function OsCPS1 mutants display a severe dwarf phenotype caused by GA deficiency despite possessing another ent-CDP synthase gene, OsCPS2.
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	GA deficiency	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles	It has been shown previously that loss-of-function OsCPS1 mutants display a severe dwarf phenotype caused by GA deficiency despite possessing another ent-CDP synthase gene, OsCPS2.
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	GA biosynthesis	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles	It has been thought that OsCPS1 participates in GA biosynthesis, while OsCPS2 participates in the biosynthesis of phytoalexins, phytocassanes A-E, and oryzalexins A-F.
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	seedling	Genome-wide association mapping and gene expression analysis identify OsCPS1 as a new candidate gene controlling early seedling length in rice.	Genome-wide association mapping and gene expression analysis identify OsCPS1 as a new candidate gene controlling early seedling length in rice.
OsCPS|OsCPS1	Os02g0278700	LOC_Os02g17780	domestication	Genome-wide association mapping and gene expression analysis identify OsCPS1 as a new candidate gene controlling early seedling length in rice.	 Population analysis across wild rice, indica and japonica, suggested that OsCPS1 may be under selection in japonica during domestication
OsCPS2|OsCyc2	Os02g0571100|Os02g0570900	LOC_Os02g36210	temperature	Comparison of the Enzymatic Properties ofent-Copalyl Diphosphate Synthases in the Biosynthesis of Phytoalexins and Gibberellins in Rice	Several enzymatic properties of OsCPS2/OsCyc2, including the optimal pH, optimal temperature, divalent cation requirement, and kinetic values for the geranylgeranyl diphosphate (GGDP) substrate, were almost the same as those of OsCPS1
OsCPS2|OsCyc2	Os02g0571100|Os02g0570900	LOC_Os02g36210	ga	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	Specifically, OsCPS1, which encodes an enzyme in the GA biosynthesis pathway, was down-regulated and OsCPS2 and OsCPS4, which encode enzymes in phytoalexin biosynthesis, were up-regulated in gid1
OsCPS2|OsCyc2	Os02g0571100|Os02g0570900	LOC_Os02g36210	gibberellin	Comparison of the Enzymatic Properties ofent-Copalyl Diphosphate Synthases in the Biosynthesis of Phytoalexins and Gibberellins in Rice	The rice genome contains two ent-copalyl diphosphate synthase genes: OsCPS1 acts in gibberellin (phytohormone) biosynthesis, and OsCPS2/OsCyc2 acts in the synthesis of oryzalexins A-F and phytocassanes A-E (phytoalexins)
OsCPS2|OsCyc2	Os02g0571100|Os02g0570900	LOC_Os02g36210	gibberellin	Comparison of the Enzymatic Properties ofent-Copalyl Diphosphate Synthases in the Biosynthesis of Phytoalexins and Gibberellins in Rice	Furthermore, the OsCPS1 activity exhibited approximately 70% inhibition by 100 muM Amo-1618 (a gibberellin biosynthetic inhibitor), whereas the OsCPS2/OsCyc2 activity exhibited approximately 10% inhibition
OsCPS2|OsCyc2	Os02g0571100|Os02g0570900	LOC_Os02g36210	phytohormone	Comparison of the Enzymatic Properties ofent-Copalyl Diphosphate Synthases in the Biosynthesis of Phytoalexins and Gibberellins in Rice	The rice genome contains two ent-copalyl diphosphate synthase genes: OsCPS1 acts in gibberellin (phytohormone) biosynthesis, and OsCPS2/OsCyc2 acts in the synthesis of oryzalexins A-F and phytocassanes A-E (phytoalexins)
OsCPS2|OsCyc2	Os02g0571100|Os02g0570900	LOC_Os02g36210	gibberellin	Cloning and Characterization of cDNAs Encodingent-Copalyl Diphosphate Synthases in Wheat: Insight into the Evolution of Rice Phytoalexin Biosynthetic Genes	The phylogenetic tree and expression analyses suggest that TaCPS3 is responsible for gibberellin biosynthesis, while TaCPS1 and TaCPS2 are possible functional homologs of diterpene cyclase genes OsCPS2 and OsCPS4 involved in phytoalexin biosynthesis in rice
OsCPS2|OsCyc2	Os02g0571100|Os02g0570900	LOC_Os02g36210	ent-CDP synthase	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles	Rice (Oryza sativa L.) has two ent-CDP synthase genes, OsCPS1 and OsCPS2.
OsCPS2|OsCyc2	Os02g0571100|Os02g0570900	LOC_Os02g36210	defence	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles	The results indicate that transcripts of the two ent-CDP synthase genes differentially localize in rice plants according to their distinct biological roles, OsCPS1 for growth and OsCPS2 for defence.
OsCPS2|OsCyc2	Os02g0571100|Os02g0570900	LOC_Os02g36210	biosynthesis of phytoalexins	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles	It has been thought that OsCPS1 participates in GA biosynthesis, while OsCPS2 participates in the biosynthesis of phytoalexins, phytocassanes A-E, and oryzalexins A-F.
OsCPS4|OsCyc1	Os04g0178300	LOC_Os04g09900	growth	Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa)	Here, we apply reverse genetics, using knock-outs of the relevant diterpene synthases (copalyl diphosphate synthase 4 (OsCPS4) and kaurene synthase-like 4 (OsKSL4)), to demonstrate that rice momilactones are involved in allelopathy, including suppressing growth of the widespread rice paddy weed, barnyard grass (Echinochloa crus-galli)
OsCPS4|OsCyc1	Os04g0178300	LOC_Os04g09900	ga	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	Specifically, OsCPS1, which encodes an enzyme in the GA biosynthesis pathway, was down-regulated and OsCPS2 and OsCPS4, which encode enzymes in phytoalexin biosynthesis, were up-regulated in gid1
OsCPS4|OsCyc1	Os04g0178300	LOC_Os04g09900	gibberellin	Cloning and Characterization of cDNAs Encodingent-Copalyl Diphosphate Synthases in Wheat: Insight into the Evolution of Rice Phytoalexin Biosynthetic Genes	The phylogenetic tree and expression analyses suggest that TaCPS3 is responsible for gibberellin biosynthesis, while TaCPS1 and TaCPS2 are possible functional homologs of diterpene cyclase genes OsCPS2 and OsCPS4 involved in phytoalexin biosynthesis in rice
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	leaf	Oryza sativa Chloroplast Signal Recognition Particle 43 (OscpSRP43) Is Required for Chloroplast Development and Photosynthesis.	OscpSRP43 was constitutively expressed in various organs with the highest level in the leaf
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	leaf	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	leaf	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	pgl3 is a rice leaf color mutant derived from Xiushui11 (Oryza sativa L
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	leaf senescence	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	chloroplast	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	Map-based cloning of PGL3 revealed  that it encodes the chloroplast signal recognition particle 43 kDa protein (cpSRP43)
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	senescence	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	senescence	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	Considerable reactive oxygen species were accumulated in the leaves of pgl3, and the transcription levels of its scavenging genes were down-regulated, indicating that pgl3 can accelerate senescence
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	senescence	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	In addition, high temperatures could inhibit the plant's growth and facilitate the process of senescence in pgl3
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	growth	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	In addition, high temperatures could inhibit the plant's growth and facilitate the process of senescence in pgl3
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	map-based cloning	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	Map-based cloning of PGL3 revealed  that it encodes the chloroplast signal recognition particle 43 kDa protein (cpSRP43)
OscpSRP43|PGL3	Os03g0131900	LOC_Os03g03990	reactive oxygen species	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice	Considerable reactive oxygen species were accumulated in the leaves of pgl3, and the transcription levels of its scavenging genes were down-regulated, indicating that pgl3 can accelerate senescence
OscpSRP54b	Os11g0153700	LOC_Os11g05556	chloroplast	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	Knockout lines of OscpSRP54b (LOC_Os11g05556) exhibited similar pale green phenotype to pgl14 with reduced chlorophyll contents and impaired chloroplast development, but showed apparently arrested-growth and died within 3 weeks
OscpSRP54b	Os11g0153700	LOC_Os11g05556	chloroplast	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	Conclusion: Our study demonstrated that both OscpSRP54a and OscpSRP54b were essential for normal chloroplast development by interacting with OscpSRP43 in rice
OscpSRP54b	Os11g0153700	LOC_Os11g05556	chloroplast	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	OscpSRP54a and OscpSRP54b might play distinct roles in transporting different chloroplast proteins into thylakoids through cpSRP-mediated pathway
OscpSRP54b	Os11g0153700	LOC_Os11g05556	growth	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	Both OscpSRP54a and OscpSRP54b were constitutively expressed mainly in shoots and leaves at the vegetative growth stage
OscpSRP54b	Os11g0153700	LOC_Os11g05556	development	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	Conclusion: Our study demonstrated that both OscpSRP54a and OscpSRP54b were essential for normal chloroplast development by interacting with OscpSRP43 in rice
OscpSRP54b	Os11g0153700	LOC_Os11g05556	vegetative	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	Both OscpSRP54a and OscpSRP54b were constitutively expressed mainly in shoots and leaves at the vegetative growth stage
OscpSRP54b	Os11g0153700	LOC_Os11g05556	chloroplast development	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	Knockout lines of OscpSRP54b (LOC_Os11g05556) exhibited similar pale green phenotype to pgl14 with reduced chlorophyll contents and impaired chloroplast development, but showed apparently arrested-growth and died within 3 weeks
OscpSRP54b	Os11g0153700	LOC_Os11g05556	chloroplast development	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	Conclusion: Our study demonstrated that both OscpSRP54a and OscpSRP54b were essential for normal chloroplast development by interacting with OscpSRP43 in rice
OscpSRP54b	Os11g0153700	LOC_Os11g05556	chlorophyll content	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	Knockout lines of OscpSRP54b (LOC_Os11g05556) exhibited similar pale green phenotype to pgl14 with reduced chlorophyll contents and impaired chloroplast development, but showed apparently arrested-growth and died within 3 weeks
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	spikelet	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation	Here, we showed that when OsCR4 mRNA expression was knocked down in rice by RNA interference, the palea and lemma separated at later spikelet stages and gradually turned brown after heading, resulting in the severe interruption of pistil pollination and damage to the development of embryo and endosperm, with defects in aleurone
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	lemma	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation	Here, we showed that when OsCR4 mRNA expression was knocked down in rice by RNA interference, the palea and lemma separated at later spikelet stages and gradually turned brown after heading, resulting in the severe interruption of pistil pollination and damage to the development of embryo and endosperm, with defects in aleurone
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	lemma	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation	An analysis of promoter::GUS reporter plants showed that OsCR4 is specifically expressed in the epidermal cells of paleas and lemmas
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	lemma	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation	Together, these results suggest that OsCR4 plays an essential role in maintaining the interlocking of the palea and lemma by promoting epidermal cell differentiation
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	endosperm	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation	Here, we showed that when OsCR4 mRNA expression was knocked down in rice by RNA interference, the palea and lemma separated at later spikelet stages and gradually turned brown after heading, resulting in the severe interruption of pistil pollination and damage to the development of embryo and endosperm, with defects in aleurone
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	palea	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation	Here, we showed that when OsCR4 mRNA expression was knocked down in rice by RNA interference, the palea and lemma separated at later spikelet stages and gradually turned brown after heading, resulting in the severe interruption of pistil pollination and damage to the development of embryo and endosperm, with defects in aleurone
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	palea	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation	An analysis of promoter::GUS reporter plants showed that OsCR4 is specifically expressed in the epidermal cells of paleas and lemmas
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	palea	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation	Together, these results suggest that OsCR4 plays an essential role in maintaining the interlocking of the palea and lemma by promoting epidermal cell differentiation
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	development	OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.	Together, our results suggest that OsmiR396d regulates the expression of OsGRF genes, which function with OsGIF1 in floret development through targeting of JMJ706 and OsCR4
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	spikelet	MINI SEED 2 (MIS2) Encodes a Receptor-like Kinase that Controls Grain Size and Shape in Rice.	Microscopic analysis revealed that the spikelet epidermal cell size was reduced but the cell number was increased in the mis2 mutant, suggesting that MIS2 controls grain size by coordinately regulating epidermal cell size and cell number
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	grain	MINI SEED 2 (MIS2) Encodes a Receptor-like Kinase that Controls Grain Size and Shape in Rice.	Microscopic analysis revealed that the spikelet epidermal cell size was reduced but the cell number was increased in the mis2 mutant, suggesting that MIS2 controls grain size by coordinately regulating epidermal cell size and cell number
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	map-based cloning	MINI SEED 2 (MIS2) Encodes a Receptor-like Kinase that Controls Grain Size and Shape in Rice.	Map-based cloning revealed that MIS2 encodes a receptor-like kinase CRINKLY4 (CR4) which showed the highest expression in developing panicles
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	grain size	MINI SEED 2 (MIS2) Encodes a Receptor-like Kinase that Controls Grain Size and Shape in Rice.	Microscopic analysis revealed that the spikelet epidermal cell size was reduced but the cell number was increased in the mis2 mutant, suggesting that MIS2 controls grain size by coordinately regulating epidermal cell size and cell number
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	Kinase	MINI SEED 2 (MIS2) Encodes a Receptor-like Kinase that Controls Grain Size and Shape in Rice.	Map-based cloning revealed that MIS2 encodes a receptor-like kinase CRINKLY4 (CR4) which showed the highest expression in developing panicles
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	plasma membrane	MINI SEED 2 (MIS2) Encodes a Receptor-like Kinase that Controls Grain Size and Shape in Rice.	The MIS2 protein is localized primarily on the plasma membrane along with the endosome
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	kinase	MINI SEED 2 (MIS2) Encodes a Receptor-like Kinase that Controls Grain Size and Shape in Rice.	Map-based cloning revealed that MIS2 encodes a receptor-like kinase CRINKLY4 (CR4) which showed the highest expression in developing panicles
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	leaf	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	leaf	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Here, we demonstrate an essential role for the receptor-like kinase OsCR4 in leaf development
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	leaf	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	OsWOX3A, which is auxin responsive and related to leaf development, was activated extensively and ectopically in oscr4 leaves, partially accounting for the observed lack of cell differentiation
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	leaf	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Our data suggest that OsCR4 plays a fundamental role in leaf morphogenesis and embryogenesis by fixing the distribution of auxin
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	root	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	The delayed outgrowth of the first three leaves and seminal root in oscr4 was due to defects in plumule and radicle formation during embryogenesis
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	leaf development	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Here, we demonstrate an essential role for the receptor-like kinase OsCR4 in leaf development
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	leaf development	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	OsWOX3A, which is auxin responsive and related to leaf development, was activated extensively and ectopically in oscr4 leaves, partially accounting for the observed lack of cell differentiation
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	auxin	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	auxin	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Signals from the auxin reporter DR5rev:VENUS were found to be altered in oscr4 embryos and disorganized in oscr4 leaves, in which indole-3-acetic acid accumulation was further revealed by immunofluorescence
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	auxin	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	OsWOX3A, which is auxin responsive and related to leaf development, was activated extensively and ectopically in oscr4 leaves, partially accounting for the observed lack of cell differentiation
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	auxin	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Our data suggest that OsCR4 plays a fundamental role in leaf morphogenesis and embryogenesis by fixing the distribution of auxin
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	development	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Here, we demonstrate an essential role for the receptor-like kinase OsCR4 in leaf development
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	plumule	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	The delayed outgrowth of the first three leaves and seminal root in oscr4 was due to defects in plumule and radicle formation during embryogenesis
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	Kinase	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	Kinase	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Here, we demonstrate an essential role for the receptor-like kinase OsCR4 in leaf development
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	kinase	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice
OsCR4|MIS2	Os03g0637800	LOC_Os03g43670	kinase	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice	Here, we demonstrate an essential role for the receptor-like kinase OsCR4 in leaf development
OsCRL1	Os03g0149000	LOC_Os03g05500	root development	Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice	In addition, OsIAA11 and OsCRL1, which are involved in root development, are required for vasculature-derived callus formation but not for scutellum-derived callus formation.
OsCRL1	Os03g0149000	LOC_Os03g05500	root	Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice	In addition, OsIAA11 and OsCRL1, which are involved in root development, are required for vasculature-derived callus formation but not for scutellum-derived callus formation.
OsCRL1	Os03g0149000	LOC_Os03g05500	callus formation	Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice	In addition, OsIAA11 and OsCRL1, which are involved in root development, are required for vasculature-derived callus formation but not for scutellum-derived callus formation.
OsCRP1	Os09g0565200	LOC_Os09g39180	chloroplast	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	An RNA-immunoprecipitation assay revealed that OsCRP1 is associated with a set of chloroplast RNAs
OsCRP1	Os09g0565200	LOC_Os09g39180	drought	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Additionally, overexpression of OsCRP1 resulted in significantly enhanced drought and cold stress tolerance with higher ATP levels compared to wild type
OsCRP1	Os09g0565200	LOC_Os09g39180	drought	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Thus, our findings suggest that overexpression of OsCRP1 stabilizes a set of mRNAs from genes of the NDH complex involved in increasing CET activity and production of ATP, which consequently confers enhanced drought and cold tolerance
OsCRP1	Os09g0565200	LOC_Os09g39180	photosynthesis	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Importantly, the OsCRP1 overexpressing plants showed a higher cyclic electron transport (CET) activity, which is essential for elevated levels of ATP for photosynthesis
OsCRP1	Os09g0565200	LOC_Os09g39180	tolerance	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Additionally, overexpression of OsCRP1 resulted in significantly enhanced drought and cold stress tolerance with higher ATP levels compared to wild type
OsCRP1	Os09g0565200	LOC_Os09g39180	tolerance	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Thus, our findings suggest that overexpression of OsCRP1 stabilizes a set of mRNAs from genes of the NDH complex involved in increasing CET activity and production of ATP, which consequently confers enhanced drought and cold tolerance
OsCRP1	Os09g0565200	LOC_Os09g39180	cold tolerance	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Thus, our findings suggest that overexpression of OsCRP1 stabilizes a set of mRNAs from genes of the NDH complex involved in increasing CET activity and production of ATP, which consequently confers enhanced drought and cold tolerance
OsCRP1	Os09g0565200	LOC_Os09g39180	cold stress	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Additionally, overexpression of OsCRP1 resulted in significantly enhanced drought and cold stress tolerance with higher ATP levels compared to wild type
OsCRP1	Os09g0565200	LOC_Os09g39180	stress	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Additionally, overexpression of OsCRP1 resulted in significantly enhanced drought and cold stress tolerance with higher ATP levels compared to wild type
OsCRP1	Os09g0565200	LOC_Os09g39180	cold	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Additionally, overexpression of OsCRP1 resulted in significantly enhanced drought and cold stress tolerance with higher ATP levels compared to wild type
OsCRP1	Os09g0565200	LOC_Os09g39180	cold	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Thus, our findings suggest that overexpression of OsCRP1 stabilizes a set of mRNAs from genes of the NDH complex involved in increasing CET activity and production of ATP, which consequently confers enhanced drought and cold tolerance
OsCRP1	Os09g0565200	LOC_Os09g39180	stress tolerance	OsCRP1, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and Cold Tolerance	Additionally, overexpression of OsCRP1 resulted in significantly enhanced drought and cold stress tolerance with higher ATP levels compared to wild type
OsCRS2|CRS2	Os01g0132800	LOC_Os01g04130	leaf	A Single Nucleotide Variation of CRS2 Affected the Establishment of Photosynthetic System in Rice.	 In this study, we identified a rice pale green leaf mutant, crs2
OsCRS2|CRS2	Os01g0132800	LOC_Os01g04130	chloroplast	A Single Nucleotide Variation of CRS2 Affected the Establishment of Photosynthetic System in Rice.	 CRS2 encodes a chloroplast RNA splicing 2 protein localized in the chloroplast
OsCRS2|CRS2	Os01g0132800	LOC_Os01g04130	chloroplast	A Single Nucleotide Variation of CRS2 Affected the Establishment of Photosynthetic System in Rice.	 In summary, the G229R mutation in CRS2 causes chloroplast protein abnormalities and affects photosystem performance in rice; the above findings facilitate the elucidation of the physiological mechanism of chloroplast proteins affecting photosynthesis
OsCRS2|CRS2	Os01g0132800	LOC_Os01g04130	growth	A Single Nucleotide Variation of CRS2 Affected the Establishment of Photosynthetic System in Rice.	 The crs2 mutant showed different degrees of low chlorophyll phenotypes at different growth stages, especially at the seedling stage
OsCRS2|CRS2	Os01g0132800	LOC_Os01g04130	seedling	A Single Nucleotide Variation of CRS2 Affected the Establishment of Photosynthetic System in Rice.	 The crs2 mutant showed different degrees of low chlorophyll phenotypes at different growth stages, especially at the seedling stage
OsCRS2|CRS2	Os01g0132800	LOC_Os01g04130	photosynthesis	A Single Nucleotide Variation of CRS2 Affected the Establishment of Photosynthetic System in Rice.	 In summary, the G229R mutation in CRS2 causes chloroplast protein abnormalities and affects photosystem performance in rice; the above findings facilitate the elucidation of the physiological mechanism of chloroplast proteins affecting photosynthesis
OsCRS2|CRS2	Os01g0132800	LOC_Os01g04130	chlorophyll	A Single Nucleotide Variation of CRS2 Affected the Establishment of Photosynthetic System in Rice.	 The crs2 mutant showed different degrees of low chlorophyll phenotypes at different growth stages, especially at the seedling stage
OsCRS2|CRS2	Os01g0132800	LOC_Os01g04130	photosystem	A Single Nucleotide Variation of CRS2 Affected the Establishment of Photosynthetic System in Rice.	 In summary, the G229R mutation in CRS2 causes chloroplast protein abnormalities and affects photosystem performance in rice; the above findings facilitate the elucidation of the physiological mechanism of chloroplast proteins affecting photosynthesis
OsCRT3	Os01g0895600	LOC_Os01g67054	temperature	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.
OsCRT3	Os01g0895600	LOC_Os01g67054	Kinase	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Notably, cold stress triggers secondary structural changes of OsCRT3 and enhances its binding affinity with OsCIPK7, which finally boosts its kinase activity
OsCRT3	Os01g0895600	LOC_Os01g67054	kinase	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Notably, cold stress triggers secondary structural changes of OsCRT3 and enhances its binding affinity with OsCIPK7, which finally boosts its kinase activity
OsCRT3	Os01g0895600	LOC_Os01g67054	stress	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 OsCRT3 localizes at the ER and mediates increases in cytosolic calcium levels under cold stress
OsCRT3	Os01g0895600	LOC_Os01g67054	stress	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Notably, cold stress triggers secondary structural changes of OsCRT3 and enhances its binding affinity with OsCIPK7, which finally boosts its kinase activity
OsCRT3	Os01g0895600	LOC_Os01g67054	tolerance	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Phenotypic analyses of OsCRT3 knock-out mutants and transgenic overexpression lines demonstrate that OsCRT3 is a positive regulator in chilling tolerance
OsCRT3	Os01g0895600	LOC_Os01g67054	cold stress	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 OsCRT3 localizes at the ER and mediates increases in cytosolic calcium levels under cold stress
OsCRT3	Os01g0895600	LOC_Os01g67054	cold stress	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Notably, cold stress triggers secondary structural changes of OsCRT3 and enhances its binding affinity with OsCIPK7, which finally boosts its kinase activity
OsCRT3	Os01g0895600	LOC_Os01g67054	cold	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 OsCRT3 localizes at the ER and mediates increases in cytosolic calcium levels under cold stress
OsCRT3	Os01g0895600	LOC_Os01g67054	cold	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Notably, cold stress triggers secondary structural changes of OsCRT3 and enhances its binding affinity with OsCIPK7, which finally boosts its kinase activity
OsCRT3	Os01g0895600	LOC_Os01g67054	chilling	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Phenotypic analyses of OsCRT3 knock-out mutants and transgenic overexpression lines demonstrate that OsCRT3 is a positive regulator in chilling tolerance
OsCRT3	Os01g0895600	LOC_Os01g67054	calcium	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 OsCRT3 localizes at the ER and mediates increases in cytosolic calcium levels under cold stress
OsCRT3	Os01g0895600	LOC_Os01g67054	chilling tolerance	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	 Phenotypic analyses of OsCRT3 knock-out mutants and transgenic overexpression lines demonstrate that OsCRT3 is a positive regulator in chilling tolerance
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	oxidative	Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice	The greatly increased activities of reactive oxygen species (ROS) scavenging enzymes, and reduced photosystem (PS) II core proteins CP43, CP47 and D1 in leaves of the Oscrtiso/phs3-1mutant and OsLCY RNAi transgenic rice indicated that photo-oxidative damage occurred in PS II, consistent with the accumulation of ROS in these plants
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	photosynthesis	ZEBRA2, encoding a carotenoid isomerase, is involved in photoprotection in rice	Expression analysis via both RT-PCR and ZEBRA2-promoter-beta-glucuronidase (GUS) transgenic rice indicates that ZEBRA2 is predominantly expressed in mesophyll cells of mature leaves where active photosynthesis occurs
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	oxidative	ZEBRA2, encoding a carotenoid isomerase, is involved in photoprotection in rice	"More severe phenotype of the zebra2 mutant under high light intensity indicates that """"zebra"""" phenotype might be caused by photooxidative damages"
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ABA	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	We found that MHZ5 encodes a carotenoid isomerase and that the mutation in mhz5 blocks carotenoid biosynthesis, reduces ABA accumulation, and promotes ethylene production in etiolated seedlings
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ABA	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	ABA can largely rescue the ethylene response of the mhz5 mutant
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ABA	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	Ethylene induces MHZ5 expression, the production of neoxanthin, an ABA biosynthesis precursor, and ABA accumulation in roots
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ethylene	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	We found that MHZ5 encodes a carotenoid isomerase and that the mutation in mhz5 blocks carotenoid biosynthesis, reduces ABA accumulation, and promotes ethylene production in etiolated seedlings
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ethylene	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	ABA can largely rescue the ethylene response of the mhz5 mutant
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ethylene	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	Ethylene induces MHZ5 expression, the production of neoxanthin, an ABA biosynthesis precursor, and ABA accumulation in roots
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ethylene	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	MHZ5 overexpression results in enhanced ethylene sensitivity in roots and reduced ethylene sensitivity in coleoptiles
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ABA	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	We found that MHZ5 encodes a carotenoid isomerase and that the mutation in mhz5 blocks carotenoid biosynthesis, reduces ABA accumulation, and promotes ethylene production in etiolated seedlings
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ABA	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	ABA can largely rescue the ethylene response of the mhz5 mutant
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ABA	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	Ethylene induces MHZ5 expression, the production of neoxanthin, an ABA biosynthesis precursor, and ABA accumulation in roots
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ethylene response	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	ABA can largely rescue the ethylene response of the mhz5 mutant
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	seedlings	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	We found that MHZ5 encodes a carotenoid isomerase and that the mutation in mhz5 blocks carotenoid biosynthesis, reduces ABA accumulation, and promotes ethylene production in etiolated seedlings
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	ethylene production	Ethylene Responses in Rice Roots and Coleoptiles Are Differentially Regulated by a Carotenoid Isomerase-Mediated Abscisic Acid Pathway.	We found that MHZ5 encodes a carotenoid isomerase and that the mutation in mhz5 blocks carotenoid biosynthesis, reduces ABA accumulation, and promotes ethylene production in etiolated seedlings
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	seedlings	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Prolycopene was accumulated while all-trans-lycopene was barely detectable in the dark-grown mit3 seedlings
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	tillering	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Exogenously applied GR24, a synthetic SL, could rescue the tillering phenotype of mit3
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	tillering	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Our results reveal that the tillering phenotype of mit3 is due to SL deficiency and directly link carotenoid deficiency with SL-regulated rice tillering
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	tiller	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	tiller	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Double mutant analysis of mit3 with the SLs biosynthesis mutant d17 revealed that MIT3 controls tiller development upstream of the SLs biosynthesis pathway
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	development	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Double mutant analysis of mit3 with the SLs biosynthesis mutant d17 revealed that MIT3 controls tiller development upstream of the SLs biosynthesis pathway
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	map-based cloning	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Map-based cloning revealed that MIT3 encodes a carotenoid isomerase (CRTISO), the key enzyme catalyzing the conversion from prolycopene to all-trans-lycopene in carotenoid biosynthesis
OsCRTISO|ZEBRA2|MHZ5|MIT3	Os11g0572700	LOC_Os11g36440	tiller number	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.
OsCRY1b	Os04g0452100	LOC_Os04g37920	sheath	Functional and signaling mechanism analysis of rice CRYPTOCHROME 1	Overexpresion of OsCRY1b resulted in a blue light-dependent short hypcotyl phenotype in Arabidopsis, and a short coleoptile, leaf sheath and leaf blade phenotype in rice (Oryza sativa)
OsCRY1b	Os04g0452100	LOC_Os04g37920	leaf	Functional and signaling mechanism analysis of rice CRYPTOCHROME 1	Overexpresion of OsCRY1b resulted in a blue light-dependent short hypcotyl phenotype in Arabidopsis, and a short coleoptile, leaf sheath and leaf blade phenotype in rice (Oryza sativa)
OsCRY2|CRY2	Os02g0625000	LOC_Os02g41550	flower	Involvement of rice cryptochromes in de-etiolation responses and flowering	Our studies revealed that OsCRY1 genes were mainly expressed in the green plant tissue, while OsCRY2 gene expression was high in the coleoptile, flower and callus
OsCRY2|CRY2	Os02g0625000	LOC_Os02g41550	flower	Involvement of rice cryptochromes in de-etiolation responses and flowering	In addition, OsCRY2 antisense transgenic rice flowered later than WT under both long-day and short-day conditions, indicating that Oscry2 is involved in the promotion of flowering time in rice
OsCRY2|CRY2	Os02g0625000	LOC_Os02g41550	flowering time	Involvement of rice cryptochromes in de-etiolation responses and flowering	In addition, OsCRY2 antisense transgenic rice flowered later than WT under both long-day and short-day conditions, indicating that Oscry2 is involved in the promotion of flowering time in rice
OsCRY2|CRY2	Os02g0625000	LOC_Os02g41550	leaf	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 OsBIC1 regulated blue light-induced leaf sheath elongation through direct interaction with OsCRY1a, OsCRY1b, and OsCRY2 (OsCRYs)
OsCRY2|CRY2	Os02g0625000	LOC_Os02g41550	sheath	OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway.	 OsBIC1 regulated blue light-induced leaf sheath elongation through direct interaction with OsCRY1a, OsCRY1b, and OsCRY2 (OsCRYs)
OsCS1	Os02g0194100	LOC_Os02g10070	tolerance	One novel mitochondrial citrate synthase from Oryza sativa L. can enhance aluminum tolerance in transgenic tobacco.	Possible outlook for OsCS1 to be applied to enhance plant tolerance to Al toxicity was also discussed
OsCSD3	Os03g0219200	LOC_Os03g11960	oxidative stress	Biochemical and functional characterization of OsCSD3, a novel CuZn superoxide dismutase from rice.	The OsCSD3 transcript was up-regulated in response to salinity, drought and oxidative stress
OsCSD3	Os03g0219200	LOC_Os03g11960	drought	Biochemical and functional characterization of OsCSD3, a novel CuZn superoxide dismutase from rice.	The OsCSD3 transcript was up-regulated in response to salinity, drought and oxidative stress
OsCSD3	Os03g0219200	LOC_Os03g11960	tolerance	Biochemical and functional characterization of OsCSD3, a novel CuZn superoxide dismutase from rice.	Unlike several other known CuZn SODs, OsCSD3 showed higher tolerance to hydrogen peroxide (H2O2) and thermal inactivation
OsCSD3	Os03g0219200	LOC_Os03g11960	tolerance	Biochemical and functional characterization of OsCSD3, a novel CuZn superoxide dismutase from rice.	Heterologous over-expression of OsCSD3 enhanced tolerance of E
OsCSD3	Os03g0219200	LOC_Os03g11960	oxidative	Biochemical and functional characterization of OsCSD3, a novel CuZn superoxide dismutase from rice.	The OsCSD3 transcript was up-regulated in response to salinity, drought and oxidative stress
OsCSD3	Os03g0219200	LOC_Os03g11960	stress	Biochemical and functional characterization of OsCSD3, a novel CuZn superoxide dismutase from rice.	The OsCSD3 transcript was up-regulated in response to salinity, drought and oxidative stress
OsCSL1	Os3g0703400	NONE	seedlings	Chlorosis seedling lethality 1 encoding a MAP3K protein is essential for chloroplast development in rice.	 CONCLUSIONS: The findings of this study revealed that OsCSL1 played roles in regulating the expression of multiple chloroplast synthesis-related genes, thereby affecting their functions, and leading to wide-ranging defects, including chlorotic seedlings and severely disrupted chloroplasts containing accumulated starch granules
OsCSL1	Os3g0703400	NONE	chloroplast	Chlorosis seedling lethality 1 encoding a MAP3K protein is essential for chloroplast development in rice.	 Additionally, disruption of OsCSL1 led to reduced expression of chloroplast-associated genes, including chlorophyll biosynthetic genes, plastid-encoded RNA polymerases, nuclear-encoded RNA polymerase, and nuclear-encoded chloroplast genes
OsCSL1	Os3g0703400	NONE	chloroplast	Chlorosis seedling lethality 1 encoding a MAP3K protein is essential for chloroplast development in rice.	 CONCLUSIONS: The findings of this study revealed that OsCSL1 played roles in regulating the expression of multiple chloroplast synthesis-related genes, thereby affecting their functions, and leading to wide-ranging defects, including chlorotic seedlings and severely disrupted chloroplasts containing accumulated starch granules
OsCSL1	Os3g0703400	NONE	Kinase	Chlorosis seedling lethality 1 encoding a MAP3K protein is essential for chloroplast development in rice.	 Molecular cloning revealed that OsCSL1 encoded a MAPK kinase kinase22 (MKKK22) targeted to the endoplasmic reticulum (ER), and functional complementation of OsCSL1 was found to restore the normal phenotype in csl1 plants
OsCSL1	Os3g0703400	NONE	kinase	Chlorosis seedling lethality 1 encoding a MAP3K protein is essential for chloroplast development in rice.	 Molecular cloning revealed that OsCSL1 encoded a MAPK kinase kinase22 (MKKK22) targeted to the endoplasmic reticulum (ER), and functional complementation of OsCSL1 was found to restore the normal phenotype in csl1 plants
OsCSL1	Os3g0703400	NONE	starch	Chlorosis seedling lethality 1 encoding a MAP3K protein is essential for chloroplast development in rice.	 CONCLUSIONS: The findings of this study revealed that OsCSL1 played roles in regulating the expression of multiple chloroplast synthesis-related genes, thereby affecting their functions, and leading to wide-ranging defects, including chlorotic seedlings and severely disrupted chloroplasts containing accumulated starch granules
OsCSL1	Os3g0703400	NONE	chlorophyll	Chlorosis seedling lethality 1 encoding a MAP3K protein is essential for chloroplast development in rice.	 Additionally, disruption of OsCSL1 led to reduced expression of chloroplast-associated genes, including chlorophyll biosynthetic genes, plastid-encoded RNA polymerases, nuclear-encoded RNA polymerase, and nuclear-encoded chloroplast genes
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root hair	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Here we show that the Oryza sativa cellulose synthase-like D1 (OsCSLD1) gene is required for root hair development, as rice (Oryza sativa) mutants that lack OsCSLD1 function develop abnormal root hairs
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root hair	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Because the csld1 mutants develop the same density and number of root hairs along their seminal root as the wild-type plants, we propose that OsCSLD1 function is required for hair elongation but not initiation
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root hair	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Both gene trap expression pattern and in situ hybridization analyses indicate that OsCSLD1 is expressed in only root hair cells
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root hair	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Given that the Arabidopsis (Arabidopsis thaliana) gene KOJAK/AtCSLD3 is required for root hair elongation and is expressed in the root hair, it appears that OsCSLD1 may be the functional ortholog of KOJAK/AtCSLD3 and that these two genes represent the root hair-specific members of this family of proteins
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root hair	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	cell wall	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)	In situ hybridization showed that OsCSLD1 was expressed not only in root hairs but also in epidermal and cortex cell walls except for stele
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	shoot	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)	qRT-PCR analysis revealed that OsCSLD1 was expressed not only in root but also in shoot
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	cellulose	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Here we show that the Oryza sativa cellulose synthase-like D1 (OsCSLD1) gene is required for root hair development, as rice (Oryza sativa) mutants that lack OsCSLD1 function develop abnormal root hairs
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	cellulose	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root hair	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)	In situ hybridization showed that OsCSLD1 was expressed not only in root hairs but also in epidermal and cortex cell walls except for stele
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root hair	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	cellulose	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)	Positional cloning and complementation test revealed that the causal gene of rth2 was Cellulose Synthase-Like D1 (OsCSLD1)
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	cellulose	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Here we show that the Oryza sativa cellulose synthase-like D1 (OsCSLD1) gene is required for root hair development, as rice (Oryza sativa) mutants that lack OsCSLD1 function develop abnormal root hairs
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Because the csld1 mutants develop the same density and number of root hairs along their seminal root as the wild-type plants, we propose that OsCSLD1 function is required for hair elongation but not initiation
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Both gene trap expression pattern and in situ hybridization analyses indicate that OsCSLD1 is expressed in only root hair cells
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Furthermore, OsCSLD1 is the only member of the four rice CSLD genes that shows root-specific expression
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	Given that the Arabidopsis (Arabidopsis thaliana) gene KOJAK/AtCSLD3 is required for root hair elongation and is expressed in the root hair, it appears that OsCSLD1 may be the functional ortholog of KOJAK/AtCSLD3 and that these two genes represent the root hair-specific members of this family of proteins
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice	OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)	qRT-PCR analysis revealed that OsCSLD1 was expressed not only in root but also in shoot
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)	In situ hybridization showed that OsCSLD1 was expressed not only in root hairs but also in epidermal and cortex cell walls except for stele
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)	Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.)
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root	OsCSLD1 Mediates NH(4)(+)-Dependent Root Hair Growth Suppression and AMT1;2 Expression in Rice (Oryza sativa L.).	OsCSLD1 Mediates NH(4)(+)-Dependent Root Hair Growth Suppression and AMT1;2 Expression in Rice (Oryza sativa L.).
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	growth	OsCSLD1 Mediates NH(4)(+)-Dependent Root Hair Growth Suppression and AMT1;2 Expression in Rice (Oryza sativa L.).	OsCSLD1 Mediates NH(4)(+)-Dependent Root Hair Growth Suppression and AMT1;2 Expression in Rice (Oryza sativa L.).
OsCSLD1|rth-2	Os10g0578200	LOC_Os10g42750	root hair	OsCSLD1 Mediates NH(4)(+)-Dependent Root Hair Growth Suppression and AMT1;2 Expression in Rice (Oryza sativa L.).	OsCSLD1 Mediates NH(4)(+)-Dependent Root Hair Growth Suppression and AMT1;2 Expression in Rice (Oryza sativa L.).
OsCSN1	Os03g0116500	LOC_Os03g02540	seedlings	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.
OsCSN1	Os03g0116500	LOC_Os03g02540	seedlings	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	 The core structural domain of action that inhibits the growth of the aboveground part of rice seedlings is located at the N-terminal of OsCSN1
OsCSN1	Os03g0116500	LOC_Os03g02540	growth	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.
OsCSN1	Os03g0116500	LOC_Os03g02540	growth	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	 The mechanism of OsCSN1 and its N-terminal effects on rice seedling growth and development under blue light conditions were investigated
OsCSN1	Os03g0116500	LOC_Os03g02540	growth	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	 The core structural domain of action that inhibits the growth of the aboveground part of rice seedlings is located at the N-terminal of OsCSN1
OsCSN1	Os03g0116500	LOC_Os03g02540	development	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	 The mechanism of OsCSN1 and its N-terminal effects on rice seedling growth and development under blue light conditions were investigated
OsCSN1	Os03g0116500	LOC_Os03g02540	seedling	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	 The mechanism of OsCSN1 and its N-terminal effects on rice seedling growth and development under blue light conditions were investigated
OsCSN1	Os03g0116500	LOC_Os03g02540	ga	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.
OsCSN1	Os03g0116500	LOC_Os03g02540	 ga 	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.
OsCSN1	Os03g0116500	LOC_Os03g02540	GA	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.
OsCSN1	Os03g0116500	LOC_Os03g02540	seedling growth	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	 The mechanism of OsCSN1 and its N-terminal effects on rice seedling growth and development under blue light conditions were investigated
OsCSN5A	Os04g0654700	LOC_Os04g56070	dwarf	Rice black-streaked dwarf virus-encoded P5-1 regulates the ubiquitination activity of SCF E3 ligases and inhibits jasmonate signaling to benefit its infection in rice.	Here, we present evidence of a novel strategy used by Rice black-streaked dwarf virus (RBSDV) to regulate ubiquitination in rice (Oryza sativa) by interfering in the activity of OsCSN5A
OsCSP2	Os08g0129200	LOC_Os08g03520	root	Disulfide proteomics of rice cultured cells in response to OsRacl and probenazole-related immune signaling pathway in rice.	Bimolecular fluorescence complementation analysis revealed that OsCSP2 is localized in the nucleus as a homo dimer in rice root cells
OsCSP2	Os08g0129200	LOC_Os08g03520	nucleus	Disulfide proteomics of rice cultured cells in response to OsRacl and probenazole-related immune signaling pathway in rice.	Bimolecular fluorescence complementation analysis revealed that OsCSP2 is localized in the nucleus as a homo dimer in rice root cells
OsCTF	Os06g0296100	LOC_Os06g19210	tolerance	Identification of epigenetic mechanisms in paddy crop associated with lowering environmentally related cadmium risks to food safety.	We functionally identified a new locus for a putative cadmium tolerance factor (here termed as OsCTF) and demonstrated that Cd-induced DNA demethylation is the drive of OsCTF expression
OsCTF	Os06g0296100	LOC_Os06g19210	cadmium	Identification of epigenetic mechanisms in paddy crop associated with lowering environmentally related cadmium risks to food safety.	We functionally identified a new locus for a putative cadmium tolerance factor (here termed as OsCTF) and demonstrated that Cd-induced DNA demethylation is the drive of OsCTF expression
OsCTF	Os06g0296100	LOC_Os06g19210	demethylation	Identification of epigenetic mechanisms in paddy crop associated with lowering environmentally related cadmium risks to food safety.	We functionally identified a new locus for a putative cadmium tolerance factor (here termed as OsCTF) and demonstrated that Cd-induced DNA demethylation is the drive of OsCTF expression
OsCTF	Os06g0296100	LOC_Os06g19210	cadmium tolerance	Identification of epigenetic mechanisms in paddy crop associated with lowering environmentally related cadmium risks to food safety.	We functionally identified a new locus for a putative cadmium tolerance factor (here termed as OsCTF) and demonstrated that Cd-induced DNA demethylation is the drive of OsCTF expression
OscTPI	Os01g0841600	LOC_Os01g62420	root	Characterization of stress and methylglyoxal inducible triose phosphate isomerase (OscTPI) from rice	There was also a corresponding increase in the protein and the enzyme activity of OscTPI both in shoot and root tissues under MG stress
OscTPI	Os01g0841600	LOC_Os01g62420	shoot	Characterization of stress and methylglyoxal inducible triose phosphate isomerase (OscTPI) from rice	There was also a corresponding increase in the protein and the enzyme activity of OscTPI both in shoot and root tissues under MG stress
OscTPI	Os01g0841600	LOC_Os01g62420	phosphate	Characterization of stress and methylglyoxal inducible triose phosphate isomerase (OscTPI) from rice	Characterization of stress and methylglyoxal inducible triose phosphate isomerase (OscTPI) from rice
OscTPI	Os01g0841600	LOC_Os01g62420	abiotic stress	Characterization of stress and methylglyoxal inducible triose phosphate isomerase (OscTPI) from rice	Real time PCR analysis revealed that OscTPI transcript level was regulated in response to various abiotic stresses
OsCTR1	Os04g0243700	LOC_Os04g16970	seed germination	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Heterogeneous overexpression of OsCTR1 in Arabidopsis exhibited hypersensitive phenotypes with respect to ABA-responsive seed germination, seedling growth and stomatal closure
OsCTR1	Os04g0243700	LOC_Os04g16970	stomatal	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Heterogeneous overexpression of OsCTR1 in Arabidopsis exhibited hypersensitive phenotypes with respect to ABA-responsive seed germination, seedling growth and stomatal closure
OsCTR1	Os04g0243700	LOC_Os04g16970	phytohormone	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	OsCTR1 was highly expressed in response to dehydration treatment and defense-related phytohormones, and its encoded protein was localized in both the chloroplasts and the cytosol
OsCTR1	Os04g0243700	LOC_Os04g16970	stomata	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Heterogeneous overexpression of OsCTR1 in Arabidopsis exhibited hypersensitive phenotypes with respect to ABA-responsive seed germination, seedling growth and stomatal closure
OsCTR1	Os04g0243700	LOC_Os04g16970	defense	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	OsCTR1 was highly expressed in response to dehydration treatment and defense-related phytohormones, and its encoded protein was localized in both the chloroplasts and the cytosol
OsCTR1	Os04g0243700	LOC_Os04g16970	chloroplast	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	OsCTR1 was highly expressed in response to dehydration treatment and defense-related phytohormones, and its encoded protein was localized in both the chloroplasts and the cytosol
OsCTR1	Os04g0243700	LOC_Os04g16970	chloroplast	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Several interacting partners were identified, which were mainly targeted to the chloroplasts, and interactions with OsCTR1 were confirmed by using biomolecular fluorescence complementation (BiFC)
OsCTR1	Os04g0243700	LOC_Os04g16970	chloroplast	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Interestingly, two chloroplast-localized proteins (OsCP12 and OsRP1) interacted with OsCTR1 in the cytosol, and ubiquitination by OsCTR1 led to protein degradation via the Ub 26S proteasome
OsCTR1	Os04g0243700	LOC_Os04g16970	chloroplast	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis
OsCTR1	Os04g0243700	LOC_Os04g16970	drought	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Here, we found that a rice gene, OsCTR1, encoding the RING Ub E3 ligase plays an important role in drought tolerance
OsCTR1	Os04g0243700	LOC_Os04g16970	drought	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis
OsCTR1	Os04g0243700	LOC_Os04g16970	seed	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Heterogeneous overexpression of OsCTR1 in Arabidopsis exhibited hypersensitive phenotypes with respect to ABA-responsive seed germination, seedling growth and stomatal closure
OsCTR1	Os04g0243700	LOC_Os04g16970	growth	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Heterogeneous overexpression of OsCTR1 in Arabidopsis exhibited hypersensitive phenotypes with respect to ABA-responsive seed germination, seedling growth and stomatal closure
OsCTR1	Os04g0243700	LOC_Os04g16970	drought tolerance	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Here, we found that a rice gene, OsCTR1, encoding the RING Ub E3 ligase plays an important role in drought tolerance
OsCTR1	Os04g0243700	LOC_Os04g16970	drought tolerance	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis
OsCTR1	Os04g0243700	LOC_Os04g16970	seedling	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Heterogeneous overexpression of OsCTR1 in Arabidopsis exhibited hypersensitive phenotypes with respect to ABA-responsive seed germination, seedling growth and stomatal closure
OsCTR2	Os02g0527600	LOC_Os02g32610	tiller number	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Yield-related agronomic traits, including flowering time and effective tiller number, were altered in osctr2 and 35S:OsCTR2 (1-513) transgenic lines
OsCTR2	Os02g0527600	LOC_Os02g32610	growth	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	The osctr2 loss-of-function mutation and expression of the 35S:OsCTR2 (1-513) transgene that encodes the OsCTR2 N terminus (residues 1-513) revealed several and many aspects, respectively, of ethylene-induced growth alteration in rice
OsCTR2	Os02g0527600	LOC_Os02g32610	growth	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Because the osctr2 allele did not produce all aspects of ethylene-induced growth alteration, the ethylene-receptor signal output might be mediated in part by OsCTR2 and by other components in rice
OsCTR2	Os02g0527600	LOC_Os02g32610	growth	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Our understanding of roles of ethylene in various aspects of growth and development in japonica rice varieties could be advanced with the use of the osctr2 and 35S:OsCTR2 (1-513) transgenic lines
OsCTR2	Os02g0527600	LOC_Os02g32610	tiller	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Yield-related agronomic traits, including flowering time and effective tiller number, were altered in osctr2 and 35S:OsCTR2 (1-513) transgenic lines
OsCTR2	Os02g0527600	LOC_Os02g32610	flower	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Yield-related agronomic traits, including flowering time and effective tiller number, were altered in osctr2 and 35S:OsCTR2 (1-513) transgenic lines
OsCTR2	Os02g0527600	LOC_Os02g32610	flowering time	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Yield-related agronomic traits, including flowering time and effective tiller number, were altered in osctr2 and 35S:OsCTR2 (1-513) transgenic lines
OsCTR2	Os02g0527600	LOC_Os02g32610	yield	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Yield-related agronomic traits, including flowering time and effective tiller number, were altered in osctr2 and 35S:OsCTR2 (1-513) transgenic lines
OsCTR2	Os02g0527600	LOC_Os02g32610	ethylene	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Arabidopsis ethylene receptors ETHYLENE RESPONSE1 and ETHYLENE RESPONSE SENSOR1 physically interacted with OsCTR2 on yeast two-hybrid assay, and green fluorescence protein-tagged OsCTR2 was localized at the endoplasmic reticulum
OsCTR2	Os02g0527600	LOC_Os02g32610	ethylene	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	The osctr2 loss-of-function mutation and expression of the 35S:OsCTR2 (1-513) transgene that encodes the OsCTR2 N terminus (residues 1-513) revealed several and many aspects, respectively, of ethylene-induced growth alteration in rice
OsCTR2	Os02g0527600	LOC_Os02g32610	ethylene	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Because the osctr2 allele did not produce all aspects of ethylene-induced growth alteration, the ethylene-receptor signal output might be mediated in part by OsCTR2 and by other components in rice
OsCTR2	Os02g0527600	LOC_Os02g32610	ethylene	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development	Our understanding of roles of ethylene in various aspects of growth and development in japonica rice varieties could be advanced with the use of the osctr2 and 35S:OsCTR2 (1-513) transgenic lines
OsCTZFP8	Os08g0300366	LOC_Os08g20580	transcription factor	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.
OsCTZFP8	Os08g0300366	LOC_Os08g20580	transcription factor	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	In the present study, we isolated and functionally characterized a new C2H2 zinc finger protein transcription factor OsCTZFP8 in rice
OsCTZFP8	Os08g0300366	LOC_Os08g20580	transcription factor	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	These results demonstrate that OsCTZFP8 was a C2H2 zinc finger transcription factor that plays an important role in cold tolerance in rice
OsCTZFP8	Os08g0300366	LOC_Os08g20580	pollen	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Transgenic rice overexpressing OsCTZFP8 exhibited cold tolerant phenotypes with significantly higher pollen fertilities and seed setting rates than nontransgenic control plants
OsCTZFP8	Os08g0300366	LOC_Os08g20580	seed	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Transgenic rice overexpressing OsCTZFP8 exhibited cold tolerant phenotypes with significantly higher pollen fertilities and seed setting rates than nontransgenic control plants
OsCTZFP8	Os08g0300366	LOC_Os08g20580	tolerance	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.
OsCTZFP8	Os08g0300366	LOC_Os08g20580	tolerance	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	These results demonstrate that OsCTZFP8 was a C2H2 zinc finger transcription factor that plays an important role in cold tolerance in rice
OsCTZFP8	Os08g0300366	LOC_Os08g20580	cold tolerance	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.
OsCTZFP8	Os08g0300366	LOC_Os08g20580	cold tolerance	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	These results demonstrate that OsCTZFP8 was a C2H2 zinc finger transcription factor that plays an important role in cold tolerance in rice
OsCTZFP8	Os08g0300366	LOC_Os08g20580	cold stress	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Expression of OsCTZFP8 was differentially induced by several abiotic stresses and was strongly induced by cold stress
OsCTZFP8	Os08g0300366	LOC_Os08g20580	abiotic stress	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Expression of OsCTZFP8 was differentially induced by several abiotic stresses and was strongly induced by cold stress
OsCTZFP8	Os08g0300366	LOC_Os08g20580	stress	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Expression of OsCTZFP8 was differentially induced by several abiotic stresses and was strongly induced by cold stress
OsCTZFP8	Os08g0300366	LOC_Os08g20580	zinc	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.
OsCTZFP8	Os08g0300366	LOC_Os08g20580	zinc	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	In the present study, we isolated and functionally characterized a new C2H2 zinc finger protein transcription factor OsCTZFP8 in rice
OsCTZFP8	Os08g0300366	LOC_Os08g20580	zinc	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	OsCTZFP8 encodes a C2H2 zinc finger protein, which contains a typical zinc finger motif, as well as a potential nuclear localization signal (NLS) and a leucine-rich region (L-box)
OsCTZFP8	Os08g0300366	LOC_Os08g20580	zinc	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	These results demonstrate that OsCTZFP8 was a C2H2 zinc finger transcription factor that plays an important role in cold tolerance in rice
OsCTZFP8	Os08g0300366	LOC_Os08g20580	biotic stress	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Expression of OsCTZFP8 was differentially induced by several abiotic stresses and was strongly induced by cold stress
OsCTZFP8	Os08g0300366	LOC_Os08g20580	R protein	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.
OsCTZFP8	Os08g0300366	LOC_Os08g20580	R protein	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	In the present study, we isolated and functionally characterized a new C2H2 zinc finger protein transcription factor OsCTZFP8 in rice
OsCTZFP8	Os08g0300366	LOC_Os08g20580	R protein	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	OsCTZFP8 encodes a C2H2 zinc finger protein, which contains a typical zinc finger motif, as well as a potential nuclear localization signal (NLS) and a leucine-rich region (L-box)
OsCTZFP8	Os08g0300366	LOC_Os08g20580	R protein	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Subcellular localization assay and yeast one-hybrid analysis revealed that OsCTZFP8 was a nuclear protein and has transactivation activity
OsCTZFP8	Os08g0300366	LOC_Os08g20580	Ubiquitin	Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	To characterize the function of OsCTZFP8 in rice, the full-length cDNA of OsCTZFP8 was isolated and transgenic rice with overexpression of OsCTZFP8 driven by the maize ubiquitin promoter was generated using Agrobacterium-mediated transformation
OsCUC1|OMTN5	Os06g0344900	LOC_Os06g23650	leaf	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	Further study indicated that OsCUC1 physically interacts with leaf-rolling related protein CURLED LEAF AND DWARF 1 (CLD1) and stabilizes it in the nucleus to control leaf morphology
OsCUC1|OMTN5	Os06g0344900	LOC_Os06g23650	sterility	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	In addition, knockout of OsCUC1 leads to multiple defects, including dwarf plant architecture, male sterility and twisted-rolling leaves
OsCUC1|OMTN5	Os06g0344900	LOC_Os06g23650	stamen	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	A single mutation in either OsCUC1 or OsCUC3 leads to defects in the establishment of the meristem/organ boundary, resulting in reduced stamen numbers and the fusion of leaves and filaments, and the defects are greatly enhanced in the double mutant
OsCUC1|OMTN5	Os06g0344900	LOC_Os06g23650	nucleus	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	Further study indicated that OsCUC1 physically interacts with leaf-rolling related protein CURLED LEAF AND DWARF 1 (CLD1) and stabilizes it in the nucleus to control leaf morphology
OsCUC1|OMTN5	Os06g0344900	LOC_Os06g23650	dwarf	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	In addition, knockout of OsCUC1 leads to multiple defects, including dwarf plant architecture, male sterility and twisted-rolling leaves
OsCUC1|OMTN5	Os06g0344900	LOC_Os06g23650	dwarf	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	Further study indicated that OsCUC1 physically interacts with leaf-rolling related protein CURLED LEAF AND DWARF 1 (CLD1) and stabilizes it in the nucleus to control leaf morphology
OsCUC1|OMTN5	Os06g0344900	LOC_Os06g23650	male sterility	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	In addition, knockout of OsCUC1 leads to multiple defects, including dwarf plant architecture, male sterility and twisted-rolling leaves
OsCUC1|OMTN5	Os06g0344900	LOC_Os06g23650	plant architecture	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	In addition, knockout of OsCUC1 leads to multiple defects, including dwarf plant architecture, male sterility and twisted-rolling leaves
OsCUC1|OMTN5	Os06g0344900	LOC_Os06g23650	stamen number	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	A single mutation in either OsCUC1 or OsCUC3 leads to defects in the establishment of the meristem/organ boundary, resulting in reduced stamen numbers and the fusion of leaves and filaments, and the defects are greatly enhanced in the double mutant
OsCUC3	Os08g0511200	LOC_Os08g40030	stamen	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	A single mutation in either OsCUC1 or OsCUC3 leads to defects in the establishment of the meristem/organ boundary, resulting in reduced stamen numbers and the fusion of leaves and filaments, and the defects are greatly enhanced in the double mutant
OsCUC3	Os08g0511200	LOC_Os08g40030	stamen number	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification	A single mutation in either OsCUC1 or OsCUC3 leads to defects in the establishment of the meristem/organ boundary, resulting in reduced stamen numbers and the fusion of leaves and filaments, and the defects are greatly enhanced in the double mutant
OsCUC3	Os08g0511200	LOC_Os08g40030	leaf	OsmiR164-targeted OsNAM, a boundary gene, plays important roles in rice leaf and panicle development	The osnam oscuc3 double mutant, however, resulted in severe leaf fusion of the first two leaves, while the osnam single mutant showed a similar phenotype from the seventh leaf
OsCUC3	Os08g0511200	LOC_Os08g40030	development	OsmiR164-targeted OsNAM, a boundary gene, plays important roles in rice leaf and panicle development	Loss-of-function mutants for OsCUC3 resulted in no obvious defects throughout the development of the rice
OsCUC3	Os08g0511200	LOC_Os08g40030	development	OsmiR164-targeted OsNAM, a boundary gene, plays important roles in rice leaf and panicle development	The results indicated that OsNAM and OsCUC3 act redundantly for boundary specification during postembryonic development
OsCUC3	Os08g0511200	LOC_Os08g40030	development	OsmiR164-targeted OsNAM, a boundary gene, plays important roles in rice leaf and panicle development	Overall, we have described the biological functions of OsNAM and OsCUC3 in rice development and the expression characteristics of OsNAM
OsCUGT1	Os01g0622000	LOC_Os01g43380	development	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 RNA sequencing revealed that multiple biological processes associated with phenylpropanoid biosynthesis, cytokinin metabolism and pollen development are affected in the oscugt1 mutant
OsCUGT1	Os01g0622000	LOC_Os01g43380	development	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 Overall, these results suggest that rice OsCUGT1 plays an essential role in rice development
OsCUGT1	Os01g0622000	LOC_Os01g43380	spikelet	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 Histological pollen analysis suggests that the spikelet sterility in oscugt1 mutants may be caused by abnormal microsporogenesis
OsCUGT1	Os01g0622000	LOC_Os01g43380	fertility	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 Moreover, multiple transgenic plants with knockdown of OsCUGT1 expression through RNA interference were obtained, which also showed obvious defects in plant height and fertility
OsCUGT1	Os01g0622000	LOC_Os01g43380	pollen	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 Histological pollen analysis suggests that the spikelet sterility in oscugt1 mutants may be caused by abnormal microsporogenesis
OsCUGT1	Os01g0622000	LOC_Os01g43380	pollen	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 RNA sequencing revealed that multiple biological processes associated with phenylpropanoid biosynthesis, cytokinin metabolism and pollen development are affected in the oscugt1 mutant
OsCUGT1	Os01g0622000	LOC_Os01g43380	sterility	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 OsCUGT1 was knocked out by using the clustered regularly interspaced short palindromic repeats (CRISPR) system to obtain the mutant oscugt1, which showed a severe dwarf and sterility phenotype
OsCUGT1	Os01g0622000	LOC_Os01g43380	sterility	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 Histological pollen analysis suggests that the spikelet sterility in oscugt1 mutants may be caused by abnormal microsporogenesis
OsCUGT1	Os01g0622000	LOC_Os01g43380	pollen development	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 RNA sequencing revealed that multiple biological processes associated with phenylpropanoid biosynthesis, cytokinin metabolism and pollen development are affected in the oscugt1 mutant
OsCUGT1	Os01g0622000	LOC_Os01g43380	cytokinin	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 RNA sequencing revealed that multiple biological processes associated with phenylpropanoid biosynthesis, cytokinin metabolism and pollen development are affected in the oscugt1 mutant
OsCUGT1	Os01g0622000	LOC_Os01g43380	dwarf	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 OsCUGT1 was knocked out by using the clustered regularly interspaced short palindromic repeats (CRISPR) system to obtain the mutant oscugt1, which showed a severe dwarf and sterility phenotype
OsCUGT1	Os01g0622000	LOC_Os01g43380	height	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 Moreover, multiple transgenic plants with knockdown of OsCUGT1 expression through RNA interference were obtained, which also showed obvious defects in plant height and fertility
OsCUGT1	Os01g0622000	LOC_Os01g43380	plant height	Cold-upregulated glycosyltransferase gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	 Moreover, multiple transgenic plants with knockdown of OsCUGT1 expression through RNA interference were obtained, which also showed obvious defects in plant height and fertility
OsCUL1-1	Os01g0369000	LOC_Os01g27150	abiotic stress	Characterization and comparative expression analysis of CUL1 genes in rice	However, its expression pattern in response to hormones and abiotic stresses was somehow different from those of the OsCUL1-1 and OsCUL1-2 genes
OsCUL1-1	Os01g0369000	LOC_Os01g27150	ABA	Characterization and comparative expression analysis of CUL1 genes in rice	OsCUL1-1 and OsCUL1-2 genes were commonly upregulated in dry seeds and by ABA and salt/drought stresses, implying their involvement in ABA-mediated processes
OsCUL1-1	Os01g0369000	LOC_Os01g27150	biotic stress	Characterization and comparative expression analysis of CUL1 genes in rice	However, its expression pattern in response to hormones and abiotic stresses was somehow different from those of the OsCUL1-1 and OsCUL1-2 genes
OsCUL1-1	Os01g0369000	LOC_Os01g27150	ABA	Characterization and comparative expression analysis of CUL1 genes in rice	OsCUL1-1 and OsCUL1-2 genes were commonly upregulated in dry seeds and by ABA and salt/drought stresses, implying their involvement in ABA-mediated processes
OsCUL1-1	Os01g0369000	LOC_Os01g27150	drought stress	Characterization and comparative expression analysis of CUL1 genes in rice	OsCUL1-1 and OsCUL1-2 genes were commonly upregulated in dry seeds and by ABA and salt/drought stresses, implying their involvement in ABA-mediated processes
OsCUL1-2	Os05g0149600	LOC_Os05g05700	abiotic stress	Characterization and comparative expression analysis of CUL1 genes in rice.	However, its expression pattern in response to hormones and abiotic stresses was somehow different from those of the OsCUL1-1 and OsCUL1-2 genes
OsCUL1-2	Os05g0149600	LOC_Os05g05700	ABA	Characterization and comparative expression analysis of CUL1 genes in rice.	OsCUL1-1 and OsCUL1-2 genes were commonly upregulated in dry seeds and by ABA and salt/drought stresses, implying their involvement in ABA-mediated processes
OsCUL1-2	Os05g0149600	LOC_Os05g05700	biotic stress	Characterization and comparative expression analysis of CUL1 genes in rice.	However, its expression pattern in response to hormones and abiotic stresses was somehow different from those of the OsCUL1-1 and OsCUL1-2 genes
OsCUL1-2	Os05g0149600	LOC_Os05g05700	ABA	Characterization and comparative expression analysis of CUL1 genes in rice.	OsCUL1-1 and OsCUL1-2 genes were commonly upregulated in dry seeds and by ABA and salt/drought stresses, implying their involvement in ABA-mediated processes
OsCUL1-2	Os05g0149600	LOC_Os05g05700	drought stress	Characterization and comparative expression analysis of CUL1 genes in rice.	OsCUL1-1 and OsCUL1-2 genes were commonly upregulated in dry seeds and by ABA and salt/drought stresses, implying their involvement in ABA-mediated processes
OsCUL1-3	Os01g0369200|Os01g0369366	LOC_Os01g27160	drought	Characterization and comparative expression analysis of CUL1 genes in rice.	Expression of the OsCUL1-3 gene was also induced in dry seeds and by ABA-related salt and drought stresses, implying their participation in ABA responses
OsCUL1-3	Os01g0369200|Os01g0369366	LOC_Os01g27160	salt	Characterization and comparative expression analysis of CUL1 genes in rice.	Expression of the OsCUL1-3 gene was also induced in dry seeds and by ABA-related salt and drought stresses, implying their participation in ABA responses
OsCUL1-3	Os01g0369200|Os01g0369366	LOC_Os01g27160	ABA	Characterization and comparative expression analysis of CUL1 genes in rice.	Expression of the OsCUL1-3 gene was also induced in dry seeds and by ABA-related salt and drought stresses, implying their participation in ABA responses
OsCUL1-3	Os01g0369200|Os01g0369366	LOC_Os01g27160	ABA	Characterization and comparative expression analysis of CUL1 genes in rice.	Expression of the OsCUL1-3 gene was also induced in dry seeds and by ABA-related salt and drought stresses, implying their participation in ABA responses
OsCUL1-3	Os01g0369200|Os01g0369366	LOC_Os01g27160	drought stress	Characterization and comparative expression analysis of CUL1 genes in rice.	Expression of the OsCUL1-3 gene was also induced in dry seeds and by ABA-related salt and drought stresses, implying their participation in ABA responses
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	resistance	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	The rice lesion mimic mutant oscul3a displays a significant increase in the accumulation of flg22- and chitin-induced reactive oxygen species, and in pathogenesis-related gene expression as well as resistance to Magnaporthe oryzae and Xanthomonas oryzae pv
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	magnaporthe oryzae	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	The rice lesion mimic mutant oscul3a displays a significant increase in the accumulation of flg22- and chitin-induced reactive oxygen species, and in pathogenesis-related gene expression as well as resistance to Magnaporthe oryzae and Xanthomonas oryzae pv
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	cell death	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	cell death	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	Here, we show that rice OsCUL3a is important for the regulation of cell death and immunity
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	cell death	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	Strikingly, OsCUL3a interacts with and degrades OsNPR1, which acts as a positive regulator of cell death in rice
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	cell death	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	Our data demonstrate that OsCUL3a negatively regulates cell death and immunity by degrading OsNPR1 in rice
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	immunity	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	immunity	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	Here, we show that rice OsCUL3a is important for the regulation of cell death and immunity
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	immunity	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	Our data demonstrate that OsCUL3a negatively regulates cell death and immunity by degrading OsNPR1 in rice
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	lesion	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	The rice lesion mimic mutant oscul3a displays a significant increase in the accumulation of flg22- and chitin-induced reactive oxygen species, and in pathogenesis-related gene expression as well as resistance to Magnaporthe oryzae and Xanthomonas oryzae pv
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	lesion	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	We cloned the OsCUL3a gene via a map-based strategy and found that the lesion mimic phenotype of oscul3a is associated with the early termination of OsCUL3a protein
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	lesion	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	Furthermore, the oscul3a osnpr1 double mutant does not exhibit the lesion mimic phenotype of the oscul3a mutant
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	lesion mimic	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	The rice lesion mimic mutant oscul3a displays a significant increase in the accumulation of flg22- and chitin-induced reactive oxygen species, and in pathogenesis-related gene expression as well as resistance to Magnaporthe oryzae and Xanthomonas oryzae pv
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	lesion mimic	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	We cloned the OsCUL3a gene via a map-based strategy and found that the lesion mimic phenotype of oscul3a is associated with the early termination of OsCUL3a protein
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	lesion mimic	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	Furthermore, the oscul3a osnpr1 double mutant does not exhibit the lesion mimic phenotype of the oscul3a mutant
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	reactive oxygen species	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	The rice lesion mimic mutant oscul3a displays a significant increase in the accumulation of flg22- and chitin-induced reactive oxygen species, and in pathogenesis-related gene expression as well as resistance to Magnaporthe oryzae and Xanthomonas oryzae pv
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	growth	OsCUL3a-associated molecular switches have functions in cell metabolism, cell death, and disease resistance.	 In oscul3a (oscullin3a) mutants, OsCUL3a-associated molecular switches are responsible for disrupted cell metabolism that leads to increased total lipid content in rice grain, a late accumulation of H2O2 in leaves, enhanced Xoo disease resistance, and suppressed panicle and first internode growth
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	panicle	OsCUL3a-associated molecular switches have functions in cell metabolism, cell death, and disease resistance.	 In oscul3a (oscullin3a) mutants, OsCUL3a-associated molecular switches are responsible for disrupted cell metabolism that leads to increased total lipid content in rice grain, a late accumulation of H2O2 in leaves, enhanced Xoo disease resistance, and suppressed panicle and first internode growth
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	disease	OsCUL3a-associated molecular switches have functions in cell metabolism, cell death, and disease resistance.	 In oscul3a (oscullin3a) mutants, OsCUL3a-associated molecular switches are responsible for disrupted cell metabolism that leads to increased total lipid content in rice grain, a late accumulation of H2O2 in leaves, enhanced Xoo disease resistance, and suppressed panicle and first internode growth
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	disease resistance	OsCUL3a-associated molecular switches have functions in cell metabolism, cell death, and disease resistance.	 In oscul3a (oscullin3a) mutants, OsCUL3a-associated molecular switches are responsible for disrupted cell metabolism that leads to increased total lipid content in rice grain, a late accumulation of H2O2 in leaves, enhanced Xoo disease resistance, and suppressed panicle and first internode growth
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	 xoo 	OsCUL3a-associated molecular switches have functions in cell metabolism, cell death, and disease resistance.	 In oscul3a (oscullin3a) mutants, OsCUL3a-associated molecular switches are responsible for disrupted cell metabolism that leads to increased total lipid content in rice grain, a late accumulation of H2O2 in leaves, enhanced Xoo disease resistance, and suppressed panicle and first internode growth
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	lesion	OsCUL3a-associated molecular switches have functions in cell metabolism, cell death, and disease resistance.	 In oscul3a mutants, PRM confirmed up-regulated molecular switch proteins include lipoxygenases (CM-LOX1 and CM-LOX2), suggesting a novel connection between ferroptosis and rice lesion mimic formation
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	lesion mimic	OsCUL3a-associated molecular switches have functions in cell metabolism, cell death, and disease resistance.	 In oscul3a mutants, PRM confirmed up-regulated molecular switch proteins include lipoxygenases (CM-LOX1 and CM-LOX2), suggesting a novel connection between ferroptosis and rice lesion mimic formation
OsCUL3a|OsSPL88	Os02g0746000	LOC_Os02g51180	growth	OsSPL88 Encodes a Cullin Protein that Regulates Rice Growth and Development.	OsSPL88 Encodes a Cullin Protein that Regulates Rice Growth and Development.
OsCV	Os05g0575000	LOC_Os05g49940	chloroplast	Delaying chloroplast turnover increases water-deficit stress tolerance through the enhancement of nitrogen assimilation in rice.	The down-regulation of OsCV expression contributed to the maintenance of the chloroplast integrity under stress
OsCV	Os05g0575000	LOC_Os05g49940	stress	Delaying chloroplast turnover increases water-deficit stress tolerance through the enhancement of nitrogen assimilation in rice.	The down-regulation of OsCV expression contributed to the maintenance of the chloroplast integrity under stress
OsCV	Os05g0575000	LOC_Os05g49940	stress	Delaying chloroplast turnover increases water-deficit stress tolerance through the enhancement of nitrogen assimilation in rice.	Co-immunoprecipitation, intracellular co-localization, and bimolecular fluorescence demonstrated the in vivo interaction between OsCV and chloroplastic glutamine synthetase (OsGS2), affecting source-sink relationships of the plants under stress
OsCV	Os05g0575000	LOC_Os05g49940	chloroplast	Silencing of OsCV (chloroplast vesiculation) maintained photorespiration and N assimilation in rice plants grown under elevated CO2.	Co-immunoprecipitation of OsCV-interacting proteins suggested that, similar to its role in chloroplast protein turnover, OsCV acted as a scaffold, binding peroxisomal proteins
OsCW-ZF5	Os05g0371100	LOC_Os05g30790	zinc	Functional characterization of rice CW-domain containing zinc finger proteins involved in histone recognition.	Here, we identified three cysteine-tryptophan (CW)-domain containing zinc finger (ZF) proteins involved in histone recognition, namely OsCW-ZF3, OsCW-ZF5 and OsCW-ZF7
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	development	Functional characterization of rice CW-domain containing zinc finger proteins involved in histone recognition	Knockout of OsCW-ZF7 caused defective development of awns
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	zinc	Functional characterization of rice CW-domain containing zinc finger proteins involved in histone recognition	Here, we identified three cysteine-tryptophan (CW)-domain containing zinc finger (ZF) proteins involved in histone recognition, namely OsCW-ZF3, OsCW-ZF5 and OsCW-ZF7
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	grain	Wide Grain 7 increases grain width by enhancing H3K4me3<U+00A0>enrichment in the OsMADS1 promoter in rice (Oryza sativa L.).	The grain size of WG7 knockout mutants and WG7 overexpression lines indicated that WG7 is a positive regulator of grain size
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	grain	Wide Grain 7 increases grain width by enhancing H3K4me3<U+00A0>enrichment in the OsMADS1 promoter in rice (Oryza sativa L.).	EMSAs and ChIP-qPCR assay confirmed that WG7 directly bound to the promoter of OsMADS1, a grain size gene, and thereby significantly activated its expression
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	grain	Wide Grain 7 increases grain width by enhancing H3K4me3<U+00A0>enrichment in the OsMADS1 promoter in rice (Oryza sativa L.).	These findings demonstrated that WG7 upregulated OsMADS1 expression by directly binding to its promoter, enhanced histone H3K4me3<U+00A0>enrichment in the promoter and ultimately increased grain width
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	grain size	Wide Grain 7 increases grain width by enhancing H3K4me3<U+00A0>enrichment in the OsMADS1 promoter in rice (Oryza sativa L.).	The grain size of WG7 knockout mutants and WG7 overexpression lines indicated that WG7 is a positive regulator of grain size
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	grain size	Wide Grain 7 increases grain width by enhancing H3K4me3<U+00A0>enrichment in the OsMADS1 promoter in rice (Oryza sativa L.).	EMSAs and ChIP-qPCR assay confirmed that WG7 directly bound to the promoter of OsMADS1, a grain size gene, and thereby significantly activated its expression
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	fertility	Wide Grain 7 increases grain width by enhancing H3K4me3<U+00A0>enrichment in the OsMADS1 promoter in rice (Oryza sativa L.).	WG7 underwent directional selection due to the poor fertility of the nonfunctional mutant
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	grain width	Wide Grain 7 increases grain width by enhancing H3K4me3<U+00A0>enrichment in the OsMADS1 promoter in rice (Oryza sativa L.).	These findings demonstrated that WG7 upregulated OsMADS1 expression by directly binding to its promoter, enhanced histone H3K4me3<U+00A0>enrichment in the promoter and ultimately increased grain width
OsCW-ZF7|WG7	Os07g0669800|Os07g0669900	LOC_Os07g47360	transcriptional activator	Wide Grain 7 increases grain width by enhancing H3K4me3<U+00A0>enrichment in the OsMADS1 promoter in rice (Oryza sativa L.).	WG7 encodes a cysteine-tryptophan (CW) domain-containing transcriptional activator
OsCyb5	Os09g0338500	LOC_Os09g16920	growth	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	Disruption of this gene in Oscyb5 mutants reduced the seed reserve mobilization and seedling growth compared with wild-type (WT) in rice
OsCyb5	Os09g0338500	LOC_Os09g16920	grain	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	There were no significant differences of grain size, starch, protein and total soluble sugar content in the mature grains between Oscyb5 mutants and WT
OsCyb5	Os09g0338500	LOC_Os09g16920	seedling	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	Disruption of this gene in Oscyb5 mutants reduced the seed reserve mobilization and seedling growth compared with wild-type (WT) in rice
OsCyb5	Os09g0338500	LOC_Os09g16920	seed	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	Disruption of this gene in Oscyb5 mutants reduced the seed reserve mobilization and seedling growth compared with wild-type (WT) in rice
OsCyb5	Os09g0338500	LOC_Os09g16920	seed	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	However, the α-amylase activity in the germinating seeds of Oscyb5 mutants was significantly decreased compared to that of WT, and then, the starch and sugar mobilization and the glucose accumulation during seed germination were significantly decreased in Oscyb5 mutants
OsCyb5	Os09g0338500	LOC_Os09g16920	seed	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	Two elite haplotypes of OsCyb5 associated with the higher seed reserve mobilization percentage and its elite single nucleotide polymorphism variations were mainly existed in the INDICA and AUS accessions
OsCyb5	Os09g0338500	LOC_Os09g16920	seed	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	The natural variation of OsCyb5 contributing to seed reserve mobilization might be useful for the future rice breeding
OsCyb5	Os09g0338500	LOC_Os09g16920	starch	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	However, the α-amylase activity in the germinating seeds of Oscyb5 mutants was significantly decreased compared to that of WT, and then, the starch and sugar mobilization and the glucose accumulation during seed germination were significantly decreased in Oscyb5 mutants
OsCyb5	Os09g0338500	LOC_Os09g16920	seed germination	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	However, the α-amylase activity in the germinating seeds of Oscyb5 mutants was significantly decreased compared to that of WT, and then, the starch and sugar mobilization and the glucose accumulation during seed germination were significantly decreased in Oscyb5 mutants
OsCyb5	Os09g0338500	LOC_Os09g16920	grain size	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	There were no significant differences of grain size, starch, protein and total soluble sugar content in the mature grains between Oscyb5 mutants and WT
OsCyb5	Os09g0338500	LOC_Os09g16920	breeding	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	The natural variation of OsCyb5 contributing to seed reserve mobilization might be useful for the future rice breeding
OsCyb5	Os09g0338500	LOC_Os09g16920	sugar	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	There were no significant differences of grain size, starch, protein and total soluble sugar content in the mature grains between Oscyb5 mutants and WT
OsCyb5	Os09g0338500	LOC_Os09g16920	sugar	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	However, the α-amylase activity in the germinating seeds of Oscyb5 mutants was significantly decreased compared to that of WT, and then, the starch and sugar mobilization and the glucose accumulation during seed germination were significantly decreased in Oscyb5 mutants
OsCyb5	Os09g0338500	LOC_Os09g16920	seedling growth	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	Disruption of this gene in Oscyb5 mutants reduced the seed reserve mobilization and seedling growth compared with wild-type (WT) in rice
OsCYB5-2	Os10g0518200	LOC_Os10g37420	seedlings	An endoplasmic reticulum-localized cytochrome b (5) regulates high-affinity K(+) transport in response to salt stress in rice.	 Finally, overexpression of OsCYB5-2 increased OsHAK21-mediated K(+) transport and improved salt tolerance in rice seedlings
OsCYB5-2	Os10g0518200	LOC_Os10g37420	salt	An endoplasmic reticulum-localized cytochrome b (5) regulates high-affinity K(+) transport in response to salt stress in rice.	 Finally, overexpression of OsCYB5-2 increased OsHAK21-mediated K(+) transport and improved salt tolerance in rice seedlings
OsCYB5-2	Os10g0518200	LOC_Os10g37420	tolerance	An endoplasmic reticulum-localized cytochrome b (5) regulates high-affinity K(+) transport in response to salt stress in rice.	 Finally, overexpression of OsCYB5-2 increased OsHAK21-mediated K(+) transport and improved salt tolerance in rice seedlings
OsCYB5-2	Os10g0518200	LOC_Os10g37420	transporter	An endoplasmic reticulum-localized cytochrome b (5) regulates high-affinity K(+) transport in response to salt stress in rice.	 The association of OsCYB5-2 with the OsHAK21 transporter caused an increase in transporter activity by enhancing the apparent affinity for K(+)-binding but not Na(+)-binding
OsCYB5-2	Os10g0518200	LOC_Os10g37420	salt tolerance	An endoplasmic reticulum-localized cytochrome b (5) regulates high-affinity K(+) transport in response to salt stress in rice.	 Finally, overexpression of OsCYB5-2 increased OsHAK21-mediated K(+) transport and improved salt tolerance in rice seedlings
OsCYB5-2	Os10g0518200	LOC_Os10g37420	salt stress	An endoplasmic reticulum-localized cytochrome b 5 regulates high-affinity K + transport in response to salt stress in rice	An endoplasmic reticulum-localized cytochrome b 5 regulates high-affinity K + transport in response to salt stress in rice
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	growth	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 Moreover, plant growth and grain yield of rss5 and the OsCYBDOMG1 knockout mutant (cr-1) were significantly decreased compared to wild-type plants under normal conditions
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	grain	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	OsCYBDOMG1 positively regulates salt tolerance, plant growth, and grain yield by affecting ascorbate biosynthesis and redox state
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	grain	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 Moreover, plant growth and grain yield of rss5 and the OsCYBDOMG1 knockout mutant (cr-1) were significantly decreased compared to wild-type plants under normal conditions
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	grain	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 The elite haplotype of OsCYBDOMG1 associated with higher salt tolerance and grain width and weight was mainly existed in japonica varieties
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	grain	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 These results suggest that OsCYBDOMG1 plays an important role in the regulation of salt tolerance, plant growth, and grain yield in rice
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	grain yield	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	OsCYBDOMG1 positively regulates salt tolerance, plant growth, and grain yield by affecting ascorbate biosynthesis and redox state
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	grain yield	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 Moreover, plant growth and grain yield of rss5 and the OsCYBDOMG1 knockout mutant (cr-1) were significantly decreased compared to wild-type plants under normal conditions
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	grain yield	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 These results suggest that OsCYBDOMG1 plays an important role in the regulation of salt tolerance, plant growth, and grain yield in rice
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	salt	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	OsCYBDOMG1 positively regulates salt tolerance, plant growth, and grain yield by affecting ascorbate biosynthesis and redox state
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	salt	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 Mutations of OsCYBDOMG1 resulted in decreased ascorbic acid (AsA) content and AsA/DHA (dehydroascorbate) ratio, which led to increased H(2)O(2) accumulation and reduced salt tolerance
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	salt	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 The elite haplotype of OsCYBDOMG1 associated with higher salt tolerance and grain width and weight was mainly existed in japonica varieties
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	salt	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 These results suggest that OsCYBDOMG1 plays an important role in the regulation of salt tolerance, plant growth, and grain yield in rice
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	tolerance	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 Mutations of OsCYBDOMG1 resulted in decreased ascorbic acid (AsA) content and AsA/DHA (dehydroascorbate) ratio, which led to increased H(2)O(2) accumulation and reduced salt tolerance
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	tolerance	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 The elite haplotype of OsCYBDOMG1 associated with higher salt tolerance and grain width and weight was mainly existed in japonica varieties
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	yield	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	OsCYBDOMG1 positively regulates salt tolerance, plant growth, and grain yield by affecting ascorbate biosynthesis and redox state
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	yield	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 Moreover, plant growth and grain yield of rss5 and the OsCYBDOMG1 knockout mutant (cr-1) were significantly decreased compared to wild-type plants under normal conditions
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	yield	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 These results suggest that OsCYBDOMG1 plays an important role in the regulation of salt tolerance, plant growth, and grain yield in rice
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	salt tolerance	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	OsCYBDOMG1 positively regulates salt tolerance, plant growth, and grain yield by affecting ascorbate biosynthesis and redox state
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	salt tolerance	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 Mutations of OsCYBDOMG1 resulted in decreased ascorbic acid (AsA) content and AsA/DHA (dehydroascorbate) ratio, which led to increased H(2)O(2) accumulation and reduced salt tolerance
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	salt tolerance	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 The elite haplotype of OsCYBDOMG1 associated with higher salt tolerance and grain width and weight was mainly existed in japonica varieties
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	salt tolerance	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 These results suggest that OsCYBDOMG1 plays an important role in the regulation of salt tolerance, plant growth, and grain yield in rice
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	plant growth	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	OsCYBDOMG1 positively regulates salt tolerance, plant growth, and grain yield by affecting ascorbate biosynthesis and redox state
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	plant growth	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 Moreover, plant growth and grain yield of rss5 and the OsCYBDOMG1 knockout mutant (cr-1) were significantly decreased compared to wild-type plants under normal conditions
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	plant growth	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 These results suggest that OsCYBDOMG1 plays an important role in the regulation of salt tolerance, plant growth, and grain yield in rice
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	plasma membrane	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 The OsCYBDOMG1 gene was mainly expressed in young shoots and nodes, and the encoded protein was principally located in the plasma membrane and endoplasmic reticulum
OsCYBDOMG1	Os09g0557700	LOC_Os09g38520	grain width	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	 The elite haplotype of OsCYBDOMG1 associated with higher salt tolerance and grain width and weight was mainly existed in japonica varieties
OsCYCA2;1	Os12g0502300	LOC_Os12g31810	stomatal	A2-type Cyclin is required for the Asymmetric Entry Division in Rice Stomatal Development.	Cross-species complementation tests demonstrated that OsCYCA2;1 and OsCDKB1;1 could complement the defective stomatal phenotypes of Arabidopsis cyca2 and cdkb1 mutants, but also could suppress DNA endoduplication and cell enlargement
OsCYCD3;1	Os09g0111100	LOC_Os09g02360	cell division	D-type cyclin OsCYCD3;1 is involved in the maintenance of meristem activity to regulate branch formation in rice.	 Our results suggest that OsCYCD3;1 promotes branch formation, probably by regulating cell division to maintain the activities of the axillary meristem and the SAM
OsCYCD3;1	Os09g0111100	LOC_Os09g02360	meristem	D-type cyclin OsCYCD3;1 is involved in the maintenance of meristem activity to regulate branch formation in rice.	D-type cyclin OsCYCD3;1 is involved in the maintenance of meristem activity to regulate branch formation in rice.
OsCYCD3;1	Os09g0111100	LOC_Os09g02360	meristem	D-type cyclin OsCYCD3;1 is involved in the maintenance of meristem activity to regulate branch formation in rice.	 Our results suggest that OsCYCD3;1 promotes branch formation, probably by regulating cell division to maintain the activities of the axillary meristem and the SAM
OsCYCD3;1	Os09g0111100	LOC_Os09g02360	axillary meristem	D-type cyclin OsCYCD3;1 is involved in the maintenance of meristem activity to regulate branch formation in rice.	 Our results suggest that OsCYCD3;1 promotes branch formation, probably by regulating cell division to maintain the activities of the axillary meristem and the SAM
OsCYCP1;1	Os05g0398000	LOC_Os05g33040	phosphate	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.)	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.)
OsCYCP1;1	Os05g0398000	LOC_Os05g33040	phosphate starvation signaling	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.)	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.)
OsCYCP1;1	Os05g0398000	LOC_Os05g33040	phosphate starvation	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.)	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.)
OsCYCP1;1	Os05g0398000	LOC_Os05g33040	root	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.)	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.)
OsCYN	Os10g0471300	LOC_Os10g33270	temperature	Biochemical and structural properties of cyanases from Arabidopsis thaliana and Oryza sativa	Temperature had a similar influence on the activity of both cyanases, but pH had a differential impact on AtCYN and OsCYN activity
OsCYP-25|CYP19-3	Os09g0571400	LOC_Os09g39780	abiotic stress	Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses	Here, we report on the identification of a new cyclophilin gene OsCYP-25 (LOC_Os09 g39780) from rice which found to be upregulated in response to various abiotic stresses viz
OsCYP-25|CYP19-3	Os09g0571400	LOC_Os09g39780	abiotic stress	Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses	These findings suggest that OsCYP-25 might perform an important function in mediating wide range of cellular response under multiple abiotic stresses
OsCYP-25|CYP19-3	Os09g0571400	LOC_Os09g39780	abiotic stress	Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses	Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses
OsCYP-25|CYP19-3	Os09g0571400	LOC_Os09g39780	growth	Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses	The in silico analysis showed that OsCYP-25 interacts with different proteins involved in cell growth, differentiation, ribosome biogenesis, RNA metabolism, RNA editing, gene expression, signal transduction or stress response
OsCYP1	Os05g0200400	LOC_Os05g11130	detoxification	Identification of a Phase I mechanism gene of rice (OsCYP1) in response to isoproturon.	 These results further verified that OsCYP1 could enhance the degradation and detoxification of isoproturon
OsCYP1	Os05g0200400	LOC_Os05g11130	detoxification	Identification of a Phase I mechanism gene of rice (OsCYP1) in response to isoproturon.	 This study provides a fundamental basis for the detoxification and regulatory mechanisms of OsCYP1 in crops via enhancing the degradation and/or metabolism of herbicide residues
OsCYP1	Os05g0200400	LOC_Os05g11130	herbicide	Identification of a Phase I mechanism gene of rice (OsCYP1) in response to isoproturon.	 This study provides a fundamental basis for the detoxification and regulatory mechanisms of OsCYP1 in crops via enhancing the degradation and/or metabolism of herbicide residues
OsCYP19-4	Os06g0708400	LOC_Os06g49470	grain	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).
OsCYP19-4	Os06g0708400	LOC_Os06g49470	grain	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Rice plants overexpressing OsCYP19-4 showed cold-resistance phenotypes with significantly increased tiller and spike numbers, and consequently enhanced grain weight, compared with wild-type plants
OsCYP19-4	Os06g0708400	LOC_Os06g49470	tiller	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Rice plants overexpressing OsCYP19-4 showed cold-resistance phenotypes with significantly increased tiller and spike numbers, and consequently enhanced grain weight, compared with wild-type plants
OsCYP19-4	Os06g0708400	LOC_Os06g49470	tolerance	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).
OsCYP19-4	Os06g0708400	LOC_Os06g49470	tolerance	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Furthermore, the results point to the potential of manipulating OsCYP19-4 expression to enhance cold tolerance or to increase biomass
OsCYP19-4	Os06g0708400	LOC_Os06g49470	grain yield	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).
OsCYP19-4	Os06g0708400	LOC_Os06g49470	yield	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).
OsCYP19-4	Os06g0708400	LOC_Os06g49470	cold tolerance	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Furthermore, the results point to the potential of manipulating OsCYP19-4 expression to enhance cold tolerance or to increase biomass
OsCYP19-4	Os06g0708400	LOC_Os06g49470	cold stress	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).
OsCYP19-4	Os06g0708400	LOC_Os06g49470	cold stress	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	The study further demonstrated that the promoter of OsCYP19-4 was activated in response to cold stress
OsCYP19-4	Os06g0708400	LOC_Os06g49470	stress	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).
OsCYP19-4	Os06g0708400	LOC_Os06g49470	stress	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	The study further demonstrated that the promoter of OsCYP19-4 was activated in response to cold stress
OsCYP19-4	Os06g0708400	LOC_Os06g49470	biomass	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Furthermore, the results point to the potential of manipulating OsCYP19-4 expression to enhance cold tolerance or to increase biomass
OsCYP19-4	Os06g0708400	LOC_Os06g49470	grain weight	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa L.).	Rice plants overexpressing OsCYP19-4 showed cold-resistance phenotypes with significantly increased tiller and spike numbers, and consequently enhanced grain weight, compared with wild-type plants
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	lateral root	OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation	OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	seedling	Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed	Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	salt	Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed	Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	salt tolerance	Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed	Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	salinity	Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses	Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	auxin	OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation	Our results suggest that OsCYP2 participates in auxin signal transduction by interacting with OsSGT1
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	auxin	OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation	OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	abiotic stress	Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses	Expression of OsCyp2 enhances the ability of Escherichia coli to survive under diverse abiotic stresses viz
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	abiotic stress	Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses	Based on these results, we propose that OsCyp2 may serve as a 'suitable candidate' for raising transgenic plants for enhanced multiple abiotic stress tolerance
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	abiotic stress	Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses	Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	growth	Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses	OsCyp2 was able to complement the yeast mutant lacking native Cyp2 and also improved the growth of wild type yeast under above-mentioned stress conditions
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root	OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation	OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	Ectopic expression of OsCyp2-P imparted multiple abiotic stress tolerance to transgenic tobacco plants as evidenced by higher root length, shoot length, chlorophyll content, and K(+)/Na(+) ratio under stress conditions
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	shoot	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	Ectopic expression of OsCyp2-P imparted multiple abiotic stress tolerance to transgenic tobacco plants as evidenced by higher root length, shoot length, chlorophyll content, and K(+)/Na(+) ratio under stress conditions
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	homeostasis	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	homeostasis	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	OsCyp2-P operates via reactive oxygen species (ROS) scavenging and ion homeostasis and thus is a promising candidate gene for enhancing multiple abiotic stress tolerance in crop plants
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	tolerance	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	Ectopic expression of OsCyp2-P imparted multiple abiotic stress tolerance to transgenic tobacco plants as evidenced by higher root length, shoot length, chlorophyll content, and K(+)/Na(+) ratio under stress conditions
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	tolerance	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	The overall results suggest the explicit role of OsCyp2-P in bestowing multiple abiotic stress tolerance at the whole plant level
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	tolerance	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	OsCyp2-P operates via reactive oxygen species (ROS) scavenging and ion homeostasis and thus is a promising candidate gene for enhancing multiple abiotic stress tolerance in crop plants
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	stress	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	stress	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	Publicly available massively parallel signature sequencing (MPSS) and microarray data, besides our quantitative real time PCR (qRT-PCR) data suggest that transcript abundance of OsCyp2-P is regulated under different stress conditions in a developmental and organ specific manner
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	stress	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	Ectopic expression of OsCyp2-P imparted multiple abiotic stress tolerance to transgenic tobacco plants as evidenced by higher root length, shoot length, chlorophyll content, and K(+)/Na(+) ratio under stress conditions
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	stress	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	The overall results suggest the explicit role of OsCyp2-P in bestowing multiple abiotic stress tolerance at the whole plant level
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	stress	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	OsCyp2-P operates via reactive oxygen species (ROS) scavenging and ion homeostasis and thus is a promising candidate gene for enhancing multiple abiotic stress tolerance in crop plants
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root	Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling.	Moreover, knockdown of the OsIAA11 expression partially rescues the lrt2 mutant phenotype in lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	development	Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling.	Moreover, knockdown of the OsIAA11 expression partially rescues the lrt2 mutant phenotype in lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	lateral root	Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling.	Moreover, knockdown of the OsIAA11 expression partially rescues the lrt2 mutant phenotype in lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root development	Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling.	Moreover, knockdown of the OsIAA11 expression partially rescues the lrt2 mutant phenotype in lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 To better understand the molecular mechanisms underlying lateral root formation, an auxin-responsive gene OsCYP2 (Os02g0121300) was characterized from rice
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 T2 OsZFP-RNAi lines had significantly fewer lateral roots than did wild-type plants, which suggests a role for OsCYP2 and OsZFP in regulating lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	development	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 T2 OsZFP-RNAi lines had significantly fewer lateral roots than did wild-type plants, which suggests a role for OsCYP2 and OsZFP in regulating lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	development	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root development	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 T2 OsZFP-RNAi lines had significantly fewer lateral roots than did wild-type plants, which suggests a role for OsCYP2 and OsZFP in regulating lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root development	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	iaa	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	zinc	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 Yeast two-hybrid and glutathione S-transferase pull-down results confirmed that OsCYP2 interacted with a C2HC-type zinc finger protein (OsZFP, Os01g0252900) which is located in the rice nucleus
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	R protein	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 Yeast two-hybrid and glutathione S-transferase pull-down results confirmed that OsCYP2 interacted with a C2HC-type zinc finger protein (OsZFP, Os01g0252900) which is located in the rice nucleus
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	nucleus	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 Yeast two-hybrid and glutathione S-transferase pull-down results confirmed that OsCYP2 interacted with a C2HC-type zinc finger protein (OsZFP, Os01g0252900) which is located in the rice nucleus
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	lateral root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 To better understand the molecular mechanisms underlying lateral root formation, an auxin-responsive gene OsCYP2 (Os02g0121300) was characterized from rice
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	lateral root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 T2 OsZFP-RNAi lines had significantly fewer lateral roots than did wild-type plants, which suggests a role for OsCYP2 and OsZFP in regulating lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	lateral root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	IAA	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	 These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root	Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.	 In rice, a tryptophan-proline (W-P) cis-trans switch in transcription repressor protein OsIAA11 along with its associated cyclophilin LRT2 are essential components in a negative feedback gene regulation circuit that controls lateral root initiation in response to the plant hormone auxin
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	auxin	Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.	 In rice, a tryptophan-proline (W-P) cis-trans switch in transcription repressor protein OsIAA11 along with its associated cyclophilin LRT2 are essential components in a negative feedback gene regulation circuit that controls lateral root initiation in response to the plant hormone auxin
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	root initiation	Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.	 In rice, a tryptophan-proline (W-P) cis-trans switch in transcription repressor protein OsIAA11 along with its associated cyclophilin LRT2 are essential components in a negative feedback gene regulation circuit that controls lateral root initiation in response to the plant hormone auxin
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	R protein	Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.	 In rice, a tryptophan-proline (W-P) cis-trans switch in transcription repressor protein OsIAA11 along with its associated cyclophilin LRT2 are essential components in a negative feedback gene regulation circuit that controls lateral root initiation in response to the plant hormone auxin
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	lateral root	Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.	 In rice, a tryptophan-proline (W-P) cis-trans switch in transcription repressor protein OsIAA11 along with its associated cyclophilin LRT2 are essential components in a negative feedback gene regulation circuit that controls lateral root initiation in response to the plant hormone auxin
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	lateral root	Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.	 Here we present NMR studies that determine and independently validate these parameters for LRT2 catalysis of the W-P motif in OsIAA11, providing predictive power for understanding the role of this switch in the auxin-responsive circuit and the resulting lateral rootless phenotype in rice
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	transcription factor	Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.	Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	salt	Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.	Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	tolerance	Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.	Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.
OsCYP2|OsCyp2-P|LRT2	Os02g0121300	LOC_Os02g02890	salt tolerance	Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.	Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.
OsCYP20-2	Os05g0103200	LOC_Os05g01270	stress tolerance	The rice thylakoid lumenal cyclophilin OsCYP20-2 confers enhanced environmental stress tolerance in tobacco and Arabidopsis	The rice thylakoid lumenal cyclophilin OsCYP20-2 confers enhanced environmental stress tolerance in tobacco and Arabidopsis
OsCYP20-2	Os05g0103200	LOC_Os05g01270	chloroplast	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	A cypclophilin OsCYP20-2 with a variant interacts with SLR1 and OsFSD2 in nucleus and chloroplast respectively to integrate chilling tolerance and cell elongation
OsCYP20-2	Os05g0103200	LOC_Os05g01270	defense	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.
OsCYP20-2	Os05g0103200	LOC_Os05g01270	tolerance	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	A cypclophilin OsCYP20-2 with a variant interacts with SLR1 and OsFSD2 in nucleus and chloroplast respectively to integrate chilling tolerance and cell elongation
OsCYP20-2	Os05g0103200	LOC_Os05g01270	stress	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	Here, we reported a cyclophilin OsCYP20-2 was shown to function in stress response and cell elongation
OsCYP20-2	Os05g0103200	LOC_Os05g01270	stress	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	The loss-of function OsCYP20-2 mutant showed sensitive to chilling stress with accumulation extra ROS during chilling stress
OsCYP20-2	Os05g0103200	LOC_Os05g01270	stress	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	In chloroplast, the full-length OsCYP20-2 promotes OsFSD2 forming homodimer and enhances its activity, which eliminates the accumulation of ROS under chilling stress
OsCYP20-2	Os05g0103200	LOC_Os05g01270	nucleus	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	A cypclophilin OsCYP20-2 with a variant interacts with SLR1 and OsFSD2 in nucleus and chloroplast respectively to integrate chilling tolerance and cell elongation
OsCYP20-2	Os05g0103200	LOC_Os05g01270	cell elongation	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.
OsCYP20-2	Os05g0103200	LOC_Os05g01270	cell elongation	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	A cypclophilin OsCYP20-2 with a variant interacts with SLR1 and OsFSD2 in nucleus and chloroplast respectively to integrate chilling tolerance and cell elongation
OsCYP20-2	Os05g0103200	LOC_Os05g01270	cell elongation	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	Here, we reported a cyclophilin OsCYP20-2 was shown to function in stress response and cell elongation
OsCYP20-2	Os05g0103200	LOC_Os05g01270	cell elongation	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	In nucleus, OsCYP20-2 made conformation change of SLR1 to promote its degradation for cell elongation
OsCYP20-2	Os05g0103200	LOC_Os05g01270	chilling	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.
OsCYP20-2	Os05g0103200	LOC_Os05g01270	chilling	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	A cypclophilin OsCYP20-2 with a variant interacts with SLR1 and OsFSD2 in nucleus and chloroplast respectively to integrate chilling tolerance and cell elongation
OsCYP20-2	Os05g0103200	LOC_Os05g01270	chilling	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	The loss-of function OsCYP20-2 mutant showed sensitive to chilling stress with accumulation extra ROS during chilling stress
OsCYP20-2	Os05g0103200	LOC_Os05g01270	chilling	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	In chloroplast, the full-length OsCYP20-2 promotes OsFSD2 forming homodimer and enhances its activity, which eliminates the accumulation of ROS under chilling stress
OsCYP20-2	Os05g0103200	LOC_Os05g01270	stress response	Cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	Here, we reported a cyclophilin OsCYP20-2 was shown to function in stress response and cell elongation
OsCYP21-4	Os07g0476500	LOC_Os07g29390	oxidative stress	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	These results demonstrate that OsCYP21-4 is a novel Golgi-localized cyclophilin that plays a role in oxidative stress tolerance, possibly by regulating peroxidase activity
OsCYP21-4	Os07g0476500	LOC_Os07g29390	salinity	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	In addition, transgenic plants overexpressing OsCYP21-4 exhibited increased tolerance to salinity and hydrogen peroxide treatment, along with increased peroxidase activity
OsCYP21-4	Os07g0476500	LOC_Os07g29390	tolerance	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	In addition, transgenic plants overexpressing OsCYP21-4 exhibited increased tolerance to salinity and hydrogen peroxide treatment, along with increased peroxidase activity
OsCYP21-4	Os07g0476500	LOC_Os07g29390	oxidative	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	These results demonstrate that OsCYP21-4 is a novel Golgi-localized cyclophilin that plays a role in oxidative stress tolerance, possibly by regulating peroxidase activity
OsCYP21-4	Os07g0476500	LOC_Os07g29390	abiotic stress	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	OsCYP21-4 transcript levels increased in response to treatments with various abiotic stresses and the phytohormone abscisic acid, revealing its stress-responsiveness
OsCYP21-4	Os07g0476500	LOC_Os07g29390	stress	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	These results demonstrate that OsCYP21-4 is a novel Golgi-localized cyclophilin that plays a role in oxidative stress tolerance, possibly by regulating peroxidase activity
OsCYP21-4	Os07g0476500	LOC_Os07g29390	phytohormone	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	OsCYP21-4 transcript levels increased in response to treatments with various abiotic stresses and the phytohormone abscisic acid, revealing its stress-responsiveness
OsCYP21-4	Os07g0476500	LOC_Os07g29390	abscisic acid	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	OsCYP21-4 transcript levels increased in response to treatments with various abiotic stresses and the phytohormone abscisic acid, revealing its stress-responsiveness
OsCYP21-4	Os07g0476500	LOC_Os07g29390	stress tolerance	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	These results demonstrate that OsCYP21-4 is a novel Golgi-localized cyclophilin that plays a role in oxidative stress tolerance, possibly by regulating peroxidase activity
OsCYP21-4	Os07g0476500	LOC_Os07g29390	biotic stress	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	OsCYP21-4 transcript levels increased in response to treatments with various abiotic stresses and the phytohormone abscisic acid, revealing its stress-responsiveness
OsCYP51G1	Os11g0525200	LOC_Os11g32240	leaf	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	However, knockdown of OsCYP51G1 by RNAi did not elicit these BR deficiency-related phenotypes, such as dwarfism, erect leaves and small seeds, nor was the leaf lamina angle sensitive to brassinolide treatment
OsCYP51G1	Os11g0525200	LOC_Os11g32240	development	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development
OsCYP51G1	Os11g0525200	LOC_Os11g32240	pollen	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development
OsCYP51G1	Os11g0525200	LOC_Os11g32240	grain	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	Knockdown and knockout of OsCYP51G1 resulted in delayed flowering, impaired membrane integrity, abnormal pollen, and reduced grain yield, whereas OsCYP51G1 overexpression led to increased grain yield
OsCYP51G1	Os11g0525200	LOC_Os11g32240	seed	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development
OsCYP51G1	Os11g0525200	LOC_Os11g32240	grain yield	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	Knockdown and knockout of OsCYP51G1 resulted in delayed flowering, impaired membrane integrity, abnormal pollen, and reduced grain yield, whereas OsCYP51G1 overexpression led to increased grain yield
OsCYP51G1	Os11g0525200	LOC_Os11g32240	yield	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	Knockdown and knockout of OsCYP51G1 resulted in delayed flowering, impaired membrane integrity, abnormal pollen, and reduced grain yield, whereas OsCYP51G1 overexpression led to increased grain yield
OsCYP51G1	Os11g0525200	LOC_Os11g32240	BR	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	However, knockdown of OsCYP51G1 by RNAi did not elicit these BR deficiency-related phenotypes, such as dwarfism, erect leaves and small seeds, nor was the leaf lamina angle sensitive to brassinolide treatment
OsCYP51G1	Os11g0525200	LOC_Os11g32240	lamina	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	However, knockdown of OsCYP51G1 by RNAi did not elicit these BR deficiency-related phenotypes, such as dwarfism, erect leaves and small seeds, nor was the leaf lamina angle sensitive to brassinolide treatment
OsCYP51G1	Os11g0525200	LOC_Os11g32240	erect	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	However, knockdown of OsCYP51G1 by RNAi did not elicit these BR deficiency-related phenotypes, such as dwarfism, erect leaves and small seeds, nor was the leaf lamina angle sensitive to brassinolide treatment
OsCYP51G1	Os11g0525200	LOC_Os11g32240	seed development	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development	Obtusifoliol 14-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development
OsCYP51G3	Os05g0211100	LOC_Os05g12040	leaf	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	osa-miR1848 and OsCYP51G3 might have potential applications in rice breeding to modulate leaf angle, and the size and quality of seeds
OsCYP51G3	Os05g0211100	LOC_Os05g12040	pollen	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	Increased osa-miR1848 and decreased OsCYP51G3 expression reduced phytosterol and BR concentrations, and caused typical phenotypic changes related to phytosterol and BR deficiency, including dwarf plants, erect leaves, semi-sterile pollen grains, and shorter cells
OsCYP51G3	Os05g0211100	LOC_Os05g12040	development	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.
OsCYP51G3	Os05g0211100	LOC_Os05g12040	salt	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	Circadian expression of osa-miR1848 regulated the diurnal abundance of OsCYP51G3 transcript in developing organs, and the response of OsCYP51G3 to salt stress
OsCYP51G3	Os05g0211100	LOC_Os05g12040	salt stress	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	Circadian expression of osa-miR1848 regulated the diurnal abundance of OsCYP51G3 transcript in developing organs, and the response of OsCYP51G3 to salt stress
OsCYP51G3	Os05g0211100	LOC_Os05g12040	dwarf	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	Increased osa-miR1848 and decreased OsCYP51G3 expression reduced phytosterol and BR concentrations, and caused typical phenotypic changes related to phytosterol and BR deficiency, including dwarf plants, erect leaves, semi-sterile pollen grains, and shorter cells
OsCYP51G3	Os05g0211100	LOC_Os05g12040	stress	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	Circadian expression of osa-miR1848 regulated the diurnal abundance of OsCYP51G3 transcript in developing organs, and the response of OsCYP51G3 to salt stress
OsCYP51G3	Os05g0211100	LOC_Os05g12040	breeding	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	osa-miR1848 and OsCYP51G3 might have potential applications in rice breeding to modulate leaf angle, and the size and quality of seeds
OsCYP51G3	Os05g0211100	LOC_Os05g12040	BR	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	osa-miR1848 directs OsCYP51G3 mRNA cleavage to regulate phytosterol and BR biosynthesis in rice
OsCYP51G3	Os05g0211100	LOC_Os05g12040	BR	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	Increased osa-miR1848 and decreased OsCYP51G3 expression reduced phytosterol and BR concentrations, and caused typical phenotypic changes related to phytosterol and BR deficiency, including dwarf plants, erect leaves, semi-sterile pollen grains, and shorter cells
OsCYP51G3	Os05g0211100	LOC_Os05g12040	BR	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	We propose that osa-miR1848 regulates OsCYP51G3 expression posttranscriptionally, and mediates phytosterol and BR biosynthesis
OsCYP51G3	Os05g0211100	LOC_Os05g12040	erect	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	Increased osa-miR1848 and decreased OsCYP51G3 expression reduced phytosterol and BR concentrations, and caused typical phenotypic changes related to phytosterol and BR deficiency, including dwarf plants, erect leaves, semi-sterile pollen grains, and shorter cells
OsCYP51G3	Os05g0211100	LOC_Os05g12040	quality	Rice microRNA osa-miR1848 targets the obtusifoliol 14α-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	osa-miR1848 and OsCYP51G3 might have potential applications in rice breeding to modulate leaf angle, and the size and quality of seeds
OsCYP51H3	Os07g0464700	LOC_Os07g28110	growth	The putative obtusifoliol 14α-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.	The putative obtusifoliol 14α-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.
OsCYP51H3	Os07g0464700	LOC_Os07g28110	development	The putative obtusifoliol 14α-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.	 The RNA-seq results showed that OsCYP51H3 may affect the expression of a lot of genes related to rice development
OsCYP51H3	Os07g0464700	LOC_Os07g28110	development	The putative obtusifoliol 14α-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.	 These findings showed that OsCYP51H3 codes for a putative obtusifoliol 14α-demethylase involved in phytosterol and BR biosynthesis, and mediates rice development
OsCYP51H3	Os07g0464700	LOC_Os07g28110	BR	The putative obtusifoliol 14α-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.	 Metabolomic analysis of oscyp51H3 mutant indicated that OsCYP51H3 may also encode an obtusifoliol 14α-demethylase involved in phytosterol and BR biosynthesis, but possibly not that of triterpenes
OsCYP51H3	Os07g0464700	LOC_Os07g28110	BR	The putative obtusifoliol 14α-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.	 These findings showed that OsCYP51H3 codes for a putative obtusifoliol 14α-demethylase involved in phytosterol and BR biosynthesis, and mediates rice development
OsCYP51H3	Os07g0464700	LOC_Os07g28110	dwarf	The putative obtusifoliol 14α-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.	 Compared with wild type, the mutants oscyp51H3 and OsCYP51H3-RNAi showed dwarf phenotype, late flowering, erected leaves, lower seed-setting rate and smaller and shorter seeds
OsCYP51H3	Os07g0464700	LOC_Os07g28110	 BR 	The putative obtusifoliol 14α-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.	 Metabolomic analysis of oscyp51H3 mutant indicated that OsCYP51H3 may also encode an obtusifoliol 14α-demethylase involved in phytosterol and BR biosynthesis, but possibly not that of triterpenes
OsCYP51H3	Os07g0464700	LOC_Os07g28110	 BR 	The putative obtusifoliol 14α-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.	 These findings showed that OsCYP51H3 codes for a putative obtusifoliol 14α-demethylase involved in phytosterol and BR biosynthesis, and mediates rice development
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	growth	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	growth	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	Thus, our results suggest that OsCYP71D8L plays important roles in regulating rice growth and stress responses by coordinating GAs and CKs homeostasis, and it is useful to engineer stress-tolerant rice
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	panicle	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	We found that its gain-of-function mutant (cyp71d8l) and transgenic plants overexpressing OsCYP71D8L (OsCYP71D8L-OE) displayed similar phenotypes including dwarfed plant, reduced panicle length and grain number per panicle, and their endogenous GAs levels were notably decreased as compared to wild type (WT), respectively
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	grain	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	We found that its gain-of-function mutant (cyp71d8l) and transgenic plants overexpressing OsCYP71D8L (OsCYP71D8L-OE) displayed similar phenotypes including dwarfed plant, reduced panicle length and grain number per panicle, and their endogenous GAs levels were notably decreased as compared to wild type (WT), respectively
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	grain number	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	We found that its gain-of-function mutant (cyp71d8l) and transgenic plants overexpressing OsCYP71D8L (OsCYP71D8L-OE) displayed similar phenotypes including dwarfed plant, reduced panicle length and grain number per panicle, and their endogenous GAs levels were notably decreased as compared to wild type (WT), respectively
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	stress	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	stress	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	Thus, our results suggest that OsCYP71D8L plays important roles in regulating rice growth and stress responses by coordinating GAs and CKs homeostasis, and it is useful to engineer stress-tolerant rice
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	homeostasis	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	stress response	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.
OsCYP71D8L	Os02g0184900	LOC_Os02g09220	stress response	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	Thus, our results suggest that OsCYP71D8L plays important roles in regulating rice growth and stress responses by coordinating GAs and CKs homeostasis, and it is useful to engineer stress-tolerant rice
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	bacterial blight	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice	These results demonstrated that Oscyp71Z2 plays an important role in bacterial blight resistance by regulating the diterpenoid phytoalexin biosynthesis and H(2)O(2) generation
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	bacterial blight	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	disease	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice	We also showed that suppression of Oscyp71Z2 had no significantly effect on disease resistance to Xoo in rice
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	blight	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice	These results demonstrated that Oscyp71Z2 plays an important role in bacterial blight resistance by regulating the diterpenoid phytoalexin biosynthesis and H(2)O(2) generation
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	blight	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	xoo	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice	Overexpression of Oscyp71Z2 in rice enhanced resistance to Xoo at the booting stage
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	xoo	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice	We also showed that suppression of Oscyp71Z2 had no significantly effect on disease resistance to Xoo in rice
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	disease resistance	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice	We also showed that suppression of Oscyp71Z2 had no significantly effect on disease resistance to Xoo in rice
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	resistance	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	resistance	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	We've previously shown that the P450 gene CYP71Z2 enhances disease resistance to pathogens through regulation of phytoalexin biosynthesis in rice, though it remains unclear if auxin is involved in this process or not
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	resistance	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	Overexpression of CYP71Z2 in rice durably and stably increased resistance to Xoo, though no significant difference in disease resistance was detected between CYP71Z2-RNA interference (RNAi) rice and wild-type
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	disease	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	We've previously shown that the P450 gene CYP71Z2 enhances disease resistance to pathogens through regulation of phytoalexin biosynthesis in rice, though it remains unclear if auxin is involved in this process or not
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	disease	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	Overexpression of CYP71Z2 in rice durably and stably increased resistance to Xoo, though no significant difference in disease resistance was detected between CYP71Z2-RNA interference (RNAi) rice and wild-type
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	disease resistance	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	We've previously shown that the P450 gene CYP71Z2 enhances disease resistance to pathogens through regulation of phytoalexin biosynthesis in rice, though it remains unclear if auxin is involved in this process or not
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	disease resistance	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	Overexpression of CYP71Z2 in rice durably and stably increased resistance to Xoo, though no significant difference in disease resistance was detected between CYP71Z2-RNA interference (RNAi) rice and wild-type
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	auxin	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	auxin	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	We've previously shown that the P450 gene CYP71Z2 enhances disease resistance to pathogens through regulation of phytoalexin biosynthesis in rice, though it remains unclear if auxin is involved in this process or not
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	blight	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	auxin biosynthesis	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.
Oscyp71Z2|CYP71Z2	Os07g0217600	LOC_Os07g11739	bacterial blight	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.	Overexpressing CYP71Z2 Enhances Resistance to Bacterial Blight by Suppressing Auxin Biosynthesis in Rice.
OsCYP84A	Os10g0320100	LOC_Os10g17260	growth	A Rice Cytochrome P450OsCYP84AThat May Interact with the UV Tolerance Pathway	Rice transformants in which OsCYP84A expression was suppressed by the antisense gene showed apparent growth retardation with obvious symptoms of damage on the plant bodies under UV-B irradiation, although no phenotypic alteration occurred under normal growth conditions
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	pollen	Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner	The mutant exhibits the defects in cell elongation and pollen germination, which can be complemented by the wild type OsCYP96B4 and be rescued by remobilization of the Ds element with the presence of the transposase Activator (Ac)
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	height	Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner	The oscyp96b4 mutant phenotype could not be rescued by all the tested phytohormones and it was found that OsCYP96B4 reduced plant height in a transcript dosage dependent manner
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	height	Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner	Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	dwarf	Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner	METHODOLOGY/PRINCIPAL FINDINGS: Here, we report a novel semi-dwarf rice mutant, in which a single copy of transposon dissociator (Ds) was inserted into the gene OsCYP96B4 (Oryza sativa Cytochrome P450 96B4)
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	dwarf	Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner	CONCLUSIONS/SIGNIFICANCE: The oscyp96b4 mutant is a novel rice semi-dwarf mutant
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	phytohormone	Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner	The oscyp96b4 mutant phenotype could not be rescued by all the tested phytohormones and it was found that OsCYP96B4 reduced plant height in a transcript dosage dependent manner
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	cell elongation	Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner	The mutant exhibits the defects in cell elongation and pollen germination, which can be complemented by the wild type OsCYP96B4 and be rescued by remobilization of the Ds element with the presence of the transposase Activator (Ac)
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	cell elongation	Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner	Our data suggest that OsCYP96B4 might be involved in lipid metabolism and regulate cell elongation
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	cell wall	BRITTLE SHEATH1 encoding OsCYP96B4 is involved in secondary cell wall formation in rice.	BRITTLE SHEATH1 encoding OsCYP96B4 is involved in secondary cell wall formation in rice.
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	development	Systems Metabolic Alteration in a Semi-Dwarf Rice Mutant Induced by OsCYP96B4 Gene Mutation.	 The present study will provide essential information for the OsCYP96B4 gene function analysis and may serve as valuable reference data for the development of new semi-dwarf mutants
OsCYP96B4|BSH1|SD37|OsDSS1	Os03g0140400	LOC_Os03g04680	map-based cloning	Curled Flag Leaf 2, Encoding a Cytochrome P450 Protein, Regulated by the Transcription Factor Roc5, Influences Flag Leaf Development in Rice	 Map-based cloning reveals that CFL2 encodes a cytochrome P450 protein and corresponds to the previously reported OsCYP96B4
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	growth	Analysis of the rice SHORT-ROOT5 gene revealed functional diversification of plant neutral/alkaline invertase family	We previously described a rice mutant, srt5, which exhibits extremely stunted post-embryonic root growth that is rescuable by metabolizable sugars
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	root development	Analysis of the rice SHORT-ROOT5 gene revealed functional diversification of plant neutral/alkaline invertase family	Sucrose levels in srt5 root cells were elevated, consistent with a crucial role for SRT5 in cytosolic sucrose cleavage at early root developmental stages
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	root development	Analysis of the rice SHORT-ROOT5 gene revealed functional diversification of plant neutral/alkaline invertase family	These results suggest that SRT5 is the key isoform of Inv-Ns required for carbon and energy supply during early root development
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	root	Analysis of the rice SHORT-ROOT5 gene revealed functional diversification of plant neutral/alkaline invertase family	We previously described a rice mutant, srt5, which exhibits extremely stunted post-embryonic root growth that is rescuable by metabolizable sugars
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	root	Analysis of the rice SHORT-ROOT5 gene revealed functional diversification of plant neutral/alkaline invertase family	Sucrose levels in srt5 root cells were elevated, consistent with a crucial role for SRT5 in cytosolic sucrose cleavage at early root developmental stages
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	root	Analysis of the rice SHORT-ROOT5 gene revealed functional diversification of plant neutral/alkaline invertase family	These results suggest that SRT5 is the key isoform of Inv-Ns required for carbon and energy supply during early root development
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	growth	OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.)	Exogenously supplying glucose could rescue the root growth defects of the Oscyt-inv1 mutant
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	root	OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.)	Exogenously supplying glucose could rescue the root growth defects of the Oscyt-inv1 mutant
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	root	OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.)	These results indicated that OsCyt-inv1 played important roles in root cell development and reproductivity in rice
OsCYT-INV1|SRT5	Os02g0550600	LOC_Os02g34560	root	OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.)	OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.)
OscZOG1	Os04g0271700	LOC_Os04g20330	root	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.
OscZOG1	Os04g0271700	LOC_Os04g20330	root	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	We found that OscZOG1 was preferentially expressed in shoot and root meristematic tissues and nascent organs
OscZOG1	Os04g0271700	LOC_Os04g20330	shoot	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.
OscZOG1	Os04g0271700	LOC_Os04g20330	shoot	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	We found that OscZOG1 was preferentially expressed in shoot and root meristematic tissues and nascent organs
OscZOG1	Os04g0271700	LOC_Os04g20330	panicle	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In shoots, knockdown of OscZOG1 expression by RNA interference significantly improved tillering, panicle branching, grain number per panicle and seed size, which are important agronomic traits for grain yield
OscZOG1	Os04g0271700	LOC_Os04g20330	panicle	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In this study, our findings demonstrate the feasibility of improving the critical yield-determinant agronomic traits, including tiller number, panicle branches, total grain number per panicle and grain weight by down-regulating the expression level of OscZOG1
OscZOG1	Os04g0271700	LOC_Os04g20330	grain	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In shoots, knockdown of OscZOG1 expression by RNA interference significantly improved tillering, panicle branching, grain number per panicle and seed size, which are important agronomic traits for grain yield
OscZOG1	Os04g0271700	LOC_Os04g20330	grain	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In this study, our findings demonstrate the feasibility of improving the critical yield-determinant agronomic traits, including tiller number, panicle branches, total grain number per panicle and grain weight by down-regulating the expression level of OscZOG1
OscZOG1	Os04g0271700	LOC_Os04g20330	tiller	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In this study, our findings demonstrate the feasibility of improving the critical yield-determinant agronomic traits, including tiller number, panicle branches, total grain number per panicle and grain weight by down-regulating the expression level of OscZOG1
OscZOG1	Os04g0271700	LOC_Os04g20330	seed	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In shoots, knockdown of OscZOG1 expression by RNA interference significantly improved tillering, panicle branching, grain number per panicle and seed size, which are important agronomic traits for grain yield
OscZOG1	Os04g0271700	LOC_Os04g20330	development	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.
OscZOG1	Os04g0271700	LOC_Os04g20330	grain yield	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In shoots, knockdown of OscZOG1 expression by RNA interference significantly improved tillering, panicle branching, grain number per panicle and seed size, which are important agronomic traits for grain yield
OscZOG1	Os04g0271700	LOC_Os04g20330	grain number	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In shoots, knockdown of OscZOG1 expression by RNA interference significantly improved tillering, panicle branching, grain number per panicle and seed size, which are important agronomic traits for grain yield
OscZOG1	Os04g0271700	LOC_Os04g20330	grain number	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In this study, our findings demonstrate the feasibility of improving the critical yield-determinant agronomic traits, including tiller number, panicle branches, total grain number per panicle and grain weight by down-regulating the expression level of OscZOG1
OscZOG1	Os04g0271700	LOC_Os04g20330	yield	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In shoots, knockdown of OscZOG1 expression by RNA interference significantly improved tillering, panicle branching, grain number per panicle and seed size, which are important agronomic traits for grain yield
OscZOG1	Os04g0271700	LOC_Os04g20330	seed size	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In shoots, knockdown of OscZOG1 expression by RNA interference significantly improved tillering, panicle branching, grain number per panicle and seed size, which are important agronomic traits for grain yield
OscZOG1	Os04g0271700	LOC_Os04g20330	tiller number	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In this study, our findings demonstrate the feasibility of improving the critical yield-determinant agronomic traits, including tiller number, panicle branches, total grain number per panicle and grain weight by down-regulating the expression level of OscZOG1
OscZOG1	Os04g0271700	LOC_Os04g20330	grain weight	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	In this study, our findings demonstrate the feasibility of improving the critical yield-determinant agronomic traits, including tiller number, panicle branches, total grain number per panicle and grain weight by down-regulating the expression level of OscZOG1
OscZOG1	Os04g0271700	LOC_Os04g20330	root meristem	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	We found that OscZOG1 was preferentially expressed in shoot and root meristematic tissues and nascent organs
OsD-LDH	Os07g0163000	LOC_Os07g06890	growth	Silencing of D-Lactate Dehydrogenase Impedes Glyoxalase System and Leads to Methylglyoxal Accumulation and Growth Inhibition in Rice.	Under methylglyoxal treatment, silencing of OsD-LDH in rice resulted in the accumulation of methylglyoxal and D-lactate, the decrease of reduced glutathione in leaves, and ultimately severe growth inhibition
OsD-LDH	Os07g0163000	LOC_Os07g06890	growth	Silencing of D-Lactate Dehydrogenase Impedes Glyoxalase System and Leads to Methylglyoxal Accumulation and Growth Inhibition in Rice.	However, the silencing of OsD-LDH did not affect the growth under photorespiration conditions
OsD-LDH	Os07g0163000	LOC_Os07g06890	salt	Silencing of D-Lactate Dehydrogenase Impedes Glyoxalase System and Leads to Methylglyoxal Accumulation and Growth Inhibition in Rice.	Moreover, the detached leaves of OsD-LDH RNAi plants were more sensitive to salt stress
OsD-LDH	Os07g0163000	LOC_Os07g06890	salt stress	Silencing of D-Lactate Dehydrogenase Impedes Glyoxalase System and Leads to Methylglyoxal Accumulation and Growth Inhibition in Rice.	Moreover, the detached leaves of OsD-LDH RNAi plants were more sensitive to salt stress
OsD-LDH	Os07g0163000	LOC_Os07g06890	stress	Silencing of D-Lactate Dehydrogenase Impedes Glyoxalase System and Leads to Methylglyoxal Accumulation and Growth Inhibition in Rice.	Moreover, the detached leaves of OsD-LDH RNAi plants were more sensitive to salt stress
OsD-LDH2	Os07g0187200|Os07g0187350	LOC_Os07g08950	growth	A D-lactate dehydrogenase from rice is involved in conferring tolerance to multiple abiotic stresses by maintaining cellular homeostasis	Overall, OsD-LDH2 emerged as a promising candidate which can open a new direction for engineering stress tolerant crop varieties by maintaining their growth and yield in unfavorable conditions
OsD-LDH2	Os07g0187200|Os07g0187350	LOC_Os07g08950	tolerance	A D-lactate dehydrogenase from rice is involved in conferring tolerance to multiple abiotic stresses by maintaining cellular homeostasis	Heterologous overexpression of OsD-LDH2 provides tolerance against multiple abiotic stresses in E
OsD-LDH2	Os07g0187200|Os07g0187350	LOC_Os07g08950	yield	A D-lactate dehydrogenase from rice is involved in conferring tolerance to multiple abiotic stresses by maintaining cellular homeostasis	Overall, OsD-LDH2 emerged as a promising candidate which can open a new direction for engineering stress tolerant crop varieties by maintaining their growth and yield in unfavorable conditions
OsD-LDH2	Os07g0187200|Os07g0187350	LOC_Os07g08950	abiotic stress	A D-lactate dehydrogenase from rice is involved in conferring tolerance to multiple abiotic stresses by maintaining cellular homeostasis	Heterologous overexpression of OsD-LDH2 provides tolerance against multiple abiotic stresses in E
OsD-LDH2	Os07g0187200|Os07g0187350	LOC_Os07g08950	abiotic stress	A D-lactate dehydrogenase from rice is involved in conferring tolerance to multiple abiotic stresses by maintaining cellular homeostasis	The analysis of D-LDH mutant and OsD-LDH2 overexpressing transgenic plants uncovered the crucial role of D-LDH in mitigation of abiotic stresses
OsD-LDH2	Os07g0187200|Os07g0187350	LOC_Os07g08950	stress	A D-lactate dehydrogenase from rice is involved in conferring tolerance to multiple abiotic stresses by maintaining cellular homeostasis	Overall, OsD-LDH2 emerged as a promising candidate which can open a new direction for engineering stress tolerant crop varieties by maintaining their growth and yield in unfavorable conditions
OsD-LDH2	Os07g0187200|Os07g0187350	LOC_Os07g08950	biotic stress	A D-lactate dehydrogenase from rice is involved in conferring tolerance to multiple abiotic stresses by maintaining cellular homeostasis	Heterologous overexpression of OsD-LDH2 provides tolerance against multiple abiotic stresses in E
OsD-LDH2	Os07g0187200|Os07g0187350	LOC_Os07g08950	biotic stress	A D-lactate dehydrogenase from rice is involved in conferring tolerance to multiple abiotic stresses by maintaining cellular homeostasis	The analysis of D-LDH mutant and OsD-LDH2 overexpressing transgenic plants uncovered the crucial role of D-LDH in mitigation of abiotic stresses
OsDA1	Os06g0182500	LOC_Os06g08400	grain size	Ubiquitin Specific Protease 15 Has an Important Role in Regulating Grain Width and Size in Rice	Ubiquitin Specific Protease 15 Has an Important Role in Regulating Grain Width and Size in Rice
OsDBH	Os04g0486800	LOC_Os04g40970	salinity stress	microRNAs targeting DEAD-box helicases are involved in salinity stress response in rice (Oryza sativa L.).	Expression profiles of OsABP, OsDBH and OsDSHCTgenes in response to early salinity stress
OsDBH	Os04g0486800	LOC_Os04g40970	stress	microRNAs targeting DEAD-box helicases are involved in salinity stress response in rice (Oryza sativa L.).	Expression profiles of OsABP, OsDBH and OsDSHCTgenes in response to early salinity stress
OsDCL1a	Os03g0121800	LOC_Os03g02970	seedling	Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice	Strong loss of function of OsDCL1IR transformants that expressed inverted repeats of OsDCL1 resulted in developmental arrest at the seedling stage, and weak loss of function of OsDCL1IR transformants caused pleiotropic developmental defects
OsDCL1a	Os03g0121800	LOC_Os03g02970	resistance	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
OsDCL1a	Os03g0121800	LOC_Os03g02970	defense	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	Accumulation of hydrogen peroxide and cell death were observed in the contact cells with infectious hyphae, revealing that silencing of OsDCL1 activated cellular defense responses
OsDCL1a	Os03g0121800	LOC_Os03g02970	defense	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	Moreover, silencing of OsDCL1 activated the constitutive expression of defense related genes
OsDCL1a	Os03g0121800	LOC_Os03g02970	defense response	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	Accumulation of hydrogen peroxide and cell death were observed in the contact cells with infectious hyphae, revealing that silencing of OsDCL1 activated cellular defense responses
OsDCL1a	Os03g0121800	LOC_Os03g02970	disease	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	In this study, we reported the function of OsDCL1 in the immunity to rice blast, the devastating disease caused by the fungal pathogen, Magnaporthe oryzae
OsDCL1a	Os03g0121800	LOC_Os03g02970	blast	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	Expression profiling demonstrated that different OsDCLs responded dynamically and OsDCL1 reduced its expression upon the challenge of rice blast pathogen
OsDCL1a	Os03g0121800	LOC_Os03g02970	blast	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	In OsDCL1 RNAi lines, 12 differentially expressed miRNAs were identified, of which 5 and 7 were down- and up-regulated, respectively, indicating that miRNAs responded dynamically in the interaction between rice and rice blast
OsDCL1a	Os03g0121800	LOC_Os03g02970	magnaporthe oryzae	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
OsDCL1a	Os03g0121800	LOC_Os03g02970	magnaporthe oryzae	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	In this study, we reported the function of OsDCL1 in the immunity to rice blast, the devastating disease caused by the fungal pathogen, Magnaporthe oryzae
OsDCL1a	Os03g0121800	LOC_Os03g02970	cell death	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	Accumulation of hydrogen peroxide and cell death were observed in the contact cells with infectious hyphae, revealing that silencing of OsDCL1 activated cellular defense responses
OsDCL1a	Os03g0121800	LOC_Os03g02970	immunity	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	In this study, we reported the function of OsDCL1 in the immunity to rice blast, the devastating disease caused by the fungal pathogen, Magnaporthe oryzae
OsDCL1a	Os03g0121800	LOC_Os03g02970	resistance	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.
OsDCL1a	Os03g0121800	LOC_Os03g02970	resistance	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	Activation-tagged Osdcl1a (Osdcl1a-Ac) rice mutants were examined for resistance to pathogen infection
OsDCL1a	Os03g0121800	LOC_Os03g02970	disease	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.
OsDCL1a	Os03g0121800	LOC_Os03g02970	disease resistance	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.
OsDCL1a	Os03g0121800	LOC_Os03g02970	immunity	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	These findings provide a basis to understand the molecular mechanisms through which OsDCL1a mediates rice immunity
OsDCL1a	Os03g0121800	LOC_Os03g02970	pathogen	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	Activation-tagged Osdcl1a (Osdcl1a-Ac) rice mutants were examined for resistance to pathogen infection
OsDCL1a	Os03g0121800	LOC_Os03g02970	defence	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	Activation of OsDCL1a represses the pathogen-inducible host defence response and negatively regulates diterpenoid phytoalexin production
OsDCL1a	Os03g0121800	LOC_Os03g02970	defence response	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	Activation of OsDCL1a represses the pathogen-inducible host defence response and negatively regulates diterpenoid phytoalexin production
OsDCL3a	Os01g0909200	LOC_Os01g68120	brassinosteroid	Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice	OsDCL3a directly targets genes involved in gibberellin and brassinosteroid homeostasis; OsDCL3a deficiency may affect these genes, thus causing the phenotypes of dwarfism and enlarged flag leaf angle
OsDCL3a	Os01g0909200	LOC_Os01g68120	dwarf	Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice	Impairing OsDCL3a expression by RNA interference caused phenotypes affecting important agricultural traits; these phenotypes include dwarfism, larger flag leaf angle, and fewer secondary branches
OsDCL3a	Os01g0909200	LOC_Os01g68120	dwarf	Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice	OsDCL3a directly targets genes involved in gibberellin and brassinosteroid homeostasis; OsDCL3a deficiency may affect these genes, thus causing the phenotypes of dwarfism and enlarged flag leaf angle
OsDCL3a	Os01g0909200	LOC_Os01g68120	leaf	Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice	Impairing OsDCL3a expression by RNA interference caused phenotypes affecting important agricultural traits; these phenotypes include dwarfism, larger flag leaf angle, and fewer secondary branches
OsDCL3a	Os01g0909200	LOC_Os01g68120	leaf	Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice	OsDCL3a directly targets genes involved in gibberellin and brassinosteroid homeostasis; OsDCL3a deficiency may affect these genes, thus causing the phenotypes of dwarfism and enlarged flag leaf angle
OsDCL3a	Os01g0909200	LOC_Os01g68120	homeostasis	Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice	OsDCL3a directly targets genes involved in gibberellin and brassinosteroid homeostasis; OsDCL3a deficiency may affect these genes, thus causing the phenotypes of dwarfism and enlarged flag leaf angle
OsDCL3a	Os01g0909200	LOC_Os01g68120	gibberellin	Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice	OsDCL3a directly targets genes involved in gibberellin and brassinosteroid homeostasis; OsDCL3a deficiency may affect these genes, thus causing the phenotypes of dwarfism and enlarged flag leaf angle
OsDCL3b	Os10g0485600	LOC_Os10g34430	pollen	OsDCL3b affects grain yield and quality in rice.	Here we reported that knockdown of OsDCL3b led to reduced pollen fertility, seed setting rate, and decreased grain yield but increased grain quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	panicle	OsDCL3b affects grain yield and quality in rice.	In rice, the biochemical function of OsDCL3b is known to process 24-nucleotide panicle phased small RNAs, however, its phenotypic functions are unclear
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain	OsDCL3b affects grain yield and quality in rice.	OsDCL3b affects grain yield and quality in rice.
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain	OsDCL3b affects grain yield and quality in rice.	We reported that knockdown of OsDCL3b decreased grain yield but increased grain quality in rice, which is helpful for molecular breeding in crops
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain	OsDCL3b affects grain yield and quality in rice.	Here we reported that knockdown of OsDCL3b led to reduced pollen fertility, seed setting rate, and decreased grain yield but increased grain quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain	OsDCL3b affects grain yield and quality in rice.	Thus, our results show that knockdown of OsDCL3b will affect the biogenesis of small RNAs, which is involved in regulating the transcription of mRNA genes, and consequently influence the grain yield and quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	seed	OsDCL3b affects grain yield and quality in rice.	Here we reported that knockdown of OsDCL3b led to reduced pollen fertility, seed setting rate, and decreased grain yield but increased grain quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain yield	OsDCL3b affects grain yield and quality in rice.	OsDCL3b affects grain yield and quality in rice.
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain yield	OsDCL3b affects grain yield and quality in rice.	We reported that knockdown of OsDCL3b decreased grain yield but increased grain quality in rice, which is helpful for molecular breeding in crops
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain yield	OsDCL3b affects grain yield and quality in rice.	Here we reported that knockdown of OsDCL3b led to reduced pollen fertility, seed setting rate, and decreased grain yield but increased grain quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain yield	OsDCL3b affects grain yield and quality in rice.	Thus, our results show that knockdown of OsDCL3b will affect the biogenesis of small RNAs, which is involved in regulating the transcription of mRNA genes, and consequently influence the grain yield and quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	yield	OsDCL3b affects grain yield and quality in rice.	OsDCL3b affects grain yield and quality in rice.
OsDCL3b	Os10g0485600	LOC_Os10g34430	yield	OsDCL3b affects grain yield and quality in rice.	We reported that knockdown of OsDCL3b decreased grain yield but increased grain quality in rice, which is helpful for molecular breeding in crops
OsDCL3b	Os10g0485600	LOC_Os10g34430	yield	OsDCL3b affects grain yield and quality in rice.	Here we reported that knockdown of OsDCL3b led to reduced pollen fertility, seed setting rate, and decreased grain yield but increased grain quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	yield	OsDCL3b affects grain yield and quality in rice.	Thus, our results show that knockdown of OsDCL3b will affect the biogenesis of small RNAs, which is involved in regulating the transcription of mRNA genes, and consequently influence the grain yield and quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	breeding	OsDCL3b affects grain yield and quality in rice.	We reported that knockdown of OsDCL3b decreased grain yield but increased grain quality in rice, which is helpful for molecular breeding in crops
OsDCL3b	Os10g0485600	LOC_Os10g34430	quality	OsDCL3b affects grain yield and quality in rice.	OsDCL3b affects grain yield and quality in rice.
OsDCL3b	Os10g0485600	LOC_Os10g34430	quality	OsDCL3b affects grain yield and quality in rice.	We reported that knockdown of OsDCL3b decreased grain yield but increased grain quality in rice, which is helpful for molecular breeding in crops
OsDCL3b	Os10g0485600	LOC_Os10g34430	quality	OsDCL3b affects grain yield and quality in rice.	Here we reported that knockdown of OsDCL3b led to reduced pollen fertility, seed setting rate, and decreased grain yield but increased grain quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	quality	OsDCL3b affects grain yield and quality in rice.	Thus, our results show that knockdown of OsDCL3b will affect the biogenesis of small RNAs, which is involved in regulating the transcription of mRNA genes, and consequently influence the grain yield and quality in rice
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain quality	OsDCL3b affects grain yield and quality in rice.	We reported that knockdown of OsDCL3b decreased grain yield but increased grain quality in rice, which is helpful for molecular breeding in crops
OsDCL3b	Os10g0485600	LOC_Os10g34430	grain quality	OsDCL3b affects grain yield and quality in rice.	Here we reported that knockdown of OsDCL3b led to reduced pollen fertility, seed setting rate, and decreased grain yield but increased grain quality in rice
OsDDB1	Os05g0592400	LOC_Os05g51480	 ABA 	The De-Etiolated 1 Homolog of Arabidopsis Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice.	Using yeast two-hybrid (Y2H) and bimolecular fluorescence complementation assays, we determined that OsDET1 interacts physically with DAMAGED-SPECIFIC DNA-BINDING PROTEIN1 (OsDDB1) and CONSTITUTIVE PHOTOMORPHOGENIC10 (COP10); DET1- and DDB1-ASSOCIATED1 binds to the ABA receptors OsPYL5 and OsDDB1
OsDDB1	Os05g0592400	LOC_Os05g51480	ABA	The De-Etiolated 1 Homolog of Arabidopsis Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice.	Using yeast two-hybrid (Y2H) and bimolecular fluorescence complementation assays, we determined that OsDET1 interacts physically with DAMAGED-SPECIFIC DNA-BINDING PROTEIN1 (OsDDB1) and CONSTITUTIVE PHOTOMORPHOGENIC10 (COP10); DET1- and DDB1-ASSOCIATED1 binds to the ABA receptors OsPYL5 and OsDDB1
OsDDB1	Os05g0592400	LOC_Os05g51480	flavonoid	Mutations in OsDET1, OsCOP10, and OsDDB1 confer embryonic lethality and alter flavonoid accumulation in Rice (Oryza sativa L.) seed.	Mutations in OsDET1, OsCOP10, and OsDDB1 confer embryonic lethality and alter flavonoid accumulation in Rice (Oryza sativa L.) seed.
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 We further analyzed the OsDDM1b T-DNA insertion loss-of-function of mutant, which exhibited dwarfism, smaller organ size, and shorter and wider grain size than the wild type (Hwayoung, HY), yet no difference in 1,000-grain weight
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Consistent with the grain size, the outer parenchyma cell layers of lemma in osddm1b developed more cells with decreased size
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 OsDDM1b encoded a nucleus, membrane-localized protein and was distributed predominately in young spikelets and seeds, asserting its role in grain size
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 We detected changes in the expression levels of the BR signaling pathway and feedback-inhibited genes with and without exogenous BR application, and the alterations of expression were also observed in grain size-related genes in the osddm1b
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Altogether, our results suggest that OsDDM1b plays a crucial role in grain size via influencing cell proliferation and regulating BR signaling and homeostasis
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain size	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain size	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 We further analyzed the OsDDM1b T-DNA insertion loss-of-function of mutant, which exhibited dwarfism, smaller organ size, and shorter and wider grain size than the wild type (Hwayoung, HY), yet no difference in 1,000-grain weight
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain size	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Consistent with the grain size, the outer parenchyma cell layers of lemma in osddm1b developed more cells with decreased size
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain size	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 OsDDM1b encoded a nucleus, membrane-localized protein and was distributed predominately in young spikelets and seeds, asserting its role in grain size
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain size	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 We detected changes in the expression levels of the BR signaling pathway and feedback-inhibited genes with and without exogenous BR application, and the alterations of expression were also observed in grain size-related genes in the osddm1b
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain size	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Altogether, our results suggest that OsDDM1b plays a crucial role in grain size via influencing cell proliferation and regulating BR signaling and homeostasis
OsDDM1b	Os03g0722400	LOC_Os03g51230	brassinosteroid	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.
OsDDM1b	Os03g0722400	LOC_Os03g51230	BR	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Meanwhile, the osddm1b was less sensitive to brassinosteroids (BRs) while the endogenous BR levels increased
OsDDM1b	Os03g0722400	LOC_Os03g51230	BR	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 We detected changes in the expression levels of the BR signaling pathway and feedback-inhibited genes with and without exogenous BR application, and the alterations of expression were also observed in grain size-related genes in the osddm1b
OsDDM1b	Os03g0722400	LOC_Os03g51230	BR	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Altogether, our results suggest that OsDDM1b plays a crucial role in grain size via influencing cell proliferation and regulating BR signaling and homeostasis
OsDDM1b	Os03g0722400	LOC_Os03g51230	Brassinosteroid	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.
OsDDM1b	Os03g0722400	LOC_Os03g51230	BR signaling	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 We detected changes in the expression levels of the BR signaling pathway and feedback-inhibited genes with and without exogenous BR application, and the alterations of expression were also observed in grain size-related genes in the osddm1b
OsDDM1b	Os03g0722400	LOC_Os03g51230	BR signaling	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Altogether, our results suggest that OsDDM1b plays a crucial role in grain size via influencing cell proliferation and regulating BR signaling and homeostasis
OsDDM1b	Os03g0722400	LOC_Os03g51230	homeostasis	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.
OsDDM1b	Os03g0722400	LOC_Os03g51230	homeostasis	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Altogether, our results suggest that OsDDM1b plays a crucial role in grain size via influencing cell proliferation and regulating BR signaling and homeostasis
OsDDM1b	Os03g0722400	LOC_Os03g51230	lemma	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Consistent with the grain size, the outer parenchyma cell layers of lemma in osddm1b developed more cells with decreased size
OsDDM1b	Os03g0722400	LOC_Os03g51230	 BR 	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Meanwhile, the osddm1b was less sensitive to brassinosteroids (BRs) while the endogenous BR levels increased
OsDDM1b	Os03g0722400	LOC_Os03g51230	 BR 	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 We detected changes in the expression levels of the BR signaling pathway and feedback-inhibited genes with and without exogenous BR application, and the alterations of expression were also observed in grain size-related genes in the osddm1b
OsDDM1b	Os03g0722400	LOC_Os03g51230	 BR 	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Altogether, our results suggest that OsDDM1b plays a crucial role in grain size via influencing cell proliferation and regulating BR signaling and homeostasis
OsDDM1b	Os03g0722400	LOC_Os03g51230	cell proliferation	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 Altogether, our results suggest that OsDDM1b plays a crucial role in grain size via influencing cell proliferation and regulating BR signaling and homeostasis
OsDDM1b	Os03g0722400	LOC_Os03g51230	grain weight	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 We further analyzed the OsDDM1b T-DNA insertion loss-of-function of mutant, which exhibited dwarfism, smaller organ size, and shorter and wider grain size than the wild type (Hwayoung, HY), yet no difference in 1,000-grain weight
OsDDM1b	Os03g0722400	LOC_Os03g51230	organ size	OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	 We further analyzed the OsDDM1b T-DNA insertion loss-of-function of mutant, which exhibited dwarfism, smaller organ size, and shorter and wider grain size than the wild type (Hwayoung, HY), yet no difference in 1,000-grain weight
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	seed	The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development	A detailed investigation of the ovaries from OsDEES1 RNA interference plants indicated that the knockdown of OsDEES1 expression did not affect megasporogenesis but that it disturbed female gametophyte formation, resulting in a degenerated embryo sac and defective seed formation
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	seed	The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development	OsDEES1 exhibited a tissue-specific expression pattern in flowers and seedlings
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	flower	The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development	OsDEES1 exhibited a tissue-specific expression pattern in flowers and seedlings
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	sterility	The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development	OsDEES1 silencing by RNA interference caused a high rate of female sterility
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	seedling	The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development	OsDEES1 exhibited a tissue-specific expression pattern in flowers and seedlings
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	reproductive	The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development	Crossing experiments showed that female reproductive organs lacking OsDEES1 carried a functional defect
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	resistance	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative regulator of blast resistance
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	defense	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	Finally, we show that OsWAK91 is required for H2O2 production and sufficient to enhance defense gene expression during infection
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	blast	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative regulator of blast resistance
OsDEES1|OsWAK91	Os09g0561600	LOC_Os09g38850	blast resistance	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative regulator of blast resistance
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	xylem	A defensin-like protein drives cadmium efflux and allocation in rice.	CAL1 is expressed preferentially in root exodermis and xylem parenchyma cells
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	xylem	A defensin-like protein drives cadmium efflux and allocation in rice.	We provide evidence that CAL1 acts by chelating Cd in the cytosol and facilitating Cd secretion to extracellular spaces, hence lowering cytosolic Cd concentration while driving long-distance Cd transport via xylem vessels
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	root	A defensin-like protein drives cadmium efflux and allocation in rice.	CAL1 is expressed preferentially in root exodermis and xylem parenchyma cells
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	xylem parenchyma	A defensin-like protein drives cadmium efflux and allocation in rice.	CAL1 is expressed preferentially in root exodermis and xylem parenchyma cells
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	growth	Rice Defensin OsAFP1 is a New Drug Candidate against Human Pathogenic Fungi.	OsAFP1 exerted fungicidal activity against Candida albicans, the most common pathogenic fungus in humans, at 4 M concentration, but it did not inhibit the growth of human pathogenic bacteria
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	cell wall	Rice Defensin OsAFP1 is a New Drug Candidate against Human Pathogenic Fungi.	Immunohistochemistry showed that the OsAFP1 target molecule was located in the cell wall
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	Pi	Rice Defensin OsAFP1 is a New Drug Candidate against Human Pathogenic Fungi.	Further, PI uptake and apoptosis assays suggested that OsAFP1 exerts its antifungal activity by inducing apoptosis of target cells
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	pi	Rice Defensin OsAFP1 is a New Drug Candidate against Human Pathogenic Fungi.	Further, PI uptake and apoptosis assays suggested that OsAFP1 exerts its antifungal activity by inducing apoptosis of target cells
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	Pi uptake	Rice Defensin OsAFP1 is a New Drug Candidate against Human Pathogenic Fungi.	Further, PI uptake and apoptosis assays suggested that OsAFP1 exerts its antifungal activity by inducing apoptosis of target cells
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	blast	Partial peptides from rice defensin OsAFP1 exhibited antifungal activity against the rice blast pathogen Pyricularia oryzae.	Partial peptides from rice defensin OsAFP1 exhibited antifungal activity against the rice blast pathogen Pyricularia oryzae.
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	pathogen	Partial peptides from rice defensin OsAFP1 exhibited antifungal activity against the rice blast pathogen Pyricularia oryzae.	Partial peptides from rice defensin OsAFP1 exhibited antifungal activity against the rice blast pathogen Pyricularia oryzae.
OsDEF7|CAL1|OsAFP1	Os02g0629800	LOC_Os02g41904	phosphate	Crystal structure of rice defensin OsAFP1 and molecular insight into lipid-binding.	In lipid-binding analyses performed using nitrocellulose membranes immobilized with various membrane lipid components, OsAFP1 was found to bind to phosphatidylinositols (PIPs) harboring phosphate groups, particularly PI(3)P
OsDEF8	Os03g0130300	LOC_Os03g03810	antimicrobial activity	Gene expression analysis, subcellular localization, and in planta antimicrobial activity of rice (Oryza sativa L.) defensin 7 and 8.	Gene expression analysis, subcellular localization, and in planta antimicrobial activity of rice (Oryza sativa L.) defensin 7 and 8.
OsDEG10	Os08g0139000	LOC_Os08g04440	cold stress	OsDEG10 encoding a small RNA-binding protein is involved in abiotic stress signaling	OsDEG10 RNAi transgenic plants were more sensitive to high light and cold stresses compared to wild-type plants
OsDEG10	Os08g0139000	LOC_Os08g04440	abiotic stress	OsDEG10 encoding a small RNA-binding protein is involved in abiotic stress signaling	Among them, OsDEG10 is predicted to encode a small RNA-binding protein (RBP) and the transcript levels of OsDEG10 strongly increased under most of abiotic stress treatments such as high light, anoxia, NaCl, ABA, MV and cold
OsDEG10	Os08g0139000	LOC_Os08g04440	abiotic stress	OsDEG10 encoding a small RNA-binding protein is involved in abiotic stress signaling	Our results suggest that OsDEG10 is a small RBP involved in the response to various abiotic stresses
OsDEG10	Os08g0139000	LOC_Os08g04440	abiotic stress	OsDEG10 encoding a small RNA-binding protein is involved in abiotic stress signaling	OsDEG10 encoding a small RNA-binding protein is involved in abiotic stress signaling
OsDERF1	Os08g0454000	LOC_Os08g35240	tiller	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transgenic plants overexpressing OsDERF1 (OE) led to reduced tolerance to drought stress in rice at seedling stage, while knockdown of OsDERF1 (RI) expression conferred enhanced tolerance at seedling and tillering stages
OsDERF1	Os08g0454000	LOC_Os08g35240	ethylene	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Through analysis of transcriptional data, one of the drought-responsive ERF genes, OsDERF1, was identified for its activation in response to drought, ethylene and abscisic acid
OsDERF1	Os08g0454000	LOC_Os08g35240	ethylene	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice
OsDERF1	Os08g0454000	LOC_Os08g35240	drought tolerance	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	To elucidate the molecular basis of drought tolerance, we identified the target genes of OsDERF1 using the Affymetrix GeneChip, including the activation of cluster stress-related negative regulators such as ERF repressors
OsDERF1	Os08g0454000	LOC_Os08g35240	drought tolerance	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice
OsDERF1	Os08g0454000	LOC_Os08g35240	seedling	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transgenic plants overexpressing OsDERF1 (OE) led to reduced tolerance to drought stress in rice at seedling stage, while knockdown of OsDERF1 (RI) expression conferred enhanced tolerance at seedling and tillering stages
OsDERF1	Os08g0454000	LOC_Os08g35240	tillering	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transgenic plants overexpressing OsDERF1 (OE) led to reduced tolerance to drought stress in rice at seedling stage, while knockdown of OsDERF1 (RI) expression conferred enhanced tolerance at seedling and tillering stages
OsDERF1	Os08g0454000	LOC_Os08g35240	drought	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Through analysis of transcriptional data, one of the drought-responsive ERF genes, OsDERF1, was identified for its activation in response to drought, ethylene and abscisic acid
OsDERF1	Os08g0454000	LOC_Os08g35240	drought	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transgenic plants overexpressing OsDERF1 (OE) led to reduced tolerance to drought stress in rice at seedling stage, while knockdown of OsDERF1 (RI) expression conferred enhanced tolerance at seedling and tillering stages
OsDERF1	Os08g0454000	LOC_Os08g35240	drought	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	To elucidate the molecular basis of drought tolerance, we identified the target genes of OsDERF1 using the Affymetrix GeneChip, including the activation of cluster stress-related negative regulators such as ERF repressors
OsDERF1	Os08g0454000	LOC_Os08g35240	drought	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice
OsDES1	Os03g0430000	LOC_Os03g31570	development	Mutation of DEFECTIVE EMBRYO SAC1 results in a low seed-setting rate in rice by regulating embryo sac development.	 OsDES1 interacts with LONELY GUY (LOG), a cytokinin-activating enzyme that acts in the final step of cytokinin synthesis; mutation of LOG led to defective female reproductive organ development
OsDES1	Os03g0430000	LOC_Os03g31570	development	Mutation of DEFECTIVE EMBRYO SAC1 results in a low seed-setting rate in rice by regulating embryo sac development.	 These results demonstrate that OsDES1 functions in determining the rice seed-setting rate by regulating embryo sac development and fertilization
OsDES1	Os03g0430000	LOC_Os03g31570	cytokinin	Mutation of DEFECTIVE EMBRYO SAC1 results in a low seed-setting rate in rice by regulating embryo sac development.	 OsDES1 interacts with LONELY GUY (LOG), a cytokinin-activating enzyme that acts in the final step of cytokinin synthesis; mutation of LOG led to defective female reproductive organ development
OsDES1	Os03g0430000	LOC_Os03g31570	reproductive	Mutation of DEFECTIVE EMBRYO SAC1 results in a low seed-setting rate in rice by regulating embryo sac development.	 OsDES1 interacts with LONELY GUY (LOG), a cytokinin-activating enzyme that acts in the final step of cytokinin synthesis; mutation of LOG led to defective female reproductive organ development
OsDES1	Os03g0430000	LOC_Os03g31570	embryo	Mutation of DEFECTIVE EMBRYO SAC1 results in a low seed-setting rate in rice by regulating embryo sac development.	 The OsDES1 mutation disrupts the normal formation of functional megaspores, which ultimately results in a degenerated embryo sac in des1
OsDES1	Os03g0430000	LOC_Os03g31570	embryo	Mutation of DEFECTIVE EMBRYO SAC1 results in a low seed-setting rate in rice by regulating embryo sac development.	 These results demonstrate that OsDES1 functions in determining the rice seed-setting rate by regulating embryo sac development and fertilization
OsDES1	Os03g0430000	LOC_Os03g31570	seed-setting	Mutation of DEFECTIVE EMBRYO SAC1 results in a low seed-setting rate in rice by regulating embryo sac development.	 These results demonstrate that OsDES1 functions in determining the rice seed-setting rate by regulating embryo sac development and fertilization
OsDET1	Os01g0104600	LOC_Os01g01484	leaf	Mutation of OsDET1 increases chlorophyll content in rice	Genetic complementation demonstrated that OsDET1 mutation conferred the enhanced Chl content in the Gc mutant leaf
OsDET1	Os01g0104600	LOC_Os01g01484	development	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	Here, we found that OsDET1 is essential for maintaining normal rice development
OsDET1	Os01g0104600	LOC_Os01g01484	development	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	In conclusion, our data suggest that OsDET1 plays an important role in maintaining normal development in rice, and mediates the crosstalk between ABA biosynthesis and ABA signaling pathways in rice
OsDET1	Os01g0104600	LOC_Os01g01484	 ABA 	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice
OsDET1	Os01g0104600	LOC_Os01g01484	 ABA 	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	The repression of OsDET1 had detrimental effects on plant development, and we found that OsDET1 is involved in modulating ABA signaling in rice
OsDET1	Os01g0104600	LOC_Os01g01484	 ABA 	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	OsDET1 RNAi plants exhibited an ABA hypersensitivity phenotype
OsDET1	Os01g0104600	LOC_Os01g01484	 ABA 	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	Using yeast two-hybrid and BiFC assays, we determined that OsDET1 physically interacts with OsDDB1 and OsCOP10; OsDDA1 binds to the ABA receptors OsPYL5 and OsDDB1
OsDET1	Os01g0104600	LOC_Os01g01484	 ABA 	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	These findings suggest that OsDET1 deficiency disturbs the CDD complex, which is responsible for ABA receptor (OsPYL) degradation, eventually leading to ABA sensitivity in rice
OsDET1	Os01g0104600	LOC_Os01g01484	 ABA 	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	Additionally, OsDET1 also modulated ABA biosynthesis, as ABA biosynthesis was inhibited in OsDET1 RNAi plants and promoted in OE-OsDET1 plants
OsDET1	Os01g0104600	LOC_Os01g01484	 ABA 	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	In conclusion, our data suggest that OsDET1 plays an important role in maintaining normal development in rice, and mediates the crosstalk between ABA biosynthesis and ABA signaling pathways in rice
OsDET1	Os01g0104600	LOC_Os01g01484	ABA	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice
OsDET1	Os01g0104600	LOC_Os01g01484	ABA	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	The repression of OsDET1 had detrimental effects on plant development, and we found that OsDET1 is involved in modulating ABA signaling in rice
OsDET1	Os01g0104600	LOC_Os01g01484	ABA	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	OsDET1 RNAi plants exhibited an ABA hypersensitivity phenotype
OsDET1	Os01g0104600	LOC_Os01g01484	ABA	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	Using yeast two-hybrid and BiFC assays, we determined that OsDET1 physically interacts with OsDDB1 and OsCOP10; OsDDA1 binds to the ABA receptors OsPYL5 and OsDDB1
OsDET1	Os01g0104600	LOC_Os01g01484	ABA	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	These findings suggest that OsDET1 deficiency disturbs the CDD complex, which is responsible for ABA receptor (OsPYL) degradation, eventually leading to ABA sensitivity in rice
OsDET1	Os01g0104600	LOC_Os01g01484	ABA	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	Additionally, OsDET1 also modulated ABA biosynthesis, as ABA biosynthesis was inhibited in OsDET1 RNAi plants and promoted in OE-OsDET1 plants
OsDET1	Os01g0104600	LOC_Os01g01484	ABA	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	In conclusion, our data suggest that OsDET1 plays an important role in maintaining normal development in rice, and mediates the crosstalk between ABA biosynthesis and ABA signaling pathways in rice
OsDET1	Os01g0104600	LOC_Os01g01484	plant development	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	The repression of OsDET1 had detrimental effects on plant development, and we found that OsDET1 is involved in modulating ABA signaling in rice
OsDET1	Os01g0104600	LOC_Os01g01484	ABA biosynthesis	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice
OsDET1	Os01g0104600	LOC_Os01g01484	ABA biosynthesis	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	Additionally, OsDET1 also modulated ABA biosynthesis, as ABA biosynthesis was inhibited in OsDET1 RNAi plants and promoted in OE-OsDET1 plants
OsDET1	Os01g0104600	LOC_Os01g01484	ABA biosynthesis	OsDET1 Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice	In conclusion, our data suggest that OsDET1 plays an important role in maintaining normal development in rice, and mediates the crosstalk between ABA biosynthesis and ABA signaling pathways in rice
OsDET1	Os01g0104600	LOC_Os01g01484	flavonoid	Mutations in OsDET1, OsCOP10, and OsDDB1 confer embryonic lethality and alter flavonoid accumulation in Rice (Oryza sativa L.) seed.	 These findings will enhance our understanding of the functional roles of OsDET1 and the CDD complex in embryogenesis and flavonoid biosynthesis in rice seeds
OsDET1	Os01g0104600	LOC_Os01g01484	flavonoid biosynthesis	Mutations in OsDET1, OsCOP10, and OsDDB1 confer embryonic lethality and alter flavonoid accumulation in Rice (Oryza sativa L.) seed.	 These findings will enhance our understanding of the functional roles of OsDET1 and the CDD complex in embryogenesis and flavonoid biosynthesis in rice seeds
OsDEX1	Os03g0825700	LOC_Os03g61050	pollen	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Here we report a role of OsDEX1 (Defective in Exine Formation 1 in rice), a Ca2+ binding protein, in regulating rice tapetal cell degradation and pollen formation
OsDEX1	Os03g0825700	LOC_Os03g61050	pollen	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	In osdex1 anthers, tapetal cell degeneration is delayed and degradation of the callose wall surrounding the microspores is compromised, leading to aborted pollen formation and complete male sterility
OsDEX1	Os03g0825700	LOC_Os03g61050	pollen	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Phylogenetic analysis revealed that OsDEX1 may have a conserved function in binding Ca2+ in flowering plants, and genetic complementation of pollen wall defects in an Arabidopsis dex1 mutant confirmed its evolutionary conservation during pollen development
OsDEX1	Os03g0825700	LOC_Os03g61050	pollen	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Collectively, these findings suggest that OsDEX1 plays a conserved role in the development of tapetal cells and pollen formation, possibly via changing the Ca2+ homeostasis during pollen development
OsDEX1	Os03g0825700	LOC_Os03g61050	anther	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	OsDEX1 transcript is observed in tapetal cells and microspores during the early anther development
OsDEX1	Os03g0825700	LOC_Os03g61050	sterility	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	In osdex1 anthers, tapetal cell degeneration is delayed and degradation of the callose wall surrounding the microspores is compromised, leading to aborted pollen formation and complete male sterility
OsDEX1	Os03g0825700	LOC_Os03g61050	development	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	OsDEX1 transcript is observed in tapetal cells and microspores during the early anther development
OsDEX1	Os03g0825700	LOC_Os03g61050	development	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Phylogenetic analysis revealed that OsDEX1 may have a conserved function in binding Ca2+ in flowering plants, and genetic complementation of pollen wall defects in an Arabidopsis dex1 mutant confirmed its evolutionary conservation during pollen development
OsDEX1	Os03g0825700	LOC_Os03g61050	development	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Collectively, these findings suggest that OsDEX1 plays a conserved role in the development of tapetal cells and pollen formation, possibly via changing the Ca2+ homeostasis during pollen development
OsDEX1	Os03g0825700	LOC_Os03g61050	homeostasis	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Recombinant OsDEX1 is able to bind Ca2+ and regulate Ca2+ homeostasis in vitro, and osdex1 showed disturbed Ca2+ homeostasis in tapetal cells
OsDEX1	Os03g0825700	LOC_Os03g61050	homeostasis	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Collectively, these findings suggest that OsDEX1 plays a conserved role in the development of tapetal cells and pollen formation, possibly via changing the Ca2+ homeostasis during pollen development
OsDEX1	Os03g0825700	LOC_Os03g61050	tapetal	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Here we report a role of OsDEX1 (Defective in Exine Formation 1 in rice), a Ca2+ binding protein, in regulating rice tapetal cell degradation and pollen formation
OsDEX1	Os03g0825700	LOC_Os03g61050	tapetal	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	In osdex1 anthers, tapetal cell degeneration is delayed and degradation of the callose wall surrounding the microspores is compromised, leading to aborted pollen formation and complete male sterility
OsDEX1	Os03g0825700	LOC_Os03g61050	tapetal	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	OsDEX1 transcript is observed in tapetal cells and microspores during the early anther development
OsDEX1	Os03g0825700	LOC_Os03g61050	tapetal	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Recombinant OsDEX1 is able to bind Ca2+ and regulate Ca2+ homeostasis in vitro, and osdex1 showed disturbed Ca2+ homeostasis in tapetal cells
OsDEX1	Os03g0825700	LOC_Os03g61050	tapetal	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Collectively, these findings suggest that OsDEX1 plays a conserved role in the development of tapetal cells and pollen formation, possibly via changing the Ca2+ homeostasis during pollen development
OsDEX1	Os03g0825700	LOC_Os03g61050	anther development	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	OsDEX1 transcript is observed in tapetal cells and microspores during the early anther development
OsDEX1	Os03g0825700	LOC_Os03g61050	pollen development	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Phylogenetic analysis revealed that OsDEX1 may have a conserved function in binding Ca2+ in flowering plants, and genetic complementation of pollen wall defects in an Arabidopsis dex1 mutant confirmed its evolutionary conservation during pollen development
OsDEX1	Os03g0825700	LOC_Os03g61050	pollen development	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Collectively, these findings suggest that OsDEX1 plays a conserved role in the development of tapetal cells and pollen formation, possibly via changing the Ca2+ homeostasis during pollen development
OsDEX1	Os03g0825700	LOC_Os03g61050	pollen wall	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	Phylogenetic analysis revealed that OsDEX1 may have a conserved function in binding Ca2+ in flowering plants, and genetic complementation of pollen wall defects in an Arabidopsis dex1 mutant confirmed its evolutionary conservation during pollen development
OsDEX1	Os03g0825700	LOC_Os03g61050	male sterility	A rice Ca2+ binding protein is required for tapetum function and pollen formation.	In osdex1 anthers, tapetal cell degeneration is delayed and degradation of the callose wall surrounding the microspores is compromised, leading to aborted pollen formation and complete male sterility
OsDfr|OsA1	Os01g0633500	LOC_Os01g44260	transcription factor	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB	The expression pattern of these three genes indicates that the stress responsive accumulation of OsDfr and OsAns transcripts is mediated by the transcription factor, OsC1-MYB
OsDfr|OsA1	Os01g0633500	LOC_Os01g44260	seedling	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB	indica) seedlings under dehydration stress or high salt or abscisic acid (ABA) showed a significant enhancement of transcript level and/or transcript stability of OsDfr and OsAns
OsDfr|OsA1	Os01g0633500	LOC_Os01g44260	salt	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB	indica) seedlings under dehydration stress or high salt or abscisic acid (ABA) showed a significant enhancement of transcript level and/or transcript stability of OsDfr and OsAns
OsDfr|OsA1	Os01g0633500	LOC_Os01g44260	salt	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB	Rice flavonoid pathway genes, OsDfr and OsAns, are induced by dehydration, high salt and ABA, and contain stress responsive promoter elements that interact with the transcription activator, OsC1-MYB
OsDfr|OsA1	Os01g0633500	LOC_Os01g44260	grain	Plasma membrane H +-ATPase overexpression increases rice yield via simultaneous enhancement of nutrient uptake and photosynthesis	As a result, OSA1 overexpression in rice plants causes a 33% increase in grain yield and a 46% increase in N use efficiency overall
OsDfr|OsA1	Os01g0633500	LOC_Os01g44260	grain yield	Plasma membrane H +-ATPase overexpression increases rice yield via simultaneous enhancement of nutrient uptake and photosynthesis	As a result, OSA1 overexpression in rice plants causes a 33% increase in grain yield and a 46% increase in N use efficiency overall
OsDfr|OsA1	Os01g0633500	LOC_Os01g44260	yield	Plasma membrane H +-ATPase overexpression increases rice yield via simultaneous enhancement of nutrient uptake and photosynthesis	As a result, OSA1 overexpression in rice plants causes a 33% increase in grain yield and a 46% increase in N use efficiency overall
OsDG2	Os02g0606000	LOC_Os02g39340	seedling	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage
OsDG2	Os02g0606000	LOC_Os02g39340	chloroplast	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	KEY MESSAGE: OsDG2 gene encoded a novel chloroplast-targeted GRP in rice
OsDG2	Os02g0606000	LOC_Os02g39340	chloroplast	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	Disruption of the OsDG2 would lead to delayed greening phenotype and affected expression levels of genes associated with chloroplast development at early leaf stage of rice
OsDG2	Os02g0606000	LOC_Os02g39340	chloroplast	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	Subcellular localization results showed that OsDG2 was targeted in chloroplasts
OsDG2	Os02g0606000	LOC_Os02g39340	chloroplast	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	In osdg2 mutant, the expression levels of most genes associated with chloroplast development were severely decreased in the 3rd leaves, but almost recovered to wild-type level in the 4th leaves
OsDG2	Os02g0606000	LOC_Os02g39340	chloroplast	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	Our findings indicated that the nuclear-encoded OsDG2 plays important roles in chloroplast development at early leaf stage of rice
OsDG2	Os02g0606000	LOC_Os02g39340	chloroplast	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage
OsDG2	Os02g0606000	LOC_Os02g39340	leaf	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	Disruption of the OsDG2 would lead to delayed greening phenotype and affected expression levels of genes associated with chloroplast development at early leaf stage of rice
OsDG2	Os02g0606000	LOC_Os02g39340	leaf	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	In this study, we identified a rice GRP gene mutant named osdg2 (O ryza s ativa d elayed g reening 2), which exhibits delayed greening phenotype characterized as bright yellow leaves before the three-leaf stage and thereafter turns to normal green
OsDG2	Os02g0606000	LOC_Os02g39340	leaf	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage	Our findings indicated that the nuclear-encoded OsDG2 plays important roles in chloroplast development at early leaf stage of rice
OsDGD2β	Os03g0268300	LOC_Os03g16140	pollen	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	We then developed osdgd2β mutants by using the CRISPR/Cas9 system and elucidate its role, especially in the development of anther and pollen
OsDGD2β	Os03g0268300	LOC_Os03g16140	pollen	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	Overall, we showed the importance of DGDG in pollen development and loss of function of OsDGD2β results in male sterility
OsDGD2β	Os03g0268300	LOC_Os03g16140	anther	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	) genome has 5 genes encoding DGDG synthase, which are differentially expressed in different tissues, and OsDGD2β was identified to be the sole DGDG synthase gene expressed in anther
OsDGD2β	Os03g0268300	LOC_Os03g16140	anther	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	We then developed osdgd2β mutants by using the CRISPR/Cas9 system and elucidate its role, especially in the development of anther and pollen
OsDGD2β	Os03g0268300	LOC_Os03g16140	anther	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	The mutants had no notable differences in the vegetative phenotype, as corroborated by relative gene expression of DGDG synthase genes in leaves, chlorophyll measurements, and analysis of photosynthetic parameters, implying the specificity of OsDGD2β in anther
OsDGD2β	Os03g0268300	LOC_Os03g16140	sterility	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.
OsDGD2β	Os03g0268300	LOC_Os03g16140	sterility	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	The loss of function of OsDGD2β resulted in male sterility in rice characterized by pale yellow and shrunken anther, devoid of starch granules in pollen, and delayed degeneration of tapetal cells
OsDGD2β	Os03g0268300	LOC_Os03g16140	sterility	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	Overall, we showed the importance of DGDG in pollen development and loss of function of OsDGD2β results in male sterility
OsDGD2β	Os03g0268300	LOC_Os03g16140	sterility	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	Here, we have also proposed the use of OsDGD2β in hybrid rice breeding using the nuclear male sterility system
OsDGD2β	Os03g0268300	LOC_Os03g16140	development	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	We then developed osdgd2β mutants by using the CRISPR/Cas9 system and elucidate its role, especially in the development of anther and pollen
OsDGD2β	Os03g0268300	LOC_Os03g16140	development	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	Overall, we showed the importance of DGDG in pollen development and loss of function of OsDGD2β results in male sterility
OsDGD2β	Os03g0268300	LOC_Os03g16140	starch	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	The loss of function of OsDGD2β resulted in male sterility in rice characterized by pale yellow and shrunken anther, devoid of starch granules in pollen, and delayed degeneration of tapetal cells
OsDGD2β	Os03g0268300	LOC_Os03g16140	vegetative	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	The mutants had no notable differences in the vegetative phenotype, as corroborated by relative gene expression of DGDG synthase genes in leaves, chlorophyll measurements, and analysis of photosynthetic parameters, implying the specificity of OsDGD2β in anther
OsDGD2β	Os03g0268300	LOC_Os03g16140	breeding	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	Here, we have also proposed the use of OsDGD2β in hybrid rice breeding using the nuclear male sterility system
OsDGD2β	Os03g0268300	LOC_Os03g16140	tapetal	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	The loss of function of OsDGD2β resulted in male sterility in rice characterized by pale yellow and shrunken anther, devoid of starch granules in pollen, and delayed degeneration of tapetal cells
OsDGD2β	Os03g0268300	LOC_Os03g16140	male sterility	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.
OsDGD2β	Os03g0268300	LOC_Os03g16140	male sterility	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	The loss of function of OsDGD2β resulted in male sterility in rice characterized by pale yellow and shrunken anther, devoid of starch granules in pollen, and delayed degeneration of tapetal cells
OsDGD2β	Os03g0268300	LOC_Os03g16140	male sterility	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	Overall, we showed the importance of DGDG in pollen development and loss of function of OsDGD2β results in male sterility
OsDGD2β	Os03g0268300	LOC_Os03g16140	male sterility	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	Here, we have also proposed the use of OsDGD2β in hybrid rice breeding using the nuclear male sterility system
OsDGD2β	Os03g0268300	LOC_Os03g16140	pollen development	OsDGD2β is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers Male Sterility in Rice.	Overall, we showed the importance of DGDG in pollen development and loss of function of OsDGD2β results in male sterility
OsDGL1	Os07g0209000	LOC_Os07g10830	meristem	OsDGL1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice	The leaky rice mutant, Osdgl1, displayed a change of matrix polysaccharides in its root cell wall, shorter root cell length, smaller root meristem and cell death in the root
OsDGL1	Os07g0209000	LOC_Os07g10830	root development	OsDGL1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice	OsDGL1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice
OsDGL1	Os07g0209000	LOC_Os07g10830	cell death	OsDGL1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice	The leaky rice mutant, Osdgl1, displayed a change of matrix polysaccharides in its root cell wall, shorter root cell length, smaller root meristem and cell death in the root
OsDGL1	Os07g0209000	LOC_Os07g10830	root	OsDGL1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice	The leaky rice mutant, Osdgl1, displayed a change of matrix polysaccharides in its root cell wall, shorter root cell length, smaller root meristem and cell death in the root
OsDGL1	Os07g0209000	LOC_Os07g10830	root	OsDGL1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice	Consistent with the known function of the OST complex in eukaryotes, the Osdgl1 mutation leads to a defect in N-glycosylation in the root
OsDGL1	Os07g0209000	LOC_Os07g10830	root	OsDGL1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice	OsDGL1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice
OsDGL1	Os07g0209000	LOC_Os07g10830	cell wall	OsDGL1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice	The leaky rice mutant, Osdgl1, displayed a change of matrix polysaccharides in its root cell wall, shorter root cell length, smaller root meristem and cell death in the root
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	zinc	Plant architecture and grain yield are regulated by the novel DHHC-type zinc finger protein genes in rice (Oryza sativa L.)	In this study, we cloned a novel DHHC-type zinc finger protein gene Os02g0819100 and its alternative splice variant OsDHHC1 from the cDNA of rice (Oryza sativa L
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	R protein	Plant architecture and grain yield are regulated by the novel DHHC-type zinc finger protein genes in rice (Oryza sativa L.)	In this study, we cloned a novel DHHC-type zinc finger protein gene Os02g0819100 and its alternative splice variant OsDHHC1 from the cDNA of rice (Oryza sativa L
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	tillering	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	OsPAT15 (OsDHHC1), a novel DHHC-type zinc finger protein gene, was reported to regulate rice plant architecture by altering the tillering
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	seed	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	seed	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	As anticipated, OsPAT15 transgenic plants exhibited branching and seed yield
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	yield	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	yield	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	As anticipated, OsPAT15 transgenic plants exhibited branching and seed yield
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	architecture	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	OsPAT15 (OsDHHC1), a novel DHHC-type zinc finger protein gene, was reported to regulate rice plant architecture by altering the tillering
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	zinc	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	OsPAT15 (OsDHHC1), a novel DHHC-type zinc finger protein gene, was reported to regulate rice plant architecture by altering the tillering
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	zinc	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	In this study, the DHHC-type zinc finger protein gene OsPAT15 was determined to have sulfur acyl transferase activity in the akr1 yeast mutant in a complementation experiment
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	branching	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	As anticipated, OsPAT15 transgenic plants exhibited branching and seed yield
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	R protein	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	OsPAT15 (OsDHHC1), a novel DHHC-type zinc finger protein gene, was reported to regulate rice plant architecture by altering the tillering
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	R protein	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	In this study, the DHHC-type zinc finger protein gene OsPAT15 was determined to have sulfur acyl transferase activity in the akr1 yeast mutant in a complementation experiment
OsDHHC1|OsPAT15	Os02g0819100	LOC_Os02g57370	plant architecture	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene OsPAT15 in Brassica napus L.	OsPAT15 (OsDHHC1), a novel DHHC-type zinc finger protein gene, was reported to regulate rice plant architecture by altering the tillering
OsDHHC30	Os12g0480000	LOC_Os12g29560	salt	Screening DHHCs of S-acylated proteins using an OsDHHC cDNA library and bimolecular fluorescence complementation in rice.	 Overexpression of OsDHHC30 in rice plants improved their salt and oxidative tolerance
OsDHHC30	Os12g0480000	LOC_Os12g29560	tolerance	Screening DHHCs of S-acylated proteins using an OsDHHC cDNA library and bimolecular fluorescence complementation in rice.	 Overexpression of OsDHHC30 in rice plants improved their salt and oxidative tolerance
OsDHHC30	Os12g0480000	LOC_Os12g29560	oxidative	Screening DHHCs of S-acylated proteins using an OsDHHC cDNA library and bimolecular fluorescence complementation in rice.	 Overexpression of OsDHHC30 in rice plants improved their salt and oxidative tolerance
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	temperature	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	Expression of OsDhn1 was strongly induced by low temperature as well as by drought
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	salt	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D	GUS assay of OsDhn1::gus plants showed that the GUS activity in the leaves was induced by drought stress but not by wound, cold, salt, or ABA treatment
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	ABA	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D	GUS assay of OsDhn1::gus plants showed that the GUS activity in the leaves was induced by drought stress but not by wound, cold, salt, or ABA treatment
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	drought	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	Expression of OsDhn1 was strongly induced by low temperature as well as by drought
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	seedling	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	Induction of OsDhn1 by cold stress was clearcut in the roots of seedlings and the epidermis of palea and lemma
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	palea	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	Induction of OsDhn1 by cold stress was clearcut in the roots of seedlings and the epidermis of palea and lemma
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	root	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	Induction of OsDhn1 by cold stress was clearcut in the roots of seedlings and the epidermis of palea and lemma
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	abiotic stress	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	cold stress	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	Induction of OsDhn1 by cold stress was clearcut in the roots of seedlings and the epidermis of palea and lemma
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	abiotic stress	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D	Taken together, these suggest that the drought-inducible OsDhn1 gene is regulated by abiotic stress signaling pathway involving CBF/DREB
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	drought	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D	GUS assay of OsDhn1::gus plants showed that the GUS activity in the leaves was induced by drought stress but not by wound, cold, salt, or ABA treatment
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	drought	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D	Taken together, these suggest that the drought-inducible OsDhn1 gene is regulated by abiotic stress signaling pathway involving CBF/DREB
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	drought	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	lemma	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	Induction of OsDhn1 by cold stress was clearcut in the roots of seedlings and the epidermis of palea and lemma
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	seed	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	1 kb cDNA, designated Oryza sativa Dehydrin 1 (OsDhn1), was isolated from the seed coat of rice
OsDhn1|OsLip9	Os02g0669100	LOC_Os02g44870	seed	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.)	Induction of OsDhn1 by cold stress was clearcut in the roots of seedlings and the epidermis of palea and lemma
OsDHODH1	Os02g0736400	LOC_Os02g50350	drought tolerance	The OsDHODH1 gene is involved in salt and drought tolerance in rice	The OsDHODH1 gene is involved in salt and drought tolerance in rice
OsDHODH1	Os02g0736400	LOC_Os02g50350	drought	The OsDHODH1 gene is involved in salt and drought tolerance in rice	Expression analysis indicated that OsDHODH1 is upregulated by salt, drought and exogenous abscisic acid (ABA), but not by cold
OsDHODH1	Os02g0736400	LOC_Os02g50350	drought	The OsDHODH1 gene is involved in salt and drought tolerance in rice	Overexpression of the OsDHODH1 gene in rice increased the DHODH activity and enhanced plant tolerance to salt and drought stresses as compared with wild type and OsDHODH1-antisense transgenic plants
OsDHODH1	Os02g0736400	LOC_Os02g50350	drought	The OsDHODH1 gene is involved in salt and drought tolerance in rice	Our findings reveal, for the first time, that cytosolic dihydroorotate dehydrogenase is involved in plant stress response and that OsDHODH1 could be used in engineering crop plants with enhanced tolerance to salt and drought
OsDHODH1	Os02g0736400	LOC_Os02g50350	drought	The OsDHODH1 gene is involved in salt and drought tolerance in rice	The OsDHODH1 gene is involved in salt and drought tolerance in rice
OsDHODH1	Os02g0736400	LOC_Os02g50350	salt	The OsDHODH1 gene is involved in salt and drought tolerance in rice	Expression analysis indicated that OsDHODH1 is upregulated by salt, drought and exogenous abscisic acid (ABA), but not by cold
OsDHODH1	Os02g0736400	LOC_Os02g50350	salt	The OsDHODH1 gene is involved in salt and drought tolerance in rice	By prokaryotic expression, we determined the enzymatic activity of OsDHODH1 and found that overproduction of OsDHODH1 significantly improved the tolerance of Escherichia coli cells to salt and osmotic stresses
OsDHODH1	Os02g0736400	LOC_Os02g50350	salt	The OsDHODH1 gene is involved in salt and drought tolerance in rice	Overexpression of the OsDHODH1 gene in rice increased the DHODH activity and enhanced plant tolerance to salt and drought stresses as compared with wild type and OsDHODH1-antisense transgenic plants
OsDHODH1	Os02g0736400	LOC_Os02g50350	salt	The OsDHODH1 gene is involved in salt and drought tolerance in rice	Our findings reveal, for the first time, that cytosolic dihydroorotate dehydrogenase is involved in plant stress response and that OsDHODH1 could be used in engineering crop plants with enhanced tolerance to salt and drought
OsDHODH1	Os02g0736400	LOC_Os02g50350	salt	The OsDHODH1 gene is involved in salt and drought tolerance in rice	The OsDHODH1 gene is involved in salt and drought tolerance in rice
OsDHODH1	Os02g0736400	LOC_Os02g50350	seedlings	Nitrosative stress-mediated inhibition of OsDHODH1 gene expression suggests roots growth reduction in rice (Oryza sativa L.).	Our findings reveal that short-term exposure of rice seedlings to 1 mM SNP (Nitric oxide donor) applied exogenously for 1 h resulted in significant down-regulation of OsDHODH1 expression in all rice cultivars
OsDHODH1	Os02g0736400	LOC_Os02g50350	root	Nitrosative stress-mediated inhibition of OsDHODH1 gene expression suggests roots growth reduction in rice (Oryza sativa L.).	These results collectively suggest a possible role of OsDHODH1 and OsCcOX5b role in plant root growth during nitrosative stress responses
OsDHODH1	Os02g0736400	LOC_Os02g50350	growth	Nitrosative stress-mediated inhibition of OsDHODH1 gene expression suggests roots growth reduction in rice (Oryza sativa L.).	Nitrosative stress-mediated inhibition of OsDHODH1 gene expression suggests roots growth reduction in rice (Oryza sativa L.).
OsDHODH1	Os02g0736400	LOC_Os02g50350	growth	Nitrosative stress-mediated inhibition of OsDHODH1 gene expression suggests roots growth reduction in rice (Oryza sativa L.).	These results collectively suggest a possible role of OsDHODH1 and OsCcOX5b role in plant root growth during nitrosative stress responses
OsDHODH1	Os02g0736400	LOC_Os02g50350	stress	Nitrosative stress-mediated inhibition of OsDHODH1 gene expression suggests roots growth reduction in rice (Oryza sativa L.).	This study monitored the transcriptional response of OsDHODH1 under nitrosative stress conditions relative to the transcripts accumulations for the core mitochondrial cytochrome c oxidase1 (CcOX1) subunit, nuclear CcOX subunits 5b and 5c, two rice nitrate reductases (OsNIA1 and OsNIA2), and nitric oxide excess 1 (OsNOE1) genes
OsDHODH1	Os02g0736400	LOC_Os02g50350	stress	Nitrosative stress-mediated inhibition of OsDHODH1 gene expression suggests roots growth reduction in rice (Oryza sativa L.).	These results collectively suggest a possible role of OsDHODH1 and OsCcOX5b role in plant root growth during nitrosative stress responses
OsDHODH1	Os02g0736400	LOC_Os02g50350	nitrate	Nitrosative stress-mediated inhibition of OsDHODH1 gene expression suggests roots growth reduction in rice (Oryza sativa L.).	This study monitored the transcriptional response of OsDHODH1 under nitrosative stress conditions relative to the transcripts accumulations for the core mitochondrial cytochrome c oxidase1 (CcOX1) subunit, nuclear CcOX subunits 5b and 5c, two rice nitrate reductases (OsNIA1 and OsNIA2), and nitric oxide excess 1 (OsNOE1) genes
OsDHODH1	Os02g0736400	LOC_Os02g50350	stress response	Nitrosative stress-mediated inhibition of OsDHODH1 gene expression suggests roots growth reduction in rice (Oryza sativa L.).	These results collectively suggest a possible role of OsDHODH1 and OsCcOX5b role in plant root growth during nitrosative stress responses
OsDHSRP1	Os02g0150700	LOC_Os02g05692	root	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	The Arabidopsis plants overexpressing OsDHSRP1 exhibited hypersensitivity to drought, heat, and NaCl stress and a decrease in their germination rates and root lengths compared to the control plants because the degradation of the OsGLYI-11
OsDHSRP1	Os02g0150700	LOC_Os02g05692	abiotic stress	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	The OsDHSRP1 gene transcripts were highly expressed under various abiotic stresses such as NaCl, drought, and heat and the phytohormone abscisic acid (ABA)
OsDHSRP1	Os02g0150700	LOC_Os02g05692	abiotic stress	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	Our finding supports the hypothesis that the OsDHSRP1 E3 ligase acts as a negative regulator, and the degradation of its substrate proteins via ubiquitination plays important roles in regulating various abiotic stress responses via an ABA-independent pathway
OsDHSRP1	Os02g0150700	LOC_Os02g05692	stress	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	The Arabidopsis plants overexpressing OsDHSRP1 exhibited hypersensitivity to drought, heat, and NaCl stress and a decrease in their germination rates and root lengths compared to the control plants because the degradation of the OsGLYI-11
OsDHSRP1	Os02g0150700	LOC_Os02g05692	stress	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	Our finding supports the hypothesis that the OsDHSRP1 E3 ligase acts as a negative regulator, and the degradation of its substrate proteins via ubiquitination plays important roles in regulating various abiotic stress responses via an ABA-independent pathway
OsDHSRP1	Os02g0150700	LOC_Os02g05692	biotic stress	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	The OsDHSRP1 gene transcripts were highly expressed under various abiotic stresses such as NaCl, drought, and heat and the phytohormone abscisic acid (ABA)
OsDHSRP1	Os02g0150700	LOC_Os02g05692	biotic stress	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	Our finding supports the hypothesis that the OsDHSRP1 E3 ligase acts as a negative regulator, and the degradation of its substrate proteins via ubiquitination plays important roles in regulating various abiotic stress responses via an ABA-independent pathway
OsDHSRP1	Os02g0150700	LOC_Os02g05692	abscisic acid	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	The OsDHSRP1 gene transcripts were highly expressed under various abiotic stresses such as NaCl, drought, and heat and the phytohormone abscisic acid (ABA)
OsDHSRP1	Os02g0150700	LOC_Os02g05692	phytohormone	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	The OsDHSRP1 gene transcripts were highly expressed under various abiotic stresses such as NaCl, drought, and heat and the phytohormone abscisic acid (ABA)
OsDHSRP1	Os02g0150700	LOC_Os02g05692	stress response	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	Our finding supports the hypothesis that the OsDHSRP1 E3 ligase acts as a negative regulator, and the degradation of its substrate proteins via ubiquitination plays important roles in regulating various abiotic stress responses via an ABA-independent pathway
OsDHSRP1	Os02g0150700	LOC_Os02g05692	root length	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	The Arabidopsis plants overexpressing OsDHSRP1 exhibited hypersensitivity to drought, heat, and NaCl stress and a decrease in their germination rates and root lengths compared to the control plants because the degradation of the OsGLYI-11
OsDi19-1	Os05g0562200	LOC_Os05g48800	auxin	A comprehensive transcriptome analysis of contrasting rice cultivars highlights the role of auxin and ABA responsive genes in heat stress response	The changes in expression of few auxin and ABA associated genes, such as OsIAA13, OsIAA20, ILL8, OsbZIP12, OsPP2C51, OsDi19-1 and OsHOX24, among others, were validated under high-temperature conditions using RT-qPCR
OsDi19-1	Os05g0562200	LOC_Os05g48800	ABA	A comprehensive transcriptome analysis of contrasting rice cultivars highlights the role of auxin and ABA responsive genes in heat stress response	The changes in expression of few auxin and ABA associated genes, such as OsIAA13, OsIAA20, ILL8, OsbZIP12, OsPP2C51, OsDi19-1 and OsHOX24, among others, were validated under high-temperature conditions using RT-qPCR
OsDi19-1	Os05g0562200	LOC_Os05g48800	ABA	A comprehensive transcriptome analysis of contrasting rice cultivars highlights the role of auxin and ABA responsive genes in heat stress response	The changes in expression of few auxin and ABA associated genes, such as OsIAA13, OsIAA20, ILL8, OsbZIP12, OsPP2C51, OsDi19-1 and OsHOX24, among others, were validated under high-temperature conditions using RT-qPCR
OsDi19-4	Os02g0304900	LOC_Os02g20170	drought	Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.	Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.
OsDi19-4	Os02g0304900	LOC_Os02g20170	drought	Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.	Overexpression of OsDi19-4 in rice increased drought tolerance by enhancing ROS-scavenging activity
OsDi19-4	Os02g0304900	LOC_Os02g20170	drought tolerance	Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.	Overexpression of OsDi19-4 in rice increased drought tolerance by enhancing ROS-scavenging activity
OsDi19-4	Os02g0304900	LOC_Os02g20170	tolerance	Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.	Overexpression of OsDi19-4 in rice increased drought tolerance by enhancing ROS-scavenging activity
OsDi19-4	Os02g0304900	LOC_Os02g20170	drought resistance	Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.	Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.
OsDi19-4	Os02g0304900	LOC_Os02g20170	growth	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	In this study, we found that overexpressing OsDi19-4 in rice altered the expression of a series of ABA-responsive genes, resulting in strong ABA hypersensitive phenotypes including ABA-induced seed germination inhibition, early seedling growth inhibition and stomatal closure
OsDi19-4	Os02g0304900	LOC_Os02g20170	seedling	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	In this study, we found that overexpressing OsDi19-4 in rice altered the expression of a series of ABA-responsive genes, resulting in strong ABA hypersensitive phenotypes including ABA-induced seed germination inhibition, early seedling growth inhibition and stomatal closure
OsDi19-4	Os02g0304900	LOC_Os02g20170	seed	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	In this study, we found that overexpressing OsDi19-4 in rice altered the expression of a series of ABA-responsive genes, resulting in strong ABA hypersensitive phenotypes including ABA-induced seed germination inhibition, early seedling growth inhibition and stomatal closure
OsDi19-4	Os02g0304900	LOC_Os02g20170	seed germination	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	In this study, we found that overexpressing OsDi19-4 in rice altered the expression of a series of ABA-responsive genes, resulting in strong ABA hypersensitive phenotypes including ABA-induced seed germination inhibition, early seedling growth inhibition and stomatal closure
OsDi19-4	Os02g0304900	LOC_Os02g20170	ABA	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.
OsDi19-4	Os02g0304900	LOC_Os02g20170	ABA	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	In this study, we found that overexpressing OsDi19-4 in rice altered the expression of a series of ABA-responsive genes, resulting in strong ABA hypersensitive phenotypes including ABA-induced seed germination inhibition, early seedling growth inhibition and stomatal closure
OsDi19-4	Os02g0304900	LOC_Os02g20170	ABA	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	Taken together, these data demonstrate that OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response by modulating the expression of ABA-responsive genes in rice
OsDi19-4	Os02g0304900	LOC_Os02g20170	stomatal	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	In this study, we found that overexpressing OsDi19-4 in rice altered the expression of a series of ABA-responsive genes, resulting in strong ABA hypersensitive phenotypes including ABA-induced seed germination inhibition, early seedling growth inhibition and stomatal closure
OsDi19-4	Os02g0304900	LOC_Os02g20170	ABA	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.
OsDi19-4	Os02g0304900	LOC_Os02g20170	ABA	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	In this study, we found that overexpressing OsDi19-4 in rice altered the expression of a series of ABA-responsive genes, resulting in strong ABA hypersensitive phenotypes including ABA-induced seed germination inhibition, early seedling growth inhibition and stomatal closure
OsDi19-4	Os02g0304900	LOC_Os02g20170	ABA	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	On the contrary, OsDi19-4 knock-down lines were less sensitive to ABA
OsDi19-4	Os02g0304900	LOC_Os02g20170	ABA	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	Additionally, OsCDPK14 was identified to interact with OsDi19-4 and be responsible for the phosphorylation of OsDi19-4, and the phosphorylation of OsDi19-4 was further enhanced after the treatment of ABA
OsDi19-4	Os02g0304900	LOC_Os02g20170	ABA	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	Transient expression assays confirmed the direct regulation role of OsDi19-4, and the regulation was further enhanced by the increased phosphorylation of OsDi19-4 after the treatment of ABA
OsDi19-4	Os02g0304900	LOC_Os02g20170	ABA	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	Taken together, these data demonstrate that OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response by modulating the expression of ABA-responsive genes in rice
OsDi19-5	Os01g0971100	LOC_Os01g73960	seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
OsDi19-5	Os01g0971100	LOC_Os01g73960	seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	In addition, OsClo5 enhanced the inhibitory effect of OsDi19-5 in the tobacco transient system, which was confirmed by qRT-PCR analysis in rice seedlings under salt stress
OsDi19-5	Os01g0971100	LOC_Os01g73960	salt	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
OsDi19-5	Os01g0971100	LOC_Os01g73960	salt	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	In addition, OsClo5 enhanced the inhibitory effect of OsDi19-5 in the tobacco transient system, which was confirmed by qRT-PCR analysis in rice seedlings under salt stress
OsDi19-5	Os01g0971100	LOC_Os01g73960	tolerance	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
OsDi19-5	Os01g0971100	LOC_Os01g73960	salt stress	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
OsDi19-5	Os01g0971100	LOC_Os01g73960	salt stress	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	In addition, OsClo5 enhanced the inhibitory effect of OsDi19-5 in the tobacco transient system, which was confirmed by qRT-PCR analysis in rice seedlings under salt stress
OsDi19-5	Os01g0971100	LOC_Os01g73960	stress	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
OsDi19-5	Os01g0971100	LOC_Os01g73960	stress	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	In addition, OsClo5 enhanced the inhibitory effect of OsDi19-5 in the tobacco transient system, which was confirmed by qRT-PCR analysis in rice seedlings under salt stress
OsDi19-5	Os01g0971100	LOC_Os01g73960	stress tolerance	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings
OsDIAT	Os05g0244700	LOC_Os05g15530	drought	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 OsDIAT-overexpressing (OsDIATOX) plants were more tolerant to drought stress, whereas osdiat plants were more susceptible to drought stress compared to non-transgenic (NT) plants
OsDIAT	Os05g0244700	LOC_Os05g15530	drought	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 Collectively, these findings suggest that OsDIAT mediates drought tolerance by promoting the accumulation of BCAAs
OsDIAT	Os05g0244700	LOC_Os05g15530	stress	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 The expression of OsDIAT was induced in plants upon exposure to abiotic stress
OsDIAT	Os05g0244700	LOC_Os05g15530	stress	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 OsDIAT-overexpressing (OsDIATOX) plants were more tolerant to drought stress, whereas osdiat plants were more susceptible to drought stress compared to non-transgenic (NT) plants
OsDIAT	Os05g0244700	LOC_Os05g15530	drought stress	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 OsDIAT-overexpressing (OsDIATOX) plants were more tolerant to drought stress, whereas osdiat plants were more susceptible to drought stress compared to non-transgenic (NT) plants
OsDIAT	Os05g0244700	LOC_Os05g15530	drought stress 	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 OsDIAT-overexpressing (OsDIATOX) plants were more tolerant to drought stress, whereas osdiat plants were more susceptible to drought stress compared to non-transgenic (NT) plants
OsDIAT	Os05g0244700	LOC_Os05g15530	tolerance	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 Collectively, these findings suggest that OsDIAT mediates drought tolerance by promoting the accumulation of BCAAs
OsDIAT	Os05g0244700	LOC_Os05g15530	abiotic stress	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 The expression of OsDIAT was induced in plants upon exposure to abiotic stress
OsDIAT	Os05g0244700	LOC_Os05g15530	drought tolerance	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 Collectively, these findings suggest that OsDIAT mediates drought tolerance by promoting the accumulation of BCAAs
OsDIAT	Os05g0244700	LOC_Os05g15530	biotic stress	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 The expression of OsDIAT was induced in plants upon exposure to abiotic stress
OsDIAT	Os05g0244700	LOC_Os05g15530	cytoplasm	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE enhances drought tolerance in rice.	 An in vitro enzyme activity assay indicated that OsDIAT is a branched-chain amino acid aminotransferase (BCAT), and subcellular localization analysis revealed that OsDIAT localizes to the cytoplasm
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	drought	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	To explore the potential gene function for improving rice reproductive development under drought, a drought induced gene, Oryza sativa Drought-Induced LTP (OsDIL) encoding a lipid transfer protein, was identified from our microarray data and selected for further study
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	drought	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	OsDIL was primarily expressed in the anther and mainly responsive to abiotic stresses, including drought, cold, NaCl, and stress-related plant hormone abscisic acid (ABA)
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	drought	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Compared with wild type, the OsDIL-overexpressing transgenic rice plants were more tolerant to drought stress during vegetative development and showed less severe tapetal defects and fewer defective anther sacs when treated with drought at the reproductive stage
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	drought	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	The expression levels of the drought-responsive genes RD22, SODA1, bZIP46 and POD, as well as the ABA synthetic gene ZEP1 were up-regulated in the OsDIL-overexpression lines but the ABA degradation gene ABAOX3 was down-regulated
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	drought	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	drought	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Overexpression of OsDIL significantly enhanced drought resistance in transgenic rice during reproductive development, while showing no phenotypic changes or yield penalty under normal conditions
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	drought	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	pollen	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	ABA	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	The expression levels of the drought-responsive genes RD22, SODA1, bZIP46 and POD, as well as the ABA synthetic gene ZEP1 were up-regulated in the OsDIL-overexpression lines but the ABA degradation gene ABAOX3 was down-regulated
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	anther	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	OsDIL was primarily expressed in the anther and mainly responsive to abiotic stresses, including drought, cold, NaCl, and stress-related plant hormone abscisic acid (ABA)
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	anther	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Compared with wild type, the OsDIL-overexpressing transgenic rice plants were more tolerant to drought stress during vegetative development and showed less severe tapetal defects and fewer defective anther sacs when treated with drought at the reproductive stage
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	anther	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	drought tolerance	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	fertility	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	anther development	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Moreover, overexpression of OsDIL lessened the down-regulation by drought of anther developmental genes (OsC4, CYP704B2 and OsCP1), providing a mechanism supporting pollen fertility under drought
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	tapetal	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Compared with wild type, the OsDIL-overexpressing transgenic rice plants were more tolerant to drought stress during vegetative development and showed less severe tapetal defects and fewer defective anther sacs when treated with drought at the reproductive stage
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	anther	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements	Here, we isolated a novel rice anther-specific plant lipid transfer protein (OsLTP6) gene through high through-put expressional profiling
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	anther	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements	Histochemical and fluorometric GUS assay showed that GUS was specifically expressed in the anthers and pollens in OsLTP6 promoter::uidA transgenic plants
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	anther	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements	Transverse section of the rice anther further indicated that the OsLTP6 promoter directed the reporter gene specifically expressed in anther tapetum
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	anther	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements	The results indicated that the OsLTP6 promoter achieved anther-specific expression through a combination of positive and negative regulatory elements
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	anther	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	vegetative	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Compared with wild type, the OsDIL-overexpressing transgenic rice plants were more tolerant to drought stress during vegetative development and showed less severe tapetal defects and fewer defective anther sacs when treated with drought at the reproductive stage
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	vegetative	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	yield	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Overexpression of OsDIL significantly enhanced drought resistance in transgenic rice during reproductive development, while showing no phenotypic changes or yield penalty under normal conditions
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	yield	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Therefore, OsDIL is an excellent candidate gene for genetic improvement of crop yield in adaption to unfavorable environments
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	tapetum	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements	Transverse section of the rice anther further indicated that the OsLTP6 promoter directed the reporter gene specifically expressed in anther tapetum
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	abiotic stress	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	OsDIL was primarily expressed in the anther and mainly responsive to abiotic stresses, including drought, cold, NaCl, and stress-related plant hormone abscisic acid (ABA)
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	reproductive	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	To explore the potential gene function for improving rice reproductive development under drought, a drought induced gene, Oryza sativa Drought-Induced LTP (OsDIL) encoding a lipid transfer protein, was identified from our microarray data and selected for further study
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	reproductive	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Compared with wild type, the OsDIL-overexpressing transgenic rice plants were more tolerant to drought stress during vegetative development and showed less severe tapetal defects and fewer defective anther sacs when treated with drought at the reproductive stage
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	reproductive	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Overexpression of OsDIL significantly enhanced drought resistance in transgenic rice during reproductive development, while showing no phenotypic changes or yield penalty under normal conditions
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	reproductive	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	pollen	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements	Histochemical and fluorometric GUS assay showed that GUS was specifically expressed in the anthers and pollens in OsLTP6 promoter::uidA transgenic plants
OsDIL|OsLTP6	Os10g0148000	LOC_Os10g05720	drought resistance	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	Overexpression of OsDIL significantly enhanced drought resistance in transgenic rice during reproductive development, while showing no phenotypic changes or yield penalty under normal conditions
OsDim1	Os10g0486600	LOC_Os10g34520	root	The expression pattern of OsDim1 in rice and its proposed function.	According to the present study findings, RNAi mediated knockdown of OsDim1 resulted in phytohormonal imbalance, reduced amylase activity, affected differentiation of embryonic root elongation zone tissues, suppressed embryonic root and shoot growth, and impaired pollen tube elongation
OsDim1	Os10g0486600	LOC_Os10g34520	growth	The expression pattern of OsDim1 in rice and its proposed function.	In contrast, overexpression of OsDim1 showed significant growth in embryonic roots and shoots, while it increased culm length, total number of tillers per plant, seed setting rate, and total number of grains per panicle compared to its wild type line
OsDim1	Os10g0486600	LOC_Os10g34520	growth	The expression pattern of OsDim1 in rice and its proposed function.	In summary, we propose OsDim1 plays an important role in seedling growth and pollen tube elongation, and has pleiotropic effects on reproductive tissues
OsDim1	Os10g0486600	LOC_Os10g34520	shoot	The expression pattern of OsDim1 in rice and its proposed function.	According to the present study findings, RNAi mediated knockdown of OsDim1 resulted in phytohormonal imbalance, reduced amylase activity, affected differentiation of embryonic root elongation zone tissues, suppressed embryonic root and shoot growth, and impaired pollen tube elongation
OsDim1	Os10g0486600	LOC_Os10g34520	pollen	The expression pattern of OsDim1 in rice and its proposed function.	The findings presented in this paper suggest that OsDim1 is important in early seedling development, pollen tube elongation, and impacts rice yield components
OsDim1	Os10g0486600	LOC_Os10g34520	pollen	The expression pattern of OsDim1 in rice and its proposed function.	According to the present study findings, RNAi mediated knockdown of OsDim1 resulted in phytohormonal imbalance, reduced amylase activity, affected differentiation of embryonic root elongation zone tissues, suppressed embryonic root and shoot growth, and impaired pollen tube elongation
OsDim1	Os10g0486600	LOC_Os10g34520	pollen	The expression pattern of OsDim1 in rice and its proposed function.	In summary, we propose OsDim1 plays an important role in seedling growth and pollen tube elongation, and has pleiotropic effects on reproductive tissues
OsDim1	Os10g0486600	LOC_Os10g34520	panicle	The expression pattern of OsDim1 in rice and its proposed function.	In contrast, overexpression of OsDim1 showed significant growth in embryonic roots and shoots, while it increased culm length, total number of tillers per plant, seed setting rate, and total number of grains per panicle compared to its wild type line
OsDim1	Os10g0486600	LOC_Os10g34520	seedling	The expression pattern of OsDim1 in rice and its proposed function.	The findings presented in this paper suggest that OsDim1 is important in early seedling development, pollen tube elongation, and impacts rice yield components
OsDim1	Os10g0486600	LOC_Os10g34520	seedling	The expression pattern of OsDim1 in rice and its proposed function.	In summary, we propose OsDim1 plays an important role in seedling growth and pollen tube elongation, and has pleiotropic effects on reproductive tissues
OsDim1	Os10g0486600	LOC_Os10g34520	grains per panicle	The expression pattern of OsDim1 in rice and its proposed function.	In contrast, overexpression of OsDim1 showed significant growth in embryonic roots and shoots, while it increased culm length, total number of tillers per plant, seed setting rate, and total number of grains per panicle compared to its wild type line
OsDim1	Os10g0486600	LOC_Os10g34520	seed	The expression pattern of OsDim1 in rice and its proposed function.	In contrast, overexpression of OsDim1 showed significant growth in embryonic roots and shoots, while it increased culm length, total number of tillers per plant, seed setting rate, and total number of grains per panicle compared to its wild type line
OsDim1	Os10g0486600	LOC_Os10g34520	yield	The expression pattern of OsDim1 in rice and its proposed function.	The findings presented in this paper suggest that OsDim1 is important in early seedling development, pollen tube elongation, and impacts rice yield components
OsDim1	Os10g0486600	LOC_Os10g34520	root elongation	The expression pattern of OsDim1 in rice and its proposed function.	According to the present study findings, RNAi mediated knockdown of OsDim1 resulted in phytohormonal imbalance, reduced amylase activity, affected differentiation of embryonic root elongation zone tissues, suppressed embryonic root and shoot growth, and impaired pollen tube elongation
OsDim1	Os10g0486600	LOC_Os10g34520	reproductive	The expression pattern of OsDim1 in rice and its proposed function.	In summary, we propose OsDim1 plays an important role in seedling growth and pollen tube elongation, and has pleiotropic effects on reproductive tissues
OsDim1	Os10g0486600	LOC_Os10g34520	culm	The expression pattern of OsDim1 in rice and its proposed function.	In contrast, overexpression of OsDim1 showed significant growth in embryonic roots and shoots, while it increased culm length, total number of tillers per plant, seed setting rate, and total number of grains per panicle compared to its wild type line
OsDIRP1	Os06g0687200	LOC_Os06g47270	temperature	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	OsDIRP1 expression was induced by drought, high salinity, and abscisic acid (ABA) treatment, but not by low temperature (4C) stress, suggesting that OsDIRP1 is differentially regulated by different abiotic stresses
OsDIRP1	Os06g0687200	LOC_Os06g47270	drought	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	These results suggest that OsDIRP1 acts as a negative regulator during drought and salt stress, whereas it functions as a positive factor during the cold stress response in rice
OsDIRP1	Os06g0687200	LOC_Os06g47270	salt	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	These results suggest that OsDIRP1 acts as a negative regulator during drought and salt stress, whereas it functions as a positive factor during the cold stress response in rice
OsDIRP1	Os06g0687200	LOC_Os06g47270	cold stress	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	These results suggest that OsDIRP1 acts as a negative regulator during drought and salt stress, whereas it functions as a positive factor during the cold stress response in rice
OsDIRP1	Os06g0687200	LOC_Os06g47270	abiotic stress	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	OsDIRP1 expression was induced by drought, high salinity, and abscisic acid (ABA) treatment, but not by low temperature (4C) stress, suggesting that OsDIRP1 is differentially regulated by different abiotic stresses
OsDIRP1	Os06g0687200	LOC_Os06g47270	salt stress	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	These results suggest that OsDIRP1 acts as a negative regulator during drought and salt stress, whereas it functions as a positive factor during the cold stress response in rice
OsDIRP1	Os06g0687200	LOC_Os06g47270	stress	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	These results suggest that OsDIRP1 acts as a negative regulator during drought and salt stress, whereas it functions as a positive factor during the cold stress response in rice
OsDIRP1	Os06g0687200	LOC_Os06g47270	biotic stress	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	OsDIRP1 expression was induced by drought, high salinity, and abscisic acid (ABA) treatment, but not by low temperature (4C) stress, suggesting that OsDIRP1 is differentially regulated by different abiotic stresses
OsDIRP1	Os06g0687200	LOC_Os06g47270	Ubiquitin	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	In this study, we identified and characterized OsDIRP1 (Oryza sativa Drought-Induced RING Protein 1), a nuclear-localized putative RING E3 ubiquitin (Ub) ligase in rice (Oryza sativa L
OsDIRP1	Os06g0687200	LOC_Os06g47270	abscisic acid	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	OsDIRP1 expression was induced by drought, high salinity, and abscisic acid (ABA) treatment, but not by low temperature (4C) stress, suggesting that OsDIRP1 is differentially regulated by different abiotic stresses
OsDIRP1	Os06g0687200	LOC_Os06g47270	stress response	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (Oryza sativa L.).	These results suggest that OsDIRP1 acts as a negative regulator during drought and salt stress, whereas it functions as a positive factor during the cold stress response in rice
OsDIS1	Os03g0356414	LOC_Os03g24040	salt	OsDIS1-mediated stress response pathway in rice	Here we also show that OsDIS1 interacts with OsSKIPa, a drought and salt stress positive regulator in rice
OsDIS1	Os03g0356414	LOC_Os03g24040	drought tolerance	The SINA E3 ligase OsDIS1 negatively regulates drought response in rice	Overexpression of OsDIS1 reduced drought tolerance in transgenic rice plants, while RNA interference silencing of OsDIS1 enhanced drought tolerance
OsDIS1	Os03g0356414	LOC_Os03g24040	salt stress	OsDIS1-mediated stress response pathway in rice	Here we also show that OsDIS1 interacts with OsSKIPa, a drought and salt stress positive regulator in rice
OsDIS1	Os03g0356414	LOC_Os03g24040	drought	OsDIS1-mediated stress response pathway in rice	We recently showed that OsDIS1 (Oryza sativa drought-induced SINA protein 1), a SINA type E3 ligase, is involved in the drought-stress signal transduction in rice
OsDIS1	Os03g0356414	LOC_Os03g24040	drought	OsDIS1-mediated stress response pathway in rice	OsDIS1 plays a negative role in drought stress tolerance through the transcriptional regulation of diverse stress-related genes and also possibly through the posttranslational regulation of its interacting protein OsNek6 in rice
OsDIS1	Os03g0356414	LOC_Os03g24040	drought	OsDIS1-mediated stress response pathway in rice	Here we also show that OsDIS1 interacts with OsSKIPa, a drought and salt stress positive regulator in rice
OsDIS1	Os03g0356414	LOC_Os03g24040	drought	The SINA E3 ligase OsDIS1 negatively regulates drought response in rice	Here, we report that OsDIS1 (for Oryza sativa drought-induced SINA protein 1), a C3HC4 RING finger E3 ligase, is involved in drought-stress signal transduction in rice (O
OsDIS1	Os03g0356414	LOC_Os03g24040	drought	The SINA E3 ligase OsDIS1 negatively regulates drought response in rice	The expression of OsDIS1 was up-regulated by drought treatment
OsDIS1	Os03g0356414	LOC_Os03g24040	drought	The SINA E3 ligase OsDIS1 negatively regulates drought response in rice	Overexpression of OsDIS1 reduced drought tolerance in transgenic rice plants, while RNA interference silencing of OsDIS1 enhanced drought tolerance
OsDIS1	Os03g0356414	LOC_Os03g24040	drought	The SINA E3 ligase OsDIS1 negatively regulates drought response in rice	Microarray analysis revealed that a large number of drought-responsive genes were induced or suppressed in the OsDIS1 overexpression plants under normal and drought conditions
OsDIS1	Os03g0356414	LOC_Os03g24040	drought	The SINA E3 ligase OsDIS1 negatively regulates drought response in rice	Together, these results demonstrate that OsDIS1 plays a negative role in drought stress tolerance through transcriptional regulation of diverse stress-related genes and possibly through posttranslational regulation of OsNek6 in rice
OsDIS1	Os03g0356414	LOC_Os03g24040	drought	The SINA E3 ligase OsDIS1 negatively regulates drought response in rice	The SINA E3 ligase OsDIS1 negatively regulates drought response in rice
OsDjA6	Os04g0549600	LOC_Os04g46390	resistance	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	Silencing of OsDjA6 in transgenic rice enhances resistance to M
OsDjA6	Os04g0549600	LOC_Os04g46390	resistance	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	In addition, the expression levels of WRKY45, NPR1, and PR5 are increased in the OsDjA6 RNAi plants, indicating that OsDjA6 may mediate resistance by affecting the salicylic acid pathway
OsDjA6	Os04g0549600	LOC_Os04g46390	salicylic acid	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	In addition, the expression levels of WRKY45, NPR1, and PR5 are increased in the OsDjA6 RNAi plants, indicating that OsDjA6 may mediate resistance by affecting the salicylic acid pathway
OsDjA6	Os04g0549600	LOC_Os04g46390	blast	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.
OsDjA6	Os04g0549600	LOC_Os04g46390	magnaporthe oryzae	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.
OsDjA6	Os04g0549600	LOC_Os04g46390	immunity	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.
OsDjA6	Os04g0549600	LOC_Os04g46390	innate immunity	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.
OsDjA6	Os04g0549600	LOC_Os04g46390	innate immunity	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	These results suggest that the DnaJ protein OsDjA6 negatively regulates rice innate immunity, probably via the ubiquitination proteasome degradation pathway
OsDjA7	Os05g0333500	LOC_Os05g26902	chloroplast	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa)	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa)
OsDjA7	Os05g0333500	LOC_Os05g26902	chloroplast development	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa)	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa)
OsDjA8	Os05g0334400	LOC_Os05g26954|LOC_Os05g26926	chloroplast	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa)	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa)
OsDjA8	Os05g0334400	LOC_Os05g26954|LOC_Os05g26926	chloroplast development	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa)	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa)
OsDjA9	Os06g0116800	LOC_Os06g02620	resistance	A fungal effector targets a heat shock-dynamin protein complex to modulate mitochondrial dynamics and reduce plant immunity	oryzae Overexpression of OsDjA9 or knockout of OsDRP1E in transgenic rice, in contrast, leads to elongated mitochondria and enhanced resistance to M
OsDjA9	Os06g0116800	LOC_Os06g02620	mitochondria	A fungal effector targets a heat shock-dynamin protein complex to modulate mitochondrial dynamics and reduce plant immunity	Knockout of OsDjA9 or overexpression of OsDRP1E or MoCDIP4 in transgenic rice results in shortened mitochondria and enhanced susceptibility to M
OsDjA9	Os06g0116800	LOC_Os06g02620	mitochondria	A fungal effector targets a heat shock-dynamin protein complex to modulate mitochondrial dynamics and reduce plant immunity	oryzae Overexpression of OsDjA9 or knockout of OsDRP1E in transgenic rice, in contrast, leads to elongated mitochondria and enhanced resistance to M
OsDjC46	Os04g0687300	LOC_Os04g59060	seedlings	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Here, various stimuli, such as abscisic acid (ABA), hydrogen peroxidase (H(2)O(2)), polyethylene (PEG) and sodium chloride (NaCl) markedly induced the expression of OsDjC46 in the seedlings
OsDjC46	Os04g0687300	LOC_Os04g59060	resistance	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Heat shock protein has been shown to increase plant resistance to stresses, but whether OsDjC46 was a key factor in plant response to various stresses has not been reported
OsDjC46	Os04g0687300	LOC_Os04g59060	defense	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.
OsDjC46	Os04g0687300	LOC_Os04g59060	defense	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Taken together, these findings reveal a novel function of OsDjC46 in adjusting ABA-induced antioxidant defense
OsDjC46	Os04g0687300	LOC_Os04g59060	drought	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Overexpression of OsDjC46 in rice can enhance the tolerance to salinity and drought; in contrast, knockout of OsDjC46 rice plants was more sensitive to salt stress and drought
OsDjC46	Os04g0687300	LOC_Os04g59060	drought	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Further investigation revealed that OsDjC46 could participate in regulating the expression and activities of antioxidant of SOD and CAT under drought and salt stress
OsDjC46	Os04g0687300	LOC_Os04g59060	salinity	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Overexpression of OsDjC46 in rice can enhance the tolerance to salinity and drought; in contrast, knockout of OsDjC46 rice plants was more sensitive to salt stress and drought
OsDjC46	Os04g0687300	LOC_Os04g59060	salt	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Overexpression of OsDjC46 in rice can enhance the tolerance to salinity and drought; in contrast, knockout of OsDjC46 rice plants was more sensitive to salt stress and drought
OsDjC46	Os04g0687300	LOC_Os04g59060	salt	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Further investigation revealed that OsDjC46 could participate in regulating the expression and activities of antioxidant of SOD and CAT under drought and salt stress
OsDjC46	Os04g0687300	LOC_Os04g59060	tolerance	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Overexpression of OsDjC46 in rice can enhance the tolerance to salinity and drought; in contrast, knockout of OsDjC46 rice plants was more sensitive to salt stress and drought
OsDjC46	Os04g0687300	LOC_Os04g59060	salt stress	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Overexpression of OsDjC46 in rice can enhance the tolerance to salinity and drought; in contrast, knockout of OsDjC46 rice plants was more sensitive to salt stress and drought
OsDjC46	Os04g0687300	LOC_Os04g59060	salt stress	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Further investigation revealed that OsDjC46 could participate in regulating the expression and activities of antioxidant of SOD and CAT under drought and salt stress
OsDjC46	Os04g0687300	LOC_Os04g59060	stress	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Overexpression of OsDjC46 in rice can enhance the tolerance to salinity and drought; in contrast, knockout of OsDjC46 rice plants was more sensitive to salt stress and drought
OsDjC46	Os04g0687300	LOC_Os04g59060	stress	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Further investigation revealed that OsDjC46 could participate in regulating the expression and activities of antioxidant of SOD and CAT under drought and salt stress
OsDjC46	Os04g0687300	LOC_Os04g59060	abscisic acid	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	 Here, various stimuli, such as abscisic acid (ABA), hydrogen peroxidase (H(2)O(2)), polyethylene (PEG) and sodium chloride (NaCl) markedly induced the expression of OsDjC46 in the seedlings
OsDjC46	Os04g0687300	LOC_Os04g59060	antioxidant defense	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice
OsDLK	Os07g0105700	LOC_Os07g01490	mitosis	A rice class-XIV kinesin enters the nucleus in response to cold.	 When tobacco cells overexpressing OsDLK are synchronised, they exhibit a delayed entry into metaphase, while the later phases of mitosis are accelerated
OsDLK	Os07g0105700	LOC_Os07g01490	development	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 This analysis of loss-of-function mutants in rice indicates that OsDLK participates in cell elongation during development
OsDLK	Os07g0105700	LOC_Os07g01490	nucleus	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.
OsDLK	Os07g0105700	LOC_Os07g01490	nucleus	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 One of these motors, OsDLK (Dual Localisation Kinesin from rice), decorates cortical microtubules but moves into the nucleus in response to cold stress
OsDLK	Os07g0105700	LOC_Os07g01490	nucleus	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 Since OsDLK harbours both a nuclear localisation signal and a putative leucin zipper, we asked whether the cold-induced import of OsDLK into the nucleus might correlate with specific DNA binding
OsDLK	Os07g0105700	LOC_Os07g01490	nucleus	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 These findings are discussed as a working model, where, in response to cold stress, OsDLK partitions from cortical microtubules at the plasma membrane into the nucleus and specifically modulates the expression of genes involved in cold adaptation
OsDLK	Os07g0105700	LOC_Os07g01490	cold stress	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 One of these motors, OsDLK (Dual Localisation Kinesin from rice), decorates cortical microtubules but moves into the nucleus in response to cold stress
OsDLK	Os07g0105700	LOC_Os07g01490	cold stress	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 These findings are discussed as a working model, where, in response to cold stress, OsDLK partitions from cortical microtubules at the plasma membrane into the nucleus and specifically modulates the expression of genes involved in cold adaptation
OsDLK	Os07g0105700	LOC_Os07g01490	stress	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 One of these motors, OsDLK (Dual Localisation Kinesin from rice), decorates cortical microtubules but moves into the nucleus in response to cold stress
OsDLK	Os07g0105700	LOC_Os07g01490	cold	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 One of these motors, OsDLK (Dual Localisation Kinesin from rice), decorates cortical microtubules but moves into the nucleus in response to cold stress
OsDLK	Os07g0105700	LOC_Os07g01490	cold	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 These findings are discussed as a working model, where, in response to cold stress, OsDLK partitions from cortical microtubules at the plasma membrane into the nucleus and specifically modulates the expression of genes involved in cold adaptation
OsDLK	Os07g0105700	LOC_Os07g01490	cell elongation	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 This analysis of loss-of-function mutants in rice indicates that OsDLK participates in cell elongation during development
OsDLK	Os07g0105700	LOC_Os07g01490	plasma membrane	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	 These findings are discussed as a working model, where, in response to cold stress, OsDLK partitions from cortical microtubules at the plasma membrane into the nucleus and specifically modulates the expression of genes involved in cold adaptation
OsDMAS1	Os03g0237100	LOC_Os03g13390	homeostasis	Paralogs and mutants show that one DMA synthase functions in Fe homeostasis in rice.	In addition, the knock-down of OsDMAS1 significantly up-regulates the genes involved in Fe uptake and homeostasis
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	sterility	OsDMC1 is required for homologous pairing in Oryza sativa	The OsDMC1-RNAi lines grew normally during their vegetative phase but showed spikelet and pollen sterility
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	sterility	OsDMC1 is required for homologous pairing in Oryza sativa	The sterility phenotypes were associated with down-regulated OsDMC1 transcript and protein levels mediated by RNAi
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	root	Isolation and characterization of OsDMC1 , the rice homologue of the yeast DMC1 gene essential for meiosis	OsDMC1 was expressed at high-levels in reproductive organs, low-levels in roots, and undetectable levels in leaves and seedlings
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	pollen	OsDMC1 is required for homologous pairing in Oryza sativa	The OsDMC1-RNAi lines grew normally during their vegetative phase but showed spikelet and pollen sterility
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	spikelet	OsDMC1 is required for homologous pairing in Oryza sativa	The OsDMC1-RNAi lines grew normally during their vegetative phase but showed spikelet and pollen sterility
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiosis	Isolation and characterization of OsDMC1 , the rice homologue of the yeast DMC1 gene essential for meiosis	Isolation and characterization of OsDMC1 , the rice homologue of the yeast DMC1 gene essential for meiosis
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	reproductive	Isolation and characterization of OsDMC1 , the rice homologue of the yeast DMC1 gene essential for meiosis	OsDMC1 was expressed at high-levels in reproductive organs, low-levels in roots, and undetectable levels in leaves and seedlings
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiotic	OsDMC1 is required for homologous pairing in Oryza sativa	Further cytological observations of male meiocytes revealed that knock-down of OsDMC1 led to defects in bivalent formation and subsequent unequal chromosome segregation and irregular spore generation, and induced changes in male meiotic progression
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	vegetative	OsDMC1 is required for homologous pairing in Oryza sativa	The OsDMC1-RNAi lines grew normally during their vegetative phase but showed spikelet and pollen sterility
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiotic	DNA strand exchange activity of rice recombinase OsDmc1 monitored by fluorescence resonance energy transfer and the role of ATP hydrolysis	DNA binding and pairing activities of Oryza sativa disrupted meiotic cDNA1 (OsDmc1) from rice have been reported earlier
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	anther	DNA binding and pairing activity of OsDmc1, a recombinase from rice	A cloned cDNA corresponding to OsDMC1 from rice anther tissue was expressed in Escherichia coli
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiosis	OsDMC1 is required for homologous pairing in Oryza sativa	Here, we analyzed the function of OsDMC1 in meiosis using an RNA interference approach
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiosis	OsDMC1 is required for homologous pairing in Oryza sativa	These data indicate that OsDMC1 is essential for rice meiosis and plays an important role in homologous pairing
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	seedling	Isolation and characterization of OsDMC1 , the rice homologue of the yeast DMC1 gene essential for meiosis	OsDMC1 was expressed at high-levels in reproductive organs, low-levels in roots, and undetectable levels in leaves and seedlings
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiosis	Filament formation and robust strand exchange activities of the rice DMC1A and DMC1B proteins.	These biochemical differences between the DMC1A and DMC1B proteins may provide important insight into their functional differences during meiosis in rice
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiotic	OsDMC1 is not required for homologous pairing in rice meiosis.	Moreover, OsDMC1 was not detected in pairing-defective mutants, such as pair2, pair3, Oscom1 and Osrad51c, while it was loaded onto meiotic chromosomes in zep1, Osmer3, Oszip4 and Oshei10
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	crossover	OsDMC1 is not required for homologous pairing in rice meiosis.	The reduced number of bivalents and abnormal OsHEI10 foci in Osdmc1a Osdmc1b establishes an essential role for OsDMC1 in crossover formation
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiosis	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	 These results indicate that OsBRCA2 is essential for facilitating the loading of OsRAD51 and OsDMC1 onto resected ends of programmed double-strand breaks (DSB) during meiosis to promote single-end invasions of homologous chromosomes and accurate recombination
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiotic	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	 In the absence of OsBRCA2, localization to the meiotic chromosome axes of the strand-invasion proteins OsRAD51 and OsDMC1 is severely reduced and in vitro OsBRCA2 directly interacts with OsRAD51 and OsDMC1
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiosis	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 In the homologous recombination pathway, the detailed mechanisms of how OsRAD51 and OsDMC1 work in rice meiosis remain to be explored
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	meiosis	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 In addition, both OsRAD51 and OsDMC1 can interact with OsFIGL1 and OsBRCA2, two important components in rice meiosis
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	homologous recombination	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 In the homologous recombination pathway, the detailed mechanisms of how OsRAD51 and OsDMC1 work in rice meiosis remain to be explored
OsDMC1|DMC1B|OsDMC1B	Os11g0146800	LOC_Os11g04954	recombination	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 In the homologous recombination pathway, the detailed mechanisms of how OsRAD51 and OsDMC1 work in rice meiosis remain to be explored
OsDML4	Os06g0237900	LOC_Os06g13070	transcription factor	A new demethylase gene, OsDML4, is involved in high temperature-increased grain chalkiness in rice.	 The expression of two transcription factor genes RISBZ1 and RPBF was significantly decreased in the osdml4 mutants, which caused adverse effects on the formation of protein bodies (PBs) with greatly decreased PB-II number, and incomplete and abnormally shaped PB-IIs
OsDML4	Os06g0237900	LOC_Os06g13070	temperature	A new demethylase gene, OsDML4, is involved in high temperature-increased grain chalkiness in rice.	 No significant difference was detected between the wild type and osdml4 mutants under normal temperature
OsDML4	Os06g0237900	LOC_Os06g13070	endosperm	A new demethylase gene, OsDML4, is involved in high temperature-increased grain chalkiness in rice.	 Here, we identified a new demethylase gene OsDML4 and discovered its function in cytosine demethylation to affect endosperm formation
OsDML4	Os06g0237900	LOC_Os06g13070	endosperm	A new demethylase gene, OsDML4, is involved in high temperature-increased grain chalkiness in rice.	 Loss of function of OsDML4 induced chalky endosperm only under HT and dramatically reduced the transcription and accumulation of glutelins and 16 kDa prolamin
OsDML4	Os06g0237900	LOC_Os06g13070	prolamin	A new demethylase gene, OsDML4, is involved in high temperature-increased grain chalkiness in rice.	 Loss of function of OsDML4 induced chalky endosperm only under HT and dramatically reduced the transcription and accumulation of glutelins and 16 kDa prolamin
OsDML4	Os06g0237900	LOC_Os06g13070	demethylation	A new demethylase gene, OsDML4, is involved in high temperature-increased grain chalkiness in rice.	 Here, we identified a new demethylase gene OsDML4 and discovered its function in cytosine demethylation to affect endosperm formation
OsdNK2	Os01g0874100	LOC_Os01g65350	plant growth	WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.	In particular, the expression levels of OsdNK2 in mature leaves, stems, sheathes, and panicles were much higher than WSL8 (Fig. 7a), suggesting OsdNK2 might play a major role in the later stages of plant growth.
OsdNK2	Os01g0874100	LOC_Os01g65350	growth	WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.	Hence, we deduced the OsdNK2 might partially compensate the function of WSL8 at the late stages of rice growth.
OsDof1	NONE	LOC_Os01g09720	tolerance	Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.).	 CONCLUSIONS: Our investigation identified OsDof1 as a potential target for genetic breeding of rice with enhanced cold tolerance
OsDof1	NONE	LOC_Os01g09720	cold tolerance	Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.).	 CONCLUSIONS: Our investigation identified OsDof1 as a potential target for genetic breeding of rice with enhanced cold tolerance
OsDof1	NONE	LOC_Os01g09720	cold stress	Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.).	 We and OsDof19-overexpression and RNAi lines and found that OsDof1 showed a response to cold stress
OsDof1	NONE	LOC_Os01g09720	stress	Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.).	 We and OsDof19-overexpression and RNAi lines and found that OsDof1 showed a response to cold stress
OsDof1	NONE	LOC_Os01g09720	breeding	Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.).	 CONCLUSIONS: Our investigation identified OsDof1 as a potential target for genetic breeding of rice with enhanced cold tolerance
OsDof1	NONE	LOC_Os01g09720	cold	Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.).	 We and OsDof19-overexpression and RNAi lines and found that OsDof1 showed a response to cold stress
OsDof1	NONE	LOC_Os01g09720	cold	Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.).	 CONCLUSIONS: Our investigation identified OsDof1 as a potential target for genetic breeding of rice with enhanced cold tolerance
OsDOF11	Os02g0707200	LOC_Os02g47810	transcription factor	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.
OsDOF11	Os02g0707200	LOC_Os02g47810	seedlings	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	 Although sucrose enhanced root elongation in young wild-type (WT) seedlings, this did not occur in osdof11 seedlings due to reduced sucrose uptake
OsDOF11	Os02g0707200	LOC_Os02g47810	root	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	 Although sucrose enhanced root elongation in young wild-type (WT) seedlings, this did not occur in osdof11 seedlings due to reduced sucrose uptake
OsDOF11	Os02g0707200	LOC_Os02g47810	root elongation	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	 Although sucrose enhanced root elongation in young wild-type (WT) seedlings, this did not occur in osdof11 seedlings due to reduced sucrose uptake
OsDOF11	Os02g0707200	LOC_Os02g47810	transporter	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.
OsDOF11	Os02g0707200	LOC_Os02g47810	sugar	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.
OsDOF11	Os02g0707200	LOC_Os02g47810	sugar	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	 Sugar transport rate analyses revealed that less sugar was transported in osdof11 plants than in the WT
OsDOF11	Os02g0707200	LOC_Os02g47810	sugar	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	 We also observed that osdof11 mutant plants were less susceptible to infection by Xanthomonas oryzae pathovar oryzae, suggesting that OsDOF11 participates in sugar distribution during pathogenic invasions
OsDOF11	Os02g0707200	LOC_Os02g47810	sugar	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	 Collectively, these results suggest that OsDOF11 modulates sugar transport by regulating expression of SUT and SWEET genes in rice
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	 Although sucrose enhanced root elongation in young wild-type (WT) seedlings, this did not occur in osdof11 seedlings due to reduced sucrose uptake
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	 Chromatin immunoprecipitation experiments showed that OsDOF11 directly binds to the promoter regions of SUT1, OsSWEET11, and OsSWEET14, indicating that OsDOF11 coordinately controls transporters that are responsible for sucrose transport via apoplastic loading
OsDOF11	Os02g0707200	LOC_Os02g47810	As transport	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	 Sugar transport rate analyses revealed that less sugar was transported in osdof11 plants than in the WT
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose transporter	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET genes.
OsDOF11	Os02g0707200	LOC_Os02g47810	nitrogen	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).
OsDOF11	Os02g0707200	LOC_Os02g47810	nitrogen	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Here, we note that OsDOF11 promotes nitrogen uptake and then maintains the ratio of fresh weight to dry weight in seedling plants and the effective leaf blade at flowering stages
OsDOF11	Os02g0707200	LOC_Os02g47810	nitrogen	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Both sugar and organic nitrogen changes caused the ratio of fresh weight to dry weight to decrease in OsDOF11 mutant seedling plants and mature leaves, which might result in vigorous reduced metabolic activity and become less susceptible to stress
OsDOF11	Os02g0707200	LOC_Os02g47810	nitrogen	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 These results demonstrated that OsDOF11 affected nitrogen metabolism by sugar distribution in rice, which provided new insight that OsDOF11 coordinated with C and N balance to maintain plant growth activity
OsDOF11	Os02g0707200	LOC_Os02g47810	leaf	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Here, we note that OsDOF11 promotes nitrogen uptake and then maintains the ratio of fresh weight to dry weight in seedling plants and the effective leaf blade at flowering stages
OsDOF11	Os02g0707200	LOC_Os02g47810	growth	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 These results demonstrated that OsDOF11 affected nitrogen metabolism by sugar distribution in rice, which provided new insight that OsDOF11 coordinated with C and N balance to maintain plant growth activity
OsDOF11	Os02g0707200	LOC_Os02g47810	seedling	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Here, we note that OsDOF11 promotes nitrogen uptake and then maintains the ratio of fresh weight to dry weight in seedling plants and the effective leaf blade at flowering stages
OsDOF11	Os02g0707200	LOC_Os02g47810	seedling	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Both sugar and organic nitrogen changes caused the ratio of fresh weight to dry weight to decrease in OsDOF11 mutant seedling plants and mature leaves, which might result in vigorous reduced metabolic activity and become less susceptible to stress
OsDOF11	Os02g0707200	LOC_Os02g47810	stress	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Both sugar and organic nitrogen changes caused the ratio of fresh weight to dry weight to decrease in OsDOF11 mutant seedling plants and mature leaves, which might result in vigorous reduced metabolic activity and become less susceptible to stress
OsDOF11	Os02g0707200	LOC_Os02g47810	transporter	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Mutants of the sucrose transporter gene OsSWEET14 displayed a phenotype similar to that of OsDOF11
OsDOF11	Os02g0707200	LOC_Os02g47810	plant growth	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 These results demonstrated that OsDOF11 affected nitrogen metabolism by sugar distribution in rice, which provided new insight that OsDOF11 coordinated with C and N balance to maintain plant growth activity
OsDOF11	Os02g0707200	LOC_Os02g47810	sugar	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Both sugar and organic nitrogen changes caused the ratio of fresh weight to dry weight to decrease in OsDOF11 mutant seedling plants and mature leaves, which might result in vigorous reduced metabolic activity and become less susceptible to stress
OsDOF11	Os02g0707200	LOC_Os02g47810	sugar	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 These results demonstrated that OsDOF11 affected nitrogen metabolism by sugar distribution in rice, which provided new insight that OsDOF11 coordinated with C and N balance to maintain plant growth activity
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Mutants of the sucrose transporter gene OsSWEET14 displayed a phenotype similar to that of OsDOF11
OsDOF11	Os02g0707200	LOC_Os02g47810	flowering	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Here, we note that OsDOF11 promotes nitrogen uptake and then maintains the ratio of fresh weight to dry weight in seedling plants and the effective leaf blade at flowering stages
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose transporter	OsDOF11 Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (Oryza sativa L.).	 Mutants of the sucrose transporter gene OsSWEET14 displayed a phenotype similar to that of OsDOF11
OsDOF11	Os02g0707200	LOC_Os02g47810	cytokinin	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.
OsDOF11	Os02g0707200	LOC_Os02g47810	cytokinin	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.	 Here, we found that OsDOF11 loss-of-function mutants showed a semi-dwarf phenotype with a smaller cell length due to increased cytokinin content in source tissues
OsDOF11	Os02g0707200	LOC_Os02g47810	cytokinin	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.	 RNA sequencing and reverse transcription quantitative PCR analyses revealed that genes involved in cytokinin signaling and metabolism were affected in osdof11 mutants
OsDOF11	Os02g0707200	LOC_Os02g47810	cytokinin	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.	 sativa VIN3-LIKE 2 caused an increase in active cytokinin levels and induced OsDOF11 transcript levels
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose transport	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.
OsDOF11	Os02g0707200	LOC_Os02g47810	nitrogen	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 We note that the loss function of OsDOF11 displays the reduced crown roots number, low activity of nitrogen assimilation and low content of cytokinin and auxin
OsDOF11	Os02g0707200	LOC_Os02g47810	root	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.
OsDOF11	Os02g0707200	LOC_Os02g47810	root	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 RESULTS: We demonstrate the role of OsDOF11 in root development
OsDOF11	Os02g0707200	LOC_Os02g47810	root	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	0% sucrose (MS30) by OsDOF11 in rice root
OsDOF11	Os02g0707200	LOC_Os02g47810	root	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 CONCLUSIONS: OsDOF11 promotes crown root formation via cytokinin in oryza sativa
OsDOF11	Os02g0707200	LOC_Os02g47810	root	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 These results provide a physiological basis for further analysis of the OsDOF11 function of in rice root development
OsDOF11	Os02g0707200	LOC_Os02g47810	development	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 RESULTS: We demonstrate the role of OsDOF11 in root development
OsDOF11	Os02g0707200	LOC_Os02g47810	development	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 These results provide a physiological basis for further analysis of the OsDOF11 function of in rice root development
OsDOF11	Os02g0707200	LOC_Os02g47810	auxin	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 We note that the loss function of OsDOF11 displays the reduced crown roots number, low activity of nitrogen assimilation and low content of cytokinin and auxin
OsDOF11	Os02g0707200	LOC_Os02g47810	root development	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 RESULTS: We demonstrate the role of OsDOF11 in root development
OsDOF11	Os02g0707200	LOC_Os02g47810	root development	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 These results provide a physiological basis for further analysis of the OsDOF11 function of in rice root development
OsDOF11	Os02g0707200	LOC_Os02g47810	cytokinin	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.
OsDOF11	Os02g0707200	LOC_Os02g47810	cytokinin	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 Exogenous application of cytokinin and [13C] sucrose labeled stable isotope uptake experiments help us to explain the relationship between OsDOF11 and cytokinin
OsDOF11	Os02g0707200	LOC_Os02g47810	cytokinin	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 We note that the loss function of OsDOF11 displays the reduced crown roots number, low activity of nitrogen assimilation and low content of cytokinin and auxin
OsDOF11	Os02g0707200	LOC_Os02g47810	cytokinin	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 CONCLUSIONS: OsDOF11 promotes crown root formation via cytokinin in oryza sativa
OsDOF11	Os02g0707200	LOC_Os02g47810	crown	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.
OsDOF11	Os02g0707200	LOC_Os02g47810	crown	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 We note that the loss function of OsDOF11 displays the reduced crown roots number, low activity of nitrogen assimilation and low content of cytokinin and auxin
OsDOF11	Os02g0707200	LOC_Os02g47810	crown	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 CONCLUSIONS: OsDOF11 promotes crown root formation via cytokinin in oryza sativa
OsDOF11	Os02g0707200	LOC_Os02g47810	crown root	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.
OsDOF11	Os02g0707200	LOC_Os02g47810	crown root	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 We note that the loss function of OsDOF11 displays the reduced crown roots number, low activity of nitrogen assimilation and low content of cytokinin and auxin
OsDOF11	Os02g0707200	LOC_Os02g47810	crown root	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 CONCLUSIONS: OsDOF11 promotes crown root formation via cytokinin in oryza sativa
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	 Exogenous application of cytokinin and [13C] sucrose labeled stable isotope uptake experiments help us to explain the relationship between OsDOF11 and cytokinin
OsDOF11	Os02g0707200	LOC_Os02g47810	sucrose	OsDOF11 Promotes Crown Root Formation via Cytokinin in Oryza Sativa.	0% sucrose (MS30) by OsDOF11 in rice root
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	flowering time	Functional characterization of rice OsDof12	The transgenic lines overexpressing OsDof12 showed early flowering under long-day (LD) conditions, whereas OsDof12 overexpression had no effect on flowering time under short-day (SD) conditions
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	flower	Functional characterization of rice OsDof12	The transgenic lines overexpressing OsDof12 showed early flowering under long-day (LD) conditions, whereas OsDof12 overexpression had no effect on flowering time under short-day (SD) conditions
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	flower	Functional characterization of rice OsDof12	These results suggested that OsDof12 might regulate flowering by controlling the expression of Hd3a and OsMADS14
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	leaf	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Here, we further investigated the other important agronomical traits of the transgenic plants overexpressing OsDof12 and found that overexpressing OsDof12 could lead to reduced plant height, erected leaf, shortened leaf blade, and smaller panicle resulted from decreased primary and secondary branches number
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	panicle	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Here, we further investigated the other important agronomical traits of the transgenic plants overexpressing OsDof12 and found that overexpressing OsDof12 could lead to reduced plant height, erected leaf, shortened leaf blade, and smaller panicle resulted from decreased primary and secondary branches number
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	architecture	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	architecture	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	These results implied that OsDof12 is involved in rice plant architecture formation
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	architecture	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Taken together, our results suggested that overexpression of OsDof12 could lead to altered plant architecture by suppressing BR signaling
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	breeding	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Thus, OsDof12 might be used as a new potential genetic regulator for future rice molecular breeding
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	BR signaling	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Of note, in WT plants the expression of OsDof12 was found up-regulated by BR treatment while in OsDof12 overexpression plants two positive BR signaling regulators, OsBRI1 and OsBZR1, were significantly down-regulated, indicating that OsDof12 may act as a negative BR regulator in rice
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	BR signaling	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Taken together, our results suggested that overexpression of OsDof12 could lead to altered plant architecture by suppressing BR signaling
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	brassinosteroid	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Furthermore, we performed a series of Brassinosteroid (BR)-responsive tests and found that overexpression of OsDof12 could also result in BR hyposensitivity
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	BR	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Furthermore, we performed a series of Brassinosteroid (BR)-responsive tests and found that overexpression of OsDof12 could also result in BR hyposensitivity
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	BR	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Of note, in WT plants the expression of OsDof12 was found up-regulated by BR treatment while in OsDof12 overexpression plants two positive BR signaling regulators, OsBRI1 and OsBZR1, were significantly down-regulated, indicating that OsDof12 may act as a negative BR regulator in rice
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	BR	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Taken together, our results suggested that overexpression of OsDof12 could lead to altered plant architecture by suppressing BR signaling
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	Brassinosteroid	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Furthermore, we performed a series of Brassinosteroid (BR)-responsive tests and found that overexpression of OsDof12 could also result in BR hyposensitivity
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	plant height	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Here, we further investigated the other important agronomical traits of the transgenic plants overexpressing OsDof12 and found that overexpressing OsDof12 could lead to reduced plant height, erected leaf, shortened leaf blade, and smaller panicle resulted from decreased primary and secondary branches number
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	plant architecture	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	plant architecture	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	These results implied that OsDof12 is involved in rice plant architecture formation
OsDof12|OsCDF1	Os03g0169600	LOC_Os03g07360	plant architecture	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Taken together, our results suggested that overexpression of OsDof12 could lead to altered plant architecture by suppressing BR signaling
OsDOF17	Os04g0567800	LOC_Os04g47990	transcriptional activator	Natural variation in WHITE-CORE RATE 1 regulates redox homeostasis in rice endosperm to affect grain quality.	 OsDOF17 is a transcriptional activator that binds to the AAAAG cis-element in the WCR1A promoter
OsDOF18	Os04g0678400	LOC_Os04g58190	nitrogen	Transcription Factor OsDOF18 Controls Ammonium Uptake by Inducing Ammonium Transporters in Rice Roots.	The growth of null mutants of<U+00A0>OsDOF18 was retarded in a medium containing ammonium as the sole nitrogen source
OsDOF18	Os04g0678400	LOC_Os04g58190	nitrogen	Transcription Factor OsDOF18 Controls Ammonium Uptake by Inducing Ammonium Transporters in Rice Roots.	These results provide evidence that OsDOF18 mediates ammonium transport and nitrogen distribution, which then affects nitrogen use efficiency
OsDOF18	Os04g0678400	LOC_Os04g58190	transcription factor	Transcription Factor OsDOF18 Controls Ammonium Uptake by Inducing Ammonium Transporters in Rice Roots.	Transcription Factor OsDOF18 Controls Ammonium Uptake by Inducing Ammonium Transporters in Rice Roots.
OsDOF18	Os04g0678400	LOC_Os04g58190	growth	Transcription Factor OsDOF18 Controls Ammonium Uptake by Inducing Ammonium Transporters in Rice Roots.	The growth of null mutants of<U+00A0>OsDOF18 was retarded in a medium containing ammonium as the sole nitrogen source
OsDOF18	Os04g0678400	LOC_Os04g58190	transporter	Transcription Factor OsDOF18 Controls Ammonium Uptake by Inducing Ammonium Transporters in Rice Roots.	Among the 10 ammonium transporter genes examined here, expression of OsAMT1;1,<U+00A0>OsAMT1;3, OsAMT2;1, and OsAMT4;1 was reduced in osdof18 mutants, demonstrating that the ammonium transporter genes function downstream of OsDOF18
OsDOF18	Os04g0678400	LOC_Os04g58190	nitrate	Transcription Factor OsDOF18 Controls Ammonium Uptake by Inducing Ammonium Transporters in Rice Roots.	Uptake of ammonium was lower in osdof18 mutants than in the wild type, while that of nitrate was not affected by the mutation
OsDof24	Os07g0685000	LOC_Os07g48570	leaf	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Here, we show a novel function for OsDOF24 as a repressor of leaf senescence in rice (Oryza sativa)
OsDof24	Os07g0685000	LOC_Os07g48570	leaf	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	The gain-of-function mutant osdof24-D, which contains an enhancer-trap T-DNA in the OsDOF24 promoter, exhibited delayed leaf yellowing during NS and DIS
OsDof24	Os07g0685000	LOC_Os07g48570	leaf	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Taken together, our results demonstrate that OsDOF24 suppresses the induction of leaf senescence during vegetative growth by deactivating jasmonate biosynthetic pathways
OsDof24	Os07g0685000	LOC_Os07g48570	leaf senescence	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Here, we show a novel function for OsDOF24 as a repressor of leaf senescence in rice (Oryza sativa)
OsDof24	Os07g0685000	LOC_Os07g48570	leaf senescence	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Taken together, our results demonstrate that OsDOF24 suppresses the induction of leaf senescence during vegetative growth by deactivating jasmonate biosynthetic pathways
OsDof24	Os07g0685000	LOC_Os07g48570	senescence	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Here, we show a novel function for OsDOF24 as a repressor of leaf senescence in rice (Oryza sativa)
OsDof24	Os07g0685000	LOC_Os07g48570	senescence	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	In wild-type leaves, OsDOF24 expression rapidly decreased during natural senescence (NS) and dark-induced senescence (DIS)
OsDof24	Os07g0685000	LOC_Os07g48570	senescence	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Taken together, our results demonstrate that OsDOF24 suppresses the induction of leaf senescence during vegetative growth by deactivating jasmonate biosynthetic pathways
OsDof24	Os07g0685000	LOC_Os07g48570	growth	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Taken together, our results demonstrate that OsDOF24 suppresses the induction of leaf senescence during vegetative growth by deactivating jasmonate biosynthetic pathways
OsDof24	Os07g0685000	LOC_Os07g48570	jasmonate	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Among the phytohormones, only methyl jasmonate induced OsDOF24 expression
OsDof24	Os07g0685000	LOC_Os07g48570	jasmonate	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Taken together, our results demonstrate that OsDOF24 suppresses the induction of leaf senescence during vegetative growth by deactivating jasmonate biosynthetic pathways
OsDof24	Os07g0685000	LOC_Os07g48570	vegetative	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Taken together, our results demonstrate that OsDOF24 suppresses the induction of leaf senescence during vegetative growth by deactivating jasmonate biosynthetic pathways
OsDof24	Os07g0685000	LOC_Os07g48570	methyl jasmonate	Rice DNA-BINDING ONE ZINC FINGER 24 (OsDOF24) Delays Leaf Senescence in a Jasmonate-Mediated Pathway.	Among the phytohormones, only methyl jasmonate induced OsDOF24 expression
OsDof25	Os08g0490100	LOC_Os08g38220	photosynthesis	Functions of OsDof25 in regulation of OsC4PPDK.	Here we report on the analysis of OsDof25 and show a function in regulation of the important C4 photosynthesis gene, OsC4PPDK in rice
OsDof25	Os08g0490100	LOC_Os08g38220	transcriptional activator	Functions of OsDof25 in regulation of OsC4PPDK.	Conclusive evidence for a role of OsDof25 in regulation of C4PPDK came from loss-of-function and gain-of-function experiments with transgenic rice, which showed that down-regulation or over-expression of OsDof25 correlated with OsC4PPDK expression and that OsDof25 has functions as transcriptional activator
OsDOF27	Os10g0496000	LOC_Os10g35300	stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Furthermore, the molecular role of OsDOF27 in thermal stress tolerance has been elucidated
OsDOF27	Os10g0496000	LOC_Os10g35300	stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 The qRT-PCR analysis revealed that OsDOF27 was significantly upregulated under different abiotic stress treatments in rice, particularly under heat stress
OsDOF27	Os10g0496000	LOC_Os10g35300	stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Furthermore, the rice transgenic lines with overexpressing OsDOF27 revealed a positive role in mitigating heat stress tolerance
OsDOF27	Os10g0496000	LOC_Os10g35300	stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Collectively, our results evidently show the intrinsically disorderedness in OsDOF27 and its role in thermal stress response in rice
OsDOF27	Os10g0496000	LOC_Os10g35300	tolerance	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Furthermore, the molecular role of OsDOF27 in thermal stress tolerance has been elucidated
OsDOF27	Os10g0496000	LOC_Os10g35300	tolerance	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Furthermore, the rice transgenic lines with overexpressing OsDOF27 revealed a positive role in mitigating heat stress tolerance
OsDOF27	Os10g0496000	LOC_Os10g35300	abiotic stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 The qRT-PCR analysis revealed that OsDOF27 was significantly upregulated under different abiotic stress treatments in rice, particularly under heat stress
OsDOF27	Os10g0496000	LOC_Os10g35300	abiotic stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 The stress-responsive transcript induction of OsDOF27 was further correlated with enriched abiotic stress-related cis-regulatory elements present in its promoter region
OsDOF27	Os10g0496000	LOC_Os10g35300	biotic stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 The qRT-PCR analysis revealed that OsDOF27 was significantly upregulated under different abiotic stress treatments in rice, particularly under heat stress
OsDOF27	Os10g0496000	LOC_Os10g35300	biotic stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 The stress-responsive transcript induction of OsDOF27 was further correlated with enriched abiotic stress-related cis-regulatory elements present in its promoter region
OsDOF27	Os10g0496000	LOC_Os10g35300	stress tolerance	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Furthermore, the molecular role of OsDOF27 in thermal stress tolerance has been elucidated
OsDOF27	Os10g0496000	LOC_Os10g35300	stress tolerance	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Furthermore, the rice transgenic lines with overexpressing OsDOF27 revealed a positive role in mitigating heat stress tolerance
OsDOF27	Os10g0496000	LOC_Os10g35300	stress response	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Collectively, our results evidently show the intrinsically disorderedness in OsDOF27 and its role in thermal stress response in rice
OsDOF27	Os10g0496000	LOC_Os10g35300	heat stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 The qRT-PCR analysis revealed that OsDOF27 was significantly upregulated under different abiotic stress treatments in rice, particularly under heat stress
OsDOF27	Os10g0496000	LOC_Os10g35300	heat stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Furthermore, the rice transgenic lines with overexpressing OsDOF27 revealed a positive role in mitigating heat stress tolerance
OsDOF27	Os10g0496000	LOC_Os10g35300	Heat Stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 The qRT-PCR analysis revealed that OsDOF27 was significantly upregulated under different abiotic stress treatments in rice, particularly under heat stress
OsDOF27	Os10g0496000	LOC_Os10g35300	Heat Stress	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Furthermore, the rice transgenic lines with overexpressing OsDOF27 revealed a positive role in mitigating heat stress tolerance
OsDOF27	Os10g0496000	LOC_Os10g35300	thermotolerance	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 The in vivo functional analysis of the potential role of OsDOF27 in thermotolerance was further studied in yeast and in planta
OsDOF27	Os10g0496000	LOC_Os10g35300	thermotolerance	Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.	 Ectopic expression of OsDOF27 in yeast implicates thermotolerance response
OsDof4	Os01g0673700	LOC_Os01g48290	transcription factor	Constitutive expression of OsDof4, encoding a C2-C2 zinc finger transcription factor, confesses its distinct flowering effects under long- and short-day photoperiods in rice (Oryza sativa L.).	The subcellular localization experiment and transcriptional activity assay suggested that OsDof4 may function as a transcription factor
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	abiotic stress	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Their stress-inducible expression provided the protection against yield loss in transgenic plants, indicating the agronomic relevance of OsSAP11 and OsRLCK253 in conferring abiotic stress tolerance
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	ga	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	From previous gibberellin (GA) microarray data and A20/AN1 ZFP family member association, we chose Oryza sativa dwarf rice with overexpression of gibberellin-induced gene (OsDOG) to examine its function in the GA pathway
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	ga	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	OsDOG has a novel function in regulating GA homeostasis and in negative maintenance of plant cell elongation in rice
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	dwarf	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	From previous gibberellin (GA) microarray data and A20/AN1 ZFP family member association, we chose Oryza sativa dwarf rice with overexpression of gibberellin-induced gene (OsDOG) to examine its function in the GA pathway
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	dwarf	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	Different transgenic lines with constitutive expression of OsDOG showed dwarf phenotypes due to deficiency of cell elongation
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	salt	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Functionally, both OsSAP11 and OsRLCK253 could improve the water-deficit and salt stress tolerance in transgenic Arabidopsis plants via a signaling pathway affecting the expression of several common endogenous genes
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	yield	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Their stress-inducible expression provided the protection against yield loss in transgenic plants, indicating the agronomic relevance of OsSAP11 and OsRLCK253 in conferring abiotic stress tolerance
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	salt stress	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Functionally, both OsSAP11 and OsRLCK253 could improve the water-deficit and salt stress tolerance in transgenic Arabidopsis plants via a signaling pathway affecting the expression of several common endogenous genes
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	gibberellin	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	From previous gibberellin (GA) microarray data and A20/AN1 ZFP family member association, we chose Oryza sativa dwarf rice with overexpression of gibberellin-induced gene (OsDOG) to examine its function in the GA pathway
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	gibberellin	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	cell elongation	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	Different transgenic lines with constitutive expression of OsDOG showed dwarf phenotypes due to deficiency of cell elongation
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	cell elongation	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	OsDOG has a novel function in regulating GA homeostasis and in negative maintenance of plant cell elongation in rice
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	cell elongation	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice
OsDOG|OsSAP11	Os08g0504700	LOC_Os08g39450	homeostasis	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice	OsDOG has a novel function in regulating GA homeostasis and in negative maintenance of plant cell elongation in rice
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	There were evident promoter and expression differences in OsDOG1L-3 between N22 and Nanjing35, and overexpression or introduction of the N22 OsDOG1L-3 allele in Nanjing35 enhanced its seed dormancy
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 expression was positively correlated with seed dormancy and induced by ABA
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	Overexpression of OsbZIP75 increased OsDOG1L-3 protein abundance and promoted seed dormancy
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	We propose that the N22 OsDOG1L-3 allele is a candidate gene for the seed dormancy in QTL qSd-1-1, and that it participates in the ABA pathway to establish seed dormancy in rice
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	ABA	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 upregulated expression of ABA-related genes and increased ABA content
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	ABA	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	We propose that the N22 OsDOG1L-3 allele is a candidate gene for the seed dormancy in QTL qSd-1-1, and that it participates in the ABA pathway to establish seed dormancy in rice
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	abscisic acid	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	ABA	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 expression was positively correlated with seed dormancy and induced by ABA
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	ABA	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 upregulated expression of ABA-related genes and increased ABA content
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	ABA	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	We propose that the N22 OsDOG1L-3 allele is a candidate gene for the seed dormancy in QTL qSd-1-1, and that it participates in the ABA pathway to establish seed dormancy in rice
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	There were evident promoter and expression differences in OsDOG1L-3 between N22 and Nanjing35, and overexpression or introduction of the N22 OsDOG1L-3 allele in Nanjing35 enhanced its seed dormancy
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 expression was positively correlated with seed dormancy and induced by ABA
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	Overexpression of OsbZIP75 increased OsDOG1L-3 protein abundance and promoted seed dormancy
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	We propose that the N22 OsDOG1L-3 allele is a candidate gene for the seed dormancy in QTL qSd-1-1, and that it participates in the ABA pathway to establish seed dormancy in rice
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	There were evident promoter and expression differences in OsDOG1L-3 between N22 and Nanjing35, and overexpression or introduction of the N22 OsDOG1L-3 allele in Nanjing35 enhanced its seed dormancy
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	OsDOG1L-3 expression was positively correlated with seed dormancy and induced by ABA
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	Overexpression of OsbZIP75 increased OsDOG1L-3 protein abundance and promoted seed dormancy
OsDOG1L-3	Os01g0306400	LOC_Os01g20030	seed dormancy	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice	We propose that the N22 OsDOG1L-3 allele is a candidate gene for the seed dormancy in QTL qSd-1-1, and that it participates in the ABA pathway to establish seed dormancy in rice
OsDOR1	None	LOC_Os03g20770	seed	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.
OsDOR1	None	LOC_Os03g20770	seed	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Based on these findings, we suggest that OsDOR1 is a novel negative player of GA signaling operated in the maintenance of seed dormancy
OsDOR1	None	LOC_Os03g20770	R protein	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Here, we demonstrated that OsDOR1 protein binds to the GA receptor protein, OsGID1 in rice protoplasts, and interrupts with the formation OsGID1-OsSLR1 complex in yeast cells
OsDOR1	None	LOC_Os03g20770	ga	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.
OsDOR1	None	LOC_Os03g20770	ga	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Here, we demonstrated that OsDOR1 protein binds to the GA receptor protein, OsGID1 in rice protoplasts, and interrupts with the formation OsGID1-OsSLR1 complex in yeast cells
OsDOR1	None	LOC_Os03g20770	ga	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Co-expression of OsDOR1 with OsGID1 in rice protoplasts attenuated the GA-dependent degradation of OsSLR1, the key repressor of GA signaling
OsDOR1	None	LOC_Os03g20770	ga	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Based on these findings, we suggest that OsDOR1 is a novel negative player of GA signaling operated in the maintenance of seed dormancy
OsDOR1	None	LOC_Os03g20770	 ga 	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.
OsDOR1	None	LOC_Os03g20770	 ga 	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Here, we demonstrated that OsDOR1 protein binds to the GA receptor protein, OsGID1 in rice protoplasts, and interrupts with the formation OsGID1-OsSLR1 complex in yeast cells
OsDOR1	None	LOC_Os03g20770	 ga 	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Co-expression of OsDOR1 with OsGID1 in rice protoplasts attenuated the GA-dependent degradation of OsSLR1, the key repressor of GA signaling
OsDOR1	None	LOC_Os03g20770	 ga 	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Based on these findings, we suggest that OsDOR1 is a novel negative player of GA signaling operated in the maintenance of seed dormancy
OsDOR1	None	LOC_Os03g20770	GA	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.
OsDOR1	None	LOC_Os03g20770	GA	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Here, we demonstrated that OsDOR1 protein binds to the GA receptor protein, OsGID1 in rice protoplasts, and interrupts with the formation OsGID1-OsSLR1 complex in yeast cells
OsDOR1	None	LOC_Os03g20770	GA	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Co-expression of OsDOR1 with OsGID1 in rice protoplasts attenuated the GA-dependent degradation of OsSLR1, the key repressor of GA signaling
OsDOR1	None	LOC_Os03g20770	GA	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Based on these findings, we suggest that OsDOR1 is a novel negative player of GA signaling operated in the maintenance of seed dormancy
OsDOR1	None	LOC_Os03g20770	dormancy	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Based on these findings, we suggest that OsDOR1 is a novel negative player of GA signaling operated in the maintenance of seed dormancy
OsDOR1	None	LOC_Os03g20770	protoplasts	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Co-expression of OsDOR1 with OsGID1 in rice protoplasts attenuated the GA-dependent degradation of OsSLR1, the key repressor of GA signaling
OsDOR1	None	LOC_Os03g20770	seed dormancy	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.
OsDOR1	None	LOC_Os03g20770	seed dormancy	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	 Based on these findings, we suggest that OsDOR1 is a novel negative player of GA signaling operated in the maintenance of seed dormancy
OsDOS	Os01g0192000	LOC_Os01g09620	seed	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	Furthermore, methyl JA treatments of both seeds and detached leaves from the RNAi and the overexpressing transgenic lines showed hyper- and hyporesponses, respectively, consistent with the negative regulation of the JA pathway by OsDOS
OsDOS	Os01g0192000	LOC_Os01g09620	panicle	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	The expression of OsDOS was down-regulated during natural leaf senescence, panicle development, and pollination, although its transcripts were accumulated in various organs
OsDOS	Os01g0192000	LOC_Os01g09620	ja	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	Furthermore, methyl JA treatments of both seeds and detached leaves from the RNAi and the overexpressing transgenic lines showed hyper- and hyporesponses, respectively, consistent with the negative regulation of the JA pathway by OsDOS
OsDOS	Os01g0192000	LOC_Os01g09620	ja	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	Together, these results indicate that OsDOS is a novel nuclear protein that delays leaf senescence likely, at least in part, by integrating developmental cues to the JA pathway
OsDOS	Os01g0192000	LOC_Os01g09620	senescence	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	Here, we report a novel nuclear-localized CCCH-type zinc finger protein, Oryza sativa delay of the onset of senescence (OsDOS), involved in delaying leaf senescence in rice
OsDOS	Os01g0192000	LOC_Os01g09620	senescence	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	The expression of OsDOS was down-regulated during natural leaf senescence, panicle development, and pollination, although its transcripts were accumulated in various organs
OsDOS	Os01g0192000	LOC_Os01g09620	senescence	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	RNAi knockdown of OsDOS caused an accelerated age-dependent leaf senescence, whereas its overexpression produced a marked delay of leaf senescence, suggesting that it acts as a negative regulator for leaf senescence
OsDOS	Os01g0192000	LOC_Os01g09620	senescence	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	A genome-wide expression analysis further confirmed its negative regulation for leaf senescence and revealed that, in particular, the jasmonate (JA) pathway was found to be hyperactive in the OsDOS RNAi transgenic lines but impaired in the OsDOS overexpressing transgenic lines, indicating that this pathway is likely involved in the OsDOS-mediated delaying of leaf senescence
OsDOS	Os01g0192000	LOC_Os01g09620	senescence	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	Together, these results indicate that OsDOS is a novel nuclear protein that delays leaf senescence likely, at least in part, by integrating developmental cues to the JA pathway
OsDOS	Os01g0192000	LOC_Os01g09620	senescence	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice
OsDOS	Os01g0192000	LOC_Os01g09620	leaf	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	Here, we report a novel nuclear-localized CCCH-type zinc finger protein, Oryza sativa delay of the onset of senescence (OsDOS), involved in delaying leaf senescence in rice
OsDOS	Os01g0192000	LOC_Os01g09620	leaf	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	The expression of OsDOS was down-regulated during natural leaf senescence, panicle development, and pollination, although its transcripts were accumulated in various organs
OsDOS	Os01g0192000	LOC_Os01g09620	leaf	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	RNAi knockdown of OsDOS caused an accelerated age-dependent leaf senescence, whereas its overexpression produced a marked delay of leaf senescence, suggesting that it acts as a negative regulator for leaf senescence
OsDOS	Os01g0192000	LOC_Os01g09620	leaf	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	A genome-wide expression analysis further confirmed its negative regulation for leaf senescence and revealed that, in particular, the jasmonate (JA) pathway was found to be hyperactive in the OsDOS RNAi transgenic lines but impaired in the OsDOS overexpressing transgenic lines, indicating that this pathway is likely involved in the OsDOS-mediated delaying of leaf senescence
OsDOS	Os01g0192000	LOC_Os01g09620	leaf	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	Together, these results indicate that OsDOS is a novel nuclear protein that delays leaf senescence likely, at least in part, by integrating developmental cues to the JA pathway
OsDOS	Os01g0192000	LOC_Os01g09620	leaf	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice
OsDOS	Os01g0192000	LOC_Os01g09620	jasmonate	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice	A genome-wide expression analysis further confirmed its negative regulation for leaf senescence and revealed that, in particular, the jasmonate (JA) pathway was found to be hyperactive in the OsDOS RNAi transgenic lines but impaired in the OsDOS overexpressing transgenic lines, indicating that this pathway is likely involved in the OsDOS-mediated delaying of leaf senescence
OsDPE2	Os07g0662900	LOC_Os07g46790	temperature	Expression and Characterization of Rice Disproportionating Enzymes	 The optimum reaction temperature was 30°C for OsDPE1 and 39°C for OsDPE2
OsDPE2	Os07g0662900	LOC_Os07g46790	pollen germination	Cytosolic DISPROPORTIONATING ENZYME2 is essential for pollen germination and pollen tube elongation in rice	Cytosolic DISPROPORTIONATING ENZYME2 is essential for pollen germination and pollen tube elongation in rice
OsDPE2	Os07g0662900	LOC_Os07g46790	pollen tube elongation	Cytosolic DISPROPORTIONATING ENZYME2 is essential for pollen germination and pollen tube elongation in rice	Cytosolic DISPROPORTIONATING ENZYME2 is essential for pollen germination and pollen tube elongation in rice
OsDPE2	Os07g0662900	LOC_Os07g46790	development	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 In this study, OsDPE2 affected the vegetative plant development of rice via DPE2 enzyme
OsDPE2	Os07g0662900	LOC_Os07g46790	development	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 Additionally, OsDPE2 regulated the reproductive plant development of rice by modulating starch content in young panicles
OsDPE2	Os07g0662900	LOC_Os07g46790	development	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 In summary, OsDPE2 can regulate vegetative and reproductive plant development of rice by modulating starch content
OsDPE2	Os07g0662900	LOC_Os07g46790	plant development	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 In this study, OsDPE2 affected the vegetative plant development of rice via DPE2 enzyme
OsDPE2	Os07g0662900	LOC_Os07g46790	plant development	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 Additionally, OsDPE2 regulated the reproductive plant development of rice by modulating starch content in young panicles
OsDPE2	Os07g0662900	LOC_Os07g46790	plant development	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 In summary, OsDPE2 can regulate vegetative and reproductive plant development of rice by modulating starch content
OsDPE2	Os07g0662900	LOC_Os07g46790	panicle	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.
OsDPE2	Os07g0662900	LOC_Os07g46790	panicle	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 Furthermore, DPE2 activities of OsDPE2 haplotypes are associated with the panicle yield of rice
OsDPE2	Os07g0662900	LOC_Os07g46790	starch	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 Additionally, OsDPE2 regulated the reproductive plant development of rice by modulating starch content in young panicles
OsDPE2	Os07g0662900	LOC_Os07g46790	starch	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 In summary, OsDPE2 can regulate vegetative and reproductive plant development of rice by modulating starch content
OsDPE2	Os07g0662900	LOC_Os07g46790	yield	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 Furthermore, DPE2 activities of OsDPE2 haplotypes are associated with the panicle yield of rice
OsDPE2	Os07g0662900	LOC_Os07g46790	vegetative	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 In this study, OsDPE2 affected the vegetative plant development of rice via DPE2 enzyme
OsDPE2	Os07g0662900	LOC_Os07g46790	vegetative	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 In summary, OsDPE2 can regulate vegetative and reproductive plant development of rice by modulating starch content
OsDPE2	Os07g0662900	LOC_Os07g46790	cytoplasm	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 OsDPE2 encodes rice DPE2 located in the cytoplasm
OsDPE2	Os07g0662900	LOC_Os07g46790	reproductive	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 Additionally, OsDPE2 regulated the reproductive plant development of rice by modulating starch content in young panicles
OsDPE2	Os07g0662900	LOC_Os07g46790	reproductive	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 In summary, OsDPE2 can regulate vegetative and reproductive plant development of rice by modulating starch content
OsDPE2	Os07g0662900	LOC_Os07g46790	young panicles	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	 Additionally, OsDPE2 regulated the reproductive plant development of rice by modulating starch content in young panicles
OsDR10	Os08g0155900	LOC_Os08g05960	defense response	A rice gene of de novo origin negatively regulates pathogen-induced defense response.	A rice gene of de novo origin negatively regulates pathogen-induced defense response.
OsDR10	Os08g0155900	LOC_Os08g05960	bacterial blight disease	A rice gene of de novo origin negatively regulates pathogen-induced defense response.	Biologic analyses including gene silencing, pathologic analysis, and mutant characterization by transformation showed that the OsDR10-suppressed plants enhanced resistance to a broad spectrum of Xanthomonas oryzae pv. oryzae strains, which cause bacterial blight disease.
OsDR10	Os08g0155900	LOC_Os08g05960	bacterial blight	A rice gene of de novo origin negatively regulates pathogen-induced defense response.	Biologic analyses including gene silencing, pathologic analysis, and mutant characterization by transformation showed that the OsDR10-suppressed plants enhanced resistance to a broad spectrum of Xanthomonas oryzae pv. oryzae strains, which cause bacterial blight disease.
OsDR10	Os08g0155900	LOC_Os08g05960	bacterial blight	A rice gene of de novo origin negatively regulates pathogen-induced defense response.	Suppression of OsDR10 enhances resistance to bacterial blight
OsDR10	Os08g0155900	LOC_Os08g05960	disease resistance	A rice gene of de novo origin negatively regulates pathogen-induced defense response.	OsDR10-suppressed plants showed enhanced disease resistance not only at the adult stage but also at the seedling stage.
OsDR11	Os12g0460800	LOC_Os12g27520	kinase	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance.	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance.
OsDR11	Os12g0460800	LOC_Os12g27520	disease resistance	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance.	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance.
OsDR11	Os12g0460800	LOC_Os12g27520	disease	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance.	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance.
OsDR11	Os12g0460800	LOC_Os12g27520	bacterial disease	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance.	Here, we report that two alternatively spliced transcripts of the rice (Oryza sativa) LAMMER kinase gene OsDR11, long OsDR11L and short OsDR11S, play opposite roles in rice resistance against Xanthomonas oryzae pv oryzae (Xoo), which causes the most damaging bacterial disease in rice worldwide.
OsDR11	Os12g0460800	LOC_Os12g27520	disease resistance	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance.	These results suggest that OsDR11L is a negative regulator in rice disease resistance, which may be associated with suppression of JA signaling.
OsDR11	Os12g0460800	LOC_Os12g27520	JA signaling	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance.	These results suggest that OsDR11L is a negative regulator in rice disease resistance, which may be associated with suppression of JA signaling.
OsDR8	Os07g0529600	LOC_Os07g34570	defense	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation	Exogenous application of thiamine could complement the compromised defense of the OsDR8-silenced plants
OsDR8	Os07g0529600	LOC_Os07g34570	defense	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation	The expression level of several defense-responsive genes including the earlier functional genes of defense transduction pathway, OsPOX and OsPAL, and the downstream genes of the pathway, OsPR1a, OsPR1b, OsPR4, OsPR5 and OsPR10, was also decreased in the OsDR8-silenced plants
OsDR8	Os07g0529600	LOC_Os07g34570	defense	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation	These results suggest that the impact of OsDR8 on disease resistance in rice may be through the regulation of expression of other defense-responsive genes and the site of OsDR8 function is on the upstream of the signal transduction pathway
OsDR8	Os07g0529600	LOC_Os07g34570	disease resistance	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation	The function of OsDR8, a rice disease resistance-responsive gene, was studied
OsDR8	Os07g0529600	LOC_Os07g34570	disease resistance	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation	These results suggest that the impact of OsDR8 on disease resistance in rice may be through the regulation of expression of other defense-responsive genes and the site of OsDR8 function is on the upstream of the signal transduction pathway
OsDR8	Os07g0529600	LOC_Os07g34570	disease resistance	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation
OsDR8	Os07g0529600	LOC_Os07g34570	disease	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation	The function of OsDR8, a rice disease resistance-responsive gene, was studied
OsDR8	Os07g0529600	LOC_Os07g34570	disease	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation	These results suggest that the impact of OsDR8 on disease resistance in rice may be through the regulation of expression of other defense-responsive genes and the site of OsDR8 function is on the upstream of the signal transduction pathway
OsDR8	Os07g0529600	LOC_Os07g34570	disease	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation
OsDRB1	Os11g0119900	LOC_Os11g02720	sRNA biogenesis	Genome-wide profiling of rice DOUBLE-STRANDED RNA BINDING PROTEIN 1-associated RNAs by targeted RNA editing	Small RNA sequencing also identified 191 A-to-I RNA edits in miRNAs and other sRNAs, confirming that OsDRB1 is involved in sRNA biogenesis or function.
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	leaf	DRB2 Modulates Leaf Rolling by Regulating Accumulation of MicroRNAs Related to Leaf Development in Rice.	 qRT-PCR analysis of 29 related genes suggested that defects of the OsDRB2-miR166-OsHBs pathway could play an important role in formation of the rolled leaf phenotype of rl89, in which OsDRB2 mutation reduced miR166 accumulation, resulting in elevated expressions of the class III homeodomain-leucine zipper genes (such as OsHB1, 3 and 5) involved in leaf polarity and/or morphology development
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	leaf	DRB2 Modulates Leaf Rolling by Regulating Accumulation of MicroRNAs Related to Leaf Development in Rice.	 Moreover, OsDRB2 mutation also reduced accumulation of miR160, miR319, miR390, and miR396, which could cause the abnormal leaf development in rl89 by regulating expressions of their target genes related to leaf development
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	development	DRB2 Modulates Leaf Rolling by Regulating Accumulation of MicroRNAs Related to Leaf Development in Rice.	 qRT-PCR analysis of 29 related genes suggested that defects of the OsDRB2-miR166-OsHBs pathway could play an important role in formation of the rolled leaf phenotype of rl89, in which OsDRB2 mutation reduced miR166 accumulation, resulting in elevated expressions of the class III homeodomain-leucine zipper genes (such as OsHB1, 3 and 5) involved in leaf polarity and/or morphology development
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	development	DRB2 Modulates Leaf Rolling by Regulating Accumulation of MicroRNAs Related to Leaf Development in Rice.	 Moreover, OsDRB2 mutation also reduced accumulation of miR160, miR319, miR390, and miR396, which could cause the abnormal leaf development in rl89 by regulating expressions of their target genes related to leaf development
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	leaf development	DRB2 Modulates Leaf Rolling by Regulating Accumulation of MicroRNAs Related to Leaf Development in Rice.	 Moreover, OsDRB2 mutation also reduced accumulation of miR160, miR319, miR390, and miR396, which could cause the abnormal leaf development in rl89 by regulating expressions of their target genes related to leaf development
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	leaf	SEMI-ROLLED LEAF 10 stabilizes catalase isozyme B to regulate leaf morphology and thermotolerance in rice (Oryza sativa L.).	 The srl10 mutant had a semi-rolled leaf phenotype and elevated sensitivity to high temperature
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	temperature	SEMI-ROLLED LEAF 10 stabilizes catalase isozyme B to regulate leaf morphology and thermotolerance in rice (Oryza sativa L.).	 The srl10 mutant had a semi-rolled leaf phenotype and elevated sensitivity to high temperature
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	temperature	SEMI-ROLLED LEAF 10 stabilizes catalase isozyme B to regulate leaf morphology and thermotolerance in rice (Oryza sativa L.).	 The natural Hap3 (AGC) type of SRL10 allele was found to be present in the majority of aus rice accessions, and was identified as a thermotolerant allele under high temperature stress in both the field and the growth chamber
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	growth	SEMI-ROLLED LEAF 10 stabilizes catalase isozyme B to regulate leaf morphology and thermotolerance in rice (Oryza sativa L.).	 The natural Hap3 (AGC) type of SRL10 allele was found to be present in the majority of aus rice accessions, and was identified as a thermotolerant allele under high temperature stress in both the field and the growth chamber
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	stress	SEMI-ROLLED LEAF 10 stabilizes catalase isozyme B to regulate leaf morphology and thermotolerance in rice (Oryza sativa L.).	 The natural Hap3 (AGC) type of SRL10 allele was found to be present in the majority of aus rice accessions, and was identified as a thermotolerant allele under high temperature stress in both the field and the growth chamber
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	catalase	SEMI-ROLLED LEAF 10 stabilizes catalase isozyme B to regulate leaf morphology and thermotolerance in rice (Oryza sativa L.).	 SRL10 directly interacted with catalase isozyme B (CATB), and the two proteins mutually increased one other&#x27;s stability to enhance hydrogen peroxide (H(2) O(2) ) scavenging, thereby contributing to thermotolerance
OsDRB2|SRL10	Os10g0480500	LOC_Os10g33970	thermotolerance	SEMI-ROLLED LEAF 10 stabilizes catalase isozyme B to regulate leaf morphology and thermotolerance in rice (Oryza sativa L.).	 SRL10 directly interacted with catalase isozyme B (CATB), and the two proteins mutually increased one other&#x27;s stability to enhance hydrogen peroxide (H(2) O(2) ) scavenging, thereby contributing to thermotolerance
OsDRE2	Os04g0674400	LOC_Os04g57810	immune response	OsDRE2 contributes to chitin-triggered response through its interaction with OsRLCK185.	Thus, it is likely that OsDRE2 regulates OsRLCK185-mediated immune responses
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	salt	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	Expression of OsDREB1A and OsDREB1B was induced by cold, whereas expression of OsDREB2A was induced by dehydration and high-salt stresses
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	salt	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	Over-expression of OsDREB1A in transgenic Arabidopsis induced over-expression of target stress-inducible genes of Arabidopsis DREB1A resulting in plants with higher tolerance to drought, high-salt, and freezing stresses
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	salt	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	OsDREB1A is potentially useful for producing transgenic monocots that are tolerant to drought, high-salt, and/or cold stresses
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	temperature	An AP2/EREBP-type transcription-factor gene from rice is cold-inducible and encodes a nuclear-localized protein	Northern analysis showed that the transcripts of OsDREBL accumulated rapidly (within 30 min) in response to low temperature, but not in response to ABA, NaCl and dehydration treatments
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	drought	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	Comparative time-course expression analysis indicated that ENAC1 expression, similar with OsDREB1A, was induced very quickly by various abiotic stresses including salt, drought, cold, and exogenous abscisic acid
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	drought	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	Over-expression of OsDREB1A in transgenic Arabidopsis induced over-expression of target stress-inducible genes of Arabidopsis DREB1A resulting in plants with higher tolerance to drought, high-salt, and freezing stresses
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	drought	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	OsDREB1A is potentially useful for producing transgenic monocots that are tolerant to drought, high-salt, and/or cold stresses
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	salt	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	Comparative time-course expression analysis indicated that ENAC1 expression, similar with OsDREB1A, was induced very quickly by various abiotic stresses including salt, drought, cold, and exogenous abscisic acid
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	transcription factor	An AP2/EREBP-type transcription-factor gene from rice is cold-inducible and encodes a nuclear-localized protein	These results suggested that OsDREBL may function as a transcription factor in the cold-stress response, independent of the DREB signal-transduction pathway
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	abiotic stress	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	Comparative time-course expression analysis indicated that ENAC1 expression, similar with OsDREB1A, was induced very quickly by various abiotic stresses including salt, drought, cold, and exogenous abscisic acid
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	abiotic stress	ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.)	However, the induction of ENAC1 by abiotic stress was transient and lasted up to 3 h, whereas that of OsDREB1A maintained longer
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	cold stress	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	OsDREB1A is potentially useful for producing transgenic monocots that are tolerant to drought, high-salt, and/or cold stresses
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	salt stress	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	Expression of OsDREB1A and OsDREB1B was induced by cold, whereas expression of OsDREB2A was induced by dehydration and high-salt stresses
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	drought	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	temperature	Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.	In order to understand whether natural genetic variation in these two loci leads to cold tolerance or susceptibility, OsDREB1A and OsDREB1B were targeted across several rice genotypes showing differential response to low temperature
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	tolerance	Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.	In order to understand whether natural genetic variation in these two loci leads to cold tolerance or susceptibility, OsDREB1A and OsDREB1B were targeted across several rice genotypes showing differential response to low temperature
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	cold tolerance	Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.	In order to understand whether natural genetic variation in these two loci leads to cold tolerance or susceptibility, OsDREB1A and OsDREB1B were targeted across several rice genotypes showing differential response to low temperature
OsDREB1A|OsDREBL|OsCBF3	Os09g0522200	LOC_Os09g35030	transcription factor	Transcriptional Activation and Phosphorylation of OsCNGC9 Confer Enhanced Chilling Tolerance in Rice	In addition, transcription of OsCNGC9 is activated by a rice dehydration responsive element binding transcription factor, OsDREB1A
OsDREB1B	Os09g0522000	LOC_Os09g35010	salicylic acid	Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance	The OsDREB1B gene was differentially regulated at the transcriptional level by osmotic stress, oxidative stress, salicylic acid, ABA, and cold
OsDREB1B	Os09g0522000	LOC_Os09g35010	salicylic acid	Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance	Histochemical analysis of GUS expression in T(2) transgenic Arabidopsis plants indicated that OsDREB1B shows stress-specific induction pattern in response to a variety of stresses like mannitol, NaCl, PEG, methyl viologen, cold, ABA, and salicylic acid
OsDREB1B	Os09g0522000	LOC_Os09g35010	transcription factor	Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B	Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B
OsDREB1B	Os09g0522000	LOC_Os09g35010	salt	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	Expression of OsDREB1A and OsDREB1B was induced by cold, whereas expression of OsDREB2A was induced by dehydration and high-salt stresses
OsDREB1B	Os09g0522000	LOC_Os09g35010	temperature	Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B	However, here it is shown that OsDREB1B is not only induced by low temperatures, but also by drought and mechanical stress
OsDREB1B	Os09g0522000	LOC_Os09g35010	drought	Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B	However, here it is shown that OsDREB1B is not only induced by low temperatures, but also by drought and mechanical stress
OsDREB1B	Os09g0522000	LOC_Os09g35010	biotic stress	Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance	The data obtained provide strong in vivo evidence that OsDREB1B is involved in both abiotic and biotic stress responses, and confers broad-spectrum stress tolerance to transgenic plants
OsDREB1B	Os09g0522000	LOC_Os09g35010	salt stress	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	Expression of OsDREB1A and OsDREB1B was induced by cold, whereas expression of OsDREB2A was induced by dehydration and high-salt stresses
OsDREB1B	Os09g0522000	LOC_Os09g35010	transcription factor	Isolation, optimization, and functional analysis of the cDNA encoding transcription factor OsDREB1B in Oryza Sativa L	Isolation, optimization, and functional analysis of the cDNA encoding transcription factor OsDREB1B in Oryza Sativa L
OsDREB1B	Os09g0522000	LOC_Os09g35010	temperature	Isolation, optimization, and functional analysis of the cDNA encoding transcription factor OsDREB1B in Oryza Sativa L	Results indicated that the OsDREB1BI gene was over-expressed in transgenic plants under cold and high-temperature, meanwhile, those transgenic plants also revealed freezing and heat tolerance
OsDREB1B	Os09g0522000	LOC_Os09g35010	oxidative	Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance	The OsDREB1B gene was differentially regulated at the transcriptional level by osmotic stress, oxidative stress, salicylic acid, ABA, and cold
OsDREB1B	Os09g0522000	LOC_Os09g35010	oxidative	Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance	Overexpression of OsDREB1B in tobacco also improved the oxidative and freezing stress tolerance of transgenic plants
OsDREB1B	Os09g0522000	LOC_Os09g35010	stress	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Under salt stress treatment, the expression levels of OsbZIP05, OsHKT1;1 and OsDREB1B were significantly lower yet the level of OsHKT2;1 was significantly higher in oswrky28 mutants than those in wide type plants
OsDREB1B	Os09g0522000	LOC_Os09g35010	seedling	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	OsWRKY28 confers salinity tolerance by directly binding to OsDREB1B promoter and increasing its transcriptional activity, and negatively regulates abscisic acid mediated seedling establishment in rice
OsDREB1B	Os09g0522000	LOC_Os09g35010	salinity	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.
OsDREB1B	Os09g0522000	LOC_Os09g35010	salinity	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	OsWRKY28 confers salinity tolerance by directly binding to OsDREB1B promoter and increasing its transcriptional activity, and negatively regulates abscisic acid mediated seedling establishment in rice
OsDREB1B	Os09g0522000	LOC_Os09g35010	salinity	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Our data of yeast one-hybrid assay and dual-luciferase assay supported that OsWRKY28 could directly bind to the promoter of OsDREB1B to enhance salinity tolerance in rice
OsDREB1B	Os09g0522000	LOC_Os09g35010	salinity	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Together, OsWRKY28 confers salinity tolerance through directly targeting OsDREB1B promoter and further activating its transcription in rice
OsDREB1B	Os09g0522000	LOC_Os09g35010	salt	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Under salt stress treatment, the expression levels of OsbZIP05, OsHKT1;1 and OsDREB1B were significantly lower yet the level of OsHKT2;1 was significantly higher in oswrky28 mutants than those in wide type plants
OsDREB1B	Os09g0522000	LOC_Os09g35010	tolerance	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.
OsDREB1B	Os09g0522000	LOC_Os09g35010	tolerance	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	OsWRKY28 confers salinity tolerance by directly binding to OsDREB1B promoter and increasing its transcriptional activity, and negatively regulates abscisic acid mediated seedling establishment in rice
OsDREB1B	Os09g0522000	LOC_Os09g35010	tolerance	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Our data of yeast one-hybrid assay and dual-luciferase assay supported that OsWRKY28 could directly bind to the promoter of OsDREB1B to enhance salinity tolerance in rice
OsDREB1B	Os09g0522000	LOC_Os09g35010	tolerance	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Together, OsWRKY28 confers salinity tolerance through directly targeting OsDREB1B promoter and further activating its transcription in rice
OsDREB1B	Os09g0522000	LOC_Os09g35010	salt stress	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Under salt stress treatment, the expression levels of OsbZIP05, OsHKT1;1 and OsDREB1B were significantly lower yet the level of OsHKT2;1 was significantly higher in oswrky28 mutants than those in wide type plants
OsDREB1B	Os09g0522000	LOC_Os09g35010	abscisic acid	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	OsWRKY28 confers salinity tolerance by directly binding to OsDREB1B promoter and increasing its transcriptional activity, and negatively regulates abscisic acid mediated seedling establishment in rice
OsDREB1C	Os06g0127100	LOC_Os06g03670	nitrogen	A transcriptional regulator that boosts grain yields and shortens the growth duration of rice.	 We show that OsDREB1C drives functionally diverse transcriptional programs determining photosynthetic capacity, nitrogen utilization, and flowering time
OsDREB1C	Os06g0127100	LOC_Os06g03670	nitrogen utilization	A transcriptional regulator that boosts grain yields and shortens the growth duration of rice.	 We show that OsDREB1C drives functionally diverse transcriptional programs determining photosynthetic capacity, nitrogen utilization, and flowering time
OsDREB1C	Os06g0127100	LOC_Os06g03670	flowering time	A transcriptional regulator that boosts grain yields and shortens the growth duration of rice.	 We show that OsDREB1C drives functionally diverse transcriptional programs determining photosynthetic capacity, nitrogen utilization, and flowering time
OsDREB1C	Os06g0127100	LOC_Os06g03670	flowering	A transcriptional regulator that boosts grain yields and shortens the growth duration of rice.	 We show that OsDREB1C drives functionally diverse transcriptional programs determining photosynthetic capacity, nitrogen utilization, and flowering time
OsDREB1C	Os06g0127100	LOC_Os06g03670	N utilization	A transcriptional regulator that boosts grain yields and shortens the growth duration of rice.	 We show that OsDREB1C drives functionally diverse transcriptional programs determining photosynthetic capacity, nitrogen utilization, and flowering time
OsDREB1D	Os06g0165600	LOC_Os06g06970	salt	Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis	Results indicated that the over-expression of OsDREB1D conferred cold and high-salt tolerance in transgenic plants, and that transgenic plants were also insensitive to ABA (abscisic acid)
OsDREB1D	Os06g0165600	LOC_Os06g06970	salt	Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis	Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis
OsDREB1D	Os06g0165600	LOC_Os06g06970	ABA	Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis	Results indicated that the over-expression of OsDREB1D conferred cold and high-salt tolerance in transgenic plants, and that transgenic plants were also insensitive to ABA (abscisic acid)
OsDREB1D	Os06g0165600	LOC_Os06g06970	salt tolerance	Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis	Results indicated that the over-expression of OsDREB1D conferred cold and high-salt tolerance in transgenic plants, and that transgenic plants were also insensitive to ABA (abscisic acid)
OsDREB1D	Os06g0165600	LOC_Os06g06970	salt tolerance	Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis	Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis
OsDREB1D	Os06g0165600	LOC_Os06g06970	drought	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D	Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D
OsDREB1D	Os06g0165600	LOC_Os06g06970	transcription factor	Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis	From these data, we deduced that this OsDREB1D gene functions similarly as other DREB transcription factors
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	temperature	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Transgenic plants harbouring OsDREB1F gene led to enhanced tolerance to salt, drought, and low temperature in both rice and Arabidopsis
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	temperature	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	transcription factor	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Here, a novel rice DREB transcription factor, OsDREB1F, was cloned and characterised via subtractive suppression hybridisation (SSH) from upland rice
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	salinity	Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L	The semi-quantitative RT-PCR (s-Q RT-PCR) analysis indicated the expression of RCBF2 gene was induced by cold, dehydration and high-salinity, but not by abscisic acid, and the transcription of RCBF2 gene accumulated primarily in rice immature seeds, growing point and shoots
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	drought	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Expression analysis revealed that OsDREB1F gene was induced by salt, drought, cold stresses, and also ABA application, but not by pathogen, wound, and H2O2
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	drought	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Transgenic plants harbouring OsDREB1F gene led to enhanced tolerance to salt, drought, and low temperature in both rice and Arabidopsis
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	drought	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	cold stress	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Expression analysis revealed that OsDREB1F gene was induced by salt, drought, cold stresses, and also ABA application, but not by pathogen, wound, and H2O2
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	shoot	Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L	The semi-quantitative RT-PCR (s-Q RT-PCR) analysis indicated the expression of RCBF2 gene was induced by cold, dehydration and high-salinity, but not by abscisic acid, and the transcription of RCBF2 gene accumulated primarily in rice immature seeds, growing point and shoots
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	ethylene	Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L	Analysis of the deduced RCBF2 amino acid sequence revealed that RCBF2 contained a conserved ethylene-responsive element binding protein (EREBP)/AP2 domain of 59 amino acids and a potential nuclear localization sequence
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	ethylene	Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L	Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	transcription factor	Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L	A transcription factor RCBF2 which interacts with C-repeat/DRE was isolated from Oryza sativa L
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	ABA	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Expression analysis revealed that OsDREB1F gene was induced by salt, drought, cold stresses, and also ABA application, but not by pathogen, wound, and H2O2
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	seed	Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L	The semi-quantitative RT-PCR (s-Q RT-PCR) analysis indicated the expression of RCBF2 gene was induced by cold, dehydration and high-salinity, but not by abscisic acid, and the transcription of RCBF2 gene accumulated primarily in rice immature seeds, growing point and shoots
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	salt	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Expression analysis revealed that OsDREB1F gene was induced by salt, drought, cold stresses, and also ABA application, but not by pathogen, wound, and H2O2
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	salt	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Transgenic plants harbouring OsDREB1F gene led to enhanced tolerance to salt, drought, and low temperature in both rice and Arabidopsis
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	salt	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	drought	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	drought	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	Three coding SNPs and one haplotype identified in the OsDREB1F gene have potential to be associated with drought tolerance in rice
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	drought	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	One OsDREB1F variant in the activation domain of OsDREB1F gene which led to conversion of aspartate amino acid to glutamate was found to be associated with drought tolerance
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	drought tolerance	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	drought tolerance	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	Three coding SNPs and one haplotype identified in the OsDREB1F gene have potential to be associated with drought tolerance in rice
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	drought tolerance	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	One OsDREB1F variant in the activation domain of OsDREB1F gene which led to conversion of aspartate amino acid to glutamate was found to be associated with drought tolerance
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	tolerance	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	Three coding SNPs and one haplotype identified in the OsDREB1F gene have potential to be associated with drought tolerance in rice
OsDREB1F|RCBF2	Os01g0968800	LOC_Os01g73770	tolerance	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	One OsDREB1F variant in the activation domain of OsDREB1F gene which led to conversion of aspartate amino acid to glutamate was found to be associated with drought tolerance
OsDREB1G	Os02g0677300	LOC_Os02g45450	transcription factor	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	Therefore, OsDREB1G is a typical CBF/DREB1 transcription factor that specifically functions in the cold stress response
OsDREB1G	Os02g0677300	LOC_Os02g45450	drought	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	However, unlike these rice lines, transgenic rice overexpressing OsDREB1G did not exhibit significant increases in drought or salt tolerance
OsDREB1G	Os02g0677300	LOC_Os02g45450	salt	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	However, unlike these rice lines, transgenic rice overexpressing OsDREB1G did not exhibit significant increases in drought or salt tolerance
OsDREB1G	Os02g0677300	LOC_Os02g45450	tolerance	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	However, unlike these rice lines, transgenic rice overexpressing OsDREB1G did not exhibit significant increases in drought or salt tolerance
OsDREB1G	Os02g0677300	LOC_Os02g45450	tolerance	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	Therefore, OsDREB1G could be useful for developing transgenic rice with enhanced cold-stress tolerance
OsDREB1G	Os02g0677300	LOC_Os02g45450	cold stress	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	OsDREB1G is specifically induced under cold stress conditions among several abiotic stresses examined
OsDREB1G	Os02g0677300	LOC_Os02g45450	cold stress	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	Therefore, OsDREB1G is a typical CBF/DREB1 transcription factor that specifically functions in the cold stress response
OsDREB1G	Os02g0677300	LOC_Os02g45450	abiotic stress	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	OsDREB1G is specifically induced under cold stress conditions among several abiotic stresses examined
OsDREB1G	Os02g0677300	LOC_Os02g45450	salt tolerance	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	However, unlike these rice lines, transgenic rice overexpressing OsDREB1G did not exhibit significant increases in drought or salt tolerance
OsDREB1G	Os02g0677300	LOC_Os02g45450	stress	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	OsDREB1G is specifically induced under cold stress conditions among several abiotic stresses examined
OsDREB1G	Os02g0677300	LOC_Os02g45450	stress	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	Therefore, OsDREB1G is a typical CBF/DREB1 transcription factor that specifically functions in the cold stress response
OsDREB1G	Os02g0677300	LOC_Os02g45450	biotic stress	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	OsDREB1G is specifically induced under cold stress conditions among several abiotic stresses examined
OsDREB1G	Os02g0677300	LOC_Os02g45450	stress tolerance	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	Therefore, OsDREB1G could be useful for developing transgenic rice with enhanced cold-stress tolerance
OsDREB1G	Os02g0677300	LOC_Os02g45450	stress response	Ectopic Expression of OsDREB1G, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	Therefore, OsDREB1G is a typical CBF/DREB1 transcription factor that specifically functions in the cold stress response
OsDREB2A	Os01g0165000	LOC_Os01g07120	growth	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)	We developed 30 transgenic T(0) rice plants overexpressing OsDREB2A which were devoid of any growth penalty or phenotypic abnormalities during stressed or non-stressed conditions
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice	T(2) and T(3) transgenic lines over-expressing OsDREB2A were found to have improved survival rates under severe drought and salt stress conditions relative to non-transgenic rice plants or rice plants transformed with the empty vector control
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)
OsDREB2A	Os01g0165000	LOC_Os01g07120	drought	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice	T(2) and T(3) transgenic lines over-expressing OsDREB2A were found to have improved survival rates under severe drought and salt stress conditions relative to non-transgenic rice plants or rice plants transformed with the empty vector control
OsDREB2A	Os01g0165000	LOC_Os01g07120	drought	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice	OsDREB2A expression was found to be markedly induced by drought and ABA treatment
OsDREB2A	Os01g0165000	LOC_Os01g07120	drought	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt stress	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)
OsDREB2A	Os01g0165000	LOC_Os01g07120	transcription factor	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	Expression of OsDREB1A and OsDREB1B was induced by cold, whereas expression of OsDREB2A was induced by dehydration and high-salt stresses
OsDREB2A	Os01g0165000	LOC_Os01g07120	abiotic stress	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice	In this study, the rice OsDREB2A gene was isolated and expressed under the control of a stress-inducible promoter (4ABRC) to improve the abiotic stress tolerance of japonica rice variety TNG67
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	OsDREB2A expression is induced by drought, low-temperature and salt stresses
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	Here, we report the ability of OsDREB2A to regulate high-salt response in transgenic soybean
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	Overexpressing OsDREB2A in soybeans enhanced salt tolerance by accumulating osmolytes, such as soluble sugars and free proline, and improving the expression levels of some stress-responsive transcription factors and key genes
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	Overexpression of OsDREB2A in soybean might be used to improve tolerance to salt stress
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt stress	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	OsDREB2A expression is induced by drought, low-temperature and salt stresses
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt stress	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	Overexpression of OsDREB2A in soybean might be used to improve tolerance to salt stress
OsDREB2A	Os01g0165000	LOC_Os01g07120	transcription factor	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt tolerance	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	Overexpressing OsDREB2A in soybeans enhanced salt tolerance by accumulating osmolytes, such as soluble sugars and free proline, and improving the expression levels of some stress-responsive transcription factors and key genes
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt tolerance	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt stress	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsDREB2A	Os01g0165000	LOC_Os01g07120	drought	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	OsDREB2A expression is induced by drought, low-temperature and salt stresses
OsDREB2A	Os01g0165000	LOC_Os01g07120	transcription factor	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	OsDREB2A, a member of the DREBP subfamily of AP2/ERF transcription factors in rice (Oryza sativa), is involved in the abiotic stress response
OsDREB2A	Os01g0165000	LOC_Os01g07120	transcription factor	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	Overexpressing OsDREB2A in soybeans enhanced salt tolerance by accumulating osmolytes, such as soluble sugars and free proline, and improving the expression levels of some stress-responsive transcription factors and key genes
OsDREB2A	Os01g0165000	LOC_Os01g07120	transcription factor	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt stress	OsDREB genes in rice,Oryza sativaL., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression	Expression of OsDREB1A and OsDREB1B was induced by cold, whereas expression of OsDREB2A was induced by dehydration and high-salt stresses
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsDREB2A	Os01g0165000	LOC_Os01g07120	drought tolerance	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice
OsDREB2A	Os01g0165000	LOC_Os01g07120	salt stress	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice	T(2) and T(3) transgenic lines over-expressing OsDREB2A were found to have improved survival rates under severe drought and salt stress conditions relative to non-transgenic rice plants or rice plants transformed with the empty vector control
OsDREB2A	Os01g0165000	LOC_Os01g07120	temperature	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	OsDREB2A expression is induced by drought, low-temperature and salt stresses
OsDREB2A	Os01g0165000	LOC_Os01g07120	oxidative	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsDREB2A	Os01g0165000	LOC_Os01g07120	ABA	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice	OsDREB2A expression was found to be markedly induced by drought and ABA treatment
OsDREB2A	Os01g0165000	LOC_Os01g07120	abiotic stress	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	OsDREB2A, a member of the DREBP subfamily of AP2/ERF transcription factors in rice (Oryza sativa), is involved in the abiotic stress response
OsDREB2A	Os01g0165000	LOC_Os01g07120	abiotic stress	OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean	These results indicate that OsDREB2A may participate in abiotic stress by directly binding with DRE element to regulate the expression of downstream genes
OsDREB2B	Os05g0346200	LOC_Os05g27930	drought	Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes	Transgenic Arabidopsis plants overexpressing OsDREB2B showed enhanced expression of DREB2A target genes and improved drought and heat-shock stress tolerance
OsDREB2B	Os05g0346200	LOC_Os05g27930	transcription factor	Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes	These results suggest that OsDREB2B is a key gene that encodes a stress-inducible DREB2-type transcription factor that functions in stress-responsive gene expression in rice
OsDREB2B	Os05g0346200	LOC_Os05g27930	abiotic stress	Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes	Only OsDREB2A and OsDREB2B showed abiotic stress-inducible gene expression
OsDREB2B	Os05g0346200	LOC_Os05g27930	leaf	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 Spatial expression analysis revealed that OsDREB2B was highly expressed in the leaf sheaths
OsDREB2B	Os05g0346200	LOC_Os05g27930	leaf	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 Under exogenous GA(3) application, OsDREB2B expression was induced, and the length of the second leaf sheath of the OsDREB2B-OE lines recovered to that of the WT
OsDREB2B	Os05g0346200	LOC_Os05g27930	growth	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsDREB2B	Os05g0346200	LOC_Os05g27930	development	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsDREB2B	Os05g0346200	LOC_Os05g27930	sheath	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 Under exogenous GA(3) application, OsDREB2B expression was induced, and the length of the second leaf sheath of the OsDREB2B-OE lines recovered to that of the WT
OsDREB2B	Os05g0346200	LOC_Os05g27930	nucleus	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 OsDREB2B localized to the nucleus of the rice protoplast acted as a transcription activator and upregulated OsAP2-39 by directly binding to its promoter
OsDREB2B	Os05g0346200	LOC_Os05g27930	ga	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsDREB2B	Os05g0346200	LOC_Os05g27930	 ga 	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsDREB2B	Os05g0346200	LOC_Os05g27930	height	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsDREB2B	Os05g0346200	LOC_Os05g27930	plant height	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsDREB2B	Os05g0346200	LOC_Os05g27930	GA	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 In summary, our study suggests that OsDREB2B plays a negative role in rice growth and development by regulating GA metabolic gene expression, which is mediated by OsAP2-39 and OsWRKY21, thereby reducing GA content and rice plant height
OsDREB2B	Os05g0346200	LOC_Os05g27930	transcription activator	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	 OsDREB2B localized to the nucleus of the rice protoplast acted as a transcription activator and upregulated OsAP2-39 by directly binding to its promoter
OsDREB4-1|CR223	Os02g0656600	LOC_Os02g43940	sheath	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-1|CR223	Os02g0656600	LOC_Os02g43940	growth	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-1|CR223	Os02g0656600	LOC_Os02g43940	salt	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	In rice seedlings, expression of OsDREB4-1 was induced by dehydration and high salt, whereas OsDREBl-l and OsDREB4-2 were expressed constitutively
OsDREB4-1|CR223	Os02g0656600	LOC_Os02g43940	leaf	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-1|CR223	Os02g0656600	LOC_Os02g43940	root	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-1|CR223	Os02g0656600	LOC_Os02g43940	seedling	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	In rice seedlings, expression of OsDREB4-1 was induced by dehydration and high salt, whereas OsDREBl-l and OsDREB4-2 were expressed constitutively
OsDREB4-1|CR223	Os02g0656600	LOC_Os02g43940	stem	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-2|CR250|OsAP2	Os04g0549700	LOC_Os04g46400	sheath	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-2|CR250|OsAP2	Os04g0549700	LOC_Os04g46400	seedling	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	In rice seedlings, expression of OsDREB4-1 was induced by dehydration and high salt, whereas OsDREBl-l and OsDREB4-2 were expressed constitutively
OsDREB4-2|CR250|OsAP2	Os04g0549700	LOC_Os04g46400	stem	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-2|CR250|OsAP2	Os04g0549700	LOC_Os04g46400	growth	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-2|CR250|OsAP2	Os04g0549700	LOC_Os04g46400	leaf	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-2|CR250|OsAP2	Os04g0549700	LOC_Os04g46400	root	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	Under normal growth conditions, OsDREBI-1 was expressed strongly in the leaf, sheath, and spike, was expressed relatively weak in the stem and only faintly expressed in the roots, whereas expression of transcripts of OsDREB4-1 and OsDREB4-2 was higher in the roots, stem, and spike, lower in the leaf, and undetectable in the sheath
OsDREB4-2|CR250|OsAP2	Os04g0549700	LOC_Os04g46400	salt	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	In rice seedlings, expression of OsDREB4-1 was induced by dehydration and high salt, whereas OsDREBl-l and OsDREB4-2 were expressed constitutively
OsDRF1	Os04g0431200	LOC_Os04g35190	defense response	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Expression of OsDRF1 was induced upon treatment with benzothiadiazole (BTH), a chemical inducer of defense responses in rice
OsDRF1	Os04g0431200	LOC_Os04g35190	disease	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Overexpression of OsDRF1 in transgenic tobacco resulted in enhanced disease resistance against tomato mosaic virus (ToMV) and Pseudomonas syringae pv
OsDRF1	Os04g0431200	LOC_Os04g35190	disease	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	The results suggest that OsDRF1 plays a role in disease resistance via upregulating defense-related gene expression and that OsDRF1 may also be involved in the response to ABA
OsDRF1	Os04g0431200	LOC_Os04g35190	disease	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression
OsDRF1	Os04g0431200	LOC_Os04g35190	defense	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	A rice defense-related F-box protein gene, OsDRF1, was cloned and identified during a course of study aimed at elucidating the molecular basis of induced immunity in rice
OsDRF1	Os04g0431200	LOC_Os04g35190	defense	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Expression of OsDRF1 was induced upon treatment with benzothiadiazole (BTH), a chemical inducer of defense responses in rice
OsDRF1	Os04g0431200	LOC_Os04g35190	defense	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	The results suggest that OsDRF1 plays a role in disease resistance via upregulating defense-related gene expression and that OsDRF1 may also be involved in the response to ABA
OsDRF1	Os04g0431200	LOC_Os04g35190	defense	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression
OsDRF1	Os04g0431200	LOC_Os04g35190	blast	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Moreover, in BTH-treated rice seedlings, expression of OsDRF1 was further induced by infection with Magnaporthe grisea, the rice blast fungus, compared with those in water-treated seedlings
OsDRF1	Os04g0431200	LOC_Os04g35190	disease resistance	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Overexpression of OsDRF1 in transgenic tobacco resulted in enhanced disease resistance against tomato mosaic virus (ToMV) and Pseudomonas syringae pv
OsDRF1	Os04g0431200	LOC_Os04g35190	disease resistance	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	The results suggest that OsDRF1 plays a role in disease resistance via upregulating defense-related gene expression and that OsDRF1 may also be involved in the response to ABA
OsDRF1	Os04g0431200	LOC_Os04g35190	disease resistance	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression
OsDRF1	Os04g0431200	LOC_Os04g35190	seedling	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Moreover, in BTH-treated rice seedlings, expression of OsDRF1 was further induced by infection with Magnaporthe grisea, the rice blast fungus, compared with those in water-treated seedlings
OsDRF1	Os04g0431200	LOC_Os04g35190	seedling	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	OsDRF1 was also upregulated in rice seedlings after treatment with ABA
OsDRF1	Os04g0431200	LOC_Os04g35190	seedling	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Root elongation of the OsDRF1-overexpressing transgenic seedlings was significantly inhibited by ABA, indicating that overexpression of OsDRF1 resulted in increased ABA sensitivity
OsDRF1	Os04g0431200	LOC_Os04g35190	root	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Root elongation of the OsDRF1-overexpressing transgenic seedlings was significantly inhibited by ABA, indicating that overexpression of OsDRF1 resulted in increased ABA sensitivity
OsDRF1	Os04g0431200	LOC_Os04g35190	ABA	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Root elongation of the OsDRF1-overexpressing transgenic seedlings was significantly inhibited by ABA, indicating that overexpression of OsDRF1 resulted in increased ABA sensitivity
OsDRM2	Os03g0110800	LOC_Os03g02010	dwarf	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Whereas Arabidopsis drm1 drm2 double mutants showed no morphological alterations, targeted disruptants of rice OsDRM2 displayed pleiotropic developmental phenotypes in both vegetative and reproductive stages, including growth defects, semi-dwarfed stature, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility
OsDRM2	Os03g0110800	LOC_Os03g02010	spikelet	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Whereas Arabidopsis drm1 drm2 double mutants showed no morphological alterations, targeted disruptants of rice OsDRM2 displayed pleiotropic developmental phenotypes in both vegetative and reproductive stages, including growth defects, semi-dwarfed stature, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility
OsDRM2	Os03g0110800	LOC_Os03g02010	tiller	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Whereas Arabidopsis drm1 drm2 double mutants showed no morphological alterations, targeted disruptants of rice OsDRM2 displayed pleiotropic developmental phenotypes in both vegetative and reproductive stages, including growth defects, semi-dwarfed stature, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility
OsDRM2	Os03g0110800	LOC_Os03g02010	reproductive	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Whereas Arabidopsis drm1 drm2 double mutants showed no morphological alterations, targeted disruptants of rice OsDRM2 displayed pleiotropic developmental phenotypes in both vegetative and reproductive stages, including growth defects, semi-dwarfed stature, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility
OsDRM2	Os03g0110800	LOC_Os03g02010	reproductive	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Our results suggest that OsDRM2 is responsible for de novo, CG and non-CG methylation in rice genomic sequences, and that DNA methylation regulated by OsDRM2 is essential for proper rice development in both vegetative and reproductive stages
OsDRM2	Os03g0110800	LOC_Os03g02010	sterility	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Whereas Arabidopsis drm1 drm2 double mutants showed no morphological alterations, targeted disruptants of rice OsDRM2 displayed pleiotropic developmental phenotypes in both vegetative and reproductive stages, including growth defects, semi-dwarfed stature, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility
OsDRM2	Os03g0110800	LOC_Os03g02010	growth	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Whereas Arabidopsis drm1 drm2 double mutants showed no morphological alterations, targeted disruptants of rice OsDRM2 displayed pleiotropic developmental phenotypes in both vegetative and reproductive stages, including growth defects, semi-dwarfed stature, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility
OsDRM2	Os03g0110800	LOC_Os03g02010	growth	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Impaired growth and abnormal DNA methylation of osdrm2 disruptants were restored by the complementation of wild-type OsDRM2 cDNA
OsDRM2	Os03g0110800	LOC_Os03g02010	growth	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation
OsDRM2	Os03g0110800	LOC_Os03g02010	vegetative	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Whereas Arabidopsis drm1 drm2 double mutants showed no morphological alterations, targeted disruptants of rice OsDRM2 displayed pleiotropic developmental phenotypes in both vegetative and reproductive stages, including growth defects, semi-dwarfed stature, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility
OsDRM2	Os03g0110800	LOC_Os03g02010	vegetative	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Our results suggest that OsDRM2 is responsible for de novo, CG and non-CG methylation in rice genomic sequences, and that DNA methylation regulated by OsDRM2 is essential for proper rice development in both vegetative and reproductive stages
OsDRM2	Os03g0110800	LOC_Os03g02010	panicle	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Whereas Arabidopsis drm1 drm2 double mutants showed no morphological alterations, targeted disruptants of rice OsDRM2 displayed pleiotropic developmental phenotypes in both vegetative and reproductive stages, including growth defects, semi-dwarfed stature, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility
OsDRM2	Os03g0110800	LOC_Os03g02010	tiller number	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation	Whereas Arabidopsis drm1 drm2 double mutants showed no morphological alterations, targeted disruptants of rice OsDRM2 displayed pleiotropic developmental phenotypes in both vegetative and reproductive stages, including growth defects, semi-dwarfed stature, reductions in tiller number, delayed heading or no heading, abnormal panicle and spikelet morphology, and complete sterility
OsDRP1E	Os09g0572900	LOC_Os09g39960	mitochondria	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of Cytochrome c from Mitochondria.	Furthermore, confocal microscopy showed that the E409V mutation impairs localization of OsDRP1E to the mitochondria
OsDRP1E	Os09g0572900	LOC_Os09g39960	map-based cloning	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of Cytochrome c from Mitochondria.	We used a map-based cloning strategy to isolate OsDRP1E from the lesion mimic mutant dj-lm and confirmed that the E409V mutation in OsDRP1E causes spontaneous cell death in rice
OsDRP1E	Os09g0572900	LOC_Os09g39960	cell death	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of Cytochrome c from Mitochondria.	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of Cytochrome c from Mitochondria.
OsDRP1E	Os09g0572900	LOC_Os09g39960	cell death	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of Cytochrome c from Mitochondria.	We used a map-based cloning strategy to isolate OsDRP1E from the lesion mimic mutant dj-lm and confirmed that the E409V mutation in OsDRP1E causes spontaneous cell death in rice
OsDRP1E	Os09g0572900	LOC_Os09g39960	PCD	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of Cytochrome c from Mitochondria.	Taken together, our results demonstrate that the mitochondria-localized protein OsDRP1E functions as a negative regulator of cytochrome c release and PCD in plants
OsDRP1E	Os09g0572900	LOC_Os09g39960	lesion	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of Cytochrome c from Mitochondria.	We used a map-based cloning strategy to isolate OsDRP1E from the lesion mimic mutant dj-lm and confirmed that the E409V mutation in OsDRP1E causes spontaneous cell death in rice
OsDRP1E	Os09g0572900	LOC_Os09g39960	lesion mimic	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of Cytochrome c from Mitochondria.	We used a map-based cloning strategy to isolate OsDRP1E from the lesion mimic mutant dj-lm and confirmed that the E409V mutation in OsDRP1E causes spontaneous cell death in rice
OsDRZ1	Os03g0437100	LOC_Os03g32220	growth	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	Moreover overexpression of OsDRZ1 did not lead to growth inhibition but the promotion of rice growth, implying the potential application prospective of OsDRZ1 in engineering drought tolerant crops
OsDRZ1	Os03g0437100	LOC_Os03g32220	seedling	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	Overexpression of OsDRZ1 in rice increased seedling drought tolerance and the transgenic plants appeared to accumulate more free proline and less reactive oxygen species (ROS), and elevate the activities of antioxidant enzymes
OsDRZ1	Os03g0437100	LOC_Os03g32220	drought	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	Overexpression of OsDRZ1 in rice increased seedling drought tolerance and the transgenic plants appeared to accumulate more free proline and less reactive oxygen species (ROS), and elevate the activities of antioxidant enzymes
OsDRZ1	Os03g0437100	LOC_Os03g32220	drought	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	In contrast, RNA interference (RNAi) of OsDRZ1 led to lower activities of antioxidative response and more sensitivity to drought
OsDRZ1	Os03g0437100	LOC_Os03g32220	drought	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	RNA-seq analysis revealed that the genes down-regulated by OsDRZ1 were mostly down-regulated by drought, implying the critical role of OsDRZ1 in modulating drought responsive gene expression
OsDRZ1	Os03g0437100	LOC_Os03g32220	drought	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	Moreover overexpression of OsDRZ1 did not lead to growth inhibition but the promotion of rice growth, implying the potential application prospective of OsDRZ1 in engineering drought tolerant crops
OsDRZ1	Os03g0437100	LOC_Os03g32220	tolerance	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	Overexpression of OsDRZ1 in rice increased seedling drought tolerance and the transgenic plants appeared to accumulate more free proline and less reactive oxygen species (ROS), and elevate the activities of antioxidant enzymes
OsDRZ1	Os03g0437100	LOC_Os03g32220	abiotic stress	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	OsDRZ1 was expressed throughout all tissues examined and could be induced by multiple abiotic stresses
OsDRZ1	Os03g0437100	LOC_Os03g32220	drought tolerance	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	Overexpression of OsDRZ1 in rice increased seedling drought tolerance and the transgenic plants appeared to accumulate more free proline and less reactive oxygen species (ROS), and elevate the activities of antioxidant enzymes
OsDRZ1	Os03g0437100	LOC_Os03g32220	nucleus	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	OsDRZ1 protein was localized mostly in nucleus
OsDRZ1	Os03g0437100	LOC_Os03g32220	biotic stress	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	OsDRZ1 was expressed throughout all tissues examined and could be induced by multiple abiotic stresses
OsDRZ1	Os03g0437100	LOC_Os03g32220	transcriptional activator	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	Unlike most reported rice ZFPs functioning as transcriptional activators, OsDRZ1 is a transcriptional repressor
OsDRZ1	Os03g0437100	LOC_Os03g32220	reactive oxygen species	A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes.	Overexpression of OsDRZ1 in rice increased seedling drought tolerance and the transgenic plants appeared to accumulate more free proline and less reactive oxygen species (ROS), and elevate the activities of antioxidant enzymes
OsDSG1	Os09g0434200	LOC_Os09g26400	ABA	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice	In the osdsg1 mutant, transcript levels of ABA signaling genes and ABA responsive genes were significantly increased
OsDSG1	Os09g0434200	LOC_Os09g26400	ABA	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice	These observations support that OsDSG1 is a major regulator of ABA signaling in germinating seeds
OsDSG1	Os09g0434200	LOC_Os09g26400	root	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice	Real-time PCR analysis revealed that OsDSG1 was expressed in leaves and roots, and strongly in developing seeds
OsDSG1	Os09g0434200	LOC_Os09g26400	seed	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice	There, T-DNA was inserted into Oryza sativa Delayed Seed Germination 1 (OsDSG1), causing a recessive null mutation
OsDSG1	Os09g0434200	LOC_Os09g26400	seed	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice	Real-time PCR analysis revealed that OsDSG1 was expressed in leaves and roots, and strongly in developing seeds
OsDSG1	Os09g0434200	LOC_Os09g26400	seed	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice	These observations support that OsDSG1 is a major regulator of ABA signaling in germinating seeds
OsDSG1	Os09g0434200	LOC_Os09g26400	seed	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice
OsDSG1	Os09g0434200	LOC_Os09g26400	seed germination	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice	There, T-DNA was inserted into Oryza sativa Delayed Seed Germination 1 (OsDSG1), causing a recessive null mutation
OsDSG1	Os09g0434200	LOC_Os09g26400	seed germination	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice
OsDSK2a	Os03g0131300	LOC_Os03g03920	growth	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.
OsDSK2a	Os03g0131300	LOC_Os03g03920	growth	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Here, we demonstrate that the novel UBL-UBA protein OsDSK2a (DOMINANT SUPPRESSOR of KAR2) mediates seedling growth and salt responses in rice (Oryza sativa)
OsDSK2a	Os03g0131300	LOC_Os03g03920	growth	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Bioactive GA levels were reduced and plant growth was retarded in the osdsk2a mutant
OsDSK2a	Os03g0131300	LOC_Os03g03920	growth	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Thus, OsDSK2a and EUI play opposite roles in regulating plant growth under salt stress by affecting GA metabolism
OsDSK2a	Os03g0131300	LOC_Os03g03920	growth	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Downregulation of the ubiquitin-binding receptor OsDSK2a increases EUI accumulation, which promotes GA metabolism and reduces plant growth under salt stress
OsDSK2a	Os03g0131300	LOC_Os03g03920	seedling	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.
OsDSK2a	Os03g0131300	LOC_Os03g03920	seedling	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Here, we demonstrate that the novel UBL-UBA protein OsDSK2a (DOMINANT SUPPRESSOR of KAR2) mediates seedling growth and salt responses in rice (Oryza sativa)
OsDSK2a	Os03g0131300	LOC_Os03g03920	seedling	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Through analysis of osdsk2a, a mutant with retarded seedling growth, as well as in vitro and in vivo assays, we demonstrated that OsDSK2a combines with polyubiquitin chains and interacts with the gibberellin (GA)-deactivating enzyme ELONGATED UPPERMOST INTERNODE (EUI), resulting in its degradation through the ubiquitin-proteasome system
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Here, we demonstrate that the novel UBL-UBA protein OsDSK2a (DOMINANT SUPPRESSOR of KAR2) mediates seedling growth and salt responses in rice (Oryza sativa)
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	OsDSK2a levels decreased in plant under salt stress
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Moreover, EUI accumulated under salt stress more rapidly in osdsk2a than in wild-type plants
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Thus, OsDSK2a and EUI play opposite roles in regulating plant growth under salt stress by affecting GA metabolism
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Downregulation of the ubiquitin-binding receptor OsDSK2a increases EUI accumulation, which promotes GA metabolism and reduces plant growth under salt stress
OsDSK2a	Os03g0131300	LOC_Os03g03920	gibberellin	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.
OsDSK2a	Os03g0131300	LOC_Os03g03920	gibberellin	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Through analysis of osdsk2a, a mutant with retarded seedling growth, as well as in vitro and in vivo assays, we demonstrated that OsDSK2a combines with polyubiquitin chains and interacts with the gibberellin (GA)-deactivating enzyme ELONGATED UPPERMOST INTERNODE (EUI), resulting in its degradation through the ubiquitin-proteasome system
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt stress	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	OsDSK2a levels decreased in plant under salt stress
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt stress	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Moreover, EUI accumulated under salt stress more rapidly in osdsk2a than in wild-type plants
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt stress	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Thus, OsDSK2a and EUI play opposite roles in regulating plant growth under salt stress by affecting GA metabolism
OsDSK2a	Os03g0131300	LOC_Os03g03920	salt stress	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Downregulation of the ubiquitin-binding receptor OsDSK2a increases EUI accumulation, which promotes GA metabolism and reduces plant growth under salt stress
OsDSK2a	Os03g0131300	LOC_Os03g03920	stress	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	OsDSK2a levels decreased in plant under salt stress
OsDSK2a	Os03g0131300	LOC_Os03g03920	stress	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Moreover, EUI accumulated under salt stress more rapidly in osdsk2a than in wild-type plants
OsDSK2a	Os03g0131300	LOC_Os03g03920	stress	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Thus, OsDSK2a and EUI play opposite roles in regulating plant growth under salt stress by affecting GA metabolism
OsDSK2a	Os03g0131300	LOC_Os03g03920	stress	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Downregulation of the ubiquitin-binding receptor OsDSK2a increases EUI accumulation, which promotes GA metabolism and reduces plant growth under salt stress
OsDSK2a	Os03g0131300	LOC_Os03g03920	plant growth	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Bioactive GA levels were reduced and plant growth was retarded in the osdsk2a mutant
OsDSK2a	Os03g0131300	LOC_Os03g03920	plant growth	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Thus, OsDSK2a and EUI play opposite roles in regulating plant growth under salt stress by affecting GA metabolism
OsDSK2a	Os03g0131300	LOC_Os03g03920	plant growth	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Downregulation of the ubiquitin-binding receptor OsDSK2a increases EUI accumulation, which promotes GA metabolism and reduces plant growth under salt stress
OsDSK2a	Os03g0131300	LOC_Os03g03920	ga	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Bioactive GA levels were reduced and plant growth was retarded in the osdsk2a mutant
OsDSK2a	Os03g0131300	LOC_Os03g03920	ga	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Thus, OsDSK2a and EUI play opposite roles in regulating plant growth under salt stress by affecting GA metabolism
OsDSK2a	Os03g0131300	LOC_Os03g03920	ga	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Downregulation of the ubiquitin-binding receptor OsDSK2a increases EUI accumulation, which promotes GA metabolism and reduces plant growth under salt stress
OsDSK2a	Os03g0131300	LOC_Os03g03920	Gibberellin	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.
OsDSK2a	Os03g0131300	LOC_Os03g03920	Gibberellin	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Through analysis of osdsk2a, a mutant with retarded seedling growth, as well as in vitro and in vivo assays, we demonstrated that OsDSK2a combines with polyubiquitin chains and interacts with the gibberellin (GA)-deactivating enzyme ELONGATED UPPERMOST INTERNODE (EUI), resulting in its degradation through the ubiquitin-proteasome system
OsDSK2a	Os03g0131300	LOC_Os03g03920	GA	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Bioactive GA levels were reduced and plant growth was retarded in the osdsk2a mutant
OsDSK2a	Os03g0131300	LOC_Os03g03920	GA	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Thus, OsDSK2a and EUI play opposite roles in regulating plant growth under salt stress by affecting GA metabolism
OsDSK2a	Os03g0131300	LOC_Os03g03920	GA	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Downregulation of the ubiquitin-binding receptor OsDSK2a increases EUI accumulation, which promotes GA metabolism and reduces plant growth under salt stress
OsDSR-1	Os10g0177200	LOC_Os10g09850	drought	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Rice gene Oryza sativa Drought Stress Response-1 (OsDSR-1) was one of the genes identified to be responsive to drought stress in the panicle of rice at booting and heading stages by both microarray and quantitative real-time PCR analyses
OsDSR-1	Os10g0177200	LOC_Os10g09850	potassium	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Further analysis showed that external Ca2+ was required for the production of larger root systems, indicating that the promotion by OsDSR-1 of the LR development of transgenic Arabidopsis seemed to occur in a Ca2+-dependent manner under high-potassium conditions
OsDSR-1	Os10g0177200	LOC_Os10g09850	potassium	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	We propose that OsDSR-1 may function as a calcium sensor of the signal transduction pathway controlling the LR development under high-potassium conditions
OsDSR-1	Os10g0177200	LOC_Os10g09850	potassium	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions
OsDSR-1	Os10g0177200	LOC_Os10g09850	root development	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions
OsDSR-1	Os10g0177200	LOC_Os10g09850	lateral root	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	OsDSR-1 encodes a putative calcium-binding protein, and its overexpression in Arabidopsis rendered transgenic plants to produce much shorter lateral roots (LRs) than wild-type (WT) plants in the medium supplemented with abscisic acid (ABA), suggesting that OsDSR-1 may act as a positive regulator during the process of ABA inhibition of LR development
OsDSR-1	Os10g0177200	LOC_Os10g09850	lateral root	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions
OsDSR-1	Os10g0177200	LOC_Os10g09850	root	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	OsDSR-1 encodes a putative calcium-binding protein, and its overexpression in Arabidopsis rendered transgenic plants to produce much shorter lateral roots (LRs) than wild-type (WT) plants in the medium supplemented with abscisic acid (ABA), suggesting that OsDSR-1 may act as a positive regulator during the process of ABA inhibition of LR development
OsDSR-1	Os10g0177200	LOC_Os10g09850	root	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Further analysis showed that external Ca2+ was required for the production of larger root systems, indicating that the promotion by OsDSR-1 of the LR development of transgenic Arabidopsis seemed to occur in a Ca2+-dependent manner under high-potassium conditions
OsDSR-1	Os10g0177200	LOC_Os10g09850	root	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions
OsDSR-1	Os10g0177200	LOC_Os10g09850	panicle	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Rice gene Oryza sativa Drought Stress Response-1 (OsDSR-1) was one of the genes identified to be responsive to drought stress in the panicle of rice at booting and heading stages by both microarray and quantitative real-time PCR analyses
OsDSR-1	Os10g0177200	LOC_Os10g09850	ABA	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	OsDSR-1 encodes a putative calcium-binding protein, and its overexpression in Arabidopsis rendered transgenic plants to produce much shorter lateral roots (LRs) than wild-type (WT) plants in the medium supplemented with abscisic acid (ABA), suggesting that OsDSR-1 may act as a positive regulator during the process of ABA inhibition of LR development
OsDSR2	Os01g0839200	LOC_Os01g62200	salt	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	In this study, a member of the DUF966 gene family, DUF966-stress repressive gene 2 in Oryza sativa (OsDSR2, Loc_Os01g62200), was cloned and its role in rice responding to salt and simulated drought stresses was functionally characterized
OsDSR2	Os01g0839200	LOC_Os01g62200	salt	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Expression profile analysis of adversity showed that OsDSR2 had different transcriptional responses to salt, drought, cold, heat and oxidative (H2O2) stresses, as well as abscisic acid (ABA), methyl jasmonate, salicylic acid, gibberellin acid and auxin treatments
OsDSR2	Os01g0839200	LOC_Os01g62200	salt	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsDSR2	Os01g0839200	LOC_Os01g62200	salt	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	These results suggested that OsDSR2 negatively regulated rice response to salt and simulated drought stresses as well as ABA signaling, which provided some useful data for understanding the functional roles of DUF966 family genes in abiotic stress responses in plants
OsDSR2	Os01g0839200	LOC_Os01g62200	salt	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice
OsDSR2	Os01g0839200	LOC_Os01g62200	leaf	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	OsDSR2 was expressed mainly in nodes of stems and leaf blades from rice
OsDSR2	Os01g0839200	LOC_Os01g62200	gibberellin	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Expression profile analysis of adversity showed that OsDSR2 had different transcriptional responses to salt, drought, cold, heat and oxidative (H2O2) stresses, as well as abscisic acid (ABA), methyl jasmonate, salicylic acid, gibberellin acid and auxin treatments
OsDSR2	Os01g0839200	LOC_Os01g62200	oxidative	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Expression profile analysis of adversity showed that OsDSR2 had different transcriptional responses to salt, drought, cold, heat and oxidative (H2O2) stresses, as well as abscisic acid (ABA), methyl jasmonate, salicylic acid, gibberellin acid and auxin treatments
OsDSR2	Os01g0839200	LOC_Os01g62200	stem	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	OsDSR2 was expressed mainly in nodes of stems and leaf blades from rice
OsDSR2	Os01g0839200	LOC_Os01g62200	abiotic stress	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	These results suggested that OsDSR2 negatively regulated rice response to salt and simulated drought stresses as well as ABA signaling, which provided some useful data for understanding the functional roles of DUF966 family genes in abiotic stress responses in plants
OsDSR2	Os01g0839200	LOC_Os01g62200	salicylic acid	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Expression profile analysis of adversity showed that OsDSR2 had different transcriptional responses to salt, drought, cold, heat and oxidative (H2O2) stresses, as well as abscisic acid (ABA), methyl jasmonate, salicylic acid, gibberellin acid and auxin treatments
OsDSR2	Os01g0839200	LOC_Os01g62200	ABA	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Furthermore, OsDSR2-overexpressing plants showed reduced ABA sensitivity during the post-germination stage
OsDSR2	Os01g0839200	LOC_Os01g62200	ABA	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	These results suggested that OsDSR2 negatively regulated rice response to salt and simulated drought stresses as well as ABA signaling, which provided some useful data for understanding the functional roles of DUF966 family genes in abiotic stress responses in plants
OsDSR2	Os01g0839200	LOC_Os01g62200	ABA	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice
OsDSR2	Os01g0839200	LOC_Os01g62200	auxin	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Expression profile analysis of adversity showed that OsDSR2 had different transcriptional responses to salt, drought, cold, heat and oxidative (H2O2) stresses, as well as abscisic acid (ABA), methyl jasmonate, salicylic acid, gibberellin acid and auxin treatments
OsDSR2	Os01g0839200	LOC_Os01g62200	jasmonate	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Expression profile analysis of adversity showed that OsDSR2 had different transcriptional responses to salt, drought, cold, heat and oxidative (H2O2) stresses, as well as abscisic acid (ABA), methyl jasmonate, salicylic acid, gibberellin acid and auxin treatments
OsDSR2	Os01g0839200	LOC_Os01g62200	ethylene	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsDSR2	Os01g0839200	LOC_Os01g62200	drought	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	In this study, a member of the DUF966 gene family, DUF966-stress repressive gene 2 in Oryza sativa (OsDSR2, Loc_Os01g62200), was cloned and its role in rice responding to salt and simulated drought stresses was functionally characterized
OsDSR2	Os01g0839200	LOC_Os01g62200	drought	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Expression profile analysis of adversity showed that OsDSR2 had different transcriptional responses to salt, drought, cold, heat and oxidative (H2O2) stresses, as well as abscisic acid (ABA), methyl jasmonate, salicylic acid, gibberellin acid and auxin treatments
OsDSR2	Os01g0839200	LOC_Os01g62200	drought	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsDSR2	Os01g0839200	LOC_Os01g62200	drought	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	These results suggested that OsDSR2 negatively regulated rice response to salt and simulated drought stresses as well as ABA signaling, which provided some useful data for understanding the functional roles of DUF966 family genes in abiotic stress responses in plants
OsDSR2	Os01g0839200	LOC_Os01g62200	drought	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice
OsDSS1	Os03g0140300	None	growth	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in  rice (Oryza sativa L.)	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in  rice (Oryza sativa L.)
OsDSS1	Os03g0140300	None	drought stress response	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in  rice (Oryza sativa L.)	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in  rice (Oryza sativa L.)
OsDSS1	Os03g0140300	None	drought stress	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in  rice (Oryza sativa L.)	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in  rice (Oryza sativa L.)
OsDSS1	Os03g0140300	None	drought	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in  rice (Oryza sativa L.)	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in  rice (Oryza sativa L.)
OsDSSR1	Os09g0109600	LOC_Os09g02180	drought	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Transgenic plants overexpressing OsDSSR1 exhibited enhanced drought stress tolerance and decreased ABA sensitivity as compared to the wild type
OsDSSR1	Os09g0109600	LOC_Os09g02180	tolerance	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Transgenic plants overexpressing OsDSSR1 exhibited enhanced drought stress tolerance and decreased ABA sensitivity as compared to the wild type
OsDSSR1	Os09g0109600	LOC_Os09g02180	ABA	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Transgenic plants overexpressing OsDSSR1 exhibited enhanced drought stress tolerance and decreased ABA sensitivity as compared to the wild type
OsDSSR1	Os09g0109600	LOC_Os09g02180	stress	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Transgenic plants overexpressing OsDSSR1 exhibited enhanced drought stress tolerance and decreased ABA sensitivity as compared to the wild type
OsDSSR1	Os09g0109600	LOC_Os09g02180	cytoplasm	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	OsDSSR1 is localized in the nucleus and cytoplasm
OsDSSR1	Os09g0109600	LOC_Os09g02180	nucleus	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	OsDSSR1 is localized in the nucleus and cytoplasm
OsDSSR1	Os09g0109600	LOC_Os09g02180	ABA	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Transgenic plants overexpressing OsDSSR1 exhibited enhanced drought stress tolerance and decreased ABA sensitivity as compared to the wild type
OsDSSR1	Os09g0109600	LOC_Os09g02180	drought stress	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Transgenic plants overexpressing OsDSSR1 exhibited enhanced drought stress tolerance and decreased ABA sensitivity as compared to the wild type
OsDSSR1	Os09g0109600	LOC_Os09g02180	drought stress	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Transgenic plants overexpressing OsDSSR1 exhibited enhanced drought stress tolerance and decreased ABA sensitivity as compared to the wild type
OsDSSR1	Os09g0109600	LOC_Os09g02180	stress tolerance	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Transgenic plants overexpressing OsDSSR1 exhibited enhanced drought stress tolerance and decreased ABA sensitivity as compared to the wild type
OsDT11	Os11g0211800	LOC_Os11g10590	drought	Overexpression of OsDT11, which encodes a novel cysteine-rich peptide, enhances drought tolerance and increases ABA concentration in rice.	The suppression of OsDT11 expression resulted in an increased sensitivity to drought compared to wild-type expression
OsDTC2|OsKSL11	Os11g0474800	LOC_Os11g28530	transcription factor	Promoter analysis of the rice stemar-13-ene synthase gene OsDTC2, which is involved in the biosynthesis of the phytoalexin oryzalexin S	The region between -1709 and -1450 bp was found to contain six W-box motifs, which are putative recognition sites for WRKY transcription factors, as cis elements involved in elicitor-responsiveness and/or basic promoter activity of OsDTC2
OsDTS2|OsKSL4|OsKS4	Os04g0179700	LOC_Os04g10060	growth	Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa)	Here, we apply reverse genetics, using knock-outs of the relevant diterpene synthases (copalyl diphosphate synthase 4 (OsCPS4) and kaurene synthase-like 4 (OsKSL4)), to demonstrate that rice momilactones are involved in allelopathy, including suppressing growth of the widespread rice paddy weed, barnyard grass (Echinochloa crus-galli)
OsDTS2|OsKSL4|OsKS4	Os04g0179700	LOC_Os04g10060	root	Identification of syn-pimara-7,15-diene synthase reveals functional clustering of terpene synthases involved in rice phytoalexin/allelochemical biosynthesis	Further, OsDTS2 mRNA in leaves is up-regulated by conditions that stimulate phytoalexin biosynthesis but is constitutively expressed in roots, where momilactones are constantly synthesized as allelochemicals
OsDUF26|OsCRRSP55	Os03g0277600	LOC_Os03g16950	signal transduction	The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.	Genes involved in signal transduction processes (OsDUF26 and OsMPK6) and genes that function in calcium-mediated signalling processes (OsCBP, OsCaM and OsCML4) are also up-regulated in leaves of mycorrhizal rice plants in the absence of pathogen infection.
OsDUF810.7	Os10g0471000	LOC_Os10g33240	salt	[The Rice OsDUF810 Family: OsDUF810.7 May be Involved in the Tolerance to Salt and Drought].	[The Rice OsDUF810 Family: OsDUF810.7 May be Involved in the Tolerance to Salt and Drought].
OsDUF810.7	Os10g0471000	LOC_Os10g33240	tolerance	[The Rice OsDUF810 Family: OsDUF810.7 May be Involved in the Tolerance to Salt and Drought].	[The Rice OsDUF810 Family: OsDUF810.7 May be Involved in the Tolerance to Salt and Drought].
OsDUR3	Os10g0580400	LOC_Os10g42960	nitrogen	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis	* Quantitative reverse-transcription polymerase chain reaction (qPCR) analysis revealed upregulation of OsDUR3 in rice roots under nitrogen-deficiency and urea-resupply after nitrogen-starvation
OsDUR3	Os10g0580400	LOC_Os10g42960	transporter	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis	* A high-affinity urea transporter OsDUR3 from rice was functionally characterized here for the first time among crops
OsDUR3	Os10g0580400	LOC_Os10g42960	transporter	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis	Together with its plasma membrane localization detected by green fluorescent protein (GFP)-tagging and with findings that disruption of OsDUR3 by T-DNA reduces rice growth on urea and urea uptake, we suggest that OsDUR3 is an active urea transporter that plays a significant role in effective urea acquisition and utilisation in rice
OsDUR3	Os10g0580400	LOC_Os10g42960	growth	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis	Heterologous expression demonstrated that OsDUR3 restored yeast dur3-mutant growth on urea and facilitated urea import with a K(m) of c
OsDUR3	Os10g0580400	LOC_Os10g42960	growth	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis	Importantly, overexpression of OsDUR3 complemented the Arabidopsis atdur3-1 mutant, improving growth on low urea and increasing root urea-uptake markedly
OsDUR3	Os10g0580400	LOC_Os10g42960	growth	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis	Together with its plasma membrane localization detected by green fluorescent protein (GFP)-tagging and with findings that disruption of OsDUR3 by T-DNA reduces rice growth on urea and urea uptake, we suggest that OsDUR3 is an active urea transporter that plays a significant role in effective urea acquisition and utilisation in rice
OsDUR3	Os10g0580400	LOC_Os10g42960	root	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis	* Quantitative reverse-transcription polymerase chain reaction (qPCR) analysis revealed upregulation of OsDUR3 in rice roots under nitrogen-deficiency and urea-resupply after nitrogen-starvation
OsDUR3	Os10g0580400	LOC_Os10g42960	root	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis	Importantly, overexpression of OsDUR3 complemented the Arabidopsis atdur3-1 mutant, improving growth on low urea and increasing root urea-uptake markedly
OsDVR	Os03g0351200	LOC_Os03g22780	chloroplast development	Divinyl chlorophyll(ide) a can be converted to monovinyl chlorophyll(ide) a by a divinyl reductase in rice.	Divinyl chlorophyll(ide) a can be converted to monovinyl chlorophyll(ide) a by a divinyl reductase in rice.
OsDWARF|OsBRD1|OsBR6ox	Os03g0602300	LOC_Os03g40540	sheath	Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem	The OsDWARF gene was expressed at a low level in all of the examined tissues, with preferential expression in the leaf sheath, and the expression was negatively regulated by brassinolide treatment
OsDWARF|OsBRD1|OsBR6ox	Os03g0602300	LOC_Os03g40540	dwarf	Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem	Therefore, we cloned a rice gene, OsDWARF, which has a high sequence similarity to the tomato C-6 oxidase gene, DWARF
OsDWARF|OsBRD1|OsBR6ox	Os03g0602300	LOC_Os03g40540	dwarf	Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem	Introduction of the wild-type OsDWARF gene into brd1 rescued the abnormal phenotype of the mutants
OsDWARF|OsBRD1|OsBR6ox	Os03g0602300	LOC_Os03g40540	dwarf	Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem	The OsDWARF gene was expressed at a low level in all of the examined tissues, with preferential expression in the leaf sheath, and the expression was negatively regulated by brassinolide treatment
OsDWARF|OsBRD1|OsBR6ox	Os03g0602300	LOC_Os03g40540	leaf	Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem	The OsDWARF gene was expressed at a low level in all of the examined tissues, with preferential expression in the leaf sheath, and the expression was negatively regulated by brassinolide treatment
OsDWARF|OsBRD1|OsBR6ox	Os03g0602300	LOC_Os03g40540	growth	OsBR6ox, a member in the brassinosteroid synthetic pathway facilitates degradation of pesticides in rice through a specific DNA demethylation mechanism.	 Genetic disruption of OsBR6ox increased rice sensitivity and led to more accumulation of ATZ and ACT, whereas transgenic rice overexpressing OsBR6ox lines (OEs) showed opposite effects with improved growth and lower ATZ and ACT accumulation in various tissues, including grains
OsDWARF|OsBRD1|OsBR6ox	Os03g0602300	LOC_Os03g40540	stress	OsBR6ox, a member in the brassinosteroid synthetic pathway facilitates degradation of pesticides in rice through a specific DNA demethylation mechanism.	 OsBR6ox was transcriptionally induced under ATZ and ACT stress
OsDWARF|OsBRD1|OsBR6ox	Os03g0602300	LOC_Os03g40540	detoxification	OsBR6ox, a member in the brassinosteroid synthetic pathway facilitates degradation of pesticides in rice through a specific DNA demethylation mechanism.	 Such an epigenetic modification marker was responsible for the increased OsBR6ox expression and consequent detoxification of ATZ/ACT in rice and environment
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	brassinosteroid	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Here we show that the erect leaf phenotype of a rice brassinosteroid-deficient mutant, osdwarf4-1, is associated with enhanced grain yields under conditions of dense planting, even without extra fertilizer
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	brassinosteroid	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Molecular and biochemical studies reveal that two different cytochrome P450s, CYP90B2/OsDWARF4 and CYP724B1/D11, function redundantly in C-22 hydroxylation, the rate-limiting step of brassinosteroid biosynthesis
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	brassinosteroid	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Therefore, despite the central role of brassinosteroids in plant growth and development, mutation of OsDWARF4 alone causes only limited defects in brassinosteroid biosynthesis and plant morphology
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	grain	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Here we show that the erect leaf phenotype of a rice brassinosteroid-deficient mutant, osdwarf4-1, is associated with enhanced grain yields under conditions of dense planting, even without extra fertilizer
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	growth	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Therefore, despite the central role of brassinosteroids in plant growth and development, mutation of OsDWARF4 alone causes only limited defects in brassinosteroid biosynthesis and plant morphology
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	leaf	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Here we show that the erect leaf phenotype of a rice brassinosteroid-deficient mutant, osdwarf4-1, is associated with enhanced grain yields under conditions of dense planting, even without extra fertilizer
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	yield	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Here we show that the erect leaf phenotype of a rice brassinosteroid-deficient mutant, osdwarf4-1, is associated with enhanced grain yields under conditions of dense planting, even without extra fertilizer
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	dwarf	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Here we show that the erect leaf phenotype of a rice brassinosteroid-deficient mutant, osdwarf4-1, is associated with enhanced grain yields under conditions of dense planting, even without extra fertilizer
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	dwarf	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Molecular and biochemical studies reveal that two different cytochrome P450s, CYP90B2/OsDWARF4 and CYP724B1/D11, function redundantly in C-22 hydroxylation, the rate-limiting step of brassinosteroid biosynthesis
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	dwarf	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Therefore, despite the central role of brassinosteroids in plant growth and development, mutation of OsDWARF4 alone causes only limited defects in brassinosteroid biosynthesis and plant morphology
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	erect	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Here we show that the erect leaf phenotype of a rice brassinosteroid-deficient mutant, osdwarf4-1, is associated with enhanced grain yields under conditions of dense planting, even without extra fertilizer
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	dwarf	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Molecular and biochemical studies reveal that two different cytochrome P450s, CYP90B2/OsDWARF4 and CYP724B1/D11, function redundantly in C-22 hydroxylation, the rate-limiting step of brassinosteroid biosynthesis
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	grain yield	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Here we show that the erect leaf phenotype of a rice brassinosteroid-deficient mutant, osdwarf4-1, is associated with enhanced grain yields under conditions of dense planting, even without extra fertilizer
OsDWARF4|CYP90B2	Os03g0227700	LOC_Os03g12660	brassinosteroid	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice	Molecular and biochemical studies reveal that two different cytochrome P450s, CYP90B2/OsDWARF4 and CYP724B1/D11, function redundantly in C-22 hydroxylation, the rate-limiting step of brassinosteroid biosynthesis
OsDWD1	Os09g0363600	LOC_Os09g19900	resistance	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.	 After constructing the loss-of-function mutant OsDWD1(R239A) , we showed that the downregulation of OsNPR1 seen in rice lines overexpressing wild-type (WT) OsDWD1 (OsDWD1(WT) -ox) was compromised in OsDWD1(R239A) -ox lines, and that OsNPR1 upregulation enhanced resistance to pathogen infection, confirming that OsCRL4(OsDWD1) regulates OsNPR1 protein levels
OsDWD1	Os09g0363600	LOC_Os09g19900	resistance	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.	 The enhanced disease resistance seen in OsDWD1 knock-down (OsDWD1-kd) lines contrasted with the reduced disease resistance in double knock-down (OsDWD1/OsNPR1-kd) lines, indicating that the enhanced disease resistance of OsDWD1-kd resulted from the accumulation of OsNPR1
OsDWD1	Os09g0363600	LOC_Os09g19900	disease	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.	 The enhanced disease resistance seen in OsDWD1 knock-down (OsDWD1-kd) lines contrasted with the reduced disease resistance in double knock-down (OsDWD1/OsNPR1-kd) lines, indicating that the enhanced disease resistance of OsDWD1-kd resulted from the accumulation of OsNPR1
OsDWD1	Os09g0363600	LOC_Os09g19900	disease resistance	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.	 The enhanced disease resistance seen in OsDWD1 knock-down (OsDWD1-kd) lines contrasted with the reduced disease resistance in double knock-down (OsDWD1/OsNPR1-kd) lines, indicating that the enhanced disease resistance of OsDWD1-kd resulted from the accumulation of OsNPR1
OsDWD1	Os09g0363600	LOC_Os09g19900	defense	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.
OsDWD1	Os09g0363600	LOC_Os09g19900	pathogen	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.	 After constructing the loss-of-function mutant OsDWD1(R239A) , we showed that the downregulation of OsNPR1 seen in rice lines overexpressing wild-type (WT) OsDWD1 (OsDWD1(WT) -ox) was compromised in OsDWD1(R239A) -ox lines, and that OsNPR1 upregulation enhanced resistance to pathogen infection, confirming that OsCRL4(OsDWD1) regulates OsNPR1 protein levels
OsDWD1	Os09g0363600	LOC_Os09g19900	immune response	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.	 Knock-down and overexpression experiments in rice plants showed that OsDWD1 is a negative regulator of the immune response and that OsNPR1 is a substrate of OsDWD1 and a substrate receptor of OsCRL4
OsDWD1	Os09g0363600	LOC_Os09g19900	immune response	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.	 Taken together, these results indicate that OsDWD1 regulates OsNPR1 protein levels in rice to suppress the untimely activation of immune responses
OsDXS|OsDXS3	Os07g0190000	LOC_Os07g09190	pathogen	Identification of a small set of genes commonly regulated in rice roots in response to beneficial rhizobacteria	Interestingly, exposure to a rice bacterial pathogen also triggered the expression of OsDXS3 while the expression of Os02g0582900 and PR1b was down-regulated, suggesting that these genes might play a key role in rice-bacteria interactions
OsEATB	Os09g0457900	LOC_Os09g28440	branching	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	A rice AP2/ERF gene, OsEATB (for ERF protein associated with tillering and panicle branching) was cloned from indica rice variety 9311
OsEATB	Os09g0457900	LOC_Os09g28440	branching	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	OsEATB reduces rice plant height and panicle length at maturity, promoting the branching potential of both tillers and spikelets
OsEATB	Os09g0457900	LOC_Os09g28440	ethylene	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	Ectopic expression of OsEATB showed that the cross talk between ethylene and gibberellin, which is mediated by OsEATB, might underlie differences in rice internode elongation
OsEATB	Os09g0457900	LOC_Os09g28440	ethylene	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	Analyses of gene expression demonstrated that OsEATB restricts ethylene-induced enhancement of gibberellin responsiveness during the internode elongation process by down-regulating the gibberellin biosynthetic gene, ent-kaurene synthase A
OsEATB	Os09g0457900	LOC_Os09g28440	ethylene	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene
OsEATB	Os09g0457900	LOC_Os09g28440	gibberellin	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	Ectopic expression of OsEATB showed that the cross talk between ethylene and gibberellin, which is mediated by OsEATB, might underlie differences in rice internode elongation
OsEATB	Os09g0457900	LOC_Os09g28440	gibberellin	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	Analyses of gene expression demonstrated that OsEATB restricts ethylene-induced enhancement of gibberellin responsiveness during the internode elongation process by down-regulating the gibberellin biosynthetic gene, ent-kaurene synthase A
OsEATB	Os09g0457900	LOC_Os09g28440	gibberellin	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene
OsEATB	Os09g0457900	LOC_Os09g28440	panicle	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	A rice AP2/ERF gene, OsEATB (for ERF protein associated with tillering and panicle branching) was cloned from indica rice variety 9311
OsEATB	Os09g0457900	LOC_Os09g28440	panicle	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	OsEATB reduces rice plant height and panicle length at maturity, promoting the branching potential of both tillers and spikelets
OsEATB	Os09g0457900	LOC_Os09g28440	tillering	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	A rice AP2/ERF gene, OsEATB (for ERF protein associated with tillering and panicle branching) was cloned from indica rice variety 9311
OsEATB	Os09g0457900	LOC_Os09g28440	height	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	OsEATB reduces rice plant height and panicle length at maturity, promoting the branching potential of both tillers and spikelets
OsEATB	Os09g0457900	LOC_Os09g28440	tiller	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	A rice AP2/ERF gene, OsEATB (for ERF protein associated with tillering and panicle branching) was cloned from indica rice variety 9311
OsEATB	Os09g0457900	LOC_Os09g28440	tiller	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	OsEATB reduces rice plant height and panicle length at maturity, promoting the branching potential of both tillers and spikelets
OsEATB	Os09g0457900	LOC_Os09g28440	spikelet	Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene	OsEATB reduces rice plant height and panicle length at maturity, promoting the branching potential of both tillers and spikelets
OsEATB	Os09g0457900	LOC_Os09g28440	transporter	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ChIP-seq analysis identified that the direct targets of ONAC127 and ONAC129 in developing rice seeds include monosaccharide transporter OsMST6, sugar transporter OsSWEET4, calmodulin-like protein OsMSR2 and AP2/ERF factor OsEATB
OsEATB	Os09g0457900	LOC_Os09g28440	sugar	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ChIP-seq analysis identified that the direct targets of ONAC127 and ONAC129 in developing rice seeds include monosaccharide transporter OsMST6, sugar transporter OsSWEET4, calmodulin-like protein OsMSR2 and AP2/ERF factor OsEATB
OsEBF2	Os02g0200900	LOC_Os02g10700	resistance	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).
OsEBF2	Os02g0200900	LOC_Os02g10700	resistance	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).	 Our results indicated that OsEBF2 can directly interact with OsEIL1 and positively regulate rice resistance to BPH
OsEBF2	Os02g0200900	LOC_Os02g10700	resistance	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).	 The resistance mechanism of the OsEBF2 gene may be to reduce the content of ET in rice by inhibiting the expression of ethylene response factor genes
OsEBF2	Os02g0200900	LOC_Os02g10700	resistance	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).	 This study revealed that OsEBF2 is an F-box protein that positively regulates the rice resistance to BPH and can be used as an effective target gene for rice BPH resistance breeding
OsEBF2	Os02g0200900	LOC_Os02g10700	ethylene	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).	 The resistance mechanism of the OsEBF2 gene may be to reduce the content of ET in rice by inhibiting the expression of ethylene response factor genes
OsEBF2	Os02g0200900	LOC_Os02g10700	brown planthopper	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).
OsEBF2	Os02g0200900	LOC_Os02g10700	breeding	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).	 This study revealed that OsEBF2 is an F-box protein that positively regulates the rice resistance to BPH and can be used as an effective target gene for rice BPH resistance breeding
OsEBF2	Os02g0200900	LOC_Os02g10700	ethylene response	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).	 The resistance mechanism of the OsEBF2 gene may be to reduce the content of ET in rice by inhibiting the expression of ethylene response factor genes
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	seed	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	The results of northern blot hybridization experiments showed that the transcript of the OsEBP-89 gene accumulates primarily in immature seeds, roots, and leaves (low levels)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	seed	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	Expression of OsEBP-89 was induced in roots of rice seedlings by treatment with ACC, NaCl, or 2,4-D
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	seed	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	Collectively, these results suggest that the OsEBP-89 gene is a new member of the EREBP subfamily and may be involved in ethylene-dependent seed maturation and shoot development of rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	transcription factor	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	In this paper, we describe the cloning and characterization of a rice gene, OsEBP-89, encoding a protein 326 amino acids long with a typical EREBP domain; this is the first report of an EREBP transcription factor in a monocotyledonous plant
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	transcription factor	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	ethylene	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	OsEBP-89 gene encodes an ethylene responsive element binding protein (EREBP) transcription factor from rice (Oryza sativa)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	transcription factor	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	OsEBP-89 gene encodes an ethylene responsive element binding protein (EREBP) transcription factor from rice (Oryza sativa)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	transcription factor	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	seedling	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	Expression of OsEBP-89 was induced in roots of rice seedlings by treatment with ACC, NaCl, or 2,4-D
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	flower	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Northern blot analysis revealed that OsEBP-89 was expressed in root, stem, seeds, flowers and leaves of rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	shoot	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	Collectively, these results suggest that the OsEBP-89 gene is a new member of the EREBP subfamily and may be involved in ethylene-dependent seed maturation and shoot development of rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	meristem	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	adventitious root	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Histochemical assay showed that GUS expressed mainly in phloem of vascular tissues of the root and stem transition region (RST), basal part of sheath roots, stem node and basal part of adventitious roots, also in endosperm of seeds in transgenic rice harboring OsEBP-89/GUS construct (pNSG)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	root	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Northern blot analysis revealed that OsEBP-89 was expressed in root, stem, seeds, flowers and leaves of rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	root	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Histochemical assay showed that GUS expressed mainly in phloem of vascular tissues of the root and stem transition region (RST), basal part of sheath roots, stem node and basal part of adventitious roots, also in endosperm of seeds in transgenic rice harboring OsEBP-89/GUS construct (pNSG)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	stem	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Northern blot analysis revealed that OsEBP-89 was expressed in root, stem, seeds, flowers and leaves of rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	stem	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Histochemical assay showed that GUS expressed mainly in phloem of vascular tissues of the root and stem transition region (RST), basal part of sheath roots, stem node and basal part of adventitious roots, also in endosperm of seeds in transgenic rice harboring OsEBP-89/GUS construct (pNSG)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	intercalary meristem	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	root	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	The results of northern blot hybridization experiments showed that the transcript of the OsEBP-89 gene accumulates primarily in immature seeds, roots, and leaves (low levels)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	root	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	Expression of OsEBP-89 was induced in roots of rice seedlings by treatment with ACC, NaCl, or 2,4-D
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	ethylene	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	Collectively, these results suggest that the OsEBP-89 gene is a new member of the EREBP subfamily and may be involved in ethylene-dependent seed maturation and shoot development of rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	endosperm	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	Two cis-acting elements, an endosperm motif and a primary PERE, are present upstream of the OsEBP-89 coding region and may be involved in regulating its expression
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	endosperm	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	endosperm	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Histochemical assay showed that GUS expressed mainly in phloem of vascular tissues of the root and stem transition region (RST), basal part of sheath roots, stem node and basal part of adventitious roots, also in endosperm of seeds in transgenic rice harboring OsEBP-89/GUS construct (pNSG)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	sheath	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Histochemical assay showed that GUS expressed mainly in phloem of vascular tissues of the root and stem transition region (RST), basal part of sheath roots, stem node and basal part of adventitious roots, also in endosperm of seeds in transgenic rice harboring OsEBP-89/GUS construct (pNSG)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	seed	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Northern blot analysis revealed that OsEBP-89 was expressed in root, stem, seeds, flowers and leaves of rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	seed	Expressional analysis of an EREBP transcription factor gene OsEBP-89 in rice	Histochemical assay showed that GUS expressed mainly in phloem of vascular tissues of the root and stem transition region (RST), basal part of sheath roots, stem node and basal part of adventitious roots, also in endosperm of seeds in transgenic rice harboring OsEBP-89/GUS construct (pNSG)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	submergence	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	In this study, we reported that OsEBP89 (Oryza sativa Ethylene-responsive element binding protein, clone 89), a member of the AP2/ERF subfamily, is involved in a novel signal transduction associated with the tolerance to drought and submergence stress
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	submergence	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	OsEBP89 was found to be strongly inhibited by drought stress and promoted by submergence
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	growth	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Loss of OsEBP89 was found to improve the seed germination under submerged conditions and also enhanced the tolerance to drought stress throughout growth stage
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	seed	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Loss of OsEBP89 was found to improve the seed germination under submerged conditions and also enhanced the tolerance to drought stress throughout growth stage
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	In this study, we reported that OsEBP89 (Oryza sativa Ethylene-responsive element binding protein, clone 89), a member of the AP2/ERF subfamily, is involved in a novel signal transduction associated with the tolerance to drought and submergence stress
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	OsEBP89 was found to be strongly inhibited by drought stress and promoted by submergence
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Loss of OsEBP89 was found to improve the seed germination under submerged conditions and also enhanced the tolerance to drought stress throughout growth stage
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	seed germination	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Loss of OsEBP89 was found to improve the seed germination under submerged conditions and also enhanced the tolerance to drought stress throughout growth stage
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	tolerance	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	tolerance	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	In this study, we reported that OsEBP89 (Oryza sativa Ethylene-responsive element binding protein, clone 89), a member of the AP2/ERF subfamily, is involved in a novel signal transduction associated with the tolerance to drought and submergence stress
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	tolerance	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Loss of OsEBP89 was found to improve the seed germination under submerged conditions and also enhanced the tolerance to drought stress throughout growth stage
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	tolerance	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	These findings provide insight into the mechanism of abiotic stress tolerance, and suggest OsEBP89 as a new genetic engineering resource to improve abiotic stress tolerance in rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	abiotic stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	These findings provide insight into the mechanism of abiotic stress tolerance, and suggest OsEBP89 as a new genetic engineering resource to improve abiotic stress tolerance in rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	In this study, we reported that OsEBP89 (Oryza sativa Ethylene-responsive element binding protein, clone 89), a member of the AP2/ERF subfamily, is involved in a novel signal transduction associated with the tolerance to drought and submergence stress
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	OsEBP89 was found to be strongly inhibited by drought stress and promoted by submergence
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Loss of OsEBP89 was found to improve the seed germination under submerged conditions and also enhanced the tolerance to drought stress throughout growth stage
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	These findings provide insight into the mechanism of abiotic stress tolerance, and suggest OsEBP89 as a new genetic engineering resource to improve abiotic stress tolerance in rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	nucleus	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	The OsEBP89 protein was located at the nucleus in the rice protoplast
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	biotic stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	These findings provide insight into the mechanism of abiotic stress tolerance, and suggest OsEBP89 as a new genetic engineering resource to improve abiotic stress tolerance in rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	protein kinase	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Further results indicate that OsEBP89 can interact with and be phosphorylated by SnRK1 (sucrose non-fermenting-1-related protein kinase-1 gene)
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	OsEBP89 was found to be strongly inhibited by drought stress and promoted by submergence
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Loss of OsEBP89 was found to improve the seed germination under submerged conditions and also enhanced the tolerance to drought stress throughout growth stage
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	OsEBP89 was found to be strongly inhibited by drought stress and promoted by submergence
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	drought stress	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Loss of OsEBP89 was found to improve the seed germination under submerged conditions and also enhanced the tolerance to drought stress throughout growth stage
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	stress tolerance	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	These findings provide insight into the mechanism of abiotic stress tolerance, and suggest OsEBP89 as a new genetic engineering resource to improve abiotic stress tolerance in rice
OsEBP-89|OsEBP89	Os03g0182800	LOC_Os03g08460	signal transduction	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	In this study, we reported that OsEBP89 (Oryza sativa Ethylene-responsive element binding protein, clone 89), a member of the AP2/ERF subfamily, is involved in a novel signal transduction associated with the tolerance to drought and submergence stress
OsEBS	Os05g0591400	LOC_Os05g51360	vegetative	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Our results showed that the increased size of vegetative organs in OsEBS-expressed plants was enormously caused by increasing cell number
OsEBS	Os05g0591400	LOC_Os05g51360	leaf	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	We cloned and characterized qGP5-1 and confirmed that the newly identified gene OsEBS (enhancing biomass and spikelet number) increased plant height, leaf size and spikelet number per panicle, leading to an increase in total grain yield per plant
OsEBS	Os05g0591400	LOC_Os05g51360	height	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	We cloned and characterized qGP5-1 and confirmed that the newly identified gene OsEBS (enhancing biomass and spikelet number) increased plant height, leaf size and spikelet number per panicle, leading to an increase in total grain yield per plant
OsEBS	Os05g0591400	LOC_Os05g51360	spikelet	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	We cloned and characterized qGP5-1 and confirmed that the newly identified gene OsEBS (enhancing biomass and spikelet number) increased plant height, leaf size and spikelet number per panicle, leading to an increase in total grain yield per plant
OsEBS	Os05g0591400	LOC_Os05g51360	spikelet	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Together, we report the cloning and characterization of OsEBS, a new QTL that controls rice biomass and spikelet number, through map-based cloning, and it may have utility in improving grain yield in rice
OsEBS	Os05g0591400	LOC_Os05g51360	spikelet	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice
OsEBS	Os05g0591400	LOC_Os05g51360	grain	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	We cloned and characterized qGP5-1 and confirmed that the newly identified gene OsEBS (enhancing biomass and spikelet number) increased plant height, leaf size and spikelet number per panicle, leading to an increase in total grain yield per plant
OsEBS	Os05g0591400	LOC_Os05g51360	grain	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Together, we report the cloning and characterization of OsEBS, a new QTL that controls rice biomass and spikelet number, through map-based cloning, and it may have utility in improving grain yield in rice
OsEBS	Os05g0591400	LOC_Os05g51360	spikelet number	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	We cloned and characterized qGP5-1 and confirmed that the newly identified gene OsEBS (enhancing biomass and spikelet number) increased plant height, leaf size and spikelet number per panicle, leading to an increase in total grain yield per plant
OsEBS	Os05g0591400	LOC_Os05g51360	spikelet number	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Together, we report the cloning and characterization of OsEBS, a new QTL that controls rice biomass and spikelet number, through map-based cloning, and it may have utility in improving grain yield in rice
OsEBS	Os05g0591400	LOC_Os05g51360	spikelet number	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice
OsEBS	Os05g0591400	LOC_Os05g51360	grain yield	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	We cloned and characterized qGP5-1 and confirmed that the newly identified gene OsEBS (enhancing biomass and spikelet number) increased plant height, leaf size and spikelet number per panicle, leading to an increase in total grain yield per plant
OsEBS	Os05g0591400	LOC_Os05g51360	grain yield	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Together, we report the cloning and characterization of OsEBS, a new QTL that controls rice biomass and spikelet number, through map-based cloning, and it may have utility in improving grain yield in rice
OsEBS	Os05g0591400	LOC_Os05g51360	biomass	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	We cloned and characterized qGP5-1 and confirmed that the newly identified gene OsEBS (enhancing biomass and spikelet number) increased plant height, leaf size and spikelet number per panicle, leading to an increase in total grain yield per plant
OsEBS	Os05g0591400	LOC_Os05g51360	biomass	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Together, we report the cloning and characterization of OsEBS, a new QTL that controls rice biomass and spikelet number, through map-based cloning, and it may have utility in improving grain yield in rice
OsEBS	Os05g0591400	LOC_Os05g51360	biomass	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice
OsEBS	Os05g0591400	LOC_Os05g51360	panicle	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	We cloned and characterized qGP5-1 and confirmed that the newly identified gene OsEBS (enhancing biomass and spikelet number) increased plant height, leaf size and spikelet number per panicle, leading to an increase in total grain yield per plant
OsEBS	Os05g0591400	LOC_Os05g51360	yield	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	We cloned and characterized qGP5-1 and confirmed that the newly identified gene OsEBS (enhancing biomass and spikelet number) increased plant height, leaf size and spikelet number per panicle, leading to an increase in total grain yield per plant
OsEBS	Os05g0591400	LOC_Os05g51360	yield	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice	Together, we report the cloning and characterization of OsEBS, a new QTL that controls rice biomass and spikelet number, through map-based cloning, and it may have utility in improving grain yield in rice
OsECS	Os05g0129000	LOC_Os05g03820	grain	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses	Under paddy field conditions, OsECS-overexpression in transgenic rice plants increased rice grain yield (TGW) and improved biomass
OsECS	Os05g0129000	LOC_Os05g03820	grain	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses	Our findings suggest that increases in grain yield by OsECS overexpression could improve crop yields under natural environmental conditions
OsECS	Os05g0129000	LOC_Os05g03820	abiotic stress	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses	Overall, our results show that OsECS overexpression in transgenic rice increases tolerance and germination rate in the presence of abiotic stress by improving redox homeostasis via an enhanced GSH pool
OsECS	Os05g0129000	LOC_Os05g03820	yield	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses	Under paddy field conditions, OsECS-overexpression in transgenic rice plants increased rice grain yield (TGW) and improved biomass
OsECS	Os05g0129000	LOC_Os05g03820	yield	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses	Our findings suggest that increases in grain yield by OsECS overexpression could improve crop yields under natural environmental conditions
OsECS	Os05g0129000	LOC_Os05g03820	grain yield	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses	Under paddy field conditions, OsECS-overexpression in transgenic rice plants increased rice grain yield (TGW) and improved biomass
OsECS	Os05g0129000	LOC_Os05g03820	grain yield	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses	Our findings suggest that increases in grain yield by OsECS overexpression could improve crop yields under natural environmental conditions
OsECS	Os05g0129000	LOC_Os05g03820	homeostasis	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses	Overall, our results show that OsECS overexpression in transgenic rice increases tolerance and germination rate in the presence of abiotic stress by improving redox homeostasis via an enhanced GSH pool
OsECS	Os05g0129000	LOC_Os05g03820	biomass	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses	Under paddy field conditions, OsECS-overexpression in transgenic rice plants increased rice grain yield (TGW) and improved biomass
OsEDM2L	Os08g0502000	LOC_Os08g39250	transcription factor	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 OsEDM2L interacts with the transcription factors bHLH142 and TAPETUM DEGENERATION RETARDATION to regulate the expression of ETERNAL TAPETUM 1 (EAT1), a positive regulator of tapetal PCD
OsEDM2L	Os08g0502000	LOC_Os08g39250	development	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 The osedm2l knockout mutant showed delayed tapetal programmed cell death (PCD) and defective pollen development
OsEDM2L	Os08g0502000	LOC_Os08g39250	development	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 Therefore, OsEDM2L is indispensable for proper mRNA m6 A modification in rice anther development
OsEDM2L	Os08g0502000	LOC_Os08g39250	pollen	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 The osedm2l knockout mutant showed delayed tapetal programmed cell death (PCD) and defective pollen development
OsEDM2L	Os08g0502000	LOC_Os08g39250	anther	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 Therefore, OsEDM2L is indispensable for proper mRNA m6 A modification in rice anther development
OsEDM2L	Os08g0502000	LOC_Os08g39250	cell death	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 The osedm2l knockout mutant showed delayed tapetal programmed cell death (PCD) and defective pollen development
OsEDM2L	Os08g0502000	LOC_Os08g39250	anther development	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 Therefore, OsEDM2L is indispensable for proper mRNA m6 A modification in rice anther development
OsEDM2L	Os08g0502000	LOC_Os08g39250	tapetum	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 OsEDM2L interacts with the transcription factors bHLH142 and TAPETUM DEGENERATION RETARDATION to regulate the expression of ETERNAL TAPETUM 1 (EAT1), a positive regulator of tapetal PCD
OsEDM2L	Os08g0502000	LOC_Os08g39250	tapetal	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation
OsEDM2L	Os08g0502000	LOC_Os08g39250	tapetal	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 The osedm2l knockout mutant showed delayed tapetal programmed cell death (PCD) and defective pollen development
OsEDM2L	Os08g0502000	LOC_Os08g39250	tapetal	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 OsEDM2L interacts with the transcription factors bHLH142 and TAPETUM DEGENERATION RETARDATION to regulate the expression of ETERNAL TAPETUM 1 (EAT1), a positive regulator of tapetal PCD
OsEDM2L	Os08g0502000	LOC_Os08g39250	tapetal	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 Mutation of OsEDM2L altered the transcriptomic m6 A landscape, and caused a distinct m6 A modification of the EAT1 transcript leading to dysregulation of its alternative splicing and polyadenylation, followed by suppression of the EAT1 target genes OsAP25 and OsAP37 for tapetal PCD
OsEDM2L	Os08g0502000	LOC_Os08g39250	tapetum degeneration	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 OsEDM2L interacts with the transcription factors bHLH142 and TAPETUM DEGENERATION RETARDATION to regulate the expression of ETERNAL TAPETUM 1 (EAT1), a positive regulator of tapetal PCD
OsEDM2L	Os08g0502000	LOC_Os08g39250	pollen development	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 The osedm2l knockout mutant showed delayed tapetal programmed cell death (PCD) and defective pollen development
OsEDM2L	Os08g0502000	LOC_Os08g39250	PCD	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 OsEDM2L interacts with the transcription factors bHLH142 and TAPETUM DEGENERATION RETARDATION to regulate the expression of ETERNAL TAPETUM 1 (EAT1), a positive regulator of tapetal PCD
OsEDM2L	Os08g0502000	LOC_Os08g39250	PCD	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 Mutation of OsEDM2L altered the transcriptomic m6 A landscape, and caused a distinct m6 A modification of the EAT1 transcript leading to dysregulation of its alternative splicing and polyadenylation, followed by suppression of the EAT1 target genes OsAP25 and OsAP37 for tapetal PCD
OsEDM2L	Os08g0502000	LOC_Os08g39250	tapetal programmed cell death	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 The osedm2l knockout mutant showed delayed tapetal programmed cell death (PCD) and defective pollen development
OsEDM2L	Os08g0502000	LOC_Os08g39250	programmed cell death	OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation	 The osedm2l knockout mutant showed delayed tapetal programmed cell death (PCD) and defective pollen development
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	defense	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance	We had previously reported upregulation of the OsACDR1 transcript by a range of environmental stimuli involved in eliciting defense-related pathways
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	defense	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance	Rice plants overexpressing OsACDR1 exhibited spontaneous hypersensitive response (HR)-like lesions on leaves, upregulation of defense-related marker genes and accumulation of phenolic compounds and secondary metabolites (phytoalexins)
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	defense	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance	In contrast, loss-offunction and RNA silenced OsACDR1 rice mutant plants showed downregulation of defense-related marker genes expressions and susceptibility to M
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	disease	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance	These results indicate that OsACDR1 plays an important role in the positive regulation of disease resistance in rice
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	disease	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	salicylic acid	Molecular cloning and mRNA expression analysis of a novel rice ( L.) MAPK kinase kinase, , an ortholog of , reveal its role in defense/stress signalling pathways and development	Using our established two-week-old rice seedling in vitro model system, we show that OsEDR1 has a constitutive expression in seedling leaves and is further up-regulated within 15 min upon wounding by cut, treatment with the global signals jasmonic acid (JA), salicylic acid (SA), ethylene (ethephon, ET), abscisic acid, and hydrogen peroxide
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	ja	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis	ACC treatment was associated with decreased SA and JA biosynthesis in OsEDR1-KO plants
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	ja	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis	In contrast, aminoethoxyvinylglycine, the inhibitor of ethylene biosynthesis, promoted expression of SA and JA synthesis-related genes in OsEDR1-KO plants
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	sa	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis	ACC treatment was associated with decreased SA and JA biosynthesis in OsEDR1-KO plants
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	sa	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis	In contrast, aminoethoxyvinylglycine, the inhibitor of ethylene biosynthesis, promoted expression of SA and JA synthesis-related genes in OsEDR1-KO plants
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	jasmonic acid	Molecular cloning and mRNA expression analysis of a novel rice ( L.) MAPK kinase kinase, , an ortholog of , reveal its role in defense/stress signalling pathways and development	Using our established two-week-old rice seedling in vitro model system, we show that OsEDR1 has a constitutive expression in seedling leaves and is further up-regulated within 15 min upon wounding by cut, treatment with the global signals jasmonic acid (JA), salicylic acid (SA), ethylene (ethephon, ET), abscisic acid, and hydrogen peroxide
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	cell death	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance	Rice Oryza sativa accelerated cell death and resistance 1 (OsACDR1) encodes a putative Raf-like mitogen-activated protein kinase kinase kinase (MAPKKK)
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	cell death	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	reproductive	Molecular cloning and mRNA expression analysis of a novel rice ( L.) MAPK kinase kinase, , an ortholog of , reveal its role in defense/stress signalling pathways and development	Finally, OsEDR1 expression varied significantly in vegetative and reproductive tissues
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	ethylene	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis	OsEDR1-KO plants also showed suppressed production of ethylene
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	ethylene	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis	Knockout of OsEDR1 suppressed the ACC synthase (ACS) gene family, which encodes the rate-limiting enzymes of ethylene biosynthesis by catalysing the formation of ACC
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	ethylene	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis	In contrast, aminoethoxyvinylglycine, the inhibitor of ethylene biosynthesis, promoted expression of SA and JA synthesis-related genes in OsEDR1-KO plants
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	ethylene	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis	In the rice-Xoo interaction, OsEDR1 transcriptionally promotes the synthesis of ethylene that, in turn, suppresses SA- and JA-associated defence signalling
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	ethylene	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	disease resistance	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance	These results indicate that OsACDR1 plays an important role in the positive regulation of disease resistance in rice
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	disease resistance	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	temperature	Molecular cloning and mRNA expression analysis of a novel rice ( L.) MAPK kinase kinase, , an ortholog of , reveal its role in defense/stress signalling pathways and development	Furthermore, using an in vivo system we also show that OsEDR1 responds to changes in temperature and environmental pollutants-ozone and sulfur dioxide
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	seedling	Molecular cloning and mRNA expression analysis of a novel rice ( L.) MAPK kinase kinase, , an ortholog of , reveal its role in defense/stress signalling pathways and development	Using our established two-week-old rice seedling in vitro model system, we show that OsEDR1 has a constitutive expression in seedling leaves and is further up-regulated within 15 min upon wounding by cut, treatment with the global signals jasmonic acid (JA), salicylic acid (SA), ethylene (ethephon, ET), abscisic acid, and hydrogen peroxide
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	defense	Molecular cloning and mRNA expression analysis of a novel rice ( L.) MAPK kinase kinase, , an ortholog of , reveal its role in defense/stress signalling pathways and development	These results suggest a role for OsEDR1 in defense/stress signalling pathways and development
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	ethylene	Molecular cloning and mRNA expression analysis of a novel rice ( L.) MAPK kinase kinase, , an ortholog of , reveal its role in defense/stress signalling pathways and development	Using our established two-week-old rice seedling in vitro model system, we show that OsEDR1 has a constitutive expression in seedling leaves and is further up-regulated within 15 min upon wounding by cut, treatment with the global signals jasmonic acid (JA), salicylic acid (SA), ethylene (ethephon, ET), abscisic acid, and hydrogen peroxide
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	jasmonic	Molecular cloning and mRNA expression analysis of a novel rice ( L.) MAPK kinase kinase, , an ortholog of , reveal its role in defense/stress signalling pathways and development	Using our established two-week-old rice seedling in vitro model system, we show that OsEDR1 has a constitutive expression in seedling leaves and is further up-regulated within 15 min upon wounding by cut, treatment with the global signals jasmonic acid (JA), salicylic acid (SA), ethylene (ethephon, ET), abscisic acid, and hydrogen peroxide
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	vegetative	Molecular cloning and mRNA expression analysis of a novel rice ( L.) MAPK kinase kinase, , an ortholog of , reveal its role in defense/stress signalling pathways and development	Finally, OsEDR1 expression varied significantly in vegetative and reproductive tissues
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	leaf	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	The spl3 mutant was found to be insensitive to abscisic acid (ABA), showing normal root growth in ABA-containing media and delayed leaf yellowing during dark-induced and natural senescence
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	root	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	The spl3 mutant was found to be insensitive to abscisic acid (ABA), showing normal root growth in ABA-containing media and delayed leaf yellowing during dark-induced and natural senescence
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	growth	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	The spl3 mutant was found to be insensitive to abscisic acid (ABA), showing normal root growth in ABA-containing media and delayed leaf yellowing during dark-induced and natural senescence
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	seedling	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	By contrast, in spl3 mutants grown under continuous light, severe cell death lesions formed in developing leaves, even at the seedling stage
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	map-based cloning	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	By map-based cloning and complementation, it was shown that a 1-bp deletion in the first exon of Oryza sativa Mitogen-Activated Protein Kinase Kinase Kinase1 (OsMAPKKK1)/OsEDR1/OsACDR1 causes the spl3 mutant phenotype
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	cell death	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	By contrast, in spl3 mutants grown under continuous light, severe cell death lesions formed in developing leaves, even at the seedling stage
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	senescence	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	The spl3 mutant was found to be insensitive to abscisic acid (ABA), showing normal root growth in ABA-containing media and delayed leaf yellowing during dark-induced and natural senescence
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	abscisic acid	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	The spl3 mutant was found to be insensitive to abscisic acid (ABA), showing normal root growth in ABA-containing media and delayed leaf yellowing during dark-induced and natural senescence
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	Kinase	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	By map-based cloning and complementation, it was shown that a 1-bp deletion in the first exon of Oryza sativa Mitogen-Activated Protein Kinase Kinase Kinase1 (OsMAPKKK1)/OsEDR1/OsACDR1 causes the spl3 mutant phenotype
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	leaf senescence	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and  delays leaf senescence in rice	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and  delays leaf senescence in rice
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	ABA	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and  delays leaf senescence in rice	Furthermore, the spl3 mutant had lower transcript levels and activities of catalases, which scavenge hydrogen peroxide, probably due to impairment of ABA-responsive signalling
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	lesion	Mutation of SPOTTED LEAF3 (SPL3) impairs abscisic acid-responsive signalling and  delays leaf senescence in rice	Finally, a possible molecular mechanism of lesion formation in the mature leaves of spl3 mutant is discussed
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	disease	Genetic analysis and identification of candidate genes for two spotted-leaf mutants (spl101 and spl102) in rice.	Here, two newly identified alleles of OsEDR1 will be benefit for further understanding the molecular mechanisms of the OsEDR1 gene in disease resistance, and will be helpful for enriching the rice germplasm resources
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	disease resistance	Genetic analysis and identification of candidate genes for two spotted-leaf mutants (spl101 and spl102) in rice.	Here, two newly identified alleles of OsEDR1 will be benefit for further understanding the molecular mechanisms of the OsEDR1 gene in disease resistance, and will be helpful for enriching the rice germplasm resources
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	resistance	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	disease	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	disease resistance	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	Kinase	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance
OsEDR1|OsACDR1|OsMAPKKK1|SPL3	Os03g0160100	LOC_Os03g06410	kinase	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance
OsEDS1	Os09g0392100	LOC_Os09g22450	 ja 	Protein elicitor PemG1 from Magnaporthe grisea induces systemic acquired resistance (SAR) in plants	In rice, PemG1 induced overexpressions of the SA signal-related genes (OsEDS1, OsPAL1, and OsNH1) but not the JA pathway-related genes (OsLOX2 and OsAOS2)
OsEDS1	Os09g0392100	LOC_Os09g22450	 sa 	Protein elicitor PemG1 from Magnaporthe grisea induces systemic acquired resistance (SAR) in plants	In rice, PemG1 induced overexpressions of the SA signal-related genes (OsEDS1, OsPAL1, and OsNH1) but not the JA pathway-related genes (OsLOX2 and OsAOS2)
OsEDS1	Os09g0392100	LOC_Os09g22450	resistance	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 oryzicola (Xoc), suggesting the positive role of OsEDS1 in regulating rice disease resistance
OsEDS1	Os09g0392100	LOC_Os09g22450	resistance	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Firstly, OsEDS1 modulates the rice-bacteria interactions involving in jasmonic acid (JA) signaling pathway, while AtEDS1 regulates Arabidopsis disease resistance against biotrophic pathogens depending on salicylic acid (SA) signaling pathway
OsEDS1	Os09g0392100	LOC_Os09g22450	resistance	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Finally, OsEDS1 is not required for R gene mediated resistance, while AtEDS1 is required for disease resistance mediated by TIR-NB-LRR class of R proteins
OsEDS1	Os09g0392100	LOC_Os09g22450	disease	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 oryzicola (Xoc), suggesting the positive role of OsEDS1 in regulating rice disease resistance
OsEDS1	Os09g0392100	LOC_Os09g22450	disease	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Firstly, OsEDS1 modulates the rice-bacteria interactions involving in jasmonic acid (JA) signaling pathway, while AtEDS1 regulates Arabidopsis disease resistance against biotrophic pathogens depending on salicylic acid (SA) signaling pathway
OsEDS1	Os09g0392100	LOC_Os09g22450	disease	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Finally, OsEDS1 is not required for R gene mediated resistance, while AtEDS1 is required for disease resistance mediated by TIR-NB-LRR class of R proteins
OsEDS1	Os09g0392100	LOC_Os09g22450	salicylic acid	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Firstly, OsEDS1 modulates the rice-bacteria interactions involving in jasmonic acid (JA) signaling pathway, while AtEDS1 regulates Arabidopsis disease resistance against biotrophic pathogens depending on salicylic acid (SA) signaling pathway
OsEDS1	Os09g0392100	LOC_Os09g22450	disease resistance	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 oryzicola (Xoc), suggesting the positive role of OsEDS1 in regulating rice disease resistance
OsEDS1	Os09g0392100	LOC_Os09g22450	disease resistance	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Firstly, OsEDS1 modulates the rice-bacteria interactions involving in jasmonic acid (JA) signaling pathway, while AtEDS1 regulates Arabidopsis disease resistance against biotrophic pathogens depending on salicylic acid (SA) signaling pathway
OsEDS1	Os09g0392100	LOC_Os09g22450	disease resistance	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Finally, OsEDS1 is not required for R gene mediated resistance, while AtEDS1 is required for disease resistance mediated by TIR-NB-LRR class of R proteins
OsEDS1	Os09g0392100	LOC_Os09g22450	R protein	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Finally, OsEDS1 is not required for R gene mediated resistance, while AtEDS1 is required for disease resistance mediated by TIR-NB-LRR class of R proteins
OsEDS1	Os09g0392100	LOC_Os09g22450	jasmonic	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.
OsEDS1	Os09g0392100	LOC_Os09g22450	jasmonic	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Firstly, OsEDS1 modulates the rice-bacteria interactions involving in jasmonic acid (JA) signaling pathway, while AtEDS1 regulates Arabidopsis disease resistance against biotrophic pathogens depending on salicylic acid (SA) signaling pathway
OsEDS1	Os09g0392100	LOC_Os09g22450	jasmonic acid	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.
OsEDS1	Os09g0392100	LOC_Os09g22450	jasmonic acid	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Firstly, OsEDS1 modulates the rice-bacteria interactions involving in jasmonic acid (JA) signaling pathway, while AtEDS1 regulates Arabidopsis disease resistance against biotrophic pathogens depending on salicylic acid (SA) signaling pathway
OsEDS1	Os09g0392100	LOC_Os09g22450	 xoo 	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Secondly, introducing AtEDS1 could reduce oseds1 mutant susceptibility to Xoo rather than to Xoc
OsEDS1	Os09g0392100	LOC_Os09g22450	 ja 	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Thirdly, exogenous application of JA and SA cannot complement the susceptible phenotype of the oseds1 mutant, while exogenous application of SA is capable of complementing the susceptible phenotype of the ateds1 mutant
OsEDS1	Os09g0392100	LOC_Os09g22450	JA	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Thirdly, exogenous application of JA and SA cannot complement the susceptible phenotype of the oseds1 mutant, while exogenous application of SA is capable of complementing the susceptible phenotype of the ateds1 mutant
OsEDS1	Os09g0392100	LOC_Os09g22450	 sa 	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Thirdly, exogenous application of JA and SA cannot complement the susceptible phenotype of the oseds1 mutant, while exogenous application of SA is capable of complementing the susceptible phenotype of the ateds1 mutant
OsEDS1	Os09g0392100	LOC_Os09g22450	SA	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	 Thirdly, exogenous application of JA and SA cannot complement the susceptible phenotype of the oseds1 mutant, while exogenous application of SA is capable of complementing the susceptible phenotype of the ateds1 mutant
OsEDS1	Os09g0392100	LOC_Os09g22450	heat stress	ENHANCED DISEASE SUSCEPTIBILITY 1 promotes hydrogen peroxide scavenging to enhance rice thermotolerance.	 The loss-of-function mutation in OsEDS1 causes increased sensitivity to heat stress, whereas overexpression of OsEDS1 enhances thermotolerance
OsEDS1	Os09g0392100	LOC_Os09g22450	Heat Stress	ENHANCED DISEASE SUSCEPTIBILITY 1 promotes hydrogen peroxide scavenging to enhance rice thermotolerance.	 The loss-of-function mutation in OsEDS1 causes increased sensitivity to heat stress, whereas overexpression of OsEDS1 enhances thermotolerance
OsEDS1	Os09g0392100	LOC_Os09g22450	thermotolerance	ENHANCED DISEASE SUSCEPTIBILITY 1 promotes hydrogen peroxide scavenging to enhance rice thermotolerance.	 The loss-of-function mutation in OsEDS1 causes increased sensitivity to heat stress, whereas overexpression of OsEDS1 enhances thermotolerance
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	grain weight	OsEF3, a homologous gene of Arabidopsis ELF3, has pleiotropic effects in rice	OsEF3 may affect root development and kilo-grain weight by delaying cell division or cell elongation
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	root	OsEF3, a homologous gene of Arabidopsis ELF3, has pleiotropic effects in rice	OsEF3 may affect root development and kilo-grain weight by delaying cell division or cell elongation
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	heading date	OsEF3, a homologous gene of Arabidopsis ELF3, has pleiotropic effects in rice	OsEF3 regulates heading date by influencing the BVG stage and does not affect photoperiodic sensitivity, which suggests that the OsEF3 gene may be involved in an autonomous pathway in rice
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	grain	OsEF3, a homologous gene of Arabidopsis ELF3, has pleiotropic effects in rice	OsEF3 may affect root development and kilo-grain weight by delaying cell division or cell elongation
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	root development	OsEF3, a homologous gene of Arabidopsis ELF3, has pleiotropic effects in rice	OsEF3 may affect root development and kilo-grain weight by delaying cell division or cell elongation
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	cell division	OsEF3, a homologous gene of Arabidopsis ELF3, has pleiotropic effects in rice	OsEF3 may affect root development and kilo-grain weight by delaying cell division or cell elongation
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	cell elongation	OsEF3, a homologous gene of Arabidopsis ELF3, has pleiotropic effects in rice	OsEF3 may affect root development and kilo-grain weight by delaying cell division or cell elongation
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	immunity	OsELF3-2, an ortholog of Arabidopsis ELF3, interacts with the E3 ligase APIP6 and negatively regulates immunity against Magnaporthe oryzae in rice	Functional analysis shows that OsELF3-2 negatively regulates immunity against M. oryzae in rice.
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	blast resistance	OsELF3-2, an ortholog of Arabidopsis ELF3, interacts with the E3 ligase APIP6 and negatively regulates immunity against Magnaporthe oryzae in rice	All together, these results demonstrate that OsELF3-2 negatively regulates blast resistance in rice
OsEF3|OsELF3-2|OsELF3.2	Os01g0566100|Os01g0566050	LOC_Os01g38530	resistance	OsELF3-2, an ortholog of Arabidopsis ELF3, interacts with the E3 ligase APIP6 and negatively regulates immunity against Magnaporthe oryzae in rice	All together, these results demonstrate that OsELF3-2 negatively regulates blast resistance in rice
OsEFH1	Os03g0812800	LOC_Os03g59790	grain	Rice miR1432 Fine-Tunes the Balance of Yield and Blast Disease Resistance via Different Modules.	 Overexpression of OsEFH1 leads to enhanced rice resistance but decreased grain yield
OsEFH1	Os03g0812800	LOC_Os03g59790	resistance	Rice miR1432 Fine-Tunes the Balance of Yield and Blast Disease Resistance via Different Modules.	 Overexpression of OsEFH1 leads to enhanced rice resistance but decreased grain yield
OsEFH1	Os03g0812800	LOC_Os03g59790	grain yield	Rice miR1432 Fine-Tunes the Balance of Yield and Blast Disease Resistance via Different Modules.	 Overexpression of OsEFH1 leads to enhanced rice resistance but decreased grain yield
OsEFH1	Os03g0812800	LOC_Os03g59790	yield	Rice miR1432 Fine-Tunes the Balance of Yield and Blast Disease Resistance via Different Modules.	 Overexpression of OsEFH1 leads to enhanced rice resistance but decreased grain yield
OsEFH1	Os03g0812800	LOC_Os03g59790	immunity	Rice miR1432 Fine-Tunes the Balance of Yield and Blast Disease Resistance via Different Modules.	 Consistently, blocking miR1432 or overexpression of OsEFH1 improves chitin-triggered immunity responses
OsEGL1	Os05g0375400	LOC_Os05g31140	glucanase	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings
OsEGL1	Os05g0375400	LOC_Os05g31140	wounding	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings
OsEGL1	Os05g0375400	LOC_Os05g31140	methyl jasmonate	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings
OsEGL1	Os05g0375400	LOC_Os05g31140	seedling	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings
OsEGL1	Os05g0375400	LOC_Os05g31140	silicon-dependent strengthening of rice cell wall	The matrix polysaccharide (1;3,1;4)-beat-D-glucan is involved in silicon-dependent strengthening of rice cell wall	The matrix polysaccharide (1;3,1;4)-beat-D-glucan is involved in silicon-dependent strengthening of rice cell wall
OsEGL1	Os05g0375400	LOC_Os05g31140	silicon	The matrix polysaccharide (1;3,1;4)-beat-D-glucan is involved in silicon-dependent strengthening of rice cell wall	The matrix polysaccharide (1;3,1;4)-beta-D-glucan is involved in silicon-dependent strengthening of rice cell wall
OsEGL1	Os05g0375400	LOC_Os05g31140	cell wall	The matrix polysaccharide (1;3,1;4)-beat-D-glucan is involved in silicon-dependent strengthening of rice cell wall	The matrix polysaccharide (1;3,1;4)-beta-D-glucan is involved in silicon-dependent strengthening of rice cell wall
OsEGL1	Os05g0375400	LOC_Os05g31140	glucanase	The matrix polysaccharide (1;3,1;4)-beta-D-glucan is involved in silicon-dependent strengthening of rice cell wall	Here, we present an analysis of the correlative action of Si and MLG on the mechanical properties of leaf blades using a transgenic rice line in which the MLG level was reduced by overexpressing EGL1, which encodes (1;3,1;4)-beta-D-glucanase.
OsEGL2	Os01g0942300	LOC_Os01g71474	panicle	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings	Little or no expression of the OsEGL2 gene was observed in all tissues or treatments tested, but database and RT-PCR analysis indicated it is expressed in ripening panicle
OsEGL2	Os01g0942300	LOC_Os01g71474	cellulose	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings	Purified OsEGL1 and OsEGL2 proteins hydrolyzed (1,3;1,4)-beta-glucans, but not (1,3;1,6)-beta-linked or (1,3)-beta-linked glucopolysaccharides nor carboxymethyl cellulose, similar to previously characterized grass endo-(1,3;1,4)-beta-glucanases
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	fertility	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	Furthermore, the pollen that developed was completely sterile, which was correlated with the altered expression of two Rf (fertility restorer)-like genes that encode pentatricopeptide repeat-containing proteins OsPPR676 and OsPPR920, translational initiation factors OseIF3e and OseIF3h, and the heat shock protein OsHSP82
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	pollen	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	Furthermore, the pollen that developed was completely sterile, which was correlated with the altered expression of two Rf (fertility restorer)-like genes that encode pentatricopeptide repeat-containing proteins OsPPR676 and OsPPR920, translational initiation factors OseIF3e and OseIF3h, and the heat shock protein OsHSP82
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	sterile	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion	Furthermore, the pollen that developed was completely sterile, which was correlated with the altered expression of two Rf (fertility restorer)-like genes that encode pentatricopeptide repeat-containing proteins OsPPR676 and OsPPR920, translational initiation factors OseIF3e and OseIF3h, and the heat shock protein OsHSP82
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	growth	The Rice Eukaryotic Translation Initiation Factor 3 Subunit e (OseIF3e) Influences Organ Size and Pollen Maturation.	These results suggested although OseIF3e is not a &quot;functional core&quot; subunit of eIF3, it still plays crucial roles in rice growth and development, in combination with other factors
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	pollen	The Rice Eukaryotic Translation Initiation Factor 3 Subunit e (OseIF3e) Influences Organ Size and Pollen Maturation.	Repression of OseIF3e led to defects in pollen maturation but did not affect pollen mitosis
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	pollen	The Rice Eukaryotic Translation Initiation Factor 3 Subunit e (OseIF3e) Influences Organ Size and Pollen Maturation.	We proposed a pathway by which OseIF3e influence organ size and pollen maturation in rice, providing an opportunity to optimize plant architecture for crop breeding
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	architecture	The Rice Eukaryotic Translation Initiation Factor 3 Subunit e (OseIF3e) Influences Organ Size and Pollen Maturation.	We proposed a pathway by which OseIF3e influence organ size and pollen maturation in rice, providing an opportunity to optimize plant architecture for crop breeding
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	breeding	The Rice Eukaryotic Translation Initiation Factor 3 Subunit e (OseIF3e) Influences Organ Size and Pollen Maturation.	We proposed a pathway by which OseIF3e influence organ size and pollen maturation in rice, providing an opportunity to optimize plant architecture for crop breeding
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	mitosis	The Rice Eukaryotic Translation Initiation Factor 3 Subunit e (OseIF3e) Influences Organ Size and Pollen Maturation.	Repression of OseIF3e led to defects in pollen maturation but did not affect pollen mitosis
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	organ size	The Rice Eukaryotic Translation Initiation Factor 3 Subunit e (OseIF3e) Influences Organ Size and Pollen Maturation.	We proposed a pathway by which OseIF3e influence organ size and pollen maturation in rice, providing an opportunity to optimize plant architecture for crop breeding
OseIF3e|EIF3E	Os07g0222300	LOC_Os07g12110	plant architecture	The Rice Eukaryotic Translation Initiation Factor 3 Subunit e (OseIF3e) Influences Organ Size and Pollen Maturation.	We proposed a pathway by which OseIF3e influence organ size and pollen maturation in rice, providing an opportunity to optimize plant architecture for crop breeding
OseIF3f	Os05g0104800	LOC_Os05g01450	root	The Rice Eukaryotic Translation Initiation Factor 3 Subunit f (OseIF3f) Is Involved in Microgametogenesis.	Subcellular localization analysis showed that OseIF3f was localized to the cytosol and the endoplasmic reticulum in rice root cells
OseIF3f	Os05g0104800	LOC_Os05g01450	pollen	The Rice Eukaryotic Translation Initiation Factor 3 Subunit f (OseIF3f) Is Involved in Microgametogenesis.	The OseIF3f-RNAi lines grew normally at the vegetative stage but displayed a large reduction in seed production and pollen viability, which is associated with the down-regulation of OseIF3f
OseIF3f	Os05g0104800	LOC_Os05g01450	seed	The Rice Eukaryotic Translation Initiation Factor 3 Subunit f (OseIF3f) Is Involved in Microgametogenesis.	The OseIF3f-RNAi lines grew normally at the vegetative stage but displayed a large reduction in seed production and pollen viability, which is associated with the down-regulation of OseIF3f
OseIF3f	Os05g0104800	LOC_Os05g01450	vegetative	The Rice Eukaryotic Translation Initiation Factor 3 Subunit f (OseIF3f) Is Involved in Microgametogenesis.	The OseIF3f-RNAi lines grew normally at the vegetative stage but displayed a large reduction in seed production and pollen viability, which is associated with the down-regulation of OseIF3f
OseIF3h	None	None	growth	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OseIF3h	None	None	growth	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
OseIF3h	None	None	development	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OseIF3h	None	None	development	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
OseIF3h	None	None	pollen	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OseIF3h	None	None	pollen	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
OseIF3h	None	None	plant growth	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OseIF3h	None	None	plant growth	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
OseIF3h	None	None	pollen development	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OseIF3h	None	None	pollen development	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	transcription factor	Involvement of two rice ETHYLENE INSENSITIVE3-LIKE genes in wound signaling	In Arabidopsis, ETHYLENE INSENSITIVE3 (EIN3), which is an essential transcription factor for ethylene signaling, is regulated at the post-transcriptional level, while transcriptional regulation of EIN3 or EIN3-LIKE (EIL) genes has not been well documented
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice	Furthermore, the expression of two genes for ethylene signal transduction, ETR2 and EIN3, increased in these RNAi transgenic plants, whereas the expression of ERF3 was suppressed
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	ETHYLENE INSENSITIVE3 (EIN3) is a transcription factor involved in the ethylene signal transduction pathway in Arabidopsis
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	To gain a better understanding of the ethylene signal transduction pathway in rice, six EIN3-like genes (designated OsEIL1-6) were identified
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	primary root	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	The transgenic rice plants with overexpression of OsEIL1 exhibit short root, coiled primary root and slightly short shoot phenotype and elevated response to exogenous ethylene
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	Involvement of two rice ETHYLENE INSENSITIVE3-LIKE genes in wound signaling	In Arabidopsis, ETHYLENE INSENSITIVE3 (EIN3), which is an essential transcription factor for ethylene signaling, is regulated at the post-transcriptional level, while transcriptional regulation of EIN3 or EIN3-LIKE (EIL) genes has not been well documented
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	transcription factor	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	ETHYLENE INSENSITIVE3 (EIN3) is a transcription factor involved in the ethylene signal transduction pathway in Arabidopsis
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	shoot	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	The transgenic rice plants with overexpression of OsEIL1 exhibit short root, coiled primary root and slightly short shoot phenotype and elevated response to exogenous ethylene
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	root	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	The transgenic rice plants with overexpression of OsEIL1 exhibit short root, coiled primary root and slightly short shoot phenotype and elevated response to exogenous ethylene
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	The transgenic rice plants with overexpression of OsEIL1 exhibit short root, coiled primary root and slightly short shoot phenotype and elevated response to exogenous ethylene
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	OsEBP89, an ethylene responsive element binding protein (EREBP) and OsACO1, an ACC (1-aminocyclopropane-1-carboxylic acid) oxidase gene were enhanced in the OsEIL1 overexpressing transgenic plants
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component	These results indicate that OsEIL1 is involved in ethylene signal transduction pathway and acts as a positive regulator of ethylene response in rice
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	resistance	Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.	Ethylene signaling components OsEIN2 and the downstream transcription factor OsEIL1 positively regulated disease resistance
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	transcription factor	Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.	Ethylene signaling components OsEIN2 and the downstream transcription factor OsEIL1 positively regulated disease resistance
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.	Ethylene signaling components OsEIN2 and the downstream transcription factor OsEIL1 positively regulated disease resistance
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	disease	Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.	Ethylene signaling components OsEIN2 and the downstream transcription factor OsEIL1 positively regulated disease resistance
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	disease resistance	Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.	Ethylene signaling components OsEIN2 and the downstream transcription factor OsEIL1 positively regulated disease resistance
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	root	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	root	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	 Here, we report that the transcriptional activation of OsEIL1 on the expression of YUC8/REIN7 and indole-3-pyruvic acid (IPA)-dependent auxin biosynthesis is required for ethylene-inhibited root elongation
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	seedling	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	auxin	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	auxin	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	 Here, we report that the transcriptional activation of OsEIL1 on the expression of YUC8/REIN7 and indole-3-pyruvic acid (IPA)-dependent auxin biosynthesis is required for ethylene-inhibited root elongation
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	root elongation	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	root elongation	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	 Here, we report that the transcriptional activation of OsEIL1 on the expression of YUC8/REIN7 and indole-3-pyruvic acid (IPA)-dependent auxin biosynthesis is required for ethylene-inhibited root elongation
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	auxin biosynthesis	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	auxin biosynthesis	The activation of OsEIL1 on YUC8M transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	 Here, we report that the transcriptional activation of OsEIL1 on the expression of YUC8/REIN7 and indole-3-pyruvic acid (IPA)-dependent auxin biosynthesis is required for ethylene-inhibited root elongation
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	root	OsEIL1 protects rice growth under NH(4) (+) nutrition by regulating OsVTC1-3-dependent N-glycosylation and root NH(4) (+) efflux.	OsEIL1 protects rice growth under NH(4) (+) nutrition by regulating OsVTC1-3-dependent N-glycosylation and root NH(4) (+) efflux.
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	root	OsEIL1 protects rice growth under NH(4) (+) nutrition by regulating OsVTC1-3-dependent N-glycosylation and root NH(4) (+) efflux.	 We show that OsEIL1 in rice plays a contrasting role to Arabidopsis-homologous ETHYLENE-INSENSITIVE3 (AtEIN3) and maintains rice growth under NH(4) (+) by stabilizing protein N-glycosylation and reducing root NH(4) (+) efflux
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	root	OsEIL1 protects rice growth under NH(4) (+) nutrition by regulating OsVTC1-3-dependent N-glycosylation and root NH(4) (+) efflux.	 Our work demonstrates an important link between excessive root NH(4) (+) efflux and OsVTC1-3-mediated protein N-glycosylation in rice grown under NH(4) (+) nutrition and identifies OsEIL1 as a direct genetic regulator of OsVTC1-3 expression
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	growth	OsEIL1 protects rice growth under NH(4) (+) nutrition by regulating OsVTC1-3-dependent N-glycosylation and root NH(4) (+) efflux.	OsEIL1 protects rice growth under NH(4) (+) nutrition by regulating OsVTC1-3-dependent N-glycosylation and root NH(4) (+) efflux.
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	growth	OsEIL1 protects rice growth under NH(4) (+) nutrition by regulating OsVTC1-3-dependent N-glycosylation and root NH(4) (+) efflux.	 We show that OsEIL1 in rice plays a contrasting role to Arabidopsis-homologous ETHYLENE-INSENSITIVE3 (AtEIN3) and maintains rice growth under NH(4) (+) by stabilizing protein N-glycosylation and reducing root NH(4) (+) efflux
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	Rice EIL1 interacts with OsIAAs to regulate auxin biosynthesis mediated by the tryptophan aminotransferase MHZ10/OsTAR2 during root ethylene responses.	 The repressors OsIAA21/31 exhibit earlier degradation upon ethylene treatment than the activators OsIAA1/9 in a TIR1/AFB-dependent manner, allowing OsEIL1 activation by activators OsIAA1/9 for OsTAR2 expression and signal amplification
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	resistance	Dual impact of ambient humidity on the virulence of Magnaporthe oryzae and basal resistance in rice.	 Knock out of ethylene signaling genes OsEIL1 and OsEIN2 or exogenous application of 1-methylcyclopropene (ethylene inhibitor) and ethephon (ethylene analogues) eliminated the difference of blast resistance between the 70% and 90% relative humidity conditions, suggesting that the activation of ethylene signaling contributes to humidity-modulated basal resistance against M
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	ethylene	Dual impact of ambient humidity on the virulence of Magnaporthe oryzae and basal resistance in rice.	 Knock out of ethylene signaling genes OsEIL1 and OsEIN2 or exogenous application of 1-methylcyclopropene (ethylene inhibitor) and ethephon (ethylene analogues) eliminated the difference of blast resistance between the 70% and 90% relative humidity conditions, suggesting that the activation of ethylene signaling contributes to humidity-modulated basal resistance against M
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	blast	Dual impact of ambient humidity on the virulence of Magnaporthe oryzae and basal resistance in rice.	 Knock out of ethylene signaling genes OsEIL1 and OsEIN2 or exogenous application of 1-methylcyclopropene (ethylene inhibitor) and ethephon (ethylene analogues) eliminated the difference of blast resistance between the 70% and 90% relative humidity conditions, suggesting that the activation of ethylene signaling contributes to humidity-modulated basal resistance against M
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	blast resistance	Dual impact of ambient humidity on the virulence of Magnaporthe oryzae and basal resistance in rice.	 Knock out of ethylene signaling genes OsEIL1 and OsEIN2 or exogenous application of 1-methylcyclopropene (ethylene inhibitor) and ethephon (ethylene analogues) eliminated the difference of blast resistance between the 70% and 90% relative humidity conditions, suggesting that the activation of ethylene signaling contributes to humidity-modulated basal resistance against M
OsEIL1|MHZ6	Os03g0324300	LOC_Os03g20790	resistance	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens Stål).	 Our results indicated that OsEBF2 can directly interact with OsEIL1 and positively regulate rice resistance to BPH
OsEIL2	Os07g0685700	LOC_Os07g48630	seedling	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	In rice, however, lack of MHZ6/OsEIL1 or OsEIL2 functions improves salt tolerance, whereas the overexpression lines exhibits salt hypersensitivity at seedling stage, indicating that MHZ6/OsEIL1 and OsEIL2 negatively regulate salt tolerance in rice
OsEIL2	Os07g0685700	LOC_Os07g48630	ethylene	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
OsEIL2	Os07g0685700	LOC_Os07g48630	ethylene	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Disruption of MHZ6/OsEIL1 caused ethylene insensitivity mainly in roots, whereas silencing of the closely-related OsEIL2 led to ethylene insensitivity mainly in coleoptiles of etiolated seedlings
OsEIL2	Os07g0685700	LOC_Os07g48630	ethylene	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Together, our study provides insights for functional diversification of MHZ6/OsEIL1 and OsEIL2 in ethylene response and finds a novel mode of ethylene-regulated salt stress response which could be helpful for engineering salt-tolerant crops
OsEIL2	Os07g0685700	LOC_Os07g48630	salt	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
OsEIL2	Os07g0685700	LOC_Os07g48630	salt	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	In rice, however, lack of MHZ6/OsEIL1 or OsEIL2 functions improves salt tolerance, whereas the overexpression lines exhibits salt hypersensitivity at seedling stage, indicating that MHZ6/OsEIL1 and OsEIL2 negatively regulate salt tolerance in rice
OsEIL2	Os07g0685700	LOC_Os07g48630	salt	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Furthermore, this negative regulation by MHZ6/OsEIL1 and OsEIL2 in salt tolerance is likely in part attributable to the direct regulation of OsHKT2;1 expression and Na+ uptake in roots
OsEIL2	Os07g0685700	LOC_Os07g48630	salt	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Together, our study provides insights for functional diversification of MHZ6/OsEIL1 and OsEIL2 in ethylene response and finds a novel mode of ethylene-regulated salt stress response which could be helpful for engineering salt-tolerant crops
OsEIL2	Os07g0685700	LOC_Os07g48630	salt tolerance	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
OsEIL2	Os07g0685700	LOC_Os07g48630	salt tolerance	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	In rice, however, lack of MHZ6/OsEIL1 or OsEIL2 functions improves salt tolerance, whereas the overexpression lines exhibits salt hypersensitivity at seedling stage, indicating that MHZ6/OsEIL1 and OsEIL2 negatively regulate salt tolerance in rice
OsEIL2	Os07g0685700	LOC_Os07g48630	salt tolerance	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Furthermore, this negative regulation by MHZ6/OsEIL1 and OsEIL2 in salt tolerance is likely in part attributable to the direct regulation of OsHKT2;1 expression and Na+ uptake in roots
OsEIL2	Os07g0685700	LOC_Os07g48630	salt stress	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Together, our study provides insights for functional diversification of MHZ6/OsEIL1 and OsEIL2 in ethylene response and finds a novel mode of ethylene-regulated salt stress response which could be helpful for engineering salt-tolerant crops
OsEIL2	Os07g0685700	LOC_Os07g48630	tolerance	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
OsEIL2	Os07g0685700	LOC_Os07g48630	tolerance	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	In rice, however, lack of MHZ6/OsEIL1 or OsEIL2 functions improves salt tolerance, whereas the overexpression lines exhibits salt hypersensitivity at seedling stage, indicating that MHZ6/OsEIL1 and OsEIL2 negatively regulate salt tolerance in rice
OsEIL2	Os07g0685700	LOC_Os07g48630	tolerance	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Furthermore, this negative regulation by MHZ6/OsEIL1 and OsEIL2 in salt tolerance is likely in part attributable to the direct regulation of OsHKT2;1 expression and Na+ uptake in roots
OsEIL2	Os07g0685700	LOC_Os07g48630	stress	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Together, our study provides insights for functional diversification of MHZ6/OsEIL1 and OsEIL2 in ethylene response and finds a novel mode of ethylene-regulated salt stress response which could be helpful for engineering salt-tolerant crops
OsEIL2	Os07g0685700	LOC_Os07g48630	ethylene response	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
OsEIL2	Os07g0685700	LOC_Os07g48630	ethylene response	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Together, our study provides insights for functional diversification of MHZ6/OsEIL1 and OsEIL2 in ethylene response and finds a novel mode of ethylene-regulated salt stress response which could be helpful for engineering salt-tolerant crops
OsEIL2	Os07g0685700	LOC_Os07g48630	stress response	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Together, our study provides insights for functional diversification of MHZ6/OsEIL1 and OsEIL2 in ethylene response and finds a novel mode of ethylene-regulated salt stress response which could be helpful for engineering salt-tolerant crops
OsEIL2	Os07g0685700	LOC_Os07g48630	seedlings	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.	Disruption of MHZ6/OsEIL1 caused ethylene insensitivity mainly in roots, whereas silencing of the closely-related OsEIL2 led to ethylene insensitivity mainly in coleoptiles of etiolated seedlings
OsEIL2	Os07g0685700	LOC_Os07g48630	drought	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Transgenic plants of overexpressing OsEIL2 (OsEIL2-OX) show reduced tolerance to salt and drought stress compared with the controls
OsEIL2	Os07g0685700	LOC_Os07g48630	salt	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Transgenic plants of overexpressing OsEIL2 (OsEIL2-OX) show reduced tolerance to salt and drought stress compared with the controls
OsEIL2	Os07g0685700	LOC_Os07g48630	tolerance	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Transgenic plants of overexpressing OsEIL2 (OsEIL2-OX) show reduced tolerance to salt and drought stress compared with the controls
OsEIL2	Os07g0685700	LOC_Os07g48630	abiotic stress	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Taken together, these results revealed a new mechanism of OsEIL2 in abiotic stress responses
OsEIL2	Os07g0685700	LOC_Os07g48630	stress	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Transgenic plants of overexpressing OsEIL2 (OsEIL2-OX) show reduced tolerance to salt and drought stress compared with the controls
OsEIL2	Os07g0685700	LOC_Os07g48630	stress	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Taken together, these results revealed a new mechanism of OsEIL2 in abiotic stress responses
OsEIL2	Os07g0685700	LOC_Os07g48630	biotic stress	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Taken together, these results revealed a new mechanism of OsEIL2 in abiotic stress responses
OsEIL2	Os07g0685700	LOC_Os07g48630	abscisic acid	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	OsEIL2 is a nuclear-localized protein with transactivation activity in the C-terminus (amino acids 344-583) and can be induced by NaCl, polyethylene glycol (PEG), dark, and abscisic acid (ABA) treatment
OsEIL2	Os07g0685700	LOC_Os07g48630	drought stress	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Transgenic plants of overexpressing OsEIL2 (OsEIL2-OX) show reduced tolerance to salt and drought stress compared with the controls
OsEIL2	Os07g0685700	LOC_Os07g48630	drought stress	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Transgenic plants of overexpressing OsEIL2 (OsEIL2-OX) show reduced tolerance to salt and drought stress compared with the controls
OsEIL2	Os07g0685700	LOC_Os07g48630	stress response	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the subunit of polygalacturonase (PG1-like) subfamily gene in rice.	Taken together, these results revealed a new mechanism of OsEIL2 in abiotic stress responses
OsEIN2	Os07g0155600	LOC_Os07g06130	ethylene	ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice	Interestingly, expression of the ACC synthase gene ACS1 and ethylene signalling gene OsEIN2 was up-regulated in the aco1 mutants
OsEIN2	Os07g0155600	LOC_Os07g06130	ethylene	OsEIN2 is a positive component in ethylene signaling in rice	In the OsEIN2 antisense plants, the expression levels of two ethylene-responsive genes, SC129 and SC255, were decreased compared with the wild types
OsEIN2	Os07g0155600	LOC_Os07g06130	ethylene	OsEIN2 is a positive component in ethylene signaling in rice	These results suggest that OsEIN2 is a positive component of the ethylene-signaling pathway in rice, just as AtEIN2 is in Arabidopsis
OsEIN2	Os07g0155600	LOC_Os07g06130	ethylene	OsEIN2 is a positive component in ethylene signaling in rice	OsEIN2 is a positive component in ethylene signaling in rice
OsEIN2	Os07g0155600	LOC_Os07g06130	resistance	Dual impact of ambient humidity on the virulence of Magnaporthe oryzae and basal resistance in rice.	 Knock out of ethylene signaling genes OsEIL1 and OsEIN2 or exogenous application of 1-methylcyclopropene (ethylene inhibitor) and ethephon (ethylene analogues) eliminated the difference of blast resistance between the 70% and 90% relative humidity conditions, suggesting that the activation of ethylene signaling contributes to humidity-modulated basal resistance against M
OsEIN2	Os07g0155600	LOC_Os07g06130	ethylene	Dual impact of ambient humidity on the virulence of Magnaporthe oryzae and basal resistance in rice.	 Knock out of ethylene signaling genes OsEIL1 and OsEIN2 or exogenous application of 1-methylcyclopropene (ethylene inhibitor) and ethephon (ethylene analogues) eliminated the difference of blast resistance between the 70% and 90% relative humidity conditions, suggesting that the activation of ethylene signaling contributes to humidity-modulated basal resistance against M
OsEIN2	Os07g0155600	LOC_Os07g06130	blast	Dual impact of ambient humidity on the virulence of Magnaporthe oryzae and basal resistance in rice.	 Knock out of ethylene signaling genes OsEIL1 and OsEIN2 or exogenous application of 1-methylcyclopropene (ethylene inhibitor) and ethephon (ethylene analogues) eliminated the difference of blast resistance between the 70% and 90% relative humidity conditions, suggesting that the activation of ethylene signaling contributes to humidity-modulated basal resistance against M
OsEIN2	Os07g0155600	LOC_Os07g06130	blast resistance	Dual impact of ambient humidity on the virulence of Magnaporthe oryzae and basal resistance in rice.	 Knock out of ethylene signaling genes OsEIL1 and OsEIN2 or exogenous application of 1-methylcyclopropene (ethylene inhibitor) and ethephon (ethylene analogues) eliminated the difference of blast resistance between the 70% and 90% relative humidity conditions, suggesting that the activation of ethylene signaling contributes to humidity-modulated basal resistance against M
OsELF4a	Os11g0621500	LOC_Os11g40610	flowering time	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 Unlike OsLUX, loss OsELF4a displayed a marginal influence under short-day (SD) condition, but markedly delayed flowering time under long-day (LD) condition
OsELF4a	Os11g0621500	LOC_Os11g40610	flowering	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 OsLUX combined with OsELF4a and OsELF3a or OsELF3b to form two ECs, of which the OsLUX-OsELF3a-OsELF4a was likely the dominant promoter for photoperiodic flowering
OsELF4a	Os11g0621500	LOC_Os11g40610	flowering	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 In addition, OsELF4a was also essential for promoting rice flowering
OsELF4a	Os11g0621500	LOC_Os11g40610	flowering	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 Unlike OsLUX, loss OsELF4a displayed a marginal influence under short-day (SD) condition, but markedly delayed flowering time under long-day (LD) condition
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	ABA	Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1	A fusion gene (Osem-GUS) consisting of the Osem promoter and the bacterial beta-glucuronidase (GUS) gene was constructed and tested in a transient expression system, using protoplasts derived from a suspension-cultured line of rice cells, for activation by ABA and by co-transfection with an expression vector (35S-Osvp1) for the rice VP1 (OSVP1) cDNA
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	ABA	Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1	The expression of Osem-GUS was strongly (40- to 150-fold) activated by externally applied ABA and by over-expression of (OS)VP1
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	drought	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	drought	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	In an effort to identify rice genes responsible for drought tolerance, a drought-responsive gene OsEm1 encoding a group I LEA protein, was chosen for this study
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	drought	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	In this study, we generated OsEm1-overexpressing rice plants to explore the function of OsEm1 under drought conditions
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	drought	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Our findings suggest that OsEm1 is a positive regulator of drought tolerance and is potentially promising for engineering drought tolerance in rice
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	tolerance	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	tolerance	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Overexpression of OsEm1 increases ABA sensitivity and enhances osmotic tolerance in rice
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	tolerance	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Our findings suggest that OsEm1 is a positive regulator of drought tolerance and is potentially promising for engineering drought tolerance in rice
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	abiotic stress	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	OsEm1 was shown at vegetative stages to be responsive to various abiotic stresses, including drought, salt, cold and the hormone ABA
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	ABA	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Overexpression of OsEm1 increases ABA sensitivity and enhances osmotic tolerance in rice
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	vegetative	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	OsEm1 was shown at vegetative stages to be responsive to various abiotic stresses, including drought, salt, cold and the hormone ABA
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	vegetative	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Compared with wild type, the OsEm1-overexpressing rice plants showed enhanced plant survival ratio at the vegetative stage; moreover, over expression of OsEm1 in rice increased the expression of other LEA genes, including RAB16A, RAB16C, RAB21, and LEA3, likely protecting organ integrity against harsh environments
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	drought tolerance	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	drought tolerance	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	In an effort to identify rice genes responsible for drought tolerance, a drought-responsive gene OsEm1 encoding a group I LEA protein, was chosen for this study
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	drought tolerance	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Our findings suggest that OsEm1 is a positive regulator of drought tolerance and is potentially promising for engineering drought tolerance in rice
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	biotic stress	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	OsEm1 was shown at vegetative stages to be responsive to various abiotic stresses, including drought, salt, cold and the hormone ABA
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	ABA	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	OsEm1 was shown at vegetative stages to be responsive to various abiotic stresses, including drought, salt, cold and the hormone ABA
OsEm|EMP1|OsEm1	Os05g0349800	LOC_Os05g28210	ABA	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Overexpression of OsEm1 increases ABA sensitivity and enhances osmotic tolerance in rice
OsEMF2a	Os04g0162100	LOC_Os04g08034	cytokinin	The maternally expressed polycomb group gene OsEMF2a is essential for endosperm cellularization and imprinting in rice	The cell cycle was persistently activated in osemf2a caryopses, which was likely caused by cytokinin overproduction
OsEMF2a	Os04g0162100	LOC_Os04g08034	endosperm	The maternally expressed polycomb group gene OsEMF2a is essential for endosperm cellularization and imprinting in rice	The maternally expressed polycomb group gene OsEMF2a is essential for endosperm cellularization and imprinting in rice
OsEMF2a	Os04g0162100	LOC_Os04g08034	cell cycle	The maternally expressed polycomb group gene OsEMF2a is essential for endosperm cellularization and imprinting in rice	The cell cycle was persistently activated in osemf2a caryopses, which was likely caused by cytokinin overproduction
OsEMF2a	Os04g0162100	LOC_Os04g08034	endosperm cellularization	The maternally expressed polycomb group gene OsEMF2a is essential for endosperm cellularization and imprinting in rice	The maternally expressed polycomb group gene OsEMF2a is essential for endosperm cellularization and imprinting in rice
OsEMF2a	Os04g0162100	LOC_Os04g08034	development	Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice	Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice
OsEMF2a	Os04g0162100	LOC_Os04g08034	endosperm	Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice	Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice
OsEMF2a	Os04g0162100	LOC_Os04g08034	endosperm development	Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice	Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice
OsEMF2b	Os09g0306800	LOC_Os09g13630	flowering time	Expression, imprinting, and evolution of rice homologs of the polycomb group genes	One line with a T-DNA insertion in OsEMF2b displays pleiotropic phenotypes including altered flowering time and abnormal flower organs, suggesting important roles in rice development for this gene
OsEMF2b	Os09g0306800	LOC_Os09g13630	flower	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice	As observed from osvil2, a null mutation of OsEMF2b caused late flowering by increasing OsLFL1 expression and decreasing Ehd1 expression
OsEMF2b	Os09g0306800	LOC_Os09g13630	flower	Expression, imprinting, and evolution of rice homologs of the polycomb group genes	One line with a T-DNA insertion in OsEMF2b displays pleiotropic phenotypes including altered flowering time and abnormal flower organs, suggesting important roles in rice development for this gene
OsEMF2b	Os09g0306800	LOC_Os09g13630	floral meristem determinacy	The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice	The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice
OsEMF2b	Os09g0306800	LOC_Os09g13630	floral meristem	The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice	The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice
OsEMF2b	Os09g0306800	LOC_Os09g13630	floral	The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice	The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice
OsEMF2b	Os09g0306800	LOC_Os09g13630	sterility	The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice	Loss of EMF2B in rice results in complete sterility, and mutant flowers have severe floral organ defects and indeterminacy that resemble loss-of-function mutants in E-function floral organ specification genes.
OsEMF2b	Os09g0306800	LOC_Os09g13630	floral organ	The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice	Loss of EMF2B in rice results in complete sterility, and mutant flowers have severe floral organ defects and indeterminacy that resemble loss-of-function mutants in E-function floral organ specification genes.
OsEMF2b	Os09g0306800	LOC_Os09g13630	pollen	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.
OsEMF2b	Os09g0306800	LOC_Os09g13630	pollen	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Overall, our work suggests that OsEMF2b plays an essential role during post-meiotic anther and pollen development
OsEMF2b	Os09g0306800	LOC_Os09g13630	anther	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.
OsEMF2b	Os09g0306800	LOC_Os09g13630	anther	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Overall, our work suggests that OsEMF2b plays an essential role during post-meiotic anther and pollen development
OsEMF2b	Os09g0306800	LOC_Os09g13630	development	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.
OsEMF2b	Os09g0306800	LOC_Os09g13630	development	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Overall, our work suggests that OsEMF2b plays an essential role during post-meiotic anther and pollen development
OsEMF2b	Os09g0306800	LOC_Os09g13630	floral	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Its biological function in floral organ, flowering time and meristem determinacy have been well-studied, but its role, if only, on male reproduction is still unknown, because null mutants of OsEMF2b barely have anthers
OsEMF2b	Os09g0306800	LOC_Os09g13630	meristem	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Its biological function in floral organ, flowering time and meristem determinacy have been well-studied, but its role, if only, on male reproduction is still unknown, because null mutants of OsEMF2b barely have anthers
OsEMF2b	Os09g0306800	LOC_Os09g13630	floral organ	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Its biological function in floral organ, flowering time and meristem determinacy have been well-studied, but its role, if only, on male reproduction is still unknown, because null mutants of OsEMF2b barely have anthers
OsEMF2b	Os09g0306800	LOC_Os09g13630	nucleus	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	OsEMF2b was highly expressed in tapetum and microspores, and the protein was localized in the nucleus
OsEMF2b	Os09g0306800	LOC_Os09g13630	flowering time	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Its biological function in floral organ, flowering time and meristem determinacy have been well-studied, but its role, if only, on male reproduction is still unknown, because null mutants of OsEMF2b barely have anthers
OsEMF2b	Os09g0306800	LOC_Os09g13630	tapetum	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	OsEMF2b was highly expressed in tapetum and microspores, and the protein was localized in the nucleus
OsEMF2b	Os09g0306800	LOC_Os09g13630	pollen development	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.
OsEMF2b	Os09g0306800	LOC_Os09g13630	pollen development	Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice.	Overall, our work suggests that OsEMF2b plays an essential role during post-meiotic anther and pollen development
OsEMSA1	Os10g0524300	LOC_Os10g38040	pollen	A LysM Domain-Containing Gene OsEMSA1 Involved in Embryo sac Development in Rice (Oryza sativa L.).	Suppression of OsEMSA1 expression resulted in a defective embryo sac with poor differentiation of gametophytic cells, which consequently failed to attract pollen tubes and so reduced the panicle seed-setting rate
OsEMSA1	Os10g0524300	LOC_Os10g38040	panicle	A LysM Domain-Containing Gene OsEMSA1 Involved in Embryo sac Development in Rice (Oryza sativa L.).	Suppression of OsEMSA1 expression resulted in a defective embryo sac with poor differentiation of gametophytic cells, which consequently failed to attract pollen tubes and so reduced the panicle seed-setting rate
OsEMSA1	Os10g0524300	LOC_Os10g38040	development	A LysM Domain-Containing Gene OsEMSA1 Involved in Embryo sac Development in Rice (Oryza sativa L.).	A LysM Domain-Containing Gene OsEMSA1 Involved in Embryo sac Development in Rice (Oryza sativa L.).
OsENOD93-1	Os06g0142350	LOC_Os06g05010	shoot	Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling	Transgenic rice plants over-expressing the OsENOD93-1 gene had increased shoot dry biomass and seed yield
OsENOD93-1	Os06g0142350	LOC_Os06g05010	biomass	Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling	Transgenic rice plants over-expressing the OsENOD93-1 gene had increased shoot dry biomass and seed yield
OsENOD93-1	Os06g0142350	LOC_Os06g05010	root	Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling	This OsENOD93-1 gene was expressed at high levels in roots of wild-type (WT) plants, and its protein product was localized in mitochondria
OsENOD93-1	Os06g0142350	LOC_Os06g05010	vascular bundle	Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling	In situ hybridization revealed that OsENOD93-1 is expressed in vascular bundles, as well as in epidermis and endodermis
OsENOD93-1	Os06g0142350	LOC_Os06g05010	mitochondria	Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling	This OsENOD93-1 gene was expressed at high levels in roots of wild-type (WT) plants, and its protein product was localized in mitochondria
OsENOD93-1	Os06g0142350	LOC_Os06g05010	seed	Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling	Transgenic rice plants over-expressing the OsENOD93-1 gene had increased shoot dry biomass and seed yield
OsENOD93-1	Os06g0142350	LOC_Os06g05010	yield	Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling	Transgenic rice plants over-expressing the OsENOD93-1 gene had increased shoot dry biomass and seed yield
OsENT2	Os07g0557100	LOC_Os07g37100	endosperm	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport	The OsENT2 promoter drove the expression of the beta-glucuronidase reporter gene in the scutellum during germination and in vascular tissues in germinated plants, suggesting a participation of OsENT2 in the retrieval of endosperm-derived nucleosides by the germinating embryo and in the long-distance transport of nucleosides in growing plants, respectively
OsENT2	Os07g0557100	LOC_Os07g37100	resistant	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport	OsENT2-mediated adenosine transport was resistant to the typical inhibitors of mammalian ENTs, nitrobenzylmercaptopurine ribonucleoside, dilazep, and dipyridamole
OsENT2	Os07g0557100	LOC_Os07g37100	growth	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport	Growth analysis of budding yeast (Saccharomyces cerevisiae) cells expressing OsENTs showed that OsENT2 transported adenosine and uridine with high affinity (adenosine, K(m) = 3
OsENT2	Os07g0557100	LOC_Os07g37100	cytokinin	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport	In competition experiments with various cytokinins, adenosine transport by OsENT2 was inhibited by isopentenyladenine riboside (iPR)
OsENT2	Os07g0557100	LOC_Os07g37100	cytokinin	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport	Direct measurements with radiolabeled cytokinins demonstrated that OsENT2 mediated uptake of iPR (K(m) = 32 microm) and trans-zeatin riboside (K(m) = 660 microm), suggesting that OsENT2 participates in iPR transport in planta
OsENT2	Os07g0557100	LOC_Os07g37100	cytokinin	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport
OsENT2	Os07g0557100	LOC_Os07g37100	transporter	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport
OsENT2	Os07g0557100	LOC_Os07g37100	root	Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in rice suggest a function in cytokinin transport	In mature plants, OsENT2 was predominantly expressed in roots
OsEPF1	Os04g0637300	LOC_Os04g54490	stomatal	Homologous genes of epidermal patterning factor regulate stomatal development in rice.	 To understand their possible involvement in stomatal formation, in this study we generated a series of transgenic lines including reporter promoter fusions, down-regulation and overexpression and demonstrated drastic differences in stomatal densities between different genotypes, as elevated expression of OsEPF1 or OsEPF2 greatly reduced stomatal density in rice, whereas ectopic overexpression of either OsEPF1 or OsEPF2 significantly decreased the high stomatal frequency of both mutant lines of epf2 and epf1epf2 Arabidopsis
OsEPF1	Os04g0637300	LOC_Os04g54490	root	Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.	Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.
OsEPF1	Os04g0637300	LOC_Os04g54490	stomatal	Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.	Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.
OsEPF1	Os04g0637300	LOC_Os04g54490	development	Stomatal Development and Gene Expression in Rice Florets.	 We reveal that in the bract-like organs, stomatal development follows the same cell lineage transitions as in rice leaves and demonstrate that the overexpression of the stomatal development regulators OsEPFL9-1 and OsEPF1 leads to dramatic changes in stomatal density in rice floral organs, producing lemma with approximately twice as many stomata (OsEPFL9-1_oe) or lemma where stomata are practically absent (OsEPF1_oe)
OsEPF1	Os04g0637300	LOC_Os04g54490	floral	Stomatal Development and Gene Expression in Rice Florets.	 We reveal that in the bract-like organs, stomatal development follows the same cell lineage transitions as in rice leaves and demonstrate that the overexpression of the stomatal development regulators OsEPFL9-1 and OsEPF1 leads to dramatic changes in stomatal density in rice floral organs, producing lemma with approximately twice as many stomata (OsEPFL9-1_oe) or lemma where stomata are practically absent (OsEPF1_oe)
OsEPF1	Os04g0637300	LOC_Os04g54490	floral	Stomatal Development and Gene Expression in Rice Florets.	 Finally, although we were unable to detect an impact on plant reproduction linked to changes in the density of floral stomata, we report alterations in global gene expression in lines overexpressing OsEPF1 and discuss how our results reflect on the possible role(s) of floral stomata
OsEPF1	Os04g0637300	LOC_Os04g54490	lemma	Stomatal Development and Gene Expression in Rice Florets.	 We reveal that in the bract-like organs, stomatal development follows the same cell lineage transitions as in rice leaves and demonstrate that the overexpression of the stomatal development regulators OsEPFL9-1 and OsEPF1 leads to dramatic changes in stomatal density in rice floral organs, producing lemma with approximately twice as many stomata (OsEPFL9-1_oe) or lemma where stomata are practically absent (OsEPF1_oe)
OsEPF1	Os04g0637300	LOC_Os04g54490	stomatal	Stomatal Development and Gene Expression in Rice Florets.	 We reveal that in the bract-like organs, stomatal development follows the same cell lineage transitions as in rice leaves and demonstrate that the overexpression of the stomatal development regulators OsEPFL9-1 and OsEPF1 leads to dramatic changes in stomatal density in rice floral organs, producing lemma with approximately twice as many stomata (OsEPFL9-1_oe) or lemma where stomata are practically absent (OsEPF1_oe)
OsEPF1	Os04g0637300	LOC_Os04g54490	floral organ	Stomatal Development and Gene Expression in Rice Florets.	 We reveal that in the bract-like organs, stomatal development follows the same cell lineage transitions as in rice leaves and demonstrate that the overexpression of the stomatal development regulators OsEPFL9-1 and OsEPF1 leads to dramatic changes in stomatal density in rice floral organs, producing lemma with approximately twice as many stomata (OsEPFL9-1_oe) or lemma where stomata are practically absent (OsEPF1_oe)
OsEPF1	Os04g0637300	LOC_Os04g54490	stomata	Stomatal Development and Gene Expression in Rice Florets.	 We reveal that in the bract-like organs, stomatal development follows the same cell lineage transitions as in rice leaves and demonstrate that the overexpression of the stomatal development regulators OsEPFL9-1 and OsEPF1 leads to dramatic changes in stomatal density in rice floral organs, producing lemma with approximately twice as many stomata (OsEPFL9-1_oe) or lemma where stomata are practically absent (OsEPF1_oe)
OsEPF1	Os04g0637300	LOC_Os04g54490	stomata	Stomatal Development and Gene Expression in Rice Florets.	 Finally, although we were unable to detect an impact on plant reproduction linked to changes in the density of floral stomata, we report alterations in global gene expression in lines overexpressing OsEPF1 and discuss how our results reflect on the possible role(s) of floral stomata
OsEPF1	Os04g0637300	LOC_Os04g54490	stomatal development	Stomatal Development and Gene Expression in Rice Florets.	 We reveal that in the bract-like organs, stomatal development follows the same cell lineage transitions as in rice leaves and demonstrate that the overexpression of the stomatal development regulators OsEPFL9-1 and OsEPF1 leads to dramatic changes in stomatal density in rice floral organs, producing lemma with approximately twice as many stomata (OsEPFL9-1_oe) or lemma where stomata are practically absent (OsEPF1_oe)
OsEPF1	Os04g0637300	LOC_Os04g54490	stomatal density	Stomatal Development and Gene Expression in Rice Florets.	 We reveal that in the bract-like organs, stomatal development follows the same cell lineage transitions as in rice leaves and demonstrate that the overexpression of the stomatal development regulators OsEPFL9-1 and OsEPF1 leads to dramatic changes in stomatal density in rice floral organs, producing lemma with approximately twice as many stomata (OsEPFL9-1_oe) or lemma where stomata are practically absent (OsEPF1_oe)
OsEPF2	Os04g0457700	LOC_Os04g38470	stomatal	Homologous genes of epidermal patterning factor regulate stomatal development in rice.	To understand their possible involvement in stomatal formation, in this study we generated a series of transgenic lines including reporter promoter fusions, down-regulation and overexpression and demonstrated drastic differences in stomatal densities between different genotypes, as elevated expression of OsEPF1 or OsEPF2 greatly reduced stomatal density in rice, whereas ectopic overexpression of either OsEPF1 or OsEPF2 significantly decreased the high stomatal frequency of both mutant lines of epf2 and epf1epf2 Arabidopsis
OsEPFL2	Os02g0756100	LOC_Os02g51950	development	Small EPIDERMAL PATTERNING FACTOR-LIKE2 peptides regulate awn development in rice.	 OsEPFL2 is strongly expressed in the young panicle, consistent with a role in regulating awn and grain development
OsEPFL2	Os02g0756100	LOC_Os02g51950	grain	Small EPIDERMAL PATTERNING FACTOR-LIKE2 peptides regulate awn development in rice.	 Loss of function of most OsEPF/EPFL genes generated no obvious phenotype alteration, whilst disruption of OsEPFL2 in Kasalath caused a short or no awn phenotype and reduced grain size
OsEPFL2	Os02g0756100	LOC_Os02g51950	grain	Small EPIDERMAL PATTERNING FACTOR-LIKE2 peptides regulate awn development in rice.	 OsEPFL2 is strongly expressed in the young panicle, consistent with a role in regulating awn and grain development
OsEPFL2	Os02g0756100	LOC_Os02g51950	grain size	Small EPIDERMAL PATTERNING FACTOR-LIKE2 peptides regulate awn development in rice.	 Loss of function of most OsEPF/EPFL genes generated no obvious phenotype alteration, whilst disruption of OsEPFL2 in Kasalath caused a short or no awn phenotype and reduced grain size
OsEPFL2	Os02g0756100	LOC_Os02g51950	domestication	Small EPIDERMAL PATTERNING FACTOR-LIKE2 peptides regulate awn development in rice.	 Nucleotide diversity and genetic differentiation analyses suggested that OsEPFL2 was positively selected during the domestication of rice
OsEPFL2	Os02g0756100	LOC_Os02g51950	awn	Small EPIDERMAL PATTERNING FACTOR-LIKE2 peptides regulate awn development in rice.	 Loss of function of most OsEPF/EPFL genes generated no obvious phenotype alteration, whilst disruption of OsEPFL2 in Kasalath caused a short or no awn phenotype and reduced grain size
OsEPFL2	Os02g0756100	LOC_Os02g51950	awn	Small EPIDERMAL PATTERNING FACTOR-LIKE2 peptides regulate awn development in rice.	 OsEPFL2 is strongly expressed in the young panicle, consistent with a role in regulating awn and grain development
OsEPFL6	Os03g0161600	LOC_Os03g06610	spikelet	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL6	Os03g0161600	LOC_Os03g06610	grain	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL6	Os03g0161600	LOC_Os03g06610	panicle	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL6	Os03g0161600	LOC_Os03g06610	grain yield	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL6	Os03g0161600	LOC_Os03g06610	yield	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL6	Os03g0161600	LOC_Os03g06610	architecture	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL6	Os03g0161600	LOC_Os03g06610	panicle architecture	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL7	Os11g0581700	LOC_Os11g37190	spikelet	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL7	Os11g0581700	LOC_Os11g37190	grain	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL7	Os11g0581700	LOC_Os11g37190	panicle	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL7	Os11g0581700	LOC_Os11g37190	grain yield	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL7	Os11g0581700	LOC_Os11g37190	yield	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL7	Os11g0581700	LOC_Os11g37190	architecture	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL7	Os11g0581700	LOC_Os11g37190	panicle architecture	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL8	Os05g0476400	LOC_Os05g39880	spikelet	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Notably, OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 negatively regulate spikelet number per panicle, but OsEPFL8 also controls rice spikelet fertility
OsEPFL8	Os05g0476400	LOC_Os05g39880	fertility	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Notably, OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 negatively regulate spikelet number per panicle, but OsEPFL8 also controls rice spikelet fertility
OsEPFL8	Os05g0476400	LOC_Os05g39880	spikelet number	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Notably, OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 negatively regulate spikelet number per panicle, but OsEPFL8 also controls rice spikelet fertility
OsEPFL9	Os01g0824500	LOC_Os01g60900	leaf	Editing a Stomatal Developmental Gene in Rice with CRISPR/Cpf1.	 We have successfully tested the efficiency of Cpf1 system in rice using OsEPFL9 which is a developmental gene known to regulate the stomatal density in leaf
OsEPFL9	Os01g0824500	LOC_Os01g60900	stomatal	Editing a Stomatal Developmental Gene in Rice with CRISPR/Cpf1.	 We have successfully tested the efficiency of Cpf1 system in rice using OsEPFL9 which is a developmental gene known to regulate the stomatal density in leaf
OsEPFL9	Os01g0824500	LOC_Os01g60900	Kinase	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Here, we report that the EPIDERMAL PATTERNING FACTOR (EPF)/EPF-LIKE (EPFL) small secreted peptide family members OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 synergistically contribute to rice panicle morphogenesis by recognizing the OsER1 receptor and activating the mitogen-activated protein kinase cascade
OsEPFL9	Os01g0824500	LOC_Os01g60900	spikelet	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Notably, OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 negatively regulate spikelet number per panicle, but OsEPFL8 also controls rice spikelet fertility
OsEPFL9	Os01g0824500	LOC_Os01g60900	spikelet	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL9	Os01g0824500	LOC_Os01g60900	grain	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL9	Os01g0824500	LOC_Os01g60900	kinase	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Here, we report that the EPIDERMAL PATTERNING FACTOR (EPF)/EPF-LIKE (EPFL) small secreted peptide family members OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 synergistically contribute to rice panicle morphogenesis by recognizing the OsER1 receptor and activating the mitogen-activated protein kinase cascade
OsEPFL9	Os01g0824500	LOC_Os01g60900	fertility	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Notably, OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 negatively regulate spikelet number per panicle, but OsEPFL8 also controls rice spikelet fertility
OsEPFL9	Os01g0824500	LOC_Os01g60900	panicle	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Here, we report that the EPIDERMAL PATTERNING FACTOR (EPF)/EPF-LIKE (EPFL) small secreted peptide family members OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 synergistically contribute to rice panicle morphogenesis by recognizing the OsER1 receptor and activating the mitogen-activated protein kinase cascade
OsEPFL9	Os01g0824500	LOC_Os01g60900	panicle	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL9	Os01g0824500	LOC_Os01g60900	grain yield	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL9	Os01g0824500	LOC_Os01g60900	yield	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL9	Os01g0824500	LOC_Os01g60900	architecture	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsEPFL9	Os01g0824500	LOC_Os01g60900	spikelet number	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Notably, OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 negatively regulate spikelet number per panicle, but OsEPFL8 also controls rice spikelet fertility
OsEPFL9	Os01g0824500	LOC_Os01g60900	protein kinase	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Here, we report that the EPIDERMAL PATTERNING FACTOR (EPF)/EPF-LIKE (EPFL) small secreted peptide family members OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 synergistically contribute to rice panicle morphogenesis by recognizing the OsER1 receptor and activating the mitogen-activated protein kinase cascade
OsEPFL9	Os01g0824500	LOC_Os01g60900	panicle architecture	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 A osepfl6 osepfl7 osepfl9 triple mutant had significantly enhanced grain yield without affecting spikelet fertility, suggesting that specifically suppressing the OsEPFL6-OsER1, OsEPFL7-OsER1, and OsEPFL9-OsER1 ligand-receptor pairs can optimize rice panicle architecture
OsER1	Os06g0203800	LOC_Os06g10230	growth	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	 Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsER1	Os06g0203800	LOC_Os06g10230	panicle	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	 Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsER1	Os06g0203800	LOC_Os06g10230	cell proliferation	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	 Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsER1	Os06g0203800	LOC_Os06g10230	panicle size	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	 Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsER1	Os06g0203800	LOC_Os06g10230	plant stature	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	 Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsER1	Os06g0203800	LOC_Os06g10230	Kinase	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Here, we report that the EPIDERMAL PATTERNING FACTOR (EPF)/EPF-LIKE (EPFL) small secreted peptide family members OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 synergistically contribute to rice panicle morphogenesis by recognizing the OsER1 receptor and activating the mitogen-activated protein kinase cascade
OsER1	Os06g0203800	LOC_Os06g10230	kinase	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Here, we report that the EPIDERMAL PATTERNING FACTOR (EPF)/EPF-LIKE (EPFL) small secreted peptide family members OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 synergistically contribute to rice panicle morphogenesis by recognizing the OsER1 receptor and activating the mitogen-activated protein kinase cascade
OsER1	Os06g0203800	LOC_Os06g10230	panicle	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Here, we report that the EPIDERMAL PATTERNING FACTOR (EPF)/EPF-LIKE (EPFL) small secreted peptide family members OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 synergistically contribute to rice panicle morphogenesis by recognizing the OsER1 receptor and activating the mitogen-activated protein kinase cascade
OsER1	Os06g0203800	LOC_Os06g10230	protein kinase	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	 Here, we report that the EPIDERMAL PATTERNING FACTOR (EPF)/EPF-LIKE (EPFL) small secreted peptide family members OsEPFL6, OsEPFL7, OsEPFL8, and OsEPFL9 synergistically contribute to rice panicle morphogenesis by recognizing the OsER1 receptor and activating the mitogen-activated protein kinase cascade
OsER2	Os02g0777400	LOC_Os02g53720	growth	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsER2	Os02g0777400	LOC_Os02g53720	panicle	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsER2	Os02g0777400	LOC_Os02g53720	cell proliferation	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsER2	Os02g0777400	LOC_Os02g53720	panicle size	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsER2	Os02g0777400	LOC_Os02g53720	plant stature	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.	Loss-of-function mutants of OsER1 and OsER2 display shortened plant stature and reduced panicle size, suggesting they possibly also functioned in regulating cell proliferation and cell growth in rice
OsERA1	Os01g0737800	LOC_Os01g53600	leaf	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	Here, we show that rice osera1 mutant lines, harboring CRISPR/Cas9-induced frameshift mutations, exhibit similar leaf growth as control plants but increased primary root growth
OsERA1	Os01g0737800	LOC_Os01g53600	root	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice
OsERA1	Os01g0737800	LOC_Os01g53600	root	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	Here, we show that rice osera1 mutant lines, harboring CRISPR/Cas9-induced frameshift mutations, exhibit similar leaf growth as control plants but increased primary root growth
OsERA1	Os01g0737800	LOC_Os01g53600	root	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERA1	Os01g0737800	LOC_Os01g53600	growth	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice
OsERA1	Os01g0737800	LOC_Os01g53600	growth	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	Here, we show that rice osera1 mutant lines, harboring CRISPR/Cas9-induced frameshift mutations, exhibit similar leaf growth as control plants but increased primary root growth
OsERA1	Os01g0737800	LOC_Os01g53600	growth	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERA1	Os01g0737800	LOC_Os01g53600	drought	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice
OsERA1	Os01g0737800	LOC_Os01g53600	drought	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	The osera1 mutant lines also display increased sensitivity to ABA and an enhanced response to drought stress through stomatal regulation
OsERA1	Os01g0737800	LOC_Os01g53600	drought	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERA1	Os01g0737800	LOC_Os01g53600	ABA	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	The osera1 mutant lines also display increased sensitivity to ABA and an enhanced response to drought stress through stomatal regulation
OsERA1	Os01g0737800	LOC_Os01g53600	ABA	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERA1	Os01g0737800	LOC_Os01g53600	stress	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice
OsERA1	Os01g0737800	LOC_Os01g53600	stress	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	The osera1 mutant lines also display increased sensitivity to ABA and an enhanced response to drought stress through stomatal regulation
OsERA1	Os01g0737800	LOC_Os01g53600	stress	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERA1	Os01g0737800	LOC_Os01g53600	stomatal	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	The osera1 mutant lines also display increased sensitivity to ABA and an enhanced response to drought stress through stomatal regulation
OsERA1	Os01g0737800	LOC_Os01g53600	abscisic acid	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice
OsERA1	Os01g0737800	LOC_Os01g53600	ABA	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	The osera1 mutant lines also display increased sensitivity to ABA and an enhanced response to drought stress through stomatal regulation
OsERA1	Os01g0737800	LOC_Os01g53600	ABA	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERA1	Os01g0737800	LOC_Os01g53600	drought stress	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice
OsERA1	Os01g0737800	LOC_Os01g53600	drought stress	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	The osera1 mutant lines also display increased sensitivity to ABA and an enhanced response to drought stress through stomatal regulation
OsERA1	Os01g0737800	LOC_Os01g53600	drought stress	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERA1	Os01g0737800	LOC_Os01g53600	primary root	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice
OsERA1	Os01g0737800	LOC_Os01g53600	primary root	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	Here, we show that rice osera1 mutant lines, harboring CRISPR/Cas9-induced frameshift mutations, exhibit similar leaf growth as control plants but increased primary root growth
OsERA1	Os01g0737800	LOC_Os01g53600	primary root	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERA1	Os01g0737800	LOC_Os01g53600	drought stress	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice
OsERA1	Os01g0737800	LOC_Os01g53600	drought stress	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	The osera1 mutant lines also display increased sensitivity to ABA and an enhanced response to drought stress through stomatal regulation
OsERA1	Os01g0737800	LOC_Os01g53600	drought stress	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERA1	Os01g0737800	LOC_Os01g53600	root growth	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice
OsERA1	Os01g0737800	LOC_Os01g53600	root growth	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	Here, we show that rice osera1 mutant lines, harboring CRISPR/Cas9-induced frameshift mutations, exhibit similar leaf growth as control plants but increased primary root growth
OsERA1	Os01g0737800	LOC_Os01g53600	root growth	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice	These results illustrate that OsERA1 is a negative regulator of primary root growth under nonstressed conditions and also of responses to ABA and drought stress in rice
OsERdj3A	Os03g0293000	LOC_Os03g18200	root	Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants	The expression of OsP58B, OsERdj3A, and OsERdj3B was predominantly up-regulated in roots subjected to ER stress
OsERdj3A	Os03g0293000	LOC_Os03g18200	seed	Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants	Furthermore, OsERdj3A was not expressed in wild-type seeds but was up-regulated in transgenic seeds accumulating human interleukin-7 (hIL-7)
OsERdj7	Os12g0258200	LOC_Os12g15590	seed	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.	Next, to investigate its role during seed maturation, expression of OsERdj7 was specifically downregulated using RNA interference (RNAi) under the control of the endosperm-specific 16<U+2009>kDa prolamin promoter in transgenic rice
OsERdj7	Os12g0258200	LOC_Os12g15590	seed	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.	Due to PDIL2-3 and OsHard3 co-immunoprecipitating with OsERdj7 in rice protoplasts, this result implicates OsERdj7 in the translocation of some seed proteins within the ER lumen and in the degradation of misfolded or unfolded proteins
OsERdj7	Os12g0258200	LOC_Os12g15590	salt	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.	When the microsomal fraction of maturing seeds was treated with alkaline, high salt or detergent compounds, OsERdj7 was solubilized, even in alkaline and high salt environments, indicating that it is not tightly integrated in the ER membrane
OsERdj7	Os12g0258200	LOC_Os12g15590	quality	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.
OsERdj7	Os12g0258200	LOC_Os12g15590	prolamin	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.	Next, to investigate its role during seed maturation, expression of OsERdj7 was specifically downregulated using RNA interference (RNAi) under the control of the endosperm-specific 16<U+2009>kDa prolamin promoter in transgenic rice
OsERdj7	Os12g0258200	LOC_Os12g15590	endosperm	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.
OsERdj7	Os12g0258200	LOC_Os12g15590	ER quality control	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.
OsEREBP1	Os02g0782700	LOC_Os02g54160	transcription factor	BWMK1, a Rice Mitogen-Activated Protein Kinase, Locates in the Nucleus and Mediates Pathogenesis-Related Gene Expression by Activation of a Transcription Factor	Here, we report an MAPK from rice (Oryza sativa), BWMK1, and a transcription factor, OsEREBP1, phosphorylated by the kinase
OsEREBP1	Os02g0782700	LOC_Os02g54160	salt	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	This study revealed that OsEREBP1 transcript level is not significantly affected by salt, ABA or severe cold (5 degrees C) and is only slightly regulated by drought and moderate cold
OsEREBP1	Os02g0782700	LOC_Os02g54160	drought	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	This study revealed that OsEREBP1 transcript level is not significantly affected by salt, ABA or severe cold (5 degrees C) and is only slightly regulated by drought and moderate cold
OsEREBP1	Os02g0782700	LOC_Os02g54160	ethylene	Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice	) phyAphyBphyC mutants lacking any phytochrome and containing the GCC box element, a binding site for rice ethylene-responsive element binding protein 1 (OsEREBP1), in its promoter region
OsEREBP1	Os02g0782700	LOC_Os02g54160	transcription factor	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	Thereby, two transcription factors (TFs), OsEREBP1 and OsEREBP2, belonging to the AP2/ERF family were identified
OsEREBP1	Os02g0782700	LOC_Os02g54160	ABA	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	This study revealed that OsEREBP1 transcript level is not significantly affected by salt, ABA or severe cold (5 degrees C) and is only slightly regulated by drought and moderate cold
OsEREBP1	Os02g0782700	LOC_Os02g54160	submergence	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Comparative analysis of non-transgenic and OsEREBP1 overexpressing genotypes revealed that OsEREBP1 attenuates disease caused by Xoo and confers drought and submergence tolerance in transgenic rice
OsEREBP1	Os02g0782700	LOC_Os02g54160	growth	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Constitutive expression of OsEREBP1 in rice driven by maize ubiquitin promoter did not affect normal plant growth
OsEREBP1	Os02g0782700	LOC_Os02g54160	transcription factor	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
OsEREBP1	Os02g0782700	LOC_Os02g54160	transcription factor	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	A rice AP2/ERF transcription factor, OsEREBP1 is a downstream component of a signal transduction pathway in a specific interaction between rice (Oryza sativa) and its bacterial pathogen, Xoo (Xanthomonas oryzae pv
OsEREBP1	Os02g0782700	LOC_Os02g54160	abiotic stress	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
OsEREBP1	Os02g0782700	LOC_Os02g54160	drought	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Comparative analysis of non-transgenic and OsEREBP1 overexpressing genotypes revealed that OsEREBP1 attenuates disease caused by Xoo and confers drought and submergence tolerance in transgenic rice
OsEREBP1	Os02g0782700	LOC_Os02g54160	jasmonate	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Microarray analysis revealed that over expression of OsEREBP1 caused increased expression of lipid metabolism related genes such as lipase and chloroplastic lipoxygenase as well as several genes related to jasmonate and abscisic acid biosynthesis
OsEREBP1	Os02g0782700	LOC_Os02g54160	jasmonate	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Our results suggest that constitutive expression of OsEREBP1 activates the jasmonate and abscisic acid signalling pathways thereby priming the rice plants for enhanced survival under abiotic or biotic stress conditions
OsEREBP1	Os02g0782700	LOC_Os02g54160	disease	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Comparative analysis of non-transgenic and OsEREBP1 overexpressing genotypes revealed that OsEREBP1 attenuates disease caused by Xoo and confers drought and submergence tolerance in transgenic rice
OsEREBP1	Os02g0782700	LOC_Os02g54160	tolerance	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
OsEREBP1	Os02g0782700	LOC_Os02g54160	tolerance	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Comparative analysis of non-transgenic and OsEREBP1 overexpressing genotypes revealed that OsEREBP1 attenuates disease caused by Xoo and confers drought and submergence tolerance in transgenic rice
OsEREBP1	Os02g0782700	LOC_Os02g54160	tolerance	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	OsEREBP1 is thus, a good candidate gene for engineering plants for multiple stress tolerance
OsEREBP1	Os02g0782700	LOC_Os02g54160	stress	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
OsEREBP1	Os02g0782700	LOC_Os02g54160	stress	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Our results suggest that constitutive expression of OsEREBP1 activates the jasmonate and abscisic acid signalling pathways thereby priming the rice plants for enhanced survival under abiotic or biotic stress conditions
OsEREBP1	Os02g0782700	LOC_Os02g54160	stress	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	OsEREBP1 is thus, a good candidate gene for engineering plants for multiple stress tolerance
OsEREBP1	Os02g0782700	LOC_Os02g54160	xoo	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	A rice AP2/ERF transcription factor, OsEREBP1 is a downstream component of a signal transduction pathway in a specific interaction between rice (Oryza sativa) and its bacterial pathogen, Xoo (Xanthomonas oryzae pv
OsEREBP1	Os02g0782700	LOC_Os02g54160	xoo	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Comparative analysis of non-transgenic and OsEREBP1 overexpressing genotypes revealed that OsEREBP1 attenuates disease caused by Xoo and confers drought and submergence tolerance in transgenic rice
OsEREBP1	Os02g0782700	LOC_Os02g54160	Ubiquitin	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Constitutive expression of OsEREBP1 in rice driven by maize ubiquitin promoter did not affect normal plant growth
OsEREBP1	Os02g0782700	LOC_Os02g54160	submergence tolerance	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Comparative analysis of non-transgenic and OsEREBP1 overexpressing genotypes revealed that OsEREBP1 attenuates disease caused by Xoo and confers drought and submergence tolerance in transgenic rice
OsEREBP1	Os02g0782700	LOC_Os02g54160	abscisic acid	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Microarray analysis revealed that over expression of OsEREBP1 caused increased expression of lipid metabolism related genes such as lipase and chloroplastic lipoxygenase as well as several genes related to jasmonate and abscisic acid biosynthesis
OsEREBP1	Os02g0782700	LOC_Os02g54160	abscisic acid	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Our results suggest that constitutive expression of OsEREBP1 activates the jasmonate and abscisic acid signalling pathways thereby priming the rice plants for enhanced survival under abiotic or biotic stress conditions
OsEREBP1	Os02g0782700	LOC_Os02g54160	stress tolerance	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
OsEREBP1	Os02g0782700	LOC_Os02g54160	stress tolerance	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	OsEREBP1 is thus, a good candidate gene for engineering plants for multiple stress tolerance
OsEREBP1	Os02g0782700	LOC_Os02g54160	biotic stress	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
OsEREBP1	Os02g0782700	LOC_Os02g54160	biotic stress	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Our results suggest that constitutive expression of OsEREBP1 activates the jasmonate and abscisic acid signalling pathways thereby priming the rice plants for enhanced survival under abiotic or biotic stress conditions
OsEREBP1	Os02g0782700	LOC_Os02g54160	plant growth	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Constitutive expression of OsEREBP1 in rice driven by maize ubiquitin promoter did not affect normal plant growth
OsEREBP1	Os02g0782700	LOC_Os02g54160	abscisic acid biosynthesis	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	Microarray analysis revealed that over expression of OsEREBP1 caused increased expression of lipid metabolism related genes such as lipase and chloroplastic lipoxygenase as well as several genes related to jasmonate and abscisic acid biosynthesis
OsEREBP2|ERF99	Os01g0868000	LOC_Os01g64790	drought	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	On the other hand, the OsEREBP2 transcript level increased after cold, ABA, drought and high salinity treatments, indicating that OsEREBP2 may play a central role mediating the response to different abiotic stresses
OsEREBP2|ERF99	Os01g0868000	LOC_Os01g64790	salt tolerance	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	Gene expression analysis in rice varieties with contrasting salt tolerance further suggests that OsEREBP2 is involved in salt stress response in rice
OsEREBP2|ERF99	Os01g0868000	LOC_Os01g64790	salinity	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	On the other hand, the OsEREBP2 transcript level increased after cold, ABA, drought and high salinity treatments, indicating that OsEREBP2 may play a central role mediating the response to different abiotic stresses
OsEREBP2|ERF99	Os01g0868000	LOC_Os01g64790	abiotic stress	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	On the other hand, the OsEREBP2 transcript level increased after cold, ABA, drought and high salinity treatments, indicating that OsEREBP2 may play a central role mediating the response to different abiotic stresses
OsEREBP2|ERF99	Os01g0868000	LOC_Os01g64790	transcription factor	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	Thereby, two transcription factors (TFs), OsEREBP1 and OsEREBP2, belonging to the AP2/ERF family were identified
OsEREBP2|ERF99	Os01g0868000	LOC_Os01g64790	salt	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	Gene expression analysis in rice varieties with contrasting salt tolerance further suggests that OsEREBP2 is involved in salt stress response in rice
OsEREBP2|ERF99	Os01g0868000	LOC_Os01g64790	salt stress	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	Gene expression analysis in rice varieties with contrasting salt tolerance further suggests that OsEREBP2 is involved in salt stress response in rice
OsERF096	Os10g0562900	LOC_Os10g41330	transcription factor	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.
OsERF096	Os10g0562900	LOC_Os10g41330	transcription factor	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 Furthermore, an AP2/ERF (APETALA2/ethylene-responsive factor) transcription factor OsERF096 was identified as a target of miR1320 via 5&#x27;-RACE and dual luciferase assays
OsERF096	Os10g0562900	LOC_Os10g41330	tolerance	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.
OsERF096	Os10g0562900	LOC_Os10g41330	tolerance	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 Consistently, OsERF096 negatively regulated cold stress tolerance
OsERF096	Os10g0562900	LOC_Os10g41330	cold tolerance	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.
OsERF096	Os10g0562900	LOC_Os10g41330	cold stress	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 OsERF096 expression was altered by miR1320 overexpression and knockdown and exhibited an opposite pattern to that of miR1320 in different tissues and under cold stress
OsERF096	Os10g0562900	LOC_Os10g41330	cold stress	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 Consistently, OsERF096 negatively regulated cold stress tolerance
OsERF096	Os10g0562900	LOC_Os10g41330	stress	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 OsERF096 expression was altered by miR1320 overexpression and knockdown and exhibited an opposite pattern to that of miR1320 in different tissues and under cold stress
OsERF096	Os10g0562900	LOC_Os10g41330	stress	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 Consistently, OsERF096 negatively regulated cold stress tolerance
OsERF096	Os10g0562900	LOC_Os10g41330	cold	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.
OsERF096	Os10g0562900	LOC_Os10g41330	cold	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 OsERF096 expression was altered by miR1320 overexpression and knockdown and exhibited an opposite pattern to that of miR1320 in different tissues and under cold stress
OsERF096	Os10g0562900	LOC_Os10g41330	cold	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 Consistently, OsERF096 negatively regulated cold stress tolerance
OsERF096	Os10g0562900	LOC_Os10g41330	stress tolerance	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 Consistently, OsERF096 negatively regulated cold stress tolerance
OsERF096	Os10g0562900	LOC_Os10g41330	nucleus	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 Furthermore, we suggested that OsERF096 could bind to the GCC and DRE cis-elements and act as a transcriptional activator in the nucleus
OsERF096	Os10g0562900	LOC_Os10g41330	transcriptional activator	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	 Furthermore, we suggested that OsERF096 could bind to the GCC and DRE cis-elements and act as a transcriptional activator in the nucleus
OsERF1	Os04g0546800	LOC_Os04g46220	ethylene	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis	Here, we report a novel member of ERF group in rice, OsERF1 (Ethylene Response Factor gene in Oryza sativa)
OsERF1	Os04g0546800	LOC_Os04g46220	ethylene	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis	OsERF1 expressed consistently in different organs of rice and could be up-regulated by ethylene, a plant hormone associated with stress response
OsERF1	Os04g0546800	LOC_Os04g46220	ethylene	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis	Overexpression of OsERF1 in Arabidopsis up-regulated the expression of two known ethylene-responsive genes, PDF1
OsERF1	Os04g0546800	LOC_Os04g46220	ethylene	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis	These results suggest the involvement of OsERF1 in ethylene response
OsERF1	Os04g0546800	LOC_Os04g46220	ethylene	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis
OsERF1	Os04g0546800	LOC_Os04g46220	salt	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Expression of OsERF1, a transcription factor in the JA/ET pathway, was induced earlier than that of RSOsPR10 after salt, JA and ACC treatments
OsERF1	Os04g0546800	LOC_Os04g46220	sa	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Simultaneous SA treatment strongly inhibited the induction of RSOsPR10 expression and, to a lesser extent, induction of OsERF1 expression
OsERF1	Os04g0546800	LOC_Os04g46220	sa	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	These results suggest that JA/ET and SA pathways function in the stress-responsive induction of RSOsPR10, and that OsERF1 may be one of the transcriptional factors in the JA/ET pathway
OsERF1	Os04g0546800	LOC_Os04g46220	ja	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Expression of OsERF1, a transcription factor in the JA/ET pathway, was induced earlier than that of RSOsPR10 after salt, JA and ACC treatments
OsERF1	Os04g0546800	LOC_Os04g46220	transcription factor	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Expression of OsERF1, a transcription factor in the JA/ET pathway, was induced earlier than that of RSOsPR10 after salt, JA and ACC treatments
OsERF1	Os04g0546800	LOC_Os04g46220	growth	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis
OsERF106MZ	None	None	transcription factor	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	 The novel transcription factor OsERF106MZ negatively regulates shoot growth and salinity tolerance in rice through the disruption of ion homeostasis and modulation of stress-responsive gene expression
OsERF106MZ	None	None	growth	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	 The novel transcription factor OsERF106MZ negatively regulates shoot growth and salinity tolerance in rice through the disruption of ion homeostasis and modulation of stress-responsive gene expression
OsERF106MZ	None	None	shoot	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	 The novel transcription factor OsERF106MZ negatively regulates shoot growth and salinity tolerance in rice through the disruption of ion homeostasis and modulation of stress-responsive gene expression
OsERF106MZ	None	None	salinity	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	 The novel transcription factor OsERF106MZ negatively regulates shoot growth and salinity tolerance in rice through the disruption of ion homeostasis and modulation of stress-responsive gene expression
OsERF106MZ	None	None	tolerance	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	 The novel transcription factor OsERF106MZ negatively regulates shoot growth and salinity tolerance in rice through the disruption of ion homeostasis and modulation of stress-responsive gene expression
OsERF106MZ	None	None	potassium	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	 Overexpression of OsERF106MZ led to retardation of growth, relatively high levels of both malondialdehyde (MDA) and reactive oxygen species (ROS), reduced catalase (CAT) activity, and overaccumulation of both sodium (Na(+)) and potassium (K(+)) ions in transgenic rice shoots
OsERF106MZ	None	None	homeostasis	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	 The novel transcription factor OsERF106MZ negatively regulates shoot growth and salinity tolerance in rice through the disruption of ion homeostasis and modulation of stress-responsive gene expression
OsERF106MZ	None	None	primary root	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	 OsERF106MZ is expressed in germinating seeds, primary roots, and developing flowers
OsERF106MZ	None	None	reactive oxygen species	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	 Overexpression of OsERF106MZ led to retardation of growth, relatively high levels of both malondialdehyde (MDA) and reactive oxygen species (ROS), reduced catalase (CAT) activity, and overaccumulation of both sodium (Na(+)) and potassium (K(+)) ions in transgenic rice shoots
OsERF106MZ	None	None	seedlings	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.
OsERF106MZ	None	None	seedlings	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 RESULTS: Histochemical staining to examine β-glucuronidase (GUS) activity in transgenic rice seedlings harboring OsERF106MZp::GUS indicated that OsERF106MZ is mainly expressed in the root exodermis, sclerenchyma layer, and vascular system
OsERF106MZ	None	None	seedlings	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 OsERF106MZ overexpression in rice seedlings leads to an increase in primary root (PR) length
OsERF106MZ	None	None	root	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.
OsERF106MZ	None	None	root	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 However, the roles of OsERF106MZ in root growth remain poorly understood
OsERF106MZ	None	None	root	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 RESULTS: Histochemical staining to examine β-glucuronidase (GUS) activity in transgenic rice seedlings harboring OsERF106MZp::GUS indicated that OsERF106MZ is mainly expressed in the root exodermis, sclerenchyma layer, and vascular system
OsERF106MZ	None	None	root	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 OsERF106MZ overexpression in rice seedlings leads to an increase in primary root (PR) length
OsERF106MZ	None	None	root	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 CONCLUSIONS: OsERF106MZ may play a role in maintaining root growth for resource uptake when rice seeds germinate under salinity stress by alleviating ABA-mediated root growth inhibition
OsERF106MZ	None	None	growth	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.
OsERF106MZ	None	None	growth	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 However, the roles of OsERF106MZ in root growth remain poorly understood
OsERF106MZ	None	None	growth	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 CONCLUSIONS: OsERF106MZ may play a role in maintaining root growth for resource uptake when rice seeds germinate under salinity stress by alleviating ABA-mediated root growth inhibition
OsERF106MZ	None	None	stress	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.
OsERF106MZ	None	None	stress	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 CONCLUSIONS: OsERF106MZ may play a role in maintaining root growth for resource uptake when rice seeds germinate under salinity stress by alleviating ABA-mediated root growth inhibition
OsERF106MZ	None	None	seedling	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 OsERF106MZ is a salinity-induced gene that is expressed in germinating seeds and rice seedling roots
OsERF106MZ	None	None	salinity	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.
OsERF106MZ	None	None	salinity	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 CONCLUSIONS: OsERF106MZ may play a role in maintaining root growth for resource uptake when rice seeds germinate under salinity stress by alleviating ABA-mediated root growth inhibition
OsERF106MZ	None	None	root growth	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.
OsERF106MZ	None	None	root growth	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 However, the roles of OsERF106MZ in root growth remain poorly understood
OsERF106MZ	None	None	root growth	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 CONCLUSIONS: OsERF106MZ may play a role in maintaining root growth for resource uptake when rice seeds germinate under salinity stress by alleviating ABA-mediated root growth inhibition
OsERF106MZ	None	None	salinity stress	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.
OsERF106MZ	None	None	salinity stress	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 CONCLUSIONS: OsERF106MZ may play a role in maintaining root growth for resource uptake when rice seeds germinate under salinity stress by alleviating ABA-mediated root growth inhibition
OsERF106MZ	None	None	primary root	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	 OsERF106MZ overexpression in rice seedlings leads to an increase in primary root (PR) length
OsERF109	Os09g0309700	LOC_Os09g13940	resistance	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Transgenic plants overexpressing (OE) and knockdown with RNA interfering (RI) OsERF109 exhibited significantly reduced and improved drought resistance, respectively, indicating that OsERF109 negatively regulates drought resistance in rice
OsERF109	Os09g0309700	LOC_Os09g13940	resistance	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Based on these results, our data evidence that OsERF109 regulates drought resistance by affecting the ethylene biosynthesis in rice
OsERF109	Os09g0309700	LOC_Os09g13940	drought	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.
OsERF109	Os09g0309700	LOC_Os09g13940	drought	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Here, we evaluated the regulatory function of a novel rice ethylene response factor (ERF) OsERF109 in drought stress
OsERF109	Os09g0309700	LOC_Os09g13940	drought	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Transgenic plants overexpressing (OE) and knockdown with RNA interfering (RI) OsERF109 exhibited significantly reduced and improved drought resistance, respectively, indicating that OsERF109 negatively regulates drought resistance in rice
OsERF109	Os09g0309700	LOC_Os09g13940	drought	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Based on these results, our data evidence that OsERF109 regulates drought resistance by affecting the ethylene biosynthesis in rice
OsERF109	Os09g0309700	LOC_Os09g13940	drought	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Overall, our study reveals the negative role of OsERF109 in ethylene biosynthesis and drought tolerance in rice
OsERF109	Os09g0309700	LOC_Os09g13940	tolerance	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.
OsERF109	Os09g0309700	LOC_Os09g13940	tolerance	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Overall, our study reveals the negative role of OsERF109 in ethylene biosynthesis and drought tolerance in rice
OsERF109	Os09g0309700	LOC_Os09g13940	ethylene	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.
OsERF109	Os09g0309700	LOC_Os09g13940	ethylene	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Here, we evaluated the regulatory function of a novel rice ethylene response factor (ERF) OsERF109 in drought stress
OsERF109	Os09g0309700	LOC_Os09g13940	ethylene	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Quantitative real-time PCR analysis also proved the regulation of OsERF109 in the expression of OSACS6, OSACO2, and OsERF3, which have been identified to play important roles in ethylene biosynthesis
OsERF109	Os09g0309700	LOC_Os09g13940	ethylene	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Based on these results, our data evidence that OsERF109 regulates drought resistance by affecting the ethylene biosynthesis in rice
OsERF109	Os09g0309700	LOC_Os09g13940	ethylene	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Overall, our study reveals the negative role of OsERF109 in ethylene biosynthesis and drought tolerance in rice
OsERF109	Os09g0309700	LOC_Os09g13940	drought tolerance	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.
OsERF109	Os09g0309700	LOC_Os09g13940	drought tolerance	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Overall, our study reveals the negative role of OsERF109 in ethylene biosynthesis and drought tolerance in rice
OsERF109	Os09g0309700	LOC_Os09g13940	stress	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Here, we evaluated the regulatory function of a novel rice ethylene response factor (ERF) OsERF109 in drought stress
OsERF109	Os09g0309700	LOC_Os09g13940	stress	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Expression of OsERF109 was rapidly induced by stress and phytohormones
OsERF109	Os09g0309700	LOC_Os09g13940	nucleus	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Subcellular localization and transactivation assay demonstrated that OsERF109 was localized in nucleus and possessed transactivation activity
OsERF109	Os09g0309700	LOC_Os09g13940	drought resistance	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Transgenic plants overexpressing (OE) and knockdown with RNA interfering (RI) OsERF109 exhibited significantly reduced and improved drought resistance, respectively, indicating that OsERF109 negatively regulates drought resistance in rice
OsERF109	Os09g0309700	LOC_Os09g13940	drought resistance	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Based on these results, our data evidence that OsERF109 regulates drought resistance by affecting the ethylene biosynthesis in rice
OsERF109	Os09g0309700	LOC_Os09g13940	drought stress	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Here, we evaluated the regulatory function of a novel rice ethylene response factor (ERF) OsERF109 in drought stress
OsERF109	Os09g0309700	LOC_Os09g13940	ethylene response	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.
OsERF109	Os09g0309700	LOC_Os09g13940	ethylene response	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Here, we evaluated the regulatory function of a novel rice ethylene response factor (ERF) OsERF109 in drought stress
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	growth	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 OsERF115 acts as a transcriptional repressor to directly or indirectly modulate a set of grain-size genes during spikelet growth and endosperm development
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	development	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Here, we report that the ethylene response factor OsERF115 functions as a key downstream regulator for ethylene-mediated grain development
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	development	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 OsERF115 acts as a transcriptional repressor to directly or indirectly modulate a set of grain-size genes during spikelet growth and endosperm development
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	development	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 In addition, the OsERF115 orthologues are identified only in grass species, implying a conserved and unique role in the grain development of cereal crops
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	spikelet	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Overexpression of OsERF115 significantly increases grain length, width, thickness and weight by promoting longitudinal elongation and transverse division of spikelet hull cells, as well as enhancing grain-filling activity, whereas its knockout mutations lead to the opposite effects, suggesting that OsERF115 positively regulates grain size and weight
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	spikelet	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 OsERF115 acts as a transcriptional repressor to directly or indirectly modulate a set of grain-size genes during spikelet growth and endosperm development
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	grain	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Here, we report that the ethylene response factor OsERF115 functions as a key downstream regulator for ethylene-mediated grain development
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	grain	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Overexpression of OsERF115 significantly increases grain length, width, thickness and weight by promoting longitudinal elongation and transverse division of spikelet hull cells, as well as enhancing grain-filling activity, whereas its knockout mutations lead to the opposite effects, suggesting that OsERF115 positively regulates grain size and weight
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	grain	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Importantly, haplotype analysis reveals that the SNP variations in the EIN3-binding sites of OsERF115 promoter are significantly associated with the OsERF115 expression levels and grain weight, suggesting that natural variations in the OsERF115 promoter contribute to grain-size diversity
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	grain	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 In addition, the OsERF115 orthologues are identified only in grass species, implying a conserved and unique role in the grain development of cereal crops
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	grain length	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Overexpression of OsERF115 significantly increases grain length, width, thickness and weight by promoting longitudinal elongation and transverse division of spikelet hull cells, as well as enhancing grain-filling activity, whereas its knockout mutations lead to the opposite effects, suggesting that OsERF115 positively regulates grain size and weight
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	grain size	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Overexpression of OsERF115 significantly increases grain length, width, thickness and weight by promoting longitudinal elongation and transverse division of spikelet hull cells, as well as enhancing grain-filling activity, whereas its knockout mutations lead to the opposite effects, suggesting that OsERF115 positively regulates grain size and weight
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	ethylene	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Here, we report that the ethylene response factor OsERF115 functions as a key downstream regulator for ethylene-mediated grain development
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	endosperm	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 OsERF115 acts as a transcriptional repressor to directly or indirectly modulate a set of grain-size genes during spikelet growth and endosperm development
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	grain weight	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Importantly, haplotype analysis reveals that the SNP variations in the EIN3-binding sites of OsERF115 promoter are significantly associated with the OsERF115 expression levels and grain weight, suggesting that natural variations in the OsERF115 promoter contribute to grain-size diversity
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	endosperm development	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 OsERF115 acts as a transcriptional repressor to directly or indirectly modulate a set of grain-size genes during spikelet growth and endosperm development
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	grain-filling	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Overexpression of OsERF115 significantly increases grain length, width, thickness and weight by promoting longitudinal elongation and transverse division of spikelet hull cells, as well as enhancing grain-filling activity, whereas its knockout mutations lead to the opposite effects, suggesting that OsERF115 positively regulates grain size and weight
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	ethylene response	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 Here, we report that the ethylene response factor OsERF115 functions as a key downstream regulator for ethylene-mediated grain development
OsERF115|AP2EREBP110	Os08g0521600	LOC_Os08g41030	transcriptional repressor	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	 OsERF115 acts as a transcriptional repressor to directly or indirectly modulate a set of grain-size genes during spikelet growth and endosperm development
OsERF2	Os06g0181700	LOC_Os06g08340	root	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.
OsERF2	Os06g0181700	LOC_Os06g08340	root	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	Here, the regulatory function of OsERF2 involved in root growth was investigated using the gain-function mutant of OsERF2 (nsf2857) and the artificial microRNA-mediated silenced lines of OsERF2 (Ami-OsERF2)
OsERF2	Os06g0181700	LOC_Os06g08340	root	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	These results indicate that OsERF2 is required for the control of root architecture and ABA- and ethylene-response by tuning expression of series genes involved in sugar metabolism and hormone signaling pathways
OsERF2	Os06g0181700	LOC_Os06g08340	growth	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.
OsERF2	Os06g0181700	LOC_Os06g08340	growth	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	Here, the regulatory function of OsERF2 involved in root growth was investigated using the gain-function mutant of OsERF2 (nsf2857) and the artificial microRNA-mediated silenced lines of OsERF2 (Ami-OsERF2)
OsERF2	Os06g0181700	LOC_Os06g08340	architecture	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	These results indicate that OsERF2 is required for the control of root architecture and ABA- and ethylene-response by tuning expression of series genes involved in sugar metabolism and hormone signaling pathways
OsERF2	Os06g0181700	LOC_Os06g08340	sugar	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	These results indicate that OsERF2 is required for the control of root architecture and ABA- and ethylene-response by tuning expression of series genes involved in sugar metabolism and hormone signaling pathways
OsERF2	Os06g0181700	LOC_Os06g08340	root architecture	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	These results indicate that OsERF2 is required for the control of root architecture and ABA- and ethylene-response by tuning expression of series genes involved in sugar metabolism and hormone signaling pathways
OsERF2	Os06g0181700	LOC_Os06g08340	sucrose	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.
OsERF2	Os06g0181700	LOC_Os06g08340	sucrose	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	In addition, OsERF2 affected the accumulation of sucrose and UDPG by mediating expression of key genes involved in sucrose metabolism
OsERF34	Os04g0550200	LOC_Os04g46440	cell wall	ETHYLENE RESPONSE FACTOR 34 promotes secondary cell wall thickening and strength of rice peduncles.	 OsERF34 and RMD are highly expressed in sclerenchymatous peduncle cells that are fortified by thick secondary cell walls (SCWs) that provide mechanical peduncle strength
OsERF34	Os04g0550200	LOC_Os04g46440	secondary cell wall	ETHYLENE RESPONSE FACTOR 34 promotes secondary cell wall thickening and strength of rice peduncles.	 OsERF34 and RMD are highly expressed in sclerenchymatous peduncle cells that are fortified by thick secondary cell walls (SCWs) that provide mechanical peduncle strength
OsERF34	Os04g0550200	LOC_Os04g46440	peduncle	ETHYLENE RESPONSE FACTOR 34 promotes secondary cell wall thickening and strength of rice peduncles	ETHYLENE RESPONSE FACTOR 34 promotes secondary cell wall thickening and strength of rice peduncles
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	root	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	root	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	When OsERF48 was overexpressed in an either a root-specific (ROX(OsERF48) ) or whole-body (OX(OsERF48) ) manner, transgenic plants showed a longer and denser root phenotype compared to the nontransgenic (NT) controls
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	root	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Our results demonstrated that OsERF48 regulates OsCML16, a calmodulin-like protein gene that enhance root growth and drought tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	growth	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	growth	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Our results demonstrated that OsERF48 regulates OsCML16, a calmodulin-like protein gene that enhance root growth and drought tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	drought	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	drought	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Our results demonstrated that OsERF48 regulates OsCML16, a calmodulin-like protein gene that enhance root growth and drought tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	tolerance	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Our results demonstrated that OsERF48 regulates OsCML16, a calmodulin-like protein gene that enhance root growth and drought tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	abiotic stress	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	They included, OsCML16, a key gene in calcium signaling during abiotic stress, which was shown to be a direct target of OsERF48 by Chromatin Immunoprecipitation (ChIP)-qPCR analysis and a transient protoplast expression assay
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	drought tolerance	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	drought tolerance	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Our results demonstrated that OsERF48 regulates OsCML16, a calmodulin-like protein gene that enhance root growth and drought tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	biotic stress	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	They included, OsCML16, a key gene in calcium signaling during abiotic stress, which was shown to be a direct target of OsERF48 by Chromatin Immunoprecipitation (ChIP)-qPCR analysis and a transient protoplast expression assay
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	calcium	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	They included, OsCML16, a key gene in calcium signaling during abiotic stress, which was shown to be a direct target of OsERF48 by Chromatin Immunoprecipitation (ChIP)-qPCR analysis and a transient protoplast expression assay
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	transcription factor	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	In the present study, we report a comprehensive analysis of the transcriptome and metabolome of rice overexpressing the OsDRAP1 gene, which encodes an ERF transcription factor and was previously identified to be conferring drought tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	drought	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	In the present study, we report a comprehensive analysis of the transcriptome and metabolome of rice overexpressing the OsDRAP1 gene, which encodes an ERF transcription factor and was previously identified to be conferring drought tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	salt	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	Phenotypic analysis showed that OsDRAP1 overexpression (OE) improved salt tolerance by increasing the survival rate under salt stress
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	salt	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	OsDRAP1 affected the physiological indices such as superoxide dismutase (SOD), catalase (CAT) and malondialdehyde (MDA) to enhance redox homeostasis and membrane stability in response to salt stress
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	salt	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	Higher basal expression of OsDRAP1 resulted in differential expression of genes that potentially function in intrinsic salt tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	tolerance	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	In the present study, we report a comprehensive analysis of the transcriptome and metabolome of rice overexpressing the OsDRAP1 gene, which encodes an ERF transcription factor and was previously identified to be conferring drought tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	tolerance	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	Phenotypic analysis showed that OsDRAP1 overexpression (OE) improved salt tolerance by increasing the survival rate under salt stress
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	tolerance	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	Higher basal expression of OsDRAP1 resulted in differential expression of genes that potentially function in intrinsic salt tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	drought tolerance	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	In the present study, we report a comprehensive analysis of the transcriptome and metabolome of rice overexpressing the OsDRAP1 gene, which encodes an ERF transcription factor and was previously identified to be conferring drought tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	salt tolerance	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	Phenotypic analysis showed that OsDRAP1 overexpression (OE) improved salt tolerance by increasing the survival rate under salt stress
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	salt tolerance	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	Higher basal expression of OsDRAP1 resulted in differential expression of genes that potentially function in intrinsic salt tolerance
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	salt stress	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	Phenotypic analysis showed that OsDRAP1 overexpression (OE) improved salt tolerance by increasing the survival rate under salt stress
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	salt stress	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	OsDRAP1 affected the physiological indices such as superoxide dismutase (SOD), catalase (CAT) and malondialdehyde (MDA) to enhance redox homeostasis and membrane stability in response to salt stress
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	stress	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	Phenotypic analysis showed that OsDRAP1 overexpression (OE) improved salt tolerance by increasing the survival rate under salt stress
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	stress	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	OsDRAP1 affected the physiological indices such as superoxide dismutase (SOD), catalase (CAT) and malondialdehyde (MDA) to enhance redox homeostasis and membrane stability in response to salt stress
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	homeostasis	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	OsDRAP1 affected the physiological indices such as superoxide dismutase (SOD), catalase (CAT) and malondialdehyde (MDA) to enhance redox homeostasis and membrane stability in response to salt stress
OsERF48|OsDRAP1	Os08g0408500	LOC_Os08g31580	redox homeostasis	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice	OsDRAP1 affected the physiological indices such as superoxide dismutase (SOD), catalase (CAT) and malondialdehyde (MDA) to enhance redox homeostasis and membrane stability in response to salt stress
OsERF71	Os06g0194000	LOC_Os06g09390	root	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.
OsERF71	Os06g0194000	LOC_Os06g09390	root	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	OsERF71 overexpression in roots elevated the expression levels of genes related to cell wall loosening and lignin biosynthetic genes, which correlated with changes in root structure, the formation of enlarged aerenchyma and high lignification levels
OsERF71	Os06g0194000	LOC_Os06g09390	growth	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Overexpression of OsERF71 either throughout the entire plant or specifically in roots, resulted in a drought resistance phenotype at the vegetative growth stage, indicating that overexpression in roots was sufficient to confer drought resistance
OsERF71	Os06g0194000	LOC_Os06g09390	resistance	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Overexpression of OsERF71 either throughout the entire plant or specifically in roots, resulted in a drought resistance phenotype at the vegetative growth stage, indicating that overexpression in roots was sufficient to confer drought resistance
OsERF71	Os06g0194000	LOC_Os06g09390	drought	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.
OsERF71	Os06g0194000	LOC_Os06g09390	drought	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Overexpression of OsERF71 either throughout the entire plant or specifically in roots, resulted in a drought resistance phenotype at the vegetative growth stage, indicating that overexpression in roots was sufficient to confer drought resistance
OsERF71	Os06g0194000	LOC_Os06g09390	transcription factor	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.
OsERF71	Os06g0194000	LOC_Os06g09390	vegetative	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Overexpression of OsERF71 either throughout the entire plant or specifically in roots, resulted in a drought resistance phenotype at the vegetative growth stage, indicating that overexpression in roots was sufficient to confer drought resistance
OsERF71	Os06g0194000	LOC_Os06g09390	cell wall	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	OsERF71 overexpression in roots elevated the expression levels of genes related to cell wall loosening and lignin biosynthetic genes, which correlated with changes in root structure, the formation of enlarged aerenchyma and high lignification levels
OsERF71	Os06g0194000	LOC_Os06g09390	drought resistance	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.
OsERF71	Os06g0194000	LOC_Os06g09390	drought resistance	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Overexpression of OsERF71 either throughout the entire plant or specifically in roots, resulted in a drought resistance phenotype at the vegetative growth stage, indicating that overexpression in roots was sufficient to confer drought resistance
OsERF71	Os06g0194000	LOC_Os06g09390	lignin	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	OsERF71 overexpression in roots elevated the expression levels of genes related to cell wall loosening and lignin biosynthetic genes, which correlated with changes in root structure, the formation of enlarged aerenchyma and high lignification levels
OsERF71	Os06g0194000	LOC_Os06g09390	lignin	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Furthermore, OsERF71 was found to directly bind to the promoter of OsCCR1, a key gene in lignin biosynthesis
OsERF71	Os06g0194000	LOC_Os06g09390	lignin biosynthesis	Overexpression of the OsERF71 transcription factor Alters Rice Root Structure and Drought Resistance.	Furthermore, OsERF71 was found to directly bind to the promoter of OsCCR1, a key gene in lignin biosynthesis
OsERF71	Os06g0194000	LOC_Os06g09390	root	Rice OsERF71-mediated root modification affects shoot drought tolerance.	Our latest study demonstrated that overexpression of the OsERF71 in rice roots under drought conditions modifies root structure including larger aerenchyma and radial root growth, and thereby, protects the rice plants from drought stresses
OsERF71	Os06g0194000	LOC_Os06g09390	drought	Rice OsERF71-mediated root modification affects shoot drought tolerance.	Our latest study demonstrated that overexpression of the OsERF71 in rice roots under drought conditions modifies root structure including larger aerenchyma and radial root growth, and thereby, protects the rice plants from drought stresses
OsERF71	Os06g0194000	LOC_Os06g09390	drought stress	Rice OsERF71-mediated root modification affects shoot drought tolerance.	Our latest study demonstrated that overexpression of the OsERF71 in rice roots under drought conditions modifies root structure including larger aerenchyma and radial root growth, and thereby, protects the rice plants from drought stresses
OsERF71	Os06g0194000	LOC_Os06g09390	transcription factor	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	Using yeast one-hybrid screening, coupled with chromatin immunoprecipitation analysis, a basic helix-loop-helix protein (OsbHLH59) and an APETALA2/ETHYLENE RESPONSE FACTOR (AP2/ERF) transcription factor OsERF71 directly binding to the 562<U+00A0>bp key sequence to activate the expression of OsXIP were identified, which is further supported by transient expression assay
OsERF71	Os06g0194000	LOC_Os06g09390	root	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	Moreover, transcriptional analysis revealed that mechanical wounding and treatment with MeJA resulted in an obvious increase in transcript levels of OsbHLH59 and OsERF71 in root and shoot tissues
OsERF71	Os06g0194000	LOC_Os06g09390	shoot	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	Moreover, transcriptional analysis revealed that mechanical wounding and treatment with MeJA resulted in an obvious increase in transcript levels of OsbHLH59 and OsERF71 in root and shoot tissues
OsERF71	Os06g0194000	LOC_Os06g09390	wounding	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	Moreover, transcriptional analysis revealed that mechanical wounding and treatment with MeJA resulted in an obvious increase in transcript levels of OsbHLH59 and OsERF71 in root and shoot tissues
OsERF71	Os06g0194000	LOC_Os06g09390	ethylene response	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	Using yeast one-hybrid screening, coupled with chromatin immunoprecipitation analysis, a basic helix-loop-helix protein (OsbHLH59) and an APETALA2/ETHYLENE RESPONSE FACTOR (AP2/ERF) transcription factor OsERF71 directly binding to the 562<U+00A0>bp key sequence to activate the expression of OsXIP were identified, which is further supported by transient expression assay
OsERF71	Os06g0194000	LOC_Os06g09390	drought	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.
OsERF71	Os06g0194000	LOC_Os06g09390	drought	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Overexpression of the OsERF71 in Nipponbare demonstrated a significant increase in tolerance to drought stress and a reduced rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	drought	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	In contrast, OsERF71 interference lines were sensitive to drought stress and exhibited a higher rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	drought	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Moreover, OsERF71 regulated the expression of several ABA- responsive and proline biosynthesis genes under drought stress, resulting in enhanced sensitivity to exogenous ABA treatment and proline accumulation
OsERF71	Os06g0194000	LOC_Os06g09390	drought	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Accordingly, we suggest that OsERF71 plays a positive role in drought stress tolerance by increasing the expression of genes associated with ABA signaling and proline biosynthesis under stress
OsERF71	Os06g0194000	LOC_Os06g09390	tolerance	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.
OsERF71	Os06g0194000	LOC_Os06g09390	tolerance	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Overexpression of the OsERF71 in Nipponbare demonstrated a significant increase in tolerance to drought stress and a reduced rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	tolerance	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Accordingly, we suggest that OsERF71 plays a positive role in drought stress tolerance by increasing the expression of genes associated with ABA signaling and proline biosynthesis under stress
OsERF71	Os06g0194000	LOC_Os06g09390	abiotic stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	The expression of OsERF71 was induced by abscisic acid (ABA) and various abiotic stresses preferentially in IRAT109 under ABA, dehydration, and polyethyleneglycol (PEG) treatments
OsERF71	Os06g0194000	LOC_Os06g09390	ABA	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.
OsERF71	Os06g0194000	LOC_Os06g09390	ABA	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Moreover, OsERF71 regulated the expression of several ABA- responsive and proline biosynthesis genes under drought stress, resulting in enhanced sensitivity to exogenous ABA treatment and proline accumulation
OsERF71	Os06g0194000	LOC_Os06g09390	ABA	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Accordingly, we suggest that OsERF71 plays a positive role in drought stress tolerance by increasing the expression of genes associated with ABA signaling and proline biosynthesis under stress
OsERF71	Os06g0194000	LOC_Os06g09390	drought tolerance	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.
OsERF71	Os06g0194000	LOC_Os06g09390	stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Overexpression of the OsERF71 in Nipponbare demonstrated a significant increase in tolerance to drought stress and a reduced rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	In contrast, OsERF71 interference lines were sensitive to drought stress and exhibited a higher rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Accordingly, we suggest that OsERF71 plays a positive role in drought stress tolerance by increasing the expression of genes associated with ABA signaling and proline biosynthesis under stress
OsERF71	Os06g0194000	LOC_Os06g09390	biotic stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	The expression of OsERF71 was induced by abscisic acid (ABA) and various abiotic stresses preferentially in IRAT109 under ABA, dehydration, and polyethyleneglycol (PEG) treatments
OsERF71	Os06g0194000	LOC_Os06g09390	ABA	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.
OsERF71	Os06g0194000	LOC_Os06g09390	ABA	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Moreover, OsERF71 regulated the expression of several ABA- responsive and proline biosynthesis genes under drought stress, resulting in enhanced sensitivity to exogenous ABA treatment and proline accumulation
OsERF71	Os06g0194000	LOC_Os06g09390	ABA	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Accordingly, we suggest that OsERF71 plays a positive role in drought stress tolerance by increasing the expression of genes associated with ABA signaling and proline biosynthesis under stress
OsERF71	Os06g0194000	LOC_Os06g09390	drought stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Overexpression of the OsERF71 in Nipponbare demonstrated a significant increase in tolerance to drought stress and a reduced rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	drought stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	In contrast, OsERF71 interference lines were sensitive to drought stress and exhibited a higher rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	drought stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Moreover, OsERF71 regulated the expression of several ABA- responsive and proline biosynthesis genes under drought stress, resulting in enhanced sensitivity to exogenous ABA treatment and proline accumulation
OsERF71	Os06g0194000	LOC_Os06g09390	drought stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Accordingly, we suggest that OsERF71 plays a positive role in drought stress tolerance by increasing the expression of genes associated with ABA signaling and proline biosynthesis under stress
OsERF71	Os06g0194000	LOC_Os06g09390	water loss	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Overexpression of the OsERF71 in Nipponbare demonstrated a significant increase in tolerance to drought stress and a reduced rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	water loss	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	In contrast, OsERF71 interference lines were sensitive to drought stress and exhibited a higher rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	drought stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Overexpression of the OsERF71 in Nipponbare demonstrated a significant increase in tolerance to drought stress and a reduced rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	drought stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	In contrast, OsERF71 interference lines were sensitive to drought stress and exhibited a higher rate of water loss
OsERF71	Os06g0194000	LOC_Os06g09390	drought stress	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Accordingly, we suggest that OsERF71 plays a positive role in drought stress tolerance by increasing the expression of genes associated with ABA signaling and proline biosynthesis under stress
OsERF71	Os06g0194000	LOC_Os06g09390	abscisic acid	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	The expression of OsERF71 was induced by abscisic acid (ABA) and various abiotic stresses preferentially in IRAT109 under ABA, dehydration, and polyethyleneglycol (PEG) treatments
OsERF71	Os06g0194000	LOC_Os06g09390	stress tolerance	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Accordingly, we suggest that OsERF71 plays a positive role in drought stress tolerance by increasing the expression of genes associated with ABA signaling and proline biosynthesis under stress
OsERF83	Os03g0860100	LOC_Os03g64260	transcription factor	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Taken together, our findings show that OsERF83 is a novel ERF transcription factor that confers blast resistance by regulating the expression of defense-related genes in rice
OsERF83	Os03g0860100	LOC_Os03g64260	resistance	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.
OsERF83	Os03g0860100	LOC_Os03g64260	resistance	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Transgenic rice plants overexpressing OsERF83 exhibited significantly suppressed lesion formation after rice blast infection, indicating that OsERF83 positively regulates disease resistance in rice
OsERF83	Os03g0860100	LOC_Os03g64260	resistance	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Taken together, our findings show that OsERF83 is a novel ERF transcription factor that confers blast resistance by regulating the expression of defense-related genes in rice
OsERF83	Os03g0860100	LOC_Os03g64260	ethylene	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.
OsERF83	Os03g0860100	LOC_Os03g64260	disease	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.
OsERF83	Os03g0860100	LOC_Os03g64260	disease	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Transgenic rice plants overexpressing OsERF83 exhibited significantly suppressed lesion formation after rice blast infection, indicating that OsERF83 positively regulates disease resistance in rice
OsERF83	Os03g0860100	LOC_Os03g64260	salicylic acid	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	OsERF83 expression was also induced by treatments with methyl jasmonate, ethephon, and salicylic acid, indicating that multiple phytohormones could be involved in the regulation of OsERF83 expression under biotic stress
OsERF83	Os03g0860100	LOC_Os03g64260	blast	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Transgenic rice plants overexpressing OsERF83 exhibited significantly suppressed lesion formation after rice blast infection, indicating that OsERF83 positively regulates disease resistance in rice
OsERF83	Os03g0860100	LOC_Os03g64260	blast	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Taken together, our findings show that OsERF83 is a novel ERF transcription factor that confers blast resistance by regulating the expression of defense-related genes in rice
OsERF83	Os03g0860100	LOC_Os03g64260	disease resistance	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.
OsERF83	Os03g0860100	LOC_Os03g64260	disease resistance	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Transgenic rice plants overexpressing OsERF83 exhibited significantly suppressed lesion formation after rice blast infection, indicating that OsERF83 positively regulates disease resistance in rice
OsERF83	Os03g0860100	LOC_Os03g64260	stress	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	OsERF83 expression was also induced by treatments with methyl jasmonate, ethephon, and salicylic acid, indicating that multiple phytohormones could be involved in the regulation of OsERF83 expression under biotic stress
OsERF83	Os03g0860100	LOC_Os03g64260	magnaporthe oryzae	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.
OsERF83	Os03g0860100	LOC_Os03g64260	biotic stress	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	OsERF83 expression was also induced by treatments with methyl jasmonate, ethephon, and salicylic acid, indicating that multiple phytohormones could be involved in the regulation of OsERF83 expression under biotic stress
OsERF83	Os03g0860100	LOC_Os03g64260	blast resistance	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Taken together, our findings show that OsERF83 is a novel ERF transcription factor that confers blast resistance by regulating the expression of defense-related genes in rice
OsERF83	Os03g0860100	LOC_Os03g64260	transcriptional activator	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Subcellular localization and transactivation analyses demonstrated that OsERF83 is a nucleus-localized transcriptional activator
OsERF83	Os03g0860100	LOC_Os03g64260	ethylene response	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.
OsERF83	Os03g0860100	LOC_Os03g64260	lesion	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Transgenic rice plants overexpressing OsERF83 exhibited significantly suppressed lesion formation after rice blast infection, indicating that OsERF83 positively regulates disease resistance in rice
OsERF83	Os03g0860100	LOC_Os03g64260	methyl jasmonate	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	OsERF83 expression was also induced by treatments with methyl jasmonate, ethephon, and salicylic acid, indicating that multiple phytohormones could be involved in the regulation of OsERF83 expression under biotic stress
OsERF83	Os03g0860100	LOC_Os03g64260	transcription factor	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 is a transcription factor localized to the nucleus and induced in response to various abiotic stresses, such as drought and abscisic acid (ABA)
OsERF83	Os03g0860100	LOC_Os03g64260	drought	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 is a transcription factor localized to the nucleus and induced in response to various abiotic stresses, such as drought and abscisic acid (ABA)
OsERF83	Os03g0860100	LOC_Os03g64260	drought	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	Overexpression of OsERF83 in transgenic plants (OsERF83OX) significantly increased drought tolerance, with higher photochemical efficiency in rice
OsERF83	Os03g0860100	LOC_Os03g64260	drought	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	Transcriptome analysis revealed that OsERF83 regulates drought response genes, which are related to the transporter (OsNPF8
OsERF83	Os03g0860100	LOC_Os03g64260	abiotic stress	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 is a transcription factor localized to the nucleus and induced in response to various abiotic stresses, such as drought and abscisic acid (ABA)
OsERF83	Os03g0860100	LOC_Os03g64260	drought tolerance	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	Overexpression of OsERF83 in transgenic plants (OsERF83OX) significantly increased drought tolerance, with higher photochemical efficiency in rice
OsERF83	Os03g0860100	LOC_Os03g64260	stress	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	Our results provide new insight into the multiple roles of OsERF83 in the cross-talk between abiotic and biotic stress signaling pathways
OsERF83	Os03g0860100	LOC_Os03g64260	transporter	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	Transcriptome analysis revealed that OsERF83 regulates drought response genes, which are related to the transporter (OsNPF8
OsERF83	Os03g0860100	LOC_Os03g64260	nucleus	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 is a transcription factor localized to the nucleus and induced in response to various abiotic stresses, such as drought and abscisic acid (ABA)
OsERF83	Os03g0860100	LOC_Os03g64260	biotic stress	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 is a transcription factor localized to the nucleus and induced in response to various abiotic stresses, such as drought and abscisic acid (ABA)
OsERF83	Os03g0860100	LOC_Os03g64260	biotic stress	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 also up-regulates biotic stress-associated genes, including PATHOGENESIS-RELATED PROTEIN (PR), WALL-ASSOCIATED KINASE (WAK), CELLULOSE SYNTHASE-LIKE PROTEIN E1 (CslE1), and LYSM RECEPTOR-LIKE KINASE (RLK) genes
OsERF83	Os03g0860100	LOC_Os03g64260	biotic stress	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	Our results provide new insight into the multiple roles of OsERF83 in the cross-talk between abiotic and biotic stress signaling pathways
OsERF83	Os03g0860100	LOC_Os03g64260	cellulose	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 also up-regulates biotic stress-associated genes, including PATHOGENESIS-RELATED PROTEIN (PR), WALL-ASSOCIATED KINASE (WAK), CELLULOSE SYNTHASE-LIKE PROTEIN E1 (CslE1), and LYSM RECEPTOR-LIKE KINASE (RLK) genes
OsERF83	Os03g0860100	LOC_Os03g64260	abscisic acid	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 is a transcription factor localized to the nucleus and induced in response to various abiotic stresses, such as drought and abscisic acid (ABA)
OsERF83	Os03g0860100	LOC_Os03g64260	Kinase	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 also up-regulates biotic stress-associated genes, including PATHOGENESIS-RELATED PROTEIN (PR), WALL-ASSOCIATED KINASE (WAK), CELLULOSE SYNTHASE-LIKE PROTEIN E1 (CslE1), and LYSM RECEPTOR-LIKE KINASE (RLK) genes
OsERF83	Os03g0860100	LOC_Os03g64260	kinase	Overexpression of OsERF83, a Vascular Tissue-Specific Transcription Factor Gene, Confers Drought Tolerance in Rice	OsERF83 also up-regulates biotic stress-associated genes, including PATHOGENESIS-RELATED PROTEIN (PR), WALL-ASSOCIATED KINASE (WAK), CELLULOSE SYNTHASE-LIKE PROTEIN E1 (CslE1), and LYSM RECEPTOR-LIKE KINASE (RLK) genes
OsERF922	Os01g0752500	LOC_Os01g54890	disease	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	Rice OsERF922, encoding an APETELA2/ethylene response factor (AP2/ERF) type transcription factor, is rapidly and strongly induced by abscisic acid (ABA) and salt treatments, as well as by both virulent and avirulent pathovars of Magnaporthe oryzae, the causal agent of rice blast disease
OsERF922	Os01g0752500	LOC_Os01g54890	magnaporthe oryzae	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	Rice OsERF922, encoding an APETELA2/ethylene response factor (AP2/ERF) type transcription factor, is rapidly and strongly induced by abscisic acid (ABA) and salt treatments, as well as by both virulent and avirulent pathovars of Magnaporthe oryzae, the causal agent of rice blast disease
OsERF922	Os01g0752500	LOC_Os01g54890	magnaporthe oryzae	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance
OsERF922	Os01g0752500	LOC_Os01g54890	transcription factor	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	Rice OsERF922, encoding an APETELA2/ethylene response factor (AP2/ERF) type transcription factor, is rapidly and strongly induced by abscisic acid (ABA) and salt treatments, as well as by both virulent and avirulent pathovars of Magnaporthe oryzae, the causal agent of rice blast disease
OsERF922	Os01g0752500	LOC_Os01g54890	transcription factor	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance
OsERF922	Os01g0752500	LOC_Os01g54890	biotic stress	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	These results suggest that OsERF922 is integrated into the cross-talk between biotic and abiotic stress-signalling networks perhaps through modulation of the ABA levels
OsERF922	Os01g0752500	LOC_Os01g54890	ABA	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	Expression of the ABA biosynthesis-related genes, 9-cis-epoxycarotenoid dioxygenase (NCED) 3 and 4, was upregulated in the OsERF922-overexpressing plants, and NCED4 was downregulated in the RNAi lines
OsERF922	Os01g0752500	LOC_Os01g54890	ABA	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	These results suggest that OsERF922 is integrated into the cross-talk between biotic and abiotic stress-signalling networks perhaps through modulation of the ABA levels
OsERF922	Os01g0752500	LOC_Os01g54890	ethylene	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	Rice OsERF922, encoding an APETELA2/ethylene response factor (AP2/ERF) type transcription factor, is rapidly and strongly induced by abscisic acid (ABA) and salt treatments, as well as by both virulent and avirulent pathovars of Magnaporthe oryzae, the causal agent of rice blast disease
OsERF922	Os01g0752500	LOC_Os01g54890	blast	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	Rice OsERF922, encoding an APETELA2/ethylene response factor (AP2/ERF) type transcription factor, is rapidly and strongly induced by abscisic acid (ABA) and salt treatments, as well as by both virulent and avirulent pathovars of Magnaporthe oryzae, the causal agent of rice blast disease
OsERF922	Os01g0752500	LOC_Os01g54890	shoot	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	In addition, the OsERF922-overexpressing lines exhibited decreased tolerance to salt stress with an increased Na(+)/K(+) ratio in the shoots
OsERF922	Os01g0752500	LOC_Os01g54890	abiotic stress	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	These results suggest that OsERF922 is integrated into the cross-talk between biotic and abiotic stress-signalling networks perhaps through modulation of the ABA levels
OsERF922	Os01g0752500	LOC_Os01g54890	salt	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	Rice OsERF922, encoding an APETELA2/ethylene response factor (AP2/ERF) type transcription factor, is rapidly and strongly induced by abscisic acid (ABA) and salt treatments, as well as by both virulent and avirulent pathovars of Magnaporthe oryzae, the causal agent of rice blast disease
OsERF922	Os01g0752500	LOC_Os01g54890	salt	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	In addition, the OsERF922-overexpressing lines exhibited decreased tolerance to salt stress with an increased Na(+)/K(+) ratio in the shoots
OsERF922	Os01g0752500	LOC_Os01g54890	salt	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance
OsERF922	Os01g0752500	LOC_Os01g54890	salt stress	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	In addition, the OsERF922-overexpressing lines exhibited decreased tolerance to salt stress with an increased Na(+)/K(+) ratio in the shoots
OsERF922	Os01g0752500	LOC_Os01g54890	salt tolerance	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance
OsERF922	Os01g0752500	LOC_Os01g54890	blast disease	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance	Rice OsERF922, encoding an APETELA2/ethylene response factor (AP2/ERF) type transcription factor, is rapidly and strongly induced by abscisic acid (ABA) and salt treatments, as well as by both virulent and avirulent pathovars of Magnaporthe oryzae, the causal agent of rice blast disease
OsERF922	Os01g0752500	LOC_Os01g54890	resistance	Enhanced Rice Blast Resistance by CRISPR/Cas9-Targeted Mutagenesis of the ERF Transcription Factor Gene OsERF922.	Here, we report the improvement of rice blast resistance by engineering a CRISPR/Cas9 SSN (C-ERF922) targeting the OsERF922 gene in rice
OsERF922	Os01g0752500	LOC_Os01g54890	blast	Enhanced Rice Blast Resistance by CRISPR/Cas9-Targeted Mutagenesis of the ERF Transcription Factor Gene OsERF922.	Here, we report the improvement of rice blast resistance by engineering a CRISPR/Cas9 SSN (C-ERF922) targeting the OsERF922 gene in rice
OsERF922	Os01g0752500	LOC_Os01g54890	blast resistance	Enhanced Rice Blast Resistance by CRISPR/Cas9-Targeted Mutagenesis of the ERF Transcription Factor Gene OsERF922.	Here, we report the improvement of rice blast resistance by engineering a CRISPR/Cas9 SSN (C-ERF922) targeting the OsERF922 gene in rice
OsEro1	Os03g0733800	LOC_Os03g52340	seed	ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm	Inhibition of the formation of native disulfide bonds was also observed in the seeds of the esp2 mutant, which lacks protein disulfide isomerase-like (PDIL)1;1, but shows enhanced OsEro1 expression
OsEro1	Os03g0733800	LOC_Os03g52340	endosperm	ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm	Here, we investigated an electron transfer pathway for the formation of protein disulfide bonds in the rER of the rice endosperm, focusing on the roles of the thiol-disulfide oxidoreductase, OsEro1
OsERS1	Os10g0369000	LOC_Os10g22380	anther	A Rice Glutamyl-tRNA Synthetase Modulates Early Anther Cell Division and Patterning.	Notably, the anther defects of osers1 are causally associated with the abnormal accumulation of H2O2, which can reconstitute the osers1 phenotype when applied to wild type
OsERS1	Os10g0369000	LOC_Os10g22380	node	A Rice Glutamyl-tRNA Synthetase Modulates Early Anther Cell Division and Patterning.	Further, metabolomics profiling reveals that OsERS1 is an important node for multiple metabolic pathways, indicated by the accumulation of amino acids and TCA components in osers1 anthers
OsESG1	Os01g0223800	LOC_Os01g12410	root	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Here, we identified an S-domain receptor-like kinase OsESG1 from rice (Oryza sativa), and identified its involvement in early crown root (CR) development and drought response
OsESG1	Os01g0223800	LOC_Os01g12410	auxin	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Results above suggested that OsESG1 may regulate CR initiation and development by controlling auxin response and distribution, and participate in stress response by regulating the activities of antioxidants and expressions of stress-regulated genes
OsESG1	Os01g0223800	LOC_Os01g12410	development	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Here, we identified an S-domain receptor-like kinase OsESG1 from rice (Oryza sativa), and identified its involvement in early crown root (CR) development and drought response
OsESG1	Os01g0223800	LOC_Os01g12410	development	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Results above suggested that OsESG1 may regulate CR initiation and development by controlling auxin response and distribution, and participate in stress response by regulating the activities of antioxidants and expressions of stress-regulated genes
OsESG1	Os01g0223800	LOC_Os01g12410	drought	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Here, we identified an S-domain receptor-like kinase OsESG1 from rice (Oryza sativa), and identified its involvement in early crown root (CR) development and drought response
OsESG1	Os01g0223800	LOC_Os01g12410	stress	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Results above suggested that OsESG1 may regulate CR initiation and development by controlling auxin response and distribution, and participate in stress response by regulating the activities of antioxidants and expressions of stress-regulated genes
OsESG1	Os01g0223800	LOC_Os01g12410	auxin response	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Results above suggested that OsESG1 may regulate CR initiation and development by controlling auxin response and distribution, and participate in stress response by regulating the activities of antioxidants and expressions of stress-regulated genes
OsESG1	Os01g0223800	LOC_Os01g12410	Kinase	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Here, we identified an S-domain receptor-like kinase OsESG1 from rice (Oryza sativa), and identified its involvement in early crown root (CR) development and drought response
OsESG1	Os01g0223800	LOC_Os01g12410	Kinase	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	The OsESG1 kinase domain possessed auto-phosphorylation activity and was able to phosphorylate MBP and His proteins
OsESG1	Os01g0223800	LOC_Os01g12410	crown	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Here, we identified an S-domain receptor-like kinase OsESG1 from rice (Oryza sativa), and identified its involvement in early crown root (CR) development and drought response
OsESG1	Os01g0223800	LOC_Os01g12410	crown root	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Here, we identified an S-domain receptor-like kinase OsESG1 from rice (Oryza sativa), and identified its involvement in early crown root (CR) development and drought response
OsESG1	Os01g0223800	LOC_Os01g12410	stress response	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Results above suggested that OsESG1 may regulate CR initiation and development by controlling auxin response and distribution, and participate in stress response by regulating the activities of antioxidants and expressions of stress-regulated genes
OsETOL1	Os03g0294700	LOC_Os03g18360	ethylene	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice
OsETOL1	Os03g0294700	LOC_Os03g18360	drought	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice
OsETOL1	Os03g0294700	LOC_Os03g18360	submergence	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice
OsETOL1	Os03g0294700	LOC_Os03g18360	submergence tolerance	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice
OsETOL1	Os03g0294700	LOC_Os03g18360	drought tolerance	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice
OsETOL1	Os03g0294700	LOC_Os03g18360	drought stress	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice	Two allelic mutants of OsETOL1 showed increased resistance to drought stress at the panicle development stage.
OsETOL1	Os03g0294700	LOC_Os03g18360	abiotic stress	A homolog of ETHYLENE OVERPRODUCER, OsETOL1, differentially modulates drought and submergence tolerance in rice	The OsETOL1 transcript was differentially responsive to abiotic stresses.
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	awn	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Here, we found that the genes DROOPING LEAF (DL) and OsETTIN2 (OsETT2) are involved in awn development in the awned indica strain Kasalath
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	awn	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Genetic analyses and RNA-silencing experiments indicate that DL and OsETT2 act independently in awn formation, and that either gene alone is not sufficient for awn development
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	awn	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	OsETT2 is expressed in the awn primordium in the awned indica floret, but not in the awnless japonica floret except in the provascular bundle
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	awn	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	We hypothesize that loss of expression of OsETT2 in the awn primordium is probably associated with the failure of awn formation in japonica strains
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	leaf	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Here, we found that the genes DROOPING LEAF (DL) and OsETTIN2 (OsETT2) are involved in awn development in the awned indica strain Kasalath
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	vascular bundle	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	OsETT2 is expressed in the awn primordium in the awned indica floret, but not in the awnless japonica floret except in the provascular bundle
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	meristem	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	transcription factor	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	leaf	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Here, we found that the genes DROOPING LEAF (DL) and OsETTIN2 (OsETT2) are involved in awn development in the awned indica strain Kasalath
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	leaf	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	awn	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Here, we found that the genes DROOPING LEAF (DL) and OsETTIN2 (OsETT2) are involved in awn development in the awned indica strain Kasalath
OsETT2|OsETTIN2	Os01g0670800	LOC_Os01g48060	awn	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice
OsETTIN1|OsARF15	Os05g0563400	LOC_Os05g48870	carpel differentiation	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	We found that the OsMADS1 targets OsETTIN1 and OsETTIN2 redundantly ensure carpel differentiation.
OsEXO1	Os01g0777300	LOC_Os01g56940	cell cycle	Rice exonuclease-1 homologue, OsEXO1, that interacts with DNA polymerase lambda and RPA subunit proteins, is involved in cell proliferation	Inhibition of cell proliferation by removal of sucrose from the medium or by the addition of cell cycle inhibitors decreased OsEXO1 expression
OsEXO1	Os01g0777300	LOC_Os01g56940	meristem	Rice exonuclease-1 homologue, OsEXO1, that interacts with DNA polymerase lambda and RPA subunit proteins, is involved in cell proliferation	The transcript of OsEXO1 is highly expressed in meristematic tissues and panicles
OsEXO1	Os01g0777300	LOC_Os01g56940	panicle	Rice exonuclease-1 homologue, OsEXO1, that interacts with DNA polymerase lambda and RPA subunit proteins, is involved in cell proliferation	The transcript of OsEXO1 is highly expressed in meristematic tissues and panicles
OsExo70-F2	Os02g0505400	LOC_Os02g30230	resistance	Rice Exo70 interacts with a fungal effector, AVR-Pii, and is required for AVR-Pii-triggered immunity.	Simultaneous knockdown of OsExo70-F2 and F3 totally abrogated Pii immune receptor-dependent resistance, but had no effect on Pia- and Pik-dependent resistance
OsExo70-F2	Os02g0505400	LOC_Os02g30230	resistance	Rice Exo70 interacts with a fungal effector, AVR-Pii, and is required for AVR-Pii-triggered immunity.	Knockdown levels of OsExo70-F3 but not OsExo70-F2 correlated with reduction of Pii function, suggesting that OsExo70-F3 is specifically involved in Pii-dependent resistance
OsExo70-F3	Os04g0382200	LOC_Os04g31330	immunity	Rice Exo70 interacts with a fungal effector, AVR-Pii and is required for AVR-Pii-triggered immunity.	AVR-Pii interaction with OsExo70-F3 seems to play a crucial role in effector triggered immunity by Pii, suggesting the role of OsExo70 as decoy or helper in Pii/AVR-Pii interactions
OsExo70B1	Os01g0827500	LOC_Os01g61180	leaf	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	OsExo70B1 mainly expresses in leaf and shoot and its expression is induced by pathogen-associated molecular patterns (PAMPs) and rice blast fungus Magnaporthe oryzae (M
OsExo70B1	Os01g0827500	LOC_Os01g61180	shoot	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	OsExo70B1 mainly expresses in leaf and shoot and its expression is induced by pathogen-associated molecular patterns (PAMPs) and rice blast fungus Magnaporthe oryzae (M
OsExo70B1	Os01g0827500	LOC_Os01g61180	resistance	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice
OsExo70B1	Os01g0827500	LOC_Os01g61180	resistance	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	Knocking out OsExo70B1 results in significantly decreased resistance and defense responses to M
OsExo70B1	Os01g0827500	LOC_Os01g61180	disease	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice
OsExo70B1	Os01g0827500	LOC_Os01g61180	disease resistance	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice
OsExo70B1	Os01g0827500	LOC_Os01g61180	defense	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	Knocking out OsExo70B1 results in significantly decreased resistance and defense responses to M
OsExo70B1	Os01g0827500	LOC_Os01g61180	defense response	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	Knocking out OsExo70B1 results in significantly decreased resistance and defense responses to M
OsExo70B1	Os01g0827500	LOC_Os01g61180	blast	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	OsExo70B1 mainly expresses in leaf and shoot and its expression is induced by pathogen-associated molecular patterns (PAMPs) and rice blast fungus Magnaporthe oryzae (M
OsExo70B1	Os01g0827500	LOC_Os01g61180	magnaporthe oryzae	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice
OsExo70B1	Os01g0827500	LOC_Os01g61180	magnaporthe oryzae	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	OsExo70B1 mainly expresses in leaf and shoot and its expression is induced by pathogen-associated molecular patterns (PAMPs) and rice blast fungus Magnaporthe oryzae (M
OsExo70B1	Os01g0827500	LOC_Os01g61180	immunity	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	Taken together, our data demonstrate that OsExo70B1 functions as an important regulator in rice immunity
OsExo70B1	Os01g0827500	LOC_Os01g61180	Kinase	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	Furthermore, OsExo70B1 can interact with the receptor-like kinase OsCERK1, an essential component for chitin reception in rice
OsExo70B1	Os01g0827500	LOC_Os01g61180	kinase	OsExo70B1 Positively Regulates Disease Resistance to Magnaporthe oryzae in Rice	Furthermore, OsExo70B1 can interact with the receptor-like kinase OsCERK1, an essential component for chitin reception in rice
OsEXP1	Os04g0228400	LOC_Os04g15840	root	Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance	In both plants, the expression of OsEXP1, which encodes an expansin protein involved in plant growth,was concomitant with growth promotion in leaves instead of roots,in response to P
OsEXP1	Os04g0228400	LOC_Os04g15840	growth	Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance	In both plants, the expression of OsEXP1, which encodes an expansin protein involved in plant growth,was concomitant with growth promotion in leaves instead of roots,in response to P
OsEXPA10	Os04g0583500	LOC_Os04g49410	root	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.
OsEXPA10	Os04g0583500	LOC_Os04g49410	root	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	Immunostaining showed that OsEXPA10 was localized at all cells of the root tips
OsEXPA10	Os04g0583500	LOC_Os04g49410	root	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	In the presence of Al, knockout of OsEXPA10 did not alter the Al sensitivity evaluated by relative root elongation, but the root cell wall of knockout lines accumulated less Al compared to those of the wild-type rice
OsEXPA10	Os04g0583500	LOC_Os04g49410	root	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	Collectively, our results indicate that OsEXPA10 expressed in the root tips is required for the root cell elongation, but that the contribution of this gene to high Al tolerance in rice is small
OsEXPA10	Os04g0583500	LOC_Os04g49410	tolerance	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	Collectively, our results indicate that OsEXPA10 expressed in the root tips is required for the root cell elongation, but that the contribution of this gene to high Al tolerance in rice is small
OsEXPA10	Os04g0583500	LOC_Os04g49410	root elongation	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	In the presence of Al, knockout of OsEXPA10 did not alter the Al sensitivity evaluated by relative root elongation, but the root cell wall of knockout lines accumulated less Al compared to those of the wild-type rice
OsEXPA10	Os04g0583500	LOC_Os04g49410	Al tolerance	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	Collectively, our results indicate that OsEXPA10 expressed in the root tips is required for the root cell elongation, but that the contribution of this gene to high Al tolerance in rice is small
OsEXPA10	Os04g0583500	LOC_Os04g49410	cell wall	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	In the presence of Al, knockout of OsEXPA10 did not alter the Al sensitivity evaluated by relative root elongation, but the root cell wall of knockout lines accumulated less Al compared to those of the wild-type rice
OsEXPA10	Os04g0583500	LOC_Os04g49410	cell elongation	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.
OsEXPA10	Os04g0583500	LOC_Os04g49410	cell elongation	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	Knockout of OsEXPA10 resulted in a significant decrease in the cell elongation of the roots in the absence of Al
OsEXPA10	Os04g0583500	LOC_Os04g49410	cell elongation	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	Collectively, our results indicate that OsEXPA10 expressed in the root tips is required for the root cell elongation, but that the contribution of this gene to high Al tolerance in rice is small
OsEXPA10	Os04g0583500	LOC_Os04g49410	growth	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.
OsEXPA10	Os04g0583500	LOC_Os04g49410	growth	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Over expression of OsEXPA10 improved rice growth but also increased susceptibility to BPH infestation and blast attack, while knock-down OsEXPA10 gene expression resulted in reduced plant height and grain size, but also increased resistance to BPH and the blast pathogen
OsEXPA10	Os04g0583500	LOC_Os04g49410	resistance	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.
OsEXPA10	Os04g0583500	LOC_Os04g49410	resistance	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	OsEXPA10 gene coordinates the balance between rice development and biotic resistance
OsEXPA10	Os04g0583500	LOC_Os04g49410	resistance	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Over expression of OsEXPA10 improved rice growth but also increased susceptibility to BPH infestation and blast attack, while knock-down OsEXPA10 gene expression resulted in reduced plant height and grain size, but also increased resistance to BPH and the blast pathogen
OsEXPA10	Os04g0583500	LOC_Os04g49410	resistance	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	These results imply that OsEXPA10 mediates the balance between rice development and biotic resistance
OsEXPA10	Os04g0583500	LOC_Os04g49410	grain	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Over expression of OsEXPA10 improved rice growth but also increased susceptibility to BPH infestation and blast attack, while knock-down OsEXPA10 gene expression resulted in reduced plant height and grain size, but also increased resistance to BPH and the blast pathogen
OsEXPA10	Os04g0583500	LOC_Os04g49410	development	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	OsEXPA10 gene coordinates the balance between rice development and biotic resistance
OsEXPA10	Os04g0583500	LOC_Os04g49410	development	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	These results imply that OsEXPA10 mediates the balance between rice development and biotic resistance
OsEXPA10	Os04g0583500	LOC_Os04g49410	grain size	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Over expression of OsEXPA10 improved rice growth but also increased susceptibility to BPH infestation and blast attack, while knock-down OsEXPA10 gene expression resulted in reduced plant height and grain size, but also increased resistance to BPH and the blast pathogen
OsEXPA10	Os04g0583500	LOC_Os04g49410	blast	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Over expression of OsEXPA10 improved rice growth but also increased susceptibility to BPH infestation and blast attack, while knock-down OsEXPA10 gene expression resulted in reduced plant height and grain size, but also increased resistance to BPH and the blast pathogen
OsEXPA10	Os04g0583500	LOC_Os04g49410	stress	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.
OsEXPA10	Os04g0583500	LOC_Os04g49410	biotic stress	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.
OsEXPA10	Os04g0583500	LOC_Os04g49410	height	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Over expression of OsEXPA10 improved rice growth but also increased susceptibility to BPH infestation and blast attack, while knock-down OsEXPA10 gene expression resulted in reduced plant height and grain size, but also increased resistance to BPH and the blast pathogen
OsEXPA10	Os04g0583500	LOC_Os04g49410	plant height	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Over expression of OsEXPA10 improved rice growth but also increased susceptibility to BPH infestation and blast attack, while knock-down OsEXPA10 gene expression resulted in reduced plant height and grain size, but also increased resistance to BPH and the blast pathogen
OsEXPA10	Os04g0583500	LOC_Os04g49410	pathogen	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Over expression of OsEXPA10 improved rice growth but also increased susceptibility to BPH infestation and blast attack, while knock-down OsEXPA10 gene expression resulted in reduced plant height and grain size, but also increased resistance to BPH and the blast pathogen
OsEXPA17	Os06g0108600	LOC_Os06g01920	root hair	Root hair-specific expansins modulate root hair elongation in rice	We identified a gene encoding EXPA17 (OsEXPA17) from a rice mutant with short root hairs
OsEXPA17	Os06g0108600	LOC_Os06g01920	root hair	Root hair-specific expansins modulate root hair elongation in rice	Promoter::reporter transgenic lines exhibited exclusive OsEXPA17 expression in root hair cells
OsEXPA17	Os06g0108600	LOC_Os06g01920	root hair	Root hair-specific expansins modulate root hair elongation in rice	Suppression of OsEXPA17 by RNA interference further confirmed requirement for the gene in root hair elongation
OsEXPA17	Os06g0108600	LOC_Os06g01920	root hair	Root hair-specific expansins modulate root hair elongation in rice	Complementation of the OsEXPA17 mutant with other root hair EXPAs (OsEXPA30 and Arabidopsis EXPA7) can restore root hair elongation, indicating functional conservation of these root hair EXPAs in monocots and dicots
OsEXPA17	Os06g0108600	LOC_Os06g01920	root	Root hair-specific expansins modulate root hair elongation in rice	We identified a gene encoding EXPA17 (OsEXPA17) from a rice mutant with short root hairs
OsEXPA17	Os06g0108600	LOC_Os06g01920	root	Root hair-specific expansins modulate root hair elongation in rice	Promoter::reporter transgenic lines exhibited exclusive OsEXPA17 expression in root hair cells
OsEXPA17	Os06g0108600	LOC_Os06g01920	root	Root hair-specific expansins modulate root hair elongation in rice	Suppression of OsEXPA17 by RNA interference further confirmed requirement for the gene in root hair elongation
OsEXPA17	Os06g0108600	LOC_Os06g01920	root	Root hair-specific expansins modulate root hair elongation in rice	Complementation of the OsEXPA17 mutant with other root hair EXPAs (OsEXPA30 and Arabidopsis EXPA7) can restore root hair elongation, indicating functional conservation of these root hair EXPAs in monocots and dicots
OsEXPA30	Os10g0535900	LOC_Os10g39110	root hair	Root hair-specific expansins modulate root hair elongation in rice	Complementation of the OsEXPA17 mutant with other root hair EXPAs (OsEXPA30 and Arabidopsis EXPA7) can restore root hair elongation, indicating functional conservation of these root hair EXPAs in monocots and dicots
OsEXPA30	Os10g0535900	LOC_Os10g39110	root	Root hair-specific expansins modulate root hair elongation in rice	Complementation of the OsEXPA17 mutant with other root hair EXPAs (OsEXPA30 and Arabidopsis EXPA7) can restore root hair elongation, indicating functional conservation of these root hair EXPAs in monocots and dicots
OsEXPA7	Os03g0822000	LOC_Os03g60720	leaf	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	OsEXPA7 was highly expressed in the shoot apical meristem, root, and the leaf sheath
OsEXPA7	Os03g0822000	LOC_Os03g60720	leaf	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	Morphological analysis revealed structural alterations in the root and leaf vasculature of OsEXPA7 overexpressing (OX) lines
OsEXPA7	Os03g0822000	LOC_Os03g60720	root	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	Morphological analysis revealed structural alterations in the root and leaf vasculature of OsEXPA7 overexpressing (OX) lines
OsEXPA7	Os03g0822000	LOC_Os03g60720	shoot	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	OsEXPA7 was highly expressed in the shoot apical meristem, root, and the leaf sheath
OsEXPA7	Os03g0822000	LOC_Os03g60720	sheath	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	OsEXPA7 was highly expressed in the shoot apical meristem, root, and the leaf sheath
OsEXPA7	Os03g0822000	LOC_Os03g60720	salt	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	In this study, we evaluated the function of OsEXPA7 involved in salt stress tolerance
OsEXPA7	Os03g0822000	LOC_Os03g60720	salt	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	Phenotypic analysis showed that OsEXPA7 overexpression remarkably enhanced tolerance to salt stress
OsEXPA7	Os03g0822000	LOC_Os03g60720	salt	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	These results suggest that OsEXPA7 plays an important role in increasing salt stress tolerance by coordinating sodium transport, ROS scavenging, and cell-wall loosening
OsEXPA7	Os03g0822000	LOC_Os03g60720	tolerance	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	In this study, we evaluated the function of OsEXPA7 involved in salt stress tolerance
OsEXPA7	Os03g0822000	LOC_Os03g60720	tolerance	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	Phenotypic analysis showed that OsEXPA7 overexpression remarkably enhanced tolerance to salt stress
OsEXPA7	Os03g0822000	LOC_Os03g60720	tolerance	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	These results suggest that OsEXPA7 plays an important role in increasing salt stress tolerance by coordinating sodium transport, ROS scavenging, and cell-wall loosening
OsEXPA7	Os03g0822000	LOC_Os03g60720	potassium	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	OsEXPA7 overexpression resulted in decreased sodium ion (Na+) and accumulated potassium ion (K+) in the leaves and roots
OsEXPA7	Os03g0822000	LOC_Os03g60720	salt stress	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	In this study, we evaluated the function of OsEXPA7 involved in salt stress tolerance
OsEXPA7	Os03g0822000	LOC_Os03g60720	salt stress	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	Phenotypic analysis showed that OsEXPA7 overexpression remarkably enhanced tolerance to salt stress
OsEXPA7	Os03g0822000	LOC_Os03g60720	salt stress	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	These results suggest that OsEXPA7 plays an important role in increasing salt stress tolerance by coordinating sodium transport, ROS scavenging, and cell-wall loosening
OsEXPA7	Os03g0822000	LOC_Os03g60720	stress	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	In this study, we evaluated the function of OsEXPA7 involved in salt stress tolerance
OsEXPA7	Os03g0822000	LOC_Os03g60720	stress	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	Phenotypic analysis showed that OsEXPA7 overexpression remarkably enhanced tolerance to salt stress
OsEXPA7	Os03g0822000	LOC_Os03g60720	stress	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	These results suggest that OsEXPA7 plays an important role in increasing salt stress tolerance by coordinating sodium transport, ROS scavenging, and cell-wall loosening
OsEXPA7	Os03g0822000	LOC_Os03g60720	shoot apical meristem	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	OsEXPA7 was highly expressed in the shoot apical meristem, root, and the leaf sheath
OsEXPA7	Os03g0822000	LOC_Os03g60720	stress tolerance	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	In this study, we evaluated the function of OsEXPA7 involved in salt stress tolerance
OsEXPA7	Os03g0822000	LOC_Os03g60720	stress tolerance	Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice.	These results suggest that OsEXPA7 plays an important role in increasing salt stress tolerance by coordinating sodium transport, ROS scavenging, and cell-wall loosening
OsEXPA8	Os01g0248900	LOC_Os01g14650	primary root	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8 in rice plants yielded pleiotropic phenotypes of improved root system architecture (longer primary roots, more lateral roots and root hairs), increased plant height, enhanced leaf number and enlarged leaf size
OsEXPA8	Os01g0248900	LOC_Os01g14650	lateral root	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8 in rice plants yielded pleiotropic phenotypes of improved root system architecture (longer primary roots, more lateral roots and root hairs), increased plant height, enhanced leaf number and enlarged leaf size
OsEXPA8	Os01g0248900	LOC_Os01g14650	vascular bundle	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Further study indicated that the average cell length in both leaf and root vascular bundles was enhanced, and the cell growth in suspension cultures was increased, which revealed the cellular basis for OsEXPA8-mediated rice plant growth acceleration
OsEXPA8	Os01g0248900	LOC_Os01g14650	leaf	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8 in rice plants yielded pleiotropic phenotypes of improved root system architecture (longer primary roots, more lateral roots and root hairs), increased plant height, enhanced leaf number and enlarged leaf size
OsEXPA8	Os01g0248900	LOC_Os01g14650	leaf	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Further study indicated that the average cell length in both leaf and root vascular bundles was enhanced, and the cell growth in suspension cultures was increased, which revealed the cellular basis for OsEXPA8-mediated rice plant growth acceleration
OsEXPA8	Os01g0248900	LOC_Os01g14650	architecture	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8 in rice plants yielded pleiotropic phenotypes of improved root system architecture (longer primary roots, more lateral roots and root hairs), increased plant height, enhanced leaf number and enlarged leaf size
OsEXPA8	Os01g0248900	LOC_Os01g14650	architecture	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension
OsEXPA8	Os01g0248900	LOC_Os01g14650	cell wall	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Moreover, a prominent change in the wall polymer composition of suspension cells was observed, and Fourier-transform infrared (FTIR) spectra revealed a relative increase in the ratios of the polysaccharide/lignin content in cell wall compositions of OsEXPA8 overexpressors
OsEXPA8	Os01g0248900	LOC_Os01g14650	height	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8 in rice plants yielded pleiotropic phenotypes of improved root system architecture (longer primary roots, more lateral roots and root hairs), increased plant height, enhanced leaf number and enlarged leaf size
OsEXPA8	Os01g0248900	LOC_Os01g14650	growth	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	In this work, we investigated the possible biological role of the root-specific alpha-expansin gene OsEXPA8 in rice growth and development by generating transgenic plants
OsEXPA8	Os01g0248900	LOC_Os01g14650	growth	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Further study indicated that the average cell length in both leaf and root vascular bundles was enhanced, and the cell growth in suspension cultures was increased, which revealed the cellular basis for OsEXPA8-mediated rice plant growth acceleration
OsEXPA8	Os01g0248900	LOC_Os01g14650	growth	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Atomic force microscopy (AFM) technology revealed that average wall stiffness values for 35S::OsEXPA8 transgenic suspension-cultured cells decreased over six-fold compared to wild-type counterparts during different growth phases
OsEXPA8	Os01g0248900	LOC_Os01g14650	growth	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension
OsEXPA8	Os01g0248900	LOC_Os01g14650	root hair	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8 in rice plants yielded pleiotropic phenotypes of improved root system architecture (longer primary roots, more lateral roots and root hairs), increased plant height, enhanced leaf number and enlarged leaf size
OsEXPA8	Os01g0248900	LOC_Os01g14650	root	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	In this work, we investigated the possible biological role of the root-specific alpha-expansin gene OsEXPA8 in rice growth and development by generating transgenic plants
OsEXPA8	Os01g0248900	LOC_Os01g14650	root	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8 in rice plants yielded pleiotropic phenotypes of improved root system architecture (longer primary roots, more lateral roots and root hairs), increased plant height, enhanced leaf number and enlarged leaf size
OsEXPA8	Os01g0248900	LOC_Os01g14650	root	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Further study indicated that the average cell length in both leaf and root vascular bundles was enhanced, and the cell growth in suspension cultures was increased, which revealed the cellular basis for OsEXPA8-mediated rice plant growth acceleration
OsEXPA8	Os01g0248900	LOC_Os01g14650	root	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension	Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension
OsEXPB2	Os10g0555700	LOC_Os10g40710	leaf	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	A clear difference was observed between RNA interference (RNAi) lines and wild-type in root system architecture and plant height, and the suppression of OsEXPB2 resulted in a visible alteration of the width of the leaf blade
OsEXPB2	Os10g0555700	LOC_Os10g40710	root	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	The OsEXPB2 promoter contains conserved root hair-specific elements
OsEXPB2	Os10g0555700	LOC_Os10g40710	root	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	Analysis of spatial and temporal expression patterns demonstrated that OsEXPB2 was predominantly expressed in root of rice
OsEXPB2	Os10g0555700	LOC_Os10g40710	root	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	A clear difference was observed between RNA interference (RNAi) lines and wild-type in root system architecture and plant height, and the suppression of OsEXPB2 resulted in a visible alteration of the width of the leaf blade
OsEXPB2	Os10g0555700	LOC_Os10g40710	root	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	All these results suggest that OsEXPB2 is a root-predominant gene with a key role in root-hair formation and has the potential to be utilized in transgenic root breeding to improve abiotic stress tolerance
OsEXPB2	Os10g0555700	LOC_Os10g40710	tolerance	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	All these results suggest that OsEXPB2 is a root-predominant gene with a key role in root-hair formation and has the potential to be utilized in transgenic root breeding to improve abiotic stress tolerance
OsEXPB2	Os10g0555700	LOC_Os10g40710	abiotic stress	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	OsEXPB2 expression levels were up-regulated by abiotic stresses, such as phosphate or iron deficiency, and also suppressed by abscisic acid
OsEXPB2	Os10g0555700	LOC_Os10g40710	abiotic stress	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	All these results suggest that OsEXPB2 is a root-predominant gene with a key role in root-hair formation and has the potential to be utilized in transgenic root breeding to improve abiotic stress tolerance
OsEXPB2	Os10g0555700	LOC_Os10g40710	stress	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	All these results suggest that OsEXPB2 is a root-predominant gene with a key role in root-hair formation and has the potential to be utilized in transgenic root breeding to improve abiotic stress tolerance
OsEXPB2	Os10g0555700	LOC_Os10g40710	architecture	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	A clear difference was observed between RNA interference (RNAi) lines and wild-type in root system architecture and plant height, and the suppression of OsEXPB2 resulted in a visible alteration of the width of the leaf blade
OsEXPB2	Os10g0555700	LOC_Os10g40710	cell wall	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	Subcellular localization assay revealed that OsEXPB2 was localized in the cell wall
OsEXPB2	Os10g0555700	LOC_Os10g40710	breeding	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	All these results suggest that OsEXPB2 is a root-predominant gene with a key role in root-hair formation and has the potential to be utilized in transgenic root breeding to improve abiotic stress tolerance
OsEXPB2	Os10g0555700	LOC_Os10g40710	plant height	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	A clear difference was observed between RNA interference (RNAi) lines and wild-type in root system architecture and plant height, and the suppression of OsEXPB2 resulted in a visible alteration of the width of the leaf blade
OsEXPB2	Os10g0555700	LOC_Os10g40710	iron	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	OsEXPB2 expression levels were up-regulated by abiotic stresses, such as phosphate or iron deficiency, and also suppressed by abscisic acid
OsEXPB2	Os10g0555700	LOC_Os10g40710	biotic stress	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	OsEXPB2 expression levels were up-regulated by abiotic stresses, such as phosphate or iron deficiency, and also suppressed by abscisic acid
OsEXPB2	Os10g0555700	LOC_Os10g40710	biotic stress	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	All these results suggest that OsEXPB2 is a root-predominant gene with a key role in root-hair formation and has the potential to be utilized in transgenic root breeding to improve abiotic stress tolerance
OsEXPB2	Os10g0555700	LOC_Os10g40710	abscisic acid	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	OsEXPB2 expression levels were up-regulated by abiotic stresses, such as phosphate or iron deficiency, and also suppressed by abscisic acid
OsEXPB2	Os10g0555700	LOC_Os10g40710	stress tolerance	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	All these results suggest that OsEXPB2 is a root-predominant gene with a key role in root-hair formation and has the potential to be utilized in transgenic root breeding to improve abiotic stress tolerance
OsEXPB2	Os10g0555700	LOC_Os10g40710	phosphate	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	OsEXPB2 expression levels were up-regulated by abiotic stresses, such as phosphate or iron deficiency, and also suppressed by abscisic acid
OsEXPB2	Os10g0555700	LOC_Os10g40710	root hair	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	The OsEXPB2 promoter contains conserved root hair-specific elements
OsEXPB2	Os10g0555700	LOC_Os10g40710	root system architecture	OsEXPB2, a β-expansin gene, is involved in rice root system architecture	A clear difference was observed between RNA interference (RNAi) lines and wild-type in root system architecture and plant height, and the suppression of OsEXPB2 resulted in a visible alteration of the width of the leaf blade
OsEXPB3	Os10g0555900	LOC_Os10g40720	vegetative	Biochemical properties and localization of the beta-expansin OsEXPB3 in rice (Oryza sativa L.)	Using antibodies specific for OsEXPB3, a vegetative beta-expansin of rice (Oryza sativa L
OsEXPB3	Os10g0555900	LOC_Os10g40720	cell wall	Biochemical properties and localization of the beta-expansin OsEXPB3 in rice (Oryza sativa L.)	), we found that OsEXPB3 is tightly bound to the cell wall and, unlike alpha-expansins, cannot be solubilized with extraction buffer containing 1 M NaCl
OsEXPB3	Os10g0555900	LOC_Os10g40720	root	Biochemical properties and localization of the beta-expansin OsEXPB3 in rice (Oryza sativa L.)	Immunohistochemistry showed that OsEXPB3 is present in all regions of the coleoptile and root tissues tested
OsEXTL	Os10g0371000	LOC_Os10g22590	stem	Ectopic expression of a novel OsExtensin-like gene consistently enhances plant lodging resistance by regulating cell elongation and cell wall thickening in rice.	Despite different OsEXTL expression levels, two-promoter-driven OsEXTL-transgenic plants, compared to a rice cultivar and an empty vector, exhibited significantly reduced cell elongation in stem internodes, leading to relatively shorter plant heights by 7%-10%
OsEXTL	Os10g0371000	LOC_Os10g22590	cell elongation	Ectopic expression of a novel OsExtensin-like gene consistently enhances plant lodging resistance by regulating cell elongation and cell wall thickening in rice.	Despite different OsEXTL expression levels, two-promoter-driven OsEXTL-transgenic plants, compared to a rice cultivar and an empty vector, exhibited significantly reduced cell elongation in stem internodes, leading to relatively shorter plant heights by 7%-10%
OsEXTL	Os10g0371000	LOC_Os10g22590	plant height	Ectopic expression of a novel OsExtensin-like gene consistently enhances plant lodging resistance by regulating cell elongation and cell wall thickening in rice.	Despite different OsEXTL expression levels, two-promoter-driven OsEXTL-transgenic plants, compared to a rice cultivar and an empty vector, exhibited significantly reduced cell elongation in stem internodes, leading to relatively shorter plant heights by 7%-10%
OsF2KP2	Os03g0294200	LOC_Os03g18310	grain	Fructose-6-phosphate-2-kinase/Fructose-2,6-bisphosphatase Regulates Energy Metabolism and Synthesis of Storage Products in Developing Rice Endosperm.	 The results imply that OsF2KP2 participates in the glycolytic pathway by providing precursors and energy for synthesis of grain storage compounds
OsF2KP2	Os03g0294200	LOC_Os03g18310	endosperm	Fructose-6-phosphate-2-kinase/Fructose-2,6-bisphosphatase Regulates Energy Metabolism and Synthesis of Storage Products in Developing Rice Endosperm.	 Mutation of OsF2KP2 decreased Fru-2,6-P(2) content in endosperm cells, leading to drastically reduced phosphoenolpyruvate (PEP) and pyruvate contents and disordered glycolysis and energy metabolism
OsF2KP2	Os03g0294200	LOC_Os03g18310	energy metabolism	Fructose-6-phosphate-2-kinase/Fructose-2,6-bisphosphatase Regulates Energy Metabolism and Synthesis of Storage Products in Developing Rice Endosperm	Fructose-6-phosphate-2-kinase/Fructose-2,6-bisphosphatase Regulates Energy Metabolism and Synthesis of Storage Products in Developing Rice Endosperm
OsF2KP2	Os03g0294200	LOC_Os03g18310	glycolytic pathway	Fructose-6-phosphate-2-kinase/Fructose-2,6-bisphosphatase Regulates Energy Metabolism and Synthesis of Storage Products in Developing Rice Endosperm	The results imply that OsF2KP2 participates in the glycolytic pathway by providing precursors and energy for synthesis of grain storage compounds.
OsF2KP2	Os03g0294200	LOC_Os03g18310	grain storage compound	Fructose-6-phosphate-2-kinase/Fructose-2,6-bisphosphatase Regulates Energy Metabolism and Synthesis of Storage Products in Developing Rice Endosperm	The results imply that OsF2KP2 participates in the glycolytic pathway by providing precursors and energy for synthesis of grain storage compounds.
OsF3H03g|OsS5H2	Os03g0122300	LOC_Os03g03034	resistance	The OsmiR396-OsGRF8-OsF3H-flavonoid pathway mediates resistance to the brown planthopper in rice (Oryza sativa).	 A genetic functional analysis of OsF3H revealed its positive role in mediating both the flavonoid contents and BPH resistance
OsF3H03g|OsS5H2	Os03g0122300	LOC_Os03g03034	resistance	The OsmiR396-OsGRF8-OsF3H-flavonoid pathway mediates resistance to the brown planthopper in rice (Oryza sativa).	 And analysis of the genetic correlation between OsmiR396 and OsF3H showed that down-regulation of OsF3H complemented the BPH resistance characteristic and simultaneously decreased the flavonoid contents of the MIM396 plants
OsF3H03g|OsS5H2	Os03g0122300	LOC_Os03g03034	flavonoid	Discovery and Validation of a Novel Step Catalyzed by OsF3H in the Flavonoid Biosynthesis Pathway	Discovery and Validation of a Novel Step Catalyzed by OsF3H in the Flavonoid Biosynthesis Pathway
OsF3H03g|OsS5H2	Os03g0122300	LOC_Os03g03034	sa	Disruption of the primary salicylic acid hydroxylases in rice enhances broad-spectrum resistance against pathogens.	 SA levels were significantly increased in the oss5h mutants, while they were dramatically decreased in the OsS5H1 and OsS5H2 overexpression lines
OsF3H03g|OsS5H2	Os03g0122300	LOC_Os03g03034	SA	Disruption of the primary salicylic acid hydroxylases in rice enhances broad-spectrum resistance against pathogens.	 SA levels were significantly increased in the oss5h mutants, while they were dramatically decreased in the OsS5H1 and OsS5H2 overexpression lines
OsF3H03g|OsS5H2	Os03g0122300	LOC_Os03g03034	 sa 	Disruption of the primary salicylic acid hydroxylases in rice enhances broad-spectrum resistance against pathogens.	 SA levels were significantly increased in the oss5h mutants, while they were dramatically decreased in the OsS5H1 and OsS5H2 overexpression lines
OsF3H04g|OsSAH2	Os04g0581000	LOC_Os04g49194	resistance	Salicylic Acid Is Required for Broad-Spectrum Disease Resistance in Rice.	 Knockout OsSAH2 and OsSAH3 (sahKO) genes conferred enhanced resistance to both hemibiotrophic and necrotrophic pathogens, whereas overexpression of each OsSAH gene increased susceptibility to the pathogens
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	temperature	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	Furthermore, OsFAD2 enhanced tolerance to low temperature when overexpressed in rice at the vegetative stage
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	temperature	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	These results indicated that OsFAD2 is involved in fatty acid desaturation and maintenance of the membrane lipids balance in cells, and could improve the tolerance of yeast and rice to low temperature stress
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	cold tolerance	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	Heterologous expression of OsFAD2 enhanced the yeast cells cold tolerance capacity compared to wild-type yeast
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	cold tolerance	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	More importantly, the 35S::OsFAD2 plants showed significantly enhanced cold tolerance at the reproductive stage, increasing grain yield by 46% over controls in the greenhouse under cold conditions
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	vegetative	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	Furthermore, OsFAD2 enhanced tolerance to low temperature when overexpressed in rice at the vegetative stage
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	yield	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	More importantly, the 35S::OsFAD2 plants showed significantly enhanced cold tolerance at the reproductive stage, increasing grain yield by 46% over controls in the greenhouse under cold conditions
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	reproductive	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	More importantly, the 35S::OsFAD2 plants showed significantly enhanced cold tolerance at the reproductive stage, increasing grain yield by 46% over controls in the greenhouse under cold conditions
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	grain	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	More importantly, the 35S::OsFAD2 plants showed significantly enhanced cold tolerance at the reproductive stage, increasing grain yield by 46% over controls in the greenhouse under cold conditions
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	grain yield	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	More importantly, the 35S::OsFAD2 plants showed significantly enhanced cold tolerance at the reproductive stage, increasing grain yield by 46% over controls in the greenhouse under cold conditions
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	growth	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	In addition, when the OsFAD2 gene was transferred into an Arabidopsis thaliana fad2-1 mutant, it effectively restored wild-type fatty acid composition and growth characteristics
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	root	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	In situ hybridization showed that OsFAD2 mRNA accumulated in leaf mesophyll cells and in root epidermis cells when exposed to 15°C for 4 days in dark conditions
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	leaf	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	In situ hybridization showed that OsFAD2 mRNA accumulated in leaf mesophyll cells and in root epidermis cells when exposed to 15°C for 4 days in dark conditions
OsFAD2|OsFAD2-1	Os02g0716500	LOC_Os02g48560	grain	RNAi-mediated down-regulation of the expression of OsFAD2-1: effect on lipid accumulation and expression of lipid biosynthetic genes in the rice grain.	Here, we have undertaken further analysis of role of OsFAD2-1 in the developing rice grain
OsFAD3	Os12g0104400	LOC_Os12g01370	growth	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	The accumulation of the OsFAD3 mRNA in leaf tissues remained at quite low levels, both at normal growth temperatures and at chilling temperatures
OsFAD3	Os12g0104400	LOC_Os12g01370	seed	Identification and evaluation of omega-3 fatty acid desaturase genes for hyperfortifying alpha-linolenic acid in transgenic rice seed	The ALA contents in the seeds of endoplasmic reticulum (ER)-localized GmFAD3-1 and OsFAD3 overexpression lines increased from 0
OsFAD3	Os12g0104400	LOC_Os12g01370	seed	Identification and evaluation of omega-3 fatty acid desaturase genes for hyperfortifying alpha-linolenic acid in transgenic rice seed	Homologous OsFAD3 is more active than GmFAD3-1 in catalysing LA conversion to ALA in rice seeds
OsFAD3	Os12g0104400	LOC_Os12g01370	chilling	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	The accumulation of the OsFAD3 mRNA in leaf tissues remained at quite low levels, both at normal growth temperatures and at chilling temperatures
OsFAD3	Os12g0104400	LOC_Os12g01370	chilling	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	Similar temperature responses of the OsFAD3 gene were observed both in chilling- tolerant and in chilling-intolerant rice cultivars
OsFAD3	Os12g0104400	LOC_Os12g01370	leaf	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	The accumulation of the OsFAD3 mRNA in leaf tissues remained at quite low levels, both at normal growth temperatures and at chilling temperatures
OsFAD3	Os12g0104400	LOC_Os12g01370	temperature	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	In root tissues, a high level of the OsFAD3 mRNA was observed at 15 degrees C and 20 degrees C, with its level decreasing markedly at temperatures below 10 degrees C
OsFAD3	Os12g0104400	LOC_Os12g01370	temperature	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	The accumulation of the OsFAD3 mRNA in leaf tissues remained at quite low levels, both at normal growth temperatures and at chilling temperatures
OsFAD3	Os12g0104400	LOC_Os12g01370	temperature	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	Similar temperature responses of the OsFAD3 gene were observed both in chilling- tolerant and in chilling-intolerant rice cultivars
OsFAD3	Os12g0104400	LOC_Os12g01370	root	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	Expression of the OsFAD3 cDNA in tobacco hairy root tissues and subsequent analysis of fatty acid compositions demonstrated the activity of the microsome omega-3 fatty acid desaturase
OsFAD3	Os12g0104400	LOC_Os12g01370	root	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	The OsFAD3 mRNA was abundant in root tissues, but was hardly detectable in leaves
OsFAD3	Os12g0104400	LOC_Os12g01370	root	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase	In root tissues, a high level of the OsFAD3 mRNA was observed at 15 degrees C and 20 degrees C, with its level decreasing markedly at temperatures below 10 degrees C
OsFAD7	Os03g0290300	LOC_Os03g18070	seed	Identification and evaluation of omega-3 fatty acid desaturase genes for hyperfortifying alpha-linolenic acid in transgenic rice seed	Overexpression of ER-localized GmFAD3-2/3 and chloroplast-localized OsFAD7/8 had less effect on increasing the ALA content in rice seeds
OsFAD7	Os03g0290300	LOC_Os03g18070	chloroplast	Identification and evaluation of omega-3 fatty acid desaturase genes for hyperfortifying alpha-linolenic acid in transgenic rice seed	Overexpression of ER-localized GmFAD3-2/3 and chloroplast-localized OsFAD7/8 had less effect on increasing the ALA content in rice seeds
OsFAD8	Os07g0693800	LOC_Os07g49310	root	Characterization of a rice (Oryza sativa L.) gene encoding a temperature-dependent chloroplast omega-3 fatty acid desaturase	RNA in situ hybridization showed that the accumulation of Osfad8 mRNA was abundant in leaves but hardly detectable in roots
OsFAD8	Os07g0693800	LOC_Os07g49310	cold stress	Effects of low temperature stress on rice (Oryza sativa L.) plastid omega-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants	Fatty acid analysis of homozygous OsFAD8 T-DNA knockout mutant and wild type plants have exhibited changes in fatty acid composition after cold stress, thus confirming that OsFAD8 gene codes for omega-3 fatty acid desaturase activity at low temperature
OsFAD8	Os07g0693800	LOC_Os07g49310	cold stress	Effects of low temperature stress on rice (Oryza sativa L.) plastid omega-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants	Photosynthetic efficiency and recovery of OsFAD8 knockout mutants are significantly reduced after cold stress as compared to those of wild type plants
OsFAD8	Os07g0693800	LOC_Os07g49310	temperature	Characterization of a rice (Oryza sativa L.) gene encoding a temperature-dependent chloroplast omega-3 fatty acid desaturase	The Osfad8 transcript level in leaves was much higher at 15 degrees C than at normal temperature (25 degrees C)
OsFAD8	Os07g0693800	LOC_Os07g49310	temperature	Characterization of a rice (Oryza sativa L.) gene encoding a temperature-dependent chloroplast omega-3 fatty acid desaturase	These data suggest that Osfad8 encodes a temperature-dependent chloroplast omega-3 fatty acid desaturase
OsFAD8	Os07g0693800	LOC_Os07g49310	temperature	Effects of low temperature stress on rice (Oryza sativa L.) plastid omega-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants	Expression of two rice plastidial omega-3 desaturase genes, OsFAD7 and OsFAD8 under different temperatures has been investigated
OsFAD8	Os07g0693800	LOC_Os07g49310	temperature	Effects of low temperature stress on rice (Oryza sativa L.) plastid omega-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants	Transcript levels of OsFAD7 increased at high temperature; while those of OsFAD8 increased at low temperatures
OsFAD8	Os07g0693800	LOC_Os07g49310	temperature	Effects of low temperature stress on rice (Oryza sativa L.) plastid omega-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants	Fatty acid analysis of homozygous OsFAD8 T-DNA knockout mutant and wild type plants have exhibited changes in fatty acid composition after cold stress, thus confirming that OsFAD8 gene codes for omega-3 fatty acid desaturase activity at low temperature
OsFAD8	Os07g0693800	LOC_Os07g49310	temperature	Effects of low temperature stress on rice (Oryza sativa L.) plastid omega-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants	Characterization of OsFAD8 suggests that it has a functional role in maintaining levels of trienoic fatty acids and stress tolerance at low temperatures
OsFAD8	Os07g0693800	LOC_Os07g49310	temperature	Effects of low temperature stress on rice (Oryza sativa L.) plastid omega-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants	Effects of low temperature stress on rice (Oryza sativa L.) plastid omega-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants
OsFAD8	Os07g0693800	LOC_Os07g49310	chloroplast	Characterization of a rice (Oryza sativa L.) gene encoding a temperature-dependent chloroplast omega-3 fatty acid desaturase	A cDNA, designated Osfad8, encoding a chloroplast omega-3 fatty acid desaturase responsible for trienoic fatty acid formation, was isolated from the leaves of Oryza sativa L
OsFAD8	Os07g0693800	LOC_Os07g49310	chloroplast	Characterization of a rice (Oryza sativa L.) gene encoding a temperature-dependent chloroplast omega-3 fatty acid desaturase	These data suggest that Osfad8 encodes a temperature-dependent chloroplast omega-3 fatty acid desaturase
OsFAD8	Os07g0693800	LOC_Os07g49310	temperature	Rice mutants deficient in omega-3 fatty acid desaturase (FAD8) fail to acclimate to cold temperatures	At room temperature (28 C), osfad8 plants exhibited significant alterations in fatty acid (FA) unsaturation for all four investigated plastidic lipid classes
OsFAD8	Os07g0693800	LOC_Os07g49310	stress	Rice mutants deficient in omega-3 fatty acid desaturase (FAD8) fail to acclimate to cold temperatures	Taken together, our findings suggest that FA unsaturation by OsFAD8 is crucial for the acclimation of higher plants to low-temperature stress
OsFAMA	Os05g0586300	LOC_Os05g50900	stoma differentiation	Multiple transcriptional factors control stomata development in rice	OsFAMA/OsICE influences subsidiary mother cell asymmetric division and mature stoma differentiation.
OsFAMA	Os05g0586300	LOC_Os05g50900	cell fate transition	Multiple transcriptional factors control stomata development in rice	These results indicated that OsFAMA controlled the cell fate transition from GMCs to GCs and from SMCs to SCs and affected SMC asymmetrical division.
OsFAMA	Os05g0586300	LOC_Os05g50900	stomatal development	Multiple transcriptional factors control stomata development in rice	OsICE1 and OsICE2 interact with OsSPCH1, OsSPCH2, OsMUTE or OsFAMA to specify three cell fate transition steps during stomatal development
OsFBH1|POH1	Os08g0506700	LOC_Os08g39630	heading date	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 CRISPR/Cas9-generated knockout mutations of HBP1, but not POH1 mutations, promoted earlier flowering time; conversely, HBP1 and POH1 overexpression delayed flowering time in rice under long-day and short-day conditions by activating the expression of Hd1 and suppressing the expression of Early heading date 1 (Ehd1), Heading date 3a (Hd3a), and Rice Flowering locus T 1 (RFT1), thus controlling flowering time in rice
OsFBH1|POH1	Os08g0506700	LOC_Os08g39630	flowering time	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 CRISPR/Cas9-generated knockout mutations of HBP1, but not POH1 mutations, promoted earlier flowering time; conversely, HBP1 and POH1 overexpression delayed flowering time in rice under long-day and short-day conditions by activating the expression of Hd1 and suppressing the expression of Early heading date 1 (Ehd1), Heading date 3a (Hd3a), and Rice Flowering locus T 1 (RFT1), thus controlling flowering time in rice
OsFBH1|POH1	Os08g0506700	LOC_Os08g39630	flowering	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	 CRISPR/Cas9-generated knockout mutations of HBP1, but not POH1 mutations, promoted earlier flowering time; conversely, HBP1 and POH1 overexpression delayed flowering time in rice under long-day and short-day conditions by activating the expression of Hd1 and suppressing the expression of Early heading date 1 (Ehd1), Heading date 3a (Hd3a), and Rice Flowering locus T 1 (RFT1), thus controlling flowering time in rice
OsFBK1	Os01g0659900	LOC_Os01g47050	drought	Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach.	OsFBK1 was also functionally validated in susceptible PB1 rice cultivar and Arabidopsis for providing drought tolerance
OsFBK1	Os01g0659900	LOC_Os01g47050	tolerance	Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach.	OsFBK1 was also functionally validated in susceptible PB1 rice cultivar and Arabidopsis for providing drought tolerance
OsFBK1	Os01g0659900	LOC_Os01g47050	drought tolerance	Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach.	OsFBK1 was also functionally validated in susceptible PB1 rice cultivar and Arabidopsis for providing drought tolerance
OsFBK1	Os01g0659900	LOC_Os01g47050	root	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.
OsFBK1	Os01g0659900	LOC_Os01g47050	root	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	Rice transgenics of OsFBK1 displayed variations in anther and root secondary cell wall content; it could be corroborated by electron/confocal microscopy and lignification studies, with no apparent changes in auxin content/signalling pathway
OsFBK1	Os01g0659900	LOC_Os01g47050	root	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	Interestingly, the OsCCR knock-down transgenics also displayed a decrease in root and anther lignin depositions, suggesting that OsFBK1 plays a role in the development of rice anthers and roots by regulating the cellular levels of a key enzyme controlling lignification
OsFBK1	Os01g0659900	LOC_Os01g47050	anther	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.
OsFBK1	Os01g0659900	LOC_Os01g47050	anther	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	Rice transgenics of OsFBK1 displayed variations in anther and root secondary cell wall content; it could be corroborated by electron/confocal microscopy and lignification studies, with no apparent changes in auxin content/signalling pathway
OsFBK1	Os01g0659900	LOC_Os01g47050	anther	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	Interestingly, the OsCCR knock-down transgenics also displayed a decrease in root and anther lignin depositions, suggesting that OsFBK1 plays a role in the development of rice anthers and roots by regulating the cellular levels of a key enzyme controlling lignification
OsFBK1	Os01g0659900	LOC_Os01g47050	development	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	Interestingly, the OsCCR knock-down transgenics also displayed a decrease in root and anther lignin depositions, suggesting that OsFBK1 plays a role in the development of rice anthers and roots by regulating the cellular levels of a key enzyme controlling lignification
OsFBK1	Os01g0659900	LOC_Os01g47050	auxin	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	Rice transgenics of OsFBK1 displayed variations in anther and root secondary cell wall content; it could be corroborated by electron/confocal microscopy and lignification studies, with no apparent changes in auxin content/signalling pathway
OsFBK1	Os01g0659900	LOC_Os01g47050	cell wall	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.
OsFBK1	Os01g0659900	LOC_Os01g47050	cell wall	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	Rice transgenics of OsFBK1 displayed variations in anther and root secondary cell wall content; it could be corroborated by electron/confocal microscopy and lignification studies, with no apparent changes in auxin content/signalling pathway
OsFBK1	Os01g0659900	LOC_Os01g47050	lignin	The OsFBK1 E3 ligase subunit affects anther and root secondary cell wall thickenings by mediating turn-over of a cinnamoyl-CoA reductase.	Interestingly, the OsCCR knock-down transgenics also displayed a decrease in root and anther lignin depositions, suggesting that OsFBK1 plays a role in the development of rice anthers and roots by regulating the cellular levels of a key enzyme controlling lignification
OsFBK1	Os01g0659900	LOC_Os01g47050	root	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	We have identified the putative orthologue genes of the rice microRNA pathway for ORYZA SATIVA DAWDLE (OsDDL) and ORYZA SATIVA SERRATE (OsSE), and demonstrated that EP3 and OsFBK1 affect their transcript levels as well as those of CROWN ROOT DEFECT 1/ORYZA SATIVA Exportin-5 HASTY (CRD1/OsHST), ORYZA SATIVA DICER-LIKE 1 (OsDCL) and ORYZA SATIVA WEAVY LEAF1 (OsWAF1)
OsFBK1	Os01g0659900	LOC_Os01g47050	flower	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
OsFBK1	Os01g0659900	LOC_Os01g47050	pollen	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
OsFBK1	Os01g0659900	LOC_Os01g47050	grain	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
OsFBK1	Os01g0659900	LOC_Os01g47050	grain size	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
OsFBK1	Os01g0659900	LOC_Os01g47050	floral	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
OsFBK1	Os01g0659900	LOC_Os01g47050	architecture	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
OsFBK1	Os01g0659900	LOC_Os01g47050	floral organ	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
OsFBK1	Os01g0659900	LOC_Os01g47050	flower development	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
OsFBK1	Os01g0659900	LOC_Os01g47050	crown	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	We have identified the putative orthologue genes of the rice microRNA pathway for ORYZA SATIVA DAWDLE (OsDDL) and ORYZA SATIVA SERRATE (OsSE), and demonstrated that EP3 and OsFBK1 affect their transcript levels as well as those of CROWN ROOT DEFECT 1/ORYZA SATIVA Exportin-5 HASTY (CRD1/OsHST), ORYZA SATIVA DICER-LIKE 1 (OsDCL) and ORYZA SATIVA WEAVY LEAF1 (OsWAF1)
OsFBK1	Os01g0659900	LOC_Os01g47050	crown root	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	We have identified the putative orthologue genes of the rice microRNA pathway for ORYZA SATIVA DAWDLE (OsDDL) and ORYZA SATIVA SERRATE (OsSE), and demonstrated that EP3 and OsFBK1 affect their transcript levels as well as those of CROWN ROOT DEFECT 1/ORYZA SATIVA Exportin-5 HASTY (CRD1/OsHST), ORYZA SATIVA DICER-LIKE 1 (OsDCL) and ORYZA SATIVA WEAVY LEAF1 (OsWAF1)
OsFBK1	Os01g0659900	LOC_Os01g47050	plant architecture	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
OsFBK1	Os01g0659900	LOC_Os01g47050	plant architecture	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
OsFBK1	Os01g0659900	LOC_Os01g47050	organ size	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
OsFBK1	Os01g0659900	LOC_Os01g47050	floral organ number	The Rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Loss, reduction or gain of function lines for EP3 and OsFBK1, show that EP3 and OsFBK1 affect plant architecture, organ size, floral organ number and size, floral morphology, pollen viability, grain size and weight
OsFBK12	Os03g0171600	LOC_Os03g07530	leaf	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Here, we report that OsFBK12 (an F-box protein containing a Kelch repeat motif) interacts with S-ADENOSYL-l-METHIONINE SYNTHETASE1 (SAMS1) to regulate leaf senescence and seed size as well as grain number in rice (Oryza sativa)
OsFBK12	Os03g0171600	LOC_Os03g07530	leaf	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Phenotypically, overexpression of OsFBK12 led to a delay in leaf senescence and germination and increased seed size, whereas knockdown lines of either OsFBK12 or OsSAMS1 promoted the senescence program
OsFBK12	Os03g0171600	LOC_Os03g07530	leaf	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsFBK12	Os03g0171600	LOC_Os03g07530	leaf	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice
OsFBK12	Os03g0171600	LOC_Os03g07530	grain	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Here, we report that OsFBK12 (an F-box protein containing a Kelch repeat motif) interacts with S-ADENOSYL-l-METHIONINE SYNTHETASE1 (SAMS1) to regulate leaf senescence and seed size as well as grain number in rice (Oryza sativa)
OsFBK12	Os03g0171600	LOC_Os03g07530	grain	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsFBK12	Os03g0171600	LOC_Os03g07530	grain number	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Here, we report that OsFBK12 (an F-box protein containing a Kelch repeat motif) interacts with S-ADENOSYL-l-METHIONINE SYNTHETASE1 (SAMS1) to regulate leaf senescence and seed size as well as grain number in rice (Oryza sativa)
OsFBK12	Os03g0171600	LOC_Os03g07530	senescence	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Here, we report that OsFBK12 (an F-box protein containing a Kelch repeat motif) interacts with S-ADENOSYL-l-METHIONINE SYNTHETASE1 (SAMS1) to regulate leaf senescence and seed size as well as grain number in rice (Oryza sativa)
OsFBK12	Os03g0171600	LOC_Os03g07530	senescence	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Phenotypically, overexpression of OsFBK12 led to a delay in leaf senescence and germination and increased seed size, whereas knockdown lines of either OsFBK12 or OsSAMS1 promoted the senescence program
OsFBK12	Os03g0171600	LOC_Os03g07530	senescence	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsFBK12	Os03g0171600	LOC_Os03g07530	senescence	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice
OsFBK12	Os03g0171600	LOC_Os03g07530	seed	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Here, we report that OsFBK12 (an F-box protein containing a Kelch repeat motif) interacts with S-ADENOSYL-l-METHIONINE SYNTHETASE1 (SAMS1) to regulate leaf senescence and seed size as well as grain number in rice (Oryza sativa)
OsFBK12	Os03g0171600	LOC_Os03g07530	seed	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Phenotypically, overexpression of OsFBK12 led to a delay in leaf senescence and germination and increased seed size, whereas knockdown lines of either OsFBK12 or OsSAMS1 promoted the senescence program
OsFBK12	Os03g0171600	LOC_Os03g07530	seed size	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Here, we report that OsFBK12 (an F-box protein containing a Kelch repeat motif) interacts with S-ADENOSYL-l-METHIONINE SYNTHETASE1 (SAMS1) to regulate leaf senescence and seed size as well as grain number in rice (Oryza sativa)
OsFBK12	Os03g0171600	LOC_Os03g07530	seed size	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Phenotypically, overexpression of OsFBK12 led to a delay in leaf senescence and germination and increased seed size, whereas knockdown lines of either OsFBK12 or OsSAMS1 promoted the senescence program
OsFBK12	Os03g0171600	LOC_Os03g07530	grain size	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsFBK12	Os03g0171600	LOC_Os03g07530	ethylene	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	OsFBK12-RNA interference lines and OsSAMS1 overexpression lines showed increased ethylene levels, while OsFBK12-OX lines and OsSAMS1-RNA interference plants exhibited decreased ethylene
OsFBK12	Os03g0171600	LOC_Os03g07530	ethylene	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsFBN1	Os09g0133600	LOC_Os09g04790	chloroplast	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	The subcellular localization assay showed that the N-terminal chloroplast transport peptide (CTP) could facilitate the import of OsFBN1 into chloroplast
OsFBN1	Os09g0133600	LOC_Os09g04790	growth	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Collectively, these findings suggest the essential role of rice OsFBN1 in PG formation and lipid metabolism in chloroplasts, which coordinately regulate the growth and grain filling of the overexpressing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	panicle	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 increased the tiller number but decreased the panicle length, grain-filling percent and JA levels compared to the wild type and RNAi silencing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	grain	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Collectively, these findings suggest the essential role of rice OsFBN1 in PG formation and lipid metabolism in chloroplasts, which coordinately regulate the growth and grain filling of the overexpressing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	tiller	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 increased the tiller number but decreased the panicle length, grain-filling percent and JA levels compared to the wild type and RNAi silencing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	jasmonate	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.
OsFBN1	Os09g0133600	LOC_Os09g04790	stress	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.
OsFBN1	Os09g0133600	LOC_Os09g04790	stress	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 increased the tiller number but decreased the panicle length, grain-filling percent and JA levels compared to the wild type and RNAi silencing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	stress	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Collectively, these findings suggest the essential role of rice OsFBN1 in PG formation and lipid metabolism in chloroplasts, which coordinately regulate the growth and grain filling of the overexpressing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	ja	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 increased the tiller number but decreased the panicle length, grain-filling percent and JA levels compared to the wild type and RNAi silencing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	ja	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Moreover, overexpressing OsFBN1 affected the transcription levels of OsAOS2 in JA synthesis, OsTHF1, OsABC1K7 and OsPsaE in thylakoid stability and photosynthesis, OsABC1-4 and OsSPS2 in ubiquinone-metabolism, OsHDR, OsDXR, and OsFPPS in isoprenoid metabolism
OsFBN1	Os09g0133600	LOC_Os09g04790	grain filling	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Collectively, these findings suggest the essential role of rice OsFBN1 in PG formation and lipid metabolism in chloroplasts, which coordinately regulate the growth and grain filling of the overexpressing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	JA	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 increased the tiller number but decreased the panicle length, grain-filling percent and JA levels compared to the wild type and RNAi silencing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	JA	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Moreover, overexpressing OsFBN1 affected the transcription levels of OsAOS2 in JA synthesis, OsTHF1, OsABC1K7 and OsPsaE in thylakoid stability and photosynthesis, OsABC1-4 and OsSPS2 in ubiquinone-metabolism, OsHDR, OsDXR, and OsFPPS in isoprenoid metabolism
OsFBN1	Os09g0133600	LOC_Os09g04790	tiller number	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 increased the tiller number but decreased the panicle length, grain-filling percent and JA levels compared to the wild type and RNAi silencing lines under heat stress
OsFBN1	Os09g0133600	LOC_Os09g04790	grain-filling	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.
OsFBN1	Os09g0133600	LOC_Os09g04790	grain-filling	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Overexpressing OsFBN1 increased the tiller number but decreased the panicle length, grain-filling percent and JA levels compared to the wild type and RNAi silencing lines under heat stress
OsFBN5	Os04g0422000	LOC_Os04g34460	seedling	Conserved Function of Fibrillin5 in the Plastoquinone-9 Biosynthetic Pathway in Arabidopsis and Rice.	Overexpression of OsFBN5 complemented the seedling lethal phenotype of the Arabidopsis fbn5-1 mutant and restored PQ-9 and PC-8 (plastochromanol-8) to levels comparable to those in WT Arabidopsis plants
OsFBO10	Os11g0547000	LOC_Os11g34460	nucleus	OsCRY2 and OsFBO10 co-regulate photomorphogenesis and photoperiodic flowering in indica rice.	 OsCRY2 and OsFBO10 interacted in the nucleus and cytoplasm of the cell and cross-regulated the expression of each other
OsFBO10	Os11g0547000	LOC_Os11g34460	cytoplasm	OsCRY2 and OsFBO10 co-regulate photomorphogenesis and photoperiodic flowering in indica rice.	 OsCRY2 and OsFBO10 interacted in the nucleus and cytoplasm of the cell and cross-regulated the expression of each other
OsFBO10	Os11g0547000	LOC_Os11g34460	flowering	OsCRY2 and OsFBO10 co-regulate photomorphogenesis and photoperiodic flowering in indica rice.	OsCRY2 and OsFBO10 co-regulate photomorphogenesis and photoperiodic flowering in indica rice.
OsFBT4	Os02g0705300	LOC_Os02g47640	stress	Overexpression of a rice Tubby-like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses.	 Here, we investigated the role of OsFBT4 in abiotic stress signalling
OsFBT4	Os02g0705300	LOC_Os02g47640	stress	Overexpression of a rice Tubby-like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses.	 Overexpression of OsFBT4 caused upregulation of several ABA-regulated/independent stress-responsive genes at more advanced stages of growth, showing wide and intricate roles played by OsFBT4 in stress signalling
OsFBT4	Os02g0705300	LOC_Os02g47640	abiotic stress	Overexpression of a rice Tubby-like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses.	 Here, we investigated the role of OsFBT4 in abiotic stress signalling
OsFBT4	Os02g0705300	LOC_Os02g47640	abiotic stress	Overexpression of a rice Tubby-like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses.	 The OsFBT4 transcript was strongly upregulated in response to different abiotic stresses in rice, including exogenous ABA
OsFBT4	Os02g0705300	LOC_Os02g47640	ABA	Overexpression of a rice Tubby-like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses.	 The OsFBT4 transcript was strongly upregulated in response to different abiotic stresses in rice, including exogenous ABA
OsFBT4	Os02g0705300	LOC_Os02g47640	biotic stress	Overexpression of a rice Tubby-like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses.	 Here, we investigated the role of OsFBT4 in abiotic stress signalling
OsFBT4	Os02g0705300	LOC_Os02g47640	biotic stress	Overexpression of a rice Tubby-like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses.	 The OsFBT4 transcript was strongly upregulated in response to different abiotic stresses in rice, including exogenous ABA
OsFBT4	Os02g0705300	LOC_Os02g47640	plasma membrane	Overexpression of a rice Tubby-like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses.	 The OsFBT4 showed interaction with several OSKs (Oryza SKP1 proteins) and localized to the plasma membrane (PM)
OsFBX267	None	LOC_Os08g09466	height	Loss of Function of OsFBX267 and OsGA20ox2 in Rice Promotes Early Maturing and Semi-Dwarfism in Irradiated IWP and Genome-Edited Pusa Basmati-1	The loss of function of OsGA20ox2 and OsFBX267 in WP-22-2 resulted in reduced plant height as well as early flowering, and the same has been confirmed by editing OsGA20ox2 in the rice variety Pusa Basmati1 (PB1) using the CRISPR-Cas9 approach
OsFBX267	None	LOC_Os08g09466	plant height	Loss of Function of OsFBX267 and OsGA20ox2 in Rice Promotes Early Maturing and Semi-Dwarfism in Irradiated IWP and Genome-Edited Pusa Basmati-1	The loss of function of OsGA20ox2 and OsFBX267 in WP-22-2 resulted in reduced plant height as well as early flowering, and the same has been confirmed by editing OsGA20ox2 in the rice variety Pusa Basmati1 (PB1) using the CRISPR-Cas9 approach
OsFBX322	Os09g0344400	LOC_Os09g17540	leaf	Overexpression of rice F-box protein OsFBX322 confers increased sensitivity to gamma irradiation in Arabidopsis.	Transient expression of a GFP-OsFBX322 fusion protein in tobacco leaf epidermis indicated that OsFBX322 localized at the nucleus
OsFBX322	Os09g0344400	LOC_Os09g17540	defense	Overexpression of rice F-box protein OsFBX322 confers increased sensitivity to gamma irradiation in Arabidopsis.	These results suggest that OsFBX322 play the negative role in defense response to radiation in plants
OsFBX322	Os09g0344400	LOC_Os09g17540	defense response	Overexpression of rice F-box protein OsFBX322 confers increased sensitivity to gamma irradiation in Arabidopsis.	These results suggest that OsFBX322 play the negative role in defense response to radiation in plants
OsFBX322	Os09g0344400	LOC_Os09g17540	nucleus	Overexpression of rice F-box protein OsFBX322 confers increased sensitivity to gamma irradiation in Arabidopsis.	Transient expression of a GFP-OsFBX322 fusion protein in tobacco leaf epidermis indicated that OsFBX322 localized at the nucleus
OsFBX322	Os09g0344400	LOC_Os09g17540	epidermis	Overexpression of rice F-box protein OsFBX322 confers increased sensitivity to gamma irradiation in Arabidopsis.	Transient expression of a GFP-OsFBX322 fusion protein in tobacco leaf epidermis indicated that OsFBX322 localized at the nucleus
OsFbx352	Os10g0127900	LOC_Os10g03850	seed	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	This study isolated a gene (OsFbx352) from rice encoding an F-box domain protein and characterized its role in seed germination
OsFbx352	Os10g0127900	LOC_Os10g03850	seed	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	The transcripts of OsFbx352 were increased upon imbibition of rice seeds and the increase was markedly suppressed by glucose
OsFbx352	Os10g0127900	LOC_Os10g03850	seed	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	Germination of seeds with overexpression of OsFbx352 was less suppressed by glucose than that of wild-type seeds, while glucose had greater inhibition for germination of seeds with knockdown of OsFbx352 by RNA interference (RNAi) than that of wild-type seeds
OsFbx352	Os10g0127900	LOC_Os10g03850	seed	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	The differential response of germination of the transgenic and wild-type seeds to glucose may be accounted for by differences in ABA content among overexpressing, RNAi, and wild-type seeds such that overexpression of OsFbx352 and knockdown of OsFbx352 led to lower and higher ABA contents, respectively, than that of wild-type seeds in the presence of glucose
OsFbx352	Os10g0127900	LOC_Os10g03850	seed	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	These findings indicate that OsFbx352 plays a regulatory role in the regulation of glucose-induced suppression of seed germination by targeting ABA metabolism
OsFbx352	Os10g0127900	LOC_Os10g03850	seed	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice
OsFbx352	Os10g0127900	LOC_Os10g03850	seed germination	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	This study isolated a gene (OsFbx352) from rice encoding an F-box domain protein and characterized its role in seed germination
OsFbx352	Os10g0127900	LOC_Os10g03850	seed germination	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	These findings indicate that OsFbx352 plays a regulatory role in the regulation of glucose-induced suppression of seed germination by targeting ABA metabolism
OsFbx352	Os10g0127900	LOC_Os10g03850	seed germination	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice
OsFbx352	Os10g0127900	LOC_Os10g03850	ABA	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	The differential response of germination of the transgenic and wild-type seeds to glucose may be accounted for by differences in ABA content among overexpressing, RNAi, and wild-type seeds such that overexpression of OsFbx352 and knockdown of OsFbx352 led to lower and higher ABA contents, respectively, than that of wild-type seeds in the presence of glucose
OsFbx352	Os10g0127900	LOC_Os10g03850	ABA	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	Overexpression of OsFbx352 led to a reduction in expression of genes responsible for ABA synthesis (OsNced2, OsNced3) and an increase in expression of genes encoding ABA catabolism (OsAba-ox2, OsAba-ox3) in the presence of glucose
OsFbx352	Os10g0127900	LOC_Os10g03850	ABA	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	These findings indicate that OsFbx352 plays a regulatory role in the regulation of glucose-induced suppression of seed germination by targeting ABA metabolism
OsFD1	Os09g0540800	LOC_Os09g36910	resistance	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.
OsFD1	Os09g0540800	LOC_Os09g36910	resistance	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	In present study, we identified that Hd3a and OsFD1 expression is repressed by Xoo and JA, and validated that Hd3a and OsFD1 negatively regulate resistance to Xanthomonas oryzae pv
OsFD1	Os09g0540800	LOC_Os09g36910	resistance	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	hd3a and osfd1 mutants increase resistance to Xoo and Xoc, and activate JA responsive genes expression
OsFD1	Os09g0540800	LOC_Os09g36910	defense	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	However, whether Hd3a and OsFD1 play roles in defense is unclear
OsFD1	Os09g0540800	LOC_Os09g36910	defense	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	The functional confirmation of Hd3a and OsFD1 in rice defense makes them to be promising targets in molecular rice breeding
OsFD1	Os09g0540800	LOC_Os09g36910	breeding	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	The functional confirmation of Hd3a and OsFD1 in rice defense makes them to be promising targets in molecular rice breeding
OsFD1	Os09g0540800	LOC_Os09g36910	xoo	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	In present study, we identified that Hd3a and OsFD1 expression is repressed by Xoo and JA, and validated that Hd3a and OsFD1 negatively regulate resistance to Xanthomonas oryzae pv
OsFD1	Os09g0540800	LOC_Os09g36910	xoo	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	hd3a and osfd1 mutants increase resistance to Xoo and Xoc, and activate JA responsive genes expression
OsFD1	Os09g0540800	LOC_Os09g36910	ja	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	hd3a and osfd1 mutants increase resistance to Xoo and Xoc, and activate JA responsive genes expression
OsFD1	Os09g0540800	LOC_Os09g36910	flowering time	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	In rice, Hd3a, GF14 and OsFD1 proteins, forming florigen activation complex, are key components in flowering time regulation
OsFD1	Os09g0540800	LOC_Os09g36910	JA	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	hd3a and osfd1 mutants increase resistance to Xoo and Xoc, and activate JA responsive genes expression
OsFD1	Os09g0540800	LOC_Os09g36910	nucleus	Phosphorylation of OsFD1 by OsCIPK3 Promotes the Formation of RFT1-containing Florigen Activation Complex for Long-day Flowering in Rice	The calcineurin B-like-interacting protein kinase, OsCIPK3, directly interacts with OsFD1 and phosphorylates OsFD1, which could facilitate FAC to localize in the nucleus
OsFD1	Os09g0540800	LOC_Os09g36910	protein kinase	Phosphorylation of OsFD1 by OsCIPK3 Promotes the Formation of RFT1-containing Florigen Activation Complex for Long-day Flowering in Rice	The calcineurin B-like-interacting protein kinase, OsCIPK3, directly interacts with OsFD1 and phosphorylates OsFD1, which could facilitate FAC to localize in the nucleus
OsFD1	Os09g0540800	LOC_Os09g36910	flowering	Phosphorylation of OsFD1 by OsCIPK3 Promotes the Formation of RFT1-containing Florigen Activation Complex for Long-day Flowering in Rice	Phosphorylation of OsFD1 by OsCIPK3 Promotes the Formation of RFT1-containing Florigen Activation Complex for Long-day Flowering in Rice
OsFD1	Os09g0540800	LOC_Os09g36910	flowering	Phosphorylation of OsFD1 by OsCIPK3 Promotes the Formation of RFT1-containing Florigen Activation Complex for Long-day Flowering in Rice	We show that RFT1 forms a ternary FAC with 14-3-3 proteins and OsFD1 for flowering under LDs
OsFD1	Os09g0540800	LOC_Os09g36910	flowering	Phosphorylation of OsFD1 by OsCIPK3 Promotes the Formation of RFT1-containing Florigen Activation Complex for Long-day Flowering in Rice	Our results suggest that OsCIPK3 phosphorylates OsFD1 for RFT1-containing FAC formation to initiate flowering in rice under LDs
OsFD2	Os06g0720900	LOC_Os06g50600	transcription factor	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 Bimolecular fluorescence complementation and yeast two-hybrid assays revealed that GF14f directly interacts with the basic leucine zipper (bZIP) transcription factor, OsFD2
OsFD2	Os06g0720900	LOC_Os06g50600	spikelet	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 We found that OsFD2 also influences grain size by controlling cell expansion and division in the spikelet hull
OsFD2	Os06g0720900	LOC_Os06g50600	grain	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 We found that OsFD2 also influences grain size by controlling cell expansion and division in the spikelet hull
OsFD2	Os06g0720900	LOC_Os06g50600	grain size	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 We found that OsFD2 also influences grain size by controlling cell expansion and division in the spikelet hull
OsFD2	Os06g0720900	LOC_Os06g50600	cell expansion	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	 We found that OsFD2 also influences grain size by controlling cell expansion and division in the spikelet hull
OsFD4	Os08g0549600	LOC_Os08g43600	shoot	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem
OsFD4	Os08g0549600	LOC_Os08g43600	shoot	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	We identified OsFD4 as component of a FAC promoting flowering at the shoot apical meristem, downstream of OsFD1
OsFD4	Os08g0549600	LOC_Os08g43600	development	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	The osfd4 mutants are late flowering and delay expression of genes promoting inflorescence development
OsFD4	Os08g0549600	LOC_Os08g43600	floral	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem
OsFD4	Os08g0549600	LOC_Os08g43600	meristem	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem
OsFD4	Os08g0549600	LOC_Os08g43600	inflorescence	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	The osfd4 mutants are late flowering and delay expression of genes promoting inflorescence development
OsFD4	Os08g0549600	LOC_Os08g43600	shoot apical meristem	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem
OsFD4	Os08g0549600	LOC_Os08g43600	shoot apical meristem	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	We identified OsFD4 as component of a FAC promoting flowering at the shoot apical meristem, downstream of OsFD1
OsFD4	Os08g0549600	LOC_Os08g43600	flowering	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	We identified OsFD4 as component of a FAC promoting flowering at the shoot apical meristem, downstream of OsFD1
OsFD4	Os08g0549600	LOC_Os08g43600	flowering	OsFD4 promotes the rice floral transition via Florigen Activation Complex formation in the shoot apical meristem	The osfd4 mutants are late flowering and delay expression of genes promoting inflorescence development
OsFdC2	Os03g0685000	LOC_Os03g48040	chloroplast	Mutation of FdC2 gene encoding a ferredoxin-like protein with C-terminal extension causes yellow-green leaf phenotype in rice.	OsFdC2 was expressed most abundantly in leaves and its encoded protein was targeted to the chloroplast
OsFdC2	Os03g0685000	LOC_Os03g48040	map-based cloning	Mutation of FdC2 gene encoding a ferredoxin-like protein with C-terminal extension causes yellow-green leaf phenotype in rice.	Map-based cloning of this mutant resulted in identification of OsFdC2 gene (LOC_Os03g48040) showing high identity with Arabidopsis FdC2 gene (AT1G32550)
OsFdC2	Os03g0685000	LOC_Os03g48040	leaf	Mutation of FdC2 gene encoding a ferredoxin-like protein with C-terminal extension causes yellow-green leaf phenotype in rice	Mutation of FdC2 gene encoding a ferredoxin-like protein with C-terminal extension causes yellow-green leaf phenotype in rice
OsFdC2	Os03g0685000	LOC_Os03g48040	development	Functional Inactivation of Putative Photosynthetic Electron Acceptor Ferredoxin C2 (FdC2) Induces Delayed Heading Date and Decreased Photosynthetic Rate in Rice.	Our results suggest that OsFdC2 plays an important role in photosynthetic rate and development of heading date by regulating electron transfer and chlorophyll content in rice
OsFdC2	Os03g0685000	LOC_Os03g48040	heading date	Functional Inactivation of Putative Photosynthetic Electron Acceptor Ferredoxin C2 (FdC2) Induces Delayed Heading Date and Decreased Photosynthetic Rate in Rice.	Our results suggest that OsFdC2 plays an important role in photosynthetic rate and development of heading date by regulating electron transfer and chlorophyll content in rice
OsFDML1	Os02g0293300	LOC_Os02g19130	flower	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	Arabidopsis FDM1 is involved in RNA-directed DNA methylation and OsFDML1 regulates flower development
OsFDML1	Os02g0293300	LOC_Os02g19130	spikelet	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	The expression of OsFDML1 overlaps with that of OsMADS6 in the palea primordia and the ovule, and OsMADS6 directly promotes OsFDML1 expression through binding to regions containing putative CArG motifs within the OsFDML1 promoter during rice spikelet development
OsFDML1	Os02g0293300	LOC_Os02g19130	development	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	Arabidopsis FDM1 is involved in RNA-directed DNA methylation and OsFDML1 regulates flower development
OsFDML1	Os02g0293300	LOC_Os02g19130	development	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	The expression of OsFDML1 overlaps with that of OsMADS6 in the palea primordia and the ovule, and OsMADS6 directly promotes OsFDML1 expression through binding to regions containing putative CArG motifs within the OsFDML1 promoter during rice spikelet development
OsFDML1	Os02g0293300	LOC_Os02g19130	floral	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	Consistent with the phenotypes of osmads6 mutants, the osfdml1 mutants showed floral defects, including altered palea identity with lemma-like shape containing no marginal region of palea, increased numbers of stigmas and fused carpels, and meristem indeterminacy
OsFDML1	Os02g0293300	LOC_Os02g19130	floral	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	Moreover, transgenic plants overexpressing OsFDML1 displayed floral defects, such as abnormal paleae
OsFDML1	Os02g0293300	LOC_Os02g19130	meristem	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	Consistent with the phenotypes of osmads6 mutants, the osfdml1 mutants showed floral defects, including altered palea identity with lemma-like shape containing no marginal region of palea, increased numbers of stigmas and fused carpels, and meristem indeterminacy
OsFDML1	Os02g0293300	LOC_Os02g19130	palea	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	The expression of OsFDML1 overlaps with that of OsMADS6 in the palea primordia and the ovule, and OsMADS6 directly promotes OsFDML1 expression through binding to regions containing putative CArG motifs within the OsFDML1 promoter during rice spikelet development
OsFDML1	Os02g0293300	LOC_Os02g19130	palea	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	Consistent with the phenotypes of osmads6 mutants, the osfdml1 mutants showed floral defects, including altered palea identity with lemma-like shape containing no marginal region of palea, increased numbers of stigmas and fused carpels, and meristem indeterminacy
OsFDML1	Os02g0293300	LOC_Os02g19130	flower development	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	Arabidopsis FDM1 is involved in RNA-directed DNA methylation and OsFDML1 regulates flower development
OsFDML1	Os02g0293300	LOC_Os02g19130	spikelet development	OsMADS6 controls flower development by activating rice FACTOR OF DNA METHYLATION LIKE 1.	The expression of OsFDML1 overlaps with that of OsMADS6 in the palea primordia and the ovule, and OsMADS6 directly promotes OsFDML1 expression through binding to regions containing putative CArG motifs within the OsFDML1 promoter during rice spikelet development
OsFEN-1	Os05g0540100	LOC_Os05g46270	leaf	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues	In the shoot apex, OsFEN-1 mRNA was abundant in the shoot apical meristem, tiller bud, leaf primordia, ligule primordia and marginal meristem of young leaves
OsFEN-1	Os05g0540100	LOC_Os05g46270	meristem	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues	OsFEN-1 transcripts were expressed strongly in proliferating tissues such as root tips and young leaves that contain root apical meristem and marginal meristem, respectively
OsFEN-1	Os05g0540100	LOC_Os05g46270	meristem	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues	In the shoot apex, OsFEN-1 mRNA was abundant in the shoot apical meristem, tiller bud, leaf primordia, ligule primordia and marginal meristem of young leaves
OsFEN-1	Os05g0540100	LOC_Os05g46270	root	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues	OsFEN-1 transcripts were expressed strongly in proliferating tissues such as root tips and young leaves that contain root apical meristem and marginal meristem, respectively
OsFEN-1	Os05g0540100	LOC_Os05g46270	shoot apical meristem	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues	In the shoot apex, OsFEN-1 mRNA was abundant in the shoot apical meristem, tiller bud, leaf primordia, ligule primordia and marginal meristem of young leaves
OsFEN-1	Os05g0540100	LOC_Os05g46270	root apical meristem	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues	OsFEN-1 transcripts were expressed strongly in proliferating tissues such as root tips and young leaves that contain root apical meristem and marginal meristem, respectively
OsFEN-1	Os05g0540100	LOC_Os05g46270	shoot	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues	In the shoot apex, OsFEN-1 mRNA was abundant in the shoot apical meristem, tiller bud, leaf primordia, ligule primordia and marginal meristem of young leaves
OsFEN-1	Os05g0540100	LOC_Os05g46270	tiller	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues	In the shoot apex, OsFEN-1 mRNA was abundant in the shoot apical meristem, tiller bud, leaf primordia, ligule primordia and marginal meristem of young leaves
OsFEN-1	Os05g0540100	LOC_Os05g46270	growth	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues	Our results indicate that OsFEN-1 is expressed in tissues rich in proliferating cells, and its expression may be required for cell growth and organ formation
OsFER1	Os11g0106700	LOC_Os11g01530	reproductive	Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2)	OsFER2 mRNA levels in rice flag leaves and panicles at different reproductive stages were higher than OsFER1 mRNA levels
OsFER1	Os11g0106700	LOC_Os11g01530	panicle	Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2)	OsFER2 mRNA levels in rice flag leaves and panicles at different reproductive stages were higher than OsFER1 mRNA levels
OsFER2	Os12g0106000	LOC_Os12g01530	panicle	Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2)	OsFER2 mRNA levels in rice flag leaves and panicles at different reproductive stages were higher than OsFER1 mRNA levels
OsFER2	Os12g0106000	LOC_Os12g01530	iron	Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2)	Exposure to copper, Paraquat, SNP and excess iron led to accumulation of ferritin mRNA, remarkably of OsFER2
OsFER2	Os12g0106000	LOC_Os12g01530	reproductive	Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2)	OsFER2 mRNA levels in rice flag leaves and panicles at different reproductive stages were higher than OsFER1 mRNA levels
OsFER2	Os12g0106000	LOC_Os12g01530	resistance	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 OsFER2 expression is involved in rice resistance to M
OsFER2	Os12g0106000	LOC_Os12g01530	photosynthesis	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 The full-length ferritin OsFER2 and its transit peptide were localized to the chloroplast, the most Fe-rich organelle for photosynthesis
OsFER2	Os12g0106000	LOC_Os12g01530	cell death	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 OsFER2 knock-out in wild-type rice HY did not induce ROS and ferric ion (Fe(3+)) accumulation, lipid peroxidation and hypersensitive response (HR) cell death, and also downregulated the defense-related genes OsPAL1, OsPR1-b, OsRbohB, OsNADP-ME2-3, OsMEK2 and OsMPK1, and vacuolar membrane transporter OsVIT2 expression
OsFER2	Os12g0106000	LOC_Os12g01530	cell death	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 OsFER2 complementation in ΔOsfer2 knock-out mutants restored ROS and iron accumulation and HR cell death phenotypes during infection
OsFER2	Os12g0106000	LOC_Os12g01530	transporter	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 OsFER2 knock-out in wild-type rice HY did not induce ROS and ferric ion (Fe(3+)) accumulation, lipid peroxidation and hypersensitive response (HR) cell death, and also downregulated the defense-related genes OsPAL1, OsPR1-b, OsRbohB, OsNADP-ME2-3, OsMEK2 and OsMPK1, and vacuolar membrane transporter OsVIT2 expression
OsFER2	Os12g0106000	LOC_Os12g01530	iron	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 OsFER2 complementation in ΔOsfer2 knock-out mutants restored ROS and iron accumulation and HR cell death phenotypes during infection
OsFH1	Os01g0897700	LOC_Os01g67240	root hair	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa)	The mutant Osfh1 exhibited root-hair defects when roots were grown submerged in solution, and mutant roots produced normal root hairs in the air
OsFH1	Os01g0897700	LOC_Os01g67240	root	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa)	Subsequent analysis of two additional T-DNA mutants verified that OsFH1 is important for root-hair elongation
OsFH1	Os01g0897700	LOC_Os01g67240	root	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa)	Further studies revealed that the action of OsFH1 on root-hair growth is dependent on growth conditions
OsFH1	Os01g0897700	LOC_Os01g67240	root	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa)	The mutant Osfh1 exhibited root-hair defects when roots were grown submerged in solution, and mutant roots produced normal root hairs in the air
OsFH1	Os01g0897700	LOC_Os01g67240	root	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa)	This study shows that OsFH1 plays a significant role in root-hair elongation in a growth condition-dependent manner
OsFH1	Os01g0897700	LOC_Os01g67240	root	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa)	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa)
OsFH1	Os01g0897700	LOC_Os01g67240	growth	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa)	Further studies revealed that the action of OsFH1 on root-hair growth is dependent on growth conditions
OsFH1	Os01g0897700	LOC_Os01g67240	growth	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa)	This study shows that OsFH1 plays a significant role in root-hair elongation in a growth condition-dependent manner
OsFH15	Os09g0517600	LOC_Os09g34180	shoot	OsFH15, a class I formin, interacts with microfilaments and microtubules to regulate grain size via affecting cell expansion in rice.	OsFH15 was mainly expressed in shoot apical meristem (SAM), spikelets, spikelet hulls and seeds in rice
OsFH15	Os09g0517600	LOC_Os09g34180	spikelet	OsFH15, a class I formin, interacts with microfilaments and microtubules to regulate grain size via affecting cell expansion in rice.	OsFH15 was mainly expressed in shoot apical meristem (SAM), spikelets, spikelet hulls and seeds in rice
OsFH15	Os09g0517600	LOC_Os09g34180	meristem	OsFH15, a class I formin, interacts with microfilaments and microtubules to regulate grain size via affecting cell expansion in rice.	OsFH15 was mainly expressed in shoot apical meristem (SAM), spikelets, spikelet hulls and seeds in rice
OsFH15	Os09g0517600	LOC_Os09g34180	shoot apical meristem	OsFH15, a class I formin, interacts with microfilaments and microtubules to regulate grain size via affecting cell expansion in rice.	OsFH15 was mainly expressed in shoot apical meristem (SAM), spikelets, spikelet hulls and seeds in rice
OsFH3	Os10g0119300	LOC_Os10g02980	dwarf	OsFH3 Encodes a Type II Formin Required for Rice Morphogenesis.	 osfh3 osfh5 mutants were dwarf with more severe developmental defectiveness
OsFH3	Os10g0119300	LOC_Os10g02980	phosphatase	OsFH3 Encodes a Type II Formin Required for Rice Morphogenesis.	 Furthermore, its N-terminal phosphatase and tensin homolog domain played a key role in modulating OsFH3 localization at intersections of AF and punctate structures of microtubules, which differed from other reported plant formins
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	floral	Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice	Here, we identify a gain-of-function epi-allele (Epi-df) of rice (Oryza sativa) FIE1; this allele causes a dwarf stature and various floral defects that are inherited in a dominant fashion
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	dwarf	Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice	Here, we identify a gain-of-function epi-allele (Epi-df) of rice (Oryza sativa) FIE1; this allele causes a dwarf stature and various floral defects that are inherited in a dominant fashion
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	endosperm	Expression, imprinting, and evolution of rice homologs of the polycomb group genes	OsFIE1 is expressed only in endosperm; the maternal copy is expressed while the paternal copy is not active
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	seed	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	seed	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.	The RNAi of OsFIE1 and homozygous T-DNA insertion mutant osfie1 led to smaller seed, delayed embryo development, smaller aleurone layer cell, and decreased seed set rate
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	seed	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.	OsFIE1 specifically expressed in endosperm, and mRNA of OsFIE1 also enriched in inner seed coat with the corresponding PcG members of OsiEZ1 and OsCLF
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	seed	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.	Meanwhile, the contents of seed storage proteins and Ile, Leu, and Val were decreased, accompanied with the down-regulation of multiple transcription factors, storage protein synthesis and amino acid metabolism related genes in OsFIE1-RNAi lines and osfie1
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	development	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	transcription factor	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.	Meanwhile, the contents of seed storage proteins and Ile, Leu, and Val were decreased, accompanied with the down-regulation of multiple transcription factors, storage protein synthesis and amino acid metabolism related genes in OsFIE1-RNAi lines and osfie1
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	seed development	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.	Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3.
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	growth	Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development	The newly evolved N-terminal tail of OsFIE1 was probably not the cause of the adverse effects on vegetative growth
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	development	Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development	The mutant osfie1 produced smaller seeds and displayed reduced dormancy, indicating that OsFIE1 predominantly functions in late seed development
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	seed	Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development	The mutant osfie1 produced smaller seeds and displayed reduced dormancy, indicating that OsFIE1 predominantly functions in late seed development
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	vegetative	Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development	The newly evolved N-terminal tail of OsFIE1 was probably not the cause of the adverse effects on vegetative growth
OsFIE1|Epi-df	Os08g0137250	LOC_Os08g04290	seed development	Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development	The mutant osfie1 produced smaller seeds and displayed reduced dormancy, indicating that OsFIE1 predominantly functions in late seed development
OsFIE2	Os08g0137100	LOC_Os08g04270	anther	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Both the OsFIE2 and OsEZ11 genes are strongly expressed in leaf and stem compared to other tissues, including root, anther, ovary, and ovule
OsFIE2	Os08g0137100	LOC_Os08g04270	growth	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size
OsFIE2	Os08g0137100	LOC_Os08g04270	endosperm	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Our results suggest that OsFIE2-polycomb complex positively regulates rice endosperm development and grain filling via a mechanism highly different from that in Arabidopsis
OsFIE2	Os08g0137100	LOC_Os08g04270	seed	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Genetic studies showed that a reduction of OsFIE2 expression led to smaller seeds, partially filled seeds, and partial loss of seed dormancy
OsFIE2	Os08g0137100	LOC_Os08g04270	seed	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis
OsFIE2	Os08g0137100	LOC_Os08g04270	transcription factor	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	The H3K27me3 modification and gene expression in a key helix-loop-helix transcription factor is shown to be regulated by OsFIE2
OsFIE2	Os08g0137100	LOC_Os08g04270	root	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Both the OsFIE2 and OsEZ11 genes are strongly expressed in leaf and stem compared to other tissues, including root, anther, ovary, and ovule
OsFIE2	Os08g0137100	LOC_Os08g04270	grain filling	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Our results suggest that OsFIE2-polycomb complex positively regulates rice endosperm development and grain filling via a mechanism highly different from that in Arabidopsis
OsFIE2	Os08g0137100	LOC_Os08g04270	grain filling	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis
OsFIE2	Os08g0137100	LOC_Os08g04270	seed	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Importantly, they produced bigger seed than the wild type, indicating that OsFIE2 may play an important role in seed size
OsFIE2	Os08g0137100	LOC_Os08g04270	seed	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size
OsFIE2	Os08g0137100	LOC_Os08g04270	starch	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Gene expression and proteomics analyses found that the starch synthesis rate limiting step enzyme and multiple storage proteins are down-regulated in OsFIE2 reduction lines
OsFIE2	Os08g0137100	LOC_Os08g04270	grain	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Our results suggest that OsFIE2-polycomb complex positively regulates rice endosperm development and grain filling via a mechanism highly different from that in Arabidopsis
OsFIE2	Os08g0137100	LOC_Os08g04270	grain	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis
OsFIE2	Os08g0137100	LOC_Os08g04270	stem	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Both the OsFIE2 and OsEZ11 genes are strongly expressed in leaf and stem compared to other tissues, including root, anther, ovary, and ovule
OsFIE2	Os08g0137100	LOC_Os08g04270	stem	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	We further examined whether OsFIE2 interacted with OsEZ1 using a yeast two-hybrid system
OsFIE2	Os08g0137100	LOC_Os08g04270	leaf	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Both the OsFIE2 and OsEZ11 genes are strongly expressed in leaf and stem compared to other tissues, including root, anther, ovary, and ovule
OsFIE2	Os08g0137100	LOC_Os08g04270	seed development	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis
OsFIE2	Os08g0137100	LOC_Os08g04270	seed size	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Importantly, they produced bigger seed than the wild type, indicating that OsFIE2 may play an important role in seed size
OsFIE2	Os08g0137100	LOC_Os08g04270	seed size	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size
OsFIE2	Os08g0137100	LOC_Os08g04270	endosperm	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	In this study, the function of the rice fertilization-independent endosperm gene OsFIE2, which expresses a protein homologous to the Arabidopsis Polycomb protein FIE, was characterized
OsFIE2	Os08g0137100	LOC_Os08g04270	dormancy	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis	Genetic studies showed that a reduction of OsFIE2 expression led to smaller seeds, partially filled seeds, and partial loss of seed dormancy
OsFIE2	Os08g0137100	LOC_Os08g04270	grain	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.
OsFIE2	Os08g0137100	LOC_Os08g04270	grain	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Taken together, these results indicate that OsFIE2 plays an important role in the regulation of plant height and grain yield in rice
OsFIE2	Os08g0137100	LOC_Os08g04270	grain yield	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.
OsFIE2	Os08g0137100	LOC_Os08g04270	grain yield	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Taken together, these results indicate that OsFIE2 plays an important role in the regulation of plant height and grain yield in rice
OsFIE2	Os08g0137100	LOC_Os08g04270	yield	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.
OsFIE2	Os08g0137100	LOC_Os08g04270	yield	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Taken together, these results indicate that OsFIE2 plays an important role in the regulation of plant height and grain yield in rice
OsFIE2	Os08g0137100	LOC_Os08g04270	cytoplasm	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	OsFIE2 is expressed in most tissues and the coded protein localizes in both nucleus and cytoplasm
OsFIE2	Os08g0137100	LOC_Os08g04270	height	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.
OsFIE2	Os08g0137100	LOC_Os08g04270	height	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Taken together, these results indicate that OsFIE2 plays an important role in the regulation of plant height and grain yield in rice
OsFIE2	Os08g0137100	LOC_Os08g04270	plant height	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.
OsFIE2	Os08g0137100	LOC_Os08g04270	plant height	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	Taken together, these results indicate that OsFIE2 plays an important role in the regulation of plant height and grain yield in rice
OsFIE2	Os08g0137100	LOC_Os08g04270	nucleus	Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.	OsFIE2 is expressed in most tissues and the coded protein localizes in both nucleus and cytoplasm
OsFIE2	Os08g0137100	LOC_Os08g04270	development	Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development	The CRISPR/Cas9-derived mutant osfie2 exhibited impaired cellularization of the endosperm, which suggested that OsFIE2 is indispensable for early seed development as a positive regulator of cellularization
OsFIE2	Os08g0137100	LOC_Os08g04270	seed	Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development	The CRISPR/Cas9-derived mutant osfie2 exhibited impaired cellularization of the endosperm, which suggested that OsFIE2 is indispensable for early seed development as a positive regulator of cellularization
OsFIE2	Os08g0137100	LOC_Os08g04270	seed development	Functional divergence of two duplicated Fertilization Independent Endosperm genes in rice with respect to seed development	The CRISPR/Cas9-derived mutant osfie2 exhibited impaired cellularization of the endosperm, which suggested that OsFIE2 is indispensable for early seed development as a positive regulator of cellularization
OsFIGNL1	Os12g0443800	LOC_Os12g25720	pollen	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Here, we isolated and characterized the rice OsFIGNL1 (OsFidgetin-like 1) gene, encoding a conserved AAA-ATPase, and explored its function and importance in male meiosis and pollen formation
OsFIGNL1	Os12g0443800	LOC_Os12g25720	pollen	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	The rice Osfignl1 mutant exhibited normal vegetative growth, but failed to produce seeds and displayed pollen abortion phenotype
OsFIGNL1	Os12g0443800	LOC_Os12g25720	anther	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Phenotypic comparisons between the wild-type and Osfignl1 mutant demonstrated that OsFIGNL1 is required for anther development, and that the recessive mutation of this gene causes male sterility in rice
OsFIGNL1	Os12g0443800	LOC_Os12g25720	anther	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Taken together, our results suggest that OsFIGNL1 plays an important role in regulation of male meiosis and anther development
OsFIGNL1	Os12g0443800	LOC_Os12g25720	sterility	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Phenotypic comparisons between the wild-type and Osfignl1 mutant demonstrated that OsFIGNL1 is required for anther development, and that the recessive mutation of this gene causes male sterility in rice
OsFIGNL1	Os12g0443800	LOC_Os12g25720	sterility	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Complementation and CRISPR/Cas9 experiments demonstrated that wild-type OsFIGNL1 is responsible for the male sterility phenotype
OsFIGNL1	Os12g0443800	LOC_Os12g25720	development	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Taken together, our results suggest that OsFIGNL1 plays an important role in regulation of male meiosis and anther development
OsFIGNL1	Os12g0443800	LOC_Os12g25720	vegetative	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	The rice Osfignl1 mutant exhibited normal vegetative growth, but failed to produce seeds and displayed pollen abortion phenotype
OsFIGNL1	Os12g0443800	LOC_Os12g25720	meiosis	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Here, we isolated and characterized the rice OsFIGNL1 (OsFidgetin-like 1) gene, encoding a conserved AAA-ATPase, and explored its function and importance in male meiosis and pollen formation
OsFIGNL1	Os12g0443800	LOC_Os12g25720	meiosis	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Male meiosis in the Osfignl1 mutant exhibited abnormal chromosome behavior, including chromosome bridges and multivalent chromosomes at diakinesis, lagging chromosomes, and chromosome fragments during meiosis
OsFIGNL1	Os12g0443800	LOC_Os12g25720	meiosis	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Taken together, our results suggest that OsFIGNL1 plays an important role in regulation of male meiosis and anther development
OsFIGNL1	Os12g0443800	LOC_Os12g25720	anther development	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Phenotypic comparisons between the wild-type and Osfignl1 mutant demonstrated that OsFIGNL1 is required for anther development, and that the recessive mutation of this gene causes male sterility in rice
OsFIGNL1	Os12g0443800	LOC_Os12g25720	anther development	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Taken together, our results suggest that OsFIGNL1 plays an important role in regulation of male meiosis and anther development
OsFIGNL1	Os12g0443800	LOC_Os12g25720	male sterility	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Phenotypic comparisons between the wild-type and Osfignl1 mutant demonstrated that OsFIGNL1 is required for anther development, and that the recessive mutation of this gene causes male sterility in rice
OsFIGNL1	Os12g0443800	LOC_Os12g25720	male sterility	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Complementation and CRISPR/Cas9 experiments demonstrated that wild-type OsFIGNL1 is responsible for the male sterility phenotype
OsFIP	Os06g0474200	LOC_Os06g27970	pollen	The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice.	Knocking out of OsFIP results in early degeneration of microspores at the vacuolated pollen stage and simultaneously causes abnormal meiosis in prophase I
OsFIP	Os06g0474200	LOC_Os06g27970	panicle	The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice.	We further analyzed the profile of rice m6A modification during sporogenesis in both WT and OsFIP loss-of-function plants, and identified a rice panicle specific m6A modification motif &quot;UGWAMH&quot;
OsFIP	Os06g0474200	LOC_Os06g27970	meiosis	The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice.	Knocking out of OsFIP results in early degeneration of microspores at the vacuolated pollen stage and simultaneously causes abnormal meiosis in prophase I
OsFIP	Os06g0474200	LOC_Os06g27970	methyltransferase	The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice.	The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice.
OsFIP	Os06g0474200	LOC_Os06g27970	methyltransferase	The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice.	In this study, we reported that OsFIP and OsMTA2 are the components of m6A RNA methyltransferase complex in rice and uncovered a previously unknown function of m6A RNA methylation in regulation of plant sporogenesis
OsFKBP12	Os02g0760300	LOC_Os02g52290	abiotic stress	A Rice Immunophilin Homolog, OsFKBP12, Is a Negative Regulator of Both Biotic and Abiotic Stress Responses	Therefore, OsFKBP12 probably also plays negative regulatory roles at the convergence of biotic and abiotic stress response pathways in higher plants
OsFKBP12	Os02g0760300	LOC_Os02g52290	stress	A Rice Immunophilin Homolog, OsFKBP12, Is a Negative Regulator of Both Biotic and Abiotic Stress Responses	Therefore, OsFKBP12 probably also plays negative regulatory roles at the convergence of biotic and abiotic stress response pathways in higher plants
OsFKBP12	Os02g0760300	LOC_Os02g52290	biotic stress	A Rice Immunophilin Homolog, OsFKBP12, Is a Negative Regulator of Both Biotic and Abiotic Stress Responses	Therefore, OsFKBP12 probably also plays negative regulatory roles at the convergence of biotic and abiotic stress response pathways in higher plants
OsFKBP12	Os02g0760300	LOC_Os02g52290	stress response	A Rice Immunophilin Homolog, OsFKBP12, Is a Negative Regulator of Both Biotic and Abiotic Stress Responses	Therefore, OsFKBP12 probably also plays negative regulatory roles at the convergence of biotic and abiotic stress response pathways in higher plants
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	oxidative	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	Transgenic Arabidopsis and transgenic rice plants that constitutively expressed OsFKBP16-3 exhibited increased tolerance to salinity, drought and oxidative stresses, but showed no change in growth or phenotype, compared with vector control plants, when grown under non-stressed conditions
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	salt	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	OsFKBP16-3 was mainly expressed in rice leaf tissues and was upregulated by various abiotic stresses, including salt, drought, high light, hydrogen peroxide, heat and methyl viologen
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	growth	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	Transgenic Arabidopsis and transgenic rice plants that constitutively expressed OsFKBP16-3 exhibited increased tolerance to salinity, drought and oxidative stresses, but showed no change in growth or phenotype, compared with vector control plants, when grown under non-stressed conditions
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	leaf	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	OsFKBP16-3 was mainly expressed in rice leaf tissues and was upregulated by various abiotic stresses, including salt, drought, high light, hydrogen peroxide, heat and methyl viologen
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	salinity	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	Transgenic Arabidopsis and transgenic rice plants that constitutively expressed OsFKBP16-3 exhibited increased tolerance to salinity, drought and oxidative stresses, but showed no change in growth or phenotype, compared with vector control plants, when grown under non-stressed conditions
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	abiotic stress	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	Here, we characterized rice OsFKBP16-3 and examined the role of this gene in the regulation of abiotic stress in plants
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	abiotic stress	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	OsFKBP16-3 was mainly expressed in rice leaf tissues and was upregulated by various abiotic stresses, including salt, drought, high light, hydrogen peroxide, heat and methyl viologen
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	chloroplast	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	The chloroplast localization of OsFKBP16-3-GFP was confirmed through the transient expression of OsFKBP16-3 in Nicotiana benthamiana leaves
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	drought	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	OsFKBP16-3 was mainly expressed in rice leaf tissues and was upregulated by various abiotic stresses, including salt, drought, high light, hydrogen peroxide, heat and methyl viologen
OsFKBP16-3	Os08g0541400	LOC_Os08g42850	drought	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice	Transgenic Arabidopsis and transgenic rice plants that constitutively expressed OsFKBP16-3 exhibited increased tolerance to salinity, drought and oxidative stresses, but showed no change in growth or phenotype, compared with vector control plants, when grown under non-stressed conditions
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	abiotic stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	 Expression of OsFKBP20-1b was highly upregulated under various abiotic stresses
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	abiotic stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	 Moreover genetic analysis revealed that OsFKBP20-1b positively affected transcription and pre-mRNA splicing of stress-responsive genes under abiotic stress conditions
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	 Moreover genetic analysis revealed that OsFKBP20-1b positively affected transcription and pre-mRNA splicing of stress-responsive genes under abiotic stress conditions
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	biotic stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	 Expression of OsFKBP20-1b was highly upregulated under various abiotic stresses
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	biotic stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	 Moreover genetic analysis revealed that OsFKBP20-1b positively affected transcription and pre-mRNA splicing of stress-responsive genes under abiotic stress conditions
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	stress response	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	ABA	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	ABA	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.	 OsFKBP20-1b facilitates the splicing of mRNAs with retained introns after ABA treatment; some of these mRNAs are translatable and encode functional transcriptional regulators of stress-responsive genes
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	ABA	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.	 In addition, interacting proteins, OsSR34 and OsSR45, regulate the splicing of the same retained introns as OsFKBP20-1b after ABA treatment
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	abscisic acid	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.	 We determined the AS landscape of wild-type and osfkbp20-1b knockout plants upon abscisic acid (ABA) treatment by transcriptome deep sequencing
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	transcriptional regulator	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.	 OsFKBP20-1b facilitates the splicing of mRNAs with retained introns after ABA treatment; some of these mRNAs are translatable and encode functional transcriptional regulators of stress-responsive genes
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	 ABA 	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	 ABA 	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.	 OsFKBP20-1b facilitates the splicing of mRNAs with retained introns after ABA treatment; some of these mRNAs are translatable and encode functional transcriptional regulators of stress-responsive genes
OsFKBP20-1b	Os01g0844300	LOC_Os01g62610	 ABA 	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.	 In addition, interacting proteins, OsSR34 and OsSR45, regulate the splicing of the same retained introns as OsFKBP20-1b after ABA treatment
OsFKI	Os01g0894300	LOC_Os01g66940	grain	Isolation and characterization of two fructokinase cDNA clones from rice	The mRNA corresponding to OsFKII accumulated at high levels in developing rice grains, whereas there were only low levels of OsFKI transcripts in immature seeds
OsFKI	Os01g0894300	LOC_Os01g66940	seed	Isolation and characterization of two fructokinase cDNA clones from rice	The mRNA corresponding to OsFKII accumulated at high levels in developing rice grains, whereas there were only low levels of OsFKI transcripts in immature seeds
OsFKII	Os08g0113100	LOC_Os08g02120	seed	Isolation and characterization of two fructokinase cDNA clones from rice	The mRNA corresponding to OsFKII accumulated at high levels in developing rice grains, whereas there were only low levels of OsFKI transcripts in immature seeds
OsFKII	Os08g0113100	LOC_Os08g02120	grain	Isolation and characterization of two fructokinase cDNA clones from rice	The mRNA corresponding to OsFKII accumulated at high levels in developing rice grains, whereas there were only low levels of OsFKI transcripts in immature seeds
OsFl3	Os01g0517800	LOC_Os01g33350	grain	The PGS1 basic helix-loop-helix protein regulates Fl3 to impact seed growth and grain yield in cereals.	 In rice, the OsFl3 CRISPR/Cas9 knockout lines showed reduced average thousand-grain weight, grain width, and grain length in rice
OsFl3	Os01g0517800	LOC_Os01g33350	grain length	The PGS1 basic helix-loop-helix protein regulates Fl3 to impact seed growth and grain yield in cereals.	 In rice, the OsFl3 CRISPR/Cas9 knockout lines showed reduced average thousand-grain weight, grain width, and grain length in rice
OsFl3	Os01g0517800	LOC_Os01g33350	grain weight	The PGS1 basic helix-loop-helix protein regulates Fl3 to impact seed growth and grain yield in cereals.	 In rice, the OsFl3 CRISPR/Cas9 knockout lines showed reduced average thousand-grain weight, grain width, and grain length in rice
OsFl3	Os01g0517800	LOC_Os01g33350	grain width	The PGS1 basic helix-loop-helix protein regulates Fl3 to impact seed growth and grain yield in cereals.	 In rice, the OsFl3 CRISPR/Cas9 knockout lines showed reduced average thousand-grain weight, grain width, and grain length in rice
OsFLA2	Os02g0142875	None	leaf	An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.).	An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.).
OsFLA2	Os02g0142875	None	leaf angle	An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.).	An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.).
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	map-based cloning	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	 Map-based cloning revealed that HSA1 encodes a putative OsFLN2
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 The hsa1 mutant harbors a recessive mutation in a gene encoding fructokinase-like protein2 (FLN2); the mutation causes a premature stop codon and results in a severe albino phenotype, with defects in early chloroplast development
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 The color of hsa1 mutant plants gradually changed from albino to green at later stages of development at various temperatures and chloroplast biogenesis was strongly delayed at high temperature (32<U+202F>��C)
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 HSA1 localizes to the chloroplast and regulates chloroplast development
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 These results demonstrated that HSA1 plays important roles in chloroplast development at early stages, and functions in protecting chloroplasts under heat stress at later stages in rice
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	temperature	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 The color of hsa1 mutant plants gradually changed from albino to green at later stages of development at various temperatures and chloroplast biogenesis was strongly delayed at high temperature (32<U+202F>��C)
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	development	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 The hsa1 mutant harbors a recessive mutation in a gene encoding fructokinase-like protein2 (FLN2); the mutation causes a premature stop codon and results in a severe albino phenotype, with defects in early chloroplast development
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	development	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 The color of hsa1 mutant plants gradually changed from albino to green at later stages of development at various temperatures and chloroplast biogenesis was strongly delayed at high temperature (32<U+202F>��C)
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	development	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 HSA1 localizes to the chloroplast and regulates chloroplast development
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	development	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 These results demonstrated that HSA1 plays important roles in chloroplast development at early stages, and functions in protecting chloroplasts under heat stress at later stages in rice
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	stress	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 These results demonstrated that HSA1 plays important roles in chloroplast development at early stages, and functions in protecting chloroplasts under heat stress at later stages in rice
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast development	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 The hsa1 mutant harbors a recessive mutation in a gene encoding fructokinase-like protein2 (FLN2); the mutation causes a premature stop codon and results in a severe albino phenotype, with defects in early chloroplast development
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast development	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 HSA1 localizes to the chloroplast and regulates chloroplast development
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast development	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	 These results demonstrated that HSA1 plays important roles in chloroplast development at early stages, and functions in protecting chloroplasts under heat stress at later stages in rice
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	leaf	A natural variation in the promoter of GRA117 affects carbon assimilation in rice.	 GRA117 encodes PfkB-type fructokinase-like 2, which is subcellularly localized in chloroplasts and is widely expressed in various rice tissues, particularly at high levels in leaf tissues
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast	A natural variation in the promoter of GRA117 affects carbon assimilation in rice.	 RNA-Seq analysis revealed that GRA117 plays a significant role in photosynthetic carbon fixation, carbon metabolism, and chloroplast ribosome-related pathways
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast	A natural variation in the promoter of GRA117 affects carbon assimilation in rice.	 Our study supports that GRA117 promotes the Calvin-Benson cycle by regulating chloroplast development, ultimately leading to enhanced carbon assimilation in rice
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	development	A natural variation in the promoter of GRA117 affects carbon assimilation in rice.	GRA117 is crucial in the process of carbon assimilation in rice as it regulates the development of chloroplasts, which in turn facilitates the Calvin-Benson cycle
OsFLN2|HSA1|GRA117	Os03g0602600	LOC_Os03g40550	chloroplast development	A natural variation in the promoter of GRA117 affects carbon assimilation in rice.	 Our study supports that GRA117 promotes the Calvin-Benson cycle by regulating chloroplast development, ultimately leading to enhanced carbon assimilation in rice
OsFlot	Os10g0481500	LOC_Os10g34040	cell death	Overexpression of BAX INHIBITOR-1 Links Plasma Membrane Microdomain Proteins to Stress.	Loss-of-function analysis demonstrated that FLOT and HIR3 are required for cell death by oxidative stress and salicylic acid, suggesting that the decreased levels of these proteins directly contribute to the stress-tolerant phenotypes in BI-1-overexpressing rice cells.
OsFlot	Os10g0481500	LOC_Os10g34040	oxidative stress	Overexpression of BAX INHIBITOR-1 Links Plasma Membrane Microdomain Proteins to Stress.	Loss-of-function analysis demonstrated that FLOT and HIR3 are required for cell death by oxidative stress and salicylic acid, suggesting that the decreased levels of these proteins directly contribute to the stress-tolerant phenotypes in BI-1-overexpressing rice cells.
OsFlot	Os10g0481500	LOC_Os10g34040	salicylic acid	Overexpression of BAX INHIBITOR-1 Links Plasma Membrane Microdomain Proteins to Stress.	Loss-of-function analysis demonstrated that FLOT and HIR3 are required for cell death by oxidative stress and salicylic acid, suggesting that the decreased levels of these proteins directly contribute to the stress-tolerant phenotypes in BI-1-overexpressing rice cells.
OsFlot	Os10g0481500	LOC_Os10g34040	stress tolerance	Overexpression of BAX INHIBITOR-1 Links Plasma Membrane Microdomain Proteins to Stress.	Loss-of-function analysis demonstrated that FLOT and HIR3 are required for cell death by oxidative stress and salicylic acid, suggesting that the decreased levels of these proteins directly contribute to the stress-tolerant phenotypes in BI-1-overexpressing rice cells.
OsFLP	Os07g0627300	LOC_Os07g43420	growth	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Our results reveal that OsFLP is probably a multiple functional regulator involved in many biological processes in growth development and stress responses in rice
OsFLP	Os07g0627300	LOC_Os07g43420	development	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Our results reveal that OsFLP is probably a multiple functional regulator involved in many biological processes in growth development and stress responses in rice
OsFLP	Os07g0627300	LOC_Os07g43420	Kinase	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Additionally, Yeast one-hybrid assay and electrophoretic mobility shift assay (EMSA) showed that OsFLP directly bound to the promoter region of Oryza sativa B-type Cyclin-Dependent Kinase 1;1 (OsCDKB1;1), and the expression of OsCDKB1;1 was repressed in osflp
OsFLP	Os07g0627300	LOC_Os07g43420	kinase	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Additionally, Yeast one-hybrid assay and electrophoretic mobility shift assay (EMSA) showed that OsFLP directly bound to the promoter region of Oryza sativa B-type Cyclin-Dependent Kinase 1;1 (OsCDKB1;1), and the expression of OsCDKB1;1 was repressed in osflp
OsFLP	Os07g0627300	LOC_Os07g43420	salt	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 However, we mainly focus on the role of OsFLP in salt stress response
OsFLP	Os07g0627300	LOC_Os07g43420	salt	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Consistently, phenotypic analysis under salt stress conditions showed that osflp exhibited significant sensitivity to salt stress, while OsFLP over-expression lines displayed obvious salt tolerance
OsFLP	Os07g0627300	LOC_Os07g43420	salt	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Taken together, our findings reveal a crucial function of OsFLP regulating OsCDKB1;1 in salt tolerance and largely extend the knowledge about the role of OsFLP in rice
OsFLP	Os07g0627300	LOC_Os07g43420	tolerance	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Consistently, phenotypic analysis under salt stress conditions showed that osflp exhibited significant sensitivity to salt stress, while OsFLP over-expression lines displayed obvious salt tolerance
OsFLP	Os07g0627300	LOC_Os07g43420	tolerance	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Taken together, our findings reveal a crucial function of OsFLP regulating OsCDKB1;1 in salt tolerance and largely extend the knowledge about the role of OsFLP in rice
OsFLP	Os07g0627300	LOC_Os07g43420	salt tolerance	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Consistently, phenotypic analysis under salt stress conditions showed that osflp exhibited significant sensitivity to salt stress, while OsFLP over-expression lines displayed obvious salt tolerance
OsFLP	Os07g0627300	LOC_Os07g43420	salt tolerance	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Taken together, our findings reveal a crucial function of OsFLP regulating OsCDKB1;1 in salt tolerance and largely extend the knowledge about the role of OsFLP in rice
OsFLP	Os07g0627300	LOC_Os07g43420	salt stress	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 However, we mainly focus on the role of OsFLP in salt stress response
OsFLP	Os07g0627300	LOC_Os07g43420	salt stress	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Consistently, phenotypic analysis under salt stress conditions showed that osflp exhibited significant sensitivity to salt stress, while OsFLP over-expression lines displayed obvious salt tolerance
OsFLP	Os07g0627300	LOC_Os07g43420	stress	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Our results reveal that OsFLP is probably a multiple functional regulator involved in many biological processes in growth development and stress responses in rice
OsFLP	Os07g0627300	LOC_Os07g43420	stress	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 However, we mainly focus on the role of OsFLP in salt stress response
OsFLP	Os07g0627300	LOC_Os07g43420	stress	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Consistently, phenotypic analysis under salt stress conditions showed that osflp exhibited significant sensitivity to salt stress, while OsFLP over-expression lines displayed obvious salt tolerance
OsFLP	Os07g0627300	LOC_Os07g43420	stress response	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 Our results reveal that OsFLP is probably a multiple functional regulator involved in many biological processes in growth development and stress responses in rice
OsFLP	Os07g0627300	LOC_Os07g43420	stress response	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	 However, we mainly focus on the role of OsFLP in salt stress response
OsFLP	Os07g0627300	LOC_Os07g43420	transcription factor	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.
OsFLP	Os07g0627300	LOC_Os07g43420	drought	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.
OsFLP	Os07g0627300	LOC_Os07g43420	drought	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 Overexpression of OsFLP showed enhanced tolerance to drought and salt stresses
OsFLP	Os07g0627300	LOC_Os07g43420	drought	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 These findings suggested that OsFLP positively participates in drought stress, mainly through regulating regulators&#x27; transcripts of OsNAC1 and OsNAC6
OsFLP	Os07g0627300	LOC_Os07g43420	salt	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 OsFLP was transiently induced by drought, salt stress and abscisic acid (ABA)
OsFLP	Os07g0627300	LOC_Os07g43420	salt	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 Overexpression of OsFLP showed enhanced tolerance to drought and salt stresses
OsFLP	Os07g0627300	LOC_Os07g43420	tolerance	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 Overexpression of OsFLP showed enhanced tolerance to drought and salt stresses
OsFLP	Os07g0627300	LOC_Os07g43420	nucleus	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 Here, OsFLP was identified as an R2R3-MYB transcriptional activator and localized in the nucleus
OsFLP	Os07g0627300	LOC_Os07g43420	salt stress	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 OsFLP was transiently induced by drought, salt stress and abscisic acid (ABA)
OsFLP	Os07g0627300	LOC_Os07g43420	salt stress	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 Overexpression of OsFLP showed enhanced tolerance to drought and salt stresses
OsFLP	Os07g0627300	LOC_Os07g43420	stress	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.
OsFLP	Os07g0627300	LOC_Os07g43420	stress	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 OsFLP was transiently induced by drought, salt stress and abscisic acid (ABA)
OsFLP	Os07g0627300	LOC_Os07g43420	abscisic acid	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 OsFLP was transiently induced by drought, salt stress and abscisic acid (ABA)
OsFLP	Os07g0627300	LOC_Os07g43420	drought stress	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.
OsFLP	Os07g0627300	LOC_Os07g43420	drought stress	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 These findings suggested that OsFLP positively participates in drought stress, mainly through regulating regulators&#x27; transcripts of OsNAC1 and OsNAC6
OsFLP	Os07g0627300	LOC_Os07g43420	drought stress 	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.
OsFLP	Os07g0627300	LOC_Os07g43420	transcriptional activator	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 Here, OsFLP was identified as an R2R3-MYB transcriptional activator and localized in the nucleus
OsFLP	Os07g0627300	LOC_Os07g43420	stress response	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.
OsFLP	Os07g0627300	LOC_Os07g43420	drought stress response	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.
OsFLP	Os07g0627300	LOC_Os07g43420	MYB transcriptional activator	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	 Here, OsFLP was identified as an R2R3-MYB transcriptional activator and localized in the nucleus
OsFLS2	Os04g0618700	LOC_Os04g52780	growth	Analysis of flagellin perception mediated by flg22 receptor OsFLS2 in rice	However, examination of the growth rate of the compatible strain in inoculated OsFLS2-overexpressing rice could not confirm bacterial growth suppression compared with wild-type rice
OsFLS2	Os04g0618700	LOC_Os04g52780	cell death	Analysis of flagellin perception mediated by flg22 receptor OsFLS2 in rice	OsFLS2-overexpressing rice cultured cells generated stronger immune responses with the induction of cell death following stimulation with flg22 and flagellin
OsFLU1|OXP	Os01g0510600	LOC_Os01g32730	transcription factor	Rice FLUORESCENT1 Is Involved in the Regulation of Chlorophyll.	Rice PHYTOCHROME-INTERACTING FACTOR-LIKE14 (OsPIL14) transcription factor directly bound to the OsFLU1 promoter and activated its expression
OsFLZ18	Os06g0125200	LOC_Os06g03520	tolerance	Genome-Wide Identification, Expression and Functional Analysis Reveal the Involvement of FCS-Like Zinc Finger Gene Family in Submergence Response in Rice	As a case study, we demonstrated that OsFLZ18 interacted with SnRK1A and inhibited the transcriptional activation activity of SnRK1A in modulating the expression of its target gene Amy3, a positive regulator in rice flooding tolerance
OsFLZ2	Os01g0593200	LOC_Os01g41010	nucleus	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 Both OsFLZ2 and OsMADS51 are highly expressed in rice leaves before floral transition under natural SD conditions, and their proteins are colocalized in the nucleus
OsFLZ2	Os01g0593200	LOC_Os01g41010	R protein	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 Both OsFLZ2 and OsMADS51 are highly expressed in rice leaves before floral transition under natural SD conditions, and their proteins are colocalized in the nucleus
OsFLZ2	Os01g0593200	LOC_Os01g41010	floral	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 OsFLZ2 delays flowering by repressing the expression of key floral integrator genes
OsFLZ2	Os01g0593200	LOC_Os01g41010	floral	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 Both OsFLZ2 and OsMADS51 are highly expressed in rice leaves before floral transition under natural SD conditions, and their proteins are colocalized in the nucleus
OsFLZ2	Os01g0593200	LOC_Os01g41010	heading date	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 Co-expression of OsFLZ2 can destabilize OsMADS51 and weaken its transcriptional activation of the downstream target gene Early heading date 1 (Ehd1)
OsFLZ2	Os01g0593200	LOC_Os01g41010	flowering time	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.
OsFLZ2	Os01g0593200	LOC_Os01g41010	flowering time	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 Here, we report that OsFLZ2 is a negative regulator of rice flowering time
OsFLZ2	Os01g0593200	LOC_Os01g41010	flowering time	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 Taken together, these results indicate that OsFLZ2 can interfere with the function of OsMADS51 to fine-tune rice flowering time
OsFLZ2	Os01g0593200	LOC_Os01g41010	flowering	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.
OsFLZ2	Os01g0593200	LOC_Os01g41010	flowering	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 Here, we report that OsFLZ2 is a negative regulator of rice flowering time
OsFLZ2	Os01g0593200	LOC_Os01g41010	flowering	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 OsFLZ2 delays flowering by repressing the expression of key floral integrator genes
OsFLZ2	Os01g0593200	LOC_Os01g41010	flowering	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 Biochemical assays showed OsFLZ2 physically interacts with OsMADS51, a flowering activator under short-day (SD) conditions
OsFLZ2	Os01g0593200	LOC_Os01g41010	flowering	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	 Taken together, these results indicate that OsFLZ2 can interfere with the function of OsMADS51 to fine-tune rice flowering time
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	stem	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Furthermore, a lower turgor potential and transpiration rate in their mature leaves indicates that oscow1 plants are water-deficient, due to insufficient water uptake that possibly stems from that diminished root to shoot ratio
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	growth	Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase	Our results demonstrated that IAA biosynthesis regulated by OsFMO(t) is likely localized and might play an essential role in shaping local IAA concentrations which, in turn, is critical for regulating normal growth and development in rice
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	leaf	Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase	In this study, the full-length genomic DNA and cDNA of OsFMO(t), a FMO gene that was originally identified from a rolled-leaf mutant in rice, was isolated and cloned from wild type of the rolled-leaf mutant
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	leaf	Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase	Spatio-temporal expression analysis using RT-PCR and histochemical analysis for GUS activity revealed that expression of OsFMO(t) was totally absent in the rolled-leaf mutant
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	leaf	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Homozygous plants with either a Tos17 or T-DNA-inserted allele of OsCOW1 exhibit phenotypes of rolled leaves, reduced leaf widths, and lower root to shoot ratios
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	leaf	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	When oscow1 seedlings are grown under low-intensity light and high relative humidity, the rolled-leaf phenotype is greatly alleviated
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	iaa	Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase	Overexpression of OsFMO(t) in transformed rice calli produced IAA-excessive phenotypes that showed browning and lethal effects when exogenous auxins such as naphthylacetic acid (NAA) were added to the medium
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	iaa	Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase	These results suggested that the OsFMO(t) protein is involved in IAA biosynthesis in rice and its overexpression could lead to the malformation of calli
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	iaa	Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase	Our results demonstrated that IAA biosynthesis regulated by OsFMO(t) is likely localized and might play an essential role in shaping local IAA concentrations which, in turn, is critical for regulating normal growth and development in rice
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	root	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Homozygous plants with either a Tos17 or T-DNA-inserted allele of OsCOW1 exhibit phenotypes of rolled leaves, reduced leaf widths, and lower root to shoot ratios
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	root	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Furthermore, a lower turgor potential and transpiration rate in their mature leaves indicates that oscow1 plants are water-deficient, due to insufficient water uptake that possibly stems from that diminished root to shoot ratio
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	root	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Thus, our observations suggest that OsCOW1-mediated IAA biosynthesis plays an important role in maintaining root to shoot ratios and, in turn, affects water homeostasis in rice
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	shoot	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Homozygous plants with either a Tos17 or T-DNA-inserted allele of OsCOW1 exhibit phenotypes of rolled leaves, reduced leaf widths, and lower root to shoot ratios
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	shoot	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Furthermore, a lower turgor potential and transpiration rate in their mature leaves indicates that oscow1 plants are water-deficient, due to insufficient water uptake that possibly stems from that diminished root to shoot ratio
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	shoot	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Thus, our observations suggest that OsCOW1-mediated IAA biosynthesis plays an important role in maintaining root to shoot ratios and, in turn, affects water homeostasis in rice
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	seedling	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	When oscow1 seedlings are grown under low-intensity light and high relative humidity, the rolled-leaf phenotype is greatly alleviated
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	auxin	Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase	Overexpression of OsFMO(t) in transformed rice calli produced IAA-excessive phenotypes that showed browning and lethal effects when exogenous auxins such as naphthylacetic acid (NAA) were added to the medium
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	homeostasis	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Thus, our observations suggest that OsCOW1-mediated IAA biosynthesis plays an important role in maintaining root to shoot ratios and, in turn, affects water homeostasis in rice
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	iaa	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio	Thus, our observations suggest that OsCOW1-mediated IAA biosynthesis plays an important role in maintaining root to shoot ratios and, in turn, affects water homeostasis in rice
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	leaf	Genetic analysis of rice mutants responsible for narrow leaf phenotype and reduced vein number.	In this paper, we examined the function of four genes that regulate the width of the leaf blade and the vein number: NARROW LEAF1 (NAL1), NAL2, NAL3 and NAL7
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	leaf	Genetic analysis of rice mutants responsible for narrow leaf phenotype and reduced vein number.	In contrast, the nal7 mutation showed a milder effect on leaf width and vein number, and both the large and small veins were similarly affected
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	leaf	Genetic analysis of rice mutants responsible for narrow leaf phenotype and reduced vein number.	The nal7 mutation showed additive effects on both leaf width and vein number, when combined with the nal1 single or the nal2 nal3 double mutation
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	leaf	Genetic analysis of rice mutants responsible for narrow leaf phenotype and reduced vein number.	In addition, observations of inner tissues revealed that cell differentiation was partially compromised in the nal2 nal3 nal7 mutant, consistent with the severe reduction in leaf width in this triple mutant
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	leaf	Characterization of dwarf and narrow leaf ( dnl-4) mutant in rice	 The observation that DNL-4 expression corresponded with that of NAL1 and NAL7 is consistent with the narrow leaf phenotype of the dnl-4 mutant
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	auxin	and auxin-mediated mechanisms.	 Soil compaction-induced ethylene also up-regulates the auxin biosynthesis gene OsYUC8
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	ethylene	and auxin-mediated mechanisms.	 Soil compaction-induced ethylene also up-regulates the auxin biosynthesis gene OsYUC8
OsFMO|OsCOW1|NAL7|OsYUC8	Os03g0162000	LOC_Os03g06654	auxin biosynthesis	and auxin-mediated mechanisms.	 Soil compaction-induced ethylene also up-regulates the auxin biosynthesis gene OsYUC8
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	spikelet	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	In situ hybridization experiments showed the transcripts of OsFOR1 are present in young spikelet primordia and in almost all of the young floral organs
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	spikelet	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	OsFOR1 transcript was not detected in the frizzy panicle mutant, which is defective in its spikelet formation but normal in inflorescence-meristem initiation and maintenance
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	lemma	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	Antisense expression of OsFOR1 resulted in an increase in the numbers of floral organs, including the stamen, carpel, palea/lemma, stigma, and lodicule
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	meristem	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	OsFOR1 transcript was not detected in the frizzy panicle mutant, which is defective in its spikelet formation but normal in inflorescence-meristem initiation and maintenance
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	panicle	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	We have isolated a cDNA clone, OsFOR1, from the immature panicles of rice
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	panicle	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	OsFOR1 is highly expressed in the calli and immature and mature panicles, while detectable at only low levels in seedling roots and mature stems
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	panicle	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	OsFOR1 transcript was not detected in the frizzy panicle mutant, which is defective in its spikelet formation but normal in inflorescence-meristem initiation and maintenance
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	palea	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	Antisense expression of OsFOR1 resulted in an increase in the numbers of floral organs, including the stamen, carpel, palea/lemma, stigma, and lodicule
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	stem	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	OsFOR1 is highly expressed in the calli and immature and mature panicles, while detectable at only low levels in seedling roots and mature stems
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	stem	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	OsFOR1 transcript was not detected in the frizzy panicle mutant, which is defective in its spikelet formation but normal in inflorescence-meristem initiation and maintenance
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	stamen	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	Antisense expression of OsFOR1 resulted in an increase in the numbers of floral organs, including the stamen, carpel, palea/lemma, stigma, and lodicule
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	inflorescence	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	OsFOR1 transcript was not detected in the frizzy panicle mutant, which is defective in its spikelet formation but normal in inflorescence-meristem initiation and maintenance
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	floral	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	floral organ number	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	floral	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	The OsFOR1 (Oryza sativa floral organ regulator 1) gene encodes a protein that contains a leucine-rich repeat (LRR) domain
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	floral	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	In situ hybridization experiments showed the transcripts of OsFOR1 are present in young spikelet primordia and in almost all of the young floral organs
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	floral	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	Antisense expression of OsFOR1 resulted in an increase in the numbers of floral organs, including the stamen, carpel, palea/lemma, stigma, and lodicule
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	floral	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	Therefore, we suggest that OsFOR1 plays a role in the formation and/or maintenance of floral organ primordia
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	floral	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	seedling	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	OsFOR1 is highly expressed in the calli and immature and mature panicles, while detectable at only low levels in seedling roots and mature stems
OsFOR1|PGIP	Os07g0568700	LOC_Os07g38130	root	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice	OsFOR1 is highly expressed in the calli and immature and mature panicles, while detectable at only low levels in seedling roots and mature stems
OsFPFL4	Os04g0282400	LOC_Os04g21350	root	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).
OsFPFL4	Os04g0282400	LOC_Os04g21350	root	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Plants overexpressing OsFPFL4 have shorter primary root, more lateral roots and adventitious roots than wild type; however, RNA interference (RNAi) of OsFPFL4 significantly inhibits the growth of root system, and also delays the flowering time in rice
OsFPFL4	Os04g0282400	LOC_Os04g21350	root	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Our results reveal that OsFPFL4 is involved in modulating the root and flower development by affecting auxin and ROS homeostasis in rice plants
OsFPFL4	Os04g0282400	LOC_Os04g21350	growth	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Plants overexpressing OsFPFL4 have shorter primary root, more lateral roots and adventitious roots than wild type; however, RNA interference (RNAi) of OsFPFL4 significantly inhibits the growth of root system, and also delays the flowering time in rice
OsFPFL4	Os04g0282400	LOC_Os04g21350	shoot	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Here, our results show that rice plants overexpressing OsFPFL4 accumulate more auxin in the shoot and root, whereas RNAi lines have less auxin than wild type
OsFPFL4	Os04g0282400	LOC_Os04g21350	auxin	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).
OsFPFL4	Os04g0282400	LOC_Os04g21350	auxin	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Here, our results show that rice plants overexpressing OsFPFL4 accumulate more auxin in the shoot and root, whereas RNAi lines have less auxin than wild type
OsFPFL4	Os04g0282400	LOC_Os04g21350	auxin	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	As expected, the transcript levels of genes responsible for auxin biosynthesis and polar transport are altered in these OsFPFL4 transgenic plants
OsFPFL4	Os04g0282400	LOC_Os04g21350	auxin	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Our results reveal that OsFPFL4 is involved in modulating the root and flower development by affecting auxin and ROS homeostasis in rice plants
OsFPFL4	Os04g0282400	LOC_Os04g21350	auxin	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	OsFPFL4 controls auxin accumulation via affecting auxin biosynthesis and transport, and also modulates ROS homeostasis by balancing ROS producing and scavenging
OsFPFL4	Os04g0282400	LOC_Os04g21350	flower	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).
OsFPFL4	Os04g0282400	LOC_Os04g21350	flower	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Our results reveal that OsFPFL4 is involved in modulating the root and flower development by affecting auxin and ROS homeostasis in rice plants
OsFPFL4	Os04g0282400	LOC_Os04g21350	pollen	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Interestingly, increased or repressed expression of OsFPFL4 leads to shrunken anthers and abnormal pollen grains
OsFPFL4	Os04g0282400	LOC_Os04g21350	development	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).
OsFPFL4	Os04g0282400	LOC_Os04g21350	development	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Our results reveal that OsFPFL4 is involved in modulating the root and flower development by affecting auxin and ROS homeostasis in rice plants
OsFPFL4	Os04g0282400	LOC_Os04g21350	homeostasis	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Our results reveal that OsFPFL4 is involved in modulating the root and flower development by affecting auxin and ROS homeostasis in rice plants
OsFPFL4	Os04g0282400	LOC_Os04g21350	homeostasis	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	OsFPFL4 controls auxin accumulation via affecting auxin biosynthesis and transport, and also modulates ROS homeostasis by balancing ROS producing and scavenging
OsFPFL4	Os04g0282400	LOC_Os04g21350	flower development	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).
OsFPFL4	Os04g0282400	LOC_Os04g21350	flower development	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Our results reveal that OsFPFL4 is involved in modulating the root and flower development by affecting auxin and ROS homeostasis in rice plants
OsFPFL4	Os04g0282400	LOC_Os04g21350	flowering time	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Plants overexpressing OsFPFL4 have shorter primary root, more lateral roots and adventitious roots than wild type; however, RNA interference (RNAi) of OsFPFL4 significantly inhibits the growth of root system, and also delays the flowering time in rice
OsFPFL4	Os04g0282400	LOC_Os04g21350	lateral root	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Plants overexpressing OsFPFL4 have shorter primary root, more lateral roots and adventitious roots than wild type; however, RNA interference (RNAi) of OsFPFL4 significantly inhibits the growth of root system, and also delays the flowering time in rice
OsFPFL4	Os04g0282400	LOC_Os04g21350	adventitious root	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Plants overexpressing OsFPFL4 have shorter primary root, more lateral roots and adventitious roots than wild type; however, RNA interference (RNAi) of OsFPFL4 significantly inhibits the growth of root system, and also delays the flowering time in rice
OsFPFL4	Os04g0282400	LOC_Os04g21350	primary root	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Plants overexpressing OsFPFL4 have shorter primary root, more lateral roots and adventitious roots than wild type; however, RNA interference (RNAi) of OsFPFL4 significantly inhibits the growth of root system, and also delays the flowering time in rice
OsFPFL4	Os04g0282400	LOC_Os04g21350	auxin biosynthesis	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	As expected, the transcript levels of genes responsible for auxin biosynthesis and polar transport are altered in these OsFPFL4 transgenic plants
OsFPFL4	Os04g0282400	LOC_Os04g21350	auxin biosynthesis	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	OsFPFL4 controls auxin accumulation via affecting auxin biosynthesis and transport, and also modulates ROS homeostasis by balancing ROS producing and scavenging
OsFPFL4	Os04g0282400	LOC_Os04g21350	flowering	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Plants overexpressing OsFPFL4 have shorter primary root, more lateral roots and adventitious roots than wild type; however, RNA interference (RNAi) of OsFPFL4 significantly inhibits the growth of root system, and also delays the flowering time in rice
OsFPN1	Os06g0560000	LOC_Os06g36450	xylem	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice.	 In addition to the high Co and Ni in brown rice and shoots, the mutant also exhibited high Co and Ni concentrations in the xylem sap, but low concentrations in the roots, suggesting that OsFPN1 is involved in the root-to-shoot translocation of Co and Ni
OsFPN1	Os06g0560000	LOC_Os06g36450	growth	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice.	 The growth of 1187_n and CRISPR/Cas9 lines were suppressed under high Co and Ni condition, indicating OsFPN1 is required for the normal growth under high Co and Ni
OsFPN1	Os06g0560000	LOC_Os06g36450	detoxification	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice.	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice.
OsFPN1	Os06g0560000	LOC_Os06g36450	detoxification	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice.	 These results suggest that OsFPN1 can transport Co and Ni and is vital detoxification in rice
OsFPN1	Os06g0560000	LOC_Os06g36450	Ni transport	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice
OsFPN1	Os06g0560000	LOC_Os06g36450	Co transport	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice
OsFPPS1|FPPS1|FPPS	Os01g0703400	LOC_Os01g50760	chloroplast	Localization of farnesyl diphosphate synthase in chloroplasts	Immunocytochemical staining using anti-FPPS1 antibody followed by electron microscopy showed that FPPS1 was localized to chloroplasts of rice mesophyll cells
OsFPPS1|FPPS1|FPPS	Os01g0703400	LOC_Os01g50760	chloroplast	Localization of farnesyl diphosphate synthase in chloroplasts	FPPS was detected in the chloroplast fraction in wheat, and was protected from proteolysis following trypsin treatment of chloroplasts
OsFPPS1|FPPS1|FPPS	Os01g0703400	LOC_Os01g50760	chloroplast	Localization of farnesyl diphosphate synthase in chloroplasts	FPPS was also detected in the chloroplast fraction of a dicot plant, tobacco
OsFPPS1|FPPS1|FPPS	Os01g0703400	LOC_Os01g50760	chloroplast	Localization of farnesyl diphosphate synthase in chloroplasts	Immunocytochemical staining using anti-FPPS1 antibody followed by electron microscopy showed that FPPS1 was localized to chloroplasts of rice mesophyll cells
OsFRDL1	Os03g0216700	LOC_Os03g11734	transporter	A rice FRD3-like (OsFRDL1) gene is expressed in the cells involved in long-distance transport	These results suggest that OsFRDL1 is a transporter that resides in the plasma membrane of cells involved in long-distant transport
OsFRDL1	Os03g0216700	LOC_Os03g11734	aluminum	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice	Here, we report the function of a rice (Oryza sativa) MATE gene (Os03g0216700, OsFRDL1), the closest homolog of barley (Hordeum vulgare) HvAACT1 (aluminum [Al]-activated citrate transporter 1), in terms of metal stress (iron [Fe] deficiency and Al toxicity)
OsFRDL1	Os03g0216700	LOC_Os03g11734	reproductive	A rice FRD3-like (OsFRDL1) gene is expressed in the cells involved in long-distance transport	Furthermore, OsFRDL1 expression was observed during the reproductive stage
OsFRDL1	Os03g0216700	LOC_Os03g11734	iron	A rice FRD3-like (OsFRDL1) gene is expressed in the cells involved in long-distance transport	Of these, we cloned three OsFRDL genes from a cDNA library prepared from iron-deficient rice roots: OsFRDL1, OsFRDL2, and OsFRDL3
OsFRDL1	Os03g0216700	LOC_Os03g11734	transporter	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice	Here, we report the function of a rice (Oryza sativa) MATE gene (Os03g0216700, OsFRDL1), the closest homolog of barley (Hordeum vulgare) HvAACT1 (aluminum [Al]-activated citrate transporter 1), in terms of metal stress (iron [Fe] deficiency and Al toxicity)
OsFRDL1	Os03g0216700	LOC_Os03g11734	transporter	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice	Taken together, our results indicate that OsFRDL1 is a citrate transporter localized at the pericycle cells, which is necessary for efficient translocation of Fe to the shoot as a Fe-citrate complex
OsFRDL1	Os03g0216700	LOC_Os03g11734	transporter	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice
OsFRDL1	Os03g0216700	LOC_Os03g11734	root	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice	Immunostaining showed that OsFRDL1 was localized at the pericycle cells of the roots
OsFRDL1	Os03g0216700	LOC_Os03g11734	iron	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice	Here, we report the function of a rice (Oryza sativa) MATE gene (Os03g0216700, OsFRDL1), the closest homolog of barley (Hordeum vulgare) HvAACT1 (aluminum [Al]-activated citrate transporter 1), in terms of metal stress (iron [Fe] deficiency and Al toxicity)
OsFRDL1	Os03g0216700	LOC_Os03g11734	iron	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice
OsFRDL1	Os03g0216700	LOC_Os03g11734	root	A rice FRD3-like (OsFRDL1) gene is expressed in the cells involved in long-distance transport	Of these, we cloned three OsFRDL genes from a cDNA library prepared from iron-deficient rice roots: OsFRDL1, OsFRDL2, and OsFRDL3
OsFRDL1	Os03g0216700	LOC_Os03g11734	root	A rice FRD3-like (OsFRDL1) gene is expressed in the cells involved in long-distance transport	OsFRDL1 was expressed weakly in Fe-sufficient roots, and slight expression was induced in the roots of Fe-deficient plants
OsFRDL1	Os03g0216700	LOC_Os03g11734	shoot	OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice	Taken together, our results indicate that OsFRDL1 is a citrate transporter localized at the pericycle cells, which is necessary for efficient translocation of Fe to the shoot as a Fe-citrate complex
OsFRDL1	Os03g0216700	LOC_Os03g11734	leaf	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	OsFRDL1 was expressed in most cells of enlarged vascular bundles, diffuse vascular bundles, and the interjacent parenchyma cell bridges of uppermost node I, as well as vascular tissues of the leaf blade, leaf sheath, peduncle, rachis, husk, and stamen
OsFRDL1	Os03g0216700	LOC_Os03g11734	vascular bundle	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	OsFRDL1 was expressed in most cells of enlarged vascular bundles, diffuse vascular bundles, and the interjacent parenchyma cell bridges of uppermost node I, as well as vascular tissues of the leaf blade, leaf sheath, peduncle, rachis, husk, and stamen
OsFRDL1	Os03g0216700	LOC_Os03g11734	vascular bundle	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	Iron was deposited in the parenchyma cell bridges, a few of the cell layers of the parenchyma tissues outside of the bundle sheath of enlarged vascular bundles in node I in both the wild-type rice and osfrdl1 mutant, but the mutant accumulated more Fe than the wild-type rice in this area
OsFRDL1	Os03g0216700	LOC_Os03g11734	growth	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	We found that OsFRDL1 (FERRIC REDUCTASE DEFECTIVE LIKE 1), a plasma membrane-localized transporter for citrate, was highly expressed in the upper nodes of rice at the reproductive growth stage
OsFRDL1	Os03g0216700	LOC_Os03g11734	pollen	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	Knockout of OsFRDL1 decreased pollen viability and grain fertility when grown in a paddy field
OsFRDL1	Os03g0216700	LOC_Os03g11734	grain	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	Knockout of OsFRDL1 decreased pollen viability and grain fertility when grown in a paddy field
OsFRDL1	Os03g0216700	LOC_Os03g11734	sheath	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	Iron was deposited in the parenchyma cell bridges, a few of the cell layers of the parenchyma tissues outside of the bundle sheath of enlarged vascular bundles in node I in both the wild-type rice and osfrdl1 mutant, but the mutant accumulated more Fe than the wild-type rice in this area
OsFRDL1	Os03g0216700	LOC_Os03g11734	reproductive	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	We found that OsFRDL1 (FERRIC REDUCTASE DEFECTIVE LIKE 1), a plasma membrane-localized transporter for citrate, was highly expressed in the upper nodes of rice at the reproductive growth stage
OsFRDL1	Os03g0216700	LOC_Os03g11734	stamen	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	OsFRDL1 was expressed in most cells of enlarged vascular bundles, diffuse vascular bundles, and the interjacent parenchyma cell bridges of uppermost node I, as well as vascular tissues of the leaf blade, leaf sheath, peduncle, rachis, husk, and stamen
OsFRDL1	Os03g0216700	LOC_Os03g11734	transporter	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	We found that OsFRDL1 (FERRIC REDUCTASE DEFECTIVE LIKE 1), a plasma membrane-localized transporter for citrate, was highly expressed in the upper nodes of rice at the reproductive growth stage
OsFRDL1	Os03g0216700	LOC_Os03g11734	fertility	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	Knockout of OsFRDL1 decreased pollen viability and grain fertility when grown in a paddy field
OsFRDL1	Os03g0216700	LOC_Os03g11734	plasma membrane	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	We found that OsFRDL1 (FERRIC REDUCTASE DEFECTIVE LIKE 1), a plasma membrane-localized transporter for citrate, was highly expressed in the upper nodes of rice at the reproductive growth stage
OsFRDL1	Os03g0216700	LOC_Os03g11734	iron	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.
OsFRDL1	Os03g0216700	LOC_Os03g11734	iron	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	Iron was deposited in the parenchyma cell bridges, a few of the cell layers of the parenchyma tissues outside of the bundle sheath of enlarged vascular bundles in node I in both the wild-type rice and osfrdl1 mutant, but the mutant accumulated more Fe than the wild-type rice in this area
OsFRDL1	Os03g0216700	LOC_Os03g11734	node	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	OsFRDL1 was expressed in most cells of enlarged vascular bundles, diffuse vascular bundles, and the interjacent parenchyma cell bridges of uppermost node I, as well as vascular tissues of the leaf blade, leaf sheath, peduncle, rachis, husk, and stamen
OsFRDL1	Os03g0216700	LOC_Os03g11734	node	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	Iron was deposited in the parenchyma cell bridges, a few of the cell layers of the parenchyma tissues outside of the bundle sheath of enlarged vascular bundles in node I in both the wild-type rice and osfrdl1 mutant, but the mutant accumulated more Fe than the wild-type rice in this area
OsFRDL1	Os03g0216700	LOC_Os03g11734	reproductive growth	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	We found that OsFRDL1 (FERRIC REDUCTASE DEFECTIVE LIKE 1), a plasma membrane-localized transporter for citrate, was highly expressed in the upper nodes of rice at the reproductive growth stage
OsFRDL2	Os10g0206800	LOC_Os10g13940	root	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.	The Al-induced inhibition of the root elongation was similar between the OsFRDL2 knockout line and its wild type rice
OsFRDL2	Os10g0206800	LOC_Os10g13940	tolerance	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.
OsFRDL2	Os10g0206800	LOC_Os10g13940	tolerance	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.	Furthermore, the expression of OsFRDL2 was regulated by ART1, a C2H2-type Zn-finger transcription factor for Al tolerance
OsFRDL2	Os10g0206800	LOC_Os10g13940	tolerance	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.	Collectively, our results indicate that although OsFRDL2 is involved in the Al-induced secretion of citrate, its contribution to high Al tolerance is relatively small in rice
OsFRDL2	Os10g0206800	LOC_Os10g13940	transcription factor	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.	Furthermore, the expression of OsFRDL2 was regulated by ART1, a C2H2-type Zn-finger transcription factor for Al tolerance
OsFRDL2	Os10g0206800	LOC_Os10g13940	root elongation	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.	The Al-induced inhibition of the root elongation was similar between the OsFRDL2 knockout line and its wild type rice
OsFRDL2	Os10g0206800	LOC_Os10g13940	Al tolerance	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.
OsFRDL2	Os10g0206800	LOC_Os10g13940	Al tolerance	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.	Furthermore, the expression of OsFRDL2 was regulated by ART1, a C2H2-type Zn-finger transcription factor for Al tolerance
OsFRDL2	Os10g0206800	LOC_Os10g13940	Al tolerance	Functional analysis of a MATE gene OsFRDL2 revealed its involvement in Al-induced secretion of citrate, but less contribution to Al tolerance in rice.	Collectively, our results indicate that although OsFRDL2 is involved in the Al-induced secretion of citrate, its contribution to high Al tolerance is relatively small in rice
OsFRDL4	Os01g0919100	LOC_Os01g69010	transporter	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Taken together, our results show that OsFRDL4 is an Al-induced citrate transporter localized at the plasma membrane of rice root cells and is one of the components of high Al tolerance in rice
OsFRDL4	Os01g0919100	LOC_Os01g69010	xylem	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Knockout of OsFRDL4 resulted in decreased Al tolerance and decreased citrate secretion compared with the wild-type rice, but did not affect citrate concentration in the xylem sap
OsFRDL4	Os01g0919100	LOC_Os01g69010	Al tolerance	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Furthermore, the OsFRDL4 expression was regulated by ART1, a C2H2-type zinc finger transcription factor for Al tolerance
OsFRDL4	Os01g0919100	LOC_Os01g69010	Al tolerance	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Knockout of OsFRDL4 resulted in decreased Al tolerance and decreased citrate secretion compared with the wild-type rice, but did not affect citrate concentration in the xylem sap
OsFRDL4	Os01g0919100	LOC_Os01g69010	Al tolerance	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Furthermore, there is a positive correlation between OsFRDL4 expression level and the amount of citrate secretion in rice cultivars that are differing in Al tolerance
OsFRDL4	Os01g0919100	LOC_Os01g69010	Al tolerance	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Taken together, our results show that OsFRDL4 is an Al-induced citrate transporter localized at the plasma membrane of rice root cells and is one of the components of high Al tolerance in rice
OsFRDL4	Os01g0919100	LOC_Os01g69010	root	An Al-inducible MATE gene is involved in external detoxification of Al in rice	The expression level of the OsFRDL4 gene in roots was very low in the absence of Al, but was greatly enhanced by Al after short exposure
OsFRDL4	Os01g0919100	LOC_Os01g69010	root	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Immunostaining showed that OsFRDL4 was localized in all cells in the root tip
OsFRDL4	Os01g0919100	LOC_Os01g69010	root	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Taken together, our results show that OsFRDL4 is an Al-induced citrate transporter localized at the plasma membrane of rice root cells and is one of the components of high Al tolerance in rice
OsFRDL4	Os01g0919100	LOC_Os01g69010	transcription factor	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Furthermore, the OsFRDL4 expression was regulated by ART1, a C2H2-type zinc finger transcription factor for Al tolerance
OsFRDL4	Os01g0919100	LOC_Os01g69010	tolerance	Retrotransposon-mediated aluminum tolerance through enhanced expression of the citrate transporter OsFRDL4.	Analysis with chromosome segment substitution lines (CSSL) derived from Nipponbare (high OsFRDL4 expression) and Kasalath (low OsFRDL4 expression) revealed that differential expression of OsFRDL4 is responsible for the QTL for Al tolerance detected previously on chromosome 1
OsFRDL4	Os01g0919100	LOC_Os01g69010	Al tolerance	Retrotransposon-mediated aluminum tolerance through enhanced expression of the citrate transporter OsFRDL4.	Analysis with chromosome segment substitution lines (CSSL) derived from Nipponbare (high OsFRDL4 expression) and Kasalath (low OsFRDL4 expression) revealed that differential expression of OsFRDL4 is responsible for the QTL for Al tolerance detected previously on chromosome 1
OsFRK3	Os06g0232200	LOC_Os06g12600	grain	New Fructokinase, OsFRK3, Regulates Starch Accumulation and Grain Filling in Rice.	 Evidently decreased grain width, grain thickness, and endosperm filling rate were detected in the osfrk3 mutants (osfrk3-1 and osfrk3-2) compared with those of the WT
OsFRK3	Os06g0232200	LOC_Os06g12600	starch	New Fructokinase, OsFRK3, Regulates Starch Accumulation and Grain Filling in Rice.	 These results suggest that OsFRK3 may positively regulate the accumulation of starch through influencing the sugar metabolism
OsFRK3	Os06g0232200	LOC_Os06g12600	endosperm	New Fructokinase, OsFRK3, Regulates Starch Accumulation and Grain Filling in Rice.	 Evidently decreased grain width, grain thickness, and endosperm filling rate were detected in the osfrk3 mutants (osfrk3-1 and osfrk3-2) compared with those of the WT
OsFRK3	Os06g0232200	LOC_Os06g12600	sugar	New Fructokinase, OsFRK3, Regulates Starch Accumulation and Grain Filling in Rice.	 These results suggest that OsFRK3 may positively regulate the accumulation of starch through influencing the sugar metabolism
OsFRK3	Os06g0232200	LOC_Os06g12600	grain width	New Fructokinase, OsFRK3, Regulates Starch Accumulation and Grain Filling in Rice.	 Evidently decreased grain width, grain thickness, and endosperm filling rate were detected in the osfrk3 mutants (osfrk3-1 and osfrk3-2) compared with those of the WT
OsFRO1	Os04g0578600	LOC_Os04g48930	tolerance	A Vacuolar Membrane Ferric-Chelate Reductase, OsFRO1, Alleviates Fe Toxicity in Rice (Oryza sativa L.).	Transgenic plants overexpressing OsFRO1 were more sensitive to Fe toxicity, in contrast RNA interference lines showed more tolerance to Fe excess stress
OsFRO1	Os04g0578600	LOC_Os04g48930	stress	A Vacuolar Membrane Ferric-Chelate Reductase, OsFRO1, Alleviates Fe Toxicity in Rice (Oryza sativa L.).	Transgenic plants overexpressing OsFRO1 were more sensitive to Fe toxicity, in contrast RNA interference lines showed more tolerance to Fe excess stress
OsFRO1	Os04g0578600	LOC_Os04g48930	cytoplasm	A Vacuolar Membrane Ferric-Chelate Reductase, OsFRO1, Alleviates Fe Toxicity in Rice (Oryza sativa L.).	Together these data show that OsFRO1 is involved in reducing ferric Fe into ferrous Fe in the vacuole, and makes the vacuolar stored Fe available to the cytoplasm through Fe (II) or chelated Fe (II) transporters
OsFRO1	Os04g0578600	LOC_Os04g48930	cytoplasm	A Vacuolar Membrane Ferric-Chelate Reductase, OsFRO1, Alleviates Fe Toxicity in Rice (Oryza sativa L.).	This indicates that OsFRO1 plays an important role to maintain Fe homeostasis between the cytoplasm and vacuole in rice
OsFRO1	Os04g0578600	LOC_Os04g48930	homeostasis	A Vacuolar Membrane Ferric-Chelate Reductase, OsFRO1, Alleviates Fe Toxicity in Rice (Oryza sativa L.).	This indicates that OsFRO1 plays an important role to maintain Fe homeostasis between the cytoplasm and vacuole in rice
OsFTIP1	Os06g0614000	LOC_Os06g41090	florigen transport	OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDK4.	Thus, dynamic modulation of OsFTIP1 abundance in leaves by a negative regulator OsUbDK4 is integral to the role of OsFTIP1 in mediating RFT1 transport in rice and provides key evidence for a conserved role of FTIP1-like MCTPs in mediating florigen transport in flowering plants.
OsFTIP1	Os06g0614000	LOC_Os06g41090	flowering	OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDK4.	Thus, dynamic modulation of OsFTIP1 abundance in leaves by a negative regulator OsUbDK4 is integral to the role of OsFTIP1 in mediating RFT1 transport in rice and provides key evidence for a conserved role of FTIP1-like MCTPs in mediating florigen transport in flowering plants.
OsFTIP1	Os06g0614000	LOC_Os06g41090	flower	OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDK4.	Thus, dynamic modulation of OsFTIP1 abundance in leaves by a negative regulator OsUbDK4 is integral to the role of OsFTIP1 in mediating RFT1 transport in rice and provides key evidence for a conserved role of FTIP1-like MCTPs in mediating florigen transport in flowering plants.
OsFTIP1	Os06g0614000	LOC_Os06g41090	drought	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice
OsFTIP1	Os06g0614000	LOC_Os06g41090	drought	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	Here, we report that OsFTIP1 negatively affects drought response
OsFTIP1	Os06g0614000	LOC_Os06g41090	drought	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	Further study reveals that OsFTIP1 interacts with a PEBP, rice MOTHER OF FT AND TFL1 (OsMFT1), which promotes rice tolerance to drought treatment
OsFTIP1	Os06g0614000	LOC_Os06g41090	drought	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	These results demonstrate that dynamic modulation of drought responsive genes by OsMFT1-OsMYB26 complex and OsMFT1-OsbZIP66 complex is integral to OsFTIP1 effect on impeding nuclear translocation of OsMFT1
OsFTIP1	Os06g0614000	LOC_Os06g41090	tolerance	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice
OsFTIP1	Os06g0614000	LOC_Os06g41090	tolerance	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	Further study reveals that OsFTIP1 interacts with a PEBP, rice MOTHER OF FT AND TFL1 (OsMFT1), which promotes rice tolerance to drought treatment
OsFTIP1	Os06g0614000	LOC_Os06g41090	drought tolerance	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice
OsFTIP6	Os04g0683800	LOC_Os04g58720	drought response	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice
OsFTIP7	Os05g0370600	LOC_Os05g30750	anther	OsFTIP7 determines auxin-mediated anther dehiscence in rice.	OsFTIP7 determines auxin-mediated anther dehiscence in rice.
OsFTIP7	Os05g0370600	LOC_Os05g30750	seedlings	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	Loss of function of OsFTIP7 reduced the toxicity of the NPs of CuO and ZnO to the seedlings by accumulating more biomass and chlorophyll contents
OsFTIP7	Os05g0370600	LOC_Os05g30750	seedlings	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	Furthermore, after high exposure to metallic oxide NPs, more indole-3-acetic acid (IAA) were determined in Osftip7 with higher expression of auxin biosynthetic genes than the control seedlings
OsFTIP7	Os05g0370600	LOC_Os05g30750	seedlings	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	What's more, IAA-treated seedlings displayed the similar phenotype as Osftip7 under high concentrations of NPs of CuO and ZnO
OsFTIP7	Os05g0370600	LOC_Os05g30750	auxin	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice
OsFTIP7	Os05g0370600	LOC_Os05g30750	auxin	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	Furthermore, after high exposure to metallic oxide NPs, more indole-3-acetic acid (IAA) were determined in Osftip7 with higher expression of auxin biosynthetic genes than the control seedlings
OsFTIP7	Os05g0370600	LOC_Os05g30750	auxin	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	Taken together, the results substantiate that OsFTIP7 is involved in metallic oxide nanoparticle-mediated physiological and biochemical changes by negatively regulating auxin biosynthesis in rice
OsFTIP7	Os05g0370600	LOC_Os05g30750	tolerance	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice
OsFTIP7	Os05g0370600	LOC_Os05g30750	biomass	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	Loss of function of OsFTIP7 reduced the toxicity of the NPs of CuO and ZnO to the seedlings by accumulating more biomass and chlorophyll contents
OsFTIP7	Os05g0370600	LOC_Os05g30750	chlorophyll content	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	Loss of function of OsFTIP7 reduced the toxicity of the NPs of CuO and ZnO to the seedlings by accumulating more biomass and chlorophyll contents
OsFTIP7	Os05g0370600	LOC_Os05g30750	auxin biosynthesis	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice
OsFTIP7	Os05g0370600	LOC_Os05g30750	auxin biosynthesis	OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice	Taken together, the results substantiate that OsFTIP7 is involved in metallic oxide nanoparticle-mediated physiological and biochemical changes by negatively regulating auxin biosynthesis in rice
OsFTL1	Os01g0218500	LOC_Os01g11940	panicle	Genome-wide expression quantitative trait locus studies facilitate isolation of causal genes controlling panicle structure	By combining pQTL and eQTL data, two genes were identified as controlling panicle structure: OsMADS18 modulates the average length of the primary rachis and OsFTL1 has pleiotropic effects on the total number of secondary rachides, number of grains per panicle, plant height and the length of flag leaves
OsFTL1	Os01g0218500	LOC_Os01g11940	grains per panicle	Genome-wide expression quantitative trait locus studies facilitate isolation of causal genes controlling panicle structure	By combining pQTL and eQTL data, two genes were identified as controlling panicle structure: OsMADS18 modulates the average length of the primary rachis and OsFTL1 has pleiotropic effects on the total number of secondary rachides, number of grains per panicle, plant height and the length of flag leaves
OsFTL1	Os01g0218500	LOC_Os01g11940	height	Genome-wide expression quantitative trait locus studies facilitate isolation of causal genes controlling panicle structure	By combining pQTL and eQTL data, two genes were identified as controlling panicle structure: OsMADS18 modulates the average length of the primary rachis and OsFTL1 has pleiotropic effects on the total number of secondary rachides, number of grains per panicle, plant height and the length of flag leaves
OsFTL1	Os01g0218500	LOC_Os01g11940	plant height	Genome-wide expression quantitative trait locus studies facilitate isolation of causal genes controlling panicle structure	By combining pQTL and eQTL data, two genes were identified as controlling panicle structure: OsMADS18 modulates the average length of the primary rachis and OsFTL1 has pleiotropic effects on the total number of secondary rachides, number of grains per panicle, plant height and the length of flag leaves
OsFTL10	Os05g0518000	LOC_Os05g44180	seedlings	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	The expression level of OsFTL10 was high in young seedlings and shown to be induced by GA3 and drought stress
OsFTL10	Os05g0518000	LOC_Os05g44180	drought	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.
OsFTL10	Os05g0518000	LOC_Os05g44180	drought	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	The expression level of OsFTL10 was high in young seedlings and shown to be induced by GA3 and drought stress
OsFTL10	Os05g0518000	LOC_Os05g44180	drought	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	Further experiments revealed that constitutive expression of OsFTL10 improved the drought tolerance of transgenic plants by stimulating the expression of drought responsive genes
OsFTL10	Os05g0518000	LOC_Os05g44180	tolerance	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.
OsFTL10	Os05g0518000	LOC_Os05g44180	tolerance	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	Further experiments revealed that constitutive expression of OsFTL10 improved the drought tolerance of transgenic plants by stimulating the expression of drought responsive genes
OsFTL10	Os05g0518000	LOC_Os05g44180	drought tolerance	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.
OsFTL10	Os05g0518000	LOC_Os05g44180	drought tolerance	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	Further experiments revealed that constitutive expression of OsFTL10 improved the drought tolerance of transgenic plants by stimulating the expression of drought responsive genes
OsFTL10	Os05g0518000	LOC_Os05g44180	stress	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	The expression level of OsFTL10 was high in young seedlings and shown to be induced by GA3 and drought stress
OsFTL10	Os05g0518000	LOC_Os05g44180	cytoplasm	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	The OsFTL10 protein was also detected in both nucleus and cytoplasm
OsFTL10	Os05g0518000	LOC_Os05g44180	nucleus	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	The OsFTL10 protein was also detected in both nucleus and cytoplasm
OsFTL10	Os05g0518000	LOC_Os05g44180	drought stress	Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L.	The expression level of OsFTL10 was high in young seedlings and shown to be induced by GA3 and drought stress
OsFTL12	Os06g0552900	LOC_Os06g35940	architecture	OsFTL12, a member of FT-like family, modulates the heading date and plant architecture by florigen repression complex in rice.	 Here, we show that OsFTL12 plays an antagonistic function against Hd3a and RFT1 to modulate the heading date and plant architecture in rice
OsFTL12	Os06g0552900	LOC_Os06g35940	heading date	OsFTL12, a member of FT-like family, modulates the heading date and plant architecture by florigen repression complex in rice.	 Here, we show that OsFTL12 plays an antagonistic function against Hd3a and RFT1 to modulate the heading date and plant architecture in rice
OsFTL12	Os06g0552900	LOC_Os06g35940	heading date	OsFTL12, a member of FT-like family, modulates the heading date and plant architecture by florigen repression complex in rice.	 Unlike Hd3a and RFT1, OsFTL12 is not regulated by daylength and highly expressed in both SD and LD conditions, and delays the heading date under either SD or LD conditions
OsFTL12	Os06g0552900	LOC_Os06g35940	plant architecture	OsFTL12, a member of FT-like family, modulates the heading date and plant architecture by florigen repression complex in rice.	 Here, we show that OsFTL12 plays an antagonistic function against Hd3a and RFT1 to modulate the heading date and plant architecture in rice
OsFTL4	Os09g0513500	LOC_Os09g33850	drought	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 An analysis of the effects of simulated drought stress suggested that silencing OsFTL4 enhances drought tolerance by decreasing stomatal conductance and water loss
OsFTL4	Os09g0513500	LOC_Os09g33850	drought	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 These results indicate that OsFTL4 helps integrate the flowering process and the drought response in rice
OsFTL4	Os09g0513500	LOC_Os09g33850	tolerance	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 An analysis of the effects of simulated drought stress suggested that silencing OsFTL4 enhances drought tolerance by decreasing stomatal conductance and water loss
OsFTL4	Os09g0513500	LOC_Os09g33850	nucleus	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 Additionally, OsFTL4 was mainly expressed in the vascular tissue, with the resulting OsFTL4 protein localized in both the nucleus and cytoplasm
OsFTL4	Os09g0513500	LOC_Os09g33850	drought tolerance	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 An analysis of the effects of simulated drought stress suggested that silencing OsFTL4 enhances drought tolerance by decreasing stomatal conductance and water loss
OsFTL4	Os09g0513500	LOC_Os09g33850	stress	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 An analysis of the effects of simulated drought stress suggested that silencing OsFTL4 enhances drought tolerance by decreasing stomatal conductance and water loss
OsFTL4	Os09g0513500	LOC_Os09g33850	cytoplasm	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 Additionally, OsFTL4 was mainly expressed in the vascular tissue, with the resulting OsFTL4 protein localized in both the nucleus and cytoplasm
OsFTL4	Os09g0513500	LOC_Os09g33850	stomatal	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 An analysis of the effects of simulated drought stress suggested that silencing OsFTL4 enhances drought tolerance by decreasing stomatal conductance and water loss
OsFTL4	Os09g0513500	LOC_Os09g33850	flowering	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 These results indicate that OsFTL4 helps integrate the flowering process and the drought response in rice
OsFTL4	Os09g0513500	LOC_Os09g33850	drought stress	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 An analysis of the effects of simulated drought stress suggested that silencing OsFTL4 enhances drought tolerance by decreasing stomatal conductance and water loss
OsFTL4	Os09g0513500	LOC_Os09g33850	water loss	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 An analysis of the effects of simulated drought stress suggested that silencing OsFTL4 enhances drought tolerance by decreasing stomatal conductance and water loss
OsFTL4	Os09g0513500	LOC_Os09g33850	drought stress 	OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.).	 An analysis of the effects of simulated drought stress suggested that silencing OsFTL4 enhances drought tolerance by decreasing stomatal conductance and water loss
OsFtsH2	Os06g0669400	LOC_Os06g45820	leaf	Involvement of Abscisic Acid in PSII Photodamage and D1 Protein Turnover for Light-Induced Premature Senescence of Rice Flag Leaves.	OsFtsH2 transcriptional expression possibly played an important role in the regulation of D1 protein turnover and PSII repair cycle in relation to ABA mediated leaf senescence
OsFtsH2	Os06g0669400	LOC_Os06g45820	ABA	Involvement of Abscisic Acid in PSII Photodamage and D1 Protein Turnover for Light-Induced Premature Senescence of Rice Flag Leaves.	OsFtsH2 transcriptional expression possibly played an important role in the regulation of D1 protein turnover and PSII repair cycle in relation to ABA mediated leaf senescence
OsFtsH2	Os06g0669400	LOC_Os06g45820	senescence	Involvement of Abscisic Acid in PSII Photodamage and D1 Protein Turnover for Light-Induced Premature Senescence of Rice Flag Leaves.	OsFtsH2 transcriptional expression possibly played an important role in the regulation of D1 protein turnover and PSII repair cycle in relation to ABA mediated leaf senescence
OsFtsH2	Os06g0669400	LOC_Os06g45820	leaf senescence	Involvement of Abscisic Acid in PSII Photodamage and D1 Protein Turnover for Light-Induced Premature Senescence of Rice Flag Leaves.	OsFtsH2 transcriptional expression possibly played an important role in the regulation of D1 protein turnover and PSII repair cycle in relation to ABA mediated leaf senescence
OsFtsH2	Os06g0669400	LOC_Os06g45820	ABA	Involvement of Abscisic Acid in PSII Photodamage and D1 Protein Turnover for Light-Induced Premature Senescence of Rice Flag Leaves.	OsFtsH2 transcriptional expression possibly played an important role in the regulation of D1 protein turnover and PSII repair cycle in relation to ABA mediated leaf senescence
OsFtsH2	Os06g0669400	LOC_Os06g45820	chloroplast	The essential roles of OsFtsH2 in developing the chloroplast of rice.	The essential roles of OsFtsH2 in developing the chloroplast of rice.
OsFtsH2	Os06g0669400	LOC_Os06g45820	chloroplast	The essential roles of OsFtsH2 in developing the chloroplast of rice.	OsFtsH2 was located in the chloroplast and preferentially expressed in green tissues
OsFtsH2	Os06g0669400	LOC_Os06g45820	chloroplast	The essential roles of OsFtsH2 in developing the chloroplast of rice.	CONCLUSIONS: Overall, the results suggested OsFtsH2 to be essential for chloroplast development in rice
OsFtsH2	Os06g0669400	LOC_Os06g45820	development	The essential roles of OsFtsH2 in developing the chloroplast of rice.	CONCLUSIONS: Overall, the results suggested OsFtsH2 to be essential for chloroplast development in rice
OsFtsH2	Os06g0669400	LOC_Os06g45820	signal transduction	The essential roles of OsFtsH2 in developing the chloroplast of rice.	RNA sequencing analysis indicated that many biological processes such as photosynthesis-related pathways and plant hormone signal transduction were significantly affected in osftsh2 mutants
OsFtsH2	Os06g0669400	LOC_Os06g45820	chloroplast development	The essential roles of OsFtsH2 in developing the chloroplast of rice.	CONCLUSIONS: Overall, the results suggested OsFtsH2 to be essential for chloroplast development in rice
Osfuct	Os08g0472600	LOC_Os08g36840	pollen	Lack of the 1,3-Fucosyltransferase Gene (Osfuct) Affects Anther Development and Pollen Viability in Rice.	We characterized an Osfuct mutant that displayed pleiotropic developmental defects, such as impaired anther and pollen development, diminished growth, shorter plant height, fewer tillers, and shorter panicle length and internodes under field conditions
Osfuct	Os08g0472600	LOC_Os08g36840	panicle	Lack of the 1,3-Fucosyltransferase Gene (Osfuct) Affects Anther Development and Pollen Viability in Rice.	We characterized an Osfuct mutant that displayed pleiotropic developmental defects, such as impaired anther and pollen development, diminished growth, shorter plant height, fewer tillers, and shorter panicle length and internodes under field conditions
Osfuct	Os08g0472600	LOC_Os08g36840	anther	Lack of the 1,3-Fucosyltransferase Gene (Osfuct) Affects Anther Development and Pollen Viability in Rice.	We characterized an Osfuct mutant that displayed pleiotropic developmental defects, such as impaired anther and pollen development, diminished growth, shorter plant height, fewer tillers, and shorter panicle length and internodes under field conditions
Osfuct	Os08g0472600	LOC_Os08g36840	plant height	Lack of the 1,3-Fucosyltransferase Gene (Osfuct) Affects Anther Development and Pollen Viability in Rice.	We characterized an Osfuct mutant that displayed pleiotropic developmental defects, such as impaired anther and pollen development, diminished growth, shorter plant height, fewer tillers, and shorter panicle length and internodes under field conditions
Osfuct	Os08g0472600	LOC_Os08g36840	pollen development	Lack of the 1,3-Fucosyltransferase Gene (Osfuct) Affects Anther Development and Pollen Viability in Rice.	We characterized an Osfuct mutant that displayed pleiotropic developmental defects, such as impaired anther and pollen development, diminished growth, shorter plant height, fewer tillers, and shorter panicle length and internodes under field conditions
OsFUG1	Os03g0344300	LOC_Os03g22400	panicle architecture	Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases.	Data suggests a role for OsFUG1 in seed-related stages that influence panicle architecture and fertility
OsFUG1	Os03g0344300	LOC_Os03g22400	fertility	Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases.	Data suggests a role for OsFUG1 in seed-related stages that influence panicle architecture and fertility
OsFUG1	Os03g0344300	LOC_Os03g22400	internode elongation	Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases.	Although the differences are not statistically significant, both OsELS1 and OsFUG1 KO lines showed decreased internode elongation compared to the respective controls
OsFUG1	Os03g0344300	LOC_Os03g22400	development	Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases.	OsFUG1 KO also significantly impacts development and fertility
OsFUG1	Os03g0344300	LOC_Os03g22400	fertility	Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases.	OsFUG1 KO also significantly impacts development and fertility
OsFWL4	Os03g0829900	LOC_Os03g61440	seedlings	The rice &quot;fruit-weight 2.2-like&quot; gene family member OsFWL4 is involved in the translocation of cadmium from roots to shoots.	Real-time PCR analysis showed that OsFWL4 expression was induced by CdCl2stress in rice seedlings
OsFWL4	Os03g0829900	LOC_Os03g61440	resistance	The rice &quot;fruit-weight 2.2-like&quot; gene family member OsFWL4 is involved in the translocation of cadmium from roots to shoots.	2-like&quot; (OsFWL) affects Cd resistance in yeast, and OsFWL4 mediates the translocation of Cd from roots to shoots
OsFWL4	Os03g0829900	LOC_Os03g61440	resistance	The rice &quot;fruit-weight 2.2-like&quot; gene family member OsFWL4 is involved in the translocation of cadmium from roots to shoots.	The Cd contents of OsFWL3-, -4-, -6- and -7-transformed Cd(II)-sensitive yeast mutant ycf1 cells were strongly decreased compared with those of empty vector, with the strongest resistance to Cd observed in cells expressing OsFWL4
OsFWL4	Os03g0829900	LOC_Os03g61440	resistance	The rice &quot;fruit-weight 2.2-like&quot; gene family member OsFWL4 is involved in the translocation of cadmium from roots to shoots.	Evaluation of truncated and site-directed mutation derivatives revealed that the CCXXG motifs near the second transmembrane region of OsFWL4 are involved in Cd resistance in yeast
OsFWL4	Os03g0829900	LOC_Os03g61440	transporter	The rice &quot;fruit-weight 2.2-like&quot; gene family member OsFWL4 is involved in the translocation of cadmium from roots to shoots.	These results suggest that OsFWL4 might act directly as a transporter and is involved in the translocation of Cd from roots to shoots in rice
OsFWL4	Os03g0829900	LOC_Os03g61440	cadmium	The rice &quot;fruit-weight 2.2-like&quot; gene family member OsFWL4 is involved in the translocation of cadmium from roots to shoots.	The rice &quot;fruit-weight 2.2-like&quot; gene family member OsFWL4 is involved in the translocation of cadmium from roots to shoots.
OsFWL6|OsCNR10	Os03g0830200	LOC_Os03g61470	panicle	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 We demonstrated that OsPAGN1 can interact directly with OsCNR10 (CELL NUMBER REGULATOR10), which negatively regulates the number of rice grains per panicle
OsFWL6|OsCNR10	Os03g0830200	LOC_Os03g61470	grains per panicle	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 We demonstrated that OsPAGN1 can interact directly with OsCNR10 (CELL NUMBER REGULATOR10), which negatively regulates the number of rice grains per panicle
OsFWL7	Os03g0830500	LOC_Os03g61500	growth	Mutation in OsFWL7 Affects Cadmium and Micronutrient Metal Accumulation in Rice.	 Additionally, the accumulation of micronutrient metals, including Mn, Cu, and Fe, was lower in osfwl7 mutants than in the wildtype plants under normal growth conditions
OsFWL7	Os03g0830500	LOC_Os03g61500	transporter	Mutation in OsFWL7 Affects Cadmium and Micronutrient Metal Accumulation in Rice.	 Moreover, the osfwl7 mutation affects the expression of several heavy metal transporter genes
OsFWL7	Os03g0830500	LOC_Os03g61500	metal transport	Mutation in OsFWL7 Affects Cadmium and Micronutrient Metal Accumulation in Rice.	 Moreover, the osfwl7 mutation affects the expression of several heavy metal transporter genes
OsFWL7	Os03g0830500	LOC_Os03g61500	cadmium	Mutation in OsFWL7 Affects Cadmium and Micronutrient Metal Accumulation in Rice.	Mutation in OsFWL7 Affects Cadmium and Micronutrient Metal Accumulation in Rice.
OsFY	Os01g0951000	LOC_Os01g72220	flower	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY
OsFY	Os01g0951000	LOC_Os01g72220	flowering time	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY
OsFY	Os01g0951000	LOC_Os01g72220	flower	OsFY, a Homolog of AtFY, Encodes a Protein that Can Interact with OsFCA-γ in Rice (Oryza sativa L.)	In this work, we cloned the cDNA of the autonomous flowering pathway gene OsFY from rice
Osg1	Os01g0947700	LOC_Os01g71930	anther	Molecular Cloning and Characterization of a Novel β-1,3-Glucanase Gene from Rice	We isolated a cDNA for β-1,3-glucanase from rice anther and named it Oryza sativa glucanase 1 (Osg1)
Osg1	Os01g0947700	LOC_Os01g71930	anther	Molecular Cloning and Characterization of a Novel β-1,3-Glucanase Gene from Rice	RT-PCR analysis revealed that Osg1 transcripts were present in leaves, roots, and anthers
Osg1	Os01g0947700	LOC_Os01g71930	leaf	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development	Osg1 was found to be expressed throughout the plant and highly expressed in florets, leaf sheaths, and leaf blades
Osg1	Os01g0947700	LOC_Os01g71930	sheath	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development	Osg1 was found to be expressed throughout the plant and highly expressed in florets, leaf sheaths, and leaf blades
Osg1	Os01g0947700	LOC_Os01g71930	anther	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development	The pollen mother cells appeared to be normal in Osg1-RI plants, but callose degradation was disrupted around the microspores in the anther locules of the Osg1-RI plants at the early microspore stage
Osg1	Os01g0947700	LOC_Os01g71930	root	Molecular Cloning and Characterization of a Novel β-1,3-Glucanase Gene from Rice	RT-PCR analysis revealed that Osg1 transcripts were present in leaves, roots, and anthers
Osg1	Os01g0947700	LOC_Os01g71930	microspore	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development	Investigations using real-time PCR, immunocytochemical analysis, and a GUS-reporter gene driven by the Osg1 promoter indicated that Osg1 was mainly expressed at the late meiosis, early microspore, and middle microspore stages in the florets
Osg1	Os01g0947700	LOC_Os01g71930	microspore	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development	The pollen mother cells appeared to be normal in Osg1-RI plants, but callose degradation was disrupted around the microspores in the anther locules of the Osg1-RI plants at the early microspore stage
Osg1	Os01g0947700	LOC_Os01g71930	sterility	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development	The silencing of Osg1 resulted in male sterility
Osg1	Os01g0947700	LOC_Os01g71930	pollen	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development	The pollen mother cells appeared to be normal in Osg1-RI plants, but callose degradation was disrupted around the microspores in the anther locules of the Osg1-RI plants at the early microspore stage
Osg1	Os01g0947700	LOC_Os01g71930	pollen	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development
Osg1	Os01g0947700	LOC_Os01g71930	meiosis	A rice beta-1,3-glucanase gene Osg1 is required for callose degradation in pollen development	Investigations using real-time PCR, immunocytochemical analysis, and a GUS-reporter gene driven by the Osg1 promoter indicated that Osg1 was mainly expressed at the late meiosis, early microspore, and middle microspore stages in the florets
OsG1L1	Os02g0166800	LOC_Os02g07030	development	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Here, we report that osg1l1 and osg1l2 loss-of-function CRISPR mutants have similar phenotypes to the phenotype of the previously published taw1 mutant, suggesting that these genes might act on related pathways during inflorescence development
OsG1L1	Os02g0166800	LOC_Os02g07030	inflorescence	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.
OsG1L1	Os02g0166800	LOC_Os02g07030	inflorescence	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Here, we report that osg1l1 and osg1l2 loss-of-function CRISPR mutants have similar phenotypes to the phenotype of the previously published taw1 mutant, suggesting that these genes might act on related pathways during inflorescence development
OsG1L1	Os02g0166800	LOC_Os02g07030	branching	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.
OsG1L1	Os02g0166800	LOC_Os02g07030	inflorescence development	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Here, we report that osg1l1 and osg1l2 loss-of-function CRISPR mutants have similar phenotypes to the phenotype of the previously published taw1 mutant, suggesting that these genes might act on related pathways during inflorescence development
OsG1L2	Os06g0672400	LOC_Os06g46030	development	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Here, we report that osg1l1 and osg1l2 loss-of-function CRISPR mutants have similar phenotypes to the phenotype of the previously published taw1 mutant, suggesting that these genes might act on related pathways during inflorescence development
OsG1L2	Os06g0672400	LOC_Os06g46030	development	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Transcriptome analysis of the osg1l2 mutant suggested interactions of OsG1L2 with other known inflorescence architecture regulators and the data sets were used for the construction of a gene regulatory network (GRN), proposing interactions among genes potentially involved in controlling inflorescence development in rice
OsG1L2	Os06g0672400	LOC_Os06g46030	inflorescence	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.
OsG1L2	Os06g0672400	LOC_Os06g46030	inflorescence	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Here, we report that osg1l1 and osg1l2 loss-of-function CRISPR mutants have similar phenotypes to the phenotype of the previously published taw1 mutant, suggesting that these genes might act on related pathways during inflorescence development
OsG1L2	Os06g0672400	LOC_Os06g46030	inflorescence	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Transcriptome analysis of the osg1l2 mutant suggested interactions of OsG1L2 with other known inflorescence architecture regulators and the data sets were used for the construction of a gene regulatory network (GRN), proposing interactions among genes potentially involved in controlling inflorescence development in rice
OsG1L2	Os06g0672400	LOC_Os06g46030	architecture	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Transcriptome analysis of the osg1l2 mutant suggested interactions of OsG1L2 with other known inflorescence architecture regulators and the data sets were used for the construction of a gene regulatory network (GRN), proposing interactions among genes potentially involved in controlling inflorescence development in rice
OsG1L2	Os06g0672400	LOC_Os06g46030	inflorescence architecture	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Transcriptome analysis of the osg1l2 mutant suggested interactions of OsG1L2 with other known inflorescence architecture regulators and the data sets were used for the construction of a gene regulatory network (GRN), proposing interactions among genes potentially involved in controlling inflorescence development in rice
OsG1L2	Os06g0672400	LOC_Os06g46030	branching	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.
OsG1L2	Os06g0672400	LOC_Os06g46030	inflorescence development	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Here, we report that osg1l1 and osg1l2 loss-of-function CRISPR mutants have similar phenotypes to the phenotype of the previously published taw1 mutant, suggesting that these genes might act on related pathways during inflorescence development
OsG1L2	Os06g0672400	LOC_Os06g46030	inflorescence development	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	 Transcriptome analysis of the osg1l2 mutant suggested interactions of OsG1L2 with other known inflorescence architecture regulators and the data sets were used for the construction of a gene regulatory network (GRN), proposing interactions among genes potentially involved in controlling inflorescence development in rice
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	 ga 	A role of OsGA20ox1 , encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice	Analysis of mRNA and the endogenous GAs reveal that biologically active GA level is increased by up-regulation of the OsGA20ox1 gene in B142
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	gibberellin	OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice	Within this mapped region, we identified the gene OsGA20ox1, which is related to gibberellin (GA) biosynthesis
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	dwarf	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Consistent with the dwarf phenotype of gd1, expression of the gibberelic acid (GA) inactivation gene OsGA2ox3 is increased dramatically, accompanied by reduced expression of GA biosynthetic genes including OsGA20ox1, OsGA20ox2 and OsGA3ox2 in gd1, resulting in a decreased endogenous GA(4) level
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	seedling	OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice	These results indicate that OsGA20ox1 is a strong candidate gene for major QTL controlling seedling vigor in rice
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	seedling	OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice	OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	gibberellin	A role of OsGA20ox1 , encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice	A role of OsGA20ox1 , encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	 ga 	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Consistent with the dwarf phenotype of gd1, expression of the gibberelic acid (GA) inactivation gene OsGA2ox3 is increased dramatically, accompanied by reduced expression of GA biosynthetic genes including OsGA20ox1, OsGA20ox2 and OsGA3ox2 in gd1, resulting in a decreased endogenous GA(4) level
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	panicle	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain number	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	yield	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	cytokinin	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	cytokinin	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	We propose that cytokinin activity increased due to a KNOX-mediated transcriptional feedback loop resulting from the higher GNP1 transcript levels, in turn leading to increased expression of the GA catabolism genes GA2oxs and reduced GA1 and GA3 accumulation
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	inflorescence	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	Sequence variations in its promoter region increased the levels of GNP1 transcripts, which were enriched in the apical regions of inflorescence meristems in NIL-GNP1TQ
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	 ga 	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	We propose that cytokinin activity increased due to a KNOX-mediated transcriptional feedback loop resulting from the higher GNP1 transcript levels, in turn leading to increased expression of the GA catabolism genes GA2oxs and reduced GA1 and GA3 accumulation
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	GA	The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	We propose that cytokinin activity increased due to a KNOX-mediated transcriptional feedback loop resulting from the higher GNP1 transcript levels, in turn leading to increased expression of the GA catabolism genes GA2oxs and reduced GA1 and GA3 accumulation
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	leaf	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The sdsfl1 mutant demonstrated some distinguished structural alterations, including shorter plant height and flag leaf length, increased tiller numbers and flag leaf width, and decreased panicle length compared with those of wild type (WT)
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	leaf	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The results thus offer a visible foundation for the molecular and physiological analysis of the SDSFL1 gene, which might participate in various functional pathways for controlling plant height and leaf length in rice breeding
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	panicle	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The sdsfl1 mutant demonstrated some distinguished structural alterations, including shorter plant height and flag leaf length, increased tiller numbers and flag leaf width, and decreased panicle length compared with those of wild type (WT)
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	tiller	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The sdsfl1 mutant demonstrated some distinguished structural alterations, including shorter plant height and flag leaf length, increased tiller numbers and flag leaf width, and decreased panicle length compared with those of wild type (WT)
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	photosynthesis	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 Photosynthesis analysis showed that the photosynthetic rate (Pn), stomatal conductance (Gs), and intercellular CO2 concentration (Ci) were significantly increased in sdsfl1
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	stomatal	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 Photosynthesis analysis showed that the photosynthetic rate (Pn), stomatal conductance (Gs), and intercellular CO2 concentration (Ci) were significantly increased in sdsfl1
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	breeding	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The results thus offer a visible foundation for the molecular and physiological analysis of the SDSFL1 gene, which might participate in various functional pathways for controlling plant height and leaf length in rice breeding
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	height	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The sdsfl1 mutant demonstrated some distinguished structural alterations, including shorter plant height and flag leaf length, increased tiller numbers and flag leaf width, and decreased panicle length compared with those of wild type (WT)
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	height	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The results thus offer a visible foundation for the molecular and physiological analysis of the SDSFL1 gene, which might participate in various functional pathways for controlling plant height and leaf length in rice breeding
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	plant height	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The sdsfl1 mutant demonstrated some distinguished structural alterations, including shorter plant height and flag leaf length, increased tiller numbers and flag leaf width, and decreased panicle length compared with those of wild type (WT)
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	plant height	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The results thus offer a visible foundation for the molecular and physiological analysis of the SDSFL1 gene, which might participate in various functional pathways for controlling plant height and leaf length in rice breeding
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	tiller number	Rice SDSFL1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	 The sdsfl1 mutant demonstrated some distinguished structural alterations, including shorter plant height and flag leaf length, increased tiller numbers and flag leaf width, and decreased panicle length compared with those of wild type (WT)
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	panicle	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 Although the NAL1 and GNP1 genes regulating the rice GNP and grain yield have been cloned, their allelic diversity, functional differences in rice germplasms, and effects of their combination on GNP and grain yield remain unclear
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Our results indicated that the GNP1 and NAL1 exhibited obvious differentiation and their combinations can significantly increase the grain yield in geng rice cultivars
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain number	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 Although the NAL1 and GNP1 genes regulating the rice GNP and grain yield have been cloned, their allelic diversity, functional differences in rice germplasms, and effects of their combination on GNP and grain yield remain unclear
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Our results indicated that the GNP1 and NAL1 exhibited obvious differentiation and their combinations can significantly increase the grain yield in geng rice cultivars
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 Although the NAL1 and GNP1 genes regulating the rice GNP and grain yield have been cloned, their allelic diversity, functional differences in rice germplasms, and effects of their combination on GNP and grain yield remain unclear
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	Our results indicated that the GNP1 and NAL1 exhibited obvious differentiation and their combinations can significantly increase the grain yield in geng rice cultivars
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	yield	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 These observations provide insights into the molecular basis of the GNP and may be useful for rice breeding of high yield potential by pyramiding GNP1 and NAL1
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	breeding	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice.	 These observations provide insights into the molecular basis of the GNP and may be useful for rice breeding of high yield potential by pyramiding GNP1 and NAL1
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	panicle	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	panicle	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our previous study indicated that the gene GNP1 encoding gibberellin biosynthesis gene GA20ox1 affects grain number per panicle (GNP) in rice, thus resulting in increase of grain yield
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our previous study indicated that the gene GNP1 encoding gibberellin biosynthesis gene GA20ox1 affects grain number per panicle (GNP) in rice, thus resulting in increase of grain yield
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 To clarify GNP1 effect on sink, source and flow in regulating rice grain yield, we compared Lemont, a japonica (geng) cultivar, with its near-isogenic line (NIL-GNP1 TQ) in Lemont background with introgression of the allele at GNP1 from Teqing, a high-yielding indica (xian) cultivar
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our results indicated that significantly increased GNP from introgression of GNP1 TQ into Lemont did not highly significantly improve grain yield of NIL-GNP1 TQ as expected, due primarily to significant low sink activities in IS and possible insufficient source supply which didn't fully meet the increased sink capacity
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain number	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain number	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our previous study indicated that the gene GNP1 encoding gibberellin biosynthesis gene GA20ox1 affects grain number per panicle (GNP) in rice, thus resulting in increase of grain yield
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	gibberellin	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our previous study indicated that the gene GNP1 encoding gibberellin biosynthesis gene GA20ox1 affects grain number per panicle (GNP) in rice, thus resulting in increase of grain yield
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain yield	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our previous study indicated that the gene GNP1 encoding gibberellin biosynthesis gene GA20ox1 affects grain number per panicle (GNP) in rice, thus resulting in increase of grain yield
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain yield	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 To clarify GNP1 effect on sink, source and flow in regulating rice grain yield, we compared Lemont, a japonica (geng) cultivar, with its near-isogenic line (NIL-GNP1 TQ) in Lemont background with introgression of the allele at GNP1 from Teqing, a high-yielding indica (xian) cultivar
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain yield	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our results indicated that significantly increased GNP from introgression of GNP1 TQ into Lemont did not highly significantly improve grain yield of NIL-GNP1 TQ as expected, due primarily to significant low sink activities in IS and possible insufficient source supply which didn't fully meet the increased sink capacity
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	yield	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our previous study indicated that the gene GNP1 encoding gibberellin biosynthesis gene GA20ox1 affects grain number per panicle (GNP) in rice, thus resulting in increase of grain yield
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	yield	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our results indicated that significantly increased GNP from introgression of GNP1 TQ into Lemont did not highly significantly improve grain yield of NIL-GNP1 TQ as expected, due primarily to significant low sink activities in IS and possible insufficient source supply which didn't fully meet the increased sink capacity
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	Gibberellin	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our previous study indicated that the gene GNP1 encoding gibberellin biosynthesis gene GA20ox1 affects grain number per panicle (GNP) in rice, thus resulting in increase of grain yield
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	gibberellin biosynthesis	Pleiotropic Effect of GNP1 Underlying Grain Number per Panicle on Sink, Source and Flow in Rice 	 Our previous study indicated that the gene GNP1 encoding gibberellin biosynthesis gene GA20ox1 affects grain number per panicle (GNP) in rice, thus resulting in increase of grain yield
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	 ga 	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 Meanwhile, the expression of GA synthesis-related gene OsGA20ox1 was downregulated, whereas the expression of GA inactivation-related genes was upregulated in ipa1-NIL seeds
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	GA	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 Meanwhile, the expression of GA synthesis-related gene OsGA20ox1 was downregulated, whereas the expression of GA inactivation-related genes was upregulated in ipa1-NIL seeds
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	GA inactivation	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 Meanwhile, the expression of GA synthesis-related gene OsGA20ox1 was downregulated, whereas the expression of GA inactivation-related genes was upregulated in ipa1-NIL seeds
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain	Time-ordering japonica/geng genomes analysis indicates the importance of large structural variants in rice breeding.	 Further, the results demonstrated genomic and genetic evidence that the SV in the promoter of LTG1 is accounting for chilling sensitivity, and the increased copy numbers of GNP1 were associated with positive effects on grain number
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	grain number	Time-ordering japonica/geng genomes analysis indicates the importance of large structural variants in rice breeding.	 Further, the results demonstrated genomic and genetic evidence that the SV in the promoter of LTG1 is accounting for chilling sensitivity, and the increased copy numbers of GNP1 were associated with positive effects on grain number
OsGA20ox1|GNP1|SDSFL1	Os03g0856700	LOC_Os03g63970	chilling	Time-ordering japonica/geng genomes analysis indicates the importance of large structural variants in rice breeding.	 Further, the results demonstrated genomic and genetic evidence that the SV in the promoter of LTG1 is accounting for chilling sensitivity, and the increased copy numbers of GNP1 were associated with positive effects on grain number
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	plant stature	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	disease development	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	dwarf	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	Transgenic plants overexpressing OsGA20ox3 showed phenotypes similar to those of the 17S-14 mutant, and the RNA interference (RNAi) lines that had decreased OsGA20ox3 expression exhibited a semidwarf phenotype.
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	leaf	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	Expression of OsGA20ox3 was detected in the leaves and roots of young seedlings, immature panicles, anthers, and pollens, based on beta-glucuronidase (GUS) activity staining in transgenic plants expressing the OsGA20ox3 promoter fused to the GUS gene.
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	root	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	Expression of OsGA20ox3 was detected in the leaves and roots of young seedlings, immature panicles, anthers, and pollens, based on beta-glucuronidase (GUS) activity staining in transgenic plants expressing the OsGA20ox3 promoter fused to the GUS gene.
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	seedling	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	Expression of OsGA20ox3 was detected in the leaves and roots of young seedlings, immature panicles, anthers, and pollens, based on beta-glucuronidase (GUS) activity staining in transgenic plants expressing the OsGA20ox3 promoter fused to the GUS gene.
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	panicle	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	Expression of OsGA20ox3 was detected in the leaves and roots of young seedlings, immature panicles, anthers, and pollens, based on beta-glucuronidase (GUS) activity staining in transgenic plants expressing the OsGA20ox3 promoter fused to the GUS gene.
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	anther	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	Expression of OsGA20ox3 was detected in the leaves and roots of young seedlings, immature panicles, anthers, and pollens, based on beta-glucuronidase (GUS) activity staining in transgenic plants expressing the OsGA20ox3 promoter fused to the GUS gene.
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	pollen	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	Expression of OsGA20ox3 was detected in the leaves and roots of young seedlings, immature panicles, anthers, and pollens, based on beta-glucuronidase (GUS) activity staining in transgenic plants expressing the OsGA20ox3 promoter fused to the GUS gene.
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	bacterial blight	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	The OsGA20ox3 RNAi lines showed enhanced resistance against rice pathogens Magnaporthe oryzae (causing rice blast) and Xanthomonas oryzae pv. oryzae (causing bacterial blight) and increased expression of defense-related genes.
OsGA20ox3|GA20ox3	Os07g0169700	LOC_Os07g07420	defense	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice	The OsGA20ox3 RNAi lines showed enhanced resistance against rice pathogens Magnaporthe oryzae (causing rice blast) and Xanthomonas oryzae pv. oryzae (causing bacterial blight) and increased expression of defense-related genes.
OsGA2ox1	Os05g0158600	LOC_Os05g06670	flower	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.)	Unlike the over-expression of OsGA2ox1, which led to a high rate of seed abortion, the H032 mutant retained normal flowering and seed production
OsGA2ox1	Os05g0158600	LOC_Os05g06670	stem	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	Ectopic expression of theOsGA2ox1 cDNA in transgenic rice inhibited stem elongation and the development of reproductive organs
OsGA2ox1	Os05g0158600	LOC_Os05g06670	stem	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	OsGA2ox1was expressed in shoot apex and roots but not in leaves and stems
OsGA2ox1	Os05g0158600	LOC_Os05g06670	stem	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	These observations suggest that OsGA2ox1 controls the level of bioactive GAs in the shoot apical meristem; therefore, reduction in its expression may contribute to the early development of the inflorescence meristem
OsGA2ox1	Os05g0158600	LOC_Os05g06670	meristem	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	These observations suggest that OsGA2ox1 controls the level of bioactive GAs in the shoot apical meristem; therefore, reduction in its expression may contribute to the early development of the inflorescence meristem
OsGA2ox1	Os05g0158600	LOC_Os05g06670	ga	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	We have isolated and characterized a cDNA, designated Oryza sativa GA 2-oxidase 1 (OsGA2ox1) from rice (Oryza sativa L
OsGA2ox1	Os05g0158600	LOC_Os05g06670	ga	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	These results indicate that OsGA2ox1 encodes a GA 2-oxidase, which is functional not only in vitro but also in vivo
OsGA2ox1	Os05g0158600	LOC_Os05g06670	reproductive	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	Ectopic expression of theOsGA2ox1 cDNA in transgenic rice inhibited stem elongation and the development of reproductive organs
OsGA2ox1	Os05g0158600	LOC_Os05g06670	shoot apical meristem	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	These observations suggest that OsGA2ox1 controls the level of bioactive GAs in the shoot apical meristem; therefore, reduction in its expression may contribute to the early development of the inflorescence meristem
OsGA2ox1	Os05g0158600	LOC_Os05g06670	leaf	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	In situ hybridization analysis revealed that OsGA2ox1 mRNA was localized in a ring at the basal region of leaf primordia and young leaves
OsGA2ox1	Os05g0158600	LOC_Os05g06670	shoot	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	OsGA2ox1was expressed in shoot apex and roots but not in leaves and stems
OsGA2ox1	Os05g0158600	LOC_Os05g06670	shoot	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	These observations suggest that OsGA2ox1 controls the level of bioactive GAs in the shoot apical meristem; therefore, reduction in its expression may contribute to the early development of the inflorescence meristem
OsGA2ox1	Os05g0158600	LOC_Os05g06670	root	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	OsGA2ox1was expressed in shoot apex and roots but not in leaves and stems
OsGA2ox1	Os05g0158600	LOC_Os05g06670	seed	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.)	Unlike the over-expression of OsGA2ox1, which led to a high rate of seed abortion, the H032 mutant retained normal flowering and seed production
OsGA2ox1	Os05g0158600	LOC_Os05g06670	inflorescence	Expression of a Gibberellin 2-Oxidase Gene around the Shoot Apex Is Related to Phase Transition in Rice	These observations suggest that OsGA2ox1 controls the level of bioactive GAs in the shoot apical meristem; therefore, reduction in its expression may contribute to the early development of the inflorescence meristem
OsGA2ox1	Os05g0158600	LOC_Os05g06670	seedlings	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGA2ox1	Os05g0158600	LOC_Os05g06670	growth	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice
OsGA2ox1	Os05g0158600	LOC_Os05g06670	tolerance	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice
OsGA2ox1	Os05g0158600	LOC_Os05g06670	tolerance	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGA2ox1	Os05g0158600	LOC_Os05g06670	ga	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	The yeast one-hybrid, qRT-PCR, and transactivation assays showed that both SLR1 and OsGRF6 can bind to the promoter of the active GA catabolic gene OsGA2ox1, where SLR1 promoted and OsGRF6 suppressed OsGA2ox1 expression
OsGA2ox1	Os05g0158600	LOC_Os05g06670	ga	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	At normal temperature, OsGRF6 was responsible for maintaining active GA levels by inhibiting OsGA2ox1
OsGA2ox1	Os05g0158600	LOC_Os05g06670	ga	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGA2ox1	Os05g0158600	LOC_Os05g06670	chilling	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice
OsGA2ox1	Os05g0158600	LOC_Os05g06670	chilling	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGA2ox1	Os05g0158600	LOC_Os05g06670	chilling stress	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGA2ox1	Os05g0158600	LOC_Os05g06670	GA	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	The yeast one-hybrid, qRT-PCR, and transactivation assays showed that both SLR1 and OsGRF6 can bind to the promoter of the active GA catabolic gene OsGA2ox1, where SLR1 promoted and OsGRF6 suppressed OsGA2ox1 expression
OsGA2ox1	Os05g0158600	LOC_Os05g06670	GA	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	At normal temperature, OsGRF6 was responsible for maintaining active GA levels by inhibiting OsGA2ox1
OsGA2ox1	Os05g0158600	LOC_Os05g06670	GA	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGA2ox5	Os07g0103500	LOC_Os07g01340	salinity	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Furthermore, rice and Arabidopsis plants overexpressing OsGA2ox5 were more resistant to high-salinity stress than wild-type plants
OsGA2ox5	Os07g0103500	LOC_Os07g01340	salt stress	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress
OsGA2ox5	Os07g0103500	LOC_Os07g01340	growth	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress
OsGA2ox5	Os07g0103500	LOC_Os07g01340	panicle	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Real-time PCR analysis, along with GUS staining, revealed that OsGA2ox5 is expressed in the roots, culms, leaves, sheaths and panicles of rice
OsGA2ox5	Os07g0103500	LOC_Os07g01340	homeostasis	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	These results suggest that OsGA2ox5 plays important roles in GAs homeostasis, development, gravity responses and stress tolerance in rice
OsGA2ox5	Os07g0103500	LOC_Os07g01340	gibberellin	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress
OsGA2ox5	Os07g0103500	LOC_Os07g01340	salt	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress
OsGA2ox5	Os07g0103500	LOC_Os07g01340	reproductive	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Rice plants overexpressing OsGA2ox5 exhibited dominant dwarf and GA-deficient phenotypes, with shorter stems and later development of reproductive organs than the wild type
OsGA2ox5	Os07g0103500	LOC_Os07g01340	sheath	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Real-time PCR analysis, along with GUS staining, revealed that OsGA2ox5 is expressed in the roots, culms, leaves, sheaths and panicles of rice
OsGA2ox5	Os07g0103500	LOC_Os07g01340	dwarf	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Rice plants overexpressing OsGA2ox5 exhibited dominant dwarf and GA-deficient phenotypes, with shorter stems and later development of reproductive organs than the wild type
OsGA2ox5	Os07g0103500	LOC_Os07g01340	stem	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Rice plants overexpressing OsGA2ox5 exhibited dominant dwarf and GA-deficient phenotypes, with shorter stems and later development of reproductive organs than the wild type
OsGA2ox5	Os07g0103500	LOC_Os07g01340	ga	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	In this study, the gene encoding a GA 2-oxidase of rice, Oryza sativa GA 2-oxidase 5 (OsGA2ox5), was cloned and characterized
OsGA2ox5	Os07g0103500	LOC_Os07g01340	ga	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	The roots of OsGA2ox5-ox plants exhibited increased starch granule accumulation and gravity responses, revealing a role for GA in root starch granule development and gravity responses
OsGA2ox5	Os07g0103500	LOC_Os07g01340	root	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Real-time PCR analysis, along with GUS staining, revealed that OsGA2ox5 is expressed in the roots, culms, leaves, sheaths and panicles of rice
OsGA2ox5	Os07g0103500	LOC_Os07g01340	root	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	The roots of OsGA2ox5-ox plants exhibited increased starch granule accumulation and gravity responses, revealing a role for GA in root starch granule development and gravity responses
OsGA2ox5	Os07g0103500	LOC_Os07g01340	root	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress
OsGA2ox5	Os07g0103500	LOC_Os07g01340	salinity stress	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Furthermore, rice and Arabidopsis plants overexpressing OsGA2ox5 were more resistant to high-salinity stress than wild-type plants
OsGA2ox5	Os07g0103500	LOC_Os07g01340	resistant	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Furthermore, rice and Arabidopsis plants overexpressing OsGA2ox5 were more resistant to high-salinity stress than wild-type plants
OsGA2ox5	Os07g0103500	LOC_Os07g01340	starch	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	The roots of OsGA2ox5-ox plants exhibited increased starch granule accumulation and gravity responses, revealing a role for GA in root starch granule development and gravity responses
OsGA2ox5	Os07g0103500	LOC_Os07g01340	culm	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress	Real-time PCR analysis, along with GUS staining, revealed that OsGA2ox5 is expressed in the roots, culms, leaves, sheaths and panicles of rice
OsGA2ox6	Os04g0522500	LOC_Os04g44150	ga	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.)	BLASTP analysis revealed that OsGA2ox6 belongs to the class III of GA 2-oxidases, which is a novel type of GA2ox that uses C20-GAs (GA(12) and/or GA(53)) as the substrates
OsGA2ox6	Os04g0522500	LOC_Os04g44150	ga	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.)	Interestingly, we found that a GA biosynthesis inhibitor, paclobutrazol, positively regulated the OsGA2ox6 gene
OsGA2ox6	Os04g0522500	LOC_Os04g44150	breeding	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.)	These results indicate that OsGA2ox6 mainly affects plant stature, and the dominant dwarf trait of the H032 mutant can be used as an efficient dwarf resource in rice breeding
OsGA2ox6	Os04g0522500	LOC_Os04g44150	dwarf	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.)	RNAi and ectopic expression analysis of OsGA2ox6 indicated that the dwarf trait and the decreased levels of bioactive GAs in the H032 mutant were a result of the up-regulation of the OsGA2ox6 gene
OsGA2ox6	Os04g0522500	LOC_Os04g44150	dwarf	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.)	These results indicate that OsGA2ox6 mainly affects plant stature, and the dominant dwarf trait of the H032 mutant can be used as an efficient dwarf resource in rice breeding
OsGA2ox8	Os05g0560900	LOC_Os05g48700	seedling	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The plants overexpressing OsGA2ox8 showed reduced lengths of shoots and roots at the seedling stage, but no difference in plant height at the heading stage was observed, which may be due to the interaction of OsGA2ox8 and OsGA20ox1, implying a complex feedback regulation between GA biosynthesis and metabolism in rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	jasmonate	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Importantly, OsGA2ox8 was able to indirectly regulate several genes associated with the anthocyanin and flavonoid biosynthetic pathway and the jasmonic acid (JA) and abscisic acid (ABA) biosynthetic pathway, and overexpression of OsGA2ox8 activated JA signal transduction by inhibiting the expression of jasmonate ZIM domain-containing proteins
OsGA2ox8	Os05g0560900	LOC_Os05g48700	ja	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Importantly, OsGA2ox8 was able to indirectly regulate several genes associated with the anthocyanin and flavonoid biosynthetic pathway and the jasmonic acid (JA) and abscisic acid (ABA) biosynthetic pathway, and overexpression of OsGA2ox8 activated JA signal transduction by inhibiting the expression of jasmonate ZIM domain-containing proteins
OsGA2ox8	Os05g0560900	LOC_Os05g48700	JA	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Importantly, OsGA2ox8 was able to indirectly regulate several genes associated with the anthocyanin and flavonoid biosynthetic pathway and the jasmonic acid (JA) and abscisic acid (ABA) biosynthetic pathway, and overexpression of OsGA2ox8 activated JA signal transduction by inhibiting the expression of jasmonate ZIM domain-containing proteins
OsGA2ox8	Os05g0560900	LOC_Os05g48700	tolerance	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	tolerance	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The overexpression of OsGA2ox8 significantly enhanced the osmotic stress tolerance of transgenic rice plants by increasing the number of osmotic regulators and antioxidants
OsGA2ox8	Os05g0560900	LOC_Os05g48700	abiotic stress	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The OsGA2ox8 protein was localized in the nucleus, cell membrane, and cytoplasm, and was induced in response to various abiotic stresses and phytohormones
OsGA2ox8	Os05g0560900	LOC_Os05g48700	stress	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	stress	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The overexpression of OsGA2ox8 significantly enhanced the osmotic stress tolerance of transgenic rice plants by increasing the number of osmotic regulators and antioxidants
OsGA2ox8	Os05g0560900	LOC_Os05g48700	stress	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	OsGA2ox8 was differentially expressed in the shoots and roots to cope with osmotic stress
OsGA2ox8	Os05g0560900	LOC_Os05g48700	biotic stress	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The OsGA2ox8 protein was localized in the nucleus, cell membrane, and cytoplasm, and was induced in response to various abiotic stresses and phytohormones
OsGA2ox8	Os05g0560900	LOC_Os05g48700	ga	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The plants overexpressing OsGA2ox8 showed reduced lengths of shoots and roots at the seedling stage, but no difference in plant height at the heading stage was observed, which may be due to the interaction of OsGA2ox8 and OsGA20ox1, implying a complex feedback regulation between GA biosynthesis and metabolism in rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	abscisic acid	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Importantly, OsGA2ox8 was able to indirectly regulate several genes associated with the anthocyanin and flavonoid biosynthetic pathway and the jasmonic acid (JA) and abscisic acid (ABA) biosynthetic pathway, and overexpression of OsGA2ox8 activated JA signal transduction by inhibiting the expression of jasmonate ZIM domain-containing proteins
OsGA2ox8	Os05g0560900	LOC_Os05g48700	jasmonic	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Importantly, OsGA2ox8 was able to indirectly regulate several genes associated with the anthocyanin and flavonoid biosynthetic pathway and the jasmonic acid (JA) and abscisic acid (ABA) biosynthetic pathway, and overexpression of OsGA2ox8 activated JA signal transduction by inhibiting the expression of jasmonate ZIM domain-containing proteins
OsGA2ox8	Os05g0560900	LOC_Os05g48700	jasmonic acid	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Importantly, OsGA2ox8 was able to indirectly regulate several genes associated with the anthocyanin and flavonoid biosynthetic pathway and the jasmonic acid (JA) and abscisic acid (ABA) biosynthetic pathway, and overexpression of OsGA2ox8 activated JA signal transduction by inhibiting the expression of jasmonate ZIM domain-containing proteins
OsGA2ox8	Os05g0560900	LOC_Os05g48700	height	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The plants overexpressing OsGA2ox8 showed reduced lengths of shoots and roots at the seedling stage, but no difference in plant height at the heading stage was observed, which may be due to the interaction of OsGA2ox8 and OsGA20ox1, implying a complex feedback regulation between GA biosynthesis and metabolism in rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	plant height	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The plants overexpressing OsGA2ox8 showed reduced lengths of shoots and roots at the seedling stage, but no difference in plant height at the heading stage was observed, which may be due to the interaction of OsGA2ox8 and OsGA20ox1, implying a complex feedback regulation between GA biosynthesis and metabolism in rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	signal transduction	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Importantly, OsGA2ox8 was able to indirectly regulate several genes associated with the anthocyanin and flavonoid biosynthetic pathway and the jasmonic acid (JA) and abscisic acid (ABA) biosynthetic pathway, and overexpression of OsGA2ox8 activated JA signal transduction by inhibiting the expression of jasmonate ZIM domain-containing proteins
OsGA2ox8	Os05g0560900	LOC_Os05g48700	GA	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The plants overexpressing OsGA2ox8 showed reduced lengths of shoots and roots at the seedling stage, but no difference in plant height at the heading stage was observed, which may be due to the interaction of OsGA2ox8 and OsGA20ox1, implying a complex feedback regulation between GA biosynthesis and metabolism in rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	flavonoid	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Importantly, OsGA2ox8 was able to indirectly regulate several genes associated with the anthocyanin and flavonoid biosynthetic pathway and the jasmonic acid (JA) and abscisic acid (ABA) biosynthetic pathway, and overexpression of OsGA2ox8 activated JA signal transduction by inhibiting the expression of jasmonate ZIM domain-containing proteins
OsGA2ox8	Os05g0560900	LOC_Os05g48700	stress tolerance	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	stress tolerance	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The overexpression of OsGA2ox8 significantly enhanced the osmotic stress tolerance of transgenic rice plants by increasing the number of osmotic regulators and antioxidants
OsGA2ox8	Os05g0560900	LOC_Os05g48700	GA biosynthesis	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The plants overexpressing OsGA2ox8 showed reduced lengths of shoots and roots at the seedling stage, but no difference in plant height at the heading stage was observed, which may be due to the interaction of OsGA2ox8 and OsGA20ox1, implying a complex feedback regulation between GA biosynthesis and metabolism in rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	osmotic stress	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice
OsGA2ox8	Os05g0560900	LOC_Os05g48700	osmotic stress	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	The overexpression of OsGA2ox8 significantly enhanced the osmotic stress tolerance of transgenic rice plants by increasing the number of osmotic regulators and antioxidants
OsGA2ox8	Os05g0560900	LOC_Os05g48700	osmotic stress	Molecular Dissection of the Gene OsGA2ox8 Conferring Osmotic Stress Tolerance in Rice	OsGA2ox8 was differentially expressed in the shoots and roots to cope with osmotic stress
OsGA2ox9	Os02g0630300	LOC_Os02g41954	seed	Rice OsGA2ox9 regulates seed GA metabolism and dormancy	Rice OsGA2ox9 regulates seed GA metabolism and dormancy
OsGA2ox9	Os02g0630300	LOC_Os02g41954	ga	Rice OsGA2ox9 regulates seed GA metabolism and dormancy	Rice OsGA2ox9 regulates seed GA metabolism and dormancy
OsGA2ox9	Os02g0630300	LOC_Os02g41954	 ga 	Rice OsGA2ox9 regulates seed GA metabolism and dormancy	Rice OsGA2ox9 regulates seed GA metabolism and dormancy
OsGA2ox9	Os02g0630300	LOC_Os02g41954	GA	Rice OsGA2ox9 regulates seed GA metabolism and dormancy	Rice OsGA2ox9 regulates seed GA metabolism and dormancy
OsGA2ox9	Os02g0630300	LOC_Os02g41954	dormancy	Rice OsGA2ox9 regulates seed GA metabolism and dormancy	Rice OsGA2ox9 regulates seed GA metabolism and dormancy
OsGA3ox1	Os05g0178100	LOC_Os05g08540	gibberellin	Cloning and functional analysis of two gibberellin 3 beta -hydroxylase genes that are differently expressed during the growth of rice	We have cloned two gibberellin (GA) 3 beta-hydroxylase genes, OsGA3ox1 and OsGA3ox2, from rice by screening a genomic library with a DNA fragment obtained by PCR using degenerate primers
OsGA3ox1	Os05g0178100	LOC_Os05g08540	flower	Cloning and functional analysis of two gibberellin 3 beta -hydroxylase genes that are differently expressed during the growth of rice	Although both genes show transient expression, the highest level for OsGA3ox1 is from unopened flower
OsGA3ox1	Os05g0178100	LOC_Os05g08540	pollen	Evolutionary alterations in gene expression and enzymatic activities of gibberellin 3-oxidase 1 in Oryza.	 In addition, we generate an osga3ox1 knockout mutant by genome editing and demonstrate the bioactive gibberellic acid synthesis by the OsGA3ox1 action during starch accumulation in pollen via invertase regulation
OsGA3ox1	Os05g0178100	LOC_Os05g08540	starch	Evolutionary alterations in gene expression and enzymatic activities of gibberellin 3-oxidase 1 in Oryza.	 In addition, we generate an osga3ox1 knockout mutant by genome editing and demonstrate the bioactive gibberellic acid synthesis by the OsGA3ox1 action during starch accumulation in pollen via invertase regulation
OsGA3ox1	Os05g0178100	LOC_Os05g08540	starch accumulation	Evolutionary alterations in gene expression and enzymatic activities of gibberellin 3-oxidase 1 in Oryza.	 In addition, we generate an osga3ox1 knockout mutant by genome editing and demonstrate the bioactive gibberellic acid synthesis by the OsGA3ox1 action during starch accumulation in pollen via invertase regulation
OsGABA-T	Os02g0112900	LOC_Os02g02210	blast	Molecular cloning and differential expression of an gamma-aminobutyrate transaminase gene, OsGABA-T, in rice (Oryza sativa) leaves infected with blast fungus	OsGABA-T expression is induced by blast fungus infection, mechanical wounding and ultraviolet radiation in rice leaves and is not detected in normal rice organs
OsGABA-T	Os02g0112900	LOC_Os02g02210	blast	Molecular cloning and differential expression of an gamma-aminobutyrate transaminase gene, OsGABA-T, in rice (Oryza sativa) leaves infected with blast fungus	Molecular cloning and differential expression of an gamma-aminobutyrate transaminase gene, OsGABA-T, in rice (Oryza sativa) leaves infected with blast fungus
OsGABA-T	Os02g0112900	LOC_Os02g02210	cell death	Molecular cloning and differential expression of an gamma-aminobutyrate transaminase gene, OsGABA-T, in rice (Oryza sativa) leaves infected with blast fungus	Our data suggest that OsGABA-T (GABA shunt) may play a role in restricting the levels of cell death during the host-pathogen interaction
OsGAD1	Os08g0465800	LOC_Os08g36320	root	Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus	RNA analysis showed that transcripts of OsGAD1 and OsGAD2 were present in all tissues examined, but their expression was differentially regulated, at least in roots and maturing seeds
OsGAD1	Os08g0465800	LOC_Os08g36320	seed	Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus	RNA analysis showed that transcripts of OsGAD1 and OsGAD2 were present in all tissues examined, but their expression was differentially regulated, at least in roots and maturing seeds
OsGAD1	Os08g0465800	LOC_Os08g36320	shoot	Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus	We have isolated full-length cDNAs for two distinct isoforms of glutamate decarboxylase (GAD), designated OsGAD1 and OsGAD2 from a rice shoot cDNA library
OsGAD2	Os04g0447800	LOC_Os04g37500	root	Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus	RNA analysis showed that transcripts of OsGAD1 and OsGAD2 were present in all tissues examined, but their expression was differentially regulated, at least in roots and maturing seeds
OsGAD2	Os04g0447800	LOC_Os04g37500	shoot	Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus	We have isolated full-length cDNAs for two distinct isoforms of glutamate decarboxylase (GAD), designated OsGAD1 and OsGAD2 from a rice shoot cDNA library
OsGAD2	Os04g0447800	LOC_Os04g37500	dwarf	C-terminal extension of rice glutamate decarboxylase (OsGAD2) functions as an autoinhibitory domain and overexpression of a truncated mutant results in the accumulation of extremely high levels of GABA in plant cells	Regenerated OsGAD2DeltaC rice plants had aberrant phenotypes such as dwarfism, etiolated leaves, and sterility
OsGAD2	Os04g0447800	LOC_Os04g37500	grain	Seed-specific expression of truncated OsGAD2 produces GABA-enriched rice grains that influence a decrease in blood pressure in spontaneously hypertensive rats	Seed-specific expression of truncated OsGAD2 produces GABA-enriched rice grains that influence a decrease in blood pressure in spontaneously hypertensive rats
OsGAD2	Os04g0447800	LOC_Os04g37500	seed	Seed-specific expression of truncated OsGAD2 produces GABA-enriched rice grains that influence a decrease in blood pressure in spontaneously hypertensive rats	Seed-specific expression of truncated OsGAD2 produces GABA-enriched rice grains that influence a decrease in blood pressure in spontaneously hypertensive rats
OsGAD2	Os04g0447800	LOC_Os04g37500	seed	Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus	RNA analysis showed that transcripts of OsGAD1 and OsGAD2 were present in all tissues examined, but their expression was differentially regulated, at least in roots and maturing seeds
OsGAD2	Os04g0447800	LOC_Os04g37500	sterility	C-terminal extension of rice glutamate decarboxylase (OsGAD2) functions as an autoinhibitory domain and overexpression of a truncated mutant results in the accumulation of extremely high levels of GABA in plant cells	Regenerated OsGAD2DeltaC rice plants had aberrant phenotypes such as dwarfism, etiolated leaves, and sterility
OsGAE1	Os01g0201600	LOC_Os01g10490	meristem	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	In situ hybridization and OsGAE1 promoter analysis revealed that OsGAE1 expressed in shoot apex meristem and young primary leaves
OsGAE1	Os01g0201600	LOC_Os01g10490	root	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	OsGAE1 expressed mainly in growing leaf sheath and callus compared to leaf and root
OsGAE1	Os01g0201600	LOC_Os01g10490	reproductive	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	Transgenic rice expressing OsGAE1 in antisense orientation exhibited severely affected vegetative and reproductive growth
OsGAE1	Os01g0201600	LOC_Os01g10490	gibberellin	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth
OsGAE1	Os01g0201600	LOC_Os01g10490	vegetative	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	Transgenic rice expressing OsGAE1 in antisense orientation exhibited severely affected vegetative and reproductive growth
OsGAE1	Os01g0201600	LOC_Os01g10490	shoot	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	In situ hybridization and OsGAE1 promoter analysis revealed that OsGAE1 expressed in shoot apex meristem and young primary leaves
OsGAE1	Os01g0201600	LOC_Os01g10490	growth	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	Transgenic rice expressing OsGAE1 in antisense orientation exhibited severely affected vegetative and reproductive growth
OsGAE1	Os01g0201600	LOC_Os01g10490	growth	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	These results suggest that OsGAE1 is differentially expressed in rice leaf sheath in relation to GA(3) and it encodes a functional protein which is involved in GA-regulated growth and development of rice
OsGAE1	Os01g0201600	LOC_Os01g10490	growth	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth
OsGAE1	Os01g0201600	LOC_Os01g10490	leaf	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	Anti-OsGAE1 antibodies immunoreacted with a protein of 40 kDa in rice leaf sheath
OsGAE1	Os01g0201600	LOC_Os01g10490	leaf	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	OsGAE1 expressed mainly in growing leaf sheath and callus compared to leaf and root
OsGAE1	Os01g0201600	LOC_Os01g10490	leaf	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	These results suggest that OsGAE1 is differentially expressed in rice leaf sheath in relation to GA(3) and it encodes a functional protein which is involved in GA-regulated growth and development of rice
OsGAE1	Os01g0201600	LOC_Os01g10490	sheath	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	Anti-OsGAE1 antibodies immunoreacted with a protein of 40 kDa in rice leaf sheath
OsGAE1	Os01g0201600	LOC_Os01g10490	sheath	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	OsGAE1 expressed mainly in growing leaf sheath and callus compared to leaf and root
OsGAE1	Os01g0201600	LOC_Os01g10490	sheath	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth	These results suggest that OsGAE1 is differentially expressed in rice leaf sheath in relation to GA(3) and it encodes a functional protein which is involved in GA-regulated growth and development of rice
OsGAMYBL2	Os03g0578900	LOC_Os03g38210	ga	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	Furthermore, OsGSK2, a key negative player in BR signaling, interacts with OsGAMYBL2 and prevents it from being degraded under 24-epibrassinolide treatment, whereas SLR1, a rice DELLA protein negatively regulating GA signaling, interacts with OsGAMYBL2 and prevents OsGAMYBL2 from binding to the target gene promoter
OsGAMYBL2	Os03g0578900	LOC_Os03g38210	ga	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	GA signaling induces degradation of OsGAMYBL2 and, consequently, enhances BR signaling
OsGAMYBL2	Os03g0578900	LOC_Os03g38210	BR	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	Here, we show that BR suppresses the level of OsmiR159d, which cleaves the target OsGAMYBL2 gene
OsGAMYBL2	Os03g0578900	LOC_Os03g38210	BR	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	Furthermore, OsGSK2, a key negative player in BR signaling, interacts with OsGAMYBL2 and prevents it from being degraded under 24-epibrassinolide treatment, whereas SLR1, a rice DELLA protein negatively regulating GA signaling, interacts with OsGAMYBL2 and prevents OsGAMYBL2 from binding to the target gene promoter
OsGAMYBL2	Os03g0578900	LOC_Os03g38210	BR	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	GA signaling induces degradation of OsGAMYBL2 and, consequently, enhances BR signaling
OsGAMYBL2	Os03g0578900	LOC_Os03g38210	BR signaling	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	Furthermore, OsGSK2, a key negative player in BR signaling, interacts with OsGAMYBL2 and prevents it from being degraded under 24-epibrassinolide treatment, whereas SLR1, a rice DELLA protein negatively regulating GA signaling, interacts with OsGAMYBL2 and prevents OsGAMYBL2 from binding to the target gene promoter
OsGAMYBL2	Os03g0578900	LOC_Os03g38210	BR signaling	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	GA signaling induces degradation of OsGAMYBL2 and, consequently, enhances BR signaling
OsGAMYBL2	Os03g0578900	LOC_Os03g38210	GA	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	Furthermore, OsGSK2, a key negative player in BR signaling, interacts with OsGAMYBL2 and prevents it from being degraded under 24-epibrassinolide treatment, whereas SLR1, a rice DELLA protein negatively regulating GA signaling, interacts with OsGAMYBL2 and prevents OsGAMYBL2 from binding to the target gene promoter
OsGAMYBL2	Os03g0578900	LOC_Os03g38210	GA	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	GA signaling induces degradation of OsGAMYBL2 and, consequently, enhances BR signaling
OsGAP	Os07g0500300	LOC_Os07g31720	seed	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	PHS9 or OsGAP overexpression plants showed reduced, while PHS9 or OsGAP knockout mutant plants showed increased ABA sensitivity in seed germination, suggesting that PHS9 and OsGAP acted as negative regulators in ABA signaling during seed germination
OsGAP	Os07g0500300	LOC_Os07g31720	seed	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	Interestingly, the germination of PHS9 and OsGAP overexpression or knockout plant seeds was weakly promoted by H2 O2 , implying that PHS9 and OsGAP could affect the ROS signaling during seed germination
OsGAP	Os07g0500300	LOC_Os07g31720	seed germination	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	PHS9 or OsGAP overexpression plants showed reduced, while PHS9 or OsGAP knockout mutant plants showed increased ABA sensitivity in seed germination, suggesting that PHS9 and OsGAP acted as negative regulators in ABA signaling during seed germination
OsGAP	Os07g0500300	LOC_Os07g31720	seed germination	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	Interestingly, the germination of PHS9 and OsGAP overexpression or knockout plant seeds was weakly promoted by H2 O2 , implying that PHS9 and OsGAP could affect the ROS signaling during seed germination
OsGAP	Os07g0500300	LOC_Os07g31720	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	PHS9 or OsGAP overexpression plants showed reduced, while PHS9 or OsGAP knockout mutant plants showed increased ABA sensitivity in seed germination, suggesting that PHS9 and OsGAP acted as negative regulators in ABA signaling during seed germination
OsGAP	Os07g0500300	LOC_Os07g31720	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	PHS9 or OsGAP overexpression plants showed reduced, while PHS9 or OsGAP knockout mutant plants showed increased ABA sensitivity in seed germination, suggesting that PHS9 and OsGAP acted as negative regulators in ABA signaling during seed germination
OsGAP1	Os02g0327000	LOC_Os02g22130	photosynthesis	Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence	We isolated 24 sequences which have putative functions in distinct cellular processes, such as transcription regulation (OsWRKY80), stress response (OsGAP1, DEAD-BOX RNA helicase), proteolysis (oryzain-alpha, rhomboid protein), photosynthesis (chlorophyll a/b binding protein), sugar metabolism (beta glucosidase) and electron transport (NADH ubiquinone oxireductase)
OsGAP1	Os02g0327000	LOC_Os02g22130	defense	An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein	The finding that OsYchF1 and OsGAP1 are involved in plant defense response might shed light on the functional roles of YchF homologues in plants
OsGAP1	Os02g0327000	LOC_Os02g22130	defense response	Constitutive expression of a rice GTPase-activating protein induces defense responses	G-proteins (guanine nucleotide-binding proteins that usually exhibit GTPase activities) and related signal transduction processes play important roles in mediating plant defense responses; here, a rice (Oryza sativa) cDNA clone, OsGAP1, encoding a GTPase-activating protein (GAP) that also contains a protein kinase C conserved region 2 (C2) domain is reported
OsGAP1	Os02g0327000	LOC_Os02g22130	defense response	An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein	The finding that OsYchF1 and OsGAP1 are involved in plant defense response might shed light on the functional roles of YchF homologues in plants
OsGAP1	Os02g0327000	LOC_Os02g22130	defense	Constitutive expression of a rice GTPase-activating protein induces defense responses	G-proteins (guanine nucleotide-binding proteins that usually exhibit GTPase activities) and related signal transduction processes play important roles in mediating plant defense responses; here, a rice (Oryza sativa) cDNA clone, OsGAP1, encoding a GTPase-activating protein (GAP) that also contains a protein kinase C conserved region 2 (C2) domain is reported
OsGAP1	Os02g0327000	LOC_Os02g22130	salt	Site-Directed Mutagenesis Shows the Significance of Interactions with Phospholipids and the G-protein OsYchF1 on the Physiological Functions of the Rice GTPase-Activating Protein 1 (OsGAP1).	On the other hand, the ability to alleviate salt stress by OsGAP1 is dependent only on its ability to bind OsYchF1 and is independent of its phospholipid-binding activity
OsGAP1	Os02g0327000	LOC_Os02g22130	salt stress	Site-Directed Mutagenesis Shows the Significance of Interactions with Phospholipids and the G-protein OsYchF1 on the Physiological Functions of the Rice GTPase-Activating Protein 1 (OsGAP1).	On the other hand, the ability to alleviate salt stress by OsGAP1 is dependent only on its ability to bind OsYchF1 and is independent of its phospholipid-binding activity
OsGAP1	Os02g0327000	LOC_Os02g22130	stress	Site-Directed Mutagenesis Shows the Significance of Interactions with Phospholipids and the G-protein OsYchF1 on the Physiological Functions of the Rice GTPase-Activating Protein 1 (OsGAP1).	On the other hand, the ability to alleviate salt stress by OsGAP1 is dependent only on its ability to bind OsYchF1 and is independent of its phospholipid-binding activity
OsGapC2	Os04g0486600	LOC_Os04g40950	drought stress	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	In Oryza sativa, OsGAPC2 responds to drought stress, salt stress, heat stress and ABA.
OsGapC2	Os04g0486600	LOC_Os04g40950	stress	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	In Oryza sativa, OsGAPC2 responds to drought stress, salt stress, heat stress and ABA.
OsGapC2	Os04g0486600	LOC_Os04g40950	salt stress	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	In Oryza sativa, OsGAPC2 responds to drought stress, salt stress, heat stress and ABA.
OsGapC2	Os04g0486600	LOC_Os04g40950	heat stress	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	In Oryza sativa, OsGAPC2 responds to drought stress, salt stress, heat stress and ABA.
OsGAPC3	Os08g0126300	LOC_Os08g03290	salt	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice
OsGAPC3	Os08g0126300	LOC_Os08g03290	salt	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Transgenic rice plants overexpressing OsGAPC3 showed enhanced tolerance to salt stress
OsGAPC3	Os08g0126300	LOC_Os08g03290	salt	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Furthermore, we found that OsGAPC3 could alleviate the salt toxicity through the regulation of hydrogen peroxide (H2O2) levels
OsGAPC3	Os08g0126300	LOC_Os08g03290	salt	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Taken together, these results indicate that OsGAPC3 plays important roles in salt stress tolerance in rice
OsGAPC3	Os08g0126300	LOC_Os08g03290	tolerance	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice
OsGAPC3	Os08g0126300	LOC_Os08g03290	tolerance	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Transgenic rice plants overexpressing OsGAPC3 showed enhanced tolerance to salt stress
OsGAPC3	Os08g0126300	LOC_Os08g03290	tolerance	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Taken together, these results indicate that OsGAPC3 plays important roles in salt stress tolerance in rice
OsGAPC3	Os08g0126300	LOC_Os08g03290	salt tolerance	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice
OsGAPC3	Os08g0126300	LOC_Os08g03290	salt stress	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Transgenic rice plants overexpressing OsGAPC3 showed enhanced tolerance to salt stress
OsGAPC3	Os08g0126300	LOC_Os08g03290	salt stress	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Taken together, these results indicate that OsGAPC3 plays important roles in salt stress tolerance in rice
OsGAPC3	Os08g0126300	LOC_Os08g03290	stress	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Transgenic rice plants overexpressing OsGAPC3 showed enhanced tolerance to salt stress
OsGAPC3	Os08g0126300	LOC_Os08g03290	stress	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Taken together, these results indicate that OsGAPC3 plays important roles in salt stress tolerance in rice
OsGAPC3	Os08g0126300	LOC_Os08g03290	stress tolerance	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Taken together, these results indicate that OsGAPC3 plays important roles in salt stress tolerance in rice
OsGAPDH	Os08g0440800	LOC_Os08g34210	ABA	Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.)	Plants exposed to drought, submergence and ABA treatment showed an increased accumulation of OsGAPDH transcripts
OsGAPDH	Os08g0440800	LOC_Os08g34210	panicle	Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.)	Tissue-specific expression of OsGAPDH indicated that the high level of mRNA was detected in the panicle
OsGAPDH	Os08g0440800	LOC_Os08g34210	drought	Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.)	Plants exposed to drought, submergence and ABA treatment showed an increased accumulation of OsGAPDH transcripts
OsGAPDH	Os08g0440800	LOC_Os08g34210	phosphate	Crystal structures of rice (Oryza sativa) glyceraldehyde-3-phosphate dehydrogenase complexes with NAD and sulfate suggest involvement of Phe37 in NAD binding for catalysis	Cytosolic Oryza sativa glyceraldehyde-3-phosphate dehydrogenase (OsGAPDH), the enzyme involved in the ubiquitous glycolysis, catalyzes the oxidative phosphorylation of glyceraldehyde-3-phosphate to 1,3-biphosphoglycerate (BPG) using nicotinamide adenine dinucleotide (NAD) as an electron acceptor
OsGAPDH	Os08g0440800	LOC_Os08g34210	phosphate	Crystal structures of rice (Oryza sativa) glyceraldehyde-3-phosphate dehydrogenase complexes with NAD and sulfate suggest involvement of Phe37 in NAD binding for catalysis	NAD binds to each OsGAPDH subunits with some residues forming positively charged grooves that attract sulfate anions, as a simulation of phosphate groups in the product BPG
OsGAPDH	Os08g0440800	LOC_Os08g34210	submergence	Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.)	One of the clones, OsGAPDH, represented a gene that was expressed at high level during 12-h submergence
OsGAPDH	Os08g0440800	LOC_Os08g34210	submergence	Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.)	Plants exposed to drought, submergence and ABA treatment showed an increased accumulation of OsGAPDH transcripts
OsGAPDH	Os08g0440800	LOC_Os08g34210	submergence	Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.)	Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.)
OsGAPDH	Os08g0440800	LOC_Os08g34210	oxidative	Crystal structures of rice (Oryza sativa) glyceraldehyde-3-phosphate dehydrogenase complexes with NAD and sulfate suggest involvement of Phe37 in NAD binding for catalysis	Cytosolic Oryza sativa glyceraldehyde-3-phosphate dehydrogenase (OsGAPDH), the enzyme involved in the ubiquitous glycolysis, catalyzes the oxidative phosphorylation of glyceraldehyde-3-phosphate to 1,3-biphosphoglycerate (BPG) using nicotinamide adenine dinucleotide (NAD) as an electron acceptor
OsGASD	Os04g0512300	LOC_Os04g43290	growth	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 The osgasd knockout (Ko) mutation reduced GA3 content in shoots as well as plant growth and height
OsGASD	Os04g0512300	LOC_Os04g43290	growth	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 These observations suggest that OsGASD is involved in maintaining GA homeostasis to regulate plant development, thereby affecting rice growth and productivity
OsGASD	Os04g0512300	LOC_Os04g43290	development	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 Transcriptome analysis of flag leaves of OsGASD Ox and osgasd Ko plants revealed that OsGASD regulates cell development and the expression of elongation-related genes
OsGASD	Os04g0512300	LOC_Os04g43290	grain	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 Rice plants overexpressing OsGASD (Ox) showed increased plant height and grain yield compared to the WT
OsGASD	Os04g0512300	LOC_Os04g43290	plant development	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 These observations suggest that OsGASD is involved in maintaining GA homeostasis to regulate plant development, thereby affecting rice growth and productivity
OsGASD	Os04g0512300	LOC_Os04g43290	grain yield	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 Rice plants overexpressing OsGASD (Ox) showed increased plant height and grain yield compared to the WT
OsGASD	Os04g0512300	LOC_Os04g43290	yield	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 Rice plants overexpressing OsGASD (Ox) showed increased plant height and grain yield compared to the WT
OsGASD	Os04g0512300	LOC_Os04g43290	homeostasis	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 These observations suggest that OsGASD is involved in maintaining GA homeostasis to regulate plant development, thereby affecting rice growth and productivity
OsGASD	Os04g0512300	LOC_Os04g43290	plant growth	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 The osgasd knockout (Ko) mutation reduced GA3 content in shoots as well as plant growth and height
OsGASD	Os04g0512300	LOC_Os04g43290	ga	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 However, GA application restored the plant height of the osgasd Ko mutant to a height similar to that of the wild type (WT)
OsGASD	Os04g0512300	LOC_Os04g43290	ga	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 These observations suggest that OsGASD is involved in maintaining GA homeostasis to regulate plant development, thereby affecting rice growth and productivity
OsGASD	Os04g0512300	LOC_Os04g43290	 ga 	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 However, GA application restored the plant height of the osgasd Ko mutant to a height similar to that of the wild type (WT)
OsGASD	Os04g0512300	LOC_Os04g43290	 ga 	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 These observations suggest that OsGASD is involved in maintaining GA homeostasis to regulate plant development, thereby affecting rice growth and productivity
OsGASD	Os04g0512300	LOC_Os04g43290	height	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 The osgasd knockout (Ko) mutation reduced GA3 content in shoots as well as plant growth and height
OsGASD	Os04g0512300	LOC_Os04g43290	height	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 However, GA application restored the plant height of the osgasd Ko mutant to a height similar to that of the wild type (WT)
OsGASD	Os04g0512300	LOC_Os04g43290	height	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 Rice plants overexpressing OsGASD (Ox) showed increased plant height and grain yield compared to the WT
OsGASD	Os04g0512300	LOC_Os04g43290	plant height	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 However, GA application restored the plant height of the osgasd Ko mutant to a height similar to that of the wild type (WT)
OsGASD	Os04g0512300	LOC_Os04g43290	plant height	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 Rice plants overexpressing OsGASD (Ox) showed increased plant height and grain yield compared to the WT
OsGASD	Os04g0512300	LOC_Os04g43290	GA	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 However, GA application restored the plant height of the osgasd Ko mutant to a height similar to that of the wild type (WT)
OsGASD	Os04g0512300	LOC_Os04g43290	GA	Gibberellic acid sensitive dwarf encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	 These observations suggest that OsGASD is involved in maintaining GA homeostasis to regulate plant development, thereby affecting rice growth and productivity
OsGASR1	Os03g0760800	LOC_Os03g55290	panicle	Two OsGASR genes, rice GAST homologue genes that are abundant in proliferating tissues, show different expression patterns in developing panicles	These results suggest that OsGASR1 and OsGASR2 were involved in cell division and might play diverse roles in differentation of panicles
OsGASR1	Os03g0760800	LOC_Os03g55290	cell division	Two OsGASR genes, rice GAST homologue genes that are abundant in proliferating tissues, show different expression patterns in developing panicles	These results suggest that OsGASR1 and OsGASR2 were involved in cell division and might play diverse roles in differentation of panicles
OsGASR1	Os03g0760800	LOC_Os03g55290	leaf	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and α-amylase expression in rice.	In the osgasr1 mutants, the second leaf blades were much longer than those of the segregating wild type due to an increase in cell length
OsGASR1	Os03g0760800	LOC_Os03g55290	growth	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and α-amylase expression in rice.	These results suggest that OsGASR1 plays important roles in seedling growth and α-amylase gene expression
OsGASR1	Os03g0760800	LOC_Os03g55290	seedling	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and α-amylase expression in rice.	These results suggest that OsGASR1 plays important roles in seedling growth and α-amylase gene expression
OsGASR1	Os03g0760800	LOC_Os03g55290	salt	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and α-amylase expression in rice.	From a T-DNA-tagging population in rice, we identified OsGASR1 (LOC_Os03g55290), a member of the GAST (gibberellin (GA)-Stimulated Transcript) family that is induced by salt stress and ABA treatment
OsGASR1	Os03g0760800	LOC_Os03g55290	ABA	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and α-amylase expression in rice.	From a T-DNA-tagging population in rice, we identified OsGASR1 (LOC_Os03g55290), a member of the GAST (gibberellin (GA)-Stimulated Transcript) family that is induced by salt stress and ABA treatment
OsGASR1	Os03g0760800	LOC_Os03g55290	salt stress	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and α-amylase expression in rice.	From a T-DNA-tagging population in rice, we identified OsGASR1 (LOC_Os03g55290), a member of the GAST (gibberellin (GA)-Stimulated Transcript) family that is induced by salt stress and ABA treatment
OsGASR1	Os03g0760800	LOC_Os03g55290	stress	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and α-amylase expression in rice.	From a T-DNA-tagging population in rice, we identified OsGASR1 (LOC_Os03g55290), a member of the GAST (gibberellin (GA)-Stimulated Transcript) family that is induced by salt stress and ABA treatment
OsGASR1	Os03g0760800	LOC_Os03g55290	ABA	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and α-amylase expression in rice.	From a T-DNA-tagging population in rice, we identified OsGASR1 (LOC_Os03g55290), a member of the GAST (gibberellin (GA)-Stimulated Transcript) family that is induced by salt stress and ABA treatment
OsGASR2	Os04g0465300	LOC_Os04g39110	cell division	Two OsGASR genes, rice GAST homologue genes that are abundant in proliferating tissues, show different expression patterns in developing panicles	These results suggest that OsGASR1 and OsGASR2 were involved in cell division and might play diverse roles in differentation of panicles
OsGASR2	Os04g0465300	LOC_Os04g39110	panicle	Two OsGASR genes, rice GAST homologue genes that are abundant in proliferating tissues, show different expression patterns in developing panicles	These results suggest that OsGASR1 and OsGASR2 were involved in cell division and might play diverse roles in differentation of panicles
OsGASR9	Os07g0592000	LOC_Os07g40240	leaf	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Furthermore, by measuring the GA-induced lengths of the second leaf sheaths and α-amylase activity levels of seeds, we concluded that OsGASR9 is a positive regulator of responses to GA in rice
OsGASR9	Os07g0592000	LOC_Os07g40240	grain	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).
OsGASR9	Os07g0592000	LOC_Os07g40240	grain	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Conversely, the overexpression of OsGASR9 in the two backgrounds increased plant height and grain size
OsGASR9	Os07g0592000	LOC_Os07g40240	grain	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Thus, OsGASR9 may regulate plant height, grain size and yield through the GA pathway and could have an application value in breeding
OsGASR9	Os07g0592000	LOC_Os07g40240	yield	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).
OsGASR9	Os07g0592000	LOC_Os07g40240	yield	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Thus, OsGASR9 may regulate plant height, grain size and yield through the GA pathway and could have an application value in breeding
OsGASR9	Os07g0592000	LOC_Os07g40240	grain size	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).
OsGASR9	Os07g0592000	LOC_Os07g40240	grain size	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Conversely, the overexpression of OsGASR9 in the two backgrounds increased plant height and grain size
OsGASR9	Os07g0592000	LOC_Os07g40240	grain size	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Thus, OsGASR9 may regulate plant height, grain size and yield through the GA pathway and could have an application value in breeding
OsGASR9	Os07g0592000	LOC_Os07g40240	cytoplasm	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	OsGASR9 localized to the plasma membrane, cytoplasm and nucleus
OsGASR9	Os07g0592000	LOC_Os07g40240	nucleus	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	OsGASR9 localized to the plasma membrane, cytoplasm and nucleus
OsGASR9	Os07g0592000	LOC_Os07g40240	ga	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Furthermore, by measuring the GA-induced lengths of the second leaf sheaths and α-amylase activity levels of seeds, we concluded that OsGASR9 is a positive regulator of responses to GA in rice
OsGASR9	Os07g0592000	LOC_Os07g40240	ga	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Thus, OsGASR9 may regulate plant height, grain size and yield through the GA pathway and could have an application value in breeding
OsGASR9	Os07g0592000	LOC_Os07g40240	breeding	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Thus, OsGASR9 may regulate plant height, grain size and yield through the GA pathway and could have an application value in breeding
OsGASR9	Os07g0592000	LOC_Os07g40240	height	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Conversely, the overexpression of OsGASR9 in the two backgrounds increased plant height and grain size
OsGASR9	Os07g0592000	LOC_Os07g40240	plant height	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Conversely, the overexpression of OsGASR9 in the two backgrounds increased plant height and grain size
OsGASR9	Os07g0592000	LOC_Os07g40240	plant height	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Thus, OsGASR9 may regulate plant height, grain size and yield through the GA pathway and could have an application value in breeding
OsGASR9	Os07g0592000	LOC_Os07g40240	GA	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Furthermore, by measuring the GA-induced lengths of the second leaf sheaths and α-amylase activity levels of seeds, we concluded that OsGASR9 is a positive regulator of responses to GA in rice
OsGASR9	Os07g0592000	LOC_Os07g40240	GA	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	Thus, OsGASR9 may regulate plant height, grain size and yield through the GA pathway and could have an application value in breeding
OsGASR9	Os07g0592000	LOC_Os07g40240	plasma membrane	OsGASR9 positively regulates grain size and yield in rice (Oryza sativa).	OsGASR9 localized to the plasma membrane, cytoplasm and nucleus
OsGATA10	Os03g0145200	LOC_Os03g05160	fertility	The transcription factor GATA10 regulates fertility conversion of a two-line hybrid tms5 mutant rice via the modulation of UbL40 expression.	Osgata10 knockout mutations, which resulted in low expression of UbL40 and a tendency toward male fertility, confirmed that GATA10 regulated fertility conversion via the modulation of UbL40
OsGATA12	Os03g0831200	LOC_Os03g61570	senescence	Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.	Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.
OsGATA12	Os03g0831200	LOC_Os03g61570	yield	Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.	Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.
OsGATA16	Os06g0571800	LOC_Os06g37450	transcription factor	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Conclusion: OsGATA16 is a GATA transcription factor, which improves cold tolerance at seedling stage in rice
OsGATA16	Os06g0571800	LOC_Os06g37450	seedling	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Overexpression of OsGATA16 improves cold tolerance of rice at seedling stage
OsGATA16	Os06g0571800	LOC_Os06g37450	seedling	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Conclusion: OsGATA16 is a GATA transcription factor, which improves cold tolerance at seedling stage in rice
OsGATA16	Os06g0571800	LOC_Os06g37450	tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Overexpression of OsGATA16 improves cold tolerance of rice at seedling stage
OsGATA16	Os06g0571800	LOC_Os06g37450	tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	In addition, haplotype analysis showed that OsGATA16 polarized between the two major rice subspecies japonica and indica, and had a non-synonymous SNP8 (336G) associated with cold tolerance
OsGATA16	Os06g0571800	LOC_Os06g37450	tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Conclusion: OsGATA16 is a GATA transcription factor, which improves cold tolerance at seedling stage in rice
OsGATA16	Os06g0571800	LOC_Os06g37450	tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Additionally, OsGATA16 has a non-synonymous SNP8 (336G) associated with cold tolerance on CDS region
OsGATA16	Os06g0571800	LOC_Os06g37450	cold tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Overexpression of OsGATA16 improves cold tolerance of rice at seedling stage
OsGATA16	Os06g0571800	LOC_Os06g37450	cold tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	In addition, haplotype analysis showed that OsGATA16 polarized between the two major rice subspecies japonica and indica, and had a non-synonymous SNP8 (336G) associated with cold tolerance
OsGATA16	Os06g0571800	LOC_Os06g37450	cold tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Conclusion: OsGATA16 is a GATA transcription factor, which improves cold tolerance at seedling stage in rice
OsGATA16	Os06g0571800	LOC_Os06g37450	cold tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Additionally, OsGATA16 has a non-synonymous SNP8 (336G) associated with cold tolerance on CDS region
OsGATA16	Os06g0571800	LOC_Os06g37450	cold	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Overexpression of OsGATA16 improves cold tolerance of rice at seedling stage
OsGATA16	Os06g0571800	LOC_Os06g37450	cold	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	In addition, haplotype analysis showed that OsGATA16 polarized between the two major rice subspecies japonica and indica, and had a non-synonymous SNP8 (336G) associated with cold tolerance
OsGATA16	Os06g0571800	LOC_Os06g37450	cold	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Conclusion: OsGATA16 is a GATA transcription factor, which improves cold tolerance at seedling stage in rice
OsGATA16	Os06g0571800	LOC_Os06g37450	cold	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Additionally, OsGATA16 has a non-synonymous SNP8 (336G) associated with cold tolerance on CDS region
OsGATA28	Os11g0187200	LOC_Os11g08410	plant height	Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.	Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.
OsGATA28	Os11g0187200	LOC_Os11g08410	heading date	Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.	Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.
OsGATA28	Os11g0187200	LOC_Os11g08410	panicle length	Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.	Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.
OsGATA6	Os01g0745700	LOC_Os01g54210	transcription factor	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.
OsGATA6	Os01g0745700	LOC_Os01g54210	development	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Further analyses showed that OsGATA6 could bind to the promoter of OsMFT1 and induce its expression, thereby regulating heading date and panicle development
OsGATA6	Os01g0745700	LOC_Os01g54210	grain	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.
OsGATA6	Os01g0745700	LOC_Os01g54210	grain	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Overexpression of OsGATA6 resulted in delayed heading, increased grain number, and decreased grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	grain	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Knockdown lines generated by artificial microRNA (amiRNA) and CRISPR genome-edited lines of OsGATA6 both showed earlier heading, decreased grain number, and increased grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	grain	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 These results suggested that OsGATA6 negatively regulates heading date, positively regulates panicle development, and affects grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	grain size	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Overexpression of OsGATA6 resulted in delayed heading, increased grain number, and decreased grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	grain size	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Knockdown lines generated by artificial microRNA (amiRNA) and CRISPR genome-edited lines of OsGATA6 both showed earlier heading, decreased grain number, and increased grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	grain size	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 These results suggested that OsGATA6 negatively regulates heading date, positively regulates panicle development, and affects grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	panicle	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 These results suggested that OsGATA6 negatively regulates heading date, positively regulates panicle development, and affects grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	panicle	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 In situ hybridization analyses showed that OsGATA6 was specifically localized in superficial cells of the panicle primordium
OsGATA6	Os01g0745700	LOC_Os01g54210	panicle	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Further analyses showed that OsGATA6 could bind to the promoter of OsMFT1 and induce its expression, thereby regulating heading date and panicle development
OsGATA6	Os01g0745700	LOC_Os01g54210	grain number	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.
OsGATA6	Os01g0745700	LOC_Os01g54210	grain number	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Overexpression of OsGATA6 resulted in delayed heading, increased grain number, and decreased grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	grain number	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Knockdown lines generated by artificial microRNA (amiRNA) and CRISPR genome-edited lines of OsGATA6 both showed earlier heading, decreased grain number, and increased grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	heading date	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.
OsGATA6	Os01g0745700	LOC_Os01g54210	heading date	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 These results suggested that OsGATA6 negatively regulates heading date, positively regulates panicle development, and affects grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	heading date	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Further analyses showed that OsGATA6 could bind to the promoter of OsMFT1 and induce its expression, thereby regulating heading date and panicle development
OsGATA6	Os01g0745700	LOC_Os01g54210	panicle development	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 These results suggested that OsGATA6 negatively regulates heading date, positively regulates panicle development, and affects grain size
OsGATA6	Os01g0745700	LOC_Os01g54210	panicle development	The transcription factor OsGATA6 regulates rice heading date and grain number per panicle.	 Further analyses showed that OsGATA6 could bind to the promoter of OsMFT1 and induce its expression, thereby regulating heading date and panicle development
OsGATA8	Os01g0343300	LOC_Os01g24070	transcription factor	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.
OsGATA8	Os01g0343300	LOC_Os01g24070	development	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.
OsGATA8	Os01g0343300	LOC_Os01g24070	seed	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.
OsGATA8	Os01g0343300	LOC_Os01g24070	seed	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	Using genetic, molecular, and physiological analyses, in this study we show that OsGATA8 increases seed size and tolerance to abiotic stresses in both Arabidopsis and rice
OsGATA8	Os01g0343300	LOC_Os01g24070	tolerance	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.
OsGATA8	Os01g0343300	LOC_Os01g24070	tolerance	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	Using genetic, molecular, and physiological analyses, in this study we show that OsGATA8 increases seed size and tolerance to abiotic stresses in both Arabidopsis and rice
OsGATA8	Os01g0343300	LOC_Os01g24070	abiotic stress	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	Using genetic, molecular, and physiological analyses, in this study we show that OsGATA8 increases seed size and tolerance to abiotic stresses in both Arabidopsis and rice
OsGATA8	Os01g0343300	LOC_Os01g24070	stress	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.
OsGATA8	Os01g0343300	LOC_Os01g24070	stress	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	OsGATA8 produced these effects by regulating the expression of critical genes involved in stress tolerance, scavenging of reactive oxygen species, and chlorophyll biosynthesis
OsGATA8	Os01g0343300	LOC_Os01g24070	biotic stress	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	Using genetic, molecular, and physiological analyses, in this study we show that OsGATA8 increases seed size and tolerance to abiotic stresses in both Arabidopsis and rice
OsGATA8	Os01g0343300	LOC_Os01g24070	seed size	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	Using genetic, molecular, and physiological analyses, in this study we show that OsGATA8 increases seed size and tolerance to abiotic stresses in both Arabidopsis and rice
OsGATA8	Os01g0343300	LOC_Os01g24070	seed development	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.
OsGATA8	Os01g0343300	LOC_Os01g24070	reactive oxygen species	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	OsGATA8 produced these effects by regulating the expression of critical genes involved in stress tolerance, scavenging of reactive oxygen species, and chlorophyll biosynthesis
OsGATA8	Os01g0343300	LOC_Os01g24070	stress tolerance	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.
OsGATA8	Os01g0343300	LOC_Os01g24070	stress tolerance	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in  stress tolerance and seed development in Arabidopsis and rice.	OsGATA8 produced these effects by regulating the expression of critical genes involved in stress tolerance, scavenging of reactive oxygen species, and chlorophyll biosynthesis
OsGatB	Os11g0544800	LOC_Os11g34210	root	OsGatB, the Subunit of tRNA-Dependent Amidotransferase, Is Required for Primary Root Development in Rice.	In the root, OsGatB was predominantly expressed in the root tip and played an important role in cell division and elongation there
OsGatB	Os11g0544800	LOC_Os11g34210	root	OsGatB, the Subunit of tRNA-Dependent Amidotransferase, Is Required for Primary Root Development in Rice.	OsGatB was localized in the mitochondria, and mitochondrial structure and function were all affected in Osgatb root tip cells
OsGatB	Os11g0544800	LOC_Os11g34210	cell division	OsGatB, the Subunit of tRNA-Dependent Amidotransferase, Is Required for Primary Root Development in Rice.	In the root, OsGatB was predominantly expressed in the root tip and played an important role in cell division and elongation there
OsGATL5	Os04g0530900	LOC_Os04g44850	salt	Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in Oryza sativa ssp. japonica.	We found that OsGolS1 was significantly up-regulated under salt stress, while OsGAUT21, OsGATL2, and OsGATL5 had remarkable up-regulation under cold stress
OsGATL5	Os04g0530900	LOC_Os04g44850	cold stress	Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in Oryza sativa ssp. japonica.	We found that OsGolS1 was significantly up-regulated under salt stress, while OsGAUT21, OsGATL2, and OsGATL5 had remarkable up-regulation under cold stress
OsGATL5	Os04g0530900	LOC_Os04g44850	salt stress	Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in Oryza sativa ssp. japonica.	We found that OsGolS1 was significantly up-regulated under salt stress, while OsGAUT21, OsGATL2, and OsGATL5 had remarkable up-regulation under cold stress
OsGATL5	Os04g0530900	LOC_Os04g44850	stress	Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in Oryza sativa ssp. japonica.	We found that OsGolS1 was significantly up-regulated under salt stress, while OsGAUT21, OsGATL2, and OsGATL5 had remarkable up-regulation under cold stress
OsGATL5	Os04g0530900	LOC_Os04g44850	cold	Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in Oryza sativa ssp. japonica.	We found that OsGolS1 was significantly up-regulated under salt stress, while OsGAUT21, OsGATL2, and OsGATL5 had remarkable up-regulation under cold stress
OsGBF1	None	None	salinity	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.
OsGBF1	None	None	salt	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.	In this study, we analyzed the expression of OsGBF1 during salt stress in two contrasting Oryza sativa spp
OsGBF1	None	None	tolerance	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.	This is the first report on OsGBF1 splice variant and the variant could have specific functions linked to stress tolerance in rice
OsGBF1	None	None	salt stress	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.	In this study, we analyzed the expression of OsGBF1 during salt stress in two contrasting Oryza sativa spp
OsGBF1	None	None	stress	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.	In this study, we analyzed the expression of OsGBF1 during salt stress in two contrasting Oryza sativa spp
OsGBF1	None	None	stress	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.	This is the first report on OsGBF1 splice variant and the variant could have specific functions linked to stress tolerance in rice
OsGBF1	None	None	salinity stress	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.
OsGBF1	None	None	stress tolerance	Identification of splice variant of OsGBF1 in Oryza sativa ssp. indica genotypes under salinity stress.	This is the first report on OsGBF1 splice variant and the variant could have specific functions linked to stress tolerance in rice
OsGBP	Os02g0135900	LOC_Os02g04330	leaf	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	In the osgbp mutant, the extent of GBSSI and GBSSII binding to starch in the leaf and endosperm was significantly lower than wild type
OsGBP	Os02g0135900	LOC_Os02g04330	leaf	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	Our data suggest that OsGBP plays an important role in leaf and endosperm starch biosynthesis by mediating the binding of GBSS proteins to developing starch granules
OsGBP	Os02g0135900	LOC_Os02g04330	grain	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	The total starch and amylose contents in osgbp mutants were significantly lower than those of wild type in leaves and grains, resulting in reduced grain weight and quality
OsGBP	Os02g0135900	LOC_Os02g04330	grain	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	The total starch and amylose contents in osgbp mutants were significantly lower than those of wild type in leaves and grains, resulting in reduced grain weight and quality
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	The carbohydrate-binding module 48 (CBM48) domain present in the C-terminus of OsGBP is crucial for OsGBP binding to starch
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	In the osgbp mutant, the extent of GBSSI and GBSSII binding to starch in the leaf and endosperm was significantly lower than wild type
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	Our data suggest that OsGBP plays an important role in leaf and endosperm starch biosynthesis by mediating the binding of GBSS proteins to developing starch granules
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	yield	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	endosperm	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	In the osgbp mutant, the extent of GBSSI and GBSSII binding to starch in the leaf and endosperm was significantly lower than wild type
OsGBP	Os02g0135900	LOC_Os02g04330	endosperm	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	Our data suggest that OsGBP plays an important role in leaf and endosperm starch biosynthesis by mediating the binding of GBSS proteins to developing starch granules
OsGBP	Os02g0135900	LOC_Os02g04330	grain weight	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	The total starch and amylose contents in osgbp mutants were significantly lower than those of wild type in leaves and grains, resulting in reduced grain weight and quality
OsGBP	Os02g0135900	LOC_Os02g04330	quality	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	The total starch and amylose contents in osgbp mutants were significantly lower than those of wild type in leaves and grains, resulting in reduced grain weight and quality
OsGBP	Os02g0135900	LOC_Os02g04330	quality	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	starch biosynthesis	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	Our data suggest that OsGBP plays an important role in leaf and endosperm starch biosynthesis by mediating the binding of GBSS proteins to developing starch granules
OsGBP	Os02g0135900	LOC_Os02g04330	starch biosynthesis	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	grain quality	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield.	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	leaf	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	In the osgbp mutant, the extent of GBSSI and GBSSII binding to starch in the leaf and endosperm was significantly lower than wild type
OsGBP	Os02g0135900	LOC_Os02g04330	leaf	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	Our data suggest that OsGBP plays an important role in leaf and endosperm starch biosynthesis by mediating the binding of GBSS proteins to developing starch granules
OsGBP	Os02g0135900	LOC_Os02g04330	grain	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	The total starch and amylose contents in osgbp mutants were significantly lower than those of wild type in leaves and grains, resulting in reduced grain weight and quality
OsGBP	Os02g0135900	LOC_Os02g04330	grain	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	The total starch and amylose contents in osgbp mutants were significantly lower than those of wild type in leaves and grains, resulting in reduced grain weight and quality
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	The carbohydrate-binding module 48 (CBM48) domain present in the C-terminus of OsGBP is crucial for OsGBP binding to starch
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	In the osgbp mutant, the extent of GBSSI and GBSSII binding to starch in the leaf and endosperm was significantly lower than wild type
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	Our data suggest that OsGBP plays an important role in leaf and endosperm starch biosynthesis by mediating the binding of GBSS proteins to developing starch granules
OsGBP	Os02g0135900	LOC_Os02g04330	starch	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	yield	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	endosperm	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	In the osgbp mutant, the extent of GBSSI and GBSSII binding to starch in the leaf and endosperm was significantly lower than wild type
OsGBP	Os02g0135900	LOC_Os02g04330	endosperm	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	Our data suggest that OsGBP plays an important role in leaf and endosperm starch biosynthesis by mediating the binding of GBSS proteins to developing starch granules
OsGBP	Os02g0135900	LOC_Os02g04330	grain weight	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	The total starch and amylose contents in osgbp mutants were significantly lower than those of wild type in leaves and grains, resulting in reduced grain weight and quality
OsGBP	Os02g0135900	LOC_Os02g04330	quality	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	The total starch and amylose contents in osgbp mutants were significantly lower than those of wild type in leaves and grains, resulting in reduced grain weight and quality
OsGBP	Os02g0135900	LOC_Os02g04330	quality	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	starch biosynthesis	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	Our data suggest that OsGBP plays an important role in leaf and endosperm starch biosynthesis by mediating the binding of GBSS proteins to developing starch granules
OsGBP	Os02g0135900	LOC_Os02g04330	starch biosynthesis	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP	Os02g0135900	LOC_Os02g04330	grain quality	GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield	This elucidation of the function of OsGBP enhances our understanding of the molecular basis of starch biosynthesis in rice and contributes information that can be potentially used for the genetic improvement of yield and grain quality
OsGBP1	Os06g0130600	LOC_Os06g04010	growth	Divergent functions of the GAGA-binding transcription factor family in rice.	Knock-down and knock-out of OsGBP1 promoted seedling growth and enhanced grain length, whereas overexpression of OsGBP1 exhibited the opposite effect on seedling growth and grain length, indicating that OsGBP1 repressed grain length and seedling growth
OsGBP1	Os06g0130600	LOC_Os06g04010	grain	Divergent functions of the GAGA-binding transcription factor family in rice.	Knock-down and knock-out of OsGBP1 promoted seedling growth and enhanced grain length, whereas overexpression of OsGBP1 exhibited the opposite effect on seedling growth and grain length, indicating that OsGBP1 repressed grain length and seedling growth
OsGBP1	Os06g0130600	LOC_Os06g04010	seedling	Divergent functions of the GAGA-binding transcription factor family in rice.	Knock-down and knock-out of OsGBP1 promoted seedling growth and enhanced grain length, whereas overexpression of OsGBP1 exhibited the opposite effect on seedling growth and grain length, indicating that OsGBP1 repressed grain length and seedling growth
OsGBP1	Os06g0130600	LOC_Os06g04010	grain length	Divergent functions of the GAGA-binding transcription factor family in rice.	Knock-down and knock-out of OsGBP1 promoted seedling growth and enhanced grain length, whereas overexpression of OsGBP1 exhibited the opposite effect on seedling growth and grain length, indicating that OsGBP1 repressed grain length and seedling growth
OsGBP1	Os06g0130600	LOC_Os06g04010	height	Divergent functions of the GAGA-binding transcription factor family in rice.	In addition, overexpression of OsGBP1 led to delayed flowering time and suppressed plant height
OsGBP1	Os06g0130600	LOC_Os06g04010	plant height	Divergent functions of the GAGA-binding transcription factor family in rice.	In addition, overexpression of OsGBP1 led to delayed flowering time and suppressed plant height
OsGBP1	Os06g0130600	LOC_Os06g04010	flowering time	Divergent functions of the GAGA-binding transcription factor family in rice.	In addition, overexpression of OsGBP1 led to delayed flowering time and suppressed plant height
OsGBP1	Os06g0130600	LOC_Os06g04010	flowering	Divergent functions of the GAGA-binding transcription factor family in rice.	In addition, overexpression of OsGBP1 led to delayed flowering time and suppressed plant height
OsGBP1	Os06g0130600	LOC_Os06g04010	seedling growth	Divergent functions of the GAGA-binding transcription factor family in rice.	Knock-down and knock-out of OsGBP1 promoted seedling growth and enhanced grain length, whereas overexpression of OsGBP1 exhibited the opposite effect on seedling growth and grain length, indicating that OsGBP1 repressed grain length and seedling growth
OsGBP3	Os10g0115200	LOC_Os10g02584	grain	Divergent functions of the GAGA-binding transcription factor family in rice.	In contrast, OsGBP3 induced grain length and plant height
OsGBP3	Os10g0115200	LOC_Os10g02584	grain	Divergent functions of the GAGA-binding transcription factor family in rice.	Grain length and plant height were decreased in OsGBP3RNAi lines and were increased in OsGBP3 overexpression lines
OsGBP3	Os10g0115200	LOC_Os10g02584	grain length	Divergent functions of the GAGA-binding transcription factor family in rice.	In contrast, OsGBP3 induced grain length and plant height
OsGBP3	Os10g0115200	LOC_Os10g02584	grain length	Divergent functions of the GAGA-binding transcription factor family in rice.	Grain length and plant height were decreased in OsGBP3RNAi lines and were increased in OsGBP3 overexpression lines
OsGBP3	Os10g0115200	LOC_Os10g02584	height	Divergent functions of the GAGA-binding transcription factor family in rice.	In contrast, OsGBP3 induced grain length and plant height
OsGBP3	Os10g0115200	LOC_Os10g02584	height	Divergent functions of the GAGA-binding transcription factor family in rice.	Grain length and plant height were decreased in OsGBP3RNAi lines and were increased in OsGBP3 overexpression lines
OsGBP3	Os10g0115200	LOC_Os10g02584	plant height	Divergent functions of the GAGA-binding transcription factor family in rice.	In contrast, OsGBP3 induced grain length and plant height
OsGBP3	Os10g0115200	LOC_Os10g02584	plant height	Divergent functions of the GAGA-binding transcription factor family in rice.	Grain length and plant height were decreased in OsGBP3RNAi lines and were increased in OsGBP3 overexpression lines
OsGBSSII	Os07g0412100	LOC_Os07g22930	starch	Cloning and characterization of the granule-bound starch synthase II gene in rice: gene expression is regulated by the nitrogen level, sugar and circadian rhythm	OsGBSSII was mainly expressed in leaves and its protein was exclusively bound to starch granules in rice leaves, which suggests that the amylose in rice leaves is synthesized by OsGBSSII
OsGBSSII	Os07g0412100	LOC_Os07g22930	nitrate	Cloning and characterization of the granule-bound starch synthase II gene in rice: gene expression is regulated by the nitrogen level, sugar and circadian rhythm	N-starvation-induced expression of OsGBSSII could be repressed by supplying nitrate, ammonia or amino acid (glutamic acid or glutamine), glucosamine (an inhibitor of hexokinase) or dark conditions
OsGBSSII	Os07g0412100	LOC_Os07g22930	nitrogen	Cloning and characterization of the granule-bound starch synthase II gene in rice: gene expression is regulated by the nitrogen level, sugar and circadian rhythm	21) was cloned and defined as OsGBSSII based on a Nitrogen (N)-starvation-induced cDNA library constructed using the rapid subtraction hybridization method
OsGCD1	Os01g0801700	LOC_Os01g58750	endosperm	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.
OsGCD1	Os01g0801700	LOC_Os01g58750	endosperm	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.	Our findings reveal that OsGCD1 is essential for rice fertility and is required for dorsal-ventral pattern formation and endosperm free nucleus positioning, suggesting a critical role in sexual reproduction of both monocotyledon and dicotyledon plants
OsGCD1	Os01g0801700	LOC_Os01g58750	nucleus	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.	Our findings reveal that OsGCD1 is essential for rice fertility and is required for dorsal-ventral pattern formation and endosperm free nucleus positioning, suggesting a critical role in sexual reproduction of both monocotyledon and dicotyledon plants
OsGCD1	Os01g0801700	LOC_Os01g58750	fertility	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.
OsGCD1	Os01g0801700	LOC_Os01g58750	fertility	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.	Our findings reveal that OsGCD1 is essential for rice fertility and is required for dorsal-ventral pattern formation and endosperm free nucleus positioning, suggesting a critical role in sexual reproduction of both monocotyledon and dicotyledon plants
OsGCD1	Os01g0801700	LOC_Os01g58750	endosperm development	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.
OsGCD1	Os01g0801700	LOC_Os01g58750	pollen	The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.	Here, we report that OsGCD1 (GAMETE CELLS DEFECTIVE1) dysfunction influenced pollen development and disrupted pollen germination
OsGCD1	Os01g0801700	LOC_Os01g58750	pollen	The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.	Our findings also indicate that osgcd1 mutation resulted in rice male sterility in which pollen has full cell viability and generated normal gametes, but lacks the potential to germinate
OsGCD1	Os01g0801700	LOC_Os01g58750	sterility	The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.	Our findings also indicate that osgcd1 mutation resulted in rice male sterility in which pollen has full cell viability and generated normal gametes, but lacks the potential to germinate
OsGCD1	Os01g0801700	LOC_Os01g58750	development	The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.	Here, we report that OsGCD1 (GAMETE CELLS DEFECTIVE1) dysfunction influenced pollen development and disrupted pollen germination
OsGCD1	Os01g0801700	LOC_Os01g58750	male sterility	The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.	Our findings also indicate that osgcd1 mutation resulted in rice male sterility in which pollen has full cell viability and generated normal gametes, but lacks the potential to germinate
OsGCD1	Os01g0801700	LOC_Os01g58750	pollen development	The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.	Here, we report that OsGCD1 (GAMETE CELLS DEFECTIVE1) dysfunction influenced pollen development and disrupted pollen germination
OsGCS1	Os05g0269500	LOC_Os05g18730	starch	High-quality sugar production by osgcs1 rice	Trancriptomic analysis revealed that the osgcs1 ovules had downregulation of starch biosynthetic genes, which would otherwise have converted sucrose to starch
OsGCS1	Os05g0269500	LOC_Os05g18730	sugar	High-quality sugar production by osgcs1 rice	High-quality sugar production by osgcs1 rice
OsGCS1	Os05g0269500	LOC_Os05g18730	sucrose	High-quality sugar production by osgcs1 rice	Trancriptomic analysis revealed that the osgcs1 ovules had downregulation of starch biosynthetic genes, which would otherwise have converted sucrose to starch
OsGDH2	Os04g0543900	LOC_Os04g45970	crown root	Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase	Real-time PCR analysis showed that OsIDHa and OsIDHc;1 transcripts, but not OsGDH1 and OsGDH2 transcripts, accumulated in a similar manner to NADH-GOGAT mRNA along the crown roots after the supply of different forms of inorganic nitrogen
OsGDH2	Os04g0543900	LOC_Os04g45970	salt	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	Salt stress clearly up-regulated the expression of OsGDH2 and OsGDH3 in old leaves, while strongly down-regulated expression of OsGS2 and OsFd-GOGAT in old leaves
OsGDH2	Os04g0543900	LOC_Os04g45970	root	Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase	Real-time PCR analysis showed that OsIDHa and OsIDHc;1 transcripts, but not OsGDH1 and OsGDH2 transcripts, accumulated in a similar manner to NADH-GOGAT mRNA along the crown roots after the supply of different forms of inorganic nitrogen
OsGDH2	Os04g0543900	LOC_Os04g45970	crown	Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase	Real-time PCR analysis showed that OsIDHa and OsIDHc;1 transcripts, but not OsGDH1 and OsGDH2 transcripts, accumulated in a similar manner to NADH-GOGAT mRNA along the crown roots after the supply of different forms of inorganic nitrogen
OsGDH2	Os04g0543900	LOC_Os04g45970	nitrogen	Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase	Real-time PCR analysis showed that OsIDHa and OsIDHc;1 transcripts, but not OsGDH1 and OsGDH2 transcripts, accumulated in a similar manner to NADH-GOGAT mRNA along the crown roots after the supply of different forms of inorganic nitrogen
OsGDH2	Os04g0543900	LOC_Os04g45970	salt stress	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	Salt stress clearly up-regulated the expression of OsGDH2 and OsGDH3 in old leaves, while strongly down-regulated expression of OsGS2 and OsFd-GOGAT in old leaves
OsGDH3	Os02g0650900	LOC_Os02g43470	root	Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase	These genes, except OsGDH3, were expressed in the roots
OsGDI3	Os03g0277000	LOC_Os03g16900	temperature	Rice GDP dissociation inhibitor 3 inhibits OsMAPK2 activity through physical interaction	In this study, we show that OsGDI3 complement the yeast sec19-1 mutant, a temperature-sensitive allele of the yeast GDI gene, suggesting that OsGDI3 is a functional ortholog of yeast GDI
OsGDPD2	Os02g0514500	LOC_Os02g31030	Pi	A Novel Glycerophosphodiester Phosphodiesterase Improves Phosphate Deficiency Tolerance.	Here, we show that OsGDPD2 is a Pi deficiency responsive gene which is transcriptionally regulated by OsPHR2
OsGDPD2	Os02g0514500	LOC_Os02g31030	Pi	A Novel Glycerophosphodiester Phosphodiesterase Improves Phosphate Deficiency Tolerance.	Conversely, silencing of OsGDPD2 led to decreased GDPD activity and Pi content
OsGDPD2	Os02g0514500	LOC_Os02g31030	Pi	A Novel Glycerophosphodiester Phosphodiesterase Improves Phosphate Deficiency Tolerance.	Thus, present study provides insights into novel physiological roles of OsGDPD2 in low Pi acclimation in rice
OsGDPD2	Os02g0514500	LOC_Os02g31030	pi	A Novel Glycerophosphodiester Phosphodiesterase Improves Phosphate Deficiency Tolerance.	Here, we show that OsGDPD2 is a Pi deficiency responsive gene which is transcriptionally regulated by OsPHR2
OsGDPD2	Os02g0514500	LOC_Os02g31030	pi	A Novel Glycerophosphodiester Phosphodiesterase Improves Phosphate Deficiency Tolerance.	Conversely, silencing of OsGDPD2 led to decreased GDPD activity and Pi content
OsGDPD2	Os02g0514500	LOC_Os02g31030	pi	A Novel Glycerophosphodiester Phosphodiesterase Improves Phosphate Deficiency Tolerance.	Thus, present study provides insights into novel physiological roles of OsGDPD2 in low Pi acclimation in rice
OsGELP110	Os11g0129500	LOC_Os11g03520	anther	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP34 is distant from OsGELP110 and OsGELP115 in sequence, and osgelp34 and osgelp110/osgelp115 mutants were different in anther morphology despite both were male sterile
OsGELP110	Os11g0129500	LOC_Os11g03520	sterile	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	Individual knockout of OsGELP110 and OsGELP115 did not affect the plant fertility, but double knockout of both genes altered the exine structure and rendered the plant male sterile
OsGELP110	Os11g0129500	LOC_Os11g03520	sterile	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP34 is distant from OsGELP110 and OsGELP115 in sequence, and osgelp34 and osgelp110/osgelp115 mutants were different in anther morphology despite both were male sterile
OsGELP110	Os11g0129500	LOC_Os11g03520	meiotic	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP110 was previously identified as a gene differentially expressed in meiotic anthers
OsGELP115	Os12g0126100	None	anther	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP34 is distant from OsGELP110 and OsGELP115 in sequence, and osgelp34 and osgelp110/osgelp115 mutants were different in anther morphology despite both were male sterile
OsGELP115	Os12g0126100	None	sterile	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	Individual knockout of OsGELP110 and OsGELP115 did not affect the plant fertility, but double knockout of both genes altered the exine structure and rendered the plant male sterile
OsGELP115	Os12g0126100	None	sterile	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP34 is distant from OsGELP110 and OsGELP115 in sequence, and osgelp34 and osgelp110/osgelp115 mutants were different in anther morphology despite both were male sterile
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	microspore	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice	OsGEN-L-RNAi plants lacked mature pollen, resulting from a defect in early microspore development
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	microspore	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice	Our results suggest that OsGEN-L plays an essential role in DNA metabolism required for early microspore development in rice
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	microspore	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	sterile	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice	Most of the OsGEN-L-RNAi plants displayed low fertility, and some of them were male-sterile
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	microspore	The OsGEN-L protein from Oryza sativa possesses Holliday junction resolvase activity as well as 5 '-flap endonuclease activity	OsGEN-L has a 5'-flap endonuclease activity and plays an essential role in rice microspore development
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	fertility	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice	Most of the OsGEN-L-RNAi plants displayed low fertility, and some of them were male-sterile
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	anther	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice	A OsGEN-L-green fluorescent protein (GFP) fusion protein was localized in the nucleus, and the OsGEN-L promoter was specifically active in the anthers
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	pollen	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice	OsGEN-L-RNAi plants lacked mature pollen, resulting from a defect in early microspore development
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	sterility	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice	RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	development	Resolvase OsGEN1 mediates DNA repair by homologous recombination.	In contrast, depletion of OsSEND1 had no effects on plant development and did not enhance osgen1 defects
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	meiosis	Resolvase OsGEN1 mediates DNA repair by homologous recombination.	We first investigated the role of OsGEN1 during meiosis and found a reduction in chiasma frequency by ~6% in osgen1 mutants, compared to wild type, suggesting a possible involvement of OsGEN1 in the formation of crossovers
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	microspore	Resolvase OsGEN1 mediates DNA repair by homologous recombination.	Post-meiosis, OsGEN1 foci were detected in wild-type microspore nuclei, but not in the osgen1 mutant concomitant with an increase in double strand breaks
OsGEN-L|OsGEN1	Os09g0521900	LOC_Os09g35000	plant development	Resolvase OsGEN1 mediates DNA repair by homologous recombination.	In contrast, depletion of OsSEND1 had no effects on plant development and did not enhance osgen1 defects
OsGER4	Os01g0284500	LOC_Os01g18170	vascular bundle	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 The ProGER4::GUS reporter line showed that OsGER4 is a hormone-responsive gene involved in various stress responses, mainly confined to epidermal and vascular tissues during CR primordia development and to vascular bundles of mature crown and lateral roots
OsGER4	Os01g0284500	LOC_Os01g18170	root	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.
OsGER4	Os01g0284500	LOC_Os01g18170	development	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.
OsGER4	Os01g0284500	LOC_Os01g18170	development	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 The ProGER4::GUS reporter line showed that OsGER4 is a hormone-responsive gene involved in various stress responses, mainly confined to epidermal and vascular tissues during CR primordia development and to vascular bundles of mature crown and lateral roots
OsGER4	Os01g0284500	LOC_Os01g18170	development	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 Phenotyping experiments with OsGER4 knockout mutants confirmed that this gene is required for CR development under exogenous JA treatment
OsGER4	Os01g0284500	LOC_Os01g18170	auxin	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 Notable changes in OsGER4 expression patterns caused by the polar auxin transport inhibitor NPA support its connection to auxin signaling
OsGER4	Os01g0284500	LOC_Os01g18170	stress	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 The ProGER4::GUS reporter line showed that OsGER4 is a hormone-responsive gene involved in various stress responses, mainly confined to epidermal and vascular tissues during CR primordia development and to vascular bundles of mature crown and lateral roots
OsGER4	Os01g0284500	LOC_Os01g18170	ja	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 A subsequent genome-wide association study and gene expression analyses pinpointed a strong association between the Germin-like protein OsGER4 and the increase in CR number under exogenous JA treatment
OsGER4	Os01g0284500	LOC_Os01g18170	ja	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 Phenotyping experiments with OsGER4 knockout mutants confirmed that this gene is required for CR development under exogenous JA treatment
OsGER4	Os01g0284500	LOC_Os01g18170	JA	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 A subsequent genome-wide association study and gene expression analyses pinpointed a strong association between the Germin-like protein OsGER4 and the increase in CR number under exogenous JA treatment
OsGER4	Os01g0284500	LOC_Os01g18170	JA	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 Phenotyping experiments with OsGER4 knockout mutants confirmed that this gene is required for CR development under exogenous JA treatment
OsGER4	Os01g0284500	LOC_Os01g18170	crown root development	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.
OsGER4	Os01g0284500	LOC_Os01g18170	root development	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.
OsGER4	Os01g0284500	LOC_Os01g18170	auxin transport	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 Notable changes in OsGER4 expression patterns caused by the polar auxin transport inhibitor NPA support its connection to auxin signaling
OsGER4	Os01g0284500	LOC_Os01g18170	jasmonic	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.
OsGER4	Os01g0284500	LOC_Os01g18170	jasmonic acid	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.
OsGER4	Os01g0284500	LOC_Os01g18170	crown	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.
OsGER4	Os01g0284500	LOC_Os01g18170	crown	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 The ProGER4::GUS reporter line showed that OsGER4 is a hormone-responsive gene involved in various stress responses, mainly confined to epidermal and vascular tissues during CR primordia development and to vascular bundles of mature crown and lateral roots
OsGER4	Os01g0284500	LOC_Os01g18170	crown root	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.
OsGER4	Os01g0284500	LOC_Os01g18170	lateral root	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 The ProGER4::GUS reporter line showed that OsGER4 is a hormone-responsive gene involved in various stress responses, mainly confined to epidermal and vascular tissues during CR primordia development and to vascular bundles of mature crown and lateral roots
OsGER4	Os01g0284500	LOC_Os01g18170	stress response	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 The ProGER4::GUS reporter line showed that OsGER4 is a hormone-responsive gene involved in various stress responses, mainly confined to epidermal and vascular tissues during CR primordia development and to vascular bundles of mature crown and lateral roots
OsGER4	Os01g0284500	LOC_Os01g18170	 ja 	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 A subsequent genome-wide association study and gene expression analyses pinpointed a strong association between the Germin-like protein OsGER4 and the increase in CR number under exogenous JA treatment
OsGER4	Os01g0284500	LOC_Os01g18170	 ja 	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	 Phenotyping experiments with OsGER4 knockout mutants confirmed that this gene is required for CR development under exogenous JA treatment
OsGERLP	Os03g0168900	LOC_Os03g07290	tolerance	OsGERLP: A novel aluminum tolerance rice gene isolated from a local cultivar in Indonesia.	In conclusion, the OsGERLP gene could act as a regulator for other Al tolerance genes, with the potential to develop Al-tolerant rice varieties
OsGERLP	Os03g0168900	LOC_Os03g07290	Al tolerance	OsGERLP: A novel aluminum tolerance rice gene isolated from a local cultivar in Indonesia.	In conclusion, the OsGERLP gene could act as a regulator for other Al tolerance genes, with the potential to develop Al-tolerant rice varieties
OsGF14d	Os11g0546900	LOC_Os11g34450	cold stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice
OsGF14d	Os11g0546900	LOC_Os11g34450	cold stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	The osgf14d knockout mutant plants were more sensitive to cold stress than wild-type rice plants, indicating that OsGF14d is a positive factor in the response to cold stress
OsGF14d	Os11g0546900	LOC_Os11g34450	cold stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	These results suggested that the RING E3 Ub ligase OsATL38 negatively regulates the cold stress response in rice via mono-ubiquitination of OsGF14d 14-3-3 protein
OsGF14d	Os11g0546900	LOC_Os11g34450	stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice
OsGF14d	Os11g0546900	LOC_Os11g34450	stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	The osgf14d knockout mutant plants were more sensitive to cold stress than wild-type rice plants, indicating that OsGF14d is a positive factor in the response to cold stress
OsGF14d	Os11g0546900	LOC_Os11g34450	stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	These results suggested that the RING E3 Ub ligase OsATL38 negatively regulates the cold stress response in rice via mono-ubiquitination of OsGF14d 14-3-3 protein
OsGF14d	Os11g0546900	LOC_Os11g34450	cold	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice
OsGF14d	Os11g0546900	LOC_Os11g34450	cold	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	The osgf14d knockout mutant plants were more sensitive to cold stress than wild-type rice plants, indicating that OsGF14d is a positive factor in the response to cold stress
OsGF14d	Os11g0546900	LOC_Os11g34450	cold	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	These results suggested that the RING E3 Ub ligase OsATL38 negatively regulates the cold stress response in rice via mono-ubiquitination of OsGF14d 14-3-3 protein
OsGF14d	Os11g0546900	LOC_Os11g34450	stress response	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice
OsGF14d	Os11g0546900	LOC_Os11g34450	stress response	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	These results suggested that the RING E3 Ub ligase OsATL38 negatively regulates the cold stress response in rice via mono-ubiquitination of OsGF14d 14-3-3 protein
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	gibberellin	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	ga	Accumulation of Phosphorylated Repressor for Gibberellin Signaling in an F-box Mutant	In gid2, a repressor for GA signaling, SLR1, was highly accumulated in a phosphorylated form and GA increased its concentration, whereas SLR1 was rapidly degraded by GA through ubiquitination in the wild type
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	ga	Accumulation of Phosphorylated Repressor for Gibberellin Signaling in an F-box Mutant	We conclude that GID2 is a positive regulator of GA signaling and that regulated degradation of SLR1 is initiated through GA-dependent phosphorylation and finalized by an SCF(GID2)-proteasome pathway
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	defense	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	Enhanced resistance was correlated with GF14e silencing prior to and after development of the LM phenotype, higher basal expression of a defense response peroxidase gene (POX22
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	defense	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	Together, our findings suggest that GF14e negatively affects the induction of plant defense response genes, cell death and broad-spectrum resistance in rice
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	ga	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	gibberellin	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	dwarf	Accumulation of Phosphorylated Repressor for Gibberellin Signaling in an F-box Mutant	We isolated and characterized a rice GA-insensitive dwarf mutant, gid2
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	gibberellin	Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice	It is assumed that interaction between GIBBERELLIN INSENSITIVE DWARF1 (GID1) and the N-terminal DELLA/TVHYNP motif of SLR1 triggers F-box protein GID2-mediated SLR1 degradation
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	disease	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	To determine whether the GF14e gene plays a direct role in resistance to disease in rice, we suppressed its expression by RNAi silencing
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	disease	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	defense response	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	Enhanced resistance was correlated with GF14e silencing prior to and after development of the LM phenotype, higher basal expression of a defense response peroxidase gene (POX22
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	defense response	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	Together, our findings suggest that GF14e negatively affects the induction of plant defense response genes, cell death and broad-spectrum resistance in rice
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	disease resistance	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	dwarf	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	xoo	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	GF14e-silenced rice plants showed high levels of resistance to a virulent strain of Xoo compared with plants that were not silenced
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	shoot	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	cell death	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	Together, our findings suggest that GF14e negatively affects the induction of plant defense response genes, cell death and broad-spectrum resistance in rice
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	cell death	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	gibberellin	GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice	Previously, we identified a rice F-box protein, gibberellin-insensitive dwarf2 (GID2), which is essential for GA-mediated DELLA protein degradation
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	gibberellin	GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice	GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	seed germination	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	seed	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	dwarf	Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice	It is assumed that interaction between GIBBERELLIN INSENSITIVE DWARF1 (GID1) and the N-terminal DELLA/TVHYNP motif of SLR1 triggers F-box protein GID2-mediated SLR1 degradation
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	ga	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	ga	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	The level of SLR1 protein in gid2 was decreased by loss of GID1 function or treatment with a GA biosynthesis inhibitor, and dwarfism was enhanced
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	ga	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	These results indicate that derepression of SLR1 repressive activity can be accomplished by GA and GID1 alone and does not require F-box (GID2) function
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	ga	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	Evidence for GA signaling without GID2 was also provided by the expression behavior of GA-regulated genes such as GA-20oxidase1, GID1, and SLR1 in the gid2 mutant
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	homeostasis	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	An exception is the GA-insensitive F-box mutant gid2, which shows milder dwarfism than mutants such as gid1 and cps even though it accumulates higher levels of SLR1
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	The level of SLR1 protein in gid2 was decreased by loss of GID1 function or treatment with a GA biosynthesis inhibitor, and dwarfism was enhanced
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	Conversely, overproduction of GID1 or treatment with GA(3) increased the SLR1 level in gid2 and reduced dwarfism
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	dwarf	GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice	Previously, we identified a rice F-box protein, gibberellin-insensitive dwarf2 (GID2), which is essential for GA-mediated DELLA protein degradation
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	resistance	OsGF14e positively regulates panicle blast resistance in rice.	OsGF14e positively regulates panicle blast resistance in rice.
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	panicle	OsGF14e positively regulates panicle blast resistance in rice.	OsGF14e positively regulates panicle blast resistance in rice.
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	blast	OsGF14e positively regulates panicle blast resistance in rice.	OsGF14e positively regulates panicle blast resistance in rice.
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	blast resistance	OsGF14e positively regulates panicle blast resistance in rice.	OsGF14e positively regulates panicle blast resistance in rice.
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	gibberellin	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	ga	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.	Overall, these results indicated that P7-2 functioned as a component of the SCF complex in rice, and interaction of P7-2 with GID2 implied possible roles of the GA signaling pathway during RBSDV infection
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	dwarf	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	Gibberellin	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.
OsGF14e|GF14e|GID2	Os02g0580300	LOC_Os02g36974	GA	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.	Overall, these results indicated that P7-2 functioned as a component of the SCF complex in rice, and interaction of P7-2 with GID2 implied possible roles of the GA signaling pathway during RBSDV infection
OsGF14h	Os11g0609600	LOC_Os11g39540	transcription factor	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
OsGF14h	Os11g0609600	LOC_Os11g39540	development	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 Here, we identify a 14-3-3 protein-coding gene OsGF14h in weedy rice that confers anaerobic germination and anaerobic seedling development tolerance
OsGF14h	Os11g0609600	LOC_Os11g39540	seedling	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 Here, we identify a 14-3-3 protein-coding gene OsGF14h in weedy rice that confers anaerobic germination and anaerobic seedling development tolerance
OsGF14h	Os11g0609600	LOC_Os11g39540	tolerance	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 Here, we identify a 14-3-3 protein-coding gene OsGF14h in weedy rice that confers anaerobic germination and anaerobic seedling development tolerance
OsGF14h	Os11g0609600	LOC_Os11g39540	ABA	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
OsGF14h	Os11g0609600	LOC_Os11g39540	ga	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
OsGF14h	Os11g0609600	LOC_Os11g39540	 ga 	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
OsGF14h	Os11g0609600	LOC_Os11g39540	GA	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
OsGF14h	Os11g0609600	LOC_Os11g39540	pericarp	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 Meanwhile, OsGF14h co-inheritance with the Rc (red pericarp gene) promotes divergence between temperate japonica cultivated rice and temperate japonica weedy rice through artificial and natural selection
OsGF14h	Os11g0609600	LOC_Os11g39540	GA biosynthesis	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
OsGF14h	Os11g0609600	LOC_Os11g39540	 ABA 	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
OsGGP	Os12g0190000	LOC_Os12g08810	growth	Ascorbate biosynthesis and its involvement in stress tolerance and plant development in rice (Oryza sativa L.).	All plants except for KO mutants of OsGGP showed distinct peaks in foliar AsA concentrations during the growth, which were consistent with up-regulation of OsGGP, suggesting that OsGGP plays a pivotal role in regulating foliar AsA levels during different growth stages
OsGGP	Os12g0190000	LOC_Os12g08810	biomass	Ascorbate biosynthesis and its involvement in stress tolerance and plant development in rice (Oryza sativa L.).	Mutants showed lower biomass production than their wild-types, especially when OsGGP was lacking (around 80 % reductions)
OsGGP	Os12g0190000	LOC_Os12g08810	growth	Effect of Rice GDP-L-Galactose Phosphorylase Constitutive Overexpression on Ascorbate Concentration, Stress Tolerance, and Iron Bioavailability in Rice	Foliar ascorbate concentrations were significantly increased in 35S-OsGGP plants in the vegetative growth phase relative to NS, but significantly reduced at the reproductive growth phase and were associated with reduced OsGGP transcript levels
OsGGP	Os12g0190000	LOC_Os12g08810	vegetative	Effect of Rice GDP-L-Galactose Phosphorylase Constitutive Overexpression on Ascorbate Concentration, Stress Tolerance, and Iron Bioavailability in Rice	Foliar ascorbate concentrations were significantly increased in 35S-OsGGP plants in the vegetative growth phase relative to NS, but significantly reduced at the reproductive growth phase and were associated with reduced OsGGP transcript levels
OsGGP	Os12g0190000	LOC_Os12g08810	reproductive	Effect of Rice GDP-L-Galactose Phosphorylase Constitutive Overexpression on Ascorbate Concentration, Stress Tolerance, and Iron Bioavailability in Rice	Foliar ascorbate concentrations were significantly increased in 35S-OsGGP plants in the vegetative growth phase relative to NS, but significantly reduced at the reproductive growth phase and were associated with reduced OsGGP transcript levels
OsGGP	Os12g0190000	LOC_Os12g08810	reproductive growth	Effect of Rice GDP-L-Galactose Phosphorylase Constitutive Overexpression on Ascorbate Concentration, Stress Tolerance, and Iron Bioavailability in Rice	Foliar ascorbate concentrations were significantly increased in 35S-OsGGP plants in the vegetative growth phase relative to NS, but significantly reduced at the reproductive growth phase and were associated with reduced OsGGP transcript levels
OsGGPPS1	Os07g0580900	LOC_Os07g39270	stroma	A recruiting protein of geranylgeranyl diphosphate synthase controls metabolic flux toward chlorophyll biosynthesis in rice.	A functionally active homodimeric enzyme composed of two OsGGPPS1 subunits is located in the stroma
OsGGPPS1	Os07g0580900	LOC_Os07g39270	stroma	A recruiting protein of geranylgeranyl diphosphate synthase controls metabolic flux toward chlorophyll biosynthesis in rice.	Taken together, genetic and biochemical analyses suggest OsGRP functions in recruiting OsGGPPS1 from the stroma toward thylakoid membranes, thus providing a mechanism to control GGPP flux toward chlorophyll biosynthesis
OsGGPPS2|OsGRP	Os02g0668100	LOC_Os02g44780	stroma	A recruiting protein of geranylgeranyl diphosphate synthase controls metabolic flux toward chlorophyll biosynthesis in rice.	Taken together, genetic and biochemical analyses suggest OsGRP functions in recruiting OsGGPPS1 from the stroma toward thylakoid membranes, thus providing a mechanism to control GGPP flux toward chlorophyll biosynthesis
OsGGT	Os10g0555100	LOC_Os10g40640	cold stress	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	The accumulation of OsGGT mRNA in FR13A also increased in response to ethylene, gibberellin, abscisic acid, drought and salt treatment, but methyl jasmonate treatment and cold stress had no effect on expression
OsGGT	Os10g0555100	LOC_Os10g40640	ethylene	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	The accumulation of OsGGT mRNA in FR13A also increased in response to ethylene, gibberellin, abscisic acid, drought and salt treatment, but methyl jasmonate treatment and cold stress had no effect on expression
OsGGT	Os10g0555100	LOC_Os10g40640	jasmonate	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	The accumulation of OsGGT mRNA in FR13A also increased in response to ethylene, gibberellin, abscisic acid, drought and salt treatment, but methyl jasmonate treatment and cold stress had no effect on expression
OsGGT	Os10g0555100	LOC_Os10g40640	salt	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	The accumulation of OsGGT mRNA in FR13A also increased in response to ethylene, gibberellin, abscisic acid, drought and salt treatment, but methyl jasmonate treatment and cold stress had no effect on expression
OsGGT	Os10g0555100	LOC_Os10g40640	gibberellin	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	The accumulation of OsGGT mRNA in FR13A also increased in response to ethylene, gibberellin, abscisic acid, drought and salt treatment, but methyl jasmonate treatment and cold stress had no effect on expression
OsGGT	Os10g0555100	LOC_Os10g40640	submergence	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	A submergence-induced gene, OsGGT, was cloned from 7-day submerged rice (Oryza sativa L
OsGGT	Os10g0555100	LOC_Os10g40640	submergence	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	A time-course study showed that OsGGT-gene expression increased in FR13A during submergence but decreased in IR42 (submergence-intolerant cultivar, Indica)
OsGGT	Os10g0555100	LOC_Os10g40640	submergence	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	These results suggest that the OsGGT gene could be related to submergence stress and associated with a general defensive response to various environmental stresses
OsGGT	Os10g0555100	LOC_Os10g40640	submergence	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization
OsGGT	Os10g0555100	LOC_Os10g40640	salicylic acid	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	The expression of the OsGGT gene in FR13A was induced by salicylic acid and benzyladenine
OsGGT	Os10g0555100	LOC_Os10g40640	drought	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization	The accumulation of OsGGT mRNA in FR13A also increased in response to ethylene, gibberellin, abscisic acid, drought and salt treatment, but methyl jasmonate treatment and cold stress had no effect on expression
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	auxin	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'	This study provides an evidence in which the exogeneous auxin signal is transduced to OsGH3-2 through miR167 and ARF8 in sequence
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	auxin	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'	This proposed auxin signal transduction pathway, auxin-miR167-ARF8-OsGH3-2, could be, in conjunction with the other microRNA-mediated auxin signals, an important one for responding to exogeneous auxin and for determining the cellular free auxin level which guides appropriate auxin responses
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	drought	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	Expression of OsGH3-2 was induced by drought but was suppressed by cold
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	drought	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	It was conclude that OsGH3-2 modulates both endogenous free IAA and ABA homeostasis and differentially affects drought and cold tolerance in rice
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	drought	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	iaa	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	Here, it is reported that a GH3 family gene, OsGH3-2, encoding an enzyme catalysing IAA conjugation to amino acids, is involved in the modulation of ABA level and stress tolerance
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	iaa	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	Overexpression of OsGH3-2 in rice caused significant morphological aberrations related to IAA deficiency, such as dwarfism, smaller leaves, and fewer crown roots and root hairs
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	iaa	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	It was conclude that OsGH3-2 modulates both endogenous free IAA and ABA homeostasis and differentially affects drought and cold tolerance in rice
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	 ABA 	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	Here, it is reported that a GH3 family gene, OsGH3-2, encoding an enzyme catalysing IAA conjugation to amino acids, is involved in the modulation of ABA level and stress tolerance
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	 ABA 	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	It was conclude that OsGH3-2 modulates both endogenous free IAA and ABA homeostasis and differentially affects drought and cold tolerance in rice
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	dwarf	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	Overexpression of OsGH3-2 in rice caused significant morphological aberrations related to IAA deficiency, such as dwarfism, smaller leaves, and fewer crown roots and root hairs
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	homeostasis	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	It was conclude that OsGH3-2 modulates both endogenous free IAA and ABA homeostasis and differentially affects drought and cold tolerance in rice
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	crown root	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	Overexpression of OsGH3-2 in rice caused significant morphological aberrations related to IAA deficiency, such as dwarfism, smaller leaves, and fewer crown roots and root hairs
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	cold tolerance	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	It was conclude that OsGH3-2 modulates both endogenous free IAA and ABA homeostasis and differentially affects drought and cold tolerance in rice
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	cold tolerance	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	root	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	Overexpression of OsGH3-2 in rice caused significant morphological aberrations related to IAA deficiency, such as dwarfism, smaller leaves, and fewer crown roots and root hairs
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	crown	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	Overexpression of OsGH3-2 in rice caused significant morphological aberrations related to IAA deficiency, such as dwarfism, smaller leaves, and fewer crown roots and root hairs
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	iaa	'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'	It was also shown that expression of OsGH3-2, an rice IAA-conjugating enzyme, was positively regulated by ARF8
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	auxin	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	root hair	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice	Overexpression of OsGH3-2 in rice caused significant morphological aberrations related to IAA deficiency, such as dwarfism, smaller leaves, and fewer crown roots and root hairs
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	auxin	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances	 OsGH3-2 was dominantly expressed in the developing seeds and catalyzed IAA conjugation to amino acids, forming inactive auxin
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	seed	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances	 OsGH3-2 was identified by performing a genome-wide association study in rice germplasms with linkage mapping in chromosome substitution segment lines, contributing to the wide variation of seed viability in the populations after long periods of storage and artificial ageing
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	seed	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances	 Transgenic overexpression, knockout and knockdown experiments demonstrated that OsGH3-2 affected seed storability by regulating the accumulation level of abscisic acid
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	seed	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances	 Overexpression of OsGH3-2 significantly decreased seed storability, while knockout or knockdown of the gene enhanced seed storability compared with the wild type
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	seed	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances	 OsGH3-2 acted as a negative regulator of seed storability by modulating many genes related to the abscisic acid pathway and probably subsequently late embryogenesis-abundant proteins at the transcription level
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	iaa	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances	 OsGH3-2 was dominantly expressed in the developing seeds and catalyzed IAA conjugation to amino acids, forming inactive auxin
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	abscisic acid	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances	 Transgenic overexpression, knockout and knockdown experiments demonstrated that OsGH3-2 affected seed storability by regulating the accumulation level of abscisic acid
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	abscisic acid	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances	 OsGH3-2 acted as a negative regulator of seed storability by modulating many genes related to the abscisic acid pathway and probably subsequently late embryogenesis-abundant proteins at the transcription level
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	IAA	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances	 OsGH3-2 was dominantly expressed in the developing seeds and catalyzed IAA conjugation to amino acids, forming inactive auxin
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	root	Dual Roles of OsGH3.2 in Modulating Rice Root Morphology and Affecting Arbuscular Mycorrhizal Symbiosis.	Dual Roles of OsGH3.2 in Modulating Rice Root Morphology and Affecting Arbuscular Mycorrhizal Symbiosis.
OsGH3-2|OsGH3.2	Os01g0764800	LOC_Os01g55940	mycorrhizal symbiosis	Dual Roles of OsGH3.2 in Modulating Rice Root Morphology and Affecting Arbuscular Mycorrhizal Symbiosis.	Dual Roles of OsGH3.2 in Modulating Rice Root Morphology and Affecting Arbuscular Mycorrhizal Symbiosis.
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	defense response	Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice	Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	iaa	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	LC1 is transcribed in various tissues and encodes OsGH3-1, an indole-3-acetic acid (IAA) amido synthetase, whose homolog of Arabidopsis functions in maintaining the auxin homeostasis by conjugating excess IAA to various amino acids
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	lamina	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	Phenotypic analysis confirmed the exaggerated leaf angles of lc1-D due to the stimulated cell elongation at the lamina joint
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	auxin	Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice	Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	homeostasis	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	LC1 is transcribed in various tissues and encodes OsGH3-1, an indole-3-acetic acid (IAA) amido synthetase, whose homolog of Arabidopsis functions in maintaining the auxin homeostasis by conjugating excess IAA to various amino acids
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	auxin	The auxin-responsive GH3 gene family in rice (Oryza sativa)	The transcript abundance of nearly all OsGH3 genes is enhanced on auxin treatment, with the effect more pronounced on OsGH3-1, -2, and -4
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	cell elongation	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	Phenotypic analysis confirmed the exaggerated leaf angles of lc1-D due to the stimulated cell elongation at the lamina joint
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	iaa	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	LC1 is transcribed in various tissues and encodes OsGH3-1, an indole-3-acetic acid (IAA) amido synthetase, whose homolog of Arabidopsis functions in maintaining the auxin homeostasis by conjugating excess IAA to various amino acids
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	iaa	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	Indeed, recombinant LC1 can catalyze the conjugation of IAA to Ala, Asp, and Asn in vitro, which is consistent with the decreased free IAA amount in lc1-D mutant
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	iaa	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	lc1-D is insensitive to IAA and hypersensitive to exogenous BR, in agreement with the microarray analysis that reveals the altered transcriptions of genes involved in auxin signaling and BR biosynthesis
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	iaa	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	auxin	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	LC1 is transcribed in various tissues and encodes OsGH3-1, an indole-3-acetic acid (IAA) amido synthetase, whose homolog of Arabidopsis functions in maintaining the auxin homeostasis by conjugating excess IAA to various amino acids
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	auxin	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	lc1-D is insensitive to IAA and hypersensitive to exogenous BR, in agreement with the microarray analysis that reveals the altered transcriptions of genes involved in auxin signaling and BR biosynthesis
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	auxin	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	BR	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	lc1-D is insensitive to IAA and hypersensitive to exogenous BR, in agreement with the microarray analysis that reveals the altered transcriptions of genes involved in auxin signaling and BR biosynthesis
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	auxin	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	LC1 is transcribed in various tissues and encodes OsGH3-1, an indole-3-acetic acid (IAA) amido synthetase, whose homolog of Arabidopsis functions in maintaining the auxin homeostasis by conjugating excess IAA to various amino acids
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	defense	Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice	Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	leaf	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	Through genetic screening, a rice gain-of-function mutant leaf inclination1, lc1-D, was identified from the Shanghai T-DNA Insertion Population (SHIP)
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	leaf	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	Phenotypic analysis confirmed the exaggerated leaf angles of lc1-D due to the stimulated cell elongation at the lamina joint
OsGH3.1|OsGH3-1|LC1	Os01g0785400	LOC_Os01g57610	leaf	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control	Studies on the rice LEAF INCLINATION1 (LC1), an IAA-amido synthetase, reveal the effects of auxin in leaf inclination control
OsGH3.12	Os11g0186500	LOC_Os11g08340	resistance	The group I GH3 family genes encoding JA-Ile synthetase act as positive regulator in the resistance of rice to Xanthomonas oryzae pv. oryzae	The group I GH3 family genes encoding JA-Ile synthetase act as positive regulator in the resistance of rice to Xanthomonas oryzae pv. oryzae
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	drought	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	The activation of TLD1 reduced the IAA maxima at the lamina joint, shoot base, and nodes, resulting in subsequent alterations in plant architecture and tissue patterning but enhancing drought tolerance
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	drought	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	tiller	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	Here, we report a gain-of-function rice (Oryza sativa) mutant, tld1-D, characterized by (and named for) an increased number of tillers, enlarged leaf angles, and dwarfism
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	iaa	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	The activation of TLD1 reduced the IAA maxima at the lamina joint, shoot base, and nodes, resulting in subsequent alterations in plant architecture and tissue patterning but enhancing drought tolerance
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	iaa	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	Accordingly, the decreased level of free IAA in tld1-D due to the conjugation of IAA with amino acids greatly facilitated the accumulation of late-embryogenesis abundant mRNA compared with the wild type
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	dwarf	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	Here, we report a gain-of-function rice (Oryza sativa) mutant, tld1-D, characterized by (and named for) an increased number of tillers, enlarged leaf angles, and dwarfism
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	architecture	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	architecture	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	The activation of TLD1 reduced the IAA maxima at the lamina joint, shoot base, and nodes, resulting in subsequent alterations in plant architecture and tissue patterning but enhancing drought tolerance
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	lamina	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	The activation of TLD1 reduced the IAA maxima at the lamina joint, shoot base, and nodes, resulting in subsequent alterations in plant architecture and tissue patterning but enhancing drought tolerance
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	drought tolerance	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	The activation of TLD1 reduced the IAA maxima at the lamina joint, shoot base, and nodes, resulting in subsequent alterations in plant architecture and tissue patterning but enhancing drought tolerance
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	drought tolerance	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	shoot	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	The activation of TLD1 reduced the IAA maxima at the lamina joint, shoot base, and nodes, resulting in subsequent alterations in plant architecture and tissue patterning but enhancing drought tolerance
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	leaf	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation	Here, we report a gain-of-function rice (Oryza sativa) mutant, tld1-D, characterized by (and named for) an increased number of tillers, enlarged leaf angles, and dwarfism
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	shoot	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Knockout of OsbZIP49 led to reduced expression of both OsGH3-2 and OsGH3-13 within the shoot base, and increased accumulation of IAA and increased OsIAA20 expression levels were observed in transformants following gravistimulation
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	iaa	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Knockout of OsbZIP49 led to reduced expression of both OsGH3-2 and OsGH3-13 within the shoot base, and increased accumulation of IAA and increased OsIAA20 expression levels were observed in transformants following gravistimulation
OsGH3.13|TLD1|OsGH3-13	Os11g0528700	LOC_Os11g32520|LOC_Os11g32510	IAA	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Knockout of OsbZIP49 led to reduced expression of both OsGH3-2 and OsGH3-13 within the shoot base, and increased accumulation of IAA and increased OsIAA20 expression levels were observed in transformants following gravistimulation
OsGH3.6	Os05g0143800	LOC_Os05g05180	resistance	The group I GH3 family genes encoding JA-Ile synthetase act as positive regulator in the resistance of rice to Xanthomonas oryzae pv. oryzae	The group I GH3 family genes encoding JA-Ile synthetase act as positive regulator in the resistance of rice to Xanthomonas oryzae pv. oryzae
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	transcription factor	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	OsMGH3/OsGH3-8 is expressed abundantly in rice florets and is regulated by two related and redundant transcription factors, OsMADS1 and OsMADS6, but its contribution to flower development is not known
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	iaa	Kinetic basis for the conjugation of auxin by a GH3 family indole-acetic acid-amido synthetase	Here we use GH3-8 from Oryza sativa (rice; OsGH3-8), which functions as an indole-acetic acid (IAA)-amido synthetase, for detailed mechanistic studies
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	branching	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	Florets in OsMGH3 knock-down plants were affected in carpel development and pollen viability, both of which reduced fertility
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	vegetative	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	auxin	Kinetic basis for the conjugation of auxin by a GH3 family indole-acetic acid-amido synthetase	Steady-state kinetic analysis shows that the OsGH3-8 requires either Mg(2+) or Mn(2+) for maximal activity and is specific for aspartate but accepts asparagine as a substrate with a 45-fold decrease in catalytic efficiency and accepts other auxin analogs, including phenyl-acetic acid, indole butyric acid, and naphthalene-acetic acid, as acyl-acid substrates with 1
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	flower	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	OsMGH3/OsGH3-8 is expressed abundantly in rice florets and is regulated by two related and redundant transcription factors, OsMADS1 and OsMADS6, but its contribution to flower development is not known
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	panicle	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	inflorescence	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	root	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	In contrast, the down-regulation of endogenous OsMGH3 caused phenotypes consistent with auxin overproduction or activated signaling, such as ectopic rooting from aerial nodes
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	flower	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	Through a screen for OsMADS1 targets we identify a flower-specific Nt-gh3 type gene, OsMGH3, as a downstream gene
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	pollen	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	Florets in OsMGH3 knock-down plants were affected in carpel development and pollen viability, both of which reduced fertility
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	auxin	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	In contrast, the down-regulation of endogenous OsMGH3 caused phenotypes consistent with auxin overproduction or activated signaling, such as ectopic rooting from aerial nodes
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	auxin	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	architecture	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	auxin	Auxin plays a role in the adaptation of rice to anaerobic germination and seedling establishment.	 Reduced miR167 levels or overexpressing OsGH3-8 increase auxin metabolism, reduce endogenous levels of free IAA and enhance rice AG tolerance
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	tolerance	Auxin plays a role in the adaptation of rice to anaerobic germination and seedling establishment.	 Reduced miR167 levels or overexpressing OsGH3-8 increase auxin metabolism, reduce endogenous levels of free IAA and enhance rice AG tolerance
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	iaa	Auxin plays a role in the adaptation of rice to anaerobic germination and seedling establishment.	 The OsGH3-8 encodes an IAA-amido synthetase that functions to prevent free IAA accumulation
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	iaa	Auxin plays a role in the adaptation of rice to anaerobic germination and seedling establishment.	 Reduced miR167 levels or overexpressing OsGH3-8 increase auxin metabolism, reduce endogenous levels of free IAA and enhance rice AG tolerance
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	IAA	Auxin plays a role in the adaptation of rice to anaerobic germination and seedling establishment.	 The OsGH3-8 encodes an IAA-amido synthetase that functions to prevent free IAA accumulation
OsGH3.8|OsGH3-8|OsMGH3	Os07g0592600	LOC_Os07g40290	IAA	Auxin plays a role in the adaptation of rice to anaerobic germination and seedling establishment.	 Reduced miR167 levels or overexpressing OsGH3-8 increase auxin metabolism, reduce endogenous levels of free IAA and enhance rice AG tolerance
OsGH9A3	Os03g0736300	LOC_Os03g52630	cellulose	Global identification of multiple OsGH9 family members and their involvement in cellulose crystallinity modification in rice	Our results showed that OsGH9A3 and B5 possessed an extremely high co-expression with OsCESA1, 3, and 8 typical for cellulose biosynthesis in rice
OsGH9A3	Os03g0736300	LOC_Os03g52630	cellulose	Global identification of multiple OsGH9 family members and their involvement in cellulose crystallinity modification in rice	For the first time, OsGH9B1, 3, and 16 were characterized with the potential role in lignocellulose crystallinity alteration in rice, whereas OsGH9A3 and B5 were suggested for cellulose biosynthesis
OsGH9B1	Os02g0733300	LOC_Os02g50040	cellulose	Global identification of multiple OsGH9 family members and their involvement in cellulose crystallinity modification in rice	For the first time, OsGH9B1, 3, and 16 were characterized with the potential role in lignocellulose crystallinity alteration in rice, whereas OsGH9A3 and B5 were suggested for cellulose biosynthesis
OsGI	Os01g0182600	LOC_Os01g08700	grain	Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field	Time-course metabolome analyses of leaves revealed no trends of change in primary metabolites in osgi plants, and net photosynthetic rates and grain yields were not affected
OsGI	Os01g0182600	LOC_Os01g08700	dwarf	A study of phytohormone biosynthetic gene expression using a circadian clock-related mutant in rice	Consistently, osgi-1 plants showed semi-dwarf phenotype with reduced internode and leaf sheath elongation
OsGI	Os01g0182600	LOC_Os01g08700	reproductive	Circadian regulation of rice (Oryza sativa L.) CONSTANS-like gene transcripts	The S3574 and C60910 genes were expressed to similar extents during the vegetative and reproductive phases, like OsGI
OsGI	Os01g0182600	LOC_Os01g08700	sheath	A study of phytohormone biosynthetic gene expression using a circadian clock-related mutant in rice	Consistently, osgi-1 plants showed semi-dwarf phenotype with reduced internode and leaf sheath elongation
OsGI	Os01g0182600	LOC_Os01g08700	vegetative	Circadian regulation of rice (Oryza sativa L.) CONSTANS-like gene transcripts	The S3574 and C60910 genes were expressed to similar extents during the vegetative and reproductive phases, like OsGI
OsGI	Os01g0182600	LOC_Os01g08700	gibberellin	A study of phytohormone biosynthetic gene expression using a circadian clock-related mutant in rice	Here we found that mRNA levels of a few major genes encoding GA2-oxidase which can inactivate bioactive gibberellins (GAs) were remarkably increased in osgi-1 plants
OsGI	Os01g0182600	LOC_Os01g08700	flower	Adaptation of photoperiodic control pathways produces short-day flowering in rice	Overexpression of OsGI, an orthologue of the Arabidopsis GIGANTEA (GI) gene in transgenic rice, caused late flowering under both SD and LD conditions
OsGI	Os01g0182600	LOC_Os01g08700	heading date	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice	Hd3a expression is induced by Ehd1 (Early heading date 1) expression when blue light coincides with the morning phase set by OsGIGANTEA(OsGI)-dependent circadian clocks
OsGI	Os01g0182600	LOC_Os01g08700	flower	Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP)	In rice, OsGI, Hd1 and Hd3a were identified as orthologs of GI, CO and FT, respectively, and are also important regulators of flowering
OsGI	Os01g0182600	LOC_Os01g08700	flower	OsELF3 is involved in circadian clock regulation for promoting flowering under long-day conditions in rice	Further investigations showed that the expression of OsGI and Ghd7 was up-regulated in the oself3 mutant, indicating that OsELF3 acts as a negative regulator upstream of OsGI and Ghd7 in the flowering-time control under long-day conditions
OsGI	Os01g0182600	LOC_Os01g08700	yield	Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field	Time-course metabolome analyses of leaves revealed no trends of change in primary metabolites in osgi plants, and net photosynthetic rates and grain yields were not affected
OsGI	Os01g0182600	LOC_Os01g08700	heading date	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	Transcript levels of OsGI, phytochrome genes, and Early heading date3 (Ehd3), which function upstream of Ghd7, were unchanged in the mutant
OsGI	Os01g0182600	LOC_Os01g08700	leaf	Physiological significance of the plant circadian clock in natural field conditions	Recently, an extensive time-course transcriptome analysis of rice (Oryza sativa) leaves in natural field conditions revealed that OsGIGANTEA, the sole rice ortholog of the Arabidopsis GIGANTEA gene, governs the robust diurnal rhythm of rice leaf transcriptomes even under natural diurnal conditions; rice Osgi mutants exhibited severely defective transcriptome rhythms under strong diurnal changes in environmental cues
OsGI	Os01g0182600	LOC_Os01g08700	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Flowering genes downstream of OsPRR1 such as OsGI and Hd1 were down regulated in the A654 mutant
OsGI	Os01g0182600	LOC_Os01g08700	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Together, these results suggest that overexpression of OsLF might repress expression of OsGI and Hd1 by competing with OsPRR1 in interacting with OsPIL13 and OsPIL15 and thus induce late flowering
OsGI	Os01g0182600	LOC_Os01g08700	grain yield	Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field	Time-course metabolome analyses of leaves revealed no trends of change in primary metabolites in osgi plants, and net photosynthetic rates and grain yields were not affected
OsGI	Os01g0182600	LOC_Os01g08700	leaf	A study of phytohormone biosynthetic gene expression using a circadian clock-related mutant in rice	Consistently, osgi-1 plants showed semi-dwarf phenotype with reduced internode and leaf sheath elongation
OsGI	Os01g0182600	LOC_Os01g08700	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	Transcript levels of three flowering regulators-Ehd1, OsMADS14, and Hd3a-were decreased in these mutants, whereas those of OsGI and Hd1 were unchanged
OsGI	Os01g0182600	LOC_Os01g08700	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	To further investigate the relationship with other flowering promoters, we generated transgenic plants in which expression of Ehd1 or OsGI was suppressed
OsGI	Os01g0182600	LOC_Os01g08700	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	In summary, OsMADS51 is a novel flowering promoter that transmits a SD promotion signal from OsGI to Ehd1
OsGI	Os01g0182600	LOC_Os01g08700	flower	Isolation of Rice Genes Possibly Involved in the Photoperiodic Control of Flowering by a Fluorescent Differential Display Method	The expression patterns of the rice homolog of GI, OsGI, were similar to those of the Arabidopsis GI, suggesting the conservation of some mechanisms for the photoperiodic regulation of flowering between these two species
OsGI	Os01g0182600	LOC_Os01g08700	tolerance	Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.	Results showed that mutation of OsGI conferred tolerance to osmotic stress generated by polyethylene glycol (PEG), increased proline and sucrose contents, and accelerated stomata movement
OsGI	Os01g0182600	LOC_Os01g08700	stress	Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.	Results showed that mutation of OsGI conferred tolerance to osmotic stress generated by polyethylene glycol (PEG), increased proline and sucrose contents, and accelerated stomata movement
OsGI	Os01g0182600	LOC_Os01g08700	stress	Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.	In addition, qRT-PCR and microarray analysis revealed that the transcript abundance of some osmotic stress response genes, such as OsDREB1E, OsAP37, OsAP59, OsLIP9, OsLEA3, OsRAB16A, and OsSalT, was significantly higher in osgi than in WT plants, suggesting that OsGI might be a negative regulator in the osmotic stress response in rice
OsGI	Os01g0182600	LOC_Os01g08700	stomata	Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.	Results showed that mutation of OsGI conferred tolerance to osmotic stress generated by polyethylene glycol (PEG), increased proline and sucrose contents, and accelerated stomata movement
OsGI	Os01g0182600	LOC_Os01g08700	stress response	Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.	In addition, qRT-PCR and microarray analysis revealed that the transcript abundance of some osmotic stress response genes, such as OsDREB1E, OsAP37, OsAP59, OsLIP9, OsLEA3, OsRAB16A, and OsSalT, was significantly higher in osgi than in WT plants, suggesting that OsGI might be a negative regulator in the osmotic stress response in rice
OsGI	Os01g0182600	LOC_Os01g08700	sucrose	Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.	Results showed that mutation of OsGI conferred tolerance to osmotic stress generated by polyethylene glycol (PEG), increased proline and sucrose contents, and accelerated stomata movement
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	In addition, expression of the Hd3a and Rice Flowering-locus T 1 (RFT1) florigen genes was up-regulated in leaves of the Hd1 Ehd1 line at the time of the floral transition
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes)
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Hd3a and RFT1 are essential for flowering in rice	RICE FLOWERING LOCUS T 1 (RFT1/FT-L3) is the closest homologue of Heading date 3a (Hd3a), which is thought to encode a mobile flowering signal and promote floral transition under short-day (SD) conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Hd3a and RFT1 are essential for flowering in rice	Although RFT1 RNAi plants flowered normally, double RFT1-Hd3a RNAi plants did not flower up to 300 days after sowing (DAS), indicating that Hd3a and RFT1 are essential for flowering in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Hd3a and RFT1 are essential for flowering in rice	RFT1 expression was very low in wild-type plants, but there was a marked increase in RFT1 expression by 70 DAS in Hd3a RNAi plants, which flowered 90 DAS
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Hd3a and RFT1 are essential for flowering in rice	Hd3a and RFT1 are essential for flowering in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	heading date	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	We show here that RICE FLOWERING LOCUS T 1 (RFT1), the closest homolog to Heading date 3a (Hd3a), is a major floral activator under LD conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	shoot apical meristem	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	An RFT1:GFP fusion protein localized in the shoot apical meristem (SAM) under LD conditions, suggesting that RFT1 is a florigen gene in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	By regulating Ehd1, RFT1, and Hd3a, Ghd8 delayed flowering under long-day conditions, but promoted flowering under short-day conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	To assign the position of Ehd2 within the flowering pathway of rice, we compared transcript levels of previously isolated flowering-time genes, such as Ehd1, a member of the unique pathway, Hd3a, and Rice FT-like1 (RFT1; rice florigens), between the wild-type plants and the ehd2 mutants
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1	Severely reduced expression of these genes in ehd2 under both short- and long-day conditions suggests that Ehd2 acts as a flowering promoter mainly by up-regulating Ehd1 and by up-regulating the downstream Hd3a and RFT1 genes in the unique genetic network of photoperiodic flowering in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	heading date	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	The Early heading date 1 (Ehd1) which promotes the RFT1, was up-regulated by DTH3 in both LD and SD conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	meristem	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	An RFT1:GFP fusion protein localized in the shoot apical meristem (SAM) under LD conditions, suggesting that RFT1 is a florigen gene in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	meristem	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	A rice ortholog of Arabidopsis APETALA1, OsMADS14, was expressed in the floral meristem in wild-type but not in RFT1 RNAi plants, suggesting that OsMADS14 is activated by RFT1 protein in the SAM after the transition to flowering
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	heading date	Hd3a and RFT1 are essential for flowering in rice	RICE FLOWERING LOCUS T 1 (RFT1/FT-L3) is the closest homologue of Heading date 3a (Hd3a), which is thought to encode a mobile flowering signal and promote floral transition under short-day (SD) conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	We show here that RICE FLOWERING LOCUS T 1 (RFT1), the closest homolog to Heading date 3a (Hd3a), is a major floral activator under LD conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	Among these regulators, Ehd1, a rice-specific floral inducer, integrates multiple pathways to regulate RFT1, leading to flowering under appropriate photoperiod conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	A rice ortholog of Arabidopsis APETALA1, OsMADS14, was expressed in the floral meristem in wild-type but not in RFT1 RNAi plants, suggesting that OsMADS14 is activated by RFT1 protein in the SAM after the transition to flowering
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	heading date	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod	OsId1 regulates the expression of Ehd1 (Early heading date 1) and its downstream genes, including Hd3a (a rice ortholog of FT) and RFT1 (Rice Flowering Locus T1), under both SD and LD conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	This indicates that LHD1 may delay flowering by repressing the expression of Ehd1, Hd3a and RFT1 under long-day conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	shoot	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	An RFT1:GFP fusion protein localized in the shoot apical meristem (SAM) under LD conditions, suggesting that RFT1 is a florigen gene in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)	We also found that LHD1 could down-regulate the expression of several floral transition activators such as Ehd1, Hd3a and RFT1 under long-day conditions, but not under short-day conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral meristem	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	A rice ortholog of Arabidopsis APETALA1, OsMADS14, was expressed in the floral meristem in wild-type but not in RFT1 RNAi plants, suggesting that OsMADS14 is activated by RFT1 protein in the SAM after the transition to flowering
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flowering time	Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice	Furthermore, SNPs in the regulatory region of RFT1 and the E105K substitution in 1,397 accessions show strong linkage disequilibrium with a flowering time-associated SNP
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flowering time	Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice	These findings indicate that natural mutations in RFT1 provide flowering time divergence under long-day conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral	Hd3a and RFT1 are essential for flowering in rice	RICE FLOWERING LOCUS T 1 (RFT1/FT-L3) is the closest homologue of Heading date 3a (Hd3a), which is thought to encode a mobile flowering signal and promote floral transition under short-day (SD) conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral	Hd3a and RFT1 are essential for flowering in rice	These results indicate that Hd3a and RFT1 act as floral activators under SD conditions, and that RFT1 expression is partly regulated by chromatin modification
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	This suggests that the divergent functions of paralogs RFT1 and Hd3a, and of MADS50 and MADS51, are in part due to differential H3K36me2/3 deposition, which also correlates with higher expression levels of MADS50 and RFT1 in flowering promotion in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	We show here that RICE FLOWERING LOCUS T 1 (RFT1), the closest homolog to Heading date 3a (Hd3a), is a major floral activator under LD conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	Furthermore, mutants in OsMADS50, a rice ortholog of Arabidopsis SUPPRESOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1) did not flower up to 300 days after sowing under LD conditions, indicating that OsMADS50, which acts upstream of RFT1, promotes flowering under LD conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	We propose that both positive (OsMADS50 and Ehd1) and negative (Hd1, phyB and Ghd7) regulators of RFT1 form a gene network that regulates LD flowering in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	Among these regulators, Ehd1, a rice-specific floral inducer, integrates multiple pathways to regulate RFT1, leading to flowering under appropriate photoperiod conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	A rice ortholog of Arabidopsis APETALA1, OsMADS14, was expressed in the floral meristem in wild-type but not in RFT1 RNAi plants, suggesting that OsMADS14 is activated by RFT1 protein in the SAM after the transition to flowering
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	heading date	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes)
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod	OsId1 regulates the expression of Ehd1 (Early heading date 1) and its downstream genes, including Hd3a (a rice ortholog of FT) and RFT1 (Rice Flowering Locus T1), under both SD and LD conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice	Here, we demonstrate that functional defects in the florigen gene RFT1 are the main cause of late flowering in an indica cultivar, Nona Bokra
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice	Mapping and complementation studies revealed that sequence polymorphisms in the RFT1 regulatory and coding regions are likely to cause late flowering under long-day conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice	Sequencing of the RFT1 region in rice accessions from a global collection showed that the E105K mutation is found only in indica, and indicated a strong association between the RFT1 haplotype and extremely late flowering in a functional Hd1 background
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice	Furthermore, SNPs in the regulatory region of RFT1 and the E105K substitution in 1,397 accessions show strong linkage disequilibrium with a flowering time-associated SNP
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice	These findings indicate that natural mutations in RFT1 provide flowering time divergence under long-day conditions
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	flower	Flowering time genes Heading date 1 and Early heading date 1 together control panicle development in rice	In addition, expression of the Hd3a and Rice Flowering-locus T 1 (RFT1) florigen genes was up-regulated in leaves of the Hd1 Ehd1 line at the time of the floral transition
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	growth	Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.	The RFT1 (ZS97) allele was shown to delay heading and increase plant height, grain weight, grain number and grain yield, indicating that RFT1 plays an important role in the growth and development of rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	grain	Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.	The RFT1 (ZS97) allele was shown to delay heading and increase plant height, grain weight, grain number and grain yield, indicating that RFT1 plays an important role in the growth and development of rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	development	Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.	The RFT1 (ZS97) allele was shown to delay heading and increase plant height, grain weight, grain number and grain yield, indicating that RFT1 plays an important role in the growth and development of rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	grain number	Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.	The RFT1 (ZS97) allele was shown to delay heading and increase plant height, grain weight, grain number and grain yield, indicating that RFT1 plays an important role in the growth and development of rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	grain yield	Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.	The RFT1 (ZS97) allele was shown to delay heading and increase plant height, grain weight, grain number and grain yield, indicating that RFT1 plays an important role in the growth and development of rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	plant height	Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.	The RFT1 (ZS97) allele was shown to delay heading and increase plant height, grain weight, grain number and grain yield, indicating that RFT1 plays an important role in the growth and development of rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	grain weight	Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.	The RFT1 (ZS97) allele was shown to delay heading and increase plant height, grain weight, grain number and grain yield, indicating that RFT1 plays an important role in the growth and development of rice
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	development	Overexpression of RICE FLOWERING LOCUS T 1 (RFT1) Induces Extremely Early Flowering in Rice.	To further our study of RFT1 , we overexpressed the gene and examined the expression patterns of major regulatory genes during floral transition and inflorescence development
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	development	Overexpression of RICE FLOWERING LOCUS T 1 (RFT1) Induces Extremely Early Flowering in Rice.	This indicated that RFT1 promotes the expression of major regulatory genes that are important for inflorescence development
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral	Overexpression of RICE FLOWERING LOCUS T 1 (RFT1) Induces Extremely Early Flowering in Rice.	To further our study of RFT1 , we overexpressed the gene and examined the expression patterns of major regulatory genes during floral transition and inflorescence development
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	floral	Overexpression of RICE FLOWERING LOCUS T 1 (RFT1) Induces Extremely Early Flowering in Rice.	RFT1 overexpression also induced SEPALLATA (SEP)-clade genes OsMADS1 , OsMADS5 , and OsMADS7 in the greening calli before floral transition occurred
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	inflorescence	Overexpression of RICE FLOWERING LOCUS T 1 (RFT1) Induces Extremely Early Flowering in Rice.	To further our study of RFT1 , we overexpressed the gene and examined the expression patterns of major regulatory genes during floral transition and inflorescence development
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	inflorescence	Overexpression of RICE FLOWERING LOCUS T 1 (RFT1) Induces Extremely Early Flowering in Rice.	This indicated that RFT1 promotes the expression of major regulatory genes that are important for inflorescence development
OsGI-Hd1-Hd3a|RFT1	Os06g0157500	LOC_Os06g06300	grain	Pleiotropic Effects of Rice Florigen Gene RFT1 on the Amino Acid Content of Unmilled Rice.	Here, we reported that rice florigen gene RFT1 plays an important role in controlling amino acid contents of rice grain
OsGINT1	Os05g0540000	LOC_Os05g46260	seedling growth	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1 (GINT1) Is a GlcNAc-Containing Glycosylinositol Phosphorylceramide Glycosyltransferase.	However, in rice, where GlcN(Ac) containing GIPCs are the major GIPC subgroup in vegetative tissue, loss of GINT1 was seedling lethal.
OsGIRL1	Os02g0215900	LOC_Os02g12440	abiotic stress	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	OsGIRL1 was induced on exposure to abiotic stresses such as salt, osmotic, and heat, salicylic acid (SA), and abscisic acid (ABA), but exhibited downregulation in response to jasmonic acid (JA) treatment
OsGIRL1	Os02g0215900	LOC_Os02g12440	salt	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	The biological function of OsGIRL1 was investigated via heterologous overexpression of this gene in Arabidopsis plants subjected to gamma-ray irradiation, salt stress, osmotic stress, and heat stress
OsGIRL1	Os02g0215900	LOC_Os02g12440	salicylic acid	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	OsGIRL1 was induced on exposure to abiotic stresses such as salt, osmotic, and heat, salicylic acid (SA), and abscisic acid (ABA), but exhibited downregulation in response to jasmonic acid (JA) treatment
OsGIRL1	Os02g0215900	LOC_Os02g12440	salt stress	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	The biological function of OsGIRL1 was investigated via heterologous overexpression of this gene in Arabidopsis plants subjected to gamma-ray irradiation, salt stress, osmotic stress, and heat stress
OsGIRL1	Os02g0215900	LOC_Os02g12440	stress	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	The biological function of OsGIRL1 was investigated via heterologous overexpression of this gene in Arabidopsis plants subjected to gamma-ray irradiation, salt stress, osmotic stress, and heat stress
OsGIRL1	Os02g0215900	LOC_Os02g12440	jasmonic	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	OsGIRL1 was induced on exposure to abiotic stresses such as salt, osmotic, and heat, salicylic acid (SA), and abscisic acid (ABA), but exhibited downregulation in response to jasmonic acid (JA) treatment
OsGIRL1	Os02g0215900	LOC_Os02g12440	jasmonic acid	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	OsGIRL1 was induced on exposure to abiotic stresses such as salt, osmotic, and heat, salicylic acid (SA), and abscisic acid (ABA), but exhibited downregulation in response to jasmonic acid (JA) treatment
OsGIRL1	Os02g0215900	LOC_Os02g12440	plasma membrane	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	The OsGIRL1 protein was clearly localized at the plasma membrane
OsGIRL1	Os02g0215900	LOC_Os02g12440	biotic stress	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	OsGIRL1 was induced on exposure to abiotic stresses such as salt, osmotic, and heat, salicylic acid (SA), and abscisic acid (ABA), but exhibited downregulation in response to jasmonic acid (JA) treatment
OsGIRL1	Os02g0215900	LOC_Os02g12440	abscisic acid	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	OsGIRL1 was induced on exposure to abiotic stresses such as salt, osmotic, and heat, salicylic acid (SA), and abscisic acid (ABA), but exhibited downregulation in response to jasmonic acid (JA) treatment
OsGL1-1|WSL2	Os09g0426800	LOC_Os09g25850	drought	Rice OsGL1-1 is involved in leaf cuticular wax and cuticle membrane	Compared to the wild-type, the osgl1-1 mutant showed decreased cuticular wax deposition, thinner cuticular membrane, decreased chlorophyll leaching, increased rate of water loss, and enhanced sensitivity to drought
OsGL1-1|WSL2	Os09g0426800	LOC_Os09g25850	leaf	Rice OsGL1-1 is involved in leaf cuticular wax and cuticle membrane	In the present study, we characterized a rice leaf wax-deficient mutant osgl1-1 derived from a spontaneous mutation, which exhibited a wax-deficient and highly hydrophilic leaf phenotype
OsGL1-1|WSL2	Os09g0426800	LOC_Os09g25850	leaf	Rice OsGL1-1 is involved in leaf cuticular wax and cuticle membrane	Rice OsGL1-1 is involved in leaf cuticular wax and cuticle membrane
OsGL1-1|WSL2	Os09g0426800	LOC_Os09g25850	cuticle	Rice OsGL1-1 is involved in leaf cuticular wax and cuticle membrane	Rice OsGL1-1 is involved in leaf cuticular wax and cuticle membrane
OsGL1-3	Os06g0653000	LOC_Os06g44300	leaf	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.	While the RNAi knockdown mutant of OsGL1-3 exhibited no significant difference in plant height, but less wax crystallization and decreased total cuticular wax accumulation on leaf surface
OsGL1-3	Os06g0653000	LOC_Os06g44300	root	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.	OsGL1-3 gene was ubiquitously expressed at different level in rice plants except root and its expression was up-regulated under ABA and PEG treatments
OsGL1-3	Os06g0653000	LOC_Os06g44300	seedling	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.	Overexpression of OsGL1-3 decreased chlorophyll leaching and water loss rate whereas increased tolerance to water deficit at both seedling and late-tillering stages, suggesting an important role of OsGL1-3 in drought tolerance
OsGL1-3	Os06g0653000	LOC_Os06g44300	drought	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.	Overexpression of OsGL1-3 decreased chlorophyll leaching and water loss rate whereas increased tolerance to water deficit at both seedling and late-tillering stages, suggesting an important role of OsGL1-3 in drought tolerance
OsGL1-3	Os06g0653000	LOC_Os06g44300	tolerance	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.
OsGL1-3	Os06g0653000	LOC_Os06g44300	tolerance	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.	Overexpression of OsGL1-3 decreased chlorophyll leaching and water loss rate whereas increased tolerance to water deficit at both seedling and late-tillering stages, suggesting an important role of OsGL1-3 in drought tolerance
OsGL1-3	Os06g0653000	LOC_Os06g44300	ABA	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.	OsGL1-3 gene was ubiquitously expressed at different level in rice plants except root and its expression was up-regulated under ABA and PEG treatments
OsGL1-6	Os02g0814200	LOC_Os02g56920	drought resistance	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	We propose that OsGL1-6 is involved in the accumulation of leaf cuticular wax and directly impacts drought resistance in rice
OsGL1-6	Os02g0814200	LOC_Os02g56920	drought resistance	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance
OsGL1-6	Os02g0814200	LOC_Os02g56920	drought	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	These OsGL1-6 antisense-RNA transgenic plants showed droopy leaves at the booting stage, significantly decreased leaf cuticular wax deposition, thinner cuticle membrane, increased chlorophyll leaching and water loss rates, and enhanced drought sensitivity
OsGL1-6	Os02g0814200	LOC_Os02g56920	drought	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	We propose that OsGL1-6 is involved in the accumulation of leaf cuticular wax and directly impacts drought resistance in rice
OsGL1-6	Os02g0814200	LOC_Os02g56920	drought	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance
OsGL1-6	Os02g0814200	LOC_Os02g56920	leaf	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	These OsGL1-6 antisense-RNA transgenic plants showed droopy leaves at the booting stage, significantly decreased leaf cuticular wax deposition, thinner cuticle membrane, increased chlorophyll leaching and water loss rates, and enhanced drought sensitivity
OsGL1-6	Os02g0814200	LOC_Os02g56920	leaf	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	The OsGL1-6 gene was constitutively expressed in all examined organs and was very highly expressed in leaf epidermal cells and vascular bundles
OsGL1-6	Os02g0814200	LOC_Os02g56920	leaf	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	Qualitative and quantitative analysis of the wax composition using gas chromatography-mass spectrometry revealed a significantly reduced total cuticular wax load on the leaf blades of the OsGL1-6 antisense-RNA transgenic plants as well as markedly decreased alkane and aldehyde contents
OsGL1-6	Os02g0814200	LOC_Os02g56920	leaf	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	We propose that OsGL1-6 is involved in the accumulation of leaf cuticular wax and directly impacts drought resistance in rice
OsGL1-6	Os02g0814200	LOC_Os02g56920	leaf	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance
OsGL1-6	Os02g0814200	LOC_Os02g56920	vascular bundle	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	The OsGL1-6 gene was constitutively expressed in all examined organs and was very highly expressed in leaf epidermal cells and vascular bundles
OsGL1-6	Os02g0814200	LOC_Os02g56920	cuticle	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance	These OsGL1-6 antisense-RNA transgenic plants showed droopy leaves at the booting stage, significantly decreased leaf cuticular wax deposition, thinner cuticle membrane, increased chlorophyll leaching and water loss rates, and enhanced drought sensitivity
OsGL2	Os01g0760800	LOC_Os01g55549	root	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	However, trichome and root hair formation in transgenic rice plants overexpressing OsTCL1 remained largely unchanged, and elevated expression of OsGL2 was observed in the transgenic rice plants, indicating that rice may use different mechanisms to regulate trichome formation
OsGL2	Os01g0760800	LOC_Os01g55549	root hair	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	However, trichome and root hair formation in transgenic rice plants overexpressing OsTCL1 remained largely unchanged, and elevated expression of OsGL2 was observed in the transgenic rice plants, indicating that rice may use different mechanisms to regulate trichome formation
OsglHAT1|GW6a	Os06g0650300	LOC_Os06g44100	spikelet	Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice.	Elevated OsglHAT1 expression enhances grain weight and yield by enlarging spikelet hulls via increasing cell number and accelerating grain filling, and increases global acetylation levels of histone H4
OsglHAT1|GW6a	Os06g0650300	LOC_Os06g44100	grain	Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice.	Elevated OsglHAT1 expression enhances grain weight and yield by enlarging spikelet hulls via increasing cell number and accelerating grain filling, and increases global acetylation levels of histone H4
OsglHAT1|GW6a	Os06g0650300	LOC_Os06g44100	grain	Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice.	Despite its positive agronomical effects on grain weight, yield, and plant biomass, the rare allele elevating OsglHAT1 expression has so far escaped human selection
OsglHAT1|GW6a	Os06g0650300	LOC_Os06g44100	yield	Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice.	Elevated OsglHAT1 expression enhances grain weight and yield by enlarging spikelet hulls via increasing cell number and accelerating grain filling, and increases global acetylation levels of histone H4
OsGLIP1	Os06g0129600	LOC_Os06g03900|LOC_Os06g03890	leaf	GDSL lipases modulate immunity through lipid homeostasis in rice.	OsGLIP1 was mainly expressed in leaf and leaf sheath, while OsGLIP2 showed high expression in elongating internodes
OsGLIP1	Os06g0129600	LOC_Os06g03900|LOC_Os06g03890	resistance	GDSL lipases modulate immunity through lipid homeostasis in rice.	Simultaneous down-regulation of OsGLIP1 and OsGLIP2 increased plant resistance to both bacterial and fungal pathogens, whereas disease resistance in OsGLIP1 and OsGLIP2 overexpression plants was significantly compromised, suggesting that both genes act as negative regulators of disease resistance
OsGLIP1	Os06g0129600	LOC_Os06g03900|LOC_Os06g03890	defense	GDSL lipases modulate immunity through lipid homeostasis in rice.	Taken together, our study indicates that OsGLIP1 and OsGLIP2 negatively regulate rice defense by modulating lipid metabolism, thus providing new insights into the function of lipids in plant immunity
OsGLIP1	Os06g0129600	LOC_Os06g03900|LOC_Os06g03890	disease	GDSL lipases modulate immunity through lipid homeostasis in rice.	Simultaneous down-regulation of OsGLIP1 and OsGLIP2 increased plant resistance to both bacterial and fungal pathogens, whereas disease resistance in OsGLIP1 and OsGLIP2 overexpression plants was significantly compromised, suggesting that both genes act as negative regulators of disease resistance
OsGLIP1	Os06g0129600	LOC_Os06g03900|LOC_Os06g03890	salicylic acid	GDSL lipases modulate immunity through lipid homeostasis in rice.	Expression of OsGLIP1 and OsGLIP2 was suppressed by pathogen infection and salicylic acid (SA) treatment
OsGLIP1	Os06g0129600	LOC_Os06g03900|LOC_Os06g03890	disease resistance	GDSL lipases modulate immunity through lipid homeostasis in rice.	Simultaneous down-regulation of OsGLIP1 and OsGLIP2 increased plant resistance to both bacterial and fungal pathogens, whereas disease resistance in OsGLIP1 and OsGLIP2 overexpression plants was significantly compromised, suggesting that both genes act as negative regulators of disease resistance
OsGLIP1	Os06g0129600	LOC_Os06g03900|LOC_Os06g03890	immunity	GDSL lipases modulate immunity through lipid homeostasis in rice.	Taken together, our study indicates that OsGLIP1 and OsGLIP2 negatively regulate rice defense by modulating lipid metabolism, thus providing new insights into the function of lipids in plant immunity
OsGLIP1	Os06g0129600	LOC_Os06g03900|LOC_Os06g03890	immune response	GDSL lipases modulate immunity through lipid homeostasis in rice.	Here, we functionally identified two GDSL lipases, OsGLIP1 and OsGLIP2, in rice immune responses
OsGLIP1	Os06g0129600	LOC_Os06g03900|LOC_Os06g03890	pathogen	GDSL lipases modulate immunity through lipid homeostasis in rice.	Expression of OsGLIP1 and OsGLIP2 was suppressed by pathogen infection and salicylic acid (SA) treatment
OsGLIP2	Os06g0156700	LOC_Os06g06260	leaf	GDSL lipases modulate immunity through lipid homeostasis in rice.	OsGLIP1 was mainly expressed in leaf and leaf sheath, while OsGLIP2 showed high expression in elongating internodes
OsGLIP2	Os06g0156700	LOC_Os06g06260	resistance	GDSL lipases modulate immunity through lipid homeostasis in rice.	Simultaneous down-regulation of OsGLIP1 and OsGLIP2 increased plant resistance to both bacterial and fungal pathogens, whereas disease resistance in OsGLIP1 and OsGLIP2 overexpression plants was significantly compromised, suggesting that both genes act as negative regulators of disease resistance
OsGLIP2	Os06g0156700	LOC_Os06g06260	defense	GDSL lipases modulate immunity through lipid homeostasis in rice.	Taken together, our study indicates that OsGLIP1 and OsGLIP2 negatively regulate rice defense by modulating lipid metabolism, thus providing new insights into the function of lipids in plant immunity
OsGLIP2	Os06g0156700	LOC_Os06g06260	disease	GDSL lipases modulate immunity through lipid homeostasis in rice.	Simultaneous down-regulation of OsGLIP1 and OsGLIP2 increased plant resistance to both bacterial and fungal pathogens, whereas disease resistance in OsGLIP1 and OsGLIP2 overexpression plants was significantly compromised, suggesting that both genes act as negative regulators of disease resistance
OsGLIP2	Os06g0156700	LOC_Os06g06260	salicylic acid	GDSL lipases modulate immunity through lipid homeostasis in rice.	Expression of OsGLIP1 and OsGLIP2 was suppressed by pathogen infection and salicylic acid (SA) treatment
OsGLIP2	Os06g0156700	LOC_Os06g06260	disease resistance	GDSL lipases modulate immunity through lipid homeostasis in rice.	Simultaneous down-regulation of OsGLIP1 and OsGLIP2 increased plant resistance to both bacterial and fungal pathogens, whereas disease resistance in OsGLIP1 and OsGLIP2 overexpression plants was significantly compromised, suggesting that both genes act as negative regulators of disease resistance
OsGLIP2	Os06g0156700	LOC_Os06g06260	immunity	GDSL lipases modulate immunity through lipid homeostasis in rice.	Taken together, our study indicates that OsGLIP1 and OsGLIP2 negatively regulate rice defense by modulating lipid metabolism, thus providing new insights into the function of lipids in plant immunity
OsGLIP2	Os06g0156700	LOC_Os06g06260	pathogen	GDSL lipases modulate immunity through lipid homeostasis in rice.	Expression of OsGLIP1 and OsGLIP2 was suppressed by pathogen infection and salicylic acid (SA) treatment
OsGLK1	Os06g0348800	LOC_Os06g24070	chloroplast	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	Using rice expression-microarray and northern blot analyses, we found that a large number of nucleus-encoded genes involved in chloroplast functions were highly expressed and transcripts of plastid-encoded genes, psaA, psbA and rbcL, increased in the OsGLK1-FOX calli
OsGLK1	Os06g0348800	LOC_Os06g24070	chloroplast	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	Transmission electron microscopy showed the existence of differentiated chloroplasts with grana stacks in OsGLK1-FOX calli cells
OsGLK1	Os06g0348800	LOC_Os06g24070	chloroplast	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	Furthermore, we found developed chloroplasts in vascular bundle and bundle sheath cells of coleoptiles and leaves from OsGLK1-FOX seedlings
OsGLK1	Os06g0348800	LOC_Os06g24070	chloroplast	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	The OsGLK1-FOX calli exhibited high photosynthetic activity and were able to grow on sucrose-depleted media, indicating that developed chloroplasts in OsGLK1-FOX rice calli are functional and active
OsGLK1	Os06g0348800	LOC_Os06g24070	chloroplast	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	These results strongly suggest that OsGLK1 regulates chloroplast development under the control of light and phytohormones, and that it is a key regulator of chloroplast development
OsGLK1	Os06g0348800	LOC_Os06g24070	chloroplast	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells
OsGLK1	Os06g0348800	LOC_Os06g24070	transcription factor	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	In both lines, OsGLK1 cDNA encoding a GARP transcription factor was ectopically overexpressed
OsGLK1	Os06g0348800	LOC_Os06g24070	transcription factor	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells
OsGLK1	Os06g0348800	LOC_Os06g24070	seedling	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	Furthermore, we found developed chloroplasts in vascular bundle and bundle sheath cells of coleoptiles and leaves from OsGLK1-FOX seedlings
OsGLK1	Os06g0348800	LOC_Os06g24070	phytohormone	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	These results strongly suggest that OsGLK1 regulates chloroplast development under the control of light and phytohormones, and that it is a key regulator of chloroplast development
OsGLK1	Os06g0348800	LOC_Os06g24070	vascular bundle	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	Furthermore, we found developed chloroplasts in vascular bundle and bundle sheath cells of coleoptiles and leaves from OsGLK1-FOX seedlings
OsGLK1	Os06g0348800	LOC_Os06g24070	sheath	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells	Furthermore, we found developed chloroplasts in vascular bundle and bundle sheath cells of coleoptiles and leaves from OsGLK1-FOX seedlings
OsGLK1	Os06g0348800	LOC_Os06g24070	endosperm	Rice carotenoid biofortification and yield improvement conferred by endosperm-specific overexpression of OsGLK1.	 Our results revealed that OsGLK1 confers favorable characters in rice endosperm and could help to refine strategies for the carotenoid and other plastid-synthesized micronutrient fortification in bioengineered plants
OsGLK1	Os06g0348800	LOC_Os06g24070	resistance	Golden 2-like transcription factor contributes to the major QTL against rice black-streaked dwarf virus disease.	A major resistance QTL was identified on chromosome 6 in rice variety Wuke; both overexpression and knockdown experiments confirmed that OsGLK1 is the candidate gene for association with Rice black-streaked dwarf virus disease
OsGLK1	Os06g0348800	LOC_Os06g24070	resistance	Golden 2-like transcription factor contributes to the major QTL against rice black-streaked dwarf virus disease.	 Furthermore, OsGLK1 knockdown rice lines were investigated and the resistance ability was significantly declined without this gene compared to the wild type
OsGLK1	Os06g0348800	LOC_Os06g24070	resistance	Golden 2-like transcription factor contributes to the major QTL against rice black-streaked dwarf virus disease.	 Taken together, both overexpression and knockdown experiments strongly suggested that OsGLK1 plays an important role for RBSDV resistance and contributes to the major QTL
OsGLK1	Os06g0348800	LOC_Os06g24070	resistance	Golden 2-like transcription factor contributes to the major QTL against rice black-streaked dwarf virus disease.	 The study paves the way for elucidating the molecular mechanism underlying RBSDVD resistance and the molecular markers associated with OsGLK1 may be used for marker-assisted selection
OsGLK1	Os06g0348800	LOC_Os06g24070	disease	Golden 2-like transcription factor contributes to the major QTL against rice black-streaked dwarf virus disease.	A major resistance QTL was identified on chromosome 6 in rice variety Wuke; both overexpression and knockdown experiments confirmed that OsGLK1 is the candidate gene for association with Rice black-streaked dwarf virus disease
OsGLK1	Os06g0348800	LOC_Os06g24070	dwarf	Golden 2-like transcription factor contributes to the major QTL against rice black-streaked dwarf virus disease.	A major resistance QTL was identified on chromosome 6 in rice variety Wuke; both overexpression and knockdown experiments confirmed that OsGLK1 is the candidate gene for association with Rice black-streaked dwarf virus disease
OsGLN1	Os01g0946700	LOC_Os01g71830	drought	Molecular cloning, characterization and in vitro expression of a novel endo-1,3-β-glucanase up-regulated by ABA and drought stress in rice (Oryza sativa L.)	Northern blot analysis revealed that the expression of OsGLN1 is up-regulated by drought stress and abscisic acid (ABA) treatment and the accumulation of OsGLN1 transcript is more in the roots of rice seedlings
OsGLN1	Os01g0946700	LOC_Os01g71830	drought	Molecular cloning, characterization and in vitro expression of a novel endo-1,3-β-glucanase up-regulated by ABA and drought stress in rice (Oryza sativa L.)	These results clearly indicated that the endo-1,3-β-glucanase encoded by OsGLN1 plays an important role associated with plant defence against abiotic and biotic stresses particularly for drought and fungal pathogen in rice seedlings
OsGLN1	Os01g0946700	LOC_Os01g71830	root	Molecular cloning, characterization and in vitro expression of a novel endo-1,3-β-glucanase up-regulated by ABA and drought stress in rice (Oryza sativa L.)	Northern blot analysis revealed that the expression of OsGLN1 is up-regulated by drought stress and abscisic acid (ABA) treatment and the accumulation of OsGLN1 transcript is more in the roots of rice seedlings
OsGLN1	Os01g0946700	LOC_Os01g71830	biotic stress	Molecular cloning, characterization and in vitro expression of a novel endo-1,3-β-glucanase up-regulated by ABA and drought stress in rice (Oryza sativa L.)	These results clearly indicated that the endo-1,3-β-glucanase encoded by OsGLN1 plays an important role associated with plant defence against abiotic and biotic stresses particularly for drought and fungal pathogen in rice seedlings
OsGLN1	Os01g0946700	LOC_Os01g71830	seedling	Molecular cloning, characterization and in vitro expression of a novel endo-1,3-β-glucanase up-regulated by ABA and drought stress in rice (Oryza sativa L.)	Northern blot analysis revealed that the expression of OsGLN1 is up-regulated by drought stress and abscisic acid (ABA) treatment and the accumulation of OsGLN1 transcript is more in the roots of rice seedlings
OsGLN1	Os01g0946700	LOC_Os01g71830	seedling	Molecular cloning, characterization and in vitro expression of a novel endo-1,3-β-glucanase up-regulated by ABA and drought stress in rice (Oryza sativa L.)	These results clearly indicated that the endo-1,3-β-glucanase encoded by OsGLN1 plays an important role associated with plant defence against abiotic and biotic stresses particularly for drought and fungal pathogen in rice seedlings
OsGLN1	Os01g0946700	LOC_Os01g71830	cell wall	Molecular cloning, characterization and in vitro expression of a novel endo-1,3-β-glucanase up-regulated by ABA and drought stress in rice (Oryza sativa L.)	The GST-OsGLN1 recombinant protein rapidly hydrolyzed the cell wall β-glucans of rice fungal pathogen, Pyricularia oryzae, other than typical substrates for endo-1,3-β-glucanase
OsGLN2	Os01g0944700	LOC_Os01g71670	root	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	Northern analysis with a 3'-UTR gene-specific probe revealed that OsGLN2 is expressed exclusively in the paleae and lemmas during flowering, and no expression of OsGLN2 was detected in other tissues such as leaf blades, leaf sheaths, stems, nodes and roots in mature rice plants
OsGLN2	Os01g0944700	LOC_Os01g71670	endosperm	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	The OsGLN2 gene is also expressed in germinating seeds, where its expression is predominant in endosperms rather than embryos
OsGLN2	Os01g0944700	LOC_Os01g71670	flower	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	We report here the isolation and characterization of a new endo-1,3-beta-glucanase (1,3-beta-GLU) cDNA, OsGLN2, that is expressed both in flowers and in germinating seeds of rice (Oryza sativa L
OsGLN2	Os01g0944700	LOC_Os01g71670	flower	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	Northern analysis with a 3'-UTR gene-specific probe revealed that OsGLN2 is expressed exclusively in the paleae and lemmas during flowering, and no expression of OsGLN2 was detected in other tissues such as leaf blades, leaf sheaths, stems, nodes and roots in mature rice plants
OsGLN2	Os01g0944700	LOC_Os01g71670	flower	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	This is the first report, to our knowledge, that OsGLN2 encodes a 1,3-beta-GLU and is expressed specifically in paleae and lemmas during flowering and in germinating seeds, where its expression is enhanced by GA and suppressed by ABA
OsGLN2	Os01g0944700	LOC_Os01g71670	flower	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds
OsGLN2	Os01g0944700	LOC_Os01g71670	leaf	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	Northern analysis with a 3'-UTR gene-specific probe revealed that OsGLN2 is expressed exclusively in the paleae and lemmas during flowering, and no expression of OsGLN2 was detected in other tissues such as leaf blades, leaf sheaths, stems, nodes and roots in mature rice plants
OsGLN2	Os01g0944700	LOC_Os01g71670	stem	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	Northern analysis with a 3'-UTR gene-specific probe revealed that OsGLN2 is expressed exclusively in the paleae and lemmas during flowering, and no expression of OsGLN2 was detected in other tissues such as leaf blades, leaf sheaths, stems, nodes and roots in mature rice plants
OsGLN2	Os01g0944700	LOC_Os01g71670	lemma	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	Northern analysis with a 3'-UTR gene-specific probe revealed that OsGLN2 is expressed exclusively in the paleae and lemmas during flowering, and no expression of OsGLN2 was detected in other tissues such as leaf blades, leaf sheaths, stems, nodes and roots in mature rice plants
OsGLN2	Os01g0944700	LOC_Os01g71670	lemma	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	This is the first report, to our knowledge, that OsGLN2 encodes a 1,3-beta-GLU and is expressed specifically in paleae and lemmas during flowering and in germinating seeds, where its expression is enhanced by GA and suppressed by ABA
OsGLN2	Os01g0944700	LOC_Os01g71670	gibberellin	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	In de-embryonated rice half-seeds, addition of gibberellin A3 (GA) greatly enhanced expression of the OsGLN2 gene, while the GA-induced gene expression was suppressed strongly by abscisic acid (ABA)
OsGLN2	Os01g0944700	LOC_Os01g71670	ga	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	This is the first report, to our knowledge, that OsGLN2 encodes a 1,3-beta-GLU and is expressed specifically in paleae and lemmas during flowering and in germinating seeds, where its expression is enhanced by GA and suppressed by ABA
OsGLN2	Os01g0944700	LOC_Os01g71670	seed	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	We report here the isolation and characterization of a new endo-1,3-beta-glucanase (1,3-beta-GLU) cDNA, OsGLN2, that is expressed both in flowers and in germinating seeds of rice (Oryza sativa L
OsGLN2	Os01g0944700	LOC_Os01g71670	seed	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	The OsGLN2 gene is also expressed in germinating seeds, where its expression is predominant in endosperms rather than embryos
OsGLN2	Os01g0944700	LOC_Os01g71670	seed	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	In de-embryonated rice half-seeds, addition of gibberellin A3 (GA) greatly enhanced expression of the OsGLN2 gene, while the GA-induced gene expression was suppressed strongly by abscisic acid (ABA)
OsGLN2	Os01g0944700	LOC_Os01g71670	seed	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	This is the first report, to our knowledge, that OsGLN2 encodes a 1,3-beta-GLU and is expressed specifically in paleae and lemmas during flowering and in germinating seeds, where its expression is enhanced by GA and suppressed by ABA
OsGLN2	Os01g0944700	LOC_Os01g71670	seed	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds
OsGLN2	Os01g0944700	LOC_Os01g71670	palea	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	Northern analysis with a 3'-UTR gene-specific probe revealed that OsGLN2 is expressed exclusively in the paleae and lemmas during flowering, and no expression of OsGLN2 was detected in other tissues such as leaf blades, leaf sheaths, stems, nodes and roots in mature rice plants
OsGLN2	Os01g0944700	LOC_Os01g71670	palea	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	This is the first report, to our knowledge, that OsGLN2 encodes a 1,3-beta-GLU and is expressed specifically in paleae and lemmas during flowering and in germinating seeds, where its expression is enhanced by GA and suppressed by ABA
OsGLN2	Os01g0944700	LOC_Os01g71670	sheath	Cloning, characterization and expression of OsGLN2, a rice endo-1,3-beta-glucanase gene regulated developmentally in flowers and hormonally in germinating seeds	Northern analysis with a 3'-UTR gene-specific probe revealed that OsGLN2 is expressed exclusively in the paleae and lemmas during flowering, and no expression of OsGLN2 was detected in other tissues such as leaf blades, leaf sheaths, stems, nodes and roots in mature rice plants
OsGlnB	Os05g0133100	LOC_Os05g04220	sheath	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Both OsGlnB and OsNAGK1 genes were expressed in roots, leaf blades, leaf sheaths and spikelets of rice, and these two genes were coordinately expressed in leaf blades during the life span
OsGlnB	Os05g0133100	LOC_Os05g04220	chloroplast	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Transient expression of OsGlnB cDNA or OsNAGK1 cDNA fused with sGFP in rice leaf blades strongly suggested that the PII-like protein as well as OsNAGK1 protein is located in chloroplasts
OsGlnB	Os05g0133100	LOC_Os05g04220	spikelet	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Both OsGlnB and OsNAGK1 genes were expressed in roots, leaf blades, leaf sheaths and spikelets of rice, and these two genes were coordinately expressed in leaf blades during the life span
OsGlnB	Os05g0133100	LOC_Os05g04220	leaf	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Transient expression of OsGlnB cDNA or OsNAGK1 cDNA fused with sGFP in rice leaf blades strongly suggested that the PII-like protein as well as OsNAGK1 protein is located in chloroplasts
OsGlnB	Os05g0133100	LOC_Os05g04220	leaf	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Both OsGlnB and OsNAGK1 genes were expressed in roots, leaf blades, leaf sheaths and spikelets of rice, and these two genes were coordinately expressed in leaf blades during the life span
OsGlnB	Os05g0133100	LOC_Os05g04220	root	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Both OsGlnB and OsNAGK1 genes were expressed in roots, leaf blades, leaf sheaths and spikelets of rice, and these two genes were coordinately expressed in leaf blades during the life span
OsGLP1	Os08g0460000	LOC_Os08g35760	biotic stress	Transgenically expressed rice germin-like protein1 in tobacco causes hyper-accumulation of H2O2 and reinforcement of the cell wall components	The transgenic tobacco lines expressing SOD-active OsGLP1 showed tolerance against biotic and abiotic stresses mitigated by hyper-accumulating H(2)O(2) upon infection by fungal pathogen (Fusarium solani) and treatment to chemical oxidizing agent (ammonium persulfate), respectively
OsGLP1	Os08g0460000	LOC_Os08g35760	abiotic stress	Transgenically expressed rice germin-like protein1 in tobacco causes hyper-accumulation of H2O2 and reinforcement of the cell wall components	The transgenic tobacco lines expressing SOD-active OsGLP1 showed tolerance against biotic and abiotic stresses mitigated by hyper-accumulating H(2)O(2) upon infection by fungal pathogen (Fusarium solani) and treatment to chemical oxidizing agent (ammonium persulfate), respectively
OsGLP1	Os08g0460000	LOC_Os08g35760	height	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance	Our observations on the maintenance of cell dimension, cell wall-associated localization particularly in the sub-epidermal tissues and the SOD activity of OsGLP1 could explain its functional role in regulation of plant height and disease resistance in rice plant
OsGLP1	Os08g0460000	LOC_Os08g35760	cell wall	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance	Our observations on the maintenance of cell dimension, cell wall-associated localization particularly in the sub-epidermal tissues and the SOD activity of OsGLP1 could explain its functional role in regulation of plant height and disease resistance in rice plant
OsGLP1	Os08g0460000	LOC_Os08g35760	vegetative	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance	Usually, the single copy OsGLP1 gene in rice plant was found to be expressed predominantly in green vegetative tissues
OsGLP1	Os08g0460000	LOC_Os08g35760	disease resistance	Transgenically expressed rice germin-like protein1 in tobacco causes hyper-accumulation of H2O2 and reinforcement of the cell wall components	Our recent report documented that the rice germin-like protein1 (OsGLP1), being a cell wall-associated protein involves in disease resistance in rice and possesses superoxide dismutase (SOD) activity as recognized by heterologous expression in tobacco
OsGLP1	Os08g0460000	LOC_Os08g35760	disease	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance	The transgenic rice lines showed significant reduction in endogenous OsGLP1 expression due to 26nt siRNA-mediated gene silencing, displayed semi-dwarfism and were affected seriously by fungal diseases, compared to the untransformed plant
OsGLP1	Os08g0460000	LOC_Os08g35760	disease	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance	Our observations on the maintenance of cell dimension, cell wall-associated localization particularly in the sub-epidermal tissues and the SOD activity of OsGLP1 could explain its functional role in regulation of plant height and disease resistance in rice plant
OsGLP1	Os08g0460000	LOC_Os08g35760	dwarf	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance	The transgenic rice lines showed significant reduction in endogenous OsGLP1 expression due to 26nt siRNA-mediated gene silencing, displayed semi-dwarfism and were affected seriously by fungal diseases, compared to the untransformed plant
OsGLP1	Os08g0460000	LOC_Os08g35760	disease resistance	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance	Our observations on the maintenance of cell dimension, cell wall-associated localization particularly in the sub-epidermal tissues and the SOD activity of OsGLP1 could explain its functional role in regulation of plant height and disease resistance in rice plant
OsGLP1	Os08g0460000	LOC_Os08g35760	disease	Transgenically expressed rice germin-like protein1 in tobacco causes hyper-accumulation of H2O2 and reinforcement of the cell wall components	Our recent report documented that the rice germin-like protein1 (OsGLP1), being a cell wall-associated protein involves in disease resistance in rice and possesses superoxide dismutase (SOD) activity as recognized by heterologous expression in tobacco
OsGLP1	Os08g0460000	LOC_Os08g35760	cell wall	Transgenically expressed rice germin-like protein1 in tobacco causes hyper-accumulation of H2O2 and reinforcement of the cell wall components	Our recent report documented that the rice germin-like protein1 (OsGLP1), being a cell wall-associated protein involves in disease resistance in rice and possesses superoxide dismutase (SOD) activity as recognized by heterologous expression in tobacco
OsGLP1	Os08g0460000	LOC_Os08g35760	cell wall	Transgenically expressed rice germin-like protein1 in tobacco causes hyper-accumulation of H2O2 and reinforcement of the cell wall components	Our findings demonstrate that the OsGLP1 with its inherent SOD activity is responsible for hyper-accumulation of H(2)O(2) and reinforcement of the cell wall components
OsGLP2-1	Os02g0532500	LOC_Os02g32980	leaf	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Overexpression of OsGLP2-1 quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsGLP2-1	Os02g0532500	LOC_Os02g32980	resistance	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.
OsGLP2-1	Os02g0532500	LOC_Os02g32980	resistance	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	In addition to its resistance to blast and bacterial blight, OsGLP2-1 has also been reported to co-localize with a QTLs for sheath blight resistance in rice
OsGLP2-1	Os02g0532500	LOC_Os02g32980	resistance	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	These suggest that the disease resistance provided by OsGLP2-1 is quantitative and broad spectrum
OsGLP2-1	Os02g0532500	LOC_Os02g32980	resistance	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Overexpression of OsGLP2-1 quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsGLP2-1	Os02g0532500	LOC_Os02g32980	resistance	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Together, these results suggest that OsGLP2-1 functions as a positive regulator to modulate disease resistance
OsGLP2-1	Os02g0532500	LOC_Os02g32980	panicle	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Overexpression of OsGLP2-1 quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsGLP2-1	Os02g0532500	LOC_Os02g32980	sheath	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	In addition to its resistance to blast and bacterial blight, OsGLP2-1 has also been reported to co-localize with a QTLs for sheath blight resistance in rice
OsGLP2-1	Os02g0532500	LOC_Os02g32980	disease	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	These suggest that the disease resistance provided by OsGLP2-1 is quantitative and broad spectrum
OsGLP2-1	Os02g0532500	LOC_Os02g32980	disease	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Together, these results suggest that OsGLP2-1 functions as a positive regulator to modulate disease resistance
OsGLP2-1	Os02g0532500	LOC_Os02g32980	blast	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.
OsGLP2-1	Os02g0532500	LOC_Os02g32980	blast	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	In addition to its resistance to blast and bacterial blight, OsGLP2-1 has also been reported to co-localize with a QTLs for sheath blight resistance in rice
OsGLP2-1	Os02g0532500	LOC_Os02g32980	blast	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Overexpression of OsGLP2-1 quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsGLP2-1	Os02g0532500	LOC_Os02g32980	disease resistance	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	These suggest that the disease resistance provided by OsGLP2-1 is quantitative and broad spectrum
OsGLP2-1	Os02g0532500	LOC_Os02g32980	disease resistance	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Together, these results suggest that OsGLP2-1 functions as a positive regulator to modulate disease resistance
OsGLP2-1	Os02g0532500	LOC_Os02g32980	jasmonic	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Moreover, OsGLP2-1 was significantly induced by jasmonic acid (JA)
OsGLP2-1	Os02g0532500	LOC_Os02g32980	ja	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Higher endogenous level of JA was also identified in OsGLP2-1 overexpressing plants than in control plants both before and after pathogen inoculation
OsGLP2-1	Os02g0532500	LOC_Os02g32980	jasmonic acid	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Moreover, OsGLP2-1 was significantly induced by jasmonic acid (JA)
OsGLP2-1	Os02g0532500	LOC_Os02g32980	blight	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.
OsGLP2-1	Os02g0532500	LOC_Os02g32980	blight	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	In addition to its resistance to blast and bacterial blight, OsGLP2-1 has also been reported to co-localize with a QTLs for sheath blight resistance in rice
OsGLP2-1	Os02g0532500	LOC_Os02g32980	blight	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Overexpression of OsGLP2-1 quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsGLP2-1	Os02g0532500	LOC_Os02g32980	JA	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Higher endogenous level of JA was also identified in OsGLP2-1 overexpressing plants than in control plants both before and after pathogen inoculation
OsGLP2-1	Os02g0532500	LOC_Os02g32980	bacterial blight	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.
OsGLP2-1	Os02g0532500	LOC_Os02g32980	bacterial blight	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	In addition to its resistance to blast and bacterial blight, OsGLP2-1 has also been reported to co-localize with a QTLs for sheath blight resistance in rice
OsGLP2-1	Os02g0532500	LOC_Os02g32980	bacterial blight	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Overexpression of OsGLP2-1 quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsGLP2-1	Os02g0532500	LOC_Os02g32980	pathogen	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Compared with empty vector transformed (control) plants, the OsGLP2-1 overexpressing plants exhibited higher levels of H2O2 both before and after pathogen inoculation
OsGLP2-1	Os02g0532500	LOC_Os02g32980	pathogen	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Overexpression of OsGLP2-1 induced three well-characterized defense-related genes which are associated in JA-dependent pathway after pathogen infection
OsGLP2-1	Os02g0532500	LOC_Os02g32980	pathogen	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Higher endogenous level of JA was also identified in OsGLP2-1 overexpressing plants than in control plants both before and after pathogen inoculation
OsGLP2-1	Os02g0532500	LOC_Os02g32980	fungal blast	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	The germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.
OsGLP2-1	Os02g0532500	LOC_Os02g32980	transcription factor	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	We provide evidence that OsGLP2-1 is antagonistically controlled at the transcriptional level by ABA INSENSITIVE5 (ABI5) and GAMYB transcription factors
OsGLP2-1	Os02g0532500	LOC_Os02g32980	development	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	We conclude that OsGLP2-1 acts as a buffer, maintaining appropriate equilibrium for the regulation of primary dormancy during seed development in rice
OsGLP2-1	Os02g0532500	LOC_Os02g32980	seed	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	Conversely, overexpression of OsGLP2-1 driven by the OsGLP2-1 native promoter led to greater seed dormancy
OsGLP2-1	Os02g0532500	LOC_Os02g32980	seed	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	Seed scutellum-specific expression of OsGLP2-1 was increased by exogenous abscisic acid (ABA), but decreased with gibberellic acid (GA) treatment
OsGLP2-1	Os02g0532500	LOC_Os02g32980	seed	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	We conclude that OsGLP2-1 acts as a buffer, maintaining appropriate equilibrium for the regulation of primary dormancy during seed development in rice
OsGLP2-1	Os02g0532500	LOC_Os02g32980	ABA	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	We provide evidence that OsGLP2-1 is antagonistically controlled at the transcriptional level by ABA INSENSITIVE5 (ABI5) and GAMYB transcription factors
OsGLP2-1	Os02g0532500	LOC_Os02g32980	abscisic acid	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	Seed scutellum-specific expression of OsGLP2-1 was increased by exogenous abscisic acid (ABA), but decreased with gibberellic acid (GA) treatment
OsGLP2-1	Os02g0532500	LOC_Os02g32980	ABA	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	We provide evidence that OsGLP2-1 is antagonistically controlled at the transcriptional level by ABA INSENSITIVE5 (ABI5) and GAMYB transcription factors
OsGLP2-1	Os02g0532500	LOC_Os02g32980	seed development	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	We conclude that OsGLP2-1 acts as a buffer, maintaining appropriate equilibrium for the regulation of primary dormancy during seed development in rice
OsGLP2-1	Os02g0532500	LOC_Os02g32980	dormancy	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	Using artificial microRNA (miRNA) and CRISPR/CAS9 approaches, suppression of OsGLP2-1 expression in rice resulted in the release of dormancy in immature seeds
OsGLP2-1	Os02g0532500	LOC_Os02g32980	dormancy	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	Conversely, overexpression of OsGLP2-1 driven by the OsGLP2-1 native promoter led to greater seed dormancy
OsGLP2-1	Os02g0532500	LOC_Os02g32980	dormancy	Rice GERMIN-LIKE PROTEIN 2-1 Functions in Seed Dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	We conclude that OsGLP2-1 acts as a buffer, maintaining appropriate equilibrium for the regulation of primary dormancy during seed development in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	leaf	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Overexpression of OsGLP3-7 increased plant resistance to leaf blast, panicle blast, and bacterial blight, whereas disease resistance in OsGLP3-7 RNAi silenced plants was remarkably compromised, suggesting this gene is a positive regulator of disease resistance in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	resistance	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Overexpression of OsGLP3-7 increased plant resistance to leaf blast, panicle blast, and bacterial blight, whereas disease resistance in OsGLP3-7 RNAi silenced plants was remarkably compromised, suggesting this gene is a positive regulator of disease resistance in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	resistance	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Taken together, our results indicate that OsGLP3-7 positively regulates rice disease resistance by activating JA and phytoalexin metabolic pathways, thus providing novel insights into the disease resistance mechanisms conferred by GLPs in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	panicle	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Overexpression of OsGLP3-7 increased plant resistance to leaf blast, panicle blast, and bacterial blight, whereas disease resistance in OsGLP3-7 RNAi silenced plants was remarkably compromised, suggesting this gene is a positive regulator of disease resistance in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	disease	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Overexpression of OsGLP3-7 increased plant resistance to leaf blast, panicle blast, and bacterial blight, whereas disease resistance in OsGLP3-7 RNAi silenced plants was remarkably compromised, suggesting this gene is a positive regulator of disease resistance in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	disease	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Taken together, our results indicate that OsGLP3-7 positively regulates rice disease resistance by activating JA and phytoalexin metabolic pathways, thus providing novel insights into the disease resistance mechanisms conferred by GLPs in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	disease resistance	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Overexpression of OsGLP3-7 increased plant resistance to leaf blast, panicle blast, and bacterial blight, whereas disease resistance in OsGLP3-7 RNAi silenced plants was remarkably compromised, suggesting this gene is a positive regulator of disease resistance in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	disease resistance	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Taken together, our results indicate that OsGLP3-7 positively regulates rice disease resistance by activating JA and phytoalexin metabolic pathways, thus providing novel insights into the disease resistance mechanisms conferred by GLPs in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	ja	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Many genes involved in JA and phytoalexin biosynthesis were strongly induced, accompanied with elevated levels of JA and phytoalexins in OsGLP3-7-overexpressing plants, while expression of these genes was significantly suppressed and the levels of JA and phytoalexins were reduced in OsGLP3-7 RNAi plants compared with control plants, both before and after pathogen inoculation
OsGLP3-7	Os03g0804500	LOC_Os03g58980	ja	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Taken together, our results indicate that OsGLP3-7 positively regulates rice disease resistance by activating JA and phytoalexin metabolic pathways, thus providing novel insights into the disease resistance mechanisms conferred by GLPs in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	JA	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Many genes involved in JA and phytoalexin biosynthesis were strongly induced, accompanied with elevated levels of JA and phytoalexins in OsGLP3-7-overexpressing plants, while expression of these genes was significantly suppressed and the levels of JA and phytoalexins were reduced in OsGLP3-7 RNAi plants compared with control plants, both before and after pathogen inoculation
OsGLP3-7	Os03g0804500	LOC_Os03g58980	JA	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Taken together, our results indicate that OsGLP3-7 positively regulates rice disease resistance by activating JA and phytoalexin metabolic pathways, thus providing novel insights into the disease resistance mechanisms conferred by GLPs in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	bacterial blight	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Overexpression of OsGLP3-7 increased plant resistance to leaf blast, panicle blast, and bacterial blight, whereas disease resistance in OsGLP3-7 RNAi silenced plants was remarkably compromised, suggesting this gene is a positive regulator of disease resistance in rice
OsGLP3-7	Os03g0804500	LOC_Os03g58980	pathogen	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Expression of OsGLP3-7 was significantly induced by pathogen infection, jasmonic acid (JA) treatment, and hydrogen peroxide (H(2) O(2) ) treatment
OsGLP3-7	Os03g0804500	LOC_Os03g58980	pathogen	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Many genes involved in JA and phytoalexin biosynthesis were strongly induced, accompanied with elevated levels of JA and phytoalexins in OsGLP3-7-overexpressing plants, while expression of these genes was significantly suppressed and the levels of JA and phytoalexins were reduced in OsGLP3-7 RNAi plants compared with control plants, both before and after pathogen inoculation
OsGLP3-7	Os03g0804500	LOC_Os03g58980	cytoplasm	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 OsGLP3-7 was highly expressed in leaves and sublocalized in the cytoplasm
OsGLP3-7	Os03g0804500	LOC_Os03g58980	jasmonic	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.
OsGLP3-7	Os03g0804500	LOC_Os03g58980	jasmonic	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Expression of OsGLP3-7 was significantly induced by pathogen infection, jasmonic acid (JA) treatment, and hydrogen peroxide (H(2) O(2) ) treatment
OsGLP3-7	Os03g0804500	LOC_Os03g58980	jasmonic acid	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.
OsGLP3-7	Os03g0804500	LOC_Os03g58980	jasmonic acid	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Expression of OsGLP3-7 was significantly induced by pathogen infection, jasmonic acid (JA) treatment, and hydrogen peroxide (H(2) O(2) ) treatment
OsGLP3-7	Os03g0804500	LOC_Os03g58980	immune response	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.
OsGLP3-7	Os03g0804500	LOC_Os03g58980	 ja 	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Many genes involved in JA and phytoalexin biosynthesis were strongly induced, accompanied with elevated levels of JA and phytoalexins in OsGLP3-7-overexpressing plants, while expression of these genes was significantly suppressed and the levels of JA and phytoalexins were reduced in OsGLP3-7 RNAi plants compared with control plants, both before and after pathogen inoculation
OsGLP3-7	Os03g0804500	LOC_Os03g58980	 ja 	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	 Taken together, our results indicate that OsGLP3-7 positively regulates rice disease resistance by activating JA and phytoalexin metabolic pathways, thus providing novel insights into the disease resistance mechanisms conferred by GLPs in rice
OsGLR3.4	Os07g0522600	LOC_Os07g33790	growth	GLUTAMATE RECEPTOR-like gene OsGLR3.4 is required for plant growth and systemic wound signaling in rice (Oryza sativa).	GLUTAMATE RECEPTOR-like gene OsGLR3.4 is required for plant growth and systemic wound signaling in rice (Oryza sativa).
OsGLR3.4	Os07g0522600	LOC_Os07g33790	plant growth	GLUTAMATE RECEPTOR-like gene OsGLR3.4 is required for plant growth and systemic wound signaling in rice (Oryza sativa).	GLUTAMATE RECEPTOR-like gene OsGLR3.4 is required for plant growth and systemic wound signaling in rice (Oryza sativa).
OsGLU1|OsGH9A1	Os03g0329500	LOC_Os03g21210	cellulose	OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation	Mutation of OsGLU1 resulted in a reduction in cell elongation, and a decrease in cellulose content but an increase in pectin content, suggesting that OsGLU1 affects the internode elongation and cell wall components of rice plants
OsGLU1|OsGH9A1	Os03g0329500	LOC_Os03g21210	growth	OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation	These results indicate that OsGLU1 plays important roles in plant cell growth
OsGLU1|OsGH9A1	Os03g0329500	LOC_Os03g21210	brassinosteroid	OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation	Gibberellins and brassinosteroids induced OsGLU1 expression
OsGLU1|OsGH9A1	Os03g0329500	LOC_Os03g21210	cell elongation	OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation	Mutation of OsGLU1 resulted in a reduction in cell elongation, and a decrease in cellulose content but an increase in pectin content, suggesting that OsGLU1 affects the internode elongation and cell wall components of rice plants
OsGLU1|OsGH9A1	Os03g0329500	LOC_Os03g21210	gibberellin	OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation	Gibberellins and brassinosteroids induced OsGLU1 expression
OsGLU1|OsGH9A1	Os03g0329500	LOC_Os03g21210	cell wall	OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation	Mutation of OsGLU1 resulted in a reduction in cell elongation, and a decrease in cellulose content but an increase in pectin content, suggesting that OsGLU1 affects the internode elongation and cell wall components of rice plants
OsGLU1|OsGH9A1	Os03g0329500	LOC_Os03g21210	nitrate	New Insights into the Transcriptional Regulation of Genes Involved in the Nitrogen Use Efficiency under Potassium Chlorate in Rice ( Oryza sativa L.)	3, OsGLU1 and OsGLU2, between NR and NRT, coupled with the NR activity pattern in the roots, would indicate the prevalence of nitrate (NO3) transport over ammonium (NH4+) transport
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	nitrogen	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	Here, we further showed that OsGLU3 is also dispensable for nitrogen starvation induced root elongation in rice
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	meristem	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Osglu3-1 displayed less crystalline cellulose content in its root cell wall, shorter root cell length, and a slightly smaller root meristem as visualized by restricted expression of OsCYCB1,1:GUS
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	meristem	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	The fully functional OsGLU3-GFP was detected in plasma membrane, and FM4-64-labeled compartments in the root meristem and elongation zones
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	growth	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	The molecular mechanism involved in cell wall dynamics has not been well clarified, although it is quite important for organ growth
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	growth	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	We characterized a rice mutant, root growth inhibiting (rt), which is defective in root elongation
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	The enzymatic analysis of root extracts from the wild-type and rt mutant indicated that RT hydrolyzes noncrystalline amorphous cellulose
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	The cellulose content was slightly increased but the crystallinity of cellulose was decreased in the rt root
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	In addition, the hemicellulose composition was different between wild-type and rt roots
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	Based on these results, we concluded that RT is involved in the disassembly of the cell wall for cell elongation in roots as well as for root cap exfoliation from the epidermal cell layer by hydrolyzing the noncrystalline amorphous cellulose fibers of cellulose microfibrils resulting in loosening of the hemicellulose and cellulose interaction
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	Previously, we showed that OsGLU3, a beta-1,4-endoglucanase, can affect the cellulose synthesis for root elongation in rice
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell wall	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	The molecular mechanism involved in cell wall dynamics has not been well clarified, although it is quite important for organ growth
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell wall	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	Based on these results, we concluded that RT is involved in the disassembly of the cell wall for cell elongation in roots as well as for root cap exfoliation from the epidermal cell layer by hydrolyzing the noncrystalline amorphous cellulose fibers of cellulose microfibrils resulting in loosening of the hemicellulose and cellulose interaction
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	In order to identify new genes involved in root elongation in rice, we screened an ethyl methane sulfonate (EMS)-mutagenized rice library, and isolated a short root mutant, Osglu3-1
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Osglu3-1 displayed less crystalline cellulose content in its root cell wall, shorter root cell length, and a slightly smaller root meristem as visualized by restricted expression of OsCYCB1,1:GUS
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Exogenous application of glucose can suppress both the lower root cell wall cellulose content and short root phenotypes of Osglu3-1
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Consistently, OsGLU3 is ubiquitously expressed in various tissues with strong expression in root tip, lateral root, and crown root primodia
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	The fully functional OsGLU3-GFP was detected in plasma membrane, and FM4-64-labeled compartments in the root meristem and elongation zones
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	We also found that phosphate starvation, an environmental stress, altered cell wall cellulose content to modulate root elongation in a OsGLU3-dependant way
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Osglu3-1 displayed less crystalline cellulose content in its root cell wall, shorter root cell length, and a slightly smaller root meristem as visualized by restricted expression of OsCYCB1,1:GUS
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Exogenous application of glucose can suppress both the lower root cell wall cellulose content and short root phenotypes of Osglu3-1
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	We also found that phosphate starvation, an environmental stress, altered cell wall cellulose content to modulate root elongation in a OsGLU3-dependant way
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	nitrogen	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	Here, we further showed that OsGLU3 is also dispensable for nitrogen starvation induced root elongation in rice
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	nitrogen	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell wall	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Osglu3-1 displayed less crystalline cellulose content in its root cell wall, shorter root cell length, and a slightly smaller root meristem as visualized by restricted expression of OsCYCB1,1:GUS
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell wall	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Exogenous application of glucose can suppress both the lower root cell wall cellulose content and short root phenotypes of Osglu3-1
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell elongation	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	crown root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Consistently, OsGLU3 is ubiquitously expressed in various tissues with strong expression in root tip, lateral root, and crown root primodia
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	In order to identify new genes involved in root elongation in rice, we screened an ethyl methane sulfonate (EMS)-mutagenized rice library, and isolated a short root mutant, Osglu3-1
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Osglu3-1 displayed less crystalline cellulose content in its root cell wall, shorter root cell length, and a slightly smaller root meristem as visualized by restricted expression of OsCYCB1,1:GUS
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Exogenous application of glucose can suppress both the lower root cell wall cellulose content and short root phenotypes of Osglu3-1
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	The fully functional OsGLU3-GFP was detected in plasma membrane, and FM4-64-labeled compartments in the root meristem and elongation zones
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	Here, we further showed that OsGLU3 is also dispensable for nitrogen starvation induced root elongation in rice
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	phosphate	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	We also found that phosphate starvation, an environmental stress, altered cell wall cellulose content to modulate root elongation in a OsGLU3-dependant way
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	phosphate	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	And the phosphate starvation induced root elongation in rice depends on the function of OsGLU3
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	phosphate	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Osglu3-1 displayed less crystalline cellulose content in its root cell wall, shorter root cell length, and a slightly smaller root meristem as visualized by restricted expression of OsCYCB1,1:GUS
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cellulose	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Exogenous application of glucose can suppress both the lower root cell wall cellulose content and short root phenotypes of Osglu3-1
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	crown	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Consistently, OsGLU3 is ubiquitously expressed in various tissues with strong expression in root tip, lateral root, and crown root primodia
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	Previously, we showed that OsGLU3, a beta-1,4-endoglucanase, can affect the cellulose synthesis for root elongation in rice
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	And the phosphate starvation induced root elongation in rice depends on the function of OsGLU3
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	Here, we further showed that OsGLU3 is also dispensable for nitrogen starvation induced root elongation in rice
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	We characterized a rice mutant, root growth inhibiting (rt), which is defective in root elongation
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	The rt mutant showed a severe defect in cell elongation at the root-elongating zone with additional collapse of epidermal and cortex cells at the root tip caused by the defect in the smooth exfoliation of root cap cells
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	Consistent with these phenotypes, expression of the RT gene, which encodes a member of the membrane-anchored endo-1,4-β-d-glucanase, was specifically localized in the root-elongating zone and at the junction between epidermal and root cap cells
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	The enzymatic analysis of root extracts from the wild-type and rt mutant indicated that RT hydrolyzes noncrystalline amorphous cellulose
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	The cellulose content was slightly increased but the crystallinity of cellulose was decreased in the rt root
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	In addition, the hemicellulose composition was different between wild-type and rt roots
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	The total extensibility was significantly lower in the rt root explants
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	root	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	Based on these results, we concluded that RT is involved in the disassembly of the cell wall for cell elongation in roots as well as for root cap exfoliation from the epidermal cell layer by hydrolyzing the noncrystalline amorphous cellulose fibers of cellulose microfibrils resulting in loosening of the hemicellulose and cellulose interaction
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell wall	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Osglu3-1 displayed less crystalline cellulose content in its root cell wall, shorter root cell length, and a slightly smaller root meristem as visualized by restricted expression of OsCYCB1,1:GUS
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell wall	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Exogenous application of glucose can suppress both the lower root cell wall cellulose content and short root phenotypes of Osglu3-1
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell wall	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	We also found that phosphate starvation, an environmental stress, altered cell wall cellulose content to modulate root elongation in a OsGLU3-dependant way
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	lateral root	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)	Consistently, OsGLU3 is ubiquitously expressed in various tissues with strong expression in root tip, lateral root, and crown root primodia
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell elongation	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	The rt mutant showed a severe defect in cell elongation at the root-elongating zone with additional collapse of epidermal and cortex cells at the root tip caused by the defect in the smooth exfoliation of root cap cells
OsGLU3|RT	Os04g0497200	LOC_Os04g41970	cell elongation	ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	Based on these results, we concluded that RT is involved in the disassembly of the cell wall for cell elongation in roots as well as for root cap exfoliation from the epidermal cell layer by hydrolyzing the noncrystalline amorphous cellulose fibers of cellulose microfibrils resulting in loosening of the hemicellulose and cellulose interaction
OsGluTR	Os10g0502400	LOC_Os10g35840	5-aminolevulinic acid synthesis	An alanine to valine mutation of glutamyl-tRNA reductase enhances 5-aminolevulinic acid synthesis in rice	An alanine to valine mutation of glutamyl-tRNA reductase enhances 5-aminolevulinic acid synthesis in rice
OsGLYI-8	Os05g0295800	LOC_Os05g22970	nucleus	A nucleus-localized rice glyoxalase I enzyme, OsGLYI-8 functions in the detoxification of methylglyoxal in the nucleus.	In contrast to its predicted localization, OsGLYI-8 was found to localize in the nucleus along with its substrate, MG
OsGLYI3	Os03g0277500	LOC_Os03g16940	seed	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 Our previous study suggested that OsGLYI3 may be effective in seed natural aging
OsGLYI3	Os03g0277500	LOC_Os03g16940	seed	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 In this study, the rice OsGLYI3 gene was cloned and characterized as specifically expressed in the seed
OsGLYI3	Os03g0277500	LOC_Os03g16940	seed	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 The accelerated aging (AA) treatment results indicated significant roles of OsGLYI3 in seed longevity and vigor, as the seeds of the transgenic lines with overexpressed and knocked-out OsGLYI3 exhibited higher and lower germination, respectively
OsGLYI3	Os03g0277500	LOC_Os03g16940	seed	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 Collectively, our results confirmed for the first time that OsGLYI3 is specifically expressed in rice seeds and contributes to seed longevity and salt stress tolerance
OsGLYI3	Os03g0277500	LOC_Os03g16940	salt	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 Collectively, our results confirmed for the first time that OsGLYI3 is specifically expressed in rice seeds and contributes to seed longevity and salt stress tolerance
OsGLYI3	Os03g0277500	LOC_Os03g16940	tolerance	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 Collectively, our results confirmed for the first time that OsGLYI3 is specifically expressed in rice seeds and contributes to seed longevity and salt stress tolerance
OsGLYI3	Os03g0277500	LOC_Os03g16940	salt stress	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 Collectively, our results confirmed for the first time that OsGLYI3 is specifically expressed in rice seeds and contributes to seed longevity and salt stress tolerance
OsGLYI3	Os03g0277500	LOC_Os03g16940	stress	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 Rice OsGLYI3 was markedly upregulated in response to NaCl induced stress conditions
OsGLYI3	Os03g0277500	LOC_Os03g16940	stress	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 Collectively, our results confirmed for the first time that OsGLYI3 is specifically expressed in rice seeds and contributes to seed longevity and salt stress tolerance
OsGLYI3	Os03g0277500	LOC_Os03g16940	stress tolerance	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	 Collectively, our results confirmed for the first time that OsGLYI3 is specifically expressed in rice seeds and contributes to seed longevity and salt stress tolerance
OsGLYII1|OsETHE1	Os01g0667200	LOC_Os01g47690	root	Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium	Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium
OsGLYII1|OsETHE1	Os01g0667200	LOC_Os01g47690	calcium	Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium	Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium
OsGLYII1|OsETHE1	Os01g0667200	LOC_Os01g47690	stress	Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium	Moreover, pOsETHE1 activity was induced under various abiotic stresses such as heat, salinity and oxidative stress, suggesting a potential role of OsETHE1 in stress response.
OsGLYII1|OsETHE1	Os01g0667200	LOC_Os01g47690	stress response	Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium	Moreover, pOsETHE1 activity was induced under various abiotic stresses such as heat, salinity and oxidative stress, suggesting a potential role of OsETHE1 in stress response.
OsGLYII1|OsETHE1	Os01g0667200	LOC_Os01g47690	stress	Stress response of OsETHE1 is altered in response to light and dark conditions.	Stress response of OsETHE1 is altered in response to light and dark conditions.
OsGLYII1|OsETHE1	Os01g0667200	LOC_Os01g47690	stress	Stress response of OsETHE1 is altered in response to light and dark conditions.	To this end, we show that the stress response of OsETHE1 is dependent on light and that darkness largely suppresses the stress response of this gene
OsGMST1	Os02g0274900	LOC_Os02g17500	salt stress	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)	OsGMST1 expression is induced by salt treatment and reduced expression confers hypersensitivity to salt stress in rice
OsGMST1	Os02g0274900	LOC_Os02g17500	salt stress	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)	OsGMST1 may play a direct or an indirect role in tolerance to salt stress in rice
OsGMST1	Os02g0274900	LOC_Os02g17500	salt	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)	OsGMST1 expression is induced by salt treatment and reduced expression confers hypersensitivity to salt stress in rice
OsGMST1	Os02g0274900	LOC_Os02g17500	salt	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)	OsGMST1 may play a direct or an indirect role in tolerance to salt stress in rice
OsGMST1	Os02g0274900	LOC_Os02g17500	salt	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)
OsGMST1	Os02g0274900	LOC_Os02g17500	transporter	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)	In this study, reversed genetics was used to identify OsGMST1 as a member of the monosaccharide transporter family in rice
OsGMST1	Os02g0274900	LOC_Os02g17500	transporter	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)	The predicted 481 amino acid protein has the typical features of a sugar transporter in the plastid glucose transporter subfamily consistent with reduced monosaccharide accumulation in plants with reduced OsGMST1 expression
OsGMST1	Os02g0274900	LOC_Os02g17500	transporter	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa)
OsGMT1	Os06g0705000	LOC_Os06g49150	blast	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice.	 In contrast, the OsGMT1 overexpression lines showed significant down-regulation of several defense-associated or cell wall synthesis-associated genes, and enhanced sensitivity to rice blast
OsGMT1	Os06g0705000	LOC_Os06g49150	cell wall	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice.	 In contrast, the OsGMT1 overexpression lines showed significant down-regulation of several defense-associated or cell wall synthesis-associated genes, and enhanced sensitivity to rice blast
OsGMT1	Os06g0705000	LOC_Os06g49150	cell wall synthesis	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice.	 In contrast, the OsGMT1 overexpression lines showed significant down-regulation of several defense-associated or cell wall synthesis-associated genes, and enhanced sensitivity to rice blast
OsGMT1	Os06g0705000	LOC_Os06g49150	plant immunity	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice
OsGMT1	Os06g0705000	LOC_Os06g49150	heading time	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice
OsGMT1	Os06g0705000	LOC_Os06g49150	immunity	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice
OsGMT1	Os06g0705000	LOC_Os06g49150	glycosyltransferase	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	leaf	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice	OsGORK was expressed to some degree in most tissues, such as leaf blade, node, leaf sheath and root, but at high levels in flowers
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	sheath	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice	OsGORK was expressed to some degree in most tissues, such as leaf blade, node, leaf sheath and root, but at high levels in flowers
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	potassium	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	xylem	A dual role for the OsK5.2 ion channel in stomatal movements and K+ loading into xylem sap.	A dual role for the OsK5.2 ion channel in stomatal movements and K+ loading into xylem sap.
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	stomatal	A dual role for the OsK5.2 ion channel in stomatal movements and K+ loading into xylem sap.	A dual role for the OsK5.2 ion channel in stomatal movements and K+ loading into xylem sap.
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	salt	Tissue-Specific Regulation of Na+ and K+ Transporters Explains Genotypic Differences in Salinity Stress Tolerance in Rice.	 This trait was conferred by at least three complementary mechanisms: (1) its superior ability to activate H+-ATPase pump operation, both at transcriptional and functional levels; (2) reduced sensitivity of K+ efflux channels to reactive oxygen species; and (3) smaller upregulation in OsGORK and higher upregulation of OsAKT1 in tolerant cultivars in response to salt stress
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	salt stress	Tissue-Specific Regulation of Na+ and K+ Transporters Explains Genotypic Differences in Salinity Stress Tolerance in Rice.	 This trait was conferred by at least three complementary mechanisms: (1) its superior ability to activate H+-ATPase pump operation, both at transcriptional and functional levels; (2) reduced sensitivity of K+ efflux channels to reactive oxygen species; and (3) smaller upregulation in OsGORK and higher upregulation of OsAKT1 in tolerant cultivars in response to salt stress
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	stress	Tissue-Specific Regulation of Na+ and K+ Transporters Explains Genotypic Differences in Salinity Stress Tolerance in Rice.	 This trait was conferred by at least three complementary mechanisms: (1) its superior ability to activate H+-ATPase pump operation, both at transcriptional and functional levels; (2) reduced sensitivity of K+ efflux channels to reactive oxygen species; and (3) smaller upregulation in OsGORK and higher upregulation of OsAKT1 in tolerant cultivars in response to salt stress
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	reactive oxygen species	Tissue-Specific Regulation of Na+ and K+ Transporters Explains Genotypic Differences in Salinity Stress Tolerance in Rice.	 This trait was conferred by at least three complementary mechanisms: (1) its superior ability to activate H+-ATPase pump operation, both at transcriptional and functional levels; (2) reduced sensitivity of K+ efflux channels to reactive oxygen species; and (3) smaller upregulation in OsGORK and higher upregulation of OsAKT1 in tolerant cultivars in response to salt stress
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	leaf	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	xylem	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	salt	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	tolerance	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.
OsGORK|OsK5.2	Os06g0250600	LOC_Os06g14030	salt tolerance	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K(+) secretion into xylem sap.
OsGPAT3	Os11g0679700	LOC_Os11g45400	pollen	Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice.	Compared with wild-type plants, the osgpat3 mutant displays smaller, pale yellow anthers with defective anther cuticle, degenerated pollen with defective exine, and abnormal tapetum development and degeneration
OsGPAT3	Os11g0679700	LOC_Os11g45400	anther	Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice.	OsGPAT3 is preferentially expressed in the tapetum and microspores of the anther
OsGPAT3	Os11g0679700	LOC_Os11g45400	anther	Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice.	Compared with wild-type plants, the osgpat3 mutant displays smaller, pale yellow anthers with defective anther cuticle, degenerated pollen with defective exine, and abnormal tapetum development and degeneration
OsGPAT3	Os11g0679700	LOC_Os11g45400	development	Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice.	Compared with wild-type plants, the osgpat3 mutant displays smaller, pale yellow anthers with defective anther cuticle, degenerated pollen with defective exine, and abnormal tapetum development and degeneration
OsGPAT3	Os11g0679700	LOC_Os11g45400	tapetum	Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice.	OsGPAT3 is preferentially expressed in the tapetum and microspores of the anther
OsGPAT3	Os11g0679700	LOC_Os11g45400	tapetum	Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice.	Compared with wild-type plants, the osgpat3 mutant displays smaller, pale yellow anthers with defective anther cuticle, degenerated pollen with defective exine, and abnormal tapetum development and degeneration
OsGPAT3	Os11g0679700	LOC_Os11g45400	pollen	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.
OsGPAT3	Os11g0679700	LOC_Os11g45400	pollen	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.	Based on these genetic and cytological analyses, OsGPAT3 is proposed to coordinate the differentiation and degradation of the anther wall and pollen grains in addition to regulating lipid biosynthesis
OsGPAT3	Os11g0679700	LOC_Os11g45400	anther	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.
OsGPAT3	Os11g0679700	LOC_Os11g45400	anther	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.	Based on these genetic and cytological analyses, OsGPAT3 is proposed to coordinate the differentiation and degradation of the anther wall and pollen grains in addition to regulating lipid biosynthesis
OsGPAT3	Os11g0679700	LOC_Os11g45400	sterility	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.	Complementation and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated 9 (Cas9) experiments demonstrated that OsGPAT3 is responsible for the male sterility phenotype
OsGPAT3	Os11g0679700	LOC_Os11g45400	development	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.
OsGPAT3	Os11g0679700	LOC_Os11g45400	cell death	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.
OsGPAT3	Os11g0679700	LOC_Os11g45400	male sterility	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.	Complementation and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated 9 (Cas9) experiments demonstrated that OsGPAT3 is responsible for the male sterility phenotype
OsGPAT3	Os11g0679700	LOC_Os11g45400	pollen development	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.	OsGPAT3 Plays a Critical Role in Anther Wall Programmed Cell Death and Pollen Development in Rice.
OsGPI8	Os02g0219400	LOC_Os02g12740	shoot	The Temperature-Dependent Retention of Introns in GPI8 Transcripts Contributes to a Drooping and Fragile Shoot Phenotype in Rice.	The Temperature-Dependent Retention of Introns in GPI8 Transcripts Contributes to a Drooping and Fragile Shoot Phenotype in Rice.
OsGPI8	Os02g0219400	LOC_Os02g12740	fragile shoot	The Temperature-Dependent Retention of Introns in GPI8 Transcripts Contributes to a Drooping and Fragile Shoot Phenotype in Rice.	The Temperature-Dependent Retention of Introns in GPI8 Transcripts Contributes to a Drooping and Fragile Shoot Phenotype in Rice.
OsGPI8	Os02g0219400	LOC_Os02g12740	drooping shoot	The Temperature-Dependent Retention of Introns in GPI8 Transcripts Contributes to a Drooping and Fragile Shoot Phenotype in Rice.	The Temperature-Dependent Retention of Introns in GPI8 Transcripts Contributes to a Drooping and Fragile Shoot Phenotype in Rice.
OsGPI8	Os02g0219400	LOC_Os02g12740	cell division	The Temperature-Dependent Retention of Introns in GPI8 Transcripts Contributes to a Drooping and Fragile Shoot Phenotype in Rice.	Our data indicate that GPI anchor proteins play important roles in biosynthesis and accumulation of cell wall material, cell shape, and cell division in rice.
OsGPRP3	Os05g0119200	LOC_Os05g02770	spikelet	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Cytological experiments revealed that the cell width of spikelet hull in osgprp3 lines was significantly reduced than that in WT
OsGPRP3	Os05g0119200	LOC_Os05g02770	spikelet	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Taken together, our results reveal that OsGPRP3 regulates the grain size and shape of rice by influencing the cell width of spikelet hulls and the accumulation of storage protein and lipids
OsGPRP3	Os05g0119200	LOC_Os05g02770	grain	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice
OsGPRP3	Os05g0119200	LOC_Os05g02770	grain	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Knockout and knockdown of OsGPRP3 led to significant decrease of 1000-grain weight, grain width, and grain thickness
OsGPRP3	Os05g0119200	LOC_Os05g02770	grain	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Taken together, our results reveal that OsGPRP3 regulates the grain size and shape of rice by influencing the cell width of spikelet hulls and the accumulation of storage protein and lipids
OsGPRP3	Os05g0119200	LOC_Os05g02770	seed	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	We found that OsGPRP3 was highly expressed in the seed at 10 days after pollination (DAP) using qRT-PCR, pOsGPRP3::GUS and in situ hybridization
OsGPRP3	Os05g0119200	LOC_Os05g02770	grain size	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice
OsGPRP3	Os05g0119200	LOC_Os05g02770	grain size	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Taken together, our results reveal that OsGPRP3 regulates the grain size and shape of rice by influencing the cell width of spikelet hulls and the accumulation of storage protein and lipids
OsGPRP3	Os05g0119200	LOC_Os05g02770	grain weight	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Knockout and knockdown of OsGPRP3 led to significant decrease of 1000-grain weight, grain width, and grain thickness
OsGPRP3	Os05g0119200	LOC_Os05g02770	quality	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice
OsGPRP3	Os05g0119200	LOC_Os05g02770	grain width	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Knockout and knockdown of OsGPRP3 led to significant decrease of 1000-grain weight, grain width, and grain thickness
OsGPRP3	Os05g0119200	LOC_Os05g02770	grain quality	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice	Glycine- and Proline-Rich Protein OsGPRP3 Regulates Grain Size and Quality in Rice
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	seed	Cloning and characterization of a glucose 6-phosphate/phosphate translocator fromOryza sativa	A cDNA clone encoding glucose 6-phosphate/phosphate translocator (GPT) was isolated from a cDNA library of immature seeds of rice and named as OsGPT
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	grain	Cloning and characterization of a glucose 6-phosphate/phosphate translocator fromOryza sativa	The OsGPT gene maps on chromosome 8 of rice and is linked to the quantitative trait locus for 1000-grain weight
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	grain weight	Cloning and characterization of a glucose 6-phosphate/phosphate translocator fromOryza sativa	The OsGPT gene maps on chromosome 8 of rice and is linked to the quantitative trait locus for 1000-grain weight
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	development	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Here, we report the functional characterization of OsGPT1 in the rice anther development and pollen fertility
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	development	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	This report highlights a sporophytic role of OsGPT1 in the tapetum degeneration and pollen development
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	development	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	The divergent functions of OsGPT1 and AtGPT1 in pollen development might be a result of their independent evolution after monocots and dicots diverged
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	fertility	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Here, we report the functional characterization of OsGPT1 in the rice anther development and pollen fertility
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Here, we report the functional characterization of OsGPT1 in the rice anther development and pollen fertility
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Pollen grains from homozygous osgpt1 mutant plants fail to accumulate starch granules, resulting in pollen sterility
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Degeneration of the tapetum, an important process to provide cellular contents to support pollen development, is impeded in osgpt1 plants
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	In addition, defective intine and exine are observed in the pollen from osgpt1 plants
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Expression levels of multiple genes that are important to tapetum degeneration or pollen wall formation are significantly decreased in osgpt1 anthers
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	This report highlights a sporophytic role of OsGPT1 in the tapetum degeneration and pollen development
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	The divergent functions of OsGPT1 and AtGPT1 in pollen development might be a result of their independent evolution after monocots and dicots diverged
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	anther	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Here, we report the functional characterization of OsGPT1 in the rice anther development and pollen fertility
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	anther	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	OsGPT1 is highly expressed in the tapetal layer of rice anther
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	sterility	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Pollen grains from homozygous osgpt1 mutant plants fail to accumulate starch granules, resulting in pollen sterility
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	starch	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Pollen grains from homozygous osgpt1 mutant plants fail to accumulate starch granules, resulting in pollen sterility
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	anther development	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Here, we report the functional characterization of OsGPT1 in the rice anther development and pollen fertility
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	tapetum	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Expression levels of multiple genes that are important to tapetum degeneration or pollen wall formation are significantly decreased in osgpt1 anthers
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	tapetum	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	This report highlights a sporophytic role of OsGPT1 in the tapetum degeneration and pollen development
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	tapetal	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	OsGPT1 is highly expressed in the tapetal layer of rice anther
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	tapetum degeneration	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Expression levels of multiple genes that are important to tapetum degeneration or pollen wall formation are significantly decreased in osgpt1 anthers
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	tapetum degeneration	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	This report highlights a sporophytic role of OsGPT1 in the tapetum degeneration and pollen development
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen development	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Degeneration of the tapetum, an important process to provide cellular contents to support pollen development, is impeded in osgpt1 plants
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen development	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	This report highlights a sporophytic role of OsGPT1 in the tapetum degeneration and pollen development
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen development	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	The divergent functions of OsGPT1 and AtGPT1 in pollen development might be a result of their independent evolution after monocots and dicots diverged
OsGPT|OsGPT1	Os08g0187800	LOC_Os08g08840	pollen wall	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice	Expression levels of multiple genes that are important to tapetum degeneration or pollen wall formation are significantly decreased in osgpt1 anthers
OsGPX1	Os04g0556300	LOC_Os04g46960	salt tolerance	Mitochondrial GPX1 silencing triggers differential photosynthesis impairment in response to salinity in rice plants.	Transformed plants exhibited lower photorespiration, water use efficiency and root growth, indicating that GPX1 could be important to salt tolerance.
OsGPX1	Os04g0556300	LOC_Os04g46960	photosynthesis	Mitochondrial GPX1 silencing triggers differential photosynthesis impairment in response to salinity in rice plants.	Growth reduction of GPX1s line might be related to photosynthesis impairment, which in turn could have involved a cross talk mechanism between mitochondria and chloroplast originated from redox changes due to GPX1 deficiency.
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	homeostasis	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	mitochondria	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	Transgenic rice plants have been generated that lack mitochondrial OsGPX3
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	mitochondria	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	These GPX3s plants showed shorter roots and shoots compared to non-transformed (NT) plants, and higher amounts of H2O2 mitochondrial release were observed in the roots of these plants cultivated under normal conditions
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	mitochondria	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	These results suggest that silencing the mitochondrial OsGPX3 gene impairs normal plant development and leads to a stress-induced morphogenic response via H2O2 accumulation
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	mitochondria	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	root	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	These GPX3s plants showed shorter roots and shoots compared to non-transformed (NT) plants, and higher amounts of H2O2 mitochondrial release were observed in the roots of these plants cultivated under normal conditions
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	root	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	This accumulation of H2O2 is positively associated with shorter root length in GPX3s plants compared to NT ones
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	root	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	Moreover, GPX3 promoter analysis indicated that it is mainly expressed in root tissue
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	root	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	shoot	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	These GPX3s plants showed shorter roots and shoots compared to non-transformed (NT) plants, and higher amounts of H2O2 mitochondrial release were observed in the roots of these plants cultivated under normal conditions
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	shoot	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	ABA	The mitochondrial isoform glutathione peroxidase 3 (OsGPX3) is involved in ABA responses in rice plants	This study is the first to demonstrate that OsGPX3 plays a role in ABA signaling and corroborate that redox homeostasis enzymes can act in different and complex pathways in plant cells
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	homeostasis	The mitochondrial isoform glutathione peroxidase 3 (OsGPX3) is involved in ABA responses in rice plants	This study is the first to demonstrate that OsGPX3 plays a role in ABA signaling and corroborate that redox homeostasis enzymes can act in different and complex pathways in plant cells
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	abscisic acid	The mitochondrial isoform glutathione peroxidase 3 (OsGPX3) is involved in ABA responses in rice plants	Nipponbare) OsGPX3 is induced after treatment with the phytohormone abscisic acid (ABA) and is involved in its responses and in epigenetic modifications
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	ABA	The mitochondrial isoform glutathione peroxidase 3 (OsGPX3) is involved in ABA responses in rice plants	This study is the first to demonstrate that OsGPX3 plays a role in ABA signaling and corroborate that redox homeostasis enzymes can act in different and complex pathways in plant cells
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	phytohormone	The mitochondrial isoform glutathione peroxidase 3 (OsGPX3) is involved in ABA responses in rice plants	Nipponbare) OsGPX3 is induced after treatment with the phytohormone abscisic acid (ABA) and is involved in its responses and in epigenetic modifications
OsGpx3|GPX3|OsGPx03	Os02g0664000	LOC_Os02g44500	redox homeostasis	The mitochondrial isoform glutathione peroxidase 3 (OsGPX3) is involved in ABA responses in rice plants	This study is the first to demonstrate that OsGPX3 plays a role in ABA signaling and corroborate that redox homeostasis enzymes can act in different and complex pathways in plant cells
Osgr-rbp4|Osgrp1	Os12g0632000	LOC_Os12g43600	temperature	Molecular characterization of a novel isoform of rice (Oryza sativa L.) glycine rich-RNA binding protein and evidence for its involvement in high temperature stress response	Osgr-rbp4 transcript in rice seedlings is constitutively expressed as well as regulated by different abiotic stresses including high temperature stress
Osgr-rbp4|Osgrp1	Os12g0632000	LOC_Os12g43600	temperature	Molecular characterization of a novel isoform of rice (Oryza sativa L.) glycine rich-RNA binding protein and evidence for its involvement in high temperature stress response	Ectopic over-expression of Osgr-rbp4 cDNA imparts high temperature stress tolerance to wild type yeast cells
Osgr-rbp4|Osgrp1	Os12g0632000	LOC_Os12g43600	cell elongation	Expression of the rice Osgrp1 promoter-Gus reporter gene is specifically associated with cell elongation/expansion and differentiation	Thus, the expression of the Osgrp1 gene is closely associated with cell elongation/expansion during the post-mitotic cell differentiation process
Osgr-rbp4|Osgrp1	Os12g0632000	LOC_Os12g43600	cell elongation	Expression of the rice Osgrp1 promoter-Gus reporter gene is specifically associated with cell elongation/expansion and differentiation	Expression of the rice Osgrp1 promoter-Gus reporter gene is specifically associated with cell elongation/expansion and differentiation
Osgr-rbp4|Osgrp1	Os12g0632000	LOC_Os12g43600	root	Expression of the rice Osgrp1 promoter-Gus reporter gene is specifically associated with cell elongation/expansion and differentiation	The Osgrp1-Gus gene was also expressed in response to wounding and down-regulated by water-stress conditions in the elongation region of roots
Osgr-rbp4|Osgrp1	Os12g0632000	LOC_Os12g43600	leaf	Molecular characterization of a novel isoform of rice (Oryza sativa L.) glycine rich-RNA binding protein and evidence for its involvement in high temperature stress response	It is shown that OsGR-RBP4 in rice leaf cells and its immunologically homologous protein in tobacco BY2 protoplasts are nuclear proteins
Osgr-rbp4|Osgrp1	Os12g0632000	LOC_Os12g43600	cell wall	Expression of the rice Osgrp1 promoter-Gus reporter gene is specifically associated with cell elongation/expansion and differentiation	To study the expression and regulation of a rice glycine-rich cell wall protein gene, Osgrp1, transgenic rice plants were regenerated that contain the Osgrp1 promoter or its 5' deletions fused with the bacterial beta-glucuronidase (GUS) reporter gene
Osgr-rbp4|Osgrp1	Os12g0632000	LOC_Os12g43600	seedling	Molecular characterization of a novel isoform of rice (Oryza sativa L.) glycine rich-RNA binding protein and evidence for its involvement in high temperature stress response	Osgr-rbp4 transcript in rice seedlings is constitutively expressed as well as regulated by different abiotic stresses including high temperature stress
Osgr-rbp4|Osgrp1	Os12g0632000	LOC_Os12g43600	abiotic stress	Molecular characterization of a novel isoform of rice (Oryza sativa L.) glycine rich-RNA binding protein and evidence for its involvement in high temperature stress response	Osgr-rbp4 transcript in rice seedlings is constitutively expressed as well as regulated by different abiotic stresses including high temperature stress
OsGR1	Os03g0163300	LOC_Os03g06740	root	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings	The expression of OsGR2 and OsGR3 but not OsGR1 was increased in rice roots treated with NaCl
OsGR1	Os03g0163300	LOC_Os03g06740	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	The expression of OsGR2 and OsGR3 but not OsGR1 was increased in rice roots treated with 150 mM NaCl
OsGR1	Os03g0163300	LOC_Os03g06740	chloroplast	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	Semi-quantitative RT-PCR was applied to quantify the mRNA levels for one cytosolic (OsGR2) and two chloroplastic (OsGR1 and OsGR3) isoforms of glutathione reductase identified in the rice genome
OsGR1	Os03g0163300	LOC_Os03g06740	chloroplast	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings	Semi-quantitative RT-PCR was used to quantify the mRNA levels for one cytosolic (OsGR2) and two chloroplastic (OsGR1 and OsGR3) isoforms of GR identified in the rice genome
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	The expression of OsGR2 and OsGR3 but not OsGR1 was increased in rice roots treated with 150 mM NaCl
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	In fact, exogenous application of ABA enhanced the expression of OsGR2 and OsGR3 in rice roots
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	On inhibiting ABA accumulation with sodium tungstate (Tu), an inhibitor of ABA biosynthesis, the expression of OsGR2 and OsGR3 was still induced by NaCl; therefore, NaCl-triggered expression of OsGR2 and OsGR3 in rice roots is not mediated by accumulation of ABA
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	However, NaCl treatment could induce H2O2 production in rice roots, and H2O2 treatment resulted in enhanced OsGR2 and OsGR3 induction
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	Moreover, the increase in H2O2 level was prior to the induction of OsGR2 and OsGR3 in NaCl-treated rice roots
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	Thus, H2O2, but not ABA, is involved in regulation of OsGR2 and OsGR3 expression in NaCl-treated rice roots
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	ABA	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	In fact, exogenous application of ABA enhanced the expression of OsGR2 and OsGR3 in rice roots
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	ABA	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	On inhibiting ABA accumulation with sodium tungstate (Tu), an inhibitor of ABA biosynthesis, the expression of OsGR2 and OsGR3 was still induced by NaCl; therefore, NaCl-triggered expression of OsGR2 and OsGR3 in rice roots is not mediated by accumulation of ABA
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	root	Gene cloning and expression of cytosolic glutathione reductase in rice (Oryza sativa L.)	mRNA and protein of RGRC2 were observed mainly in roots and calli but little in leaf tissues
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	ABA	Gene cloning and expression of cytosolic glutathione reductase in rice (Oryza sativa L.)	From the presence of two ABA-responsive elements in the 5'-flanking region of RGRC2, we examined the expression in rice seedlings treated with ABA and the ABA-related environmental stresses, chilling, drought and salinity
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	salinity	Gene cloning and expression of cytosolic glutathione reductase in rice (Oryza sativa L.)	From the presence of two ABA-responsive elements in the 5'-flanking region of RGRC2, we examined the expression in rice seedlings treated with ABA and the ABA-related environmental stresses, chilling, drought and salinity
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	chloroplast	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings	Semi-quantitative RT-PCR was used to quantify the mRNA levels for one cytosolic (OsGR2) and two chloroplastic (OsGR1 and OsGR3) isoforms of GR identified in the rice genome
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	chloroplast	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	Semi-quantitative RT-PCR was applied to quantify the mRNA levels for one cytosolic (OsGR2) and two chloroplastic (OsGR1 and OsGR3) isoforms of glutathione reductase identified in the rice genome
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	drought	Gene cloning and expression of cytosolic glutathione reductase in rice (Oryza sativa L.)	From the presence of two ABA-responsive elements in the 5'-flanking region of RGRC2, we examined the expression in rice seedlings treated with ABA and the ABA-related environmental stresses, chilling, drought and salinity
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	root	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings	The expression of OsGR2 and OsGR3 but not OsGR1 was increased in rice roots treated with NaCl
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	root	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings	NaCl-induced OsGR2 and OsGR3 in rice roots could be associated with Na(+) but not an osmotic component
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	leaf	Gene cloning and expression of cytosolic glutathione reductase in rice (Oryza sativa L.)	mRNA and protein of RGRC2 were observed mainly in roots and calli but little in leaf tissues
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	chilling	Gene cloning and expression of cytosolic glutathione reductase in rice (Oryza sativa L.)	From the presence of two ABA-responsive elements in the 5'-flanking region of RGRC2, we examined the expression in rice seedlings treated with ABA and the ABA-related environmental stresses, chilling, drought and salinity
OsGR2|RGRC2	Os02g0813500	LOC_Os02g56850	seedling	Gene cloning and expression of cytosolic glutathione reductase in rice (Oryza sativa L.)	From the presence of two ABA-responsive elements in the 5'-flanking region of RGRC2, we examined the expression in rice seedlings treated with ABA and the ABA-related environmental stresses, chilling, drought and salinity
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	chloroplast	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	In this work, we describe the cloning and characterization of the full-length cDNA encoding OsGR3, a chloroplast-localized GR that up to now was considered as a non-functional enzyme because of assumed lack of N-terminal conserved domains
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	chloroplast	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	OsGR3 shows 76 and 53 % identity with OsGR1 (chloroplastic) and OsGR2 (cytosolic), respectively
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	chloroplast	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	A plastid transit peptide is located at the N terminus of OsGR3, and genetic transformation of rice with a GR3-GFP fusion construct further confirmed its localization in chloroplasts
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	chloroplast	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	Furthermore, OsGR1 and OsGR3 are also targeted to mitochondria, which suggest a combined antioxidant mechanism in both chloroplasts and mitochondria
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	jasmonate	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	In addition, the transcript level of OsGR3 was greatly increased with salicylic acid treatment but was not significantly affected by methyl jasmonate, dehydration or heat shock stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	ABA	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	In fact, exogenous application of ABA enhanced the expression of OsGR2 and OsGR3 in rice roots
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	ABA	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	On inhibiting ABA accumulation with sodium tungstate (Tu), an inhibitor of ABA biosynthesis, the expression of OsGR2 and OsGR3 was still induced by NaCl; therefore, NaCl-triggered expression of OsGR2 and OsGR3 in rice roots is not mediated by accumulation of ABA
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salt stress	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	However, both isoforms showed a distinct response to salinity: the expression of OsGR3 but not OsGR1 was induced by salt stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salt stress	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	Our results provide new clues about the possible roles of functional OsGR3 in salt stress and biotic stress tolerance
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	mitochondria	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	Furthermore, OsGR1 and OsGR3 are also targeted to mitochondria, which suggest a combined antioxidant mechanism in both chloroplasts and mitochondria
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salicylic acid	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	In addition, the transcript level of OsGR3 was greatly increased with salicylic acid treatment but was not significantly affected by methyl jasmonate, dehydration or heat shock stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	biotic stress	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	Our results provide new clues about the possible roles of functional OsGR3 in salt stress and biotic stress tolerance
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salinity	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	However, both isoforms showed a distinct response to salinity: the expression of OsGR3 but not OsGR1 was induced by salt stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	chloroplast	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings	Semi-quantitative RT-PCR was used to quantify the mRNA levels for one cytosolic (OsGR2) and two chloroplastic (OsGR1 and OsGR3) isoforms of GR identified in the rice genome
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	chloroplast	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	Semi-quantitative RT-PCR was applied to quantify the mRNA levels for one cytosolic (OsGR2) and two chloroplastic (OsGR1 and OsGR3) isoforms of glutathione reductase identified in the rice genome
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salt	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	However, both isoforms showed a distinct response to salinity: the expression of OsGR3 but not OsGR1 was induced by salt stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salt	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice	Our results provide new clues about the possible roles of functional OsGR3 in salt stress and biotic stress tolerance
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	root	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings	The expression of OsGR2 and OsGR3 but not OsGR1 was increased in rice roots treated with NaCl
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	root	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings	NaCl-induced OsGR2 and OsGR3 in rice roots could be associated with Na(+) but not an osmotic component
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	The expression of OsGR2 and OsGR3 but not OsGR1 was increased in rice roots treated with 150 mM NaCl
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	In fact, exogenous application of ABA enhanced the expression of OsGR2 and OsGR3 in rice roots
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	On inhibiting ABA accumulation with sodium tungstate (Tu), an inhibitor of ABA biosynthesis, the expression of OsGR2 and OsGR3 was still induced by NaCl; therefore, NaCl-triggered expression of OsGR2 and OsGR3 in rice roots is not mediated by accumulation of ABA
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	However, NaCl treatment could induce H2O2 production in rice roots, and H2O2 treatment resulted in enhanced OsGR2 and OsGR3 induction
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	Moreover, the increase in H2O2 level was prior to the induction of OsGR2 and OsGR3 in NaCl-treated rice roots
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	root	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	Thus, H2O2, but not ABA, is involved in regulation of OsGR2 and OsGR3 expression in NaCl-treated rice roots
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	root	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	GR3 promoter-GUS was expressed in the vascular cylinder and cortex of root tissues in rice seedlings, vascular tissue of nodes, embryo and aleurone layer of seeds, and young flowers
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	mitochondria	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Previously, we showed that salt-stress-responsive GR3 is a functional protein localized in chloroplasts and mitochondria in rice
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	seedling	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Rice GR3 was primarily expressed in roots at the seedling stage and ubiquitously expressed in all tissues except the sheath at heading stage
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	sheath	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Rice GR3 was primarily expressed in roots at the seedling stage and ubiquitously expressed in all tissues except the sheath at heading stage
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	oxidative stress	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Oxidative stress, indicated by malondialdehyde content, was greater in gr3 than the WT under salt stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	oxidative	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Oxidative stress, indicated by malondialdehyde content, was greater in gr3 than the WT under salt stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salt	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Oxidative stress, indicated by malondialdehyde content, was greater in gr3 than the WT under salt stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salt	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	As compared with the WT, gr3 was sensitive to salt and methyl viologen; it showed inhibited growth, decreased maximal efficiency of photosystem II, decreased GSH and GSSG contents, and the ratio of GSH to GSSG
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salt	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	These results reveal that GR3 plays an important role in salt stress tolerance by regulating the GSH redox state in rice
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salt stress	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Oxidative stress, indicated by malondialdehyde content, was greater in gr3 than the WT under salt stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	salt stress	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	These results reveal that GR3 plays an important role in salt stress tolerance by regulating the GSH redox state in rice
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	tolerance	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	These results reveal that GR3 plays an important role in salt stress tolerance by regulating the GSH redox state in rice
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	stress	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Oxidative stress, indicated by malondialdehyde content, was greater in gr3 than the WT under salt stress
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	stress	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	These results reveal that GR3 plays an important role in salt stress tolerance by regulating the GSH redox state in rice
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	stress tolerance	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	To learn more about the role of GR3 in salt-stress tolerance, we investigated the response to 100 mM NaCl treatment in wild-type rice (WT); GR3 knockout mutant of rice (gr3); and the functional gr3-complementation line (C1)
OsGR3|GR3	Os10g0415300	LOC_Os10g28000	stress tolerance	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	These results reveal that GR3 plays an important role in salt stress tolerance by regulating the GSH redox state in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	brassinosteroid	OsGRAS19 may be a novel component involved in the brassinosteroid signaling pathway in rice	OsGRAS19 may be a novel component involved in the brassinosteroid signaling pathway in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	grain	Novel OsGRAS19 mutant, D26, positively regulates grain shape in rice (Oryza sativa).	Novel OsGRAS19 mutant, D26, positively regulates grain shape in rice (Oryza sativa).
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	brassinosteroid	Novel OsGRAS19 mutant, D26, positively regulates grain shape in rice (Oryza sativa).	 Gene D26 is a novel site mutation of OsGRAS19 and involved in the brassinosteroid (BR) signalling pathway
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	Brassinosteroid	Novel OsGRAS19 mutant, D26, positively regulates grain shape in rice (Oryza sativa).	 Gene D26 is a novel site mutation of OsGRAS19 and involved in the brassinosteroid (BR) signalling pathway
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	resistance	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 We characterized the function of OsSCL7 in rice disease resistance
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	resistance	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 oryzae and pathogen-associated molecular pattern treatments, and knocking out OsSCL7 resulted in decreased disease resistance of rice to M
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	resistance	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 In contrast, overexpression of OsSCL7 could improve rice disease resistance to M
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	disease	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 We characterized the function of OsSCL7 in rice disease resistance
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	disease	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 oryzae and pathogen-associated molecular pattern treatments, and knocking out OsSCL7 resulted in decreased disease resistance of rice to M
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	disease	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 In contrast, overexpression of OsSCL7 could improve rice disease resistance to M
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	disease resistance	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 We characterized the function of OsSCL7 in rice disease resistance
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	disease resistance	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 oryzae and pathogen-associated molecular pattern treatments, and knocking out OsSCL7 resulted in decreased disease resistance of rice to M
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	disease resistance	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 In contrast, overexpression of OsSCL7 could improve rice disease resistance to M
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	immunity	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	immunity	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 Taken together, these findings uncover the important roles of OsSCL7 and GF14c in plant immunity and a potential mechanism by which plants fine-tune immunity by regulating the protein stability of a GRAS protein via a 14-3-3 protein
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	nucleus	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	 OsSCL7 was mainly localized in the nucleus and showed transcriptional activity
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	grain	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Cytological analysis showed that WG3 regulates grain size by affecting cell proliferation
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	grain	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Moreover, we found that WG3 directly interacts with DWARF AND LOW-TILLERING (DLT), a previously reported GRAS protein, and a genetic experiment demonstrated that WG3 and DLT function in a common pathway to regulate grain size
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	grain	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 CONCLUSION: WG3 functions directly in regulating grain size and BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	grain size	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Cytological analysis showed that WG3 regulates grain size by affecting cell proliferation
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	grain size	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Moreover, we found that WG3 directly interacts with DWARF AND LOW-TILLERING (DLT), a previously reported GRAS protein, and a genetic experiment demonstrated that WG3 and DLT function in a common pathway to regulate grain size
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	grain size	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 CONCLUSION: WG3 functions directly in regulating grain size and BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	brassinosteroid	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Additionally, a brassinosteroid (BR) sensitivity test suggested that WG3 has a positive role in BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	BR	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Additionally, a brassinosteroid (BR) sensitivity test suggested that WG3 has a positive role in BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	BR	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 CONCLUSION: WG3 functions directly in regulating grain size and BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	Brassinosteroid	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Additionally, a brassinosteroid (BR) sensitivity test suggested that WG3 has a positive role in BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	BR signaling	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Additionally, a brassinosteroid (BR) sensitivity test suggested that WG3 has a positive role in BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	BR signaling	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 CONCLUSION: WG3 functions directly in regulating grain size and BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	dwarf	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Moreover, we found that WG3 directly interacts with DWARF AND LOW-TILLERING (DLT), a previously reported GRAS protein, and a genetic experiment demonstrated that WG3 and DLT function in a common pathway to regulate grain size
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	 BR 	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Additionally, a brassinosteroid (BR) sensitivity test suggested that WG3 has a positive role in BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	 BR 	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 CONCLUSION: WG3 functions directly in regulating grain size and BR signaling in rice
OsGRAS19|OsSCL7|WG3	Os03g0723000	LOC_Os03g51330	cell proliferation	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate Grain Size and Brassinosteroid Signaling in Rice.	 Cytological analysis showed that WG3 regulates grain size by affecting cell proliferation
OsGRAS23	Os04g0590400	LOC_Os04g50060	transcription factor	OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes.	Our results demonstrate that OsGRAS23 encodes a stress-responsive GRAS transcription factor and positively modulates rice drought tolerance via the induction of a number of stress-responsive genes
OsGRAS23	Os04g0590400	LOC_Os04g50060	drought	OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes.	Our results demonstrate that OsGRAS23 encodes a stress-responsive GRAS transcription factor and positively modulates rice drought tolerance via the induction of a number of stress-responsive genes
OsGRAS23	Os04g0590400	LOC_Os04g50060	drought tolerance	OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes.	Our results demonstrate that OsGRAS23 encodes a stress-responsive GRAS transcription factor and positively modulates rice drought tolerance via the induction of a number of stress-responsive genes
OsGRAS23	Os04g0590400	LOC_Os04g50060	tolerance	OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes.	Our results demonstrate that OsGRAS23 encodes a stress-responsive GRAS transcription factor and positively modulates rice drought tolerance via the induction of a number of stress-responsive genes
OsGRAS23	Os04g0590400	LOC_Os04g50060	jasmonic	OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes.	The expression of OsGRAS23 was induced by drought, NaCl, and jasmonic acid treatments
OsGRAS23	Os04g0590400	LOC_Os04g50060	jasmonic acid	OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes.	The expression of OsGRAS23 was induced by drought, NaCl, and jasmonic acid treatments
OsGRAS23	Os04g0590400	LOC_Os04g50060	drought	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 Only OsGRAS23 (here named as OsGRAS22) was reported to code for a TF that induced drought tolerance in rice
OsGRAS23	Os04g0590400	LOC_Os04g50060	tolerance	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 Only OsGRAS23 (here named as OsGRAS22) was reported to code for a TF that induced drought tolerance in rice
OsGRAS23	Os04g0590400	LOC_Os04g50060	drought tolerance	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 Only OsGRAS23 (here named as OsGRAS22) was reported to code for a TF that induced drought tolerance in rice
OsGRAS39	Os11g0141500|Os11g0141550	LOC_Os11g04570	sheath	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsGRAS39	Os11g0141500|Os11g0141550	LOC_Os11g04570	blight	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsGRAS39	Os11g0141500|Os11g0141550	LOC_Os11g04570	abiotic stress	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsGRAS39	Os11g0141500|Os11g0141550	LOC_Os11g04570	stress	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsGRAS39	Os11g0141500|Os11g0141550	LOC_Os11g04570	biotic stress	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	resistance	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and Disease Resistance in Rice	 Taken together, our results indicate that OsGRDP1 is a critical feedback regulator, thus contributing to the elucidation of the mechanism underlying cell death and disease resistance
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	development	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and Disease Resistance in Rice	 OsGRDP1 was expressed constitutively in all of the organs of the wild-type plants, but it was upregulated throughout plant development in the spl-D mutant
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	plant development	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and Disease Resistance in Rice	 OsGRDP1 was expressed constitutively in all of the organs of the wild-type plants, but it was upregulated throughout plant development in the spl-D mutant
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	disease	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and Disease Resistance in Rice	 Taken together, our results indicate that OsGRDP1 is a critical feedback regulator, thus contributing to the elucidation of the mechanism underlying cell death and disease resistance
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	disease resistance	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and Disease Resistance in Rice	 Taken together, our results indicate that OsGRDP1 is a critical feedback regulator, thus contributing to the elucidation of the mechanism underlying cell death and disease resistance
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	cell death	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and Disease Resistance in Rice	 Taken together, our results indicate that OsGRDP1 is a critical feedback regulator, thus contributing to the elucidation of the mechanism underlying cell death and disease resistance
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	lesion	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and Disease Resistance in Rice	 Both the overexpression (OE) and knockdown (RNAi) of OsGRDP1 resulted in the lesion mimic phenotype
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	lesion	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and Disease Resistance in Rice	 Moreover, the intact protein level of OsGRDP1 was reduced in the spotted leaves from both OE and RNAi plants, suggesting that the disruption of intact OsGRDP1 is responsible for lesion formation
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	lesion mimic	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and Disease Resistance in Rice	 Both the overexpression (OE) and knockdown (RNAi) of OsGRDP1 resulted in the lesion mimic phenotype
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	chloroplast	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	chloroplast	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 RNA sequencing, gene expression, and protein activity analyses indicate that LSL1 is required for chloroplast function
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	chloroplast	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 Furthermore, LSL1 interacts with PsaD and PAP10 to form a regulatory module that functions in chlorophyll synthesis and chloroplast development to maintain redox balance
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	chloroplast	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 Our results reveal that LSL1 maintains chloroplast structure, redox homeostasis, and DNA stability, and plays important roles in the interaction between genetic factors and environmental signals and in regulating grain size and quality
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	development	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 Furthermore, LSL1 interacts with PsaD and PAP10 to form a regulatory module that functions in chlorophyll synthesis and chloroplast development to maintain redox balance
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	grain	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	grain	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 The terminal deoxynucleotidyl transferase dUTP nick end-labeling (TUNEL) and comet assays revealed that the lsl1 mutant contained severe DNA damage, resulting in reduced grain yield and quality
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	grain	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 Our results reveal that LSL1 maintains chloroplast structure, redox homeostasis, and DNA stability, and plays important roles in the interaction between genetic factors and environmental signals and in regulating grain size and quality
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	grain size	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 Our results reveal that LSL1 maintains chloroplast structure, redox homeostasis, and DNA stability, and plays important roles in the interaction between genetic factors and environmental signals and in regulating grain size and quality
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	grain yield	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 The terminal deoxynucleotidyl transferase dUTP nick end-labeling (TUNEL) and comet assays revealed that the lsl1 mutant contained severe DNA damage, resulting in reduced grain yield and quality
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	quality	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 The terminal deoxynucleotidyl transferase dUTP nick end-labeling (TUNEL) and comet assays revealed that the lsl1 mutant contained severe DNA damage, resulting in reduced grain yield and quality
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	quality	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 Our results reveal that LSL1 maintains chloroplast structure, redox homeostasis, and DNA stability, and plays important roles in the interaction between genetic factors and environmental signals and in regulating grain size and quality
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	yield	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 The terminal deoxynucleotidyl transferase dUTP nick end-labeling (TUNEL) and comet assays revealed that the lsl1 mutant contained severe DNA damage, resulting in reduced grain yield and quality
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	cell death	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	cell death	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 In addition, the lsl1 mutant exhibited reactive oxygen species accumulation and cell death
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	chloroplast development	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 Furthermore, LSL1 interacts with PsaD and PAP10 to form a regulatory module that functions in chlorophyll synthesis and chloroplast development to maintain redox balance
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	chlorophyll	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 Furthermore, LSL1 interacts with PsaD and PAP10 to form a regulatory module that functions in chlorophyll synthesis and chloroplast development to maintain redox balance
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	reactive oxygen species	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 In addition, the lsl1 mutant exhibited reactive oxygen species accumulation and cell death
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	redox homeostasis	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 Our results reveal that LSL1 maintains chloroplast structure, redox homeostasis, and DNA stability, and plays important roles in the interaction between genetic factors and environmental signals and in regulating grain size and quality
OsGRDP1|LSL1	Os11g0621300	LOC_Os11g40590	lesion	LSL1 controls cell death and grain production by stabilizing chloroplast in rice.	 The lesion phenotype of the lsl1 mutant was sharply induced by shading, and its detached leaves incubated in 6-benzylamino purine similarly formed lesions in the dark
OsGRF1|rhd1	Os02g0776900	LOC_Os02g53690	heading date	Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date	Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date
OsGRF1|rhd1	Os02g0776900	LOC_Os02g53690	growth	Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date	RNA interference results revealed that transgenic lines with reduced OsGRF1 transcript displayed delayed growth and development, developed small leaves, and had delayed heading
OsGRF1|rhd1	Os02g0776900	LOC_Os02g53690	growth	Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date	Our results clearly demonstrate that the OsGRF1 gene is not only involved in regulating growth at the juvenile stage, but that it may also be involved in the regulation of heading in rice
OsGRF1|rhd1	Os02g0776900	LOC_Os02g53690	heading date	Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date	A rice mutant with reduced heading date (designated rhd1) found in a transgenic line of cultivar Teqing 2 (Oryza sativa L
OsGRF1|rhd1	Os02g0776900	LOC_Os02g53690	heading date	Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date	Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date
OsGRF1|rhd1	Os02g0776900	LOC_Os02g53690	transcription factor	Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date	The OsGRF1 gene encodes a putative transcription factor, which contains two conserved regions: the QLQ (Gln, Leu, Gln) and WRC (Trp, Arg, Cys) domains
OsGRF5	None	LOC_Os06g02560	growth	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.	Conversely, RNA interference silencing of OsGRF3, OsGRF4, and OsGRF5 resulted in dwarfism, delayed growth and inflorescence formation, and up-regulation of Oskn2
OsGRF5	None	LOC_Os06g02560	inflorescence	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.	Conversely, RNA interference silencing of OsGRF3, OsGRF4, and OsGRF5 resulted in dwarfism, delayed growth and inflorescence formation, and up-regulation of Oskn2
OsGRF5	None	LOC_Os06g02560	growth	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.	Conversely, RNA interference silencing of OsGRF3, OsGRF4, and OsGRF5 resulted in dwarfism, delayed growth and inflorescence formation, and up-regulation of Oskn2
OsGRF5	None	LOC_Os06g02560	inflorescence	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.	Conversely, RNA interference silencing of OsGRF3, OsGRF4, and OsGRF5 resulted in dwarfism, delayed growth and inflorescence formation, and up-regulation of Oskn2
OsGRF6	Os03g0729500	LOC_Os03g51970	spikelet	Blocking miR396 increases rice yield by shaping inflorescence architecture	The upregulation of OsGRF6 results in the coordinated activation of several immediate downstream biological clades, including auxin (IAA) biosynthesis, auxin response factors, and branch and spikelet development-related transcription factors
OsGRF6	Os03g0729500	LOC_Os03g51970	transcription factor	Blocking miR396 increases rice yield by shaping inflorescence architecture	The upregulation of OsGRF6 results in the coordinated activation of several immediate downstream biological clades, including auxin (IAA) biosynthesis, auxin response factors, and branch and spikelet development-related transcription factors
OsGRF6	Os03g0729500	LOC_Os03g51970	auxin	Blocking miR396 increases rice yield by shaping inflorescence architecture	The upregulation of OsGRF6 results in the coordinated activation of several immediate downstream biological clades, including auxin (IAA) biosynthesis, auxin response factors, and branch and spikelet development-related transcription factors
OsGRF6	Os03g0729500	LOC_Os03g51970	auxin response	Blocking miR396 increases rice yield by shaping inflorescence architecture	The upregulation of OsGRF6 results in the coordinated activation of several immediate downstream biological clades, including auxin (IAA) biosynthesis, auxin response factors, and branch and spikelet development-related transcription factors
OsGRF6	Os03g0729500	LOC_Os03g51970	spikelet development	Blocking miR396 increases rice yield by shaping inflorescence architecture	The upregulation of OsGRF6 results in the coordinated activation of several immediate downstream biological clades, including auxin (IAA) biosynthesis, auxin response factors, and branch and spikelet development-related transcription factors
OsGRF6	Os03g0729500	LOC_Os03g51970	seedlings	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGRF6	Os03g0729500	LOC_Os03g51970	growth	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice
OsGRF6	Os03g0729500	LOC_Os03g51970	growth	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	These results suggest that OsGRF6 is an important regulator in the balance between growth and chilling tolerance in rice
OsGRF6	Os03g0729500	LOC_Os03g51970	tolerance	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice
OsGRF6	Os03g0729500	LOC_Os03g51970	tolerance	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	After cold treatment and recovery, the survival rates of OsGRF6-overexpression lines and an osgrf6 mutant and its complementary lines indicated that OsGRF6 is a negative regulator of chilling tolerance in rice
OsGRF6	Os03g0729500	LOC_Os03g51970	tolerance	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGRF6	Os03g0729500	LOC_Os03g51970	tolerance	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	These results suggest that OsGRF6 is an important regulator in the balance between growth and chilling tolerance in rice
OsGRF6	Os03g0729500	LOC_Os03g51970	ga	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	The yeast one-hybrid, qRT-PCR, and transactivation assays showed that both SLR1 and OsGRF6 can bind to the promoter of the active GA catabolic gene OsGA2ox1, where SLR1 promoted and OsGRF6 suppressed OsGA2ox1 expression
OsGRF6	Os03g0729500	LOC_Os03g51970	ga	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	At normal temperature, OsGRF6 was responsible for maintaining active GA levels by inhibiting OsGA2ox1
OsGRF6	Os03g0729500	LOC_Os03g51970	ga	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGRF6	Os03g0729500	LOC_Os03g51970	chilling	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice
OsGRF6	Os03g0729500	LOC_Os03g51970	chilling	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	After cold treatment and recovery, the survival rates of OsGRF6-overexpression lines and an osgrf6 mutant and its complementary lines indicated that OsGRF6 is a negative regulator of chilling tolerance in rice
OsGRF6	Os03g0729500	LOC_Os03g51970	chilling	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGRF6	Os03g0729500	LOC_Os03g51970	chilling	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	These results suggest that OsGRF6 is an important regulator in the balance between growth and chilling tolerance in rice
OsGRF6	Os03g0729500	LOC_Os03g51970	cold	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	After cold treatment and recovery, the survival rates of OsGRF6-overexpression lines and an osgrf6 mutant and its complementary lines indicated that OsGRF6 is a negative regulator of chilling tolerance in rice
OsGRF6	Os03g0729500	LOC_Os03g51970	chilling stress	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGRF6	Os03g0729500	LOC_Os03g51970	GA	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	The yeast one-hybrid, qRT-PCR, and transactivation assays showed that both SLR1 and OsGRF6 can bind to the promoter of the active GA catabolic gene OsGA2ox1, where SLR1 promoted and OsGRF6 suppressed OsGA2ox1 expression
OsGRF6	Os03g0729500	LOC_Os03g51970	GA	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	At normal temperature, OsGRF6 was responsible for maintaining active GA levels by inhibiting OsGA2ox1
OsGRF6	Os03g0729500	LOC_Os03g51970	GA	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice	When rice seedlings were subjected to chilling stress, the repressive effect of OsGRF6 on OsGA2ox1 was released by cold-induced SLR1, which activated OsGA2ox1 expression to decrease the active GA levels, enhancing chilling tolerance
OsGRF7	Os12g0484900	LOC_Os12g29980	yield	miR396-OsGRFs Module Balances Growth and Rice Blast Disease-Resistance.	 While overexpression of OsGRF7 led to defects in growth, overexpression of OsGRF6, OsGRF8, and OsGRF9 resulted in better or no significant change of yield traits
OsGRF7	Os12g0484900	LOC_Os12g29980	leaf	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Overexpression of OsGRF7 causes a semidwarf and compact plant architecture with an increased culm wall thickness and narrowed leaf angles mediated by shortened cell length, altered cell arrangement, and increased parenchymal cell layers in the culm and adaxial side of the lamina joints
OsGRF7	Os12g0484900	LOC_Os12g29980	auxin	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Here, we report that OsGRF7 shapes plant architecture via the regulation of auxin and gibberellin metabolism in rice
OsGRF7	Os12g0484900	LOC_Os12g29980	auxin	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Further analysis indicated that OsGRF7 binds the ACRGDA motif in the promoters of Cytochrome P450 gene (OsCYP714B1) and AUXIN RESPONSE FACTOR 12 (OsARF12), which are involved in the gibberellin synthesis and auxin signaling pathways, respectively
OsGRF7	Os12g0484900	LOC_Os12g29980	gibberellin	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Here, we report that OsGRF7 shapes plant architecture via the regulation of auxin and gibberellin metabolism in rice
OsGRF7	Os12g0484900	LOC_Os12g29980	gibberellin	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Further analysis indicated that OsGRF7 binds the ACRGDA motif in the promoters of Cytochrome P450 gene (OsCYP714B1) and AUXIN RESPONSE FACTOR 12 (OsARF12), which are involved in the gibberellin synthesis and auxin signaling pathways, respectively
OsGRF7	Os12g0484900	LOC_Os12g29980	culm	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Overexpression of OsGRF7 causes a semidwarf and compact plant architecture with an increased culm wall thickness and narrowed leaf angles mediated by shortened cell length, altered cell arrangement, and increased parenchymal cell layers in the culm and adaxial side of the lamina joints
OsGRF7	Os12g0484900	LOC_Os12g29980	culm	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Knock-out and knock-down lines of OsGRF7 exhibit contrasting phenotypes with severe degradation of parenchymal cells in the culm and lamina joints at maturity
OsGRF7	Os12g0484900	LOC_Os12g29980	architecture	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Here, we report that OsGRF7 shapes plant architecture via the regulation of auxin and gibberellin metabolism in rice
OsGRF7	Os12g0484900	LOC_Os12g29980	architecture	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Overexpression of OsGRF7 causes a semidwarf and compact plant architecture with an increased culm wall thickness and narrowed leaf angles mediated by shortened cell length, altered cell arrangement, and increased parenchymal cell layers in the culm and adaxial side of the lamina joints
OsGRF7	Os12g0484900	LOC_Os12g29980	architecture	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 These findings establish OsGRF7 as a crucial component in the OsmiR396-OsGRF-plant hormone regulatory network that controls rice plant architecture
OsGRF7	Os12g0484900	LOC_Os12g29980	auxin response	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Further analysis indicated that OsGRF7 binds the ACRGDA motif in the promoters of Cytochrome P450 gene (OsCYP714B1) and AUXIN RESPONSE FACTOR 12 (OsARF12), which are involved in the gibberellin synthesis and auxin signaling pathways, respectively
OsGRF7	Os12g0484900	LOC_Os12g29980	lamina	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 OsGRF7 is mainly expressed in lamina joints, nodes, internodes, axillary buds, and young inflorescences
OsGRF7	Os12g0484900	LOC_Os12g29980	lamina	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Overexpression of OsGRF7 causes a semidwarf and compact plant architecture with an increased culm wall thickness and narrowed leaf angles mediated by shortened cell length, altered cell arrangement, and increased parenchymal cell layers in the culm and adaxial side of the lamina joints
OsGRF7	Os12g0484900	LOC_Os12g29980	lamina	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Knock-out and knock-down lines of OsGRF7 exhibit contrasting phenotypes with severe degradation of parenchymal cells in the culm and lamina joints at maturity
OsGRF7	Os12g0484900	LOC_Os12g29980	Gibberellin	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Here, we report that OsGRF7 shapes plant architecture via the regulation of auxin and gibberellin metabolism in rice
OsGRF7	Os12g0484900	LOC_Os12g29980	Gibberellin	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Further analysis indicated that OsGRF7 binds the ACRGDA motif in the promoters of Cytochrome P450 gene (OsCYP714B1) and AUXIN RESPONSE FACTOR 12 (OsARF12), which are involved in the gibberellin synthesis and auxin signaling pathways, respectively
OsGRF7	Os12g0484900	LOC_Os12g29980	plant architecture	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Here, we report that OsGRF7 shapes plant architecture via the regulation of auxin and gibberellin metabolism in rice
OsGRF7	Os12g0484900	LOC_Os12g29980	plant architecture	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Overexpression of OsGRF7 causes a semidwarf and compact plant architecture with an increased culm wall thickness and narrowed leaf angles mediated by shortened cell length, altered cell arrangement, and increased parenchymal cell layers in the culm and adaxial side of the lamina joints
OsGRF7	Os12g0484900	LOC_Os12g29980	plant architecture	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 These findings establish OsGRF7 as a crucial component in the OsmiR396-OsGRF-plant hormone regulatory network that controls rice plant architecture
OsGRF7	Os12g0484900	LOC_Os12g29980	lamina joint	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 OsGRF7 is mainly expressed in lamina joints, nodes, internodes, axillary buds, and young inflorescences
OsGRF7	Os12g0484900	LOC_Os12g29980	lamina joint	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Overexpression of OsGRF7 causes a semidwarf and compact plant architecture with an increased culm wall thickness and narrowed leaf angles mediated by shortened cell length, altered cell arrangement, and increased parenchymal cell layers in the culm and adaxial side of the lamina joints
OsGRF7	Os12g0484900	LOC_Os12g29980	lamina joint	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism 	 Knock-out and knock-down lines of OsGRF7 exhibit contrasting phenotypes with severe degradation of parenchymal cells in the culm and lamina joints at maturity
OsGRF7	Os12g0484900	LOC_Os12g29980	leaf	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 The OsGRF7 has recently been shown involving in modulating leaf angle through regulating GA and IAA metabolism
OsGRF7	Os12g0484900	LOC_Os12g29980	tillering	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 These findings unveil a novel function of OsGRF7 in rice tillering determination
OsGRF7	Os12g0484900	LOC_Os12g29980	tiller	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 Interestingly, we found that OsGRF7 negatively regulates the tiller number
OsGRF7	Os12g0484900	LOC_Os12g29980	tiller	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 However, the detailed molecular mechanisms of OsGRF7 underlying the tiller number determination are still not understood
OsGRF7	Os12g0484900	LOC_Os12g29980	iaa	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 The OsGRF7 has recently been shown involving in modulating leaf angle through regulating GA and IAA metabolism
OsGRF7	Os12g0484900	LOC_Os12g29980	 ga 	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 The OsGRF7 has recently been shown involving in modulating leaf angle through regulating GA and IAA metabolism
OsGRF7	Os12g0484900	LOC_Os12g29980	GA	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 The OsGRF7 has recently been shown involving in modulating leaf angle through regulating GA and IAA metabolism
OsGRF7	Os12g0484900	LOC_Os12g29980	strigolactone	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 Here, we report that OsGRF7 directly targets the promoter of the NODULATION SIGNALING PATHWAY2 (OsNSP2), a key factor involving in the strigolactone synthesis
OsGRF7	Os12g0484900	LOC_Os12g29980	strigolactone	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 Correspondingly, OsGRF7 alters the expression level of OsNSP2 and the endogenous strigolactone content, which rendered repression of the outgrowth of the axillary buds
OsGRF7	Os12g0484900	LOC_Os12g29980	tiller number	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 Interestingly, we found that OsGRF7 negatively regulates the tiller number
OsGRF7	Os12g0484900	LOC_Os12g29980	tiller number	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 However, the detailed molecular mechanisms of OsGRF7 underlying the tiller number determination are still not understood
OsGRF7	Os12g0484900	LOC_Os12g29980	IAA	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 The OsGRF7 has recently been shown involving in modulating leaf angle through regulating GA and IAA metabolism
OsGRF7	Os12g0484900	LOC_Os12g29980	leaf angle	Rice GROWTH-REGULATING FACTOR 7 controls tiller number by regulating strigolactone synthesis	 The OsGRF7 has recently been shown involving in modulating leaf angle through regulating GA and IAA metabolism
OsGRF7	Os12g0484900	LOC_Os12g29980	leaf	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Downstream to GA, OsGRF7 and OsGRF8 function for controlling cell division to determine the rice leaf length
OsGRF7	Os12g0484900	LOC_Os12g29980	leaf	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF7	Os12g0484900	LOC_Os12g29980	cell division	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Downstream to GA, OsGRF7 and OsGRF8 function for controlling cell division to determine the rice leaf length
OsGRF7	Os12g0484900	LOC_Os12g29980	cell division	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF7	Os12g0484900	LOC_Os12g29980	ga	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF7	Os12g0484900	LOC_Os12g29980	GA	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF7	Os12g0484900	LOC_Os12g29980	 ga 	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF8	Os11g0551900	LOC_Os11g35030	leaf	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Downstream to GA, OsGRF7 and OsGRF8 function for controlling cell division to determine the rice leaf length
OsGRF8	Os11g0551900	LOC_Os11g35030	leaf	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF8	Os11g0551900	LOC_Os11g35030	cell division	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Downstream to GA, OsGRF7 and OsGRF8 function for controlling cell division to determine the rice leaf length
OsGRF8	Os11g0551900	LOC_Os11g35030	cell division	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF8	Os11g0551900	LOC_Os11g35030	ga	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF8	Os11g0551900	LOC_Os11g35030	GA	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF8	Os11g0551900	LOC_Os11g35030	 ga 	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	 Spatial control of cell division to determine the division zone size mediated by GA and downstream OsGRF7 and OsGRF8 explains the leaf length differences between the cultivated and wild rice
OsGRF9	Os03g0674700	LOC_Os03g47140	resistance	miR396-OsGRFs Module Balances Growth and Rice Blast Disease-Resistance.	Moreover, transgenic plants overexpressing OsGRF6, OsGRF7, OsGRF8, and OsGRF9 exhibited enhanced resistance to M
OsGRF9	Os03g0674700	LOC_Os03g47140	yield	miR396-OsGRFs Module Balances Growth and Rice Blast Disease-Resistance.	While overexpression of OsGRF7 led to defects in growth, overexpression of OsGRF6, OsGRF8, and OsGRF9 resulted in better or no significant change of yield traits
Osgrp-2|OsGRP2	Os10g0450900	LOC_Os10g31330	development	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation	OsGRP2 participated in establishment of the cellwall network during early tapetum development
Osgrp-2|OsGRP2	Os10g0450900	LOC_Os10g31330	fertility	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation	The tapetal cell walls of an OsGRP2 mutant did not thicken at the pollen mothercell stage, as a result, pollen maturation and fertility rate decreased
Osgrp-2|OsGRP2	Os10g0450900	LOC_Os10g31330	pollen	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation	The tapetal cell walls of an OsGRP2 mutant did not thicken at the pollen mothercell stage, as a result, pollen maturation and fertility rate decreased
Osgrp-2|OsGRP2	Os10g0450900	LOC_Os10g31330	cell wall	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation	The tapetal cell walls of an OsGRP2 mutant did not thicken at the pollen mothercell stage, as a result, pollen maturation and fertility rate decreased
Osgrp-2|OsGRP2	Os10g0450900	LOC_Os10g31330	floral organ	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation	High OsGRP2 expression was detected in male-floral organs, and OsGRP2 was distributed in the tapetum
Osgrp-2|OsGRP2	Os10g0450900	LOC_Os10g31330	tapetum	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation	High OsGRP2 expression was detected in male-floral organs, and OsGRP2 was distributed in the tapetum
Osgrp-2|OsGRP2	Os10g0450900	LOC_Os10g31330	tapetum	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation	OsGRP2 participated in establishment of the cellwall network during early tapetum development
Osgrp-2|OsGRP2	Os10g0450900	LOC_Os10g31330	tapetum	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation	In conclusion, our results indicate that OsGRP2 plays important roles in the differentiation and function of the tapetum
Osgrp-2|OsGRP2	Os10g0450900	LOC_Os10g31330	tapetal	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation	The tapetal cell walls of an OsGRP2 mutant did not thicken at the pollen mothercell stage, as a result, pollen maturation and fertility rate decreased
OsGRP3	Os03g0670700	LOC_Os03g46770	resistance	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).
OsGRP3	Os03g0670700	LOC_Os03g46770	resistance	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Then, the drought tolerance tests of transgenic plants confirmed that OsGRP3 enhanced drought resistance in rice
OsGRP3	Os03g0670700	LOC_Os03g46770	resistance	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Herein, our findings suggested that OsGRP3 enhanced drought resistance in rice by altering the phenylpropanoid biosynthesis pathway and further increasing lignin accumulation
OsGRP3	Os03g0670700	LOC_Os03g46770	drought	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).
OsGRP3	Os03g0670700	LOC_Os03g46770	drought	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Then, the drought tolerance tests of transgenic plants confirmed that OsGRP3 enhanced drought resistance in rice
OsGRP3	Os03g0670700	LOC_Os03g46770	drought	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Herein, our findings suggested that OsGRP3 enhanced drought resistance in rice by altering the phenylpropanoid biosynthesis pathway and further increasing lignin accumulation
OsGRP3	Os03g0670700	LOC_Os03g46770	stress	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 The expression of OsGRP3 was shown to be induced by several abiotic stress treatments and phytohormone treatments
OsGRP3	Os03g0670700	LOC_Os03g46770	tolerance	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Then, the drought tolerance tests of transgenic plants confirmed that OsGRP3 enhanced drought resistance in rice
OsGRP3	Os03g0670700	LOC_Os03g46770	abiotic stress	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 The expression of OsGRP3 was shown to be induced by several abiotic stress treatments and phytohormone treatments
OsGRP3	Os03g0670700	LOC_Os03g46770	drought tolerance	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Then, the drought tolerance tests of transgenic plants confirmed that OsGRP3 enhanced drought resistance in rice
OsGRP3	Os03g0670700	LOC_Os03g46770	biotic stress	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 The expression of OsGRP3 was shown to be induced by several abiotic stress treatments and phytohormone treatments
OsGRP3	Os03g0670700	LOC_Os03g46770	lignin	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Subsequently, the RNA-seq analysis, physiological experiments and histochemical staining showed that OsGRP3 influenced the phenylpropanoid biosynthesis pathway and further modulated lignin accumulation
OsGRP3	Os03g0670700	LOC_Os03g46770	lignin	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Herein, our findings suggested that OsGRP3 enhanced drought resistance in rice by altering the phenylpropanoid biosynthesis pathway and further increasing lignin accumulation
OsGRP3	Os03g0670700	LOC_Os03g46770	phytohormone	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 The expression of OsGRP3 was shown to be induced by several abiotic stress treatments and phytohormone treatments
OsGRP3	Os03g0670700	LOC_Os03g46770	drought resistance	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).
OsGRP3	Os03g0670700	LOC_Os03g46770	drought resistance	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Then, the drought tolerance tests of transgenic plants confirmed that OsGRP3 enhanced drought resistance in rice
OsGRP3	Os03g0670700	LOC_Os03g46770	drought resistance	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).	 Herein, our findings suggested that OsGRP3 enhanced drought resistance in rice by altering the phenylpropanoid biosynthesis pathway and further increasing lignin accumulation
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	tolerance	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	arsenic accumulation	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	transcription factor	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	tolerance	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 Transgenic rice lines overexpressing OsGRX9 and OsbZIP83 showed improved tolerance to iron deficiency
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	salicylic acid	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 OsbZIP83 overexpression lines showed enhanced expression of OsYSL2 and OsNAS3, which are involved in internal iron translocation, in addition to OsGRX9 and genes related to phytoalexin biosynthesis and the salicylic acid pathway
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	iron	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	iron	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 Transgenic rice lines overexpressing OsGRX9 and OsbZIP83 showed improved tolerance to iron deficiency
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	iron	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 Expression of iron-related genes was affected in the OsGRX9 and OsGRX6 knockdown lines, suggesting disturbed iron utilization and signaling
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	iron	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 OsbZIP83 overexpression lines showed enhanced expression of OsYSL2 and OsNAS3, which are involved in internal iron translocation, in addition to OsGRX9 and genes related to phytoalexin biosynthesis and the salicylic acid pathway
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	iron	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 The results suggest that OsbZIP83, OsGRX6 and OsGRX9 facilitate iron utilization downstream of the OsHRZ pathway
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	Ubiquitin	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	N utilization	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	N utilization	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 Expression of iron-related genes was affected in the OsGRX9 and OsGRX6 knockdown lines, suggesting disturbed iron utilization and signaling
OsGrx_C2.1|OsGRX9	Os02g0618100	LOC_Os02g40500	N utilization	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 The results suggest that OsbZIP83, OsGRX6 and OsGRX9 facilitate iron utilization downstream of the OsHRZ pathway
OsGrx_C7	Os01g0368900	LOC_Os01g27140	tolerance	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.
OsGrx_C7	Os01g0368900	LOC_Os01g27140	arsenic accumulation	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.
OsGrx_C7	Os01g0368900	LOC_Os01g27140	root	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Gene expression analysis suggested that OsGrx_C7 expression was induced under salt stress and ubiquitously expressed in rice including root and shoot
OsGrx_C7	Os01g0368900	LOC_Os01g27140	root	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	A gain-of-function approach showed that OsGrx_C7 may act as an important determinant in salt stress, compared with WT, and revealed higher biomass accumulation, improved root and plant growth under salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	growth	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	A gain-of-function approach showed that OsGrx_C7 may act as an important determinant in salt stress, compared with WT, and revealed higher biomass accumulation, improved root and plant growth under salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	shoot	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Gene expression analysis suggested that OsGrx_C7 expression was induced under salt stress and ubiquitously expressed in rice including root and shoot
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Gene expression analysis, silencing, and overexpression of OsGrx_C7 gene were used to discover the role of OsGrx_C7 in response to salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Gene expression analysis suggested that OsGrx_C7 expression was induced under salt stress and ubiquitously expressed in rice including root and shoot
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	The silencing of osgrx_c7 gene leads to increased sensitivity to salt stress, indicating its importance in salt stress tolerance
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	A gain-of-function approach showed that OsGrx_C7 may act as an important determinant in salt stress, compared with WT, and revealed higher biomass accumulation, improved root and plant growth under salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Under salt stress condition, OsGrx_C7 overexpressing rice plants showed lower level of lipid peroxidation and Na+/K+ ratio, while proline accumulation, soluble sugar content and GSH/GSSG ratio was higher compared to WT
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Furthermore, expression analysis suggested that OsGrx_C7 acted as positive regulator of salt tolerance by reinforcing the expression of transporters (OsHKT2;1, OsHKT1;5 and OsSOS1) engaged in Na+ homeostasis in overexpressing plants
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Overall our study revealed that OsGrx_C7 emerged as a key mediator in response to salt stress in rice and could be used for engineering tolerance against salt stress in rice and other crops
OsGrx_C7	Os01g0368900	LOC_Os01g27140	tolerance	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	The silencing of osgrx_c7 gene leads to increased sensitivity to salt stress, indicating its importance in salt stress tolerance
OsGrx_C7	Os01g0368900	LOC_Os01g27140	tolerance	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Furthermore, expression analysis suggested that OsGrx_C7 acted as positive regulator of salt tolerance by reinforcing the expression of transporters (OsHKT2;1, OsHKT1;5 and OsSOS1) engaged in Na+ homeostasis in overexpressing plants
OsGrx_C7	Os01g0368900	LOC_Os01g27140	tolerance	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Overall our study revealed that OsGrx_C7 emerged as a key mediator in response to salt stress in rice and could be used for engineering tolerance against salt stress in rice and other crops
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt tolerance	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Furthermore, expression analysis suggested that OsGrx_C7 acted as positive regulator of salt tolerance by reinforcing the expression of transporters (OsHKT2;1, OsHKT1;5 and OsSOS1) engaged in Na+ homeostasis in overexpressing plants
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Gene expression analysis, silencing, and overexpression of OsGrx_C7 gene were used to discover the role of OsGrx_C7 in response to salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Gene expression analysis suggested that OsGrx_C7 expression was induced under salt stress and ubiquitously expressed in rice including root and shoot
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	The silencing of osgrx_c7 gene leads to increased sensitivity to salt stress, indicating its importance in salt stress tolerance
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	A gain-of-function approach showed that OsGrx_C7 may act as an important determinant in salt stress, compared with WT, and revealed higher biomass accumulation, improved root and plant growth under salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Under salt stress condition, OsGrx_C7 overexpressing rice plants showed lower level of lipid peroxidation and Na+/K+ ratio, while proline accumulation, soluble sugar content and GSH/GSSG ratio was higher compared to WT
OsGrx_C7	Os01g0368900	LOC_Os01g27140	salt stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Overall our study revealed that OsGrx_C7 emerged as a key mediator in response to salt stress in rice and could be used for engineering tolerance against salt stress in rice and other crops
OsGrx_C7	Os01g0368900	LOC_Os01g27140	stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice
OsGrx_C7	Os01g0368900	LOC_Os01g27140	stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Gene expression analysis, silencing, and overexpression of OsGrx_C7 gene were used to discover the role of OsGrx_C7 in response to salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Gene expression analysis suggested that OsGrx_C7 expression was induced under salt stress and ubiquitously expressed in rice including root and shoot
OsGrx_C7	Os01g0368900	LOC_Os01g27140	stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	The silencing of osgrx_c7 gene leads to increased sensitivity to salt stress, indicating its importance in salt stress tolerance
OsGrx_C7	Os01g0368900	LOC_Os01g27140	stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	A gain-of-function approach showed that OsGrx_C7 may act as an important determinant in salt stress, compared with WT, and revealed higher biomass accumulation, improved root and plant growth under salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Under salt stress condition, OsGrx_C7 overexpressing rice plants showed lower level of lipid peroxidation and Na+/K+ ratio, while proline accumulation, soluble sugar content and GSH/GSSG ratio was higher compared to WT
OsGrx_C7	Os01g0368900	LOC_Os01g27140	stress	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Overall our study revealed that OsGrx_C7 emerged as a key mediator in response to salt stress in rice and could be used for engineering tolerance against salt stress in rice and other crops
OsGrx_C7	Os01g0368900	LOC_Os01g27140	homeostasis	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Furthermore, expression analysis suggested that OsGrx_C7 acted as positive regulator of salt tolerance by reinforcing the expression of transporters (OsHKT2;1, OsHKT1;5 and OsSOS1) engaged in Na+ homeostasis in overexpressing plants
OsGrx_C7	Os01g0368900	LOC_Os01g27140	plant growth	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	A gain-of-function approach showed that OsGrx_C7 may act as an important determinant in salt stress, compared with WT, and revealed higher biomass accumulation, improved root and plant growth under salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	biomass	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	A gain-of-function approach showed that OsGrx_C7 may act as an important determinant in salt stress, compared with WT, and revealed higher biomass accumulation, improved root and plant growth under salt stress
OsGrx_C7	Os01g0368900	LOC_Os01g27140	sugar	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	Under salt stress condition, OsGrx_C7 overexpressing rice plants showed lower level of lipid peroxidation and Na+/K+ ratio, while proline accumulation, soluble sugar content and GSH/GSSG ratio was higher compared to WT
OsGrx_C7	Os01g0368900	LOC_Os01g27140	stress tolerance	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	The silencing of osgrx_c7 gene leads to increased sensitivity to salt stress, indicating its importance in salt stress tolerance
OsGrx|OsGrxC2;2|OsGrxC2.2	Os04g0508300	LOC_Os04g42930	oxidative	GSH-dependent peroxidase activity of the rice (Oryza sativa) glutaredoxin, a thioltransferase	Because of this antioxidant activity, OsGrx protects glutamine synthetase from oxidative damage
OsGrx10	Os02g0646400	LOC_Os02g43180	tolerance	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsGrx10	Os02g0646400	LOC_Os02g43180	cold stress	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsGrx10	Os02g0646400	LOC_Os02g43180	stress	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsGrx10	Os02g0646400	LOC_Os02g43180	stress tolerance	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsGrx10	Os02g0646400	LOC_Os02g43180	calcium	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	Together, our results suggest that OsCPK24 functions as a positive regulator of cold stress tolerance in rice, a process mediated by calcium signaling and involving phosphorylation and the inhibition of OsGrx10 to sustain higher glutathione levels
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	cell cycle	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	Furthermore, analysis of mil1 msp1 double mutants reveals that due to the absence of MIL1, the cells in their anther locule center do not activate meiotic cell cycle either, generating a similar anther phenotype to mil1
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	pollen	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	We show here that plant pollen mother cells contain a specific meiosis initiation machinery through characterization of a rice (Oryza sativa) gene, MICROSPORELESS1 (MIL1)
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	fertility	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	The mil1 mutant does not produce microspores in anthers but has the normal female fertility
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	microspore	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	We show here that plant pollen mother cells contain a specific meiosis initiation machinery through characterization of a rice (Oryza sativa) gene, MICROSPORELESS1 (MIL1)
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	microspore	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	The mil1 mutant does not produce microspores in anthers but has the normal female fertility
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	microspore	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	Detailed molecular and cytological investigations demonstrate that mil1 anthers are defective in the meiotic entry of sporogenous cell progenies and in the differentiation of surrounding somatic cell layers, resulting in locules filled with somatic cells instead of microspores
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	meiotic	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	Detailed molecular and cytological investigations demonstrate that mil1 anthers are defective in the meiotic entry of sporogenous cell progenies and in the differentiation of surrounding somatic cell layers, resulting in locules filled with somatic cells instead of microspores
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	meiotic	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	Furthermore, analysis of mil1 msp1 double mutants reveals that due to the absence of MIL1, the cells in their anther locule center do not activate meiotic cell cycle either, generating a similar anther phenotype to mil1
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	meiotic	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	These results suggest meiotic entry in microsporocytes is directed by an anther-specific mechanism, which requires MIL1 activity, and redox regulation might play important roles in this process
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	meiosis	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	We show here that plant pollen mother cells contain a specific meiosis initiation machinery through characterization of a rice (Oryza sativa) gene, MICROSPORELESS1 (MIL1)
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	anther	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	The mil1 mutant does not produce microspores in anthers but has the normal female fertility
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	anther	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	Detailed molecular and cytological investigations demonstrate that mil1 anthers are defective in the meiotic entry of sporogenous cell progenies and in the differentiation of surrounding somatic cell layers, resulting in locules filled with somatic cells instead of microspores
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	anther	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	Furthermore, analysis of mil1 msp1 double mutants reveals that due to the absence of MIL1, the cells in their anther locule center do not activate meiotic cell cycle either, generating a similar anther phenotype to mil1
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	anther	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	These results suggest meiotic entry in microsporocytes is directed by an anther-specific mechanism, which requires MIL1 activity, and redox regulation might play important roles in this process
OsGRX19|MIL1	Os07g0151100	LOC_Os07g05630	transcription factor	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin	MIL1 encodes a plant-specific CC-type glutaredoxin, which could interact with TGA transcription factors
OsGRX20	Os08g0558200	LOC_Os08g44400	resistance	A Rice CPYC-Type GlutaredoxinOsGRX20in Protection against Bacterial Blight, Methyl Viologen and Salt Stresses.	Our results demonstrate that OsGRX20 functioned as a positive regulator in rice tolerance to multiple stresses, which may be of significant use in the genetic improvement of rice resistance
OsGRX20	Os08g0558200	LOC_Os08g44400	tolerance	A Rice CPYC-Type GlutaredoxinOsGRX20in Protection against Bacterial Blight, Methyl Viologen and Salt Stresses.	Our results demonstrate that OsGRX20 functioned as a positive regulator in rice tolerance to multiple stresses, which may be of significant use in the genetic improvement of rice resistance
OsGRX20	Os08g0558200	LOC_Os08g44400	nucleus	A Rice CPYC-Type GlutaredoxinOsGRX20in Protection against Bacterial Blight, Methyl Viologen and Salt Stresses.	OsGRX20 protein was localized in nucleus and cytosol, and its transcripts were expressed predominantly in leaves
OsGRX6	Os01g0667900	LOC_Os01g47760	nitrogen	Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.	Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.
OsGRX6	Os01g0667900	LOC_Os01g47760	nitrogen	Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.	The OsGRX6 overexpressors contain a higher nitrogen content than the wild type, indicating that OsGRX6 plays a role in homeostatic regulation of nitrogen use
OsGRX6	Os01g0667900	LOC_Os01g47760	nitrogen	Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.	These data suggest that OsGRX6 affects hormone signaling and nitrogen status in rice plants
OsGRX6	Os01g0667900	LOC_Os01g47760	senescence	Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.	Consistent with this, OsGRX6 overexpressors displayed delayed chlorophyll degradation and senescence compared to the wild type plants
OsGRX6	Os01g0667900	LOC_Os01g47760	nitrate	Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.	The rice CC-type proteins, OsGRX6 was identified during the screening for genes whose expression changes depending on the level of available nitrate
OsGRX8	Os02g0512400	LOC_Os02g30850	abiotic stress	Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses	Here, we report the role of a CC-type GRX gene from rice, OsGRX8, in abiotic stress tolerance
OsGRX8	Os02g0512400	LOC_Os02g30850	abiotic stress	Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses	Further, the transgenic RNAi rice plants exhibited increased susceptibility to various abiotic stresses, which further confirmed the role of OsGRX8 in abiotic stress responses
OsGRX8	Os02g0512400	LOC_Os02g30850	abiotic stress	Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses	Altogether, these findings suggest the role of OsGRX8 in regulating abiotic stress response and may be used to engineer stress tolerance in crop plants
OsGRX8	Os02g0512400	LOC_Os02g30850	auxin	Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses	OsGRX8 protein was found to be localized in nucleus and cytosol and its gene expression is induced by various stress conditions and plant hormone auxin
OsGRX8	Os02g0512400	LOC_Os02g30850	auxin	Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses	The over-expression of OsGRX8 in Arabidopsis plants conferred reduced sensitivity to auxin and stress hormone, abscisic acid
OsGRXS15	Os01g0530400	LOC_Os01g34620	transcription factor	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	The rice transcription factor OsWRKY65 was identified as a binding partner, and it directly interacted with OsGRXS15 in the nucleus
OsGRXS15	Os01g0530400	LOC_Os01g34620	transcription factor	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	These results suggested that OsGRXS15 interacts with transcription factors, and it confers BSR through regulating the expression of genes related to pathogen response
OsGRXS15	Os01g0530400	LOC_Os01g34620	resistance	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	Transgenic rice lines constitutively expressing OsGRXS15 showed enhanced disease resistance to Xoo and F
OsGRXS15	Os01g0530400	LOC_Os01g34620	disease	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	Transgenic rice lines constitutively expressing OsGRXS15 showed enhanced disease resistance to Xoo and F
OsGRXS15	Os01g0530400	LOC_Os01g34620	disease resistance	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	Transgenic rice lines constitutively expressing OsGRXS15 showed enhanced disease resistance to Xoo and F
OsGRXS15	Os01g0530400	LOC_Os01g34620	pathogen	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	These results suggested that OsGRXS15 interacts with transcription factors, and it confers BSR through regulating the expression of genes related to pathogen response
OsGRXS15	Os01g0530400	LOC_Os01g34620	nucleus	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	The rice transcription factor OsWRKY65 was identified as a binding partner, and it directly interacted with OsGRXS15 in the nucleus
OsGRXS15	Os01g0530400	LOC_Os01g34620	xoo	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	Transgenic rice lines constitutively expressing OsGRXS15 showed enhanced disease resistance to Xoo and F
OsGRXS17	Os10g0500700	LOC_Os10g35720	drought	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.
OsGRXS17	Os10g0500700	LOC_Os10g35720	drought	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Gene expression studies showed that OsGRXS17 was present throughout the plant and that transcript abundance increased in response to drought stress and abscisic acid (ABA) treatment
OsGRXS17	Os10g0500700	LOC_Os10g35720	drought	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Under drought stress conditions, rice plants with reduced OsGRXS17 expression showed lower rates of water loss and stomatal conductance, higher relative water content, and enhanced survival compared to wild-type controls
OsGRXS17	Os10g0500700	LOC_Os10g35720	tolerance	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.
OsGRXS17	Os10g0500700	LOC_Os10g35720	stress	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.
OsGRXS17	Os10g0500700	LOC_Os10g35720	stress	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Gene expression studies showed that OsGRXS17 was present throughout the plant and that transcript abundance increased in response to drought stress and abscisic acid (ABA) treatment
OsGRXS17	Os10g0500700	LOC_Os10g35720	stress	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Under drought stress conditions, rice plants with reduced OsGRXS17 expression showed lower rates of water loss and stomatal conductance, higher relative water content, and enhanced survival compared to wild-type controls
OsGRXS17	Os10g0500700	LOC_Os10g35720	cytoplasm	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Localization studies, utilizing GFP-OsGRXS17 fusion proteins, indicated that OsGRXS17 resides in both the cytoplasm and the nuclear envelope
OsGRXS17	Os10g0500700	LOC_Os10g35720	stomatal	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.
OsGRXS17	Os10g0500700	LOC_Os10g35720	stomatal	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Under drought stress conditions, rice plants with reduced OsGRXS17 expression showed lower rates of water loss and stomatal conductance, higher relative water content, and enhanced survival compared to wild-type controls
OsGRXS17	Os10g0500700	LOC_Os10g35720	stomatal	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Further characterization of the OsGRXS17 down-regulated plants revealed an elevation in H2O2 production within the guard cells, increased sensitivity to ABA, and a reduction in stomatal apertures
OsGRXS17	Os10g0500700	LOC_Os10g35720	water loss	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Under drought stress conditions, rice plants with reduced OsGRXS17 expression showed lower rates of water loss and stomatal conductance, higher relative water content, and enhanced survival compared to wild-type controls
OsGRXS17	Os10g0500700	LOC_Os10g35720	drought stress	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.
OsGRXS17	Os10g0500700	LOC_Os10g35720	drought stress	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Gene expression studies showed that OsGRXS17 was present throughout the plant and that transcript abundance increased in response to drought stress and abscisic acid (ABA) treatment
OsGRXS17	Os10g0500700	LOC_Os10g35720	drought stress	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Under drought stress conditions, rice plants with reduced OsGRXS17 expression showed lower rates of water loss and stomatal conductance, higher relative water content, and enhanced survival compared to wild-type controls
OsGRXS17	Os10g0500700	LOC_Os10g35720	drought stress	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.
OsGRXS17	Os10g0500700	LOC_Os10g35720	drought stress	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Gene expression studies showed that OsGRXS17 was present throughout the plant and that transcript abundance increased in response to drought stress and abscisic acid (ABA) treatment
OsGRXS17	Os10g0500700	LOC_Os10g35720	drought stress	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Under drought stress conditions, rice plants with reduced OsGRXS17 expression showed lower rates of water loss and stomatal conductance, higher relative water content, and enhanced survival compared to wild-type controls
OsGRXS17	Os10g0500700	LOC_Os10g35720	abscisic acid	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Gene expression studies showed that OsGRXS17 was present throughout the plant and that transcript abundance increased in response to drought stress and abscisic acid (ABA) treatment
OsGRXS17	Os10g0500700	LOC_Os10g35720	stress tolerance	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	stem	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	Following WD, OsGS1;1 mRNA level in stem and root tissues declined in IR-64 and enhanced in Khitish
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	seed	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	leaf	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice	Overaccumulation of free ammonium in the leaf sheath and roots of the mutant indicated the importance of OsGS1;1 for ammonium assimilation in both organs
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	nitrogen	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	drought	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	OsGS1;1 and OsGS2 were differentially regulated in IR-64 (drought-sensitive) and Khitish (drought-tolerant) cultivars of rice
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	drought	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	Results suggest that OsGS2 and OsGS1;1 expression may contribute to drought tolerance of Khitish cultivar under WD conditions
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	root	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	Following WD, OsGS1;1 mRNA level in stem and root tissues declined in IR-64 and enhanced in Khitish
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	root	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	A steady OsGS1;2 expression patterns were noted in leaf, stem and root of both the cultivars
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	leaf	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	A steady OsGS1;2 expression patterns were noted in leaf, stem and root of both the cultivars
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	root	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	OsGS1;1 was expressed in all organs tested with higher expression in leaf blades, while OsGS1;2, and OsGS1;3 were expressed mainly in roots and spikelets, respectively
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	growth	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice	Of the three genes encoding cytosolic GS in rice, OsGS1;1 is critical for normal growth and grain filling
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	spikelet	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	OsGS1;1 was expressed in all organs tested with higher expression in leaf blades, while OsGS1;2, and OsGS1;3 were expressed mainly in roots and spikelets, respectively
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	growth	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	sheath	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice	Overaccumulation of free ammonium in the leaf sheath and roots of the mutant indicated the importance of OsGS1;1 for ammonium assimilation in both organs
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	nitrogen	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice	These results demonstrated a crucial function of OsGS1;1 in coordinating the global metabolic network in rice plants grown using ammonium as the nitrogen source
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	leaf	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	GS1 transcript and polypeptide accumulated in leaf during WD, however, GS1 activity was maintained at a constant level
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	root	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice	Overaccumulation of free ammonium in the leaf sheath and roots of the mutant indicated the importance of OsGS1;1 for ammonium assimilation in both organs
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	root	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	Among the three isoenzymes of the cytosolic GS1 gene family in rice, OsGLN1;1 and OsGLN1;2 were abundantly expressed in roots
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	root	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	The OsGLN1;1 and OsGLN1;2 transcripts showed reciprocal responses to ammonium supply in the surface cell layers of roots
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	root	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	The high-capacity Gln synthetic activities of OsGLN1;1 and OsGLN1;2 facilitate active ammonium assimilation in specific cell types in rice roots
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	root	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	Low-affinity forms of GS1 comparable to those in Arabidopsis (GLN1;2 and GLN1;3) were absent in rice roots
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	leaf	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	OsGS1;1 was expressed in all organs tested with higher expression in leaf blades, while OsGS1;2, and OsGS1;3 were expressed mainly in roots and spikelets, respectively
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	chloroplast	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	Rice plants possess one gene (OsGS2) for chloroplastic GS2 and three genes (OsGS1;1, OsGS1;2 and OsGS1;3) for cytosolic GS1
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	stem	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	A steady OsGS1;2 expression patterns were noted in leaf, stem and root of both the cultivars
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain filling	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen	In both the genotypes, both increase and decline in seed protein contents matched with the expressions levels of OsAMT1;1, OsGS1;1 and OsGS1;2 in the flag leaves during grain filling stage indicating that high nitrogen nutrition in KN3119 probably causes the repression of these genes which might be important during grain filling
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	leaf	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	Abnormal mRNA for GS1;1 was transcribed, and the GS1 protein and its activity in the leaf blades were barely detectable in these mutants
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	nitrogen	Mapping of QTLs associated with cytosolic glutamine synthetase and NADH-glutamate synthase in rice (Oryza sativa L.)	These findings suggested that the variation in GS1 and NADH‐GOGAT protein contents in this population is related to the changes in the rate of nitrogen recycling from senescing organs to developing organs, leading to changes in these physiological traits
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	nitrogen	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	OsGLN1;1 accumulated in dermatogen, epidermis and exodermis under nitrogen-limited condition
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	nitrogen	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots	By contrast, OsGLN1;2 was abundantly expressed in the same cell layers under nitrogen-sufficient conditions, replenishing the loss of OsGLN1;1 following ammonium treatment
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	drought tolerance	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	Results suggest that OsGS2 and OsGS1;1 expression may contribute to drought tolerance of Khitish cultivar under WD conditions
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain filling	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	The results indicate that GS1;1 is important for normal growth and grain filling in rice; GS1;2 and GS1;3 were not able to compensate for GS1;1 function
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain filling	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	The results indicate that GS1;1 is important for normal growth and grain filling in rice; GS1;2 and GS1;3 were not able to compensate for GS1;1 function
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice	Of the three genes encoding cytosolic GS in rice, OsGS1;1 is critical for normal growth and grain filling
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	leaf	Identification and characterization of a QTL on chromosome 2 for cytosolic glutamine synthetase content and panicle number in rice	C-22 showed a 12-37% lower content of GS1 protein in leaf blades than Koshihikari, which was in good agreement with a QTL region positively affected by the japonica chromosome
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	cadmium	Overexpression of the glutamine synthetase gene modulates oxidative stress response in rice after exposure to cadmium stress	KEY MESSAGE: Overexpression of OsGS gene modulates oxidative stress response in rice after exposure to cadmium stress
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	oxidative	Overexpression of the glutamine synthetase gene modulates oxidative stress response in rice after exposure to cadmium stress	KEY MESSAGE: Overexpression of OsGS gene modulates oxidative stress response in rice after exposure to cadmium stress
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain filling	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice	Of the three genes encoding cytosolic GS in rice, OsGS1;1 is critical for normal growth and grain filling
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	growth	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	The results indicate that GS1;1 is important for normal growth and grain filling in rice; GS1;2 and GS1;3 were not able to compensate for GS1;1 function
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	seedling	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	salinity	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	tolerance	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	tolerance	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	tolerance	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	abiotic stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	abiotic stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	Al tolerance	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	biotic stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	biotic stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	salinity stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	 Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	transcription factor	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 GOLDEN2-LIKE transcription factor-encoding genes, which are involved in chloroplast biogenesis in rice, could not compensate for the lack of OsSIGs in the Osgs1;1 mutant
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	chloroplast	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 GOLDEN2-LIKE transcription factor-encoding genes, which are involved in chloroplast biogenesis in rice, could not compensate for the lack of OsSIGs in the Osgs1;1 mutant
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	chloroplast	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 Microscopic analysis revealed mature chloroplast development in Osgs1;1 roots but not in the roots of Osgs1;2, Osgs1;2-complemented lines, or the wildtype
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	development	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 Microscopic analysis revealed mature chloroplast development in Osgs1;1 roots but not in the roots of Osgs1;2, Osgs1;2-complemented lines, or the wildtype
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	development	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 Thus, organic N assimilated by OsGS1;1 affects a broad range of metabolites and transcripts involved in maintaining metabolic homeostasis and plastid development in rice roots, whereas OsGS1;2 has a more specific role, affecting mainly amino acid homeostasis but not C metabolism
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	photosynthesis	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 We observed (i) abnormal sugar and organic N accumulation and (ii) significant upregulation of genes associated with photosynthesis and chlorophyll biosynthesis in the roots of Osgs1;1 but not Osgs1;2 knockout mutants
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	homeostasis	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 Thus, organic N assimilated by OsGS1;1 affects a broad range of metabolites and transcripts involved in maintaining metabolic homeostasis and plastid development in rice roots, whereas OsGS1;2 has a more specific role, affecting mainly amino acid homeostasis but not C metabolism
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	chloroplast development	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 Microscopic analysis revealed mature chloroplast development in Osgs1;1 roots but not in the roots of Osgs1;2, Osgs1;2-complemented lines, or the wildtype
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	sugar	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 We observed (i) abnormal sugar and organic N accumulation and (ii) significant upregulation of genes associated with photosynthesis and chlorophyll biosynthesis in the roots of Osgs1;1 but not Osgs1;2 knockout mutants
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	sugar	Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots.	 Network analysis of the Osgs1;1 mutant suggested that metabolism of glutamine was coordinated with the metabolic modules of sugar metabolism, tricarboxylic acid cycle, and carbon (C) fixation
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain	Alternative splicing of OsGS1;1 affects nitrogen-use efficiency, grain development, and amylose content in rice.	Alternative splicing of OsGS1;1 affects nitrogen-use efficiency, grain development, and amylose content in rice.
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	grain	Alternative splicing of OsGS1;1 affects nitrogen-use efficiency, grain development, and amylose content in rice.	 The elite haplotype of OsGS1;1 showed high OsGS1;1b activity, which improved NUE, affected grain development, and reduced amylose content
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	amylose content	Alternative splicing of OsGS1;1 affects nitrogen-use efficiency, grain development, and amylose content in rice.	Alternative splicing of OsGS1;1 affects nitrogen-use efficiency, grain development, and amylose content in rice.
OsGS|OsGS1|GS1|OsGS1;1|OsGLN1;1	Os02g0735200	LOC_Os02g50240	amylose content	Alternative splicing of OsGS1;1 affects nitrogen-use efficiency, grain development, and amylose content in rice.	 The elite haplotype of OsGS1;1 showed high OsGS1;1b activity, which improved NUE, affected grain development, and reduced amylose content
OsGS1;3|OsGLN1;3	Os03g0712800	LOC_Os03g50490	root	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	OsGS1;1 was expressed in all organs tested with higher expression in leaf blades, while OsGS1;2, and OsGS1;3 were expressed mainly in roots and spikelets, respectively
OsGS1;3|OsGLN1;3	Os03g0712800	LOC_Os03g50490	spikelet	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	OsGS1;1 was expressed in all organs tested with higher expression in leaf blades, while OsGS1;2, and OsGS1;3 were expressed mainly in roots and spikelets, respectively
OsGS1;3|OsGLN1;3	Os03g0712800	LOC_Os03g50490	leaf	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1	OsGS1;1 was expressed in all organs tested with higher expression in leaf blades, while OsGS1;2, and OsGS1;3 were expressed mainly in roots and spikelets, respectively
OsGS1;3|OsGLN1;3	Os03g0712800	LOC_Os03g50490	grain ripening	Cytosolic Glutamine Synthetase GS1;3 Is Involved in Rice Grain Ripening and Germination	Cytosolic Glutamine Synthetase GS1;3 Is Involved in Rice Grain Ripening and Germination
OsGS1;3|OsGLN1;3	Os03g0712800	LOC_Os03g50490	seed germination	Cytosolic Glutamine Synthetase GS1;3 Is Involved in Rice Grain Ripening and Germination	Cytosolic Glutamine Synthetase GS1;3 Is Involved in Rice Grain Ripening and Germination
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	drought tolerance	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	Results suggest that OsGS2 and OsGS1;1 expression may contribute to drought tolerance of Khitish cultivar under WD conditions
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	salt stress	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	Salt stress clearly up-regulated the expression of OsGDH2 and OsGDH3 in old leaves, while strongly down-regulated expression of OsGS2 and OsFd-GOGAT in old leaves
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	salt stress	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	This might influence photorespiration process, reduce NH4+ production from photorespiration, and immediately down-regulate the expression of OsGS2 and OsFd-GOGAT in old leaves of salt stressed rice
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	drought	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	OsGS1;1 and OsGS2 were differentially regulated in IR-64 (drought-sensitive) and Khitish (drought-tolerant) cultivars of rice
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	drought	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	Results suggest that OsGS2 and OsGS1;1 expression may contribute to drought tolerance of Khitish cultivar under WD conditions
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	chloroplast	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions	Rice plants possess one gene (OsGS2) for chloroplastic GS2 and three genes (OsGS1;1, OsGS1;2 and OsGS1;3) for cytosolic GS1
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	salt	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	Salt stress clearly up-regulated the expression of OsGDH2 and OsGDH3 in old leaves, while strongly down-regulated expression of OsGS2 and OsFd-GOGAT in old leaves
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	salt	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	This might influence photorespiration process, reduce NH4+ production from photorespiration, and immediately down-regulate the expression of OsGS2 and OsFd-GOGAT in old leaves of salt stressed rice
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	seedling	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	salinity	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	tolerance	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	tolerance	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	tolerance	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	abiotic stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	abiotic stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	Al tolerance	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	biotic stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	biotic stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes
OsGS2|lambdaGS31	Os04g0659100	LOC_Os04g56400	salinity stress	Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice (Oryza sativa L.): Impact on Tolerance to Abiotic Stresses.	Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage
OsGSK1	Os01g0205700	LOC_Os01g10840	abiotic stress	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses
OsGSK1	Os01g0205700	LOC_Os01g10840	floral	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses	Therefore, we propose that stress-responsive OsGSK1 may have physiological roles in stress signal-transduction pathways and floral developmental processes
OsGSK1	Os01g0205700	LOC_Os01g10840	growth	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses	Overexpression of the full-length OsGSK1 led to a stunted growth phenotype similar to the one observed with the gain-of-function BIN/AtSK21 mutant
OsGSK1	Os01g0205700	LOC_Os01g10840	brassinosteroid	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses	The gene responsible for this GUS-positive phenotype was revealed by inverse PCR as OsGSK1 (Oryza sativa glycogen synthase kinase3-like gene 1), a member of the plant GSK3/SHAGGY-like protein kinase genes and an orthologue of the Arabidopsis brassinosteroid insensitive 2 (BIN2), AtSK21
OsGSK1	Os01g0205700	LOC_Os01g10840	brassinosteroid	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses	This suggests that OsGSK1 might be a functional rice orthologue that serves as a negative regulator of brassinosteroid (BR)-signaling
OsGSK1	Os01g0205700	LOC_Os01g10840	panicle	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses	Northern blot analysis showed that OsGSK1 was most highly detected in the developing panicles, suggesting that its expression is developmental stage specific
OsGSK1	Os01g0205700	LOC_Os01g10840	drought	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses	Knockout (KO) mutants of OsGSK1 showed enhanced tolerance to cold, heat, salt, and drought stresses when compared with non-transgenic segregants (NT)
OsGSK1	Os01g0205700	LOC_Os01g10840	salt	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses	Knockout (KO) mutants of OsGSK1 showed enhanced tolerance to cold, heat, salt, and drought stresses when compared with non-transgenic segregants (NT)
OsGSK3	Os02g0236200	LOC_Os02g14130	brassinosteroid	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.
OsGSK3	Os02g0236200	LOC_Os02g14130	BR	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.	Knocking-out of OsGSK3 enhances BR signaling and induces nuclear localization of Oryza sativa BRASSINAZOLE RESISTANT1 (OsBZR1)
OsGSK3	Os02g0236200	LOC_Os02g14130	Brassinosteroid	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.
OsGSK3	Os02g0236200	LOC_Os02g14130	Kinase	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.
OsGSK3	Os02g0236200	LOC_Os02g14130	BR signaling	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.	Knocking-out of OsGSK3 enhances BR signaling and induces nuclear localization of Oryza sativa BRASSINAZOLE RESISTANT1 (OsBZR1)
OsGSK3	Os02g0236200	LOC_Os02g14130	Brassinosteroid Signaling	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	BR	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	The yeast two-hybrid assay revealed that OsGSR1 interacts with DIM/DWF1, an enzyme that catalyzes the conversion from 24-methylenecholesterol to campesterol in BR biosynthesis
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	BR	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	These results suggest that OsGSR1 activates BR synthesis by directly regulating a BR biosynthetic enzyme at the post-translational level
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	BR	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	These results demonstrate that OsGSR1 plays important roles in both BR and GA pathways, and also mediates an interaction between the two signaling pathways
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	root	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	RNA interference (RNAi) transgenic rice plants with reduced OsGSR1 expression show phenotypes similar to plants deficient in BR, including short primary roots, erect leaves and reduced fertility
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	brassinosteroid	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	ga	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	Here, we demonstrate that OsGSR1, a member of the GAST (GA-stimulated transcript) gene family, is induced by GA and repressed by BR
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	ga	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	Furthermore, OsGSR1 RNAi plants show a reduced sensitivity to GA treatment, an increased expression of the GA biosynthetic gene OsGA20ox2, which is feedback inhibited by GA signaling, and an elevated level of endogenous GA: together, these suggest that OsGSR1 is a positive regulator of GA signaling
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	ga	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	These results demonstrate that OsGSR1 plays important roles in both BR and GA pathways, and also mediates an interaction between the two signaling pathways
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	fertility	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	RNA interference (RNAi) transgenic rice plants with reduced OsGSR1 expression show phenotypes similar to plants deficient in BR, including short primary roots, erect leaves and reduced fertility
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	ethylene	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	The yeast two-hybrid assay revealed that OsGSR1 interacts with DIM/DWF1, an enzyme that catalyzes the conversion from 24-methylenecholesterol to campesterol in BR biosynthesis
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	dwarf	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	The OsGSR1 RNAi transgenic rice shows a reduced level of endogenous BR, and the dwarf phenotype could be rescued by the application of brassinolide
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	primary root	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	RNA interference (RNAi) transgenic rice plants with reduced OsGSR1 expression show phenotypes similar to plants deficient in BR, including short primary roots, erect leaves and reduced fertility
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	gibberellin	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	erect	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	RNA interference (RNAi) transgenic rice plants with reduced OsGSR1 expression show phenotypes similar to plants deficient in BR, including short primary roots, erect leaves and reduced fertility
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	panicle	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	GW6 is highly expressed in the young panicle and increases grain width by promoting cell expansion in the spikelet hull
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	panicle	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	GW6 is induced by GA and its knockout down-regulates the expression of GA biosynthesis genes and decreases GA contents in the young panicle
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	spikelet	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	GW6 is highly expressed in the young panicle and increases grain width by promoting cell expansion in the spikelet hull
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	Here, we report the cloning and characterization of a QTL, GW6 (GRAIN WIDTH 6), which encodes a gibberellin-regulated GAST family protein and positively regulates grain width and weight
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	GW6 is highly expressed in the young panicle and increases grain width by promoting cell expansion in the spikelet hull
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	The knockout of GW6 exhibits reduced grain size and weight, whereas the overexpression of GW6 results in increased grain size and weight
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	We found that a natural variation in the cis element CAAT-box in the promoter of GW6 is associated with its expression level and grain width and weight
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	44% increase in rice grain yield, indicating that GW6 has great potential to improve grain yield in rice
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	gibberellin	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain yield	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	44% increase in rice grain yield, indicating that GW6 has great potential to improve grain yield in rice
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	yield	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	yield	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	44% increase in rice grain yield, indicating that GW6 has great potential to improve grain yield in rice
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain size	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain size	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	The knockout of GW6 exhibits reduced grain size and weight, whereas the overexpression of GW6 results in increased grain size and weight
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	ga	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	GW6 is induced by GA and its knockout down-regulates the expression of GA biosynthesis genes and decreases GA contents in the young panicle
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	Gibberellin	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	GA	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	GW6 is induced by GA and its knockout down-regulates the expression of GA biosynthesis genes and decreases GA contents in the young panicle
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain width	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	Here, we report the cloning and characterization of a QTL, GW6 (GRAIN WIDTH 6), which encodes a gibberellin-regulated GAST family protein and positively regulates grain width and weight
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain width	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	GW6 is highly expressed in the young panicle and increases grain width by promoting cell expansion in the spikelet hull
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain width	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	We found that a natural variation in the cis element CAAT-box in the promoter of GW6 is associated with its expression level and grain width and weight
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	GA biosynthesis	A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway.	GW6 is induced by GA and its knockout down-regulates the expression of GA biosynthesis genes and decreases GA contents in the young panicle
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain	Natural variation in OsGASR7 regulates grain length in rice.	Natural variation in OsGASR7 regulates grain length in rice.
OsGSR1|GW6|OsGASR7	Os06g0266800	LOC_Os06g15620	grain length	Natural variation in OsGASR7 regulates grain length in rice.	Natural variation in OsGASR7 regulates grain length in rice.
OsGST4	Os01g0353400	LOC_Os01g25100	growth	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Meanwhile, osgst4 mutant exhibited repressed growth and high sensitivity to salinity and oxidative stress, and recombinant OsGST4 protein was found to have ROS-scavenging activity in vitro
OsGST4	Os01g0353400	LOC_Os01g25100	oxidative stress	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Meanwhile, osgst4 mutant exhibited repressed growth and high sensitivity to salinity and oxidative stress, and recombinant OsGST4 protein was found to have ROS-scavenging activity in vitro
OsGST4	Os01g0353400	LOC_Os01g25100	salinity	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Meanwhile, osgst4 mutant exhibited repressed growth and high sensitivity to salinity and oxidative stress, and recombinant OsGST4 protein was found to have ROS-scavenging activity in vitro
OsGST4	Os01g0353400	LOC_Os01g25100	oxidative	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Meanwhile, osgst4 mutant exhibited repressed growth and high sensitivity to salinity and oxidative stress, and recombinant OsGST4 protein was found to have ROS-scavenging activity in vitro
OsGSTL2	Os03g0283100	LOC_Os03g17470	tillering	Cloning, molecular characterization and heterologous expression of a glutathione S-transferase gene in rice	Using semi-quantitative RT-PCR analysis, OsGSTL2 transcript was detected in the roots and leaves of seedling stage and tillering stage, and the roots, leaves and panicles of heading stage from rice plants, and the expression level of OsGSTL2 mRNA in rice roots show significant change under chlorsulfuron stress
OsGSTL2	Os03g0283100	LOC_Os03g17470	root	Cloning, molecular characterization and heterologous expression of a glutathione S-transferase gene in rice	Using semi-quantitative RT-PCR analysis, OsGSTL2 transcript was detected in the roots and leaves of seedling stage and tillering stage, and the roots, leaves and panicles of heading stage from rice plants, and the expression level of OsGSTL2 mRNA in rice roots show significant change under chlorsulfuron stress
OsGSTL2	Os03g0283100	LOC_Os03g17470	panicle	Cloning, molecular characterization and heterologous expression of a glutathione S-transferase gene in rice	Using semi-quantitative RT-PCR analysis, OsGSTL2 transcript was detected in the roots and leaves of seedling stage and tillering stage, and the roots, leaves and panicles of heading stage from rice plants, and the expression level of OsGSTL2 mRNA in rice roots show significant change under chlorsulfuron stress
OsGSTL2	Os03g0283100	LOC_Os03g17470	tiller	Cloning, molecular characterization and heterologous expression of a glutathione S-transferase gene in rice	Using semi-quantitative RT-PCR analysis, OsGSTL2 transcript was detected in the roots and leaves of seedling stage and tillering stage, and the roots, leaves and panicles of heading stage from rice plants, and the expression level of OsGSTL2 mRNA in rice roots show significant change under chlorsulfuron stress
OsGSTL2	Os03g0283100	LOC_Os03g17470	seedling	Cloning, molecular characterization and heterologous expression of a glutathione S-transferase gene in rice	Using semi-quantitative RT-PCR analysis, OsGSTL2 transcript was detected in the roots and leaves of seedling stage and tillering stage, and the roots, leaves and panicles of heading stage from rice plants, and the expression level of OsGSTL2 mRNA in rice roots show significant change under chlorsulfuron stress
OsGSTU17	Os09g0467200	LOC_Os09g29200	abiotic stress	Biochemical and physiological characterization of a tau class glutathione transferase from rice (Oryza sativa)	The relative transcript levels of OsGSTU17 mRNA varied significantly among the tissues in response to CDNB, hydrogen peroxide and atrazine treatments, indicating the gene has diverse regulation mechanisms in response to abiotic stresses
Osgstu3	Os10g0528300	None	jasmonic	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Salicylic acid, jasmonic acid and the auxin alpha-naphthalene acetic acid triggered osgstu4 and osgstu3 expression
Osgstu3	Os10g0528300	None	jasmonic acid	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Salicylic acid, jasmonic acid and the auxin alpha-naphthalene acetic acid triggered osgstu4 and osgstu3 expression
Osgstu3	Os10g0528300	None	root	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	PEG and the heavy metals Cd (20 microM), Zn (30 microM), Co and Ni rapidly and markedly induced osgstu4 and osgstu3 in rice seedling roots
Osgstu3	Os10g0528300	None	root	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Osgstu4 and osgstu3 were also induced in roots by hypoxic stress but not by cold nor heat shock
Osgstu3	Os10g0528300	None	root	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Salt stress and abscisic acid (ABA) rapidly induced osgstu3 in rice roots, whereas osgstu4 exhibited a late salt stress and no ABA response
Osgstu3	Os10g0528300	None	root	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots
Osgstu3	Os10g0528300	None	salicylic acid	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Salicylic acid, jasmonic acid and the auxin alpha-naphthalene acetic acid triggered osgstu4 and osgstu3 expression
Osgstu3	Os10g0528300	None	ABA	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Salt stress and abscisic acid (ABA) rapidly induced osgstu3 in rice roots, whereas osgstu4 exhibited a late salt stress and no ABA response
Osgstu3	Os10g0528300	None	seedling	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	PEG and the heavy metals Cd (20 microM), Zn (30 microM), Co and Ni rapidly and markedly induced osgstu4 and osgstu3 in rice seedling roots
Osgstu3	Os10g0528300	None	auxin	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Salicylic acid, jasmonic acid and the auxin alpha-naphthalene acetic acid triggered osgstu4 and osgstu3 expression
Osgstu3	Os10g0528300	None	salt	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Salt stress and abscisic acid (ABA) rapidly induced osgstu3 in rice roots, whereas osgstu4 exhibited a late salt stress and no ABA response
Osgstu3	Os10g0528300	None	salt	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots
Osgstu3	Os10g0528300	None	salt stress	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Salt stress and abscisic acid (ABA) rapidly induced osgstu3 in rice roots, whereas osgstu4 exhibited a late salt stress and no ABA response
Osgstu3	Os10g0528300	None	salt stress	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots
OsGSTZ2	Os12g0210300	LOC_Os12g10730	seedling	Cold sensitivity in rice (Oryza sativa L.) is strongly correlated with a naturally occurring I99V mutation in the multifunctional glutathione transferase isoenzyme GSTZ2	), a major QTL (quantitative trait locus) for seedling cold tolerance has been fine mapped to a region containing the genes OsGSTZ1 and OsGSTZ2
OsGSTZ2	Os12g0210300	LOC_Os12g10730	chilling	Cold sensitivity in rice (Oryza sativa L.) is strongly correlated with a naturally occurring I99V mutation in the multifunctional glutathione transferase isoenzyme GSTZ2	The results of the present study show that naturally occurring OsGSTZ2 isoforms differ in their enzymatic properties, which may contribute to the differential response to chilling stress generally exhibited by the two major rice subspecies
OsGSTZ2	Os12g0210300	LOC_Os12g10730	cold tolerance	Cold sensitivity in rice (Oryza sativa L.) is strongly correlated with a naturally occurring I99V mutation in the multifunctional glutathione transferase isoenzyme GSTZ2	), a major QTL (quantitative trait locus) for seedling cold tolerance has been fine mapped to a region containing the genes OsGSTZ1 and OsGSTZ2
OsGT1	Os01g0262600	LOC_Os01g15780	mitosis	Rice glycosyltransferase1 encodes a glycosyltransferase essential for pollen wall formation	Microscopic analyses revealed that osgt1 pollen developed normally to the pollen mitosis stage but failed to produce mature grains
OsGT1	Os01g0262600	LOC_Os01g15780	grain	Rice glycosyltransferase1 encodes a glycosyltransferase essential for pollen wall formation	Microscopic analyses revealed that osgt1 pollen developed normally to the pollen mitosis stage but failed to produce mature grains
OsGT1	Os01g0262600	LOC_Os01g15780	pollen	Rice glycosyltransferase1 encodes a glycosyltransferase essential for pollen wall formation	We examined the role of GLYCOSYLTRANSFERASE1 (OsGT1) in pollen wall development in rice (Oryza sativa)
OsGT1	Os01g0262600	LOC_Os01g15780	pollen	Rice glycosyltransferase1 encodes a glycosyltransferase essential for pollen wall formation	Microscopic analyses revealed that osgt1 pollen developed normally to the pollen mitosis stage but failed to produce mature grains
OsGT1	Os01g0262600	LOC_Os01g15780	pollen	Rice glycosyltransferase1 encodes a glycosyltransferase essential for pollen wall formation	In osgt1 pollen, intine structure was disrupted
OsGT1	Os01g0262600	LOC_Os01g15780	pollen	Rice glycosyltransferase1 encodes a glycosyltransferase essential for pollen wall formation	Taken together, our results suggest that OsGT1 is a Golgi-localized glycosyltransferase essential for intine construction and pollen maturation, providing new insight into male reproductive development
OsGT1	Os01g0262600	LOC_Os01g15780	reproductive	Rice glycosyltransferase1 encodes a glycosyltransferase essential for pollen wall formation	Taken together, our results suggest that OsGT1 is a Golgi-localized glycosyltransferase essential for intine construction and pollen maturation, providing new insight into male reproductive development
OsGT1	Os01g0262600	LOC_Os01g15780	growth	Biodegradation of butachlor in rice intensified by a regulator of OsGT1.	 This study developed a genetically improved rice genotype by overexpressing a novel glycosyltransferase gene named OsGT1 to accelerate removal of butachlor residues in rice crop and its growth environment
OsGT1	Os01g0262600	LOC_Os01g15780	growth	Biodegradation of butachlor in rice intensified by a regulator of OsGT1.	 The growth of the OsGT1 overexpression rice (OsOE) was significantly improved and butachlor-induced cellular damage was greatly attenuated compared to its wild-type (WT)
OsGT1	Os01g0262600	LOC_Os01g15780	growth	Biodegradation of butachlor in rice intensified by a regulator of OsGT1.	 Taken together, the reduced residues of parent butachlor in rice and its growth media point out that OsGT1 plays a critical role in detoxifying and catabolizing the poisoning chemical in plants and its environment
OsGT1	Os01g0262600	LOC_Os01g15780	stress	Biodegradation of butachlor in rice intensified by a regulator of OsGT1.	 Both transcriptional expression and protein activates of OsGT1 are considerably induced under butachlor stress
OsGT1	Os01g0262600	LOC_Os01g15780	glycosyltransferase	Biodegradation of butachlor in rice intensified by a regulator of OsGT1.	 This study developed a genetically improved rice genotype by overexpressing a novel glycosyltransferase gene named OsGT1 to accelerate removal of butachlor residues in rice crop and its growth environment
OsGT14;1	Os08g0143500	LOC_Os08g04790	growth	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	 OsGT14;1 was broadly expressed in all organs throughout the entire growth period, with a relatively high expression in the roots, stems, node I and husk
OsGT14;1	Os08g0143500	LOC_Os08g04790	growth	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	 Taken together, OsGT14;1 located at the Golgi is required for growth of both roots and shoots in rice through affecting cellulose synthesis
OsGT14;1	Os08g0143500	LOC_Os08g04790	salt	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	 The knockout of OsGT14;1 did not affect the tolerance to toxic mineral elements, including Al, As, Cd and salt stress, but did increase the sensitivity to low pH
OsGT14;1	Os08g0143500	LOC_Os08g04790	tolerance	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	 The knockout of OsGT14;1 did not affect the tolerance to toxic mineral elements, including Al, As, Cd and salt stress, but did increase the sensitivity to low pH
OsGT14;1	Os08g0143500	LOC_Os08g04790	salt stress	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	 The knockout of OsGT14;1 did not affect the tolerance to toxic mineral elements, including Al, As, Cd and salt stress, but did increase the sensitivity to low pH
OsGT14;1	Os08g0143500	LOC_Os08g04790	cellulose	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	 Mutation of OsGT14;1 resulted in decreased cellulose content and increased hemicellulose, but did not alter pectin in the cell wall of roots and shoots
OsGT14;1	Os08g0143500	LOC_Os08g04790	cellulose	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	 Taken together, OsGT14;1 located at the Golgi is required for growth of both roots and shoots in rice through affecting cellulose synthesis
OsGT14;1	Os08g0143500	LOC_Os08g04790	cell wall	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	 Mutation of OsGT14;1 resulted in decreased cellulose content and increased hemicellulose, but did not alter pectin in the cell wall of roots and shoots
OsGT14;1	Os08g0143500	LOC_Os08g04790	node	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	 OsGT14;1 was broadly expressed in all organs throughout the entire growth period, with a relatively high expression in the roots, stems, node I and husk
OsGT14;1	Os08g0143500	LOC_Os08g04790	glycosyltransferase	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice
OsGT47A	Os01g0926600	LOC_Os01g70190	stem	Functional conservation of the glycosyltransferase gene GT47A in the monocot rice.	Expression pattern analysis showed that the OsGT47A gene is highly expressed in the rice stem
OsGT47A	Os01g0926600	LOC_Os01g70190	growth	Functional conservation of the glycosyltransferase gene GT47A in the monocot rice.	Overexpression of OsGT47A in the irx10 irx10L double mutant rescued the plant growth phenotype and restored secondary wall thickness
OsGT47A	Os01g0926600	LOC_Os01g70190	plant growth	Functional conservation of the glycosyltransferase gene GT47A in the monocot rice.	Overexpression of OsGT47A in the irx10 irx10L double mutant rescued the plant growth phenotype and restored secondary wall thickness
OsGT61-1|XAX1	Os02g0329800	LOC_Os02g22380	shoot	Transcript expression and regulatory characteristics of a rice glycosyltransferase OsGT61-1 gene	OsGT61-1 transcript was noted to be ABA- and NaCl-responsive and its expression was more prominent in root than in shoot tissues
OsGT61-1|XAX1	Os02g0329800	LOC_Os02g22380	root	Transcript expression and regulatory characteristics of a rice glycosyltransferase OsGT61-1 gene	OsGT61-1 transcript was noted to be ABA- and NaCl-responsive and its expression was more prominent in root than in shoot tissues
OsGT61-1|XAX1	Os02g0329800	LOC_Os02g22380	biomass	Hydroxycinnamic acid-modified xylan side chains and their cross-linking products in rice cell walls are reduced in the Xylosyl arabinosyl substitution of xylan 1 mutant.	 Ultimately, XAX1 plays a fundamental role in cross-linking, providing a potential target for the improvement of use of grass biomass
OsGT61-1|XAX1	Os02g0329800	LOC_Os02g22380	lignin	Hydroxycinnamic acid-modified xylan side chains and their cross-linking products in rice cell walls are reduced in the Xylosyl arabinosyl substitution of xylan 1 mutant.	 Moreover, structures resembling the direct cross-link between xylan and lignin (ferulated arabinosyl substitutions bound to lignin monomers and dimers), together with diferulates known to cross-link xylan, are strongly reduced in xax1
OsGT61-1|XAX1	Os02g0329800	LOC_Os02g22380	glycosyltransferase	Hydroxycinnamic acid-modified xylan side chains and their cross-linking products in rice cell walls are reduced in the Xylosyl arabinosyl substitution of xylan 1 mutant.	 XAX1 (Xylosyl arabinosyl substitution of xylan 1), a rice (Oryza sativa) member of the glycosyltransferase family GT61, has been described to add xylosyl residues to arabinosyl substitutions modified by ferulic acid
OsGUN4	Os11g0267000	LOC_Os11g16550	magnesium	C-terminal residues of oryza sativa GUN4 are required for the activation of the ChlH subunit of magnesium chelatase in chlorophyll synthesis	Maximum magnesium chelatase activity requires pre-activation of OsChlH with OsGUN4, Mg(2+) and protoporphyrin-IX
OsGUN4	Os11g0267000	LOC_Os11g16550	magnesium	C-terminal residues of oryza sativa GUN4 are required for the activation of the ChlH subunit of magnesium chelatase in chlorophyll synthesis	OsGUN4 and OsChlH preincubated without protoporphyrin-IX yields magnesium chelatase activity similar to assays without OsGUN4, suggesting formation of a dead-end complex
OsGUX1	Os01g0880200	LOC_Os01g65780	leaf	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	The overexpression of OsGUX1 reduced chlorophyll content, and the suppression of this gene increased chlorophyll content of rice leaf
OsGUX1	Os01g0880200	LOC_Os01g65780	leaf	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	OsGUX1 is located in Golgi apparatus, and highly expressed in seedling leaf and the tissues in which primary cell wall synthesis occurring
OsGUX1	Os01g0880200	LOC_Os01g65780	leaf	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	Our experimental data indicate that OsGUX1 is responsible for addition of glucuronic acid residues onto xylan and participates in accumulation of cellulose and hemicellulose in the cell wall deposition, thus thickening the primary cell wall of mesophyll cells, which might lead to reduced chlorophyll content in rice leaf
OsGUX1	Os01g0880200	LOC_Os01g65780	seedling	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	OsGUX1 is located in Golgi apparatus, and highly expressed in seedling leaf and the tissues in which primary cell wall synthesis occurring
OsGUX1	Os01g0880200	LOC_Os01g65780	cellulose	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	Our experimental data indicate that OsGUX1 is responsible for addition of glucuronic acid residues onto xylan and participates in accumulation of cellulose and hemicellulose in the cell wall deposition, thus thickening the primary cell wall of mesophyll cells, which might lead to reduced chlorophyll content in rice leaf
OsGUX1	Os01g0880200	LOC_Os01g65780	cell wall	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	OsGUX1 is located in Golgi apparatus, and highly expressed in seedling leaf and the tissues in which primary cell wall synthesis occurring
OsGUX1	Os01g0880200	LOC_Os01g65780	cell wall	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	Our experimental data indicate that OsGUX1 is responsible for addition of glucuronic acid residues onto xylan and participates in accumulation of cellulose and hemicellulose in the cell wall deposition, thus thickening the primary cell wall of mesophyll cells, which might lead to reduced chlorophyll content in rice leaf
OsGUX1	Os01g0880200	LOC_Os01g65780	chlorophyll content	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	The overexpression of OsGUX1 reduced chlorophyll content, and the suppression of this gene increased chlorophyll content of rice leaf
OsGUX1	Os01g0880200	LOC_Os01g65780	chlorophyll content	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	Our experimental data indicate that OsGUX1 is responsible for addition of glucuronic acid residues onto xylan and participates in accumulation of cellulose and hemicellulose in the cell wall deposition, thus thickening the primary cell wall of mesophyll cells, which might lead to reduced chlorophyll content in rice leaf
OsGWD1|GWD1	Os06g0498400	LOC_Os06g30310	starch	Disruption of a rice gene for alpha-glucan water dikinase, OsGWD1, leads to hyperaccumulation of starch in leaves but exhibits limited effects on growth	Disruption of a rice gene for alpha-glucan water dikinase, OsGWD1, leads to hyperaccumulation of starch in leaves but exhibits limited effects on growth
OsGWD1|GWD1	Os06g0498400	LOC_Os06g30310	growth	Disruption of a rice gene for alpha-glucan water dikinase, OsGWD1, leads to hyperaccumulation of starch in leaves but exhibits limited effects on growth	Disruption of a rice gene for alpha-glucan water dikinase, OsGWD1, leads to hyperaccumulation of starch in leaves but exhibits limited effects on growth
OsGWD1|GWD1	Os06g0498400	LOC_Os06g30310	growth	Glucan, Water-Dikinase 1 (GWD1), an ideal biotechnological target for potential improving yield and quality in rice	Analysis of the gwd1 plants indicated that promoter editing mediated down-regulation of GWD1 caused no observable effects on rice growth and development, but only mildly modified its grain transparency and seed germination
OsGWD1|GWD1	Os06g0498400	LOC_Os06g30310	grain	Glucan, Water-Dikinase 1 (GWD1), an ideal biotechnological target for potential improving yield and quality in rice	Analysis of the gwd1 plants indicated that promoter editing mediated down-regulation of GWD1 caused no observable effects on rice growth and development, but only mildly modified its grain transparency and seed germination
OsGWD1|GWD1	Os06g0498400	LOC_Os06g30310	seed	Glucan, Water-Dikinase 1 (GWD1), an ideal biotechnological target for potential improving yield and quality in rice	Analysis of the gwd1 plants indicated that promoter editing mediated down-regulation of GWD1 caused no observable effects on rice growth and development, but only mildly modified its grain transparency and seed germination
OsGWD1|GWD1	Os06g0498400	LOC_Os06g30310	starch	Glucan, Water-Dikinase 1 (GWD1), an ideal biotechnological target for potential improving yield and quality in rice	Therefore, our study shows that GWD1 is not only involved in transitory starch degradation in source tissues, but also plays key roles in the seeds, which is a sink tissue
OsGWD1|GWD1	Os06g0498400	LOC_Os06g30310	seed germination	Glucan, Water-Dikinase 1 (GWD1), an ideal biotechnological target for potential improving yield and quality in rice	Analysis of the gwd1 plants indicated that promoter editing mediated down-regulation of GWD1 caused no observable effects on rice growth and development, but only mildly modified its grain transparency and seed germination
OsGWD1|GWD1	Os06g0498400	LOC_Os06g30310	breeding	Glucan, Water-Dikinase 1 (GWD1), an ideal biotechnological target for potential improving yield and quality in rice	In conclusion, we find that GWD1 is an ideal biotechnological target with promising potential for the breeding of elite rice cultivars via genetic engineering
OsGZF1	Os07g0668600	LOC_Os07g47240	grain	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	In this study, we describe a zinc finger gene of the Cys3His1 (CCCH or C3H) class, named OsGZF1, which was identified in a yeast one-hybrid screening using the core promoter region of GluB-1 as bait and cDNA expression libraries prepared from developing rice panicles and grains as prey
OsGZF1	Os07g0668600	LOC_Os07g47240	grain	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	Furthermore, down-regulation of OsGZF1 by an RNAi approach increased grain nitrogen concentration
OsGZF1	Os07g0668600	LOC_Os07g47240	grain	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	We propose that OsGZF1 has a function in regulating the GluB-1 promoter and controls accumulation of glutelins during grain development
OsGZF1	Os07g0668600	LOC_Os07g47240	panicle	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	In this study, we describe a zinc finger gene of the Cys3His1 (CCCH or C3H) class, named OsGZF1, which was identified in a yeast one-hybrid screening using the core promoter region of GluB-1 as bait and cDNA expression libraries prepared from developing rice panicles and grains as prey
OsGZF1	Os07g0668600	LOC_Os07g47240	nitrogen	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	Furthermore, down-regulation of OsGZF1 by an RNAi approach increased grain nitrogen concentration
OsGZF1	Os07g0668600	LOC_Os07g47240	seed	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	leaf	Expression of a rice homeobox gene causes altered morphology of transgenic plants	Introduction of the cloned OSH1 gene into rice resulted in altered leaf morphology, which was similar to that of the maize morphological mutant Knotted-1 (Kn1), indicating that OSH1 is a rice gene homologous to the maize Kn1 gene
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot	Isolation and characterization of a rice homebox gene, OSH15	Whereas the expression of OSH1 continued within the shoot apical meristem, OSH15 expression within the shoot apical meristem ceased but became observable in a ring shaped pattern at the boundaries of some embryonic organs
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot	Isolation and characterization of a rice homebox gene, OSH15	RNA in situ localization data suggest that OSH15 may play roles in the shoot organization during early embryogenesis and thereafter, OSH15 may be involved in morphogenetic events around the shoot apical meristem
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	growth	KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice	We produced transgenic rice calli, which constitutively express each of four KNOX family class 1 homeobox genes of rice, OSH1, OSH16, OSH15, and OSH71, and found that constitutive and ectopic expression of such genes inhibits normal regeneration from transformed calli, which showed continuous growth around their shoot-regenerating stages
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot	Shoot organization genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice	Rapid and random leaf production in sho mutants is correlated with the frequent and disorganized cell divisions in the shoot meristem and with a reduction of expression domain of a rice homeobox gene, OSH1
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	reproductive	Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice	Interestingly, loss-of-function mutants of OSH1 lose the SAM just after germination but can be rescued to grow until reproductive development when they are regenerated from callus
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	ga	Decreased GA1 Content Caused by the Overexpression of OSH1 Is Accompanied by Suppression of GA 20-Oxidase Gene Expression	Here we report the results of our analysis on the regulatory mechanism(s) ofOSH1 on GA metabolism
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	ga	Decreased GA1 Content Caused by the Overexpression of OSH1 Is Accompanied by Suppression of GA 20-Oxidase Gene Expression	The internal GA1 and GA20 contents inOSH1-transformed tobacco were dramatically reduced compared with those of wild-type plants, whereas the level of GA19, a mid-product of GA 20-oxidase, was 25% of the wild-type level
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	ga	Decreased GA1 Content Caused by the Overexpression of OSH1 Is Accompanied by Suppression of GA 20-Oxidase Gene Expression	RNA-blot analysis revealed that GA 20-oxidase gene expression was suppressed in stem tissue of OSH1-transformed tobacco plants
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	ga	Decreased GA1 Content Caused by the Overexpression of OSH1 Is Accompanied by Suppression of GA 20-Oxidase Gene Expression	Based on these results, we conclude that overexpression ofOSH1 causes a reduction of the level of GA1by suppressing GA 20-oxidase expression
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	ga	Decreased GA1 Content Caused by the Overexpression of OSH1 Is Accompanied by Suppression of GA 20-Oxidase Gene Expression	Decreased GA1 Content Caused by the Overexpression of OSH1 Is Accompanied by Suppression of GA 20-Oxidase Gene Expression
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot	KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice	We produced transgenic rice calli, which constitutively express each of four KNOX family class 1 homeobox genes of rice, OSH1, OSH16, OSH15, and OSH71, and found that constitutive and ectopic expression of such genes inhibits normal regeneration from transformed calli, which showed continuous growth around their shoot-regenerating stages
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot	KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice	In the normal shoot-regeneration process of calli, expression of endogenous OSH1 was restricted in presumptive shoot-regenerating regions of calli and not observed in other areas
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot apical meristem	Isolation and characterization of a rice homebox gene, OSH15	Whereas the expression of OSH1 continued within the shoot apical meristem, OSH15 expression within the shoot apical meristem ceased but became observable in a ring shaped pattern at the boundaries of some embryonic organs
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot apical meristem	Isolation and characterization of a rice homebox gene, OSH15	RNA in situ localization data suggest that OSH15 may play roles in the shoot organization during early embryogenesis and thereafter, OSH15 may be involved in morphogenetic events around the shoot apical meristem
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	leaf	Shoot organization genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice	Rapid and random leaf production in sho mutants is correlated with the frequent and disorganized cell divisions in the shoot meristem and with a reduction of expression domain of a rice homeobox gene, OSH1
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	meristem	Isolation and characterization of a rice homebox gene, OSH15	Whereas the expression of OSH1 continued within the shoot apical meristem, OSH15 expression within the shoot apical meristem ceased but became observable in a ring shaped pattern at the boundaries of some embryonic organs
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	meristem	Isolation and characterization of a rice homebox gene, OSH15	RNA in situ localization data suggest that OSH15 may play roles in the shoot organization during early embryogenesis and thereafter, OSH15 may be involved in morphogenetic events around the shoot apical meristem
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	leaf	Disruption of KNOX gene suppression in leaf by introducing its cDNA in rice	A 5' upstream region of OSH1 had the ability to direct the expression of a reporter gene in leaf in addition to the SAM
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	leaf	Disruption of KNOX gene suppression in leaf by introducing its cDNA in rice	Introduction of OSH1 cDNA without a promoter sequence caused ectopic expression of both endogenous OSH1 and introduced OSH1 cDNA itself into the leaf, which resulted in morphological abnormalities in the leaf resembling those of the overexpressors
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	leaf	Disruption of KNOX gene suppression in leaf by introducing its cDNA in rice	These results indicate that an extra copy of OSH1 exons with no promoter sequence disrupts suppression of OSH1 in the transgenic leaf
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	cell division	Shoot organization genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice	Rapid and random leaf production in sho mutants is correlated with the frequent and disorganized cell divisions in the shoot meristem and with a reduction of expression domain of a rice homeobox gene, OSH1
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	stem	Decreased GA1 Content Caused by the Overexpression of OSH1 Is Accompanied by Suppression of GA 20-Oxidase Gene Expression	RNA-blot analysis revealed that GA 20-oxidase gene expression was suppressed in stem tissue of OSH1-transformed tobacco plants
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	meristem	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1	Consistent with this result, OSH1, a molecular marker of meristematic indeterminate cells in rice, continues to be expressed in this region
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	meristem	Shoot organization genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice	Rapid and random leaf production in sho mutants is correlated with the frequent and disorganized cell divisions in the shoot meristem and with a reduction of expression domain of a rice homeobox gene, OSH1
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	iaa	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	In tdd1 embryos, the expression patterns of OSH1 and OsSCR, which mark the presumptive apical region and the L2 layer, respectively, are identical to those in WT, suggesting a possibility either that different IAA levels are required for basic pattern formation than for organ formation or that an orthologous gene compensates for TDD1 deficiency during pattern formation
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot apical meristem	A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis	In situ hybridization analysis revealed that in the wild-type embryo, OSH1 was first expressed at the globular stage, much earlier than organogenesis started, in a ventral region where shoot apical meristem and epiblast would later develop
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot apical meristem	A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis	At later stages after organogenesis had initiated, OSH1 expression was observed in shoot apical meristem [except in the L1 (tunica) layer], epiblast, radicle, and their intervening tissues in descending strength of expression level with embryonic maturation
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	meristem	A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis	In situ hybridization analysis revealed that in the wild-type embryo, OSH1 was first expressed at the globular stage, much earlier than organogenesis started, in a ventral region where shoot apical meristem and epiblast would later develop
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	meristem	A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis	At later stages after organogenesis had initiated, OSH1 expression was observed in shoot apical meristem [except in the L1 (tunica) layer], epiblast, radicle, and their intervening tissues in descending strength of expression level with embryonic maturation
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot	A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis	In situ hybridization analysis revealed that in the wild-type embryo, OSH1 was first expressed at the globular stage, much earlier than organogenesis started, in a ventral region where shoot apical meristem and epiblast would later develop
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	shoot	A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis	At later stages after organogenesis had initiated, OSH1 expression was observed in shoot apical meristem [except in the L1 (tunica) layer], epiblast, radicle, and their intervening tissues in descending strength of expression level with embryonic maturation
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	brassinosteroid phytohormone pathway	Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice	We report that a rice (Oryza sativa) KNOX gene Oryza sativa homeobox1 (OSH1) represses the brassinosteroid (BR) phytohormone pathway through activation of BR catabolism genes.
OSH1|Oskn1	Os03g0727000	LOC_Os03g51690	brassinosteroid	Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice	We report that a rice (Oryza sativa) KNOX gene Oryza sativa homeobox1 (OSH1) represses the brassinosteroid (BR) phytohormone pathway through activation of BR catabolism genes.
OSH3	Os03g0727200|Os03g0727150	LOC_Os03g51710	domestication	Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication	The facts that these substitutions occurred specifically at the functionally important amino acids and the sequences are conserved in intron where neutral mutations accumulate suggest the substitutions at the invariant positions of OSH3 have been fixed by artificial selections during domestication
OSH3	Os03g0727200|Os03g0727150	LOC_Os03g51710	domestication	Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication	Based on these observations, we hypothesize that OSH3 is responsible for one of the traits that are selectively introduced during the domestication of most of Japonica and a part of Javanica type of rice
OSH3	Os03g0727200|Os03g0727150	LOC_Os03g51710	domestication	Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication	Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	root	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The OsAMTR1 and OsSCP overexpressing plants showed higher seed germination, root growth and fresh weight than wild-type plants under stress conditions
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	growth	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The OsAMTR1 and OsSCP overexpressing plants showed higher seed germination, root growth and fresh weight than wild-type plants under stress conditions
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	seed	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The OsAMTR1 and OsSCP overexpressing plants showed higher seed germination, root growth and fresh weight than wild-type plants under stress conditions
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	salt	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The role of OsAMTR1 and OsSCP under stress was analyzed by overexpressing them constitutively in Arabidopsis and responses of transgenic plants were assessed under salt and water-deficit stress
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	seed germination	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The OsAMTR1 and OsSCP overexpressing plants showed higher seed germination, root growth and fresh weight than wild-type plants under stress conditions
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	abiotic stress	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The genes encoding OsAMTR1 and OsSCP were stress-responsive and showed higher expression upon abiotic stress treatments
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	stress	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The genes encoding OsAMTR1 and OsSCP were stress-responsive and showed higher expression upon abiotic stress treatments
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	stress	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The role of OsAMTR1 and OsSCP under stress was analyzed by overexpressing them constitutively in Arabidopsis and responses of transgenic plants were assessed under salt and water-deficit stress
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	stress	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The OsAMTR1 and OsSCP overexpressing plants showed higher seed germination, root growth and fresh weight than wild-type plants under stress conditions
Osh36|OsAMTR1	Os05g0475400	LOC_Os05g39770	biotic stress	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	The genes encoding OsAMTR1 and OsSCP were stress-responsive and showed higher expression upon abiotic stress treatments
OSH6	Os01g0302500	LOC_Os01g19694	panicle	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice	These data suggest that OSH6-Ds interferes with a developmental mechanism involved in bract differentiation, especially at the basal nodes of panicles
OSH6	Os01g0302500	LOC_Os01g19694	growth	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice
OSH6	Os01g0302500	LOC_Os01g19694	leaf	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice	The truncated mRNA was expressed ectopically in leaf tissues and encoded the N-terminal region of OSH6, which includes the KNOX1 and partial KNOX2 subdomains
OSH6	Os01g0302500	LOC_Os01g19694	leaf	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice
OSH6	Os01g0302500	LOC_Os01g19694	sheath	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice	These phenotypes distinguished it from the OSH6 transgene whose ectopic expression led to a blade to sheath transformation phenotype at the midrib region of leaves, similar to that seen in dominant Lg3 mutants
OSH71|Oskn2	Os05g0129700	LOC_Os05g03884	vegetative	Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis	Whereas Oskn3 transformants showed the most pronounced phenotypic effects during vegetative development, Oskn2 transformants showed relatively mild alterations in the vegetative phase but a more severely affected flower morphology
OSH71|Oskn2	Os05g0129700	LOC_Os05g03884	panicle	Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice	Ectopic expression of Oskn2 or Oskn3 induced similar defects in panicle branching
OSH71|Oskn2	Os05g0129700	LOC_Os05g03884	flower	Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis	Whereas Oskn3 transformants showed the most pronounced phenotypic effects during vegetative development, Oskn2 transformants showed relatively mild alterations in the vegetative phase but a more severely affected flower morphology
OSH71|Oskn2	Os05g0129700	LOC_Os05g03884	shoot	KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice	We produced transgenic rice calli, which constitutively express each of four KNOX family class 1 homeobox genes of rice, OSH1, OSH16, OSH15, and OSH71, and found that constitutive and ectopic expression of such genes inhibits normal regeneration from transformed calli, which showed continuous growth around their shoot-regenerating stages
OSH71|Oskn2	Os05g0129700	LOC_Os05g03884	branching	Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice	Ectopic expression of Oskn2 or Oskn3 induced similar defects in panicle branching
OSH71|Oskn2	Os05g0129700	LOC_Os05g03884	growth	KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice	We produced transgenic rice calli, which constitutively express each of four KNOX family class 1 homeobox genes of rice, OSH1, OSH16, OSH15, and OSH71, and found that constitutive and ectopic expression of such genes inhibits normal regeneration from transformed calli, which showed continuous growth around their shoot-regenerating stages
OsHAC1;1	Os02g0102300	LOC_Os02g01220	root	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	OsHAC1:1 and OsHAC1;2 are predominantly expressed in roots, with OsHAC1;1 being abundant in the epidermis, root hairs and pericycle cells while OsHAC1;2 is abundant in the epidermis, outer layers of cortex and endodermis cells
OsHAC1;1	Os02g0102300	LOC_Os02g01220	grain	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	When grown under aerobic soil conditions overexpression of either OsHAC1;1 or OsHAC1;2 also decreased As accumulation in rice grain, whereas grain As increased in the knockout mutants
OsHAC1;1	Os02g0102300	LOC_Os02g01220	grain	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	We conclude that OsHAC1;1 and OsHAC1;2 are arsenate reductases that play an important role in restricting As accumulation in rice shoots and grain
OsHAC1;1	Os02g0102300	LOC_Os02g01220	tolerance	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	In contrast, overexpression of either OsHAC1;1 or OsHAC1;2 increased arsenite efflux, reduced As accumulation and enhanced arsenate tolerance
OsHAC1;1	Os02g0102300	LOC_Os02g01220	arsenite	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	OsHAC1;1 and OsHAC1;2 are able to complement an Escherichia coli mutant lacking the endogenous arsenate reductase and to reduce arsenate to arsenite
OsHAC1;1	Os02g0102300	LOC_Os02g01220	arsenite	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	Knocking out OsHAC1;1 or OsHAC1;2 decreased the reduction of arsenate to arsenite in roots, reducing arsenite efflux to the external medium
OsHAC1;1	Os02g0102300	LOC_Os02g01220	arsenite	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	In contrast, overexpression of either OsHAC1;1 or OsHAC1;2 increased arsenite efflux, reduced As accumulation and enhanced arsenate tolerance
OsHAC1;1	Os02g0102300	LOC_Os02g01220	root hair	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	OsHAC1:1 and OsHAC1;2 are predominantly expressed in roots, with OsHAC1;1 being abundant in the epidermis, root hairs and pericycle cells while OsHAC1;2 is abundant in the epidermis, outer layers of cortex and endodermis cells
OsHAC1;1	Os02g0102300	LOC_Os02g01220	arsenic accumulation	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.
OsHAC1;2	Os04g0249600	LOC_Os04g17660	root	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	OsHAC1:1 and OsHAC1;2 are predominantly expressed in roots, with OsHAC1;1 being abundant in the epidermis, root hairs and pericycle cells while OsHAC1;2 is abundant in the epidermis, outer layers of cortex and endodermis cells
OsHAC1;2	Os04g0249600	LOC_Os04g17660	grain	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	When grown under aerobic soil conditions overexpression of either OsHAC1;1 or OsHAC1;2 also decreased As accumulation in rice grain, whereas grain As increased in the knockout mutants
OsHAC1;2	Os04g0249600	LOC_Os04g17660	grain	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	We conclude that OsHAC1;1 and OsHAC1;2 are arsenate reductases that play an important role in restricting As accumulation in rice shoots and grain
OsHAC1;2	Os04g0249600	LOC_Os04g17660	tolerance	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	In contrast, overexpression of either OsHAC1;1 or OsHAC1;2 increased arsenite efflux, reduced As accumulation and enhanced arsenate tolerance
OsHAC1;2	Os04g0249600	LOC_Os04g17660	arsenite	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	OsHAC1;1 and OsHAC1;2 are able to complement an Escherichia coli mutant lacking the endogenous arsenate reductase and to reduce arsenate to arsenite
OsHAC1;2	Os04g0249600	LOC_Os04g17660	arsenite	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	Knocking out OsHAC1;1 or OsHAC1;2 decreased the reduction of arsenate to arsenite in roots, reducing arsenite efflux to the external medium
OsHAC1;2	Os04g0249600	LOC_Os04g17660	arsenite	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	In contrast, overexpression of either OsHAC1;1 or OsHAC1;2 increased arsenite efflux, reduced As accumulation and enhanced arsenate tolerance
OsHAC1;2	Os04g0249600	LOC_Os04g17660	root hair	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	OsHAC1:1 and OsHAC1;2 are predominantly expressed in roots, with OsHAC1;1 being abundant in the epidermis, root hairs and pericycle cells while OsHAC1;2 is abundant in the epidermis, outer layers of cortex and endodermis cells
OsHAC1;2	Os04g0249600	LOC_Os04g17660	arsenic accumulation	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.
OsHAC4	Os02g0157600	LOC_Os02g06290	tolerance	OsHAC4 is critical for arsenate tolerance and regulates arsenic accumulation in rice.	OsHAC4 is critical for arsenate tolerance and regulates arsenic accumulation in rice.
OsHAC4	Os02g0157600	LOC_Os02g06290	tolerance	OsHAC4 is critical for arsenate tolerance and regulates arsenic accumulation in rice.	Overexpression of OsHAC4 increased As(V) tolerance and decreased As accumulation in rice plants
OsHAC4	Os02g0157600	LOC_Os02g06290	arsenic accumulation	OsHAC4 is critical for arsenate tolerance and regulates arsenic accumulation in rice.	OsHAC4 is critical for arsenate tolerance and regulates arsenic accumulation in rice.
OsHAD1	Os03g0834050	LOC_Os03g61829	seedlings	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	Exogenous application of recombinant OsHAD1 protein in growth media supplemented with phytate, led to marked increase in growth and total P content of Pi deficient WT rice seedlings
OsHAD1	Os03g0834050	LOC_Os03g61829	seedlings	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	Further, overexpression of OsHAD1 in rice resulted in enhanced phosphatase activity, biomass, total and soluble P content in Pi deficient transgenic seedlings treated with phytate as restricted Pi source
OsHAD1	Os03g0834050	LOC_Os03g61829	growth	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	Exogenous application of recombinant OsHAD1 protein in growth media supplemented with phytate, led to marked increase in growth and total P content of Pi deficient WT rice seedlings
OsHAD1	Os03g0834050	LOC_Os03g61829	homeostasis	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	We conclude that besides dephosphorylation of cellular organic-P, OsHAD1 in coordination with kinases may regulate phosphorylation status of downstream targets to accomplish Pi homeostasis under limited Pi supply
OsHAD1	Os03g0834050	LOC_Os03g61829	Pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	Here, we identified and characterized a PHR2 regulated; novel low Pi responsive haloacid dehalogenase (HAD)-like hydrolase, OsHAD1
OsHAD1	Os03g0834050	LOC_Os03g61829	Pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	While, OsHAD1 is a functional HAD protein having both acid phosphatase and phytase activity; it showed little homology with other known low Pi responsive HAD superfamily members
OsHAD1	Os03g0834050	LOC_Os03g61829	Pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	Exogenous application of recombinant OsHAD1 protein in growth media supplemented with phytate, led to marked increase in growth and total P content of Pi deficient WT rice seedlings
OsHAD1	Os03g0834050	LOC_Os03g61829	Pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	Further, overexpression of OsHAD1 in rice resulted in enhanced phosphatase activity, biomass, total and soluble P content in Pi deficient transgenic seedlings treated with phytate as restricted Pi source
OsHAD1	Os03g0834050	LOC_Os03g61829	Pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	We conclude that besides dephosphorylation of cellular organic-P, OsHAD1 in coordination with kinases may regulate phosphorylation status of downstream targets to accomplish Pi homeostasis under limited Pi supply
OsHAD1	Os03g0834050	LOC_Os03g61829	pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	Here, we identified and characterized a PHR2 regulated; novel low Pi responsive haloacid dehalogenase (HAD)-like hydrolase, OsHAD1
OsHAD1	Os03g0834050	LOC_Os03g61829	pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	While, OsHAD1 is a functional HAD protein having both acid phosphatase and phytase activity; it showed little homology with other known low Pi responsive HAD superfamily members
OsHAD1	Os03g0834050	LOC_Os03g61829	pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	Exogenous application of recombinant OsHAD1 protein in growth media supplemented with phytate, led to marked increase in growth and total P content of Pi deficient WT rice seedlings
OsHAD1	Os03g0834050	LOC_Os03g61829	pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	Further, overexpression of OsHAD1 in rice resulted in enhanced phosphatase activity, biomass, total and soluble P content in Pi deficient transgenic seedlings treated with phytate as restricted Pi source
OsHAD1	Os03g0834050	LOC_Os03g61829	pi	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	We conclude that besides dephosphorylation of cellular organic-P, OsHAD1 in coordination with kinases may regulate phosphorylation status of downstream targets to accomplish Pi homeostasis under limited Pi supply
OsHAD1	Os03g0834050	LOC_Os03g61829	Pi homeostasis	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	We conclude that besides dephosphorylation of cellular organic-P, OsHAD1 in coordination with kinases may regulate phosphorylation status of downstream targets to accomplish Pi homeostasis under limited Pi supply
OsHAD1	Os03g0834050	LOC_Os03g61829	protein kinase	OsHAD1, a haloacid dehalogenase-like APase enhances phosphate accumulation.	To elucidate the underlying regulatory mechanisms of OsHAD1, we performed in-vitro pull down assays which revealed association of OsHAD1 with protein kinases
OsHAK_like	None	LOC_Os03g55370	growth	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsHAK_like	None	LOC_Os03g55370	stress	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsHAK_like	None	LOC_Os03g55370	Down-regulated genes	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsHAK_like	None	LOC_Os03g55370	salt	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsHAK_like	None	LOC_Os03g55370	potassium	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 These are OsTPKa or Vacuolar two-pore potassium channel and OsHAK_like or a hypothetical protein of the HAK family
OsHAK_like	None	LOC_Os03g55370	salt stress	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsHAK_like	None	LOC_Os03g55370	plant growth	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsHAK1	Os04g0401700	LOC_Os04g32920	vascular bundle	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Expression of OsHAK1 is up-regulated by K deficiency or salt stress in various tissues, particularly in the root and shoot apical meristem, the epidermises and steles of root, and vascular bundles of shoot
OsHAK1	Os04g0401700	LOC_Os04g32920	root	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Expression of OsHAK1 is up-regulated by K deficiency or salt stress in various tissues, particularly in the root and shoot apical meristem, the epidermises and steles of root, and vascular bundles of shoot
OsHAK1	Os04g0401700	LOC_Os04g32920	root	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Both oshak1 knockout mutants in comparison to their respective Dongjin or Manan wild types showed dramatically reduction in K concentration and stunted root and shoot growth
OsHAK1	Os04g0401700	LOC_Os04g32920	root	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Knockout of OsHAK1 reduced the K absorption rate of unit root surface area by 50-55% and 30%, and total K uptake by 80% and 65% at 0
OsHAK1	Os04g0401700	LOC_Os04g32920	root	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	The root net high affinity K uptake of oshak1 mutants was sensitive to salt stress, but not to ammonium supply
OsHAK1	Os04g0401700	LOC_Os04g32920	growth	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.
OsHAK1	Os04g0401700	LOC_Os04g32920	growth	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Both oshak1 knockout mutants in comparison to their respective Dongjin or Manan wild types showed dramatically reduction in K concentration and stunted root and shoot growth
OsHAK1	Os04g0401700	LOC_Os04g32920	growth	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	The positive relationship between K concentration and shoot biomass in the mutants suggests that OsHAK1 plays an essential role in K-mediated rice growth and salt tolerance over low and high K concentration ranges
OsHAK1	Os04g0401700	LOC_Os04g32920	shoot	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Expression of OsHAK1 is up-regulated by K deficiency or salt stress in various tissues, particularly in the root and shoot apical meristem, the epidermises and steles of root, and vascular bundles of shoot
OsHAK1	Os04g0401700	LOC_Os04g32920	shoot	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Both oshak1 knockout mutants in comparison to their respective Dongjin or Manan wild types showed dramatically reduction in K concentration and stunted root and shoot growth
OsHAK1	Os04g0401700	LOC_Os04g32920	shoot	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	The positive relationship between K concentration and shoot biomass in the mutants suggests that OsHAK1 plays an essential role in K-mediated rice growth and salt tolerance over low and high K concentration ranges
OsHAK1	Os04g0401700	LOC_Os04g32920	salt	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.
OsHAK1	Os04g0401700	LOC_Os04g32920	salt	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Expression of OsHAK1 is up-regulated by K deficiency or salt stress in various tissues, particularly in the root and shoot apical meristem, the epidermises and steles of root, and vascular bundles of shoot
OsHAK1	Os04g0401700	LOC_Os04g32920	salt	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	The root net high affinity K uptake of oshak1 mutants was sensitive to salt stress, but not to ammonium supply
OsHAK1	Os04g0401700	LOC_Os04g32920	salt	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	The positive relationship between K concentration and shoot biomass in the mutants suggests that OsHAK1 plays an essential role in K-mediated rice growth and salt tolerance over low and high K concentration ranges
OsHAK1	Os04g0401700	LOC_Os04g32920	salt tolerance	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.
OsHAK1	Os04g0401700	LOC_Os04g32920	salt tolerance	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	The positive relationship between K concentration and shoot biomass in the mutants suggests that OsHAK1 plays an essential role in K-mediated rice growth and salt tolerance over low and high K concentration ranges
OsHAK1	Os04g0401700	LOC_Os04g32920	salt stress	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Expression of OsHAK1 is up-regulated by K deficiency or salt stress in various tissues, particularly in the root and shoot apical meristem, the epidermises and steles of root, and vascular bundles of shoot
OsHAK1	Os04g0401700	LOC_Os04g32920	salt stress	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	The root net high affinity K uptake of oshak1 mutants was sensitive to salt stress, but not to ammonium supply
OsHAK1	Os04g0401700	LOC_Os04g32920	tolerance	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.
OsHAK1	Os04g0401700	LOC_Os04g32920	tolerance	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	The positive relationship between K concentration and shoot biomass in the mutants suggests that OsHAK1 plays an essential role in K-mediated rice growth and salt tolerance over low and high K concentration ranges
OsHAK1	Os04g0401700	LOC_Os04g32920	stress	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Expression of OsHAK1 is up-regulated by K deficiency or salt stress in various tissues, particularly in the root and shoot apical meristem, the epidermises and steles of root, and vascular bundles of shoot
OsHAK1	Os04g0401700	LOC_Os04g32920	transporter	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.
OsHAK1	Os04g0401700	LOC_Os04g32920	biomass	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	The positive relationship between K concentration and shoot biomass in the mutants suggests that OsHAK1 plays an essential role in K-mediated rice growth and salt tolerance over low and high K concentration ranges
OsHAK1	Os04g0401700	LOC_Os04g32920	shoot apical meristem	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Expression of OsHAK1 is up-regulated by K deficiency or salt stress in various tissues, particularly in the root and shoot apical meristem, the epidermises and steles of root, and vascular bundles of shoot
OsHAK1	Os04g0401700	LOC_Os04g32920	potassium	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.
OsHAK1	Os04g0401700	LOC_Os04g32920	steles	Rice potassium transporter OsHAK1 is essential for maintaining potassium mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Expression of OsHAK1 is up-regulated by K deficiency or salt stress in various tissues, particularly in the root and shoot apical meristem, the epidermises and steles of root, and vascular bundles of shoot
OsHAK1	Os04g0401700	LOC_Os04g32920	transporter	Production of low-Cs(+) rice plants by inactivation of the K(+) transporter OsHAK1 with the CRISPR-Cas system.	Production of low-Cs(+) rice plants by inactivation of the K(+) transporter OsHAK1 with the CRISPR-Cas system.
OsHAK1	Os04g0401700	LOC_Os04g32920	transporter	Production of low-Cs(+) rice plants by inactivation of the K(+) transporter OsHAK1 with the CRISPR-Cas system.	 Here, we show that inactivation of the Cs(+) -permeable K(+) transporter OsHAK1 with the CRISPR-Cas system dramatically reduced Cs(+) uptake by rice plants
OsHAK1	Os04g0401700	LOC_Os04g32920	potassium	Cesium Uptake by Rice Roots Largely Depends Upon a Single Gene, HAK1, Which Encodes a Potassium Transporter.	 Our results demonstrate that, in rice roots, potassium transport systems other than OsHAK1 make little or no contribution to cesium uptake
OsHAK1	Os04g0401700	LOC_Os04g32920	seedlings	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Phenotypic analysis of OsHAK1 overexpression seedlings (Ox) demonstrated that they present better tolerance to drought stress than wild-type (WT)
OsHAK1	Os04g0401700	LOC_Os04g32920	growth	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Under drought conditions, OsHAK1 knockout mutants (KO) presented lower tolerance to the stress and displayed stunted growth at both the vegetative and reproductive stages
OsHAK1	Os04g0401700	LOC_Os04g32920	drought	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Under drought conditions, OsHAK1 knockout mutants (KO) presented lower tolerance to the stress and displayed stunted growth at both the vegetative and reproductive stages
OsHAK1	Os04g0401700	LOC_Os04g32920	drought	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Phenotypic analysis of OsHAK1 overexpression seedlings (Ox) demonstrated that they present better tolerance to drought stress than wild-type (WT)
OsHAK1	Os04g0401700	LOC_Os04g32920	drought	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Consequently, OsHAK1 can be considered to be used in molecular breeding for improvement of drought tolerance in rice
OsHAK1	Os04g0401700	LOC_Os04g32920	tolerance	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Under drought conditions, OsHAK1 knockout mutants (KO) presented lower tolerance to the stress and displayed stunted growth at both the vegetative and reproductive stages
OsHAK1	Os04g0401700	LOC_Os04g32920	tolerance	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Phenotypic analysis of OsHAK1 overexpression seedlings (Ox) demonstrated that they present better tolerance to drought stress than wild-type (WT)
OsHAK1	Os04g0401700	LOC_Os04g32920	tolerance	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Consequently, OsHAK1 can be considered to be used in molecular breeding for improvement of drought tolerance in rice
OsHAK1	Os04g0401700	LOC_Os04g32920	potassium	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Recently, we reported that the high-affinity potassium transporter OsHAK1 plays important roles in K acquisition and translocation in rice over low and high K concentration ranges, however, knowledge on the regulatory roles of OsHAK1 in osmotic/drought stress is limited
OsHAK1	Os04g0401700	LOC_Os04g32920	vegetative	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Under drought conditions, OsHAK1 knockout mutants (KO) presented lower tolerance to the stress and displayed stunted growth at both the vegetative and reproductive stages
OsHAK1	Os04g0401700	LOC_Os04g32920	drought tolerance	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Consequently, OsHAK1 can be considered to be used in molecular breeding for improvement of drought tolerance in rice
OsHAK1	Os04g0401700	LOC_Os04g32920	stress	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Recently, we reported that the high-affinity potassium transporter OsHAK1 plays important roles in K acquisition and translocation in rice over low and high K concentration ranges, however, knowledge on the regulatory roles of OsHAK1 in osmotic/drought stress is limited
OsHAK1	Os04g0401700	LOC_Os04g32920	stress	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Here, transcript levels of OsHAK1 were found transiently elevated by water deficit in roots and shoots, consistent with the enhanced GUS activity in transgenic plants under stress
OsHAK1	Os04g0401700	LOC_Os04g32920	stress	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Under drought conditions, OsHAK1 knockout mutants (KO) presented lower tolerance to the stress and displayed stunted growth at both the vegetative and reproductive stages
OsHAK1	Os04g0401700	LOC_Os04g32920	stress	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Phenotypic analysis of OsHAK1 overexpression seedlings (Ox) demonstrated that they present better tolerance to drought stress than wild-type (WT)
OsHAK1	Os04g0401700	LOC_Os04g32920	stress	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Furthermore, qPCR analysis revealed that OsHAK1 act as a positive regulator of the expression of stress-responsive genes as well as of two well-known rice channel genes (OsTPKb and OsAKT1) involved in K homeostasis and stress responses in transgenic plants under dehydration
OsHAK1	Os04g0401700	LOC_Os04g32920	reproductive	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Under drought conditions, OsHAK1 knockout mutants (KO) presented lower tolerance to the stress and displayed stunted growth at both the vegetative and reproductive stages
OsHAK1	Os04g0401700	LOC_Os04g32920	homeostasis	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Furthermore, qPCR analysis revealed that OsHAK1 act as a positive regulator of the expression of stress-responsive genes as well as of two well-known rice channel genes (OsTPKb and OsAKT1) involved in K homeostasis and stress responses in transgenic plants under dehydration
OsHAK1	Os04g0401700	LOC_Os04g32920	transporter	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Recently, we reported that the high-affinity potassium transporter OsHAK1 plays important roles in K acquisition and translocation in rice over low and high K concentration ranges, however, knowledge on the regulatory roles of OsHAK1 in osmotic/drought stress is limited
OsHAK1	Os04g0401700	LOC_Os04g32920	breeding	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Consequently, OsHAK1 can be considered to be used in molecular breeding for improvement of drought tolerance in rice
OsHAK1	Os04g0401700	LOC_Os04g32920	drought stress	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Recently, we reported that the high-affinity potassium transporter OsHAK1 plays important roles in K acquisition and translocation in rice over low and high K concentration ranges, however, knowledge on the regulatory roles of OsHAK1 in osmotic/drought stress is limited
OsHAK1	Os04g0401700	LOC_Os04g32920	drought stress	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Phenotypic analysis of OsHAK1 overexpression seedlings (Ox) demonstrated that they present better tolerance to drought stress than wild-type (WT)
OsHAK1	Os04g0401700	LOC_Os04g32920	drought stress 	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Recently, we reported that the high-affinity potassium transporter OsHAK1 plays important roles in K acquisition and translocation in rice over low and high K concentration ranges, however, knowledge on the regulatory roles of OsHAK1 in osmotic/drought stress is limited
OsHAK1	Os04g0401700	LOC_Os04g32920	drought stress 	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Phenotypic analysis of OsHAK1 overexpression seedlings (Ox) demonstrated that they present better tolerance to drought stress than wild-type (WT)
OsHAK1	Os04g0401700	LOC_Os04g32920	stress response	OsHAK1, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	 Furthermore, qPCR analysis revealed that OsHAK1 act as a positive regulator of the expression of stress-responsive genes as well as of two well-known rice channel genes (OsTPKb and OsAKT1) involved in K homeostasis and stress responses in transgenic plants under dehydration
OsHAK1	Os04g0401700	LOC_Os04g32920	leaf	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.	 Seedlings over-expressing OsHAK1 were more tolerant than wild type, displaying a superior photosynthetic rate, a higher leaf chlorophyll content, an enhanced accumulation of proline and a reduced level of lipid peroxidation
OsHAK1	Os04g0401700	LOC_Os04g32920	seedlings	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.	 Seedlings over-expressing OsHAK1 were more tolerant than wild type, displaying a superior photosynthetic rate, a higher leaf chlorophyll content, an enhanced accumulation of proline and a reduced level of lipid peroxidation
OsHAK1	Os04g0401700	LOC_Os04g32920	salinity	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.
OsHAK1	Os04g0401700	LOC_Os04g32920	salinity	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.	 At the transcriptome level, the over-expression of OsHAK1 stimulated a number of stress-responsive genes as well as four genes known to be involved in Na+ homeostasis and the salinity response (OsHKT1;5, OsSOS1, OsLti6a and OsLti6b)
OsHAK1	Os04g0401700	LOC_Os04g32920	salinity	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.	 The level of expression of OsHAK1 was correlated with Na+/K+ homeostasis, which implies that the gene should be explored a target for molecular approaches to the improvement of salinity tolerance in rice
OsHAK1	Os04g0401700	LOC_Os04g32920	tolerance	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.
OsHAK1	Os04g0401700	LOC_Os04g32920	tolerance	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.	 The level of expression of OsHAK1 was correlated with Na+/K+ homeostasis, which implies that the gene should be explored a target for molecular approaches to the improvement of salinity tolerance in rice
OsHAK1	Os04g0401700	LOC_Os04g32920	stress	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.	 When the stress was applied at booting through to maturity, the OsHAK1 over-expressors out-yielded wild type by 25%, and no negative pleiotropic effects were expressed in plants gown under non-saline conditions
OsHAK1	Os04g0401700	LOC_Os04g32920	homeostasis	Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar.	 At the transcriptome level, the over-expression of OsHAK1 stimulated a number of stress-responsive genes as well as four genes known to be involved in Na+ homeostasis and the salinity response (OsHKT1;5, OsSOS1, OsLti6a and OsLti6b)
OsHAK1	Os04g0401700	LOC_Os04g32920	leaf	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 The impaired allocation of sugar to the roots and spikelets caused by the knocking out of OsHAK1 was accompanied by a down-regulation in the leaf sheaths and panicle axes of genes encoding sucrose transporters (SUT genes), which are active in the phloem, as well as in the roots and spikelets of those encoding monosaccharide transporters (MST genes), which transport hexose sugars across the plant plasma membrane
OsHAK1	Os04g0401700	LOC_Os04g32920	root	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 Here, a comparison between wild type rice and OsHAK1 knockout mutants not only confirmed the known detrimental effect of the absence of OsHAK1 on root growth, pollen viability and fertility, but also showed that sucrose phosphate synthase activity was lowered, and the sucrose content of the leaves was markedly increased, due to a partial block on the up-loading of sucrose into the phloem
OsHAK1	Os04g0401700	LOC_Os04g32920	growth	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.
OsHAK1	Os04g0401700	LOC_Os04g32920	growth	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 Both the vegetative growth and reproductive success of rice are compromised by the absence of a functional copy of the gene OsHAK1
OsHAK1	Os04g0401700	LOC_Os04g32920	pollen	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 Here, a comparison between wild type rice and OsHAK1 knockout mutants not only confirmed the known detrimental effect of the absence of OsHAK1 on root growth, pollen viability and fertility, but also showed that sucrose phosphate synthase activity was lowered, and the sucrose content of the leaves was markedly increased, due to a partial block on the up-loading of sucrose into the phloem
OsHAK1	Os04g0401700	LOC_Os04g32920	panicle	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.
OsHAK1	Os04g0401700	LOC_Os04g32920	panicle	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 The impaired allocation of sugar to the roots and spikelets caused by the knocking out of OsHAK1 was accompanied by a down-regulation in the leaf sheaths and panicle axes of genes encoding sucrose transporters (SUT genes), which are active in the phloem, as well as in the roots and spikelets of those encoding monosaccharide transporters (MST genes), which transport hexose sugars across the plant plasma membrane
OsHAK1	Os04g0401700	LOC_Os04g32920	vegetative	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.
OsHAK1	Os04g0401700	LOC_Os04g32920	vegetative	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 Both the vegetative growth and reproductive success of rice are compromised by the absence of a functional copy of the gene OsHAK1
OsHAK1	Os04g0401700	LOC_Os04g32920	reproductive	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 Both the vegetative growth and reproductive success of rice are compromised by the absence of a functional copy of the gene OsHAK1
OsHAK1	Os04g0401700	LOC_Os04g32920	phloem	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 Here, a comparison between wild type rice and OsHAK1 knockout mutants not only confirmed the known detrimental effect of the absence of OsHAK1 on root growth, pollen viability and fertility, but also showed that sucrose phosphate synthase activity was lowered, and the sucrose content of the leaves was markedly increased, due to a partial block on the up-loading of sucrose into the phloem
OsHAK1	Os04g0401700	LOC_Os04g32920	fertility	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.
OsHAK1	Os04g0401700	LOC_Os04g32920	plasma membrane	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 The impaired allocation of sugar to the roots and spikelets caused by the knocking out of OsHAK1 was accompanied by a down-regulation in the leaf sheaths and panicle axes of genes encoding sucrose transporters (SUT genes), which are active in the phloem, as well as in the roots and spikelets of those encoding monosaccharide transporters (MST genes), which transport hexose sugars across the plant plasma membrane
OsHAK1	Os04g0401700	LOC_Os04g32920	sugar	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.
OsHAK1	Os04g0401700	LOC_Os04g32920	sugar	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 The impaired allocation of sugar to the roots and spikelets caused by the knocking out of OsHAK1 was accompanied by a down-regulation in the leaf sheaths and panicle axes of genes encoding sucrose transporters (SUT genes), which are active in the phloem, as well as in the roots and spikelets of those encoding monosaccharide transporters (MST genes), which transport hexose sugars across the plant plasma membrane
OsHAK1	Os04g0401700	LOC_Os04g32920	sugar	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 The conclusion was that the failure to fully supply the demand of the mutant's sink organs for assimilate was responsible for its compromised phenotype, and that the deficiency in K uptake induced by the loss of OsHAK1 functionality was responsible for the disruption of sugar metabolism
OsHAK1	Os04g0401700	LOC_Os04g32920	phosphate	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 Here, a comparison between wild type rice and OsHAK1 knockout mutants not only confirmed the known detrimental effect of the absence of OsHAK1 on root growth, pollen viability and fertility, but also showed that sucrose phosphate synthase activity was lowered, and the sucrose content of the leaves was markedly increased, due to a partial block on the up-loading of sucrose into the phloem
OsHAK1	Os04g0401700	LOC_Os04g32920	sucrose	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 Here, a comparison between wild type rice and OsHAK1 knockout mutants not only confirmed the known detrimental effect of the absence of OsHAK1 on root growth, pollen viability and fertility, but also showed that sucrose phosphate synthase activity was lowered, and the sucrose content of the leaves was markedly increased, due to a partial block on the up-loading of sucrose into the phloem
OsHAK1	Os04g0401700	LOC_Os04g32920	sucrose	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 The impaired allocation of sugar to the roots and spikelets caused by the knocking out of OsHAK1 was accompanied by a down-regulation in the leaf sheaths and panicle axes of genes encoding sucrose transporters (SUT genes), which are active in the phloem, as well as in the roots and spikelets of those encoding monosaccharide transporters (MST genes), which transport hexose sugars across the plant plasma membrane
OsHAK1	Os04g0401700	LOC_Os04g32920	sucrose transporter	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	 The impaired allocation of sugar to the roots and spikelets caused by the knocking out of OsHAK1 was accompanied by a down-regulation in the leaf sheaths and panicle axes of genes encoding sucrose transporters (SUT genes), which are active in the phloem, as well as in the roots and spikelets of those encoding monosaccharide transporters (MST genes), which transport hexose sugars across the plant plasma membrane
OsHAK1	Os04g0401700	LOC_Os04g32920	development	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK1	Os04g0401700	LOC_Os04g32920	fertility	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK1	Os04g0401700	LOC_Os04g32920	pollen	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Knockout of either OsHAK26 or plasma membrane located H+-K+ symporter gene OsHAK1 or OsHAK5 in both Nipponbare and Dongjin cultivars caused distorted anthers, reduced number and germination rate of pollen grains
OsHAK1	Os04g0401700	LOC_Os04g32920	pollen	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK1	Os04g0401700	LOC_Os04g32920	seed	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK1	Os04g0401700	LOC_Os04g32920	plasma membrane	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Knockout of either OsHAK26 or plasma membrane located H+-K+ symporter gene OsHAK1 or OsHAK5 in both Nipponbare and Dongjin cultivars caused distorted anthers, reduced number and germination rate of pollen grains
OsHAK1	Os04g0401700	LOC_Os04g32920	pollen development	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK1	Os04g0401700	LOC_Os04g32920	pollen wall	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK10	Os06g0625900|Os06g0625800|Os06g0626050	LOC_Os06g42030	salt	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	The up-regulation of OsHKT1;1, OsHAK10 and OsHAK16 might contribute to accumulation of Na+ in old leaves under salt stress
OsHAK10	Os06g0625900|Os06g0625800|Os06g0626050	LOC_Os06g42030	transporter	Inventory and functional characterization of the HAK potassium transporters of rice	Phylogenetic analysis of the encoded transporters reveals a great diversity among them, and three distant transporters, OsHAK1, OsHAK7, and OsHAK10, were expressed in yeast (Saccharomyces cerevisiae) and bacterial mutants to determine their functions
OsHAK10	Os06g0625900|Os06g0625800|Os06g0626050	LOC_Os06g42030	salt stress	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	The up-regulation of OsHKT1;1, OsHAK10 and OsHAK16 might contribute to accumulation of Na+ in old leaves under salt stress
OsHAK12	Os08g0206400	LOC_Os08g10550	xylem	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	 The Oshak12 mutants showed sensitivity to salt toxicity and accumulated more Na(+) in the xylem sap, leading to excessive Na(+) in the shoots and less Na(+) in the roots
OsHAK12	Os08g0206400	LOC_Os08g10550	xylem	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	 These findings indicate that OsHAK12 mediates Na(+) exclusion from shoot, possibly by retrieving Na(+) from xylem vessel thereby reducing Na(+) content in the shoots
OsHAK12	Os08g0206400	LOC_Os08g10550	root	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	 In addition, OsHAK12 was strongly expressed in the root vascular tissues and induced by salt stress
OsHAK12	Os08g0206400	LOC_Os08g10550	salt	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.
OsHAK12	Os08g0206400	LOC_Os08g10550	salt	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	 The Oshak12 mutants showed sensitivity to salt toxicity and accumulated more Na(+) in the xylem sap, leading to excessive Na(+) in the shoots and less Na(+) in the roots
OsHAK12	Os08g0206400	LOC_Os08g10550	salt	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	 In addition, OsHAK12 was strongly expressed in the root vascular tissues and induced by salt stress
OsHAK12	Os08g0206400	LOC_Os08g10550	salt stress	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.
OsHAK12	Os08g0206400	LOC_Os08g10550	salt stress	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	 In addition, OsHAK12 was strongly expressed in the root vascular tissues and induced by salt stress
OsHAK12	Os08g0206400	LOC_Os08g10550	stress	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	 In addition, OsHAK12 was strongly expressed in the root vascular tissues and induced by salt stress
OsHAK12	Os08g0206400	LOC_Os08g10550	transporter	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.
OsHAK12	Os08g0206400	LOC_Os08g10550	transporter	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	 Unlike typical HAK family transporters that transport K(+), OsHAK12 is a Na(+)-permeable plasma membrane transporter
OsHAK12	Os08g0206400	LOC_Os08g10550	plasma membrane	Rice Na(+)-Permeable Transporter OsHAK12 Mediates Shoots Na(+) Exclusion in Response to Salt Stress.	 Unlike typical HAK family transporters that transport K(+), OsHAK12 is a Na(+)-permeable plasma membrane transporter
OsHAK16	Os03g0575200	LOC_Os03g37840	salt stress	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	The up-regulation of OsHKT1;1, OsHAK10 and OsHAK16 might contribute to accumulation of Na+ in old leaves under salt stress
OsHAK16	Os03g0575200	LOC_Os03g37840	salt	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	The up-regulation of OsHKT1;1, OsHAK10 and OsHAK16 might contribute to accumulation of Na+ in old leaves under salt stress
OsHAK16	Os03g0575200	LOC_Os03g37840	root	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 knockout (KO) dramatically reduced root K net uptake rate and growth at both 0
OsHAK16	Os03g0575200	LOC_Os03g37840	root	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 disruption decreased while its overexpression increased K concentration in root slightly but in shoot remarkably
OsHAK16	Os03g0575200	LOC_Os03g37840	growth	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 knockout (KO) dramatically reduced root K net uptake rate and growth at both 0
OsHAK16	Os03g0575200	LOC_Os03g37840	growth	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	1 mM and 1 mM K supplies, while OsHAK16 overexpression (OX) increased total K uptake and growth only at 0
OsHAK16	Os03g0575200	LOC_Os03g37840	growth	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Expression of OsHAK16 enhanced the growth of high salt-sensitive yeast mutant by increasing its K but no Na content
OsHAK16	Os03g0575200	LOC_Os03g37840	shoot	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 mediates K uptake and root-to-shoot translocation in a broad range of external K concentrations, thereby contributing to the maintenance of K homeostasis and salt tolerance in the rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	shoot	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 disruption decreased while its overexpression increased K concentration in root slightly but in shoot remarkably
OsHAK16	Os03g0575200	LOC_Os03g37840	shoot	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Taking all these together, we conclude that OsHAK16 plays crucial roles in maintaining K homeostasis and salt tolerance in rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	salt	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.
OsHAK16	Os03g0575200	LOC_Os03g37840	salt	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 mediates K uptake and root-to-shoot translocation in a broad range of external K concentrations, thereby contributing to the maintenance of K homeostasis and salt tolerance in the rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	salt	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Transcriptional expression of OsHAK16 was up-regulated by K deficiency or salt stress
OsHAK16	Os03g0575200	LOC_Os03g37840	salt	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Taking all these together, we conclude that OsHAK16 plays crucial roles in maintaining K homeostasis and salt tolerance in rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	tolerance	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 mediates K uptake and root-to-shoot translocation in a broad range of external K concentrations, thereby contributing to the maintenance of K homeostasis and salt tolerance in the rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	tolerance	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Taking all these together, we conclude that OsHAK16 plays crucial roles in maintaining K homeostasis and salt tolerance in rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	potassium	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.
OsHAK16	Os03g0575200	LOC_Os03g37840	salt tolerance	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.
OsHAK16	Os03g0575200	LOC_Os03g37840	salt tolerance	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 mediates K uptake and root-to-shoot translocation in a broad range of external K concentrations, thereby contributing to the maintenance of K homeostasis and salt tolerance in the rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	salt tolerance	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Taking all these together, we conclude that OsHAK16 plays crucial roles in maintaining K homeostasis and salt tolerance in rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	salt stress	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Transcriptional expression of OsHAK16 was up-regulated by K deficiency or salt stress
OsHAK16	Os03g0575200	LOC_Os03g37840	stress	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Transcriptional expression of OsHAK16 was up-regulated by K deficiency or salt stress
OsHAK16	Os03g0575200	LOC_Os03g37840	homeostasis	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.
OsHAK16	Os03g0575200	LOC_Os03g37840	homeostasis	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 mediates K uptake and root-to-shoot translocation in a broad range of external K concentrations, thereby contributing to the maintenance of K homeostasis and salt tolerance in the rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	homeostasis	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Taking all these together, we conclude that OsHAK16 plays crucial roles in maintaining K homeostasis and salt tolerance in rice shoot
OsHAK16	Os03g0575200	LOC_Os03g37840	plasma membrane	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	OsHAK16 is localized at the plasma membrane
OsHAK16	Os03g0575200	LOC_Os03g37840	potassium uptake	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.
OsHAK2	Os01g0935500	LOC_Os01g70940	transporter	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	Here, in search for Na(+)-insensitive K(+) transporter for this purpose, bacterial expression system was used to characterize two K(+) transporters, OsHAK2 and OsHAK5, isolated from rice (Oryza sativa cv
OsHAK2	Os01g0935500	LOC_Os01g70940	transporter	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	Under the condition with a large amount of extracellular Na(+), we found that OsHAK5 functions as a Na(+)-insensitive K(+) transporter, while OsHAK2 is sensitive to extracellular Na(+) and exhibits higher Na(+) over K(+) transport activities
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	xylem	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Our analyses of subcellular localizations and expression patterns showed that OsHAK21 was localized in the plasma membrane, and expressed in xylem parenchyma and individual endodermal cells (putative passage cells)
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Here, we report a significant inducement of OsHAK21 expression by high salinity treatment, and provide genetic evidence of the involvement of OsHAK21 in rice salt tolerance
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Here, we report a significant inducement of OsHAK21 expression by high salinity treatment, and provide genetic evidence of the involvement of OsHAK21 in rice salt tolerance
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Disruption of OsHAK21 rendered plants sensitive to salt stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	These results demonstrate that OsHAK21 may mediate K(+) absorption by the plasma membrane, and play crucial roles in the maintenance of the Na(+) /K(+) homeostasis in rice under salt stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt tolerance	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Here, we report a significant inducement of OsHAK21 expression by high salinity treatment, and provide genetic evidence of the involvement of OsHAK21 in rice salt tolerance
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt stress	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt stress	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Disruption of OsHAK21 rendered plants sensitive to salt stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt stress	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	These results demonstrate that OsHAK21 may mediate K(+) absorption by the plasma membrane, and play crucial roles in the maintenance of the Na(+) /K(+) homeostasis in rice under salt stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	tolerance	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	tolerance	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Here, we report a significant inducement of OsHAK21 expression by high salinity treatment, and provide genetic evidence of the involvement of OsHAK21 in rice salt tolerance
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	stress	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	stress	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Disruption of OsHAK21 rendered plants sensitive to salt stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	stress	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	These results demonstrate that OsHAK21 may mediate K(+) absorption by the plasma membrane, and play crucial roles in the maintenance of the Na(+) /K(+) homeostasis in rice under salt stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	homeostasis	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	homeostasis	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	These results demonstrate that OsHAK21 may mediate K(+) absorption by the plasma membrane, and play crucial roles in the maintenance of the Na(+) /K(+) homeostasis in rice under salt stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	transporter	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	transporter	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Further functional characterizations of OsHAK21 in K(+) uptake-deficient yeast and Arabidopsis revealed that OsHAK21 possesses K(+) transporter activity
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	plasma membrane	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Our analyses of subcellular localizations and expression patterns showed that OsHAK21 was localized in the plasma membrane, and expressed in xylem parenchyma and individual endodermal cells (putative passage cells)
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	plasma membrane	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	These results demonstrate that OsHAK21 may mediate K(+) absorption by the plasma membrane, and play crucial roles in the maintenance of the Na(+) /K(+) homeostasis in rice under salt stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	potassium	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	xylem parenchyma	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Our analyses of subcellular localizations and expression patterns showed that OsHAK21 was localized in the plasma membrane, and expressed in xylem parenchyma and individual endodermal cells (putative passage cells)
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seedling	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 In this study, we mapped one major QTL qSE3 for seed germination and seedling establishment under salinity stress in rice
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seedling	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 All of these seed physiological changes modulated by qSE3 might contribute to seed germination and seedling establishment under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seedling	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 This study provides important insights into the roles of qSE3 in seed germination and seedling establishment under salinity stress and facilitates the practical use of qSE3 in rice breeding
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seed	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 In this study, we mapped one major QTL qSE3 for seed germination and seedling establishment under salinity stress in rice
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seed	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 All of these seed physiological changes modulated by qSE3 might contribute to seed germination and seedling establishment under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seed	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a HAP3 haplotype of qSE3 that was positively correlated with seed germination under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seed	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 This study provides important insights into the roles of qSE3 in seed germination and seedling establishment under salinity stress and facilitates the practical use of qSE3 in rice breeding
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	map-based cloning	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 To understand the molecular basis of this QTL, we isolated qSE3 by map-based cloning and found that it encodes a K+ transporter gene, OsHAK21
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 In this study, we mapped one major QTL qSE3 for seed germination and seedling establishment under salinity stress in rice
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 The expression of qSE3 was significantly up-regulated by salinity stress in germinating seeds
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Physiological analysis suggested that qSE3 significantly increased K+ and Na+ uptake in germinating seeds under salinity stress, resulting in increased abscisic acid (ABA) biosynthesis and activated ABA signaling responses
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Furthermore, qSE3 significantly decreased the H2 O2 level in germinating seeds under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 All of these seed physiological changes modulated by qSE3 might contribute to seed germination and seedling establishment under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a HAP3 haplotype of qSE3 that was positively correlated with seed germination under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 This study provides important insights into the roles of qSE3 in seed germination and seedling establishment under salinity stress and facilitates the practical use of qSE3 in rice breeding
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seed germination	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 In this study, we mapped one major QTL qSE3 for seed germination and seedling establishment under salinity stress in rice
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seed germination	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 All of these seed physiological changes modulated by qSE3 might contribute to seed germination and seedling establishment under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seed germination	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a HAP3 haplotype of qSE3 that was positively correlated with seed germination under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	seed germination	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 This study provides important insights into the roles of qSE3 in seed germination and seedling establishment under salinity stress and facilitates the practical use of qSE3 in rice breeding
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	 ABA 	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Physiological analysis suggested that qSE3 significantly increased K+ and Na+ uptake in germinating seeds under salinity stress, resulting in increased abscisic acid (ABA) biosynthesis and activated ABA signaling responses
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 In this study, we mapped one major QTL qSE3 for seed germination and seedling establishment under salinity stress in rice
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 The expression of qSE3 was significantly up-regulated by salinity stress in germinating seeds
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Furthermore, qSE3 significantly decreased the H2 O2 level in germinating seeds under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 All of these seed physiological changes modulated by qSE3 might contribute to seed germination and seedling establishment under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a HAP3 haplotype of qSE3 that was positively correlated with seed germination under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 This study provides important insights into the roles of qSE3 in seed germination and seedling establishment under salinity stress and facilitates the practical use of qSE3 in rice breeding
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 In this study, we mapped one major QTL qSE3 for seed germination and seedling establishment under salinity stress in rice
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 The expression of qSE3 was significantly up-regulated by salinity stress in germinating seeds
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Physiological analysis suggested that qSE3 significantly increased K+ and Na+ uptake in germinating seeds under salinity stress, resulting in increased abscisic acid (ABA) biosynthesis and activated ABA signaling responses
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Furthermore, qSE3 significantly decreased the H2 O2 level in germinating seeds under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 All of these seed physiological changes modulated by qSE3 might contribute to seed germination and seedling establishment under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a HAP3 haplotype of qSE3 that was positively correlated with seed germination under salinity stress
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salinity stress	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 This study provides important insights into the roles of qSE3 in seed germination and seedling establishment under salinity stress and facilitates the practical use of qSE3 in rice breeding
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	transporter	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 To understand the molecular basis of this QTL, we isolated qSE3 by map-based cloning and found that it encodes a K+ transporter gene, OsHAK21
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	breeding	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 This study provides important insights into the roles of qSE3 in seed germination and seedling establishment under salinity stress and facilitates the practical use of qSE3 in rice breeding
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	ABA	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Physiological analysis suggested that qSE3 significantly increased K+ and Na+ uptake in germinating seeds under salinity stress, resulting in increased abscisic acid (ABA) biosynthesis and activated ABA signaling responses
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	abscisic acid	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	 Physiological analysis suggested that qSE3 significantly increased K+ and Na+ uptake in germinating seeds under salinity stress, resulting in increased abscisic acid (ABA) biosynthesis and activated ABA signaling responses
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt	Natural variations of chlorophyll fluorescence and ion transporter genes influenced the differential response of japonica rice germplasm with different salt tolerances.	 Haplotype analysis revealed four key variations associated with salt tolerance, including an SNP (+1605 bp) within OsABCI7 exon, an SSR (-1231 bp) within OsHAK21 promoter, an indel site at OsNHX1 promoter (-822 bp), and an SNP (-1866 bp) within OsAKT2 promoter
OsHAK21|qSE3	Os03g0576200	LOC_Os03g37930	salt tolerance	Natural variations of chlorophyll fluorescence and ion transporter genes influenced the differential response of japonica rice germplasm with different salt tolerances.	 Haplotype analysis revealed four key variations associated with salt tolerance, including an SNP (+1605 bp) within OsABCI7 exon, an SSR (-1231 bp) within OsHAK21 promoter, an indel site at OsNHX1 promoter (-822 bp), and an SNP (-1866 bp) within OsAKT2 promoter
OsHAK26	Os08g0510300	LOC_Os08g39950	development	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK26	Os08g0510300	LOC_Os08g39950	fertility	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK26	Os08g0510300	LOC_Os08g39950	pollen	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Knockout of either OsHAK26 or plasma membrane located H+-K+ symporter gene OsHAK1 or OsHAK5 in both Nipponbare and Dongjin cultivars caused distorted anthers, reduced number and germination rate of pollen grains
OsHAK26	Os08g0510300	LOC_Os08g39950	pollen	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK26	Os08g0510300	LOC_Os08g39950	seed	Function of Rice HAK Transporters in Pollen Development and Fertility.	 In this study, we report that OsHAK26 is preferentially expressed in anthers and seed husks and located in Golgi apparatus
OsHAK26	Os08g0510300	LOC_Os08g39950	seed	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK26	Os08g0510300	LOC_Os08g39950	plasma membrane	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Knockout of either OsHAK26 or plasma membrane located H+-K+ symporter gene OsHAK1 or OsHAK5 in both Nipponbare and Dongjin cultivars caused distorted anthers, reduced number and germination rate of pollen grains
OsHAK26	Os08g0510300	LOC_Os08g39950	pollen development	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK26	Os08g0510300	LOC_Os08g39950	pollen wall	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK5	Os01g0930400	LOC_Os01g70490	potassium	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells
OsHAK5	Os01g0930400	LOC_Os01g70490	salt tolerance	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	These results suggest that the plasma-membrane localized Na(+) insensitive K(+) transporters, similar to OsHAK5 identified here, could be used as a tool to enhance salt tolerance in plant cells
OsHAK5	Os01g0930400	LOC_Os01g70490	salt tolerance	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	Here, in search for Na(+)-insensitive K(+) transporter for this purpose, bacterial expression system was used to characterize two K(+) transporters, OsHAK2 and OsHAK5, isolated from rice (Oryza sativa cv
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	Under the condition with a large amount of extracellular Na(+), we found that OsHAK5 functions as a Na(+)-insensitive K(+) transporter, while OsHAK2 is sensitive to extracellular Na(+) and exhibits higher Na(+) over K(+) transport activities
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	These results suggest that the plasma-membrane localized Na(+) insensitive K(+) transporters, similar to OsHAK5 identified here, could be used as a tool to enhance salt tolerance in plant cells
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells
OsHAK5	Os01g0930400	LOC_Os01g70490	salt	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	These results suggest that the plasma-membrane localized Na(+) insensitive K(+) transporters, similar to OsHAK5 identified here, could be used as a tool to enhance salt tolerance in plant cells
OsHAK5	Os01g0930400	LOC_Os01g70490	salt	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells
OsHAK5	Os01g0930400	LOC_Os01g70490	xylem	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.	The contribution of OsHAK5 to K mobilization within the rice plant was confirmed further by the change of K concentration in the xylem sap and K distribution in the transgenic lines when K was removed completely from the external solution
OsHAK5	Os01g0930400	LOC_Os01g70490	root	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.	A β-glucuronidase reporter driven by the OsHAK5 native promoter indicated OsHAK5 expression in various tissue organs from root to seed, abundantly in root epidermis and stele, the vascular tissues, and mesophyll cells
OsHAK5	Os01g0930400	LOC_Os01g70490	salt	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.	Overexpression of OsHAK5 increased the K-sodium concentration ratio in the shoots and salt stress tolerance (shoot growth), while knockout of OsHAK5 decreased the K-sodium concentration ratio in the shoots, resulting in sensitivity to salt stress
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.
OsHAK5	Os01g0930400	LOC_Os01g70490	tolerance	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.	Overexpression of OsHAK5 increased the K-sodium concentration ratio in the shoots and salt stress tolerance (shoot growth), while knockout of OsHAK5 decreased the K-sodium concentration ratio in the shoots, resulting in sensitivity to salt stress
OsHAK5	Os01g0930400	LOC_Os01g70490	potassium	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.
OsHAK5	Os01g0930400	LOC_Os01g70490	stress	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.	Overexpression of OsHAK5 increased the K-sodium concentration ratio in the shoots and salt stress tolerance (shoot growth), while knockout of OsHAK5 decreased the K-sodium concentration ratio in the shoots, resulting in sensitivity to salt stress
OsHAK5	Os01g0930400	LOC_Os01g70490	epidermis	The role of a potassium transporter OsHAK5 in potassium acquisition and transport from roots to shoots in rice at low potassium supply levels.	A β-glucuronidase reporter driven by the OsHAK5 native promoter indicated OsHAK5 expression in various tissue organs from root to seed, abundantly in root epidermis and stele, the vascular tissues, and mesophyll cells
OsHAK5	Os01g0930400	LOC_Os01g70490	root	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	 Here, we show that inactivation of OsHAK5, a rice K+ transporter gene, decreased rootward and shootward PAT, tiller number, and the length of both lateral roots and root hairs, while OsHAK5 overexpression increased PAT, tiller number, and root hair length, irrespective of the K+ supply
OsHAK5	Os01g0930400	LOC_Os01g70490	auxin	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes
OsHAK5	Os01g0930400	LOC_Os01g70490	auxin	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	 These findings highlight the dual roles of OsHAK5 in altering cellular chemiosmotic gradients (generated continuously by PM H+-ATPase) and regulating ATP-dependent auxin transport
OsHAK5	Os01g0930400	LOC_Os01g70490	tiller	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	 Here, we show that inactivation of OsHAK5, a rice K+ transporter gene, decreased rootward and shootward PAT, tiller number, and the length of both lateral roots and root hairs, while OsHAK5 overexpression increased PAT, tiller number, and root hair length, irrespective of the K+ supply
OsHAK5	Os01g0930400	LOC_Os01g70490	potassium	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes
OsHAK5	Os01g0930400	LOC_Os01g70490	yield	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	 Both functions may underlie the prominent effect of OsHAK5 on rice architecture, which may be exploited in the future to increase crop yield via genetic manipulations
OsHAK5	Os01g0930400	LOC_Os01g70490	architecture	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	 Here, we show that inactivation of OsHAK5, a rice K+ transporter gene, decreased rootward and shootward PAT, tiller number, and the length of both lateral roots and root hairs, while OsHAK5 overexpression increased PAT, tiller number, and root hair length, irrespective of the K+ supply
OsHAK5	Os01g0930400	LOC_Os01g70490	auxin transport	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	 These findings highlight the dual roles of OsHAK5 in altering cellular chemiosmotic gradients (generated continuously by PM H+-ATPase) and regulating ATP-dependent auxin transport
OsHAK5	Os01g0930400	LOC_Os01g70490	lateral root	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	 Here, we show that inactivation of OsHAK5, a rice K+ transporter gene, decreased rootward and shootward PAT, tiller number, and the length of both lateral roots and root hairs, while OsHAK5 overexpression increased PAT, tiller number, and root hair length, irrespective of the K+ supply
OsHAK5	Os01g0930400	LOC_Os01g70490	tiller number	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	 Here, we show that inactivation of OsHAK5, a rice K+ transporter gene, decreased rootward and shootward PAT, tiller number, and the length of both lateral roots and root hairs, while OsHAK5 overexpression increased PAT, tiller number, and root hair length, irrespective of the K+ supply
OsHAK5	Os01g0930400	LOC_Os01g70490	root hair	The Potassium Transporter OsHAK5 Alters Rice Architecture via ATP-Dependent Transmembrane Auxin Fluxes	 Here, we show that inactivation of OsHAK5, a rice K+ transporter gene, decreased rootward and shootward PAT, tiller number, and the length of both lateral roots and root hairs, while OsHAK5 overexpression increased PAT, tiller number, and root hair length, irrespective of the K+ supply
OsHAK5	Os01g0930400	LOC_Os01g70490	resistance	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).
OsHAK5	Os01g0930400	LOC_Os01g70490	resistance	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).	 In contrast, overexpression of OsHAK5 enhanced resistance to RGSV infection
OsHAK5	Os01g0930400	LOC_Os01g70490	resistance	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).	 The accumulation of ROS is perhaps involved in the induction of host resistance against RGSV infection in OsHAK5 transgenic overexpression rice plants
OsHAK5	Os01g0930400	LOC_Os01g70490	resistance	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).	 These findings indicate the crucial role of OsHAK5 in host resistance to virus infection
OsHAK5	Os01g0930400	LOC_Os01g70490	potassium	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).
OsHAK5	Os01g0930400	LOC_Os01g70490	reactive oxygen species	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).	 Our analysis of reactive oxygen species (ROS) including H(2) O(2) and O(2-) , by DAB and NBT staining, respectively, indicated that RGSV infection as well as OsHAK5 overexpression increased ROS accumulation in rice leaves
OsHAK5	Os01g0930400	LOC_Os01g70490	development	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK5	Os01g0930400	LOC_Os01g70490	grain	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Seed-setting rate assay by reciprocal cross-pollination between the mutants of oshak26, oshak1, oshak5 and their wild types confirmed that each HAK transporter is foremost for pollen viability, seed-setting and grain yield
OsHAK5	Os01g0930400	LOC_Os01g70490	fertility	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK5	Os01g0930400	LOC_Os01g70490	pollen	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Knockout of either OsHAK26 or plasma membrane located H+-K+ symporter gene OsHAK1 or OsHAK5 in both Nipponbare and Dongjin cultivars caused distorted anthers, reduced number and germination rate of pollen grains
OsHAK5	Os01g0930400	LOC_Os01g70490	pollen	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Seed-setting rate assay by reciprocal cross-pollination between the mutants of oshak26, oshak1, oshak5 and their wild types confirmed that each HAK transporter is foremost for pollen viability, seed-setting and grain yield
OsHAK5	Os01g0930400	LOC_Os01g70490	pollen	Function of Rice HAK Transporters in Pollen Development and Fertility.	 In vitro assay revealed that the pollen germination rate of oshak5 was dramatically affected by external K+ concentration
OsHAK5	Os01g0930400	LOC_Os01g70490	pollen	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK5	Os01g0930400	LOC_Os01g70490	seed	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK5	Os01g0930400	LOC_Os01g70490	grain yield	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Seed-setting rate assay by reciprocal cross-pollination between the mutants of oshak26, oshak1, oshak5 and their wild types confirmed that each HAK transporter is foremost for pollen viability, seed-setting and grain yield
OsHAK5	Os01g0930400	LOC_Os01g70490	yield	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Seed-setting rate assay by reciprocal cross-pollination between the mutants of oshak26, oshak1, oshak5 and their wild types confirmed that each HAK transporter is foremost for pollen viability, seed-setting and grain yield
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Seed-setting rate assay by reciprocal cross-pollination between the mutants of oshak26, oshak1, oshak5 and their wild types confirmed that each HAK transporter is foremost for pollen viability, seed-setting and grain yield
OsHAK5	Os01g0930400	LOC_Os01g70490	plasma membrane	Function of Rice HAK Transporters in Pollen Development and Fertility.	 Knockout of either OsHAK26 or plasma membrane located H+-K+ symporter gene OsHAK1 or OsHAK5 in both Nipponbare and Dongjin cultivars caused distorted anthers, reduced number and germination rate of pollen grains
OsHAK5	Os01g0930400	LOC_Os01g70490	pollen development	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK5	Os01g0930400	LOC_Os01g70490	pollen wall	Function of Rice HAK Transporters in Pollen Development and Fertility.	 The results suggest that the role of OsHAK26 in maintaining pollen development and fertility may relate to its proper cargo sorting for construction of pollen walls, while the role of OsHAK1 and OsHAK5 in maintaining seed production likely relates to their transcellular K+ transport activity
OsHAK5	Os01g0930400	LOC_Os01g70490	growth	Rice OsHAK5 is a major potassium transporter that functions in potassium uptake with high specificity but contributes less to cesium uptake.	0 m m and less K, the growth of KD was significantly suppressed, suggesting that OsHAK5 greatly contributed to K absorption under limited K conditions
OsHAK5	Os01g0930400	LOC_Os01g70490	potassium	Rice OsHAK5 is a major potassium transporter that functions in potassium uptake with high specificity but contributes less to cesium uptake.	Rice OsHAK5 is a major potassium transporter that functions in potassium uptake with high specificity but contributes less to cesium uptake.
OsHAK5	Os01g0930400	LOC_Os01g70490	transporter	Rice OsHAK5 is a major potassium transporter that functions in potassium uptake with high specificity but contributes less to cesium uptake.	Rice OsHAK5 is a major potassium transporter that functions in potassium uptake with high specificity but contributes less to cesium uptake.
OsHAK5	Os01g0930400	LOC_Os01g70490	potassium uptake	Rice OsHAK5 is a major potassium transporter that functions in potassium uptake with high specificity but contributes less to cesium uptake.	Rice OsHAK5 is a major potassium transporter that functions in potassium uptake with high specificity but contributes less to cesium uptake.
OsHAK8	Os03g0337500	LOC_Os03g21890	potassium	Rice Potassium Transporter OsHAK8 Mediates K + Uptake and Translocation in Response to Low K + Stress	Rice Potassium Transporter OsHAK8 Mediates K + Uptake and Translocation in Response to Low K + Stress
OsHAK8	Os03g0337500	LOC_Os03g21890	stress	Rice Potassium Transporter OsHAK8 Mediates K + Uptake and Translocation in Response to Low K + Stress	Rice Potassium Transporter OsHAK8 Mediates K + Uptake and Translocation in Response to Low K + Stress
OsHAK8	Os03g0337500	LOC_Os03g21890	transporter	Rice Potassium Transporter OsHAK8 Mediates K + Uptake and Translocation in Response to Low K + Stress	Rice Potassium Transporter OsHAK8 Mediates K + Uptake and Translocation in Response to Low K + Stress
OsHAK8	Os03g0337500	LOC_Os03g21890	transporter	Rice Potassium Transporter OsHAK8 Mediates K + Uptake and Translocation in Response to Low K + Stress	As the OsHAK8 gene was broadly expressed in different cell types in the roots and its protein was targeted to the plasma membrane, we propose that OsHAK8 serves as a major transporter for both uptake and root-to-shoot translocation in rice plants
OsHAK8	Os03g0337500	LOC_Os03g21890	plasma membrane	Rice Potassium Transporter OsHAK8 Mediates K + Uptake and Translocation in Response to Low K + Stress	As the OsHAK8 gene was broadly expressed in different cell types in the roots and its protein was targeted to the plasma membrane, we propose that OsHAK8 serves as a major transporter for both uptake and root-to-shoot translocation in rice plants
OsHAL3	Os06g0199500	LOC_Os06g09910	growth	OsHAL3 mediates a new pathway in the light-regulated growth of rice	OsHAL3 mediates a new pathway in the light-regulated growth of rice
OsHAL3	Os06g0199500	LOC_Os06g09910	cell division	OsHAL3 mediates a new pathway in the light-regulated growth of rice	Further investigation suggested that OsHAL3 promotes cell division by recruiting a ubiquitin system, rather than by its 4'-phosphopantothenoylcysteine (PPC) decarboxylase activity
OsHAL3	Os06g0199500	LOC_Os06g09910	nucleus	OsHAL3, a new component interacts with the floral regulator Hd1 to activate flowering in rice.	OsHAL3 and Hd1 colocalized to the nucleus in vivo and interacted physically in the dark, but the interaction was inhibited by white or blue light
OsHAL3	Os06g0199500	LOC_Os06g09910	salt	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Meanwhile, we demonstrated that STH1 forms a protein complex with D3 and a vital regulatory factor in salt tolerance, OsHAL3, to regulate the protein abundance of OsHAL3 via the 26S proteasome pathway
OsHAL3	Os06g0199500	LOC_Os06g09910	salt tolerance	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Meanwhile, we demonstrated that STH1 forms a protein complex with D3 and a vital regulatory factor in salt tolerance, OsHAL3, to regulate the protein abundance of OsHAL3 via the 26S proteasome pathway
OsHAM4|SCL6-I	Os06g0105350	LOC_Os06g01620	drought	Rice microRNA171f/SCL6 module enhances drought tolerance by regulation of flavonoid biosynthesis genes.	 Our findings indicate that osa-miR171 plays a role in drought tolerance by regulating SCL6-I and SCL6-II transcript levels
OsHAM4|SCL6-I	Os06g0105350	LOC_Os06g01620	tolerance	Rice microRNA171f/SCL6 module enhances drought tolerance by regulation of flavonoid biosynthesis genes.	 Our findings indicate that osa-miR171 plays a role in drought tolerance by regulating SCL6-I and SCL6-II transcript levels
OsHAM4|SCL6-I	Os06g0105350	LOC_Os06g01620	drought tolerance	Rice microRNA171f/SCL6 module enhances drought tolerance by regulation of flavonoid biosynthesis genes.	 Our findings indicate that osa-miR171 plays a role in drought tolerance by regulating SCL6-I and SCL6-II transcript levels
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	growth	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	 All these results demonstrate that overexpression of OsNF-YB4 in the hybrid rice activates flowering early and improves photosynthesis resulting in better grain yield with shorter growth period
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	grain	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	grain	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	 All these results demonstrate that overexpression of OsNF-YB4 in the hybrid rice activates flowering early and improves photosynthesis resulting in better grain yield with shorter growth period
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	grain yield	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	grain yield	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	 All these results demonstrate that overexpression of OsNF-YB4 in the hybrid rice activates flowering early and improves photosynthesis resulting in better grain yield with shorter growth period
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	photosynthesis	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	photosynthesis	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	 All these results demonstrate that overexpression of OsNF-YB4 in the hybrid rice activates flowering early and improves photosynthesis resulting in better grain yield with shorter growth period
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	yield	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	yield	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	 All these results demonstrate that overexpression of OsNF-YB4 in the hybrid rice activates flowering early and improves photosynthesis resulting in better grain yield with shorter growth period
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	flowering	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	flowering	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	 In this study, flowering early was observed in the hybrid rice with overexpression of OsNF-YB4
OsHAP3C|OsNF-YB4	Os05g0573500	LOC_Os05g49780	flowering	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	 All these results demonstrate that overexpression of OsNF-YB4 in the hybrid rice activates flowering early and improves photosynthesis resulting in better grain yield with shorter growth period
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	vegetative	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	The OsHAP3E-overexpressing plants showed various abnormal morphologies both in their vegetative and reproductive phases
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	vegetative	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	The OsHAP3E-overexpressing plants were dwarf with erected leaves and similar to brassinosteroid mutants in the vegetative phase
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	vegetative	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	Altogether, our loss-of-function and gain-of-function analyses suggest that OsHAP3E plays important pleiotropic roles in vegetative and reproductive development or basic cellular processes in rice
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	vegetative	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	dwarf	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	The OsHAP3E-overexpressing plants were dwarf with erected leaves and similar to brassinosteroid mutants in the vegetative phase
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	meristem	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	These phenotypes indicate association of OsHAP3E with determination of floral meristem identity
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	meristem	OsLEC1/OsHAP3E participates in the determination of meristem identity in both vegetative and reproductive developments of rice	OsLEC1/OsHAP3E participates in the determination of meristem identity in both vegetative and reproductive developments of rice
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	erect	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	The OsHAP3E-overexpressing plants were dwarf with erected leaves and similar to brassinosteroid mutants in the vegetative phase
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	vegetative	OsLEC1/OsHAP3E participates in the determination of meristem identity in both vegetative and reproductive developments of rice	OsLEC1/OsHAP3E participates in the determination of meristem identity in both vegetative and reproductive developments of rice
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	floral meristem	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	These phenotypes indicate association of OsHAP3E with determination of floral meristem identity
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	reproductive	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	The OsHAP3E-overexpressing plants showed various abnormal morphologies both in their vegetative and reproductive phases
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	reproductive	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	Altogether, our loss-of-function and gain-of-function analyses suggest that OsHAP3E plays important pleiotropic roles in vegetative and reproductive development or basic cellular processes in rice
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	reproductive	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	brassinosteroid	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	The OsHAP3E-overexpressing plants were dwarf with erected leaves and similar to brassinosteroid mutants in the vegetative phase
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	floral	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	These phenotypes indicate association of OsHAP3E with determination of floral meristem identity
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	reproductive	OsLEC1/OsHAP3E participates in the determination of meristem identity in both vegetative and reproductive developments of rice	OsLEC1/OsHAP3E participates in the determination of meristem identity in both vegetative and reproductive developments of rice
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	development	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Oslec1 mutant seeds lost desiccation tolerance and triggered embryo greening at the early development stage
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	development	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Our findings suggested that OsLEC1 acts as not only a central regulator of seed maturation but also an inhibitor of embryo greening during rice seed development
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	development	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 This study would provide new understanding for the OsLEC1 regulatory mechanisms on photosynthesis in the monocot seed development
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	seed	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Transcriptome analysis demonstrated that Oslec1 mutation altered diverse hormonal pathways and stress response in seed maturation, and promoted a series of photosynthesis-related genes
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	seed	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Further, genome-wide identification of OsLEC1-binding sites demonstrated that OsLEC1 bound to genes involved in photosynthesis, photomorphogenesis, as well as abscisic acid (ABA) and gibberellin (GA) pathways, involved in seed maturation
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	seed	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Our findings suggested that OsLEC1 acts as not only a central regulator of seed maturation but also an inhibitor of embryo greening during rice seed development
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	seed	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 This study would provide new understanding for the OsLEC1 regulatory mechanisms on photosynthesis in the monocot seed development
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	photosynthesis	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 This study would provide new understanding for the OsLEC1 regulatory mechanisms on photosynthesis in the monocot seed development
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	tolerance	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Oslec1 mutant seeds lost desiccation tolerance and triggered embryo greening at the early development stage
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	gibberellin	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Further, genome-wide identification of OsLEC1-binding sites demonstrated that OsLEC1 bound to genes involved in photosynthesis, photomorphogenesis, as well as abscisic acid (ABA) and gibberellin (GA) pathways, involved in seed maturation
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	stress	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Transcriptome analysis demonstrated that Oslec1 mutation altered diverse hormonal pathways and stress response in seed maturation, and promoted a series of photosynthesis-related genes
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	abscisic acid	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Further, genome-wide identification of OsLEC1-binding sites demonstrated that OsLEC1 bound to genes involved in photosynthesis, photomorphogenesis, as well as abscisic acid (ABA) and gibberellin (GA) pathways, involved in seed maturation
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	Gibberellin	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Further, genome-wide identification of OsLEC1-binding sites demonstrated that OsLEC1 bound to genes involved in photosynthesis, photomorphogenesis, as well as abscisic acid (ABA) and gibberellin (GA) pathways, involved in seed maturation
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	seed development	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Our findings suggested that OsLEC1 acts as not only a central regulator of seed maturation but also an inhibitor of embryo greening during rice seed development
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	seed development	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 This study would provide new understanding for the OsLEC1 regulatory mechanisms on photosynthesis in the monocot seed development
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	stress response	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Transcriptome analysis demonstrated that Oslec1 mutation altered diverse hormonal pathways and stress response in seed maturation, and promoted a series of photosynthesis-related genes
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	embryo	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Oslec1 mutant seeds lost desiccation tolerance and triggered embryo greening at the early development stage
OsHAP3E|LEC1|OsLEC1	Os02g0725700	LOC_Os02g49370	embryo	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	 Our findings suggested that OsLEC1 acts as not only a central regulator of seed maturation but also an inhibitor of embryo greening during rice seed development
OsHAPL1	Os05g0494100	LOC_Os05g41450	transcription factor	The OsHAPL1-DTH8-Hd1 complex functions as the transcription regulator to repress heading date in rice.	OsHAPL1 can physically interact with Days To Heading on chromosome 8 (DTH8), which physically interacts with Heading date 1 (Hd1) both in vitro and in vivo OsHAPL1 forms a complex with DTH8 and Hd1 in Escherichia coli OsHAPL1, DTH8, and Hd1 physically interact with the HAP complex, and also with general transcription factors in yeast (Saccharomyces cerevisiae)
OsHAPL1	Os05g0494100	LOC_Os05g41450	transcription factor	The OsHAPL1-DTH8-Hd1 complex functions as the transcription regulator to repress heading date in rice.	We propose that OsHAPL1 functions as a transcriptional regulator and, together with DTH8, Hd1, the HAP complex, and general transcription factors, regulates the expression of target genes and then affects heading date by influencing the expression of Hd3a and RFT1 through Ehd1
OsHAPL1	Os05g0494100	LOC_Os05g41450	heading date	The OsHAPL1-DTH8-Hd1 complex functions as the transcription regulator to repress heading date in rice.	OsHAPL1 can physically interact with Days To Heading on chromosome 8 (DTH8), which physically interacts with Heading date 1 (Hd1) both in vitro and in vivo OsHAPL1 forms a complex with DTH8 and Hd1 in Escherichia coli OsHAPL1, DTH8, and Hd1 physically interact with the HAP complex, and also with general transcription factors in yeast (Saccharomyces cerevisiae)
OsHAPL1	Os05g0494100	LOC_Os05g41450	heading date	The OsHAPL1-DTH8-Hd1 complex functions as the transcription regulator to repress heading date in rice.	Further studies showed that OsHAPL1 represses the expression of the florigen genes and FLOWERING LOCUS T 1 (RFT1) and Hd3a through Early heading date 1 (Ehd1)
OsHAPL1	Os05g0494100	LOC_Os05g41450	heading date	The OsHAPL1-DTH8-Hd1 complex functions as the transcription regulator to repress heading date in rice.	We propose that OsHAPL1 functions as a transcriptional regulator and, together with DTH8, Hd1, the HAP complex, and general transcription factors, regulates the expression of target genes and then affects heading date by influencing the expression of Hd3a and RFT1 through Ehd1
OsHAPL1	Os05g0494100	LOC_Os05g41450	transcriptional regulator	The OsHAPL1-DTH8-Hd1 complex functions as the transcription regulator to repress heading date in rice.	We propose that OsHAPL1 functions as a transcriptional regulator and, together with DTH8, Hd1, the HAP complex, and general transcription factors, regulates the expression of target genes and then affects heading date by influencing the expression of Hd3a and RFT1 through Ehd1
OsHARP	Os02g0256200	LOC_Os02g15700	leaf	and alanine-rich protein showing interaction with calreticulin in rice.	Rice plants transformed with the OsHARP promoter-GUS construct showed GUS staining in the basal parts of leaf sheaths, and although GUS activity increased when treated with GA(3), it was not as high an increase as when mRNA was analyzed
OsHARP	Os02g0256200	LOC_Os02g15700	leaf	and alanine-rich protein showing interaction with calreticulin in rice.	To elucidate the role of OsHARP in leaf sheath elongation, antisense OsHARP transgenic rice lines were constructed
OsHARP	Os02g0256200	LOC_Os02g15700	leaf	and alanine-rich protein showing interaction with calreticulin in rice.	To examine whether OsHARP expression would affect other proteins, basal leaf sheaths from antisense OsHARP transgenic rice plants were analyzed using proteomic techniques
OsHARP	Os02g0256200	LOC_Os02g15700	seedlings	and alanine-rich protein showing interaction with calreticulin in rice.	The mRNA expression level of OsHARP was up-regulated in rice seedlings treated with gibberellin (GA), but not ABA and showed a similar pattern as OsCRT mRNA
OsHARP	Os02g0256200	LOC_Os02g15700	sheath	and alanine-rich protein showing interaction with calreticulin in rice.	To elucidate the role of OsHARP in leaf sheath elongation, antisense OsHARP transgenic rice lines were constructed
OsHARP	Os02g0256200	LOC_Os02g15700	gibberellin	and alanine-rich protein showing interaction with calreticulin in rice.	The mRNA expression level of OsHARP was up-regulated in rice seedlings treated with gibberellin (GA), but not ABA and showed a similar pattern as OsCRT mRNA
OsHARP	Os02g0256200	LOC_Os02g15700	ABA	and alanine-rich protein showing interaction with calreticulin in rice.	The mRNA expression level of OsHARP was up-regulated in rice seedlings treated with gibberellin (GA), but not ABA and showed a similar pattern as OsCRT mRNA
OsHARP	Os02g0256200	LOC_Os02g15700	R protein	and alanine-rich protein showing interaction with calreticulin in rice.	To examine whether OsHARP expression would affect other proteins, basal leaf sheaths from antisense OsHARP transgenic rice plants were analyzed using proteomic techniques
OsHARP	Os02g0256200	LOC_Os02g15700	R protein	and alanine-rich protein showing interaction with calreticulin in rice.	In antisense transgenic-rice OsHARP plants, OsCRT was down-regulated and the levels of 20 other proteins were changed compared to the pattern of the vector control
OsHARP	Os02g0256200	LOC_Os02g15700	ABA	and alanine-rich protein showing interaction with calreticulin in rice.	The mRNA expression level of OsHARP was up-regulated in rice seedlings treated with gibberellin (GA), but not ABA and showed a similar pattern as OsCRT mRNA
OsHARP	Os02g0256200	LOC_Os02g15700	Gibberellin	and alanine-rich protein showing interaction with calreticulin in rice.	The mRNA expression level of OsHARP was up-regulated in rice seedlings treated with gibberellin (GA), but not ABA and showed a similar pattern as OsCRT mRNA
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	shoot apical meristem	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	xylem	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	meristem	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	vascular bundle	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	leaf	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	shoot	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	spikelet	LATERAL FLORET 1 induced the three-florets spikelet in rice.	Ectopic expression of both LF1 and the meristem maintenance gene OSH1 was detected in the axil of the sterile lemma primordia of the lf1 spikelet
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	floral	LATERAL FLORET 1 induced the three-florets spikelet in rice.	In the lf1 spikelet, lateral floral meristems were promoted unexpectedly and could generally blossom into relatively normal florets
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	meristem	LATERAL FLORET 1 induced the three-florets spikelet in rice.	Ectopic expression of both LF1 and the meristem maintenance gene OSH1 was detected in the axil of the sterile lemma primordia of the lf1 spikelet
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	floral meristem	LATERAL FLORET 1 induced the three-florets spikelet in rice.	In the lf1 spikelet, lateral floral meristems were promoted unexpectedly and could generally blossom into relatively normal florets
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	lemma	LATERAL FLORET 1 induced the three-florets spikelet in rice.	Ectopic expression of both LF1 and the meristem maintenance gene OSH1 was detected in the axil of the sterile lemma primordia of the lf1 spikelet
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	lemma	LATERAL FLORET 1 induced the three-florets spikelet in rice.	Collectively, these results indicate that the mutation of LF1 induces ectopic expression of OSH1, which results in the initiation of lateral meristems to generate lateral florets in the axil of the sterile lemma
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	sterile	LATERAL FLORET 1 induced the three-florets spikelet in rice.	Ectopic expression of both LF1 and the meristem maintenance gene OSH1 was detected in the axil of the sterile lemma primordia of the lf1 spikelet
OSHB1|LF1	Os03g0109400	LOC_Os03g01890	sterile	LATERAL FLORET 1 induced the three-florets spikelet in rice.	Collectively, these results indicate that the mutation of LF1 induces ectopic expression of OSH1, which results in the initiation of lateral meristems to generate lateral florets in the axil of the sterile lemma
OsHB22	Os03g0124000	LOC_Os03g03260	drought response	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	meristem	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	pOsHox33::GUS fusion expression and RT-PCR revealed that OsHox33 is highly expressed in young organs, especially in young meristems such as shoot apical meristems, intercalary meristems, and young callus
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	senescence	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	In this study, we analyzed a HD-Zip III member, OsHox33, and demonstrated that it plays an important role in age-dependent leaf senescence in rice
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	senescence	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	Transgenic plants harboring either RNAi construct displayed similar phenotypes of precocious leaf senescence symptoms, suggesting that knockdown of OsHox33 accelerates leaf senescence in rice
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	senescence	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	Finally, real-time PCR studies showed that OsHox33 can regulate the expression of GS1 and GS2, two senescence-associated genes
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	senescence	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	shoot apical meristem	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	pOsHox33::GUS fusion expression and RT-PCR revealed that OsHox33 is highly expressed in young organs, especially in young meristems such as shoot apical meristems, intercalary meristems, and young callus
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	shoot	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	pOsHox33::GUS fusion expression and RT-PCR revealed that OsHox33 is highly expressed in young organs, especially in young meristems such as shoot apical meristems, intercalary meristems, and young callus
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	leaf	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	In this study, we analyzed a HD-Zip III member, OsHox33, and demonstrated that it plays an important role in age-dependent leaf senescence in rice
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	leaf	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	Transgenic plants harboring either RNAi construct displayed similar phenotypes of precocious leaf senescence symptoms, suggesting that knockdown of OsHox33 accelerates leaf senescence in rice
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	leaf	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	shoot	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Plants ectopically expressing microRNA166-resistant versions of the OSHB3 gene exhibited severe defects, including the ectopic production of leaf margins, shoots, and radialized leaves
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	chloroplast	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	To further investigate OsHox33 function, we analyzed chloroplast ultrastructure in different-aged leaves of RNAi plants, and found that OsHox33 knockdown accelerated chloroplast degradation, which is consistent with RNAi phenotypes
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	intercalary meristem	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice	pOsHox33::GUS fusion expression and RT-PCR revealed that OsHox33 is highly expressed in young organs, especially in young meristems such as shoot apical meristems, intercalary meristems, and young callus
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	leaf	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Plants ectopically expressing microRNA166-resistant versions of the OSHB3 gene exhibited severe defects, including the ectopic production of leaf margins, shoots, and radialized leaves
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	leaf	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Furthermore, this ectopic expression of OSHB3 was correlated with leaf initiation defects
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	auxin	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	The treatment of seedlings with auxin quickly induced ectopic OSHB3 expression in the entire region of the SAM, but not in other tissues
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	resistant	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Plants ectopically expressing microRNA166-resistant versions of the OSHB3 gene exhibited severe defects, including the ectopic production of leaf margins, shoots, and radialized leaves
OSHB3|OsHox33	Os12g0612700	LOC_Os12g41860	seedling	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	The treatment of seedlings with auxin quickly induced ectopic OSHB3 expression in the entire region of the SAM, but not in other tissues
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	transcription factor	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	meristem	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	meristem	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	vascular bundle	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	xylem	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	shoot	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	leaf	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	shoot apical meristem	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice	Four genes, OSHB1 to OSHB4, were expressed in a localized domain of the shoot apical meristem (SAM), the adaxial cells of leaf primordia, the leaf margins, and the xylem tissue of vascular bundles
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	leaf	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	leaf	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	OsHox32 exhibited constitutive expression in different organs, with higher mRNA levels in the stem, leaf sheath, shoot apical meristems and young roots, suggesting a role in plant-type and leaf development
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	leaf	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	mRNA level of six rice YABBY genes is up-regulated or down-regulated by OsHox32, suggesting that OsHox32 may regulate the architecture of plant type and leaf development by controlling the expression of YABBY genes in rice
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	leaf development	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	leaf development	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	OsHox32 exhibited constitutive expression in different organs, with higher mRNA levels in the stem, leaf sheath, shoot apical meristems and young roots, suggesting a role in plant-type and leaf development
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	leaf development	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	mRNA level of six rice YABBY genes is up-regulated or down-regulated by OsHox32, suggesting that OsHox32 may regulate the architecture of plant type and leaf development by controlling the expression of YABBY genes in rice
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	shoot	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	OsHox32 exhibited constitutive expression in different organs, with higher mRNA levels in the stem, leaf sheath, shoot apical meristems and young roots, suggesting a role in plant-type and leaf development
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	development	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	development	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	OsHox32 exhibited constitutive expression in different organs, with higher mRNA levels in the stem, leaf sheath, shoot apical meristems and young roots, suggesting a role in plant-type and leaf development
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	development	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	mRNA level of six rice YABBY genes is up-regulated or down-regulated by OsHox32, suggesting that OsHox32 may regulate the architecture of plant type and leaf development by controlling the expression of YABBY genes in rice
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	architecture	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	architecture	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	mRNA level of six rice YABBY genes is up-regulated or down-regulated by OsHox32, suggesting that OsHox32 may regulate the architecture of plant type and leaf development by controlling the expression of YABBY genes in rice
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	shoot apical meristem	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	OsHox32 exhibited constitutive expression in different organs, with higher mRNA levels in the stem, leaf sheath, shoot apical meristems and young roots, suggesting a role in plant-type and leaf development
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	leaf	Knock-down of rice microRNA166 confers drought resistance by causing leaf rolling and altering stem xylem development.	Molecular analyses revealed OsHB4, a member of HD-Zip III gene family, as a major target of miR166 and overexpression of miR166-resistant OsHB4 resulted in rice plants resembling the STTM166 lines, including leaf rolling and higher drought resistance
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	resistance	Knock-down of rice microRNA166 confers drought resistance by causing leaf rolling and altering stem xylem development.	Molecular analyses revealed OsHB4, a member of HD-Zip III gene family, as a major target of miR166 and overexpression of miR166-resistant OsHB4 resulted in rice plants resembling the STTM166 lines, including leaf rolling and higher drought resistance
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	drought	Knock-down of rice microRNA166 confers drought resistance by causing leaf rolling and altering stem xylem development.	Molecular analyses revealed OsHB4, a member of HD-Zip III gene family, as a major target of miR166 and overexpression of miR166-resistant OsHB4 resulted in rice plants resembling the STTM166 lines, including leaf rolling and higher drought resistance
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	drought resistance	Knock-down of rice microRNA166 confers drought resistance by causing leaf rolling and altering stem xylem development.	Molecular analyses revealed OsHB4, a member of HD-Zip III gene family, as a major target of miR166 and overexpression of miR166-resistant OsHB4 resulted in rice plants resembling the STTM166 lines, including leaf rolling and higher drought resistance
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	leaf rolling	Knock-down of rice microRNA166 confers drought resistance by causing leaf rolling and altering stem xylem development.	Molecular analyses revealed OsHB4, a member of HD-Zip III gene family, as a major target of miR166 and overexpression of miR166-resistant OsHB4 resulted in rice plants resembling the STTM166 lines, including leaf rolling and higher drought resistance
OSHB4|OsHox32	Os03g0640800	LOC_Os03g43930	cell wall	The OsmiRNA166b-OsHox32 pair regulates mechanical strength of rice plants by modulating cell wall biosynthesis	Overexpression of miR166b (OE166b) in rice plants or knocking down of OsHox32 by RNA interference (RNAiHox32) led to increased thickness of cell walls and enhanced mechanical strength of culms
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	drought	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	As compared to the WT tobacco plants, the transgenic plants ectopically expressing OsHBP1b showed better survival and favourable osmotic parameters (such as germination and survival rate, membrane stability, K(+)/Na(+) ratio, lipid peroxidation, electrolyte leakage and proline contents) under salinity and drought stress
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	salinity	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	qRT-PCR based expression studies for OsHBP1b in seedlings of contrasting genotypes of rice showed its differential regulation in response to salinity stress
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	salinity	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	As compared to the WT tobacco plants, the transgenic plants ectopically expressing OsHBP1b showed better survival and favourable osmotic parameters (such as germination and survival rate, membrane stability, K(+)/Na(+) ratio, lipid peroxidation, electrolyte leakage and proline contents) under salinity and drought stress
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	tolerance	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	Taken together, our findings suggest that OsHBP1b contributes to abiotic stress tolerance through multiple physiological pathways and thus, may serve as a useful 'candidate gene' for improving multiple stress tolerance in crop plants
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	stress	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	qRT-PCR based expression studies for OsHBP1b in seedlings of contrasting genotypes of rice showed its differential regulation in response to salinity stress
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	stress	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	As compared to the WT tobacco plants, the transgenic plants ectopically expressing OsHBP1b showed better survival and favourable osmotic parameters (such as germination and survival rate, membrane stability, K(+)/Na(+) ratio, lipid peroxidation, electrolyte leakage and proline contents) under salinity and drought stress
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	stress	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	Taken together, our findings suggest that OsHBP1b contributes to abiotic stress tolerance through multiple physiological pathways and thus, may serve as a useful 'candidate gene' for improving multiple stress tolerance in crop plants
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	seedlings	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	qRT-PCR based expression studies for OsHBP1b in seedlings of contrasting genotypes of rice showed its differential regulation in response to salinity stress
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	grain	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 In the present study, we over-express the full-length gene encoding OsHBP1b in the homologous system (rice) to assess its contribution towards multiple stress tolerance and grain yield
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	drought	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 Recently, we have reported the characterization of OsHBP1b in relation to salinity and drought tolerance in a model system tobacco
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	salinity	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 Recently, we have reported the characterization of OsHBP1b in relation to salinity and drought tolerance in a model system tobacco
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	salinity	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	We provide evidence to show that transgenic rice plants over-expressing OsHBP1b exhibit better survival and favourable osmotic parameters under salinity stress than the wild type counterparts
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	tolerance	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 Recently, we have reported the characterization of OsHBP1b in relation to salinity and drought tolerance in a model system tobacco
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	tolerance	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 In the present study, we over-express the full-length gene encoding OsHBP1b in the homologous system (rice) to assess its contribution towards multiple stress tolerance and grain yield
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	grain yield	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 In the present study, we over-express the full-length gene encoding OsHBP1b in the homologous system (rice) to assess its contribution towards multiple stress tolerance and grain yield
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	yield	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 In the present study, we over-express the full-length gene encoding OsHBP1b in the homologous system (rice) to assess its contribution towards multiple stress tolerance and grain yield
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	drought tolerance	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 Recently, we have reported the characterization of OsHBP1b in relation to salinity and drought tolerance in a model system tobacco
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	stress	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 In the present study, we over-express the full-length gene encoding OsHBP1b in the homologous system (rice) to assess its contribution towards multiple stress tolerance and grain yield
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	stress	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	We provide evidence to show that transgenic rice plants over-expressing OsHBP1b exhibit better survival and favourable osmotic parameters under salinity stress than the wild type counterparts
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	salinity stress	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	We provide evidence to show that transgenic rice plants over-expressing OsHBP1b exhibit better survival and favourable osmotic parameters under salinity stress than the wild type counterparts
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	stress tolerance	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	 In the present study, we over-express the full-length gene encoding OsHBP1b in the homologous system (rice) to assess its contribution towards multiple stress tolerance and grain yield
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	Kinase	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	Kinase	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	 Importantly, we showed that the nucleus-localized casein kinase II (CK2) complex interacts with and phosphorylates OsTGA5 on Ser-32, which reduces the affinity of OsTGA5 for the JIOsPR10 promoter, thereby alleviating the repression of JIOsPR10 transcription and increasing rice resistance
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	kinase	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	kinase	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	 Importantly, we showed that the nucleus-localized casein kinase II (CK2) complex interacts with and phosphorylates OsTGA5 on Ser-32, which reduces the affinity of OsTGA5 for the JIOsPR10 promoter, thereby alleviating the repression of JIOsPR10 transcription and increasing rice resistance
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	resistance	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	 In this study, we characterized the role of OsTGA5 as a negative regulator of rice resistance against blast fungus by transcriptionally repressing the expression of various defense-related genes
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	resistance	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	 Importantly, we showed that the nucleus-localized casein kinase II (CK2) complex interacts with and phosphorylates OsTGA5 on Ser-32, which reduces the affinity of OsTGA5 for the JIOsPR10 promoter, thereby alleviating the repression of JIOsPR10 transcription and increasing rice resistance
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	salicylic acid	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	 Moreover, OsTGA5 repressed PTI responses and the accumulation of endogenous salicylic acid
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	blast	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	 In this study, we characterized the role of OsTGA5 as a negative regulator of rice resistance against blast fungus by transcriptionally repressing the expression of various defense-related genes
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	blast	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	 Furthermore, the in vivo phosphorylation of OsTGA5 Ser-32 was enhanced by blast fungus infection
OsHBP1b|OsTGA5	Os01g0279900	LOC_Os01g17260	blast	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	 Taken together, our results provide a mechanism for the role of OsTGA5 in negatively regulating the transcription of defense-related genes in rice and the repressive switch imposed by nuclear CK2-mediated phosphorylation during blast fungus invasion
OsHCAR	Os04g0320100	LOC_Os04g25400	leaf	Rice 7-Hydroxymethyl Chlorophyll a Reductase Is Involved in the Promotion of Chlorophyll Degradation and Modulates Cell Death Signaling.	Here, we show that an<U+00A0>oshcar knockout mutant exhibits persistent green leaves during both dark-induced and natural senescence, and accumulates 7-HMC a and pheophorbide a (Pheo a) in green leaf blades
OsHCF222	Os03g0414400	LOC_Os03g30092	seedling	The OsABCI7 transporter interacts with OsHCF222 to stabilize the thylakoid membrane in rice	Unlike cnl1, the CRISPR/Cas9-mediated OsHCF222 knockout lines showed chlorotic leaves but were seedling lethal
OsHCF222	Os03g0414400	LOC_Os03g30092	transporter	The OsABCI7 transporter interacts with OsHCF222 to stabilize the thylakoid membrane in rice	The OsABCI7 transporter interacts with OsHCF222 to stabilize the thylakoid membrane in rice
OsHCI1	Os10g0445400	LOC_Os10g30850	cold stress	The rice RING finger E3 ligase, OsHCI1, drives nuclear export of multiple substrate proteins and its heterogeneous overexpression enhances acquired thermotolerance	This study found that one rice gene encoding the RING finger protein was specifically induced by heat and cold stress treatments but not by salinity or dehydration and named it OsHCI1 (Oryza sativa heat and cold induced 1)
OsHCI1	Os10g0445400	LOC_Os10g30850	transcription factor	The rice RING finger E3 ligase, OsHCI1, drives nuclear export of multiple substrate proteins and its heterogeneous overexpression enhances acquired thermotolerance	OsHCI1 physically interacted with nuclear substrate proteins including a basic helix-loop-helix transcription factor
OsHCI1	Os10g0445400	LOC_Os10g30850	salinity	The rice RING finger E3 ligase, OsHCI1, drives nuclear export of multiple substrate proteins and its heterogeneous overexpression enhances acquired thermotolerance	This study found that one rice gene encoding the RING finger protein was specifically induced by heat and cold stress treatments but not by salinity or dehydration and named it OsHCI1 (Oryza sativa heat and cold induced 1)
OsHCI1	Os10g0445400	LOC_Os10g30850	temperature	The rice RING finger E3 ligase, OsHCI1, drives nuclear export of multiple substrate proteins and its heterogeneous overexpression enhances acquired thermotolerance	In contrast, OsHCI1 may have accumulated in the nucleus under high temperatures
OsHDA701	Os01g0586400	LOC_Os01g40400	resistance	A secreted fungal effector suppresses rice immunity through host histone hypoacetylation.	 Here, we identified a secreted protein, UvSec117, from the rice false smut fungus, Ustilaginoidea virens, as a key effector that can target the rice histone deacetylase OsHDA701 and negatively regulates rice broad-spectrum resistance against rice pathogens
OsHDA701	Os01g0586400	LOC_Os01g40400	defense	A secreted fungal effector suppresses rice immunity through host histone hypoacetylation.	 UvSec117 disrupts host immunity by recruiting OsHDA701 to the nucleus and enhancing OsHDA701-modulated deacetylation, thereby reducing histone H3K9 acetylation levels in rice plants and interfering with defense gene activation
OsHDA701	Os01g0586400	LOC_Os01g40400	immunity	A secreted fungal effector suppresses rice immunity through host histone hypoacetylation.	 UvSec117 disrupts host immunity by recruiting OsHDA701 to the nucleus and enhancing OsHDA701-modulated deacetylation, thereby reducing histone H3K9 acetylation levels in rice plants and interfering with defense gene activation
OsHDA701	Os01g0586400	LOC_Os01g40400	nucleus	A secreted fungal effector suppresses rice immunity through host histone hypoacetylation.	 UvSec117 disrupts host immunity by recruiting OsHDA701 to the nucleus and enhancing OsHDA701-modulated deacetylation, thereby reducing histone H3K9 acetylation levels in rice plants and interfering with defense gene activation
OsHDA706	Os06g0571100	LOC_Os06g37420	stress	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 In this study, we revealed that the histone deacetylase OsHDA706 epigenetically regulates the expression of salt stress response genes in rice (Oryza sativa L
OsHDA706	Os06g0571100	LOC_Os06g37420	stress	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 OsHDA706 localizes to the nucleus and cytoplasm and OsHDA706 expression is significantly induced under salt stress
OsHDA706	Os06g0571100	LOC_Os06g37420	stress	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 Moreover, oshda706 mutants showed a higher sensitivity to salt stress than the wild-type
OsHDA706	Os06g0571100	LOC_Os06g37420	stress	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 We found that the expression of OsPP2C49 is induced in the oshda706 mutant under salt stress
OsHDA706	Os06g0571100	LOC_Os06g37420	salt	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.
OsHDA706	Os06g0571100	LOC_Os06g37420	salt	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 In this study, we revealed that the histone deacetylase OsHDA706 epigenetically regulates the expression of salt stress response genes in rice (Oryza sativa L
OsHDA706	Os06g0571100	LOC_Os06g37420	salt	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 OsHDA706 localizes to the nucleus and cytoplasm and OsHDA706 expression is significantly induced under salt stress
OsHDA706	Os06g0571100	LOC_Os06g37420	salt	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 Moreover, oshda706 mutants showed a higher sensitivity to salt stress than the wild-type
OsHDA706	Os06g0571100	LOC_Os06g37420	salt	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 We found that the expression of OsPP2C49 is induced in the oshda706 mutant under salt stress
OsHDA706	Os06g0571100	LOC_Os06g37420	tolerance	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.
OsHDA706	Os06g0571100	LOC_Os06g37420	nucleus	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 OsHDA706 localizes to the nucleus and cytoplasm and OsHDA706 expression is significantly induced under salt stress
OsHDA706	Os06g0571100	LOC_Os06g37420	salt tolerance	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.
OsHDA706	Os06g0571100	LOC_Os06g37420	salt stress	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 In this study, we revealed that the histone deacetylase OsHDA706 epigenetically regulates the expression of salt stress response genes in rice (Oryza sativa L
OsHDA706	Os06g0571100	LOC_Os06g37420	salt stress	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 OsHDA706 localizes to the nucleus and cytoplasm and OsHDA706 expression is significantly induced under salt stress
OsHDA706	Os06g0571100	LOC_Os06g37420	salt stress	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 Moreover, oshda706 mutants showed a higher sensitivity to salt stress than the wild-type
OsHDA706	Os06g0571100	LOC_Os06g37420	salt stress	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 We found that the expression of OsPP2C49 is induced in the oshda706 mutant under salt stress
OsHDA706	Os06g0571100	LOC_Os06g37420	cytoplasm	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 OsHDA706 localizes to the nucleus and cytoplasm and OsHDA706 expression is significantly induced under salt stress
OsHDA706	Os06g0571100	LOC_Os06g37420	stress response	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	 In this study, we revealed that the histone deacetylase OsHDA706 epigenetically regulates the expression of salt stress response genes in rice (Oryza sativa L
OsHDAC1	Os06g0583400	LOC_Os06g38470	growth	Structure and expression of the rice class-I type histone deacetylase genesOsHDAC1-3:OsHDAC1overexpression in transgenic plants leads to increased growth rate and altered architecture	The overexpression leads to a range of novel phenotypes, involving increased growth rate and altered plant architecture, suggesting that OsHDAC1 functions in the genome-wide programming of gene expression
OsHDAC1	Os06g0583400	LOC_Os06g38470	growth	Structure and expression of the rice class-I type histone deacetylase genesOsHDAC1-3:OsHDAC1overexpression in transgenic plants leads to increased growth rate and altered architecture	Structure and expression of the rice class-I type histone deacetylase genesOsHDAC1-3:OsHDAC1overexpression in transgenic plants leads to increased growth rate and altered architecture
OsHDAC1	Os06g0583400	LOC_Os06g38470	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	We have previously isolated a rice gene encoding a histone deacetylase, OsHDAC1, and observed that its transgenic overexpression increases seedling root growth
OsHDAC1	Os06g0583400	LOC_Os06g38470	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	To identify the transcriptional repression events that occur as a result of OsHDAC1 overexpression (OsHDAC1(OE)), a global profiling of root-expressed genes was performed on OsHDAC1(OE) or HDAC inhibitor-treated non-transgenic (NT) roots, in comparison with untreated NT roots
OsHDAC1	Os06g0583400	LOC_Os06g38470	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	We selected 39 genes that are induced and repressed in HDAC inhibitor-treated NT and OsHDAC1(OE) roots, compared with NT roots, respectively
OsHDAC1	Os06g0583400	LOC_Os06g38470	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The root phenotype of OsNAC6 knock-out seedlings was observed to be similar to that of the OsHDAC1(OE) seedlings
OsHDAC1	Os06g0583400	LOC_Os06g38470	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	Conversely, the root phenotype of the OsNAC6 overexpressors was similar to that of the OsHDAC1 knock-out seedlings
OsHDAC1	Os06g0583400	LOC_Os06g38470	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	These observations indicate that OsHDAC1 negatively regulates the OsNAC6 gene that primarily mediates the alteration in the root growth of the OsHDAC1(OE) seedlings
OsHDAC1	Os06g0583400	LOC_Os06g38470	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice
OsHDAC1	Os06g0583400	LOC_Os06g38470	seedling	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	We have previously isolated a rice gene encoding a histone deacetylase, OsHDAC1, and observed that its transgenic overexpression increases seedling root growth
OsHDAC1	Os06g0583400	LOC_Os06g38470	seedling	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The root phenotype of OsNAC6 knock-out seedlings was observed to be similar to that of the OsHDAC1(OE) seedlings
OsHDAC1	Os06g0583400	LOC_Os06g38470	seedling	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	Conversely, the root phenotype of the OsNAC6 overexpressors was similar to that of the OsHDAC1 knock-out seedlings
OsHDAC1	Os06g0583400	LOC_Os06g38470	seedling	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	These observations indicate that OsHDAC1 negatively regulates the OsNAC6 gene that primarily mediates the alteration in the root growth of the OsHDAC1(OE) seedlings
OsHDAC1	Os06g0583400	LOC_Os06g38470	seedling	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice
OsHDAC1	Os06g0583400	LOC_Os06g38470	architecture	Structure and expression of the rice class-I type histone deacetylase genesOsHDAC1-3:OsHDAC1overexpression in transgenic plants leads to increased growth rate and altered architecture	The overexpression leads to a range of novel phenotypes, involving increased growth rate and altered plant architecture, suggesting that OsHDAC1 functions in the genome-wide programming of gene expression
OsHDAC1	Os06g0583400	LOC_Os06g38470	architecture	Structure and expression of the rice class-I type histone deacetylase genesOsHDAC1-3:OsHDAC1overexpression in transgenic plants leads to increased growth rate and altered architecture	Structure and expression of the rice class-I type histone deacetylase genesOsHDAC1-3:OsHDAC1overexpression in transgenic plants leads to increased growth rate and altered architecture
OsHDAC1	Os06g0583400	LOC_Os06g38470	root	Structure and expression of the rice class-I type histone deacetylase genesOsHDAC1-3:OsHDAC1overexpression in transgenic plants leads to increased growth rate and altered architecture	OsHDAC1 was expressed at similar levels in the leaves, roots, and callus cells, whereas OsHDAC2 and 3 were expressed in the roots and callus cells, but not in the leaves, exhibiting distinct tissue specificity
OsHDAC1	Os06g0583400	LOC_Os06g38470	growth	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	We have previously isolated a rice gene encoding a histone deacetylase, OsHDAC1, and observed that its transgenic overexpression increases seedling root growth
OsHDAC1	Os06g0583400	LOC_Os06g38470	growth	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	These observations indicate that OsHDAC1 negatively regulates the OsNAC6 gene that primarily mediates the alteration in the root growth of the OsHDAC1(OE) seedlings
OsHDAC1	Os06g0583400	LOC_Os06g38470	growth	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice
OsHDAC1	Os06g0583400	LOC_Os06g38470	root	The Histone Deacetylase 1/ GSK3/SHAGGY-Like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls Lateral Root Formation in Rice.	 Rice OsHDAC1 RNAi plants produced fewer lateral roots than wild-type plants, whereas plants overexpressing OsHDAC1 exhibited increased lateral root proliferation by promoting LR primordia formation
OsHDAC1	Os06g0583400	LOC_Os06g38470	breeding	The Histone Deacetylase 1/ GSK3/SHAGGY-Like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls Lateral Root Formation in Rice.	 Our findings suggest that OsHDAC1 is a breeding target in rice that can improve resource capture
OsHDAC1	Os06g0583400	LOC_Os06g38470	lateral root	The Histone Deacetylase 1/ GSK3/SHAGGY-Like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls Lateral Root Formation in Rice.	 Rice OsHDAC1 RNAi plants produced fewer lateral roots than wild-type plants, whereas plants overexpressing OsHDAC1 exhibited increased lateral root proliferation by promoting LR primordia formation
OsHDR|OsHMBPP|OsIspH1	Os03g0731900	LOC_Os03g52170	pigment biosynthesis	Differential Regulation of an OsIspH1, the Functional 4-Hydroxy-3-Methylbut-2-Enyl Diphosphate Reductase, for Photosynthetic Pigment Biosynthesis in Rice Leaves and Seeds	Differential Regulation of an OsIspH1, the Functional 4-Hydroxy-3-Methylbut-2-Enyl Diphosphate Reductase, for Photosynthetic Pigment Biosynthesis in Rice Leaves and Seeds
OsHDR|OsHMBPP|OsIspH1	Os03g0731900	LOC_Os03g52170	terpenoid biosynthesis	Differential Regulation of an OsIspH1, the Functional 4-Hydroxy-3-Methylbut-2-Enyl Diphosphate Reductase, for Photosynthetic Pigment Biosynthesis in Rice Leaves and Seeds	It confirmed the crucial role of OsIspH1 in plastidic terpenoid biosynthesis, revealing organ-specific differential regulation of OsIspH1 in rice plants.
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	flowering time	Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice	These data demonstrate that nonadditive gene expression was involved in flowering time control in the hybrid rice and that OsHDT1 level was important for nonadditive or differential expression of many genes including the flowering time genes, suggesting that OsHDT1 may be involved in epigenetic control of parental genome interaction for differential gene expression
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	defense	HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice	By contrast, silencing of HDT701 in transgenic rice causes elevated levels of histone H4 acetylation and elevated transcription of pattern recognition receptor (PRR) and defense-related genes, increased generation of reactive oxygen species after pathogen-associated molecular pattern elicitor treatment, as well as enhanced resistance to both M
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	defense	HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice	We also found that HDT701 can bind to defense-related genes to regulate their expression
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	defense	HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice	Taken together, these results demonstrate that HDT701 negatively regulates innate immunity by modulating the levels of histone H4 acetylation of PRR and defense-related genes in rice
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	defense	HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice	HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	growth	Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice	Increased OsHDT1 expression did not affect plant growth in the parent but led to early flowering in the hybrid
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	flower	Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice	Increased OsHDT1 expression did not affect plant growth in the parent but led to early flowering in the hybrid
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	flower	Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice	Over-expression of OsHDT1 repressed the nonadditive expression of the key flowering repressors in the hybrid (i
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	flower	Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice	These data demonstrate that nonadditive gene expression was involved in flowering time control in the hybrid rice and that OsHDT1 level was important for nonadditive or differential expression of many genes including the flowering time genes, suggesting that OsHDT1 may be involved in epigenetic control of parental genome interaction for differential gene expression
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	magnaporthe oryzae	HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice	Transcription of HDT701 is increased in the compatible reaction and decreased in the incompatible reaction after infection by the fungal pathogen Magnaporthe oryzae
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	seed	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Overexpression of HDT701 in rice decreases ABA, salt and osmotic stress resistance during seed germination
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	seed	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Delayed seed germination of HDT701 overexpression lines is associated with decreased histone H4 acetylation and down-regulated expression of GA biosynthetic genes
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	seed	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Taken together, our findings suggested that HDT701 may play an important role in regulating seed germination in response to abiotic stresses in rice
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	seedling	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Moreover, overexpression of HDT701 in rice enhances salt and osmotic stress resistance during the seedling stage
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	abiotic stress	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Taken together, our findings suggested that HDT701 may play an important role in regulating seed germination in response to abiotic stresses in rice
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	salt	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Overexpression of HDT701 in rice decreases ABA, salt and osmotic stress resistance during seed germination
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	salt	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Moreover, overexpression of HDT701 in rice enhances salt and osmotic stress resistance during the seedling stage
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	seed germination	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Overexpression of HDT701 in rice decreases ABA, salt and osmotic stress resistance during seed germination
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	seed germination	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Delayed seed germination of HDT701 overexpression lines is associated with decreased histone H4 acetylation and down-regulated expression of GA biosynthetic genes
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	seed germination	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Taken together, our findings suggested that HDT701 may play an important role in regulating seed germination in response to abiotic stresses in rice
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	stress	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Overexpression of HDT701 in rice decreases ABA, salt and osmotic stress resistance during seed germination
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	stress	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Moreover, overexpression of HDT701 in rice enhances salt and osmotic stress resistance during the seedling stage
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	ga	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Delayed seed germination of HDT701 overexpression lines is associated with decreased histone H4 acetylation and down-regulated expression of GA biosynthetic genes
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	GA biosynthetic	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Delayed seed germination of HDT701 overexpression lines is associated with decreased histone H4 acetylation and down-regulated expression of GA biosynthetic genes
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	GA	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Delayed seed germination of HDT701 overexpression lines is associated with decreased histone H4 acetylation and down-regulated expression of GA biosynthetic genes
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	nucleus	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	HDT701 is localized at the subcellular level in the nucleus
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	biotic stress	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Taken together, our findings suggested that HDT701 may play an important role in regulating seed germination in response to abiotic stresses in rice
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	resistance	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Overexpression of HDT701 in rice decreases ABA, salt and osmotic stress resistance during seed germination
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	resistance	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Moreover, overexpression of HDT701 in rice enhances salt and osmotic stress resistance during the seedling stage
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	floral	Histone Deacetylase 701 (HDT701) Induces Flowering in Rice by Modulating Expression of OsIDS1.	Expression levels of florigens Heading date 3a (Hd3a) and Rice Flowering Locus<U+00A0>T1 (RFT1), and their immediate upstream floral activator Early<U+00A0>heading date 1 (Ehd1), were significantly decreased in the<U+00A0>hdt701 mutants, indicating that HDT701 functions upstream of Ehd1 in controlling flowering time
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	heading date	Histone Deacetylase 701 (HDT701) Induces Flowering in Rice by Modulating Expression of OsIDS1.	Expression levels of florigens Heading date 3a (Hd3a) and Rice Flowering Locus<U+00A0>T1 (RFT1), and their immediate upstream floral activator Early<U+00A0>heading date 1 (Ehd1), were significantly decreased in the<U+00A0>hdt701 mutants, indicating that HDT701 functions upstream of Ehd1 in controlling flowering time
OsHDT1|HDT701	Os05g0597100	LOC_Os05g51830	flowering time	Histone Deacetylase 701 (HDT701) Induces Flowering in Rice by Modulating Expression of OsIDS1.	Expression levels of florigens Heading date 3a (Hd3a) and Rice Flowering Locus<U+00A0>T1 (RFT1), and their immediate upstream floral activator Early<U+00A0>heading date 1 (Ehd1), were significantly decreased in the<U+00A0>hdt701 mutants, indicating that HDT701 functions upstream of Ehd1 in controlling flowering time
OsHFP	Os04g0213100	LOC_Os04g13540	cell death	A structurally novel hemopexin fold protein of rice plays role in chlorophyll degradation	The possible role of OsHFP in regulating programmed cell death in anther green tissues of rice is proposed
OsHFP	Os04g0213100	LOC_Os04g13540	root	A structurally novel hemopexin fold protein of rice plays role in chlorophyll degradation	Heterologous expression of OsHFP in green leaf tissues resulted in chlorophyll degradation; however, stable expression of OsHFP was observed in transgenic hairy roots, a non-green tissue
OsHFP	Os04g0213100	LOC_Os04g13540	leaf	A structurally novel hemopexin fold protein of rice plays role in chlorophyll degradation	Heterologous expression of OsHFP in green leaf tissues resulted in chlorophyll degradation; however, stable expression of OsHFP was observed in transgenic hairy roots, a non-green tissue
OsHFP	Os04g0213100	LOC_Os04g13540	flower	A structurally novel hemopexin fold protein of rice plays role in chlorophyll degradation	The expression of the single copy OsHFP gene was detected in rice flower buds
OsHFP	Os04g0213100	LOC_Os04g13540	anther	A structurally novel hemopexin fold protein of rice plays role in chlorophyll degradation	The possible role of OsHFP in regulating programmed cell death in anther green tissues of rice is proposed
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	seed	Metabolic redesign of vitamin E biosynthesis in plants for tocotrienol production and increased antioxidant content	cDNAs encoding homogentisic acid geranylgeranyl transferase (HGGT), which catalyzes the committed step of tocotrienol biosynthesis, were isolated from barley, wheat and rice seeds
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	seed	Metabolic redesign of vitamin E biosynthesis in plants for tocotrienol production and increased antioxidant content	Overexpression of the barley HGGT in corn seeds resulted in an increase in tocotrienol and tocopherol content of as much as six-fold
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	development	SGD1, a key enzyme in tocopherol biosynthesis, is essential for plant development and cold tolerance in rice.	Our results indicate that SGD1 is essential for plant development and cold tolerance in rice
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	map-based cloning	SGD1, a key enzyme in tocopherol biosynthesis, is essential for plant development and cold tolerance in rice.	A map-based cloning strategy and subsequent complementation test showed that SGD1 encodes homogentisate phytyltransferase (HPT), a key enzyme in tocopherol biosynthesis
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	tolerance	SGD1, a key enzyme in tocopherol biosynthesis, is essential for plant development and cold tolerance in rice.	Our results indicate that SGD1 is essential for plant development and cold tolerance in rice
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	cold tolerance	SGD1, a key enzyme in tocopherol biosynthesis, is essential for plant development and cold tolerance in rice.	Our results indicate that SGD1 is essential for plant development and cold tolerance in rice
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	plant development	SGD1, a key enzyme in tocopherol biosynthesis, is essential for plant development and cold tolerance in rice.	Our results indicate that SGD1 is essential for plant development and cold tolerance in rice
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	growth	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	The rtd1 mutant showed overall growth retardation throughout the growth period
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	growth	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	The cold-related C-repeat-binding factor (CBF)/dehydration-responsive element-binding protein 1 (DREB1) genes were significantly upregulated in rtd1 under natural growth conditions
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	development	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	RTD1 encodes a homogentisate phytyltransferase catalyzing a key step in rice tocopherol biosynthesis, confers cold tolerance and regulates rice development by affecting the accumulation of DELLA protein SLENDER RICE1
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	map-based cloning	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	Map-based cloning revealed that the RTD1 gene encoded a homogentisate phytyltransferase, a key enzyme catalyzing the committed step in tocopherol biosynthesis
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	tolerance	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	RTD1 encodes a homogentisate phytyltransferase catalyzing a key step in rice tocopherol biosynthesis, confers cold tolerance and regulates rice development by affecting the accumulation of DELLA protein SLENDER RICE1
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	tolerance	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	Cold tolerance was found to be reduced in rtd1
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	gibberellin	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	Moreover, rtd1 exhibited a reduced response to gibberellin (GA)
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	cold tolerance	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	RTD1 encodes a homogentisate phytyltransferase catalyzing a key step in rice tocopherol biosynthesis, confers cold tolerance and regulates rice development by affecting the accumulation of DELLA protein SLENDER RICE1
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	cold tolerance	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	Cold tolerance was found to be reduced in rtd1
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	Gibberellin	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	Moreover, rtd1 exhibited a reduced response to gibberellin (GA)
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	seed	Antioxidant activity and inhibition of lipid peroxidation in germinating seeds of transgenic soybean expressing OsHGGT.	Therefore, it appears that the antioxidant potential of transgenic oil-producing plants such as soybean, sunflower, and corn may be enhanced by overexpressing OsHGGT during seed germination
OsHGGT|HGGT|SGD1|RTD1	Os06g0658900	LOC_Os06g44840	seed germination	Antioxidant activity and inhibition of lipid peroxidation in germinating seeds of transgenic soybean expressing OsHGGT.	Therefore, it appears that the antioxidant potential of transgenic oil-producing plants such as soybean, sunflower, and corn may be enhanced by overexpressing OsHGGT during seed germination
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	brown planthopper	Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder	We cloned a chloroplast-localized type 2 13-lipoxygenase gene of rice, OsHI-LOX, whose transcripts were up-regulated in response to feeding by the rice striped stem borer (SSB) Chilo suppressalis and the rice brown planthopper (BPH) Niaparvata lugens, as well as by mechanical wounding and treatment with JA
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	ethylene	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	The antisense expression of OsNPR1 (as-npr1), which reduced the expression of the gene by 50%, increased elicited levels of JA and ethylene (ET) as well as of expression of a lipoxygenase gene OsHI-LOX and an ACC synthase gene OsACS2
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	leaf	Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder	Antisense expression of OsHI-LOX (as-lox) reduced SSB- or BPH-induced JA and trypsin protease inhibitor (TrypPI) levels, improved the larval performance of SBB as well as that of the rice leaf folder (LF) Cnaphalocrocis medinalis, and increased the damage caused by SSB and LF larvae
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	ja	Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder	Antisense expression of OsHI-LOX (as-lox) reduced SSB- or BPH-induced JA and trypsin protease inhibitor (TrypPI) levels, improved the larval performance of SBB as well as that of the rice leaf folder (LF) Cnaphalocrocis medinalis, and increased the damage caused by SSB and LF larvae
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	ja	Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder	These results imply that OsHI-LOX is involved in herbivore-induced JA biosynthesis, and plays contrasting roles in controlling rice resistance to chewing and phloem-feeding herbivores
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	ja	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	The antisense expression of OsNPR1 (as-npr1), which reduced the expression of the gene by 50%, increased elicited levels of JA and ethylene (ET) as well as of expression of a lipoxygenase gene OsHI-LOX and an ACC synthase gene OsACS2
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	chloroplast	Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder	We cloned a chloroplast-localized type 2 13-lipoxygenase gene of rice, OsHI-LOX, whose transcripts were up-regulated in response to feeding by the rice striped stem borer (SSB) Chilo suppressalis and the rice brown planthopper (BPH) Niaparvata lugens, as well as by mechanical wounding and treatment with JA
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	stem	Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder	We cloned a chloroplast-localized type 2 13-lipoxygenase gene of rice, OsHI-LOX, whose transcripts were up-regulated in response to feeding by the rice striped stem borer (SSB) Chilo suppressalis and the rice brown planthopper (BPH) Niaparvata lugens, as well as by mechanical wounding and treatment with JA
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	ja	OsMPK3 positively regulates the JA signaling pathway and plant resistance to a chewing herbivore in rice	Silencing OsMPK3 (ir-mpk3) reduced the expression of the gene by 50-70 %, decreased elicited levels of JA and diminished the expression of a lipoxygenase gene OsHI-LOX and an allene oxide synthase gene OsAOS1
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	ethylene	The chloroplast-localized phospholipases D alpha4 and alpha5 regulate herbivore-induced direct and indirect defenses in rice	Antisense expression of OsPLDalpha4 and -alpha5 (as-pld), which resulted in a 50% reduction of the expression of the two genes, reduced elicited levels of linolenic acid, JA, green leaf volatiles, and ethylene and attenuated the SSB-induced expression of a mitogen-activated protein kinase (OsMPK3), a lipoxygenase (OsHI-LOX), a hydroperoxide lyase (OsHPL3), as well as a 1-aminocyclopropane-1-carboxylic acid synthase (OsACS2)
OsHI-LOX|OsLOX9	Os08g0508800	LOC_Os08g39840	leaf	The chloroplast-localized phospholipases D alpha4 and alpha5 regulate herbivore-induced direct and indirect defenses in rice	Antisense expression of OsPLDalpha4 and -alpha5 (as-pld), which resulted in a 50% reduction of the expression of the two genes, reduced elicited levels of linolenic acid, JA, green leaf volatiles, and ethylene and attenuated the SSB-induced expression of a mitogen-activated protein kinase (OsMPK3), a lipoxygenase (OsHI-LOX), a hydroperoxide lyase (OsHPL3), as well as a 1-aminocyclopropane-1-carboxylic acid synthase (OsACS2)
OsHI-XIP	Os05g0247100	LOC_Os05g15770	growth	Overexpression of a Xylanase Inhibitor Gene, OsHI-XIP, Enhances Resistance in Rice to Herbivores	Moreover, overexpression of OsHI-XIP decreased the feeding and oviposion preferences of the rice brown planthopper (BPH) Nilaparvata lugens, but did not influence the growth and development of rice plants
OsHI-XIP	Os05g0247100	LOC_Os05g15770	resistance	Overexpression of a Xylanase Inhibitor Gene, OsHI-XIP, Enhances Resistance in Rice to Herbivores	The results suggest that the rice XIP-type xylanase inhibitor OsHI-XIP is involved in the resistance in rice to herbivores
OsHI-XIP	Os05g0247100	LOC_Os05g15770	development	Overexpression of a Xylanase Inhibitor Gene, OsHI-XIP, Enhances Resistance in Rice to Herbivores	Moreover, overexpression of OsHI-XIP decreased the feeding and oviposion preferences of the rice brown planthopper (BPH) Nilaparvata lugens, but did not influence the growth and development of rice plants
OsHI-XIP	Os05g0247100	LOC_Os05g15770	brown planthopper	Overexpression of a Xylanase Inhibitor Gene, OsHI-XIP, Enhances Resistance in Rice to Herbivores	Moreover, overexpression of OsHI-XIP decreased the feeding and oviposion preferences of the rice brown planthopper (BPH) Nilaparvata lugens, but did not influence the growth and development of rice plants
OsHIGD2	Os07g0673900	LOC_Os07g47670	leaf	A novel rice protein family of OsHIGDs may be involved in early signalling of hypoxia-promoted stem growth in deepwater rice.	Transient expression of OsHIGD2 in leaf epidermal cells of Nicotiana benthamiana provided evidence that the protein is localized to mitochondria
OsHIGD2	Os07g0673900	LOC_Os07g47670	submergence	A novel rice protein family of OsHIGDs may be involved in early signalling of hypoxia-promoted stem growth in deepwater rice.	Among the genes, OsHIGD2 showed the fastest and strongest induction by hypoxia as well as submergence
OsHIGD2	Os07g0673900	LOC_Os07g47670	mitochondria	A novel rice protein family of OsHIGDs may be involved in early signalling of hypoxia-promoted stem growth in deepwater rice.	Transient expression of OsHIGD2 in leaf epidermal cells of Nicotiana benthamiana provided evidence that the protein is localized to mitochondria
OsHIP1|HAF1	Os04g0648800	LOC_Os04g55510	heading date	The RING-Finger Ubiquitin Ligase HAF1 Mediates Heading date 1 Degradation during Photoperiodic Flowering in Rice.	The RING-Finger Ubiquitin Ligase HAF1 Mediates Heading date 1 Degradation during Photoperiodic Flowering in Rice.
OsHIP1|HAF1	Os04g0648800	LOC_Os04g55510	heading date	The RING-Finger Ubiquitin Ligase HAF1 Mediates Heading date 1 Degradation during Photoperiodic Flowering in Rice.	The haf1 mutant exhibits a later flowering heading date under both short-day and long-day conditions
OsHIP1|HAF1	Os04g0648800	LOC_Os04g55510	heading date	The RING-Finger Ubiquitin Ligase HAF1 Mediates Heading date 1 Degradation during Photoperiodic Flowering in Rice.	In addition, the haf1 hd1 double mutant headed as late as hd1 plants under short-day conditions but exhibited a heading date similar to haf1 under long-day conditions, thus indicating that HAF1 may determine heading date mainly through Hd1 under short-day conditions
OsHIP1|HAF1	Os04g0648800	LOC_Os04g55510	Ubiquitin	The RING-Finger Ubiquitin Ligase HAF1 Mediates Heading date 1 Degradation during Photoperiodic Flowering in Rice.	The RING-Finger Ubiquitin Ligase HAF1 Mediates Heading date 1 Degradation during Photoperiodic Flowering in Rice.
OsHIP1|HAF1	Os04g0648800	LOC_Os04g55510	heading date	HAF1 Modulates Circadian Accumulation of OsELF3 Controlling Heading Date Under Long-day Conditions in Rice.	HAF1 Modulates Circadian Accumulation of OsELF3 Controlling Heading Date Under Long-day Conditions in Rice.
OsHIP1|HAF1	Os04g0648800	LOC_Os04g55510	heading date	HAF1 Modulates Circadian Accumulation of OsELF3 Controlling Heading Date Under Long-day Conditions in Rice.	An amino acid variation (L558S) within the interaction domain of OsELF3 with HAF1 greatly contributes to the variation in heading date among japonica rice accessions
OsHIP1|HAF1	Os04g0648800	LOC_Os04g55510	heading date	HAF1 Modulates Circadian Accumulation of OsELF3 Controlling Heading Date Under Long-day Conditions in Rice.	Taken together, our findings suggest that HAF1 precisely modulates the diurnal rhythm of OsELF3 accumulation to ensure the appropriate heading date in rice
OsHIPL1	Os03g0691800	LOC_Os03g48540	seed	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 RNA sequencing (RNA-seq) revealed that the ABA-related genes were involved in the OsHIPL1 regulation of seed vigour in rice
OsHIPL1	Os03g0691800	LOC_Os03g48540	seed	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 These results indicate that the regulation of seed vigour of OsHIPL1 may be through modulating endogenous ABA levels and altering OsABIs expression during seed germination in rice
OsHIPL1	Os03g0691800	LOC_Os03g48540	seed	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 Meanwhile, we found that OsHIPL1 interacted with the aquaporin OsPIP1;1, then affected water uptake to promote rice seed germination
OsHIPL1	Os03g0691800	LOC_Os03g48540	seed	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a Hap1 haplotype of OsHIPL1 that was positively correlated with seed germination
OsHIPL1	Os03g0691800	LOC_Os03g48540	seed	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 Our findings showed novel insights into the molecular mechanism of OsHIPL1 on seed vigour
OsHIPL1	Os03g0691800	LOC_Os03g48540	seed germination	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 These results indicate that the regulation of seed vigour of OsHIPL1 may be through modulating endogenous ABA levels and altering OsABIs expression during seed germination in rice
OsHIPL1	Os03g0691800	LOC_Os03g48540	seed germination	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 Meanwhile, we found that OsHIPL1 interacted with the aquaporin OsPIP1;1, then affected water uptake to promote rice seed germination
OsHIPL1	Os03g0691800	LOC_Os03g48540	seed germination	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a Hap1 haplotype of OsHIPL1 that was positively correlated with seed germination
OsHIPL1	Os03g0691800	LOC_Os03g48540	ABA	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 The higher levels of endogenous ABA were measured in germinating seeds of OsHIPL1 mutants and NIL-qsv3 line compared to IR26 plants, with two up-regulated ABA biosynthesis genes (OsZEP and OsNCED4) and one down-regulated ABA catabolism gene OsABA8ox3
OsHIPL1	Os03g0691800	LOC_Os03g48540	ABA	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 These results indicate that the regulation of seed vigour of OsHIPL1 may be through modulating endogenous ABA levels and altering OsABIs expression during seed germination in rice
OsHIPL1	Os03g0691800	LOC_Os03g48540	nucleus	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 OsHIPL1 was mainly localized in the plasma membrane and nucleus
OsHIPL1	Os03g0691800	LOC_Os03g48540	abscisic acid	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 The expression of abscisic acid-insensitive 3 (OsABI3), OsABI4 and OsABI5 was significantly up-regulated in germinating seeds of OsHIPL1 mutants and NIL-qsv3 line compared to IR26 plants
OsHIPL1	Os03g0691800	LOC_Os03g48540	plasma membrane	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 OsHIPL1 was mainly localized in the plasma membrane and nucleus
OsHIPL1	Os03g0691800	LOC_Os03g48540	 ABA 	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 The higher levels of endogenous ABA were measured in germinating seeds of OsHIPL1 mutants and NIL-qsv3 line compared to IR26 plants, with two up-regulated ABA biosynthesis genes (OsZEP and OsNCED4) and one down-regulated ABA catabolism gene OsABA8ox3
OsHIPL1	Os03g0691800	LOC_Os03g48540	 ABA 	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 These results indicate that the regulation of seed vigour of OsHIPL1 may be through modulating endogenous ABA levels and altering OsABIs expression during seed germination in rice
OsHIPL1	Os03g0691800	LOC_Os03g48540	ABA biosynthesis	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 The higher levels of endogenous ABA were measured in germinating seeds of OsHIPL1 mutants and NIL-qsv3 line compared to IR26 plants, with two up-regulated ABA biosynthesis genes (OsZEP and OsNCED4) and one down-regulated ABA catabolism gene OsABA8ox3
OsHIPL1	Os03g0691800	LOC_Os03g48540	ABA catabolism	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	 The higher levels of endogenous ABA were measured in germinating seeds of OsHIPL1 mutants and NIL-qsv3 line compared to IR26 plants, with two up-regulated ABA biosynthesis genes (OsZEP and OsNCED4) and one down-regulated ABA catabolism gene OsABA8ox3
OsHIPL1	Os03g0691800	LOC_Os03g48540	seed vigour	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice
OsHIPP16	Os02g0585200	LOC_Os02g37330	leaf	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 Histochemical analysis with pHIPP16::GUS reveals that OsHIPP16 is primarily expressed in root and leaf vascular tissues
OsHIPP16	Os02g0585200	LOC_Os02g37330	root	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 Histochemical analysis with pHIPP16::GUS reveals that OsHIPP16 is primarily expressed in root and leaf vascular tissues
OsHIPP16	Os02g0585200	LOC_Os02g37330	growth	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 Transgenic rice overexpressing OsHIPP16 (OE) improved rice growth with increased plant height, biomass, and chlorophyll content but with a lower degree of oxidative injury and Cd accumulation, whereas knocking out OsHIPP16 by CRISPR-Cas9 compromised the growth and physiological response
OsHIPP16	Os02g0585200	LOC_Os02g37330	stress	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 OsHIPP16 was strongly induced by Cd stress
OsHIPP16	Os02g0585200	LOC_Os02g37330	tolerance	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 Expression of OsHIPP16 in the yeast mutant strain ycf1 sensitive to Cd conferred cellular tolerance
OsHIPP16	Os02g0585200	LOC_Os02g37330	oxidative	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 Transgenic rice overexpressing OsHIPP16 (OE) improved rice growth with increased plant height, biomass, and chlorophyll content but with a lower degree of oxidative injury and Cd accumulation, whereas knocking out OsHIPP16 by CRISPR-Cas9 compromised the growth and physiological response
OsHIPP16	Os02g0585200	LOC_Os02g37330	plant height	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 Transgenic rice overexpressing OsHIPP16 (OE) improved rice growth with increased plant height, biomass, and chlorophyll content but with a lower degree of oxidative injury and Cd accumulation, whereas knocking out OsHIPP16 by CRISPR-Cas9 compromised the growth and physiological response
OsHIPP16	Os02g0585200	LOC_Os02g37330	cadmium	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.
OsHIPP16	Os02g0585200	LOC_Os02g37330	chlorophyll	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 Transgenic rice overexpressing OsHIPP16 (OE) improved rice growth with increased plant height, biomass, and chlorophyll content but with a lower degree of oxidative injury and Cd accumulation, whereas knocking out OsHIPP16 by CRISPR-Cas9 compromised the growth and physiological response
OsHIPP16	Os02g0585200	LOC_Os02g37330	detoxification	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 These results suggest that adequate expression of OsHIPP16 would profoundly contribute to Cd detoxification by regulating Cd accumulation in rice, suggesting that both OE and oshipp16 mutant plants have great potentials for restricting Cd acquisition in the rice crop and phytoremediation of Cd-contaminated wetland soils
OsHIPP16	Os02g0585200	LOC_Os02g37330	chlorophyll content	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	 Transgenic rice overexpressing OsHIPP16 (OE) improved rice growth with increased plant height, biomass, and chlorophyll content but with a lower degree of oxidative injury and Cd accumulation, whereas knocking out OsHIPP16 by CRISPR-Cas9 compromised the growth and physiological response
OsHIPP28	Os10g0209700	LOC_Os10g14870	disease	A small secreted protein, RsMf8HN, in Rhizoctonia solani triggers plant immune response, which interacts with rice OsHIPP28	We confirmed the occurrence of in vivo cross-interactions of RsMf8HN with a rice molecule, the heavy metal-associated isoprenylated plant protein OsHIPP28, which is a protein related to the disease susceptibility factor Pi21.
OsHIPP28	Os10g0209700	LOC_Os10g14870	heavy metal	A small secreted protein, RsMf8HN, in Rhizoctonia solani triggers plant immune response, which interacts with rice OsHIPP28	We confirmed the occurrence of in vivo cross-interactions of RsMf8HN with a rice molecule, the heavy metal-associated isoprenylated plant protein OsHIPP28, which is a protein related to the disease susceptibility factor Pi21.
OsHIR1	Os08g0398400	LOC_Os08g30790	cell death	Rice hypersensitive induced reaction protein 1 (OsHIR1) associates with plasma membrane and triggers hypersensitive cell death	Here we show that OsHIR1 triggers hypersensitive cell death and its localization to the plasma membrane is enhanced by OsLRR1
OsHIR1	Os08g0398400	LOC_Os08g30790	cell death	Rice hypersensitive induced reaction protein 1 (OsHIR1) associates with plasma membrane and triggers hypersensitive cell death	Rice hypersensitive induced reaction protein 1 (OsHIR1) associates with plasma membrane and triggers hypersensitive cell death
OsHIRP1	Os03g0302200	LOC_Os03g19020	drought	Oryza sativa heat-induced RING finger protein 1 (OsHIRP1) positively regulates plant response to heat stress.	Transcription of the OsHIRP1 was upregulated in response to heat and drought treatment
OsHIRP1	Os03g0302200	LOC_Os03g19020	stress	Oryza sativa heat-induced RING finger protein 1 (OsHIRP1) positively regulates plant response to heat stress.	OsHIRP1 is an E3 ligase that acts as a positive regulator in the plant response to heat stress, thus providing important information relating to adaptation and regulation under heat stress in plant
OsHIRP1	Os03g0302200	LOC_Os03g19020	nucleus	Oryza sativa heat-induced RING finger protein 1 (OsHIRP1) positively regulates plant response to heat stress.	Two interacting partners, OsARK4 and OsHRK1, were identified via yeast-two-hybrid screening, which were mainly targeted to the nucleus (OsARK4) and cytosol (OsHRK1), and their interactions with OsHIRP1 were confirmed by biomolecular fluorescence complementation (BiFC)
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt stress	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	The up-regulation of OsHKT1;1, OsHAK10 and OsHAK16 might contribute to accumulation of Na+ in old leaves under salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	transporter	Sodium transport and HKT transporters: the rice model	Yeast expressions of OsHKT1 and OsHKT4 proved that they are Na+ transporters of high and low affinity, respectively, which are sensitive to K+ and Ba2+
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	root	Sodium transport and HKT transporters: the rice model	In roots, the expressions were much lower than in shoots, except for OsHKT4 and OsHKT1 in K+-starved plants
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	shoot	Sodium transport and HKT transporters: the rice model	In roots, the expressions were much lower than in shoots, except for OsHKT4 and OsHKT1 in K+-starved plants
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	The up-regulation of OsHKT1;1, OsHAK10 and OsHAK16 might contribute to accumulation of Na+ in old leaves under salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	leaf	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	OsHKT1;1 was expressed mainly in the phloem of leaf blades and up-regulated in response to salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	leaf	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Taken together, these results suggest that OsHKT1;1 has a role in controlling Na+ concentration and preventing sodium toxicity in leaf blades, and is regulated by the OsMYBc transcription factor
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	transcription factor	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	transcription factor	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Using a yeast one-hybrid approach, a novel MYB coiled-coil type transcription factor, OsMYBc, was found to bind to the OsHKT1;1 promoter
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	transcription factor	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Taken together, these results suggest that OsHKT1;1 has a role in controlling Na+ concentration and preventing sodium toxicity in leaf blades, and is regulated by the OsMYBc transcription factor
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	The oshkt1;1 mutant plants displayed hypersensitivity to salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	OsHKT1;1 was expressed mainly in the phloem of leaf blades and up-regulated in response to salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Knockout of OsMYBc resulted in a reduction in NaCl-induced expression of OsHKT1;1 and salt sensitivity
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt tolerance	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt stress	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	The oshkt1;1 mutant plants displayed hypersensitivity to salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt stress	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	OsHKT1;1 was expressed mainly in the phloem of leaf blades and up-regulated in response to salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	tolerance	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	stress	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	The oshkt1;1 mutant plants displayed hypersensitivity to salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	stress	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	OsHKT1;1 was expressed mainly in the phloem of leaf blades and up-regulated in response to salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	transporter	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	phloem	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	OsHKT1;1 was expressed mainly in the phloem of leaf blades and up-regulated in response to salt stress
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	Salt Sensitivity	The OsHKT1;1 Transporter is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Knockout of OsMYBc resulted in a reduction in NaCl-induced expression of OsHKT1;1 and salt sensitivity
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt	Expression and Ion Transport Activity of Rice OsHKT1;1 Variants.	OsHKT1;1 in rice, belongs to the high-affinity K+ Transporter family, has been found to be involved in salt tolerance
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt	Expression and Ion Transport Activity of Rice OsHKT1;1 Variants.	 In salt tolerant rice, Pokkali, eight OsHKT1;1 variants (V1-V8) were identified in addition to the full-length OsHKT1;1 (FL) cDNA
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	tolerance	Expression and Ion Transport Activity of Rice OsHKT1;1 Variants.	OsHKT1;1 in rice, belongs to the high-affinity K+ Transporter family, has been found to be involved in salt tolerance
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt tolerance	Expression and Ion Transport Activity of Rice OsHKT1;1 Variants.	OsHKT1;1 in rice, belongs to the high-affinity K+ Transporter family, has been found to be involved in salt tolerance
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	transporter	Expression and Ion Transport Activity of Rice OsHKT1;1 Variants.	OsHKT1;1 in rice, belongs to the high-affinity K+ Transporter family, has been found to be involved in salt tolerance
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	stress	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Under salt stress treatment, the expression levels of OsbZIP05, OsHKT1;1 and OsDREB1B were significantly lower yet the level of OsHKT2;1 was significantly higher in oswrky28 mutants than those in wide type plants
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Under salt stress treatment, the expression levels of OsbZIP05, OsHKT1;1 and OsDREB1B were significantly lower yet the level of OsHKT2;1 was significantly higher in oswrky28 mutants than those in wide type plants
OsHKT1;1|OsHKT4	Os04g0607500	LOC_Os04g51820	salt stress	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Under salt stress treatment, the expression levels of OsbZIP05, OsHKT1;1 and OsDREB1B were significantly lower yet the level of OsHKT2;1 was significantly higher in oswrky28 mutants than those in wide type plants
OsHKT1;3	Os02g0175000	LOC_Os02g07830	transporter	Identification of rice cornichon as a possible cargo receptor for the Golgi-localized sodium transporter OsHKT1;3.	Here it is demonstrated at the cellular level that rice cornichon OsCNIH1 interacts with OsHKT1;3 and, in yeast cells, enables the expression of the sodium transporter to the Golgi apparatus
OsHKT1;4	Os04g0607600	LOC_Os04g51830	sheath	A two-staged model of Na+ exclusion in rice explained by 3D modeling of HKT transporters and alternative splicing	For OsHKT1;4, alternative splicing of transcript and the anatomical complexity of the sheath needed to be taken into account
OsHKT1;4	Os04g0607600	LOC_Os04g51830	sheath	A two-staged model of Na+ exclusion in rice explained by 3D modeling of HKT transporters and alternative splicing	Thus, Na(+) accumulation in a specific leaf blade seems to be regulated by abundance of a correctly spliced OsHKT1;4 transcript in a corresponding sheath
OsHKT1;4	Os04g0607600	LOC_Os04g51830	leaf	A two-staged model of Na+ exclusion in rice explained by 3D modeling of HKT transporters and alternative splicing	Thus, Na(+) accumulation in a specific leaf blade seems to be regulated by abundance of a correctly spliced OsHKT1;4 transcript in a corresponding sheath
OsHKT1;4	Os04g0607600	LOC_Os04g51830	leaf	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	The level of OsHKT1;4 transcripts was prominent in leaf sheaths throughout the growth stages
OsHKT1;4	Os04g0607600	LOC_Os04g51830	leaf	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Taken together, our results indicate a newly recognized function of OsHKT1;4 in Na(+) exclusion in stems together with leaf sheaths, thus excluding Na(+) from leaf blades of a japonica rice cultivar in the reproductive growth stage, but the contribution is low when the plants are in the vegetative growth stage
OsHKT1;4	Os04g0607600	LOC_Os04g51830	xylem	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	In addition, (22)Na(+) tracer experiments using peduncles of RNAi and WT plants suggested xylem Na(+) unloading by OsHKT1;4
OsHKT1;4	Os04g0607600	LOC_Os04g51830	stem	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Unexpectedly however, we demonstrate here accumulation of OsHKT1;4 transcripts in the stem including internode II and peduncle in the reproductive growth stage
OsHKT1;4	Os04g0607600	LOC_Os04g51830	growth	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	The level of OsHKT1;4 transcripts was prominent in leaf sheaths throughout the growth stages
OsHKT1;4	Os04g0607600	LOC_Os04g51830	growth	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Unexpectedly however, we demonstrate here accumulation of OsHKT1;4 transcripts in the stem including internode II and peduncle in the reproductive growth stage
OsHKT1;4	Os04g0607600	LOC_Os04g51830	growth	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Moreover, phenotypic analysis of OsHKT1;4 RNAi plants in the vegetative growth stage revealed no profound influence on the growth and ion accumulation in comparison with WT plants upon salinity stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	growth	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Taken together, our results indicate a newly recognized function of OsHKT1;4 in Na(+) exclusion in stems together with leaf sheaths, thus excluding Na(+) from leaf blades of a japonica rice cultivar in the reproductive growth stage, but the contribution is low when the plants are in the vegetative growth stage
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salinity	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Moreover, phenotypic analysis of OsHKT1;4 RNAi plants in the vegetative growth stage revealed no profound influence on the growth and ion accumulation in comparison with WT plants upon salinity stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	vegetative	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Moreover, phenotypic analysis of OsHKT1;4 RNAi plants in the vegetative growth stage revealed no profound influence on the growth and ion accumulation in comparison with WT plants upon salinity stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	vegetative	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Taken together, our results indicate a newly recognized function of OsHKT1;4 in Na(+) exclusion in stems together with leaf sheaths, thus excluding Na(+) from leaf blades of a japonica rice cultivar in the reproductive growth stage, but the contribution is low when the plants are in the vegetative growth stage
OsHKT1;4	Os04g0607600	LOC_Os04g51830	reproductive	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Unexpectedly however, we demonstrate here accumulation of OsHKT1;4 transcripts in the stem including internode II and peduncle in the reproductive growth stage
OsHKT1;4	Os04g0607600	LOC_Os04g51830	reproductive	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Taken together, our results indicate a newly recognized function of OsHKT1;4 in Na(+) exclusion in stems together with leaf sheaths, thus excluding Na(+) from leaf blades of a japonica rice cultivar in the reproductive growth stage, but the contribution is low when the plants are in the vegetative growth stage
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salinity stress	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Moreover, phenotypic analysis of OsHKT1;4 RNAi plants in the vegetative growth stage revealed no profound influence on the growth and ion accumulation in comparison with WT plants upon salinity stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	stress	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Moreover, phenotypic analysis of OsHKT1;4 RNAi plants in the vegetative growth stage revealed no profound influence on the growth and ion accumulation in comparison with WT plants upon salinity stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	transporter	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Here, we report results of the functional characterization of the OsHKT1;4 transporter in rice
OsHKT1;4	Os04g0607600	LOC_Os04g51830	reproductive growth	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Unexpectedly however, we demonstrate here accumulation of OsHKT1;4 transcripts in the stem including internode II and peduncle in the reproductive growth stage
OsHKT1;4	Os04g0607600	LOC_Os04g51830	reproductive growth	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	Taken together, our results indicate a newly recognized function of OsHKT1;4 in Na(+) exclusion in stems together with leaf sheaths, thus excluding Na(+) from leaf blades of a japonica rice cultivar in the reproductive growth stage, but the contribution is low when the plants are in the vegetative growth stage
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt	T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.	T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt	T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.	Here, we have characterized a transfer DNA (T-DNA) insertion mutant line of rice, which overexpresses OsHKT1;4, owing to enhancer elements in the T-DNA, to gain an insight into the impact of OsHKT1;4 on salt tolerance of rice
OsHKT1;4	Os04g0607600	LOC_Os04g51830	tolerance	T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.	Here, we have characterized a transfer DNA (T-DNA) insertion mutant line of rice, which overexpresses OsHKT1;4, owing to enhancer elements in the T-DNA, to gain an insight into the impact of OsHKT1;4 on salt tolerance of rice
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt tolerance	T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.	Here, we have characterized a transfer DNA (T-DNA) insertion mutant line of rice, which overexpresses OsHKT1;4, owing to enhancer elements in the T-DNA, to gain an insight into the impact of OsHKT1;4 on salt tolerance of rice
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt stress	T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.	T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.
OsHKT1;4	Os04g0607600	LOC_Os04g51830	leaf	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	We observed that progressive desalinization of the xylem sap along its ascent to the leaf blades still occurred in plants grown at submillimolar Na+ concentration, and that OsHKT1;4 was involved in reducing xylem sap Na+ concentration in roots in these conditions too
OsHKT1;4	Os04g0607600	LOC_Os04g51830	xylem	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions
OsHKT1;4	Os04g0607600	LOC_Os04g51830	xylem	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	By analyzing transgenic rice plants expressing a GUS reporter gene construct, we observed that OsHKT1;4 is mainly expressed in xylem parenchyma in both roots and leaves
OsHKT1;4	Os04g0607600	LOC_Os04g51830	xylem	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Using mutant lines expressing artificial microRNA that selectively reduced OsHKT1;4 expression, the involvement of OsHKT1;4 in retrieving Na+ from the xylem sap in the roots upon salt stress was evidenced
OsHKT1;4	Os04g0607600	LOC_Os04g51830	xylem	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	We observed that progressive desalinization of the xylem sap along its ascent to the leaf blades still occurred in plants grown at submillimolar Na+ concentration, and that OsHKT1;4 was involved in reducing xylem sap Na+ concentration in roots in these conditions too
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Three rice HKT genes, OsHKT1;1, OsHKT1;4 and OsHKT1;5, are known to contribute to salt tolerance by reducing Na+ accumulation in shoots upon salt stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Using mutant lines expressing artificial microRNA that selectively reduced OsHKT1;4 expression, the involvement of OsHKT1;4 in retrieving Na+ from the xylem sap in the roots upon salt stress was evidenced
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Since OsHKT1;4 was found to be also well expressed in the roots in absence of salt stress, we extended the analysis of its role when plants were subjected to non-toxic Na+ conditions (0
OsHKT1;4	Os04g0607600	LOC_Os04g51830	tolerance	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Three rice HKT genes, OsHKT1;1, OsHKT1;4 and OsHKT1;5, are known to contribute to salt tolerance by reducing Na+ accumulation in shoots upon salt stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt tolerance	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Three rice HKT genes, OsHKT1;1, OsHKT1;4 and OsHKT1;5, are known to contribute to salt tolerance by reducing Na+ accumulation in shoots upon salt stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt stress	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Three rice HKT genes, OsHKT1;1, OsHKT1;4 and OsHKT1;5, are known to contribute to salt tolerance by reducing Na+ accumulation in shoots upon salt stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt stress	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Using mutant lines expressing artificial microRNA that selectively reduced OsHKT1;4 expression, the involvement of OsHKT1;4 in retrieving Na+ from the xylem sap in the roots upon salt stress was evidenced
OsHKT1;4	Os04g0607600	LOC_Os04g51830	salt stress	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Since OsHKT1;4 was found to be also well expressed in the roots in absence of salt stress, we extended the analysis of its role when plants were subjected to non-toxic Na+ conditions (0
OsHKT1;4	Os04g0607600	LOC_Os04g51830	stress	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Three rice HKT genes, OsHKT1;1, OsHKT1;4 and OsHKT1;5, are known to contribute to salt tolerance by reducing Na+ accumulation in shoots upon salt stress
OsHKT1;4	Os04g0607600	LOC_Os04g51830	stress	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Using mutant lines expressing artificial microRNA that selectively reduced OsHKT1;4 expression, the involvement of OsHKT1;4 in retrieving Na+ from the xylem sap in the roots upon salt stress was evidenced
OsHKT1;4	Os04g0607600	LOC_Os04g51830	transporter	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions
OsHKT1;4	Os04g0607600	LOC_Os04g51830	transporter	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	Here, we further investigate the mechanisms by which OsHKT1;4 contributes to this process and extend this analysis to the role of this transporter in plants in presence of low Na+ concentrations
OsHKT1;4	Os04g0607600	LOC_Os04g51830	xylem parenchyma	Constitutive Contribution by the Rice OsHKT1;4 Na + Transporter to Xylem Sap Desalinization and Low Na + Accumulation in Young Leaves Under Low as High External Na + Conditions	By analyzing transgenic rice plants expressing a GUS reporter gene construct, we observed that OsHKT1;4 is mainly expressed in xylem parenchyma in both roots and leaves
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salinity stress	A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K(+)/Na(+) ratio in leaves during salinity stress	Here we present a review on vital physiological functions of HKT transporters including AtHKT1;1 and OsHKT1;5 in preventing shoot Na(+) over-accumulation by mediating Na(+) exclusion from xylem vessels in the presence of a large amount of Na(+) thereby protecting leaves from salinity stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salinity	A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K(+)/Na(+) ratio in leaves during salinity stress	Here we present a review on vital physiological functions of HKT transporters including AtHKT1;1 and OsHKT1;5 in preventing shoot Na(+) over-accumulation by mediating Na(+) exclusion from xylem vessels in the presence of a large amount of Na(+) thereby protecting leaves from salinity stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt tolerance	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	We previously mapped a rice QTL, SKC1, that maintained K(+) homeostasis in the salt-tolerant variety under salt stress, consistent with the earlier finding that K(+) homeostasis is important in salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt tolerance	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	Physiological analysis suggested that SKC1 is involved in regulating K(+)/Na(+) homeostasis under salt stress, providing a potential tool for improving salt tolerance in crops
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	homeostasis	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	We previously mapped a rice QTL, SKC1, that maintained K(+) homeostasis in the salt-tolerant variety under salt stress, consistent with the earlier finding that K(+) homeostasis is important in salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	homeostasis	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	Physiological analysis suggested that SKC1 is involved in regulating K(+)/Na(+) homeostasis under salt stress, providing a potential tool for improving salt tolerance in crops
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	xylem	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	SKC1 is preferentially expressed in the parenchyma cells surrounding the xylem vessels
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	xylem	A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K(+)/Na(+) ratio in leaves during salinity stress	Here we present a review on vital physiological functions of HKT transporters including AtHKT1;1 and OsHKT1;5 in preventing shoot Na(+) over-accumulation by mediating Na(+) exclusion from xylem vessels in the presence of a large amount of Na(+) thereby protecting leaves from salinity stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	leaf	Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?	The association of leaf Na+ concentrations with cultivar-groups was very weak, but association with the OsHKT1;5 allele was generally strong
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	leaf	Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?	Seven major and three minor alleles of OsHKT1;5 were identified, and their comparisons with the leaf Na+ concentration showed that the Aromatic allele conferred the highest exclusion and the Japonica allele the least
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	leaf	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	In addition, lower expression of OsHKT1;5 and OsSOS1 in old leaves may decrease frequency of retrieving Na+ from old leaf cells
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	shoot	A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K(+)/Na(+) ratio in leaves during salinity stress	Here we present a review on vital physiological functions of HKT transporters including AtHKT1;1 and OsHKT1;5 in preventing shoot Na(+) over-accumulation by mediating Na(+) exclusion from xylem vessels in the presence of a large amount of Na(+) thereby protecting leaves from salinity stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	transporter	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	To understand the molecular basis of this QTL, we isolated the SKC1 gene by map-based cloning and found that it encoded a member of HKT-type transporters
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	transporter	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	Voltage-clamp analysis showed that SKC1 protein functions as a Na(+)-selective transporter
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	transporter	A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K(+)/Na(+) ratio in leaves during salinity stress	Here we present a review on vital physiological functions of HKT transporters including AtHKT1;1 and OsHKT1;5 in preventing shoot Na(+) over-accumulation by mediating Na(+) exclusion from xylem vessels in the presence of a large amount of Na(+) thereby protecting leaves from salinity stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt stress	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	We previously mapped a rice QTL, SKC1, that maintained K(+) homeostasis in the salt-tolerant variety under salt stress, consistent with the earlier finding that K(+) homeostasis is important in salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt stress	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	Physiological analysis suggested that SKC1 is involved in regulating K(+)/Na(+) homeostasis under salt stress, providing a potential tool for improving salt tolerance in crops
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	shoot	A two-staged model of Na+ exclusion in rice explained by 3D modeling of HKT transporters and alternative splicing	For OsHKT1;5, both transcript abundance and protein structural features within the selectivity filter could control shoot Na(+) accumulation in a range of rice varieties
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	We previously mapped a rice QTL, SKC1, that maintained K(+) homeostasis in the salt-tolerant variety under salt stress, consistent with the earlier finding that K(+) homeostasis is important in salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	A rice quantitative trait locus for salt tolerance encodes a sodium transporter	Physiological analysis suggested that SKC1 is involved in regulating K(+)/Na(+) homeostasis under salt stress, providing a potential tool for improving salt tolerance in crops
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	leaf	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	leaf	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Additionally, direct introduction of (22) Na(+) tracer to leaf sheaths also demonstrated the involvement of OsHKT1;5 in xylem Na(+) unloading in leaf sheaths
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	leaf	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Together with the characteristic (22) Na(+) allocation in the blade of the developing immature leaf in the mutants, these results suggest a novel function of OsHKT1;5 in mediating Na(+) exclusion in the phloem to prevent Na(+) transfer to young leaf blades
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	leaf	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Our findings further demonstrate that the function of OsHKT1;5 is crucial over growth stages of rice, including the protection of the next generation seeds as well as of vital leaf blades under salt stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	xylem	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Immuno-staining using an anti-OsHKT1;5 peptide antibody indicated that OsHKT1;5 is localized in cells adjacent to the xylem in roots
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	xylem	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Additionally, direct introduction of (22) Na(+) tracer to leaf sheaths also demonstrated the involvement of OsHKT1;5 in xylem Na(+) unloading in leaf sheaths
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	vascular bundle	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Furthermore, OsHKT1;5 was indicated to present in the plasma membrane and found to localize also in the phloem of diffuse vascular bundles in basal nodes
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	growth	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Our findings further demonstrate that the function of OsHKT1;5 is crucial over growth stages of rice, including the protection of the next generation seeds as well as of vital leaf blades under salt stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	Salt tolerance QTL analysis of rice has revealed that the SKC1 locus, which is involved in a higher K(+) /Na(+) ratio in shoots, corresponds to the OsHKT1;5 gene encoding a Na(+) -selective transporter
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 However, physiological roles of OsHKT1;5 in rice exposed to salt stress remain elusive and no OsHKT1;5 gene disruption mutants have been characterized to date
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Salt stress-induced increases in the OsHKT1;5 transcript was observed in roots and basal stems including basal nodes
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Our findings further demonstrate that the function of OsHKT1;5 is crucial over growth stages of rice, including the protection of the next generation seeds as well as of vital leaf blades under salt stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	tolerance	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	Salt tolerance QTL analysis of rice has revealed that the SKC1 locus, which is involved in a higher K(+) /Na(+) ratio in shoots, corresponds to the OsHKT1;5 gene encoding a Na(+) -selective transporter
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt tolerance	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	Salt tolerance QTL analysis of rice has revealed that the SKC1 locus, which is involved in a higher K(+) /Na(+) ratio in shoots, corresponds to the OsHKT1;5 gene encoding a Na(+) -selective transporter
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt stress	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 However, physiological roles of OsHKT1;5 in rice exposed to salt stress remain elusive and no OsHKT1;5 gene disruption mutants have been characterized to date
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt stress	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Salt stress-induced increases in the OsHKT1;5 transcript was observed in roots and basal stems including basal nodes
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt stress	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Our findings further demonstrate that the function of OsHKT1;5 is crucial over growth stages of rice, including the protection of the next generation seeds as well as of vital leaf blades under salt stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	stress	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 However, physiological roles of OsHKT1;5 in rice exposed to salt stress remain elusive and no OsHKT1;5 gene disruption mutants have been characterized to date
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	stress	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Our findings further demonstrate that the function of OsHKT1;5 is crucial over growth stages of rice, including the protection of the next generation seeds as well as of vital leaf blades under salt stress
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	reproductive	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	transporter	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	Salt tolerance QTL analysis of rice has revealed that the SKC1 locus, which is involved in a higher K(+) /Na(+) ratio in shoots, corresponds to the OsHKT1;5 gene encoding a Na(+) -selective transporter
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	phloem	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Furthermore, OsHKT1;5 was indicated to present in the plasma membrane and found to localize also in the phloem of diffuse vascular bundles in basal nodes
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	phloem	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Together with the characteristic (22) Na(+) allocation in the blade of the developing immature leaf in the mutants, these results suggest a novel function of OsHKT1;5 in mediating Na(+) exclusion in the phloem to prevent Na(+) transfer to young leaf blades
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	plasma membrane	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	 Furthermore, OsHKT1;5 was indicated to present in the plasma membrane and found to localize also in the phloem of diffuse vascular bundles in basal nodes
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	development	Analysis of genetic diversity and population structure using SSR markers and validation of a Cleavage Amplified Polymorphic Sequences (CAPS) marker involving the sodium transporter OsHKT1;5 in saline tolerant rice (Oryza sativa L.) landraces.	 We also report the development and validation of a new Cleavage Amplified Polymorphic Sequence (CAPS) marker (OsHKT1;5V395) that targets a codon in the sodium transporter gene OsHKT1;5 (Saltol/SKC1 locus) that is associated with sodium transport rates in the above rice landraces
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	transporter	Analysis of genetic diversity and population structure using SSR markers and validation of a Cleavage Amplified Polymorphic Sequences (CAPS) marker involving the sodium transporter OsHKT1;5 in saline tolerant rice (Oryza sativa L.) landraces.	Analysis of genetic diversity and population structure using SSR markers and validation of a Cleavage Amplified Polymorphic Sequences (CAPS) marker involving the sodium transporter OsHKT1;5 in saline tolerant rice (Oryza sativa L.) landraces.
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	transporter	Analysis of genetic diversity and population structure using SSR markers and validation of a Cleavage Amplified Polymorphic Sequences (CAPS) marker involving the sodium transporter OsHKT1;5 in saline tolerant rice (Oryza sativa L.) landraces.	 We also report the development and validation of a new Cleavage Amplified Polymorphic Sequence (CAPS) marker (OsHKT1;5V395) that targets a codon in the sodium transporter gene OsHKT1;5 (Saltol/SKC1 locus) that is associated with sodium transport rates in the above rice landraces
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	Homology Modeling Identifies Crucial Amino-Acid Residues That Confer Higher Na+ Transport Capacity of OcHKT1;5 from Oryza coarctata Roxb 	 Allelic variation in rice OsHKT1;5 sequence in specific landraces (Nona Bokra OsHKT1;5-NB/Nipponbare OsHKT1;5-Ni) correlates with variation in salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	tolerance	Homology Modeling Identifies Crucial Amino-Acid Residues That Confer Higher Na+ Transport Capacity of OcHKT1;5 from Oryza coarctata Roxb 	 Allelic variation in rice OsHKT1;5 sequence in specific landraces (Nona Bokra OsHKT1;5-NB/Nipponbare OsHKT1;5-Ni) correlates with variation in salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt tolerance	Homology Modeling Identifies Crucial Amino-Acid Residues That Confer Higher Na+ Transport Capacity of OcHKT1;5 from Oryza coarctata Roxb 	 Allelic variation in rice OsHKT1;5 sequence in specific landraces (Nona Bokra OsHKT1;5-NB/Nipponbare OsHKT1;5-Ni) correlates with variation in salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	Changes in Expression Level of OsHKT1;5 Alters Activity of Membrane Transporters Involved in K + and Ca 2+ Acquisition and Homeostasis in Salinized Rice Roots 	In rice, the OsHKT1;5 gene has been reported to be a critical determinant of salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	tolerance	Changes in Expression Level of OsHKT1;5 Alters Activity of Membrane Transporters Involved in K + and Ca 2+ Acquisition and Homeostasis in Salinized Rice Roots 	In rice, the OsHKT1;5 gene has been reported to be a critical determinant of salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt tolerance	Changes in Expression Level of OsHKT1;5 Alters Activity of Membrane Transporters Involved in K + and Ca 2+ Acquisition and Homeostasis in Salinized Rice Roots 	In rice, the OsHKT1;5 gene has been reported to be a critical determinant of salt tolerance
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	homeostasis	Changes in Expression Level of OsHKT1;5 Alters Activity of Membrane Transporters Involved in K + and Ca 2+ Acquisition and Homeostasis in Salinized Rice Roots 	Changes in Expression Level of OsHKT1;5 Alters Activity of Membrane Transporters Involved in K + and Ca 2+ Acquisition and Homeostasis in Salinized Rice Roots 
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	 Furthermore, expression analysis suggested that OsGrx_C7 acted as positive regulator of salt tolerance by reinforcing the expression of transporters (OsHKT2;1, OsHKT1;5 and OsSOS1) engaged in Na+ homeostasis in overexpressing plants
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	tolerance	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	 Furthermore, expression analysis suggested that OsGrx_C7 acted as positive regulator of salt tolerance by reinforcing the expression of transporters (OsHKT2;1, OsHKT1;5 and OsSOS1) engaged in Na+ homeostasis in overexpressing plants
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt tolerance	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	 Furthermore, expression analysis suggested that OsGrx_C7 acted as positive regulator of salt tolerance by reinforcing the expression of transporters (OsHKT2;1, OsHKT1;5 and OsSOS1) engaged in Na+ homeostasis in overexpressing plants
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	homeostasis	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice	 Furthermore, expression analysis suggested that OsGrx_C7 acted as positive regulator of salt tolerance by reinforcing the expression of transporters (OsHKT2;1, OsHKT1;5 and OsSOS1) engaged in Na+ homeostasis in overexpressing plants
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	stress	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Intriguingly, salt stress facilitates the nuclear relocation of OsDNAJ15 so that it can interact with OsBAG4, and OsDNAJ15 and OsBAG4 synergistically facilitate the DNA-binding activity of OsMYB106 to positively regulate the expression of OsHKT1;5
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Using a previously generated high-throughput activation tagging-based T-DNA insertion mutant pool, we isolated a mutant exhibiting salt stress-sensitive phenotype, caused by a reduction in OsHKT1;5 transcripts
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Intriguingly, salt stress facilitates the nuclear relocation of OsDNAJ15 so that it can interact with OsBAG4, and OsDNAJ15 and OsBAG4 synergistically facilitate the DNA-binding activity of OsMYB106 to positively regulate the expression of OsHKT1;5
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt stress	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Using a previously generated high-throughput activation tagging-based T-DNA insertion mutant pool, we isolated a mutant exhibiting salt stress-sensitive phenotype, caused by a reduction in OsHKT1;5 transcripts
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt stress	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Intriguingly, salt stress facilitates the nuclear relocation of OsDNAJ15 so that it can interact with OsBAG4, and OsDNAJ15 and OsBAG4 synergistically facilitate the DNA-binding activity of OsMYB106 to positively regulate the expression of OsHKT1;5
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	plasma membrane	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 The real-time quantitative PCR (qRT-PCR) and transcriptome analysis revealed that OsWRKY54 regulated the expression of some essential genes related to salt tolerance, such as OsNHX4 and OsHKT1;5
OsHKT1;5|SKC1|OsHKT8|OsHK1;5	Os01g0307500	LOC_Os01g20160	salt tolerance	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 The real-time quantitative PCR (qRT-PCR) and transcriptome analysis revealed that OsWRKY54 regulated the expression of some essential genes related to salt tolerance, such as OsNHX4 and OsHKT1;5
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	root	HKT2;2/1, a K(+)-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism	No-OsHKT2;2/1 is essentially expressed in roots and displays a significant level of expression at high Na(+) concentrations, in contrast to OsHKT2;1
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	The OsHKT2;1 (previously named OsHKT1) transporter from rice functions as a relatively Na+-selective transporter in heterologous expression systems, but the in vivo function of OsHKT2;1 remains unknown
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	These analyses demonstrate that Na+ can enhance growth of rice under K+ starvation conditions, and that OsHKT2;1 is the central transporter for nutritional Na+ uptake into K+-starved rice roots
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	root	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells	In addition, the presence of external K(+) and Ca(2+) down-regulated OsHKT2;1-mediated Na(+) influx in two plant systems, Bright-Yellow 2 cells and intact rice roots, and also in Xenopus oocytes
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	root	Sodium transport and HKT transporters: the rice model	In roots, the expressions were much lower than in shoots, except for OsHKT4 and OsHKT1 in K+-starved plants
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	root	Sodium transport and HKT transporters: the rice model	We propose that OsHKT transporters are involved in Na+ movements in rice, and that OsHKT1 specifically mediates Na+ uptake in rice roots when the plants are K+ deficient
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Sodium transport and HKT transporters: the rice model	Yeast expressions of OsHKT1 and OsHKT4 proved that they are Na+ transporters of high and low affinity, respectively, which are sensitive to K+ and Ba2+
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Sodium transport and HKT transporters: the rice model	Parallel experiments of K+ and Na+ uptake in yeast expressing the wheat or rice HKT1 transporters proved that they were very different; TaHKT1 transported K+ and Na+, and OsHKT1 only Na+
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Sodium transport and HKT transporters: the rice model	We propose that OsHKT transporters are involved in Na+ movements in rice, and that OsHKT1 specifically mediates Na+ uptake in rice roots when the plants are K+ deficient
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars	Upon NaCl stress, the OsHKT1 transcript was significantly down-regulated in salt-tolerant cv
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars	Pokkali regulates the expression of OsHKT1, OsHKT2, and OsVHA differently from how the salt-sensitive cv
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	root	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	OsHKT2;1 was mainly expressed in the cortex and endodermis of roots
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	root	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	(22)Na+ tracer influx experiments revealed that Na+ influx into oshkt2;1-null roots was dramatically reduced compared with wild-type plants
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	root	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	These analyses demonstrate that Na+ can enhance growth of rice under K+ starvation conditions, and that OsHKT2;1 is the central transporter for nutritional Na+ uptake into K+-starved rice roots
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	root	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells	Therefore, here we analyze two highly homologous rice (Oryza sativa) HKT transporters in plant cells, OsHKT2;1 and OsHKT2;2, that show differential K(+) permeabilities in heterologous systems
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt	HKT2;2/1, a K(+)-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism	We have investigated OsHKT2;1 natural variation in a collection of 49 cultivars with different levels of salt tolerance and geographical origins
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	potassium	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars	The OsHKT1, OsHKT2, and OsVHA transporter genes might play important roles in maintaining cytosolic Na(+) homeostasis in rice (Oryza sativa L
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	homeostasis	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars	The OsHKT1, OsHKT2, and OsVHA transporter genes might play important roles in maintaining cytosolic Na(+) homeostasis in rice (Oryza sativa L
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	growth	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	Interestingly, three independent oshkt2;1-null alleles exhibited significantly reduced growth compared with wild-type plants under low Na+ and K+ starvation conditions
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	growth	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	These analyses demonstrate that Na+ can enhance growth of rice under K+ starvation conditions, and that OsHKT2;1 is the central transporter for nutritional Na+ uptake into K+-starved rice roots
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	growth	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+ -starved roots for growth
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	shoot	Sodium transport and HKT transporters: the rice model	In roots, the expressions were much lower than in shoots, except for OsHKT4 and OsHKT1 in K+-starved plants
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt tolerance	HKT2;2/1, a K(+)-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism	We have investigated OsHKT2;1 natural variation in a collection of 49 cultivars with different levels of salt tolerance and geographical origins
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	shoot	A role for the OsHKT 2;1 sodium transporter in potassium use efficiency in rice.	 Of these, the sodium transporter gene OsHKT2;1 emerged as a key factor that impacts on KUE based on (i) the correlation between shoot Na+ and KUE, and (ii) higher levels of HKT2;1 expression in high KUE lines
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	A role for the OsHKT 2;1 sodium transporter in potassium use efficiency in rice.	 Of these, the sodium transporter gene OsHKT2;1 emerged as a key factor that impacts on KUE based on (i) the correlation between shoot Na+ and KUE, and (ii) higher levels of HKT2;1 expression in high KUE lines
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	seedlings	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	growth	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	 The aim of this investigation was to determine the OsNHX1 (a vacuolar Na+/H+ exchanger) and OsHKT2;1 (Na+/K+ transporter) regulation by salt stress (200<U+00A0>mM NaCl) in two rice cultivars, i
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	 Pokkali (15<U+00A0>min after salt stress) due to the higher expression of OsHKT2;1 gene (by 2
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt stress	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt stress	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	 The aim of this investigation was to determine the OsNHX1 (a vacuolar Na+/H+ exchanger) and OsHKT2;1 (Na+/K+ transporter) regulation by salt stress (200<U+00A0>mM NaCl) in two rice cultivars, i
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt stress	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	 Pokkali (15<U+00A0>min after salt stress) due to the higher expression of OsHKT2;1 gene (by 2
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	stress	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	 The aim of this investigation was to determine the OsNHX1 (a vacuolar Na+/H+ exchanger) and OsHKT2;1 (Na+/K+ transporter) regulation by salt stress (200<U+00A0>mM NaCl) in two rice cultivars, i
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	transporter	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	Expression levels of the Na+/K+ transporter OsHKT2;1 and vacuolar Na+/H+ exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt	Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis	 Correspondingly, null mutants of OsHKT2;1 displayed an increased tolerance to salt stress
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	tolerance	Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis	 Correspondingly, null mutants of OsHKT2;1 displayed an increased tolerance to salt stress
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt stress	Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis	 Correspondingly, null mutants of OsHKT2;1 displayed an increased tolerance to salt stress
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	stress	Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis	 Correspondingly, null mutants of OsHKT2;1 displayed an increased tolerance to salt stress
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	stress	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Under salt stress treatment, the expression levels of OsbZIP05, OsHKT1;1 and OsDREB1B were significantly lower yet the level of OsHKT2;1 was significantly higher in oswrky28 mutants than those in wide type plants
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Under salt stress treatment, the expression levels of OsbZIP05, OsHKT1;1 and OsDREB1B were significantly lower yet the level of OsHKT2;1 was significantly higher in oswrky28 mutants than those in wide type plants
OsHKT2;1|OsHKT1	Os06g0701700	LOC_Os06g48810	salt stress	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	 Under salt stress treatment, the expression levels of OsbZIP05, OsHKT1;1 and OsDREB1B were significantly lower yet the level of OsHKT2;1 was significantly higher in oswrky28 mutants than those in wide type plants
OsHKT2;2	None	None	potassium	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells
OsHKT2;2	None	None	transporter	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells	Therefore, here we analyze two highly homologous rice (Oryza sativa) HKT transporters in plant cells, OsHKT2;1 and OsHKT2;2, that show differential K(+) permeabilities in heterologous systems
OsHKT2;2	None	None	transporter	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells
OsHKT2;2	None	None	salt tolerance	HKT2;2/1, a K(+)-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism	Our results suggest that No-OsHKT2;2/1 can contribute to Nona Bokra salt tolerance by enabling root K(+) uptake under saline conditions
OsHKT2;2	None	None	salt	HKT2;2/1, a K(+)-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism	Our study, however, also identified a new HKT isoform, No-OsHKT2;2/1 in Nona Bokra, a highly salt-tolerant cultivar
OsHKT2;2	None	None	salt	HKT2;2/1, a K(+)-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism	Its 5' region corresponds to that of OsHKT2;2, whose full-length sequence is not present in Nipponbare but has been identified in Pokkali, a salt-tolerant rice cultivar
OsHKT2;2	None	None	salt	HKT2;2/1, a K(+)-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism	Our results suggest that No-OsHKT2;2/1 can contribute to Nona Bokra salt tolerance by enabling root K(+) uptake under saline conditions
OsHKT2;2	None	None	root	HKT2;2/1, a K(+)-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism	No-OsHKT2;2/1 is essentially expressed in roots and displays a significant level of expression at high Na(+) concentrations, in contrast to OsHKT2;1
OsHKT2;2	None	None	root	HKT2;2/1, a K(+)-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism	Our results suggest that No-OsHKT2;2/1 can contribute to Nona Bokra salt tolerance by enabling root K(+) uptake under saline conditions
OsHKT2;4	Os06g0701600	LOC_Os06g48800	growth	K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions	OsHKT2;4 rescued the growth defect of a K(+) uptake-deficient yeast mutant
OsHKT2;4	Os06g0701600	LOC_Os06g48800	root	A rice high-affinity potassium transporter (HKT) conceals a calcium-permeable cation channel	The HKT rice gene, named OsHKT2;4, is expressed in several cell types, including root hairs and vascular parenchyma cells
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions	The genetically tractable rice (Oryza sativa; background Nipponbare) possesses two predicted K(+)-transporting class II HKT transporter genes, OsHKT2;3 and OsHKT2;4
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions	In this study, we have characterized the ion selectivity of the class II rice HKT transporter OsHKT2;4 in yeast and Xenopus laevis oocytes
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions	Interestingly, however, K(+) influx in OsHKT2;4-expressing oocytes did not require stimulation by extracellular Na(+), in contrast to other class II HKT transporters
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions	Comparative analyses of Ca(2+) and Mg(2+) permeabilities in several HKT transporters, including Arabidopsis thaliana HKT1;1 (AtHKT1;1), Triticum aestivum HKT2;1 (TaHKT2;1), OsHKT2;1, OsHKT2;2, and OsHKT2;4, revealed that only OsHKT2;4 and to a lesser degree TaHKT2;1 mediate Mg(2+) transport
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions	Interestingly, cation competition analyses demonstrate that the selectivity of both of these class II HKT transporters for K(+) is dominant over divalent cations, suggesting that Mg(2+) and Ca(2+) transport via OsHKT2;4 may be small and would depend on competing K(+) concentrations in plants
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions	K+ transport by the OsHKT2;4 transporter from rice with atypical Na+ transport properties and competition in permeation of K+ over Mg2+ and Ca2+ ions
OsHKT2;4	Os06g0701600	LOC_Os06g48800	root hair	A rice high-affinity potassium transporter (HKT) conceals a calcium-permeable cation channel	The HKT rice gene, named OsHKT2;4, is expressed in several cell types, including root hairs and vascular parenchyma cells
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	The rice monovalent cation transporter OsHKT2;4: revisited ionic selectivity	Surprisingly, a subfamily 2 member from rice (Oryza sativa), OsHKT2;4, has been proposed to form cation/K(+) channels or transporters permeable to Ca(2+) when expressed in Xenopus oocytes
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	The rice monovalent cation transporter OsHKT2;4: revisited ionic selectivity	Further analyses in media containing both Na(+) and K(+) indicated that OsHKT2;4 functions as K(+)-selective transporter at low external Na(+), but transports also Na(+) at high (>10 mm) Na(+) concentrations
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	The rice monovalent cation transporter OsHKT2;4: revisited ionic selectivity	These data identify OsHKT2;4 as a new functional type in the K(+) and Na(+)-permeable HKT transporter subfamily
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	The rice monovalent cation transporter OsHKT2;4: revisited ionic selectivity	The rice monovalent cation transporter OsHKT2;4: revisited ionic selectivity
OsHKT2;4	Os06g0701600	LOC_Os06g48800	growth	The Rice High-Affinity K(+) Transporter OsHKT2;4 Mediates Mg(2+) Homeostasis under High-Mg(2+) Conditions in Transgenic Arabidopsis.	laevis oocytes, we found that OsHKT2;4 could rescue the growth of MM281 in Mg(2+)-deficient conditions and induced the Mg(2+) currents in oocytes at millimolar range of Mg(2+)
OsHKT2;4	Os06g0701600	LOC_Os06g48800	homeostasis	The Rice High-Affinity K(+) Transporter OsHKT2;4 Mediates Mg(2+) Homeostasis under High-Mg(2+) Conditions in Transgenic Arabidopsis.	The Rice High-Affinity K(+) Transporter OsHKT2;4 Mediates Mg(2+) Homeostasis under High-Mg(2+) Conditions in Transgenic Arabidopsis.
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	The Rice High-Affinity K(+) Transporter OsHKT2;4 Mediates Mg(2+) Homeostasis under High-Mg(2+) Conditions in Transgenic Arabidopsis.	The Rice High-Affinity K(+) Transporter OsHKT2;4 Mediates Mg(2+) Homeostasis under High-Mg(2+) Conditions in Transgenic Arabidopsis.
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	The Rice High-Affinity K(+) Transporter OsHKT2;4 Mediates Mg(2+) Homeostasis under High-Mg(2+) Conditions in Transgenic Arabidopsis.	Additionally, overexpression of OsHKT2;4 to Arabidopsis mutant lines with a knockout of AtMGT6, a gene encoding the transporter protein necessary for Mg(2+) adaptation in Arabidopsis, caused the Mg(2+) toxicity to the leaves under the high-Mg(2+) stress, but not under low-Mg(2+) environments
OsHKT2;4	Os06g0701600	LOC_Os06g48800	transporter	The Rice High-Affinity K(+) Transporter OsHKT2;4 Mediates Mg(2+) Homeostasis under High-Mg(2+) Conditions in Transgenic Arabidopsis.	Together, our results demonstrated that OsHKT2;4 is a low-affinity Mg(2+) transporter responsible for Mg(2+) transport to aerials in plants under high-Mg(2+) conditions
OsHKT2;4	Os06g0701600	LOC_Os06g48800	R protein	The Rice High-Affinity K(+) Transporter OsHKT2;4 Mediates Mg(2+) Homeostasis under High-Mg(2+) Conditions in Transgenic Arabidopsis.	Additionally, overexpression of OsHKT2;4 to Arabidopsis mutant lines with a knockout of AtMGT6, a gene encoding the transporter protein necessary for Mg(2+) adaptation in Arabidopsis, caused the Mg(2+) toxicity to the leaves under the high-Mg(2+) stress, but not under low-Mg(2+) environments
OsHLH61	Os07g0676600	LOC_Os07g47960	salicylic acid	OsHLH61-OsbHLH96 influences rice defense to brown planthopper through regulating the pathogen-related genes.	RNA-seq analysis revealed that some pathogen-related (PR) genes in the Salicylic acid (SA) signaling pathway that mediate plant immunity were obviously down-regulated in the OsHLH61 RNAi plants
OsHLH61	Os07g0676600	LOC_Os07g47960	immunity	OsHLH61-OsbHLH96 influences rice defense to brown planthopper through regulating the pathogen-related genes.	RNA-seq analysis revealed that some pathogen-related (PR) genes in the Salicylic acid (SA) signaling pathway that mediate plant immunity were obviously down-regulated in the OsHLH61 RNAi plants
OsHLP1	Os11g0156600	LOC_Os11g05800	transcription factor	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 interacts with the NAC (NAM, ATAF, and CUC) transcription factor OsNTL6 at the ER
OsHLP1	Os11g0156600	LOC_Os11g05800	resistance	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 Overexpression of OsHLP1 significantly enhances blast disease resistance but impairs ER morphology in rice (Oryza sativa), resulting in enhanced sensitivity to ER stress
OsHLP1	Os11g0156600	LOC_Os11g05800	resistance	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsHLP1	Os11g0156600	LOC_Os11g05800	resistance	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 These findings unravel a mechanism whereby OsHLP1 promotes disease resistance by compromising ER homeostasis when plants are infected by pathogens
OsHLP1	Os11g0156600	LOC_Os11g05800	disease	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 Overexpression of OsHLP1 significantly enhances blast disease resistance but impairs ER morphology in rice (Oryza sativa), resulting in enhanced sensitivity to ER stress
OsHLP1	Os11g0156600	LOC_Os11g05800	disease	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsHLP1	Os11g0156600	LOC_Os11g05800	disease	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 These findings unravel a mechanism whereby OsHLP1 promotes disease resistance by compromising ER homeostasis when plants are infected by pathogens
OsHLP1	Os11g0156600	LOC_Os11g05800	disease resistance	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 Overexpression of OsHLP1 significantly enhances blast disease resistance but impairs ER morphology in rice (Oryza sativa), resulting in enhanced sensitivity to ER stress
OsHLP1	Os11g0156600	LOC_Os11g05800	disease resistance	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsHLP1	Os11g0156600	LOC_Os11g05800	disease resistance	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 These findings unravel a mechanism whereby OsHLP1 promotes disease resistance by compromising ER homeostasis when plants are infected by pathogens
OsHLP1	Os11g0156600	LOC_Os11g05800	blast	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 Overexpression of OsHLP1 significantly enhances blast disease resistance but impairs ER morphology in rice (Oryza sativa), resulting in enhanced sensitivity to ER stress
OsHLP1	Os11g0156600	LOC_Os11g05800	stress	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 Overexpression of OsHLP1 significantly enhances blast disease resistance but impairs ER morphology in rice (Oryza sativa), resulting in enhanced sensitivity to ER stress
OsHLP1	Os11g0156600	LOC_Os11g05800	stress	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsHLP1	Os11g0156600	LOC_Os11g05800	magnaporthe oryzae	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 Here we find that transcription of an HVA22 family gene, OsHLP1 (HVA22-like protein 1), is induced by Magnaporthe oryzae infection
OsHLP1	Os11g0156600	LOC_Os11g05800	homeostasis	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 These findings unravel a mechanism whereby OsHLP1 promotes disease resistance by compromising ER homeostasis when plants are infected by pathogens
OsHLP1	Os11g0156600	LOC_Os11g05800	blast disease	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 Overexpression of OsHLP1 significantly enhances blast disease resistance but impairs ER morphology in rice (Oryza sativa), resulting in enhanced sensitivity to ER stress
OsHLP1	Os11g0156600	LOC_Os11g05800	ER stress	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 Overexpression of OsHLP1 significantly enhances blast disease resistance but impairs ER morphology in rice (Oryza sativa), resulting in enhanced sensitivity to ER stress
OsHLP1	Os11g0156600	LOC_Os11g05800	ER stress	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsHLS1	Os02g0104200	LOC_Os02g01360	senescence	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	In this study, we identified a gene related to plant height, leaf, and premature senescence in rice, and named it OsHLS1
OsHLS1	Os02g0104200	LOC_Os02g01360	development	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).
OsHLS1	Os02g0104200	LOC_Os02g01360	development	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 OsHLS1 affected the expression levels of genes involved in the GA metabolic pathway and affected the content of active GA, thereby regulating plant height development in rice
OsHLS1	Os02g0104200	LOC_Os02g01360	development	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 In conclusion, we suggest that OsHLS1 regulates plant height and development by controlling the accumulation of active gibberellins in rice
OsHLS1	Os02g0104200	LOC_Os02g01360	nucleus	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 Subcellular localization showed that OsHLS1 was located in the nucleus
OsHLS1	Os02g0104200	LOC_Os02g01360	gibberellin	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).
OsHLS1	Os02g0104200	LOC_Os02g01360	gibberellin	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 Expression of OsHLS1 was significantly brought about by gibberellin (GA)
OsHLS1	Os02g0104200	LOC_Os02g01360	ga	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 OsHLS1 affected the expression levels of genes involved in the GA metabolic pathway and affected the content of active GA, thereby regulating plant height development in rice
OsHLS1	Os02g0104200	LOC_Os02g01360	height	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).
OsHLS1	Os02g0104200	LOC_Os02g01360	height	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 OsHLS1 affected the expression levels of genes involved in the GA metabolic pathway and affected the content of active GA, thereby regulating plant height development in rice
OsHLS1	Os02g0104200	LOC_Os02g01360	height	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 In conclusion, we suggest that OsHLS1 regulates plant height and development by controlling the accumulation of active gibberellins in rice
OsHLS1	Os02g0104200	LOC_Os02g01360	plant height	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).
OsHLS1	Os02g0104200	LOC_Os02g01360	plant height	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	In this study, we identified a gene related to plant height, leaf, and premature senescence in rice, and named it OsHLS1
OsHLS1	Os02g0104200	LOC_Os02g01360	plant height	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 OsHLS1 affected the expression levels of genes involved in the GA metabolic pathway and affected the content of active GA, thereby regulating plant height development in rice
OsHLS1	Os02g0104200	LOC_Os02g01360	plant height	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 In conclusion, we suggest that OsHLS1 regulates plant height and development by controlling the accumulation of active gibberellins in rice
OsHLS1	Os02g0104200	LOC_Os02g01360	Gibberellin	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).
OsHLS1	Os02g0104200	LOC_Os02g01360	Gibberellin	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 Expression of OsHLS1 was significantly brought about by gibberellin (GA)
OsHLS1	Os02g0104200	LOC_Os02g01360	GA	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 OsHLS1 affected the expression levels of genes involved in the GA metabolic pathway and affected the content of active GA, thereby regulating plant height development in rice
OsHLS1	Os02g0104200	LOC_Os02g01360	 ga 	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	 OsHLS1 affected the expression levels of genes involved in the GA metabolic pathway and affected the content of active GA, thereby regulating plant height development in rice
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	root	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	OsHMA2 was mainly expressed in the mature zone of the roots at the vegetative stage, but higher expression was also found in the nodes at the reproductive stage
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	root	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	OsHMA2 was localized at the pericycle of the roots and at the phloem of enlarged and diffuse vascular bundles in the nodes
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	transporter	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium	The translocation ratios of zinc (Zn) and Cd were clearly lower in all mutants than in the wild type, suggesting that OsHMA2 is a major transporter of Zn and Cd from roots to shoots
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	vegetative	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	OsHMA2 was mainly expressed in the mature zone of the roots at the vegetative stage, but higher expression was also found in the nodes at the reproductive stage
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	xylem	Cadmium retention in rice roots is influenced by cadmium availability, chelation and translocation	In silico search and preliminary analyses in yeast suggest OsHMA2 as a good candidate for the control of Cd xylem loading in rice
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	cadmium	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	Heterologous expression of OsHMA2 in yeast (Saccharomyces cerevisiae) showed influx transport activity for zinc as well as cadmium
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	cadmium	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	Taken together, OsHMA2 in the nodes plays an important role in preferential distribution of zinc as well as cadmium through the phloem to the developing tissues
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	growth	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	The yeast expressing OsHMA2 was able to reverse the growth defect in the presence of excess Zn
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	reproductive	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	OsHMA2 was mainly expressed in the mature zone of the roots at the vegetative stage, but higher expression was also found in the nodes at the reproductive stage
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	root	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium	The translocation ratios of zinc (Zn) and Cd were clearly lower in all mutants than in the wild type, suggesting that OsHMA2 is a major transporter of Zn and Cd from roots to shoots
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	xylem	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	These results suggest that OsHMA2 plays a role in Zn and Cd loading to the xylem and participates in root-to-shoot translocation of these metals in rice
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	transporter	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	Here we investigated the role of the Zn/Cd transporter OsHMA2
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	transporter	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	zinc	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium	The translocation ratios of zinc (Zn) and Cd were clearly lower in all mutants than in the wild type, suggesting that OsHMA2 is a major transporter of Zn and Cd from roots to shoots
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	zinc	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	root	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	The expression of OsHMA2 in rice was observed mainly in the roots where OsHMA2 transcripts were abundant in vascular bundles
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	root	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	Furthermore, Zn and Cd concentrations of OsHMA2-suppressed rice decreased in the leaves, while the Zn concentration increased in the roots compared with the wild type (WT)
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	root	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	These results suggest that OsHMA2 plays a role in Zn and Cd loading to the xylem and participates in root-to-shoot translocation of these metals in rice
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	root	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	zinc	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	Here, we report that rice (Oryza sativa) heavy metal ATPase2 (OsHMA2), a member of P-type ATPases, is involved in preferential delivery of zinc to the developing tissues in rice
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	zinc	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	Heterologous expression of OsHMA2 in yeast (Saccharomyces cerevisiae) showed influx transport activity for zinc as well as cadmium
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	zinc	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	Taken together, OsHMA2 in the nodes plays an important role in preferential distribution of zinc as well as cadmium through the phloem to the developing tissues
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	zinc	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	cadmium	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	vascular bundle	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	The expression of OsHMA2 in rice was observed mainly in the roots where OsHMA2 transcripts were abundant in vascular bundles
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	vascular bundle	Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2	OsHMA2 was localized at the pericycle of the roots and at the phloem of enlarged and diffuse vascular bundles in the nodes
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	grain	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	Furthermore, the Cd concentration in the grains of OsHMA2-overexpressing rice as well as in OsSUT1-promoter OsHMA2 rice decreased to about half that of the WT, although the other metal concentrations were the same as in the WT
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	shoot	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium	The translocation ratios of zinc (Zn) and Cd were clearly lower in all mutants than in the wild type, suggesting that OsHMA2 is a major transporter of Zn and Cd from roots to shoots
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	shoot	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium	By comparing each allele in the OsHMA2 protein structure and measuring the Cd translocation ratio, we identified the C-terminal region as essential for Cd translocation into shoots
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	shoot	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	These results suggest that OsHMA2 plays a role in Zn and Cd loading to the xylem and participates in root-to-shoot translocation of these metals in rice
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	shoot	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	grain	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	grain	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	These results indicate that expression of OsHMA3 under the control of OsHMA2 promoter can effectively reduce Cd accumulation in rice grain through sequestering more Cd into the vacuoles of various tissues
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	transporter	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	The aim of this study is to manipulate both expression and tissue localization of OsHMA3, a tonoplast-localized Cd transporter in the roots by expressing it under the control of OsHMA2 promoter, which shows high expression in different organs including roots, nodes and shoots
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	cadmium	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	root	Analysis of Cadmium Root Retention for Two Contrasting Rice Accessions Suggests an Important Role for OsHMA2	Analysis of Cadmium Root Retention for Two Contrasting Rice Accessions Suggests an Important Role for OsHMA2
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	transporter	Analysis of Cadmium Root Retention for Two Contrasting Rice Accessions Suggests an Important Role for OsHMA2	Interestingly, the relative transcript abundance of OsHMA2, a gene controlling root-to-shoot Cd/Zn translocation, was not influenced by Cd exposure in Capataz and progressively increased in Beirao with the external Cd concentration, suggesting that activity of the OsHMA2 transporter may differentially limit root-to-shoot Cd/Zn translocation in Capataz and Beirao
OsHMA2|OsHMA2v	Os06g0700700	LOC_Os06g48720	cadmium	Analysis of Cadmium Root Retention for Two Contrasting Rice Accessions Suggests an Important Role for OsHMA2	Analysis of Cadmium Root Retention for Two Contrasting Rice Accessions Suggests an Important Role for OsHMA2
OsHMA4	Os02g0196600	LOC_Os02g10290	root	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	We provide evidence that OsHMA4 functions to sequester Cu into root vacuoles, limiting Cu accumulation in the grain
OsHMA4	Os02g0196600	LOC_Os02g10290	grain	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	Here we identify OsHMA4 as the likely causal gene of a quantitative trait locus controlling Cu accumulation in rice grain
OsHMA4	Os02g0196600	LOC_Os02g10290	grain	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	We provide evidence that OsHMA4 functions to sequester Cu into root vacuoles, limiting Cu accumulation in the grain
OsHMA4	Os02g0196600	LOC_Os02g10290	grain	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	The difference in grain Cu accumulation is most likely attributed to a single amino acid substitution that leads to different OsHMA4 transport activity
OsHMA4	Os02g0196600	LOC_Os02g10290	grain	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	Identification of natural allelic variation in OsHMA4 may facilitate the development of rice varieties with grain Cu concentrations tuned to both the concentration of Cu in the soil and dietary needs
OsHMA4	Os02g0196600	LOC_Os02g10290	development	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	Identification of natural allelic variation in OsHMA4 may facilitate the development of rice varieties with grain Cu concentrations tuned to both the concentration of Cu in the soil and dietary needs
OsHMA4	Os02g0196600	LOC_Os02g10290	ATPase	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.
OsHMA4	Os02g0196600	LOC_Os02g10290	copper	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.
OsHMA5	Os04g0556000	LOC_Os04g46940	root	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	Knockout of OsHMA5 resulted in a decreased copper (Cu) concentration in the shoots but an increased Cu concentration in the roots at the vegetative stage
OsHMA5	Os04g0556000	LOC_Os04g46940	root	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	OsHMA5 was mainly expressed in the roots at the vegetative stage but also in nodes, peduncle, rachis, and husk at the reproductive stage
OsHMA5	Os04g0556000	LOC_Os04g46940	root	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	Analysis of the transgenic rice carrying the OsHMA5 promoter fused with green fluorescent protein revealed that it was localized at the root pericycle cells and xylem region of diffuse vascular bundles in node I, vascular tissues of peduncle, rachis, and husk
OsHMA5	Os04g0556000	LOC_Os04g46940	root	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	Taken together, OsHMA5 is involved in loading Cu to the xylem of the roots and other organs
OsHMA5	Os04g0556000	LOC_Os04g46940	reproductive	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	OsHMA5 was mainly expressed in the roots at the vegetative stage but also in nodes, peduncle, rachis, and husk at the reproductive stage
OsHMA5	Os04g0556000	LOC_Os04g46940	xylem	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	Analysis of the transgenic rice carrying the OsHMA5 promoter fused with green fluorescent protein revealed that it was localized at the root pericycle cells and xylem region of diffuse vascular bundles in node I, vascular tissues of peduncle, rachis, and husk
OsHMA5	Os04g0556000	LOC_Os04g46940	xylem	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	Taken together, OsHMA5 is involved in loading Cu to the xylem of the roots and other organs
OsHMA5	Os04g0556000	LOC_Os04g46940	xylem	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice
OsHMA5	Os04g0556000	LOC_Os04g46940	shoot	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	Knockout of OsHMA5 resulted in a decreased copper (Cu) concentration in the shoots but an increased Cu concentration in the roots at the vegetative stage
OsHMA5	Os04g0556000	LOC_Os04g46940	growth	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	Expression of OsHMA5 in a Cu transport-defective mutant yeast (Saccharomyces cerevisiae) strain restored the growth
OsHMA5	Os04g0556000	LOC_Os04g46940	vascular bundle	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	Analysis of the transgenic rice carrying the OsHMA5 promoter fused with green fluorescent protein revealed that it was localized at the root pericycle cells and xylem region of diffuse vascular bundles in node I, vascular tissues of peduncle, rachis, and husk
OsHMA5	Os04g0556000	LOC_Os04g46940	vegetative	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	Knockout of OsHMA5 resulted in a decreased copper (Cu) concentration in the shoots but an increased Cu concentration in the roots at the vegetative stage
OsHMA5	Os04g0556000	LOC_Os04g46940	vegetative	A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice	OsHMA5 was mainly expressed in the roots at the vegetative stage but also in nodes, peduncle, rachis, and husk at the reproductive stage
OsHMA5	Os04g0556000	LOC_Os04g46940	transporter	The copper economy response is partially conserved in rice (Oryza sativa L.)	 Rice OsHMA5 is a Cu xylem-loading transporter involved in Cu translocation from roots to shoots, as suggested by the analysis of oshma5 mutant plants
OsHMA5	Os04g0556000	LOC_Os04g46940	copper accumulation	The key micronutrient copper orchestrates broad-spectrum virus resistance in rice	Loss-of-function mutations in HMA5, COPT1, and COPT5 caused a significant reduction in copper accumulation and plant viral resistance because of the increased SPL9-mediated miR528 transcription.
OsHMA5	Os04g0556000	LOC_Os04g46940	viral resistance	The key micronutrient copper orchestrates broad-spectrum virus resistance in rice	Loss-of-function mutations in HMA5, COPT1, and COPT5 caused a significant reduction in copper accumulation and plant viral resistance because of the increased SPL9-mediated miR528 transcription.
OsHMA7	Os07g0623200	LOC_Os07g43040	panicle	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Knocking down expression of OsHMA7 by RNAi silencing of endogenous gene resulted in plants with altered domestication traits such as plant height, tiller number, panicle size and architecture, grain color, shape, size, grain shattering, heading date and increased sensitivity to Fe and Zn deficiency
OsHMA7	Os07g0623200	LOC_Os07g43040	grain	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	We identified two alleles 261 and 284 of a Gramineae-specific heavy metal transporter gene OsHMA7 by analyzing expression patterns and sequences of genes within QTLs for high Fe &amp; Zn, in Madhukar x Swarna recombinant inbred lines (RILs) with high (HL) or low (LL) grain Fe &amp; Zn
OsHMA7	Os07g0623200	LOC_Os07g43040	grain	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Knocking down expression of OsHMA7 by RNAi silencing of endogenous gene resulted in plants with altered domestication traits such as plant height, tiller number, panicle size and architecture, grain color, shape, size, grain shattering, heading date and increased sensitivity to Fe and Zn deficiency
OsHMA7	Os07g0623200	LOC_Os07g43040	tiller	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Knocking down expression of OsHMA7 by RNAi silencing of endogenous gene resulted in plants with altered domestication traits such as plant height, tiller number, panicle size and architecture, grain color, shape, size, grain shattering, heading date and increased sensitivity to Fe and Zn deficiency
OsHMA7	Os07g0623200	LOC_Os07g43040	domestication	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Knocking down expression of OsHMA7 by RNAi silencing of endogenous gene resulted in plants with altered domestication traits such as plant height, tiller number, panicle size and architecture, grain color, shape, size, grain shattering, heading date and increased sensitivity to Fe and Zn deficiency
OsHMA7	Os07g0623200	LOC_Os07g43040	homeostasis	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Altered expression of OsHMA7 influenced transcript levels of iron-responsive genes indicating cellular Fe-Zn homeostasis and also several domestication-related genes in rice
OsHMA7	Os07g0623200	LOC_Os07g43040	transporter	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	We identified two alleles 261 and 284 of a Gramineae-specific heavy metal transporter gene OsHMA7 by analyzing expression patterns and sequences of genes within QTLs for high Fe &amp; Zn, in Madhukar x Swarna recombinant inbred lines (RILs) with high (HL) or low (LL) grain Fe &amp; Zn
OsHMA7	Os07g0623200	LOC_Os07g43040	heading date	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Knocking down expression of OsHMA7 by RNAi silencing of endogenous gene resulted in plants with altered domestication traits such as plant height, tiller number, panicle size and architecture, grain color, shape, size, grain shattering, heading date and increased sensitivity to Fe and Zn deficiency
OsHMA7	Os07g0623200	LOC_Os07g43040	plant height	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Knocking down expression of OsHMA7 by RNAi silencing of endogenous gene resulted in plants with altered domestication traits such as plant height, tiller number, panicle size and architecture, grain color, shape, size, grain shattering, heading date and increased sensitivity to Fe and Zn deficiency
OsHMA7	Os07g0623200	LOC_Os07g43040	panicle size	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Knocking down expression of OsHMA7 by RNAi silencing of endogenous gene resulted in plants with altered domestication traits such as plant height, tiller number, panicle size and architecture, grain color, shape, size, grain shattering, heading date and increased sensitivity to Fe and Zn deficiency
OsHMA7	Os07g0623200	LOC_Os07g43040	tiller number	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Knocking down expression of OsHMA7 by RNAi silencing of endogenous gene resulted in plants with altered domestication traits such as plant height, tiller number, panicle size and architecture, grain color, shape, size, grain shattering, heading date and increased sensitivity to Fe and Zn deficiency
OsHMA9	Os06g0665800	LOC_Os06g45500	cadmium	Rice P1B-type heavy-metal ATPase, OsHMA9, is a metal efflux protein	Semiquantitative reverse transcription-polymerase chain reaction analyses of seedlings showed that OsHMA9 expression was induced by a high concentration of copper (Cu), zinc (Zn), and cadmium
OsHMA9	Os06g0665800	LOC_Os06g45500	zinc	Rice P1B-type heavy-metal ATPase, OsHMA9, is a metal efflux protein	Semiquantitative reverse transcription-polymerase chain reaction analyses of seedlings showed that OsHMA9 expression was induced by a high concentration of copper (Cu), zinc (Zn), and cadmium
OsHMA9	Os06g0665800	LOC_Os06g45500	seedling	Rice P1B-type heavy-metal ATPase, OsHMA9, is a metal efflux protein	Semiquantitative reverse transcription-polymerase chain reaction analyses of seedlings showed that OsHMA9 expression was induced by a high concentration of copper (Cu), zinc (Zn), and cadmium
OsHMGB707	Os04g0564600	LOC_Os04g47690	drought	Overexpression of OsHMGB707, a High Mobility Group Protein, Enhances Rice Drought Tolerance by Promoting Stress-Related Gene Expression	In summary, OsHMGB707 encodes a stress-responsive high mobility group protein and regulates rice drought tolerance by promoting the expression of stress-related genes
OsHMGB707	Os04g0564600	LOC_Os04g47690	salt	Overexpression of OsHMGB707, a High Mobility Group Protein, Enhances Rice Drought Tolerance by Promoting Stress-Related Gene Expression	The expression of OsHMGB707 was up-regulated by dehydration and high salt treatment
OsHMGB707	Os04g0564600	LOC_Os04g47690	tolerance	Overexpression of OsHMGB707, a High Mobility Group Protein, Enhances Rice Drought Tolerance by Promoting Stress-Related Gene Expression	In summary, OsHMGB707 encodes a stress-responsive high mobility group protein and regulates rice drought tolerance by promoting the expression of stress-related genes
OsHMGB707	Os04g0564600	LOC_Os04g47690	drought tolerance	Overexpression of OsHMGB707, a High Mobility Group Protein, Enhances Rice Drought Tolerance by Promoting Stress-Related Gene Expression	In summary, OsHMGB707 encodes a stress-responsive high mobility group protein and regulates rice drought tolerance by promoting the expression of stress-related genes
OsHO2|HO2|OsYLC2	Os03g0395000	LOC_Os03g27770	tetrapyrrole biosynthesis	Young Leaf Chlorosis 2 encodes the stroma-localized heme oxygenase 2 which is required for normal tetrapyrrole biosynthesis in rice	Young Leaf Chlorosis 2 encodes the stroma-localized heme oxygenase 2 which is required for normal tetrapyrrole biosynthesis in rice
OsHO2|HO2|OsYLC2	Os03g0395000	LOC_Os03g27770	stroma	Young Leaf Chlorosis 2 encodes the stroma-localized heme oxygenase 2 which is required for normal tetrapyrrole biosynthesis in rice	Subcellular localization and chloroplast fractionation experiments indicated that OsHO2 resides in the stroma.
OsHOP2	Os03g0710100	LOC_Os03g50220|LOC_Os03g50230	homologous recombination	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	In addition, a yeast two-hybrid (Y2H) and pull-down assay showed that OsMFS1 could physically interact with OsHOP2 protein to form a stable complex to ensure faithful homologous recombination
OsHORZ1	Os01g0861700	LOC_Os01g64250	Fe efficiency	Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation.	These results indicate that both OsHRZ1 and OsHRZ2 negatively regulate Fe efficiency and accumulation, whereas OsHORZ1 may have the opposite effect.
OsHORZ1	Os01g0861700	LOC_Os01g64250	Fe accumulation	Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation.	These results indicate that both OsHRZ1 and OsHRZ2 negatively regulate Fe efficiency and accumulation, whereas OsHORZ1 may have the opposite effect.
OsHOS1	Os03g0737200	LOC_Os03g52700	cold stress	Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response	To address this issue, we have identified a rice E3-ubiquitin ligase, OsHOS1, and characterized its role in the modulation of the cold stress response
OsHOS1	Os03g0737200	LOC_Os03g52700	cold stress	Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response	Taken together our results confirm the importance of OsHOS1, and thus of the proteasome, in the modulation of the cold stress signalling in rice
OsHOS1	Os03g0737200	LOC_Os03g52700	cold stress	Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response	Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response
OsHOS1	Os03g0737200	LOC_Os03g52700	root	The rice E3 ubiquitin ligase OsHOS1 modulates the expression of OsRMC, a gene involved in root mechano-sensing, through the interaction with two ERF transcription factors.	The rice E3 ubiquitin ligase OsHOS1 modulates the expression of OsRMC, a gene involved in root mechano-sensing, through the interaction with two ERF transcription factors.
OsHOS1	Os03g0737200	LOC_Os03g52700	root	The rice E3 ubiquitin ligase OsHOS1 modulates the expression of OsRMC, a gene involved in root mechano-sensing, through the interaction with two ERF transcription factors.	The morphological analysis of the roots in transgenic RNAi::OsHOS1 (RNA interference) and wild type (WT) plants, exposed to a mechanical barrier, revealed that the OsHOS1 silencing plants keep a straight root in contrast to WT that exhibit root curling
OsHOS1	Os03g0737200	LOC_Os03g52700	transcription factor	The rice E3 ubiquitin ligase OsHOS1 modulates the expression of OsRMC, a gene involved in root mechano-sensing, through the interaction with two ERF transcription factors.	The rice E3 ubiquitin ligase OsHOS1 modulates the expression of OsRMC, a gene involved in root mechano-sensing, through the interaction with two ERF transcription factors.
OsHOS1	Os03g0737200	LOC_Os03g52700	transcription factor	The rice E3 ubiquitin ligase OsHOS1 modulates the expression of OsRMC, a gene involved in root mechano-sensing, through the interaction with two ERF transcription factors.	Using the yeast two-hybrid system and BiFC assays we showed that OsHOS1 interacts with two ERF transcription factors (TFs), OsEREBP1 and OsEREBP2, known to regulate OsRMC gene expression
OsHOS1	Os03g0737200	LOC_Os03g52700	Ubiquitin	The rice E3 ubiquitin ligase OsHOS1 modulates the expression of OsRMC, a gene involved in root mechano-sensing, through the interaction with two ERF transcription factors.	The rice E3 ubiquitin ligase OsHOS1 modulates the expression of OsRMC, a gene involved in root mechano-sensing, through the interaction with two ERF transcription factors.
OsHOS1	Os03g0737200	LOC_Os03g52700	root	Rice root curling, a response to mechanosensing, is modulated by the rice E3-ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 (OsHOS1).	We showed that OsHOS1 is involved in the regulation of root curling after mechanosensing and that RNAi::OsHOS1 plants failed to exhibit the root curling phenotype observed in WT
OsHOS1	Os03g0737200	LOC_Os03g52700	growth	Rice root curling, a response to mechanosensing, is modulated by the rice E3-ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 (OsHOS1).	Altogether, our results highlight the role of the proteasome modulating plant responses to mechanical stimuli and suggest that OsHOS1 is a hub integrating environmental and hormonal signaling into plant growth and development
OsHOS1	Os03g0737200	LOC_Os03g52700	development	Rice root curling, a response to mechanosensing, is modulated by the rice E3-ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 (OsHOS1).	Altogether, our results highlight the role of the proteasome modulating plant responses to mechanical stimuli and suggest that OsHOS1 is a hub integrating environmental and hormonal signaling into plant growth and development
OsHOS1	Os03g0737200	LOC_Os03g52700	plant growth	Rice root curling, a response to mechanosensing, is modulated by the rice E3-ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 (OsHOS1).	Altogether, our results highlight the role of the proteasome modulating plant responses to mechanical stimuli and suggest that OsHOS1 is a hub integrating environmental and hormonal signaling into plant growth and development
OsHox1	Os10g0561800	LOC_Os10g41230	auxin	The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition	The auxin-inducible homeobox gene Oshox1 of rice (Oryza sativa) is a positive regulator of procambial cell fate commitment, and its overexpression reduces the sensitivity of polar auxin transport (PAT) to the PAT inhibitor 1-N-naphthylphthalamic acid (NPA)
OsHox1	Os10g0561800	LOC_Os10g41230	auxin	The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition	Finally, we show that in the absence of any overt phenotypical change, Oshox1 overexpression specifically reduces the affinity of the NPA-binding protein toward NPA and enhances PAT and its sensitivity toward auxin
OsHox1	Os10g0561800	LOC_Os10g41230	auxin	The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition	These results are consistent with the hypothesis that Oshox1 promotes fate commitment of procambial cells by increasing their auxin conductivity properties and stabilizing this state against modulations of PAT by an endogenous NPA-like molecule
OsHox1	Os10g0561800	LOC_Os10g41230	auxin	The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition	The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition
OsHox1	Os10g0561800	LOC_Os10g41230	shoot	Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice	Oshox1 mRNA could be detected in various rice tissues at different developmental stages, with highest levels in embryos, shoots of seedlings, and leaves of mature plants
OsHox1	Os10g0561800	LOC_Os10g41230	growth	Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice	Transgenic expression of Oshox1 in Arabidopsis retarded growth and affected leaf size and shape, indicative of a role as developmental regulator
OsHox1	Os10g0561800	LOC_Os10g41230	transcription factor	A role for the rice homeobox gene Oshox1 in provascular cell fate commitment	The rice protein Oshox1 is a member of the homeodomain leucine zipper family of transcription factors
OsHox1	Os10g0561800	LOC_Os10g41230	transcription factor	A role for the rice homeobox gene Oshox1 in provascular cell fate commitment	Oshox1 represents the first example of a transcription factor whose function can be linked to specification events mediating provascular cell fate commitment
OsHox1	Os10g0561800	LOC_Os10g41230	transcription factor	Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice	This paper describes the characterization of Oshox1, a cDNA clone from rice encoding a member of the homeodomain-leucine zipper (HD-Zip) class of putative transcription factors
OsHox1	Os10g0561800	LOC_Os10g41230	transcription factor	Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice	In vitro and in vivo DNA-binding studies revealed that Oshox1 interacts with the pseudopalindromic sequence CAAT(C/G)ATTG, confirming that the protein represents a transcription factor
OsHox1	Os10g0561800	LOC_Os10g41230	leaf	Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice	Transgenic expression of Oshox1 in Arabidopsis retarded growth and affected leaf size and shape, indicative of a role as developmental regulator
OsHox1	Os10g0561800	LOC_Os10g41230	seedling	Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice	Oshox1 mRNA could be detected in various rice tissues at different developmental stages, with highest levels in embryos, shoots of seedlings, and leaves of mature plants
OsHox1	Os10g0561800	LOC_Os10g41230	shoot gravitropism	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In this study, two class II homeodomain-Leu zipper genes, OsHOX1 and OsHOX28, were identified as positive regulators of tiller angle by affecting shoot gravitropism
OsHox1	Os10g0561800	LOC_Os10g41230	shoot	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In this study, two class II homeodomain-Leu zipper genes, OsHOX1 and OsHOX28, were identified as positive regulators of tiller angle by affecting shoot gravitropism
OsHox1	Os10g0561800	LOC_Os10g41230	shoot	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In contrast to HSFA2D and LA1, OsHOX1 and OsHOX28 attenuated lateral auxin transport, thus repressing the expression of WUSCHEL-RELATED HOMEOBOX 6 (WOX6) and WOX11 in the lower side of the shoot base of plants subjected to gravistimulation
OsHox1	Os10g0561800	LOC_Os10g41230	auxin	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content
OsHox1	Os10g0561800	LOC_Os10g41230	auxin	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In contrast to HSFA2D and LA1, OsHOX1 and OsHOX28 attenuated lateral auxin transport, thus repressing the expression of WUSCHEL-RELATED HOMEOBOX 6 (WOX6) and WOX11 in the lower side of the shoot base of plants subjected to gravistimulation
OsHox1	Os10g0561800	LOC_Os10g41230	auxin	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Genetic analysis further confirmed that OsHOX1 and OsHOX28 act upstream of HSFA2D Additionally, both OsHOX1 and OsHOX28 inhibit the expression of multiple OsYUCCA genes and decrease auxin biosynthesis
OsHox1	Os10g0561800	LOC_Os10g41230	auxin	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Taken together, these results demonstrated that OsHOX1 and OsHOX28 regulate the local distribution of auxin, and thus tiller angle establishment, through suppression of the HSFA2D-LA1 pathway and reduction of endogenous auxin content
OsHox1	Os10g0561800	LOC_Os10g41230	tiller	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content
OsHox1	Os10g0561800	LOC_Os10g41230	tiller	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In this study, two class II homeodomain-Leu zipper genes, OsHOX1 and OsHOX28, were identified as positive regulators of tiller angle by affecting shoot gravitropism
OsHox1	Os10g0561800	LOC_Os10g41230	tiller	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Taken together, these results demonstrated that OsHOX1 and OsHOX28 regulate the local distribution of auxin, and thus tiller angle establishment, through suppression of the HSFA2D-LA1 pathway and reduction of endogenous auxin content
OsHox1	Os10g0561800	LOC_Os10g41230	auxin transport	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In contrast to HSFA2D and LA1, OsHOX1 and OsHOX28 attenuated lateral auxin transport, thus repressing the expression of WUSCHEL-RELATED HOMEOBOX 6 (WOX6) and WOX11 in the lower side of the shoot base of plants subjected to gravistimulation
OsHox1	Os10g0561800	LOC_Os10g41230	auxin biosynthesis	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Genetic analysis further confirmed that OsHOX1 and OsHOX28 act upstream of HSFA2D Additionally, both OsHOX1 and OsHOX28 inhibit the expression of multiple OsYUCCA genes and decrease auxin biosynthesis
OsHox1	Os10g0561800	LOC_Os10g41230	tiller angle	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content
OsHox1	Os10g0561800	LOC_Os10g41230	tiller angle	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In this study, two class II homeodomain-Leu zipper genes, OsHOX1 and OsHOX28, were identified as positive regulators of tiller angle by affecting shoot gravitropism
OsHox1	Os10g0561800	LOC_Os10g41230	tiller angle	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Taken together, these results demonstrated that OsHOX1 and OsHOX28 regulate the local distribution of auxin, and thus tiller angle establishment, through suppression of the HSFA2D-LA1 pathway and reduction of endogenous auxin content
Oshox14	Os07g0581700	LOC_Os07g39320	transcription factor	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.
Oshox14	Os07g0581700	LOC_Os07g39320	panicle	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Overexpression of Oshox12 and Oshox14 in rice resulted in reduced panicle length and a dwarf phenotype
Oshox14	Os07g0581700	LOC_Os07g39320	panicle	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	In addition, Oshox14 overexpression lines showed a deficiency in panicle exsertion
Oshox14	Os07g0581700	LOC_Os07g39320	panicle	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Our findings suggest that Oshox12 and Oshox14 may be involved in the regulation of panicle development
Oshox14	Os07g0581700	LOC_Os07g39320	development	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Our findings suggest that Oshox12 and Oshox14 may be involved in the regulation of panicle development
Oshox14	Os07g0581700	LOC_Os07g39320	dwarf	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	Overexpression of Oshox12 and Oshox14 in rice resulted in reduced panicle length and a dwarf phenotype
Oshox22	Os04g0541700	LOC_Os04g45810	ABA	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Rice plants homozygous for a T-DNA insertion in the promoter region of Oshox22 showed reduced Oshox22 expression and ABA content, decreased sensitivity to ABA, and enhanced tolerance to drought and salt stresses at the seedling stage
Oshox22	Os04g0541700	LOC_Os04g45810	ABA	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	In contrast, transgenic rice over-expressing Oshox22 showed increased sensitivity to ABA, increased ABA content, and decreased drought and salt tolerances
Oshox22	Os04g0541700	LOC_Os04g45810	ABA	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Based on these results, we conclude that Oshox22 affects ABA biosynthesis and regulates drought and salt responses through ABA-mediated signal transduction pathways
Oshox22	Os04g0541700	LOC_Os04g45810	transcription factor	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Oshox22 belongs to the homeodomain-leucine zipper (HD-Zip) family I of transcription factors, most of which have unknown functions
Oshox22	Os04g0541700	LOC_Os04g45810	salt stress	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Here we show that the expression of Oshox22 is strongly induced by salt stress, abscisic acid (ABA), and polyethylene glycol treatment (PEG), and weakly by cold stress
Oshox22	Os04g0541700	LOC_Os04g45810	salt stress	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Rice plants homozygous for a T-DNA insertion in the promoter region of Oshox22 showed reduced Oshox22 expression and ABA content, decreased sensitivity to ABA, and enhanced tolerance to drought and salt stresses at the seedling stage
Oshox22	Os04g0541700	LOC_Os04g45810	salt tolerance	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	In contrast, transgenic rice over-expressing Oshox22 showed increased sensitivity to ABA, increased ABA content, and decreased drought and salt tolerances
Oshox22	Os04g0541700	LOC_Os04g45810	salt tolerance	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice
Oshox22	Os04g0541700	LOC_Os04g45810	ethylene	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Here we show that the expression of Oshox22 is strongly induced by salt stress, abscisic acid (ABA), and polyethylene glycol treatment (PEG), and weakly by cold stress
Oshox22	Os04g0541700	LOC_Os04g45810	cold stress	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Here we show that the expression of Oshox22 is strongly induced by salt stress, abscisic acid (ABA), and polyethylene glycol treatment (PEG), and weakly by cold stress
Oshox22	Os04g0541700	LOC_Os04g45810	seedling	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Rice plants homozygous for a T-DNA insertion in the promoter region of Oshox22 showed reduced Oshox22 expression and ABA content, decreased sensitivity to ABA, and enhanced tolerance to drought and salt stresses at the seedling stage
Oshox22	Os04g0541700	LOC_Os04g45810	salt	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Here we show that the expression of Oshox22 is strongly induced by salt stress, abscisic acid (ABA), and polyethylene glycol treatment (PEG), and weakly by cold stress
Oshox22	Os04g0541700	LOC_Os04g45810	salt	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Rice plants homozygous for a T-DNA insertion in the promoter region of Oshox22 showed reduced Oshox22 expression and ABA content, decreased sensitivity to ABA, and enhanced tolerance to drought and salt stresses at the seedling stage
Oshox22	Os04g0541700	LOC_Os04g45810	salt	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	In contrast, transgenic rice over-expressing Oshox22 showed increased sensitivity to ABA, increased ABA content, and decreased drought and salt tolerances
Oshox22	Os04g0541700	LOC_Os04g45810	salt	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Based on these results, we conclude that Oshox22 affects ABA biosynthesis and regulates drought and salt responses through ABA-mediated signal transduction pathways
Oshox22	Os04g0541700	LOC_Os04g45810	salt	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice
Oshox22	Os04g0541700	LOC_Os04g45810	drought	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Rice plants homozygous for a T-DNA insertion in the promoter region of Oshox22 showed reduced Oshox22 expression and ABA content, decreased sensitivity to ABA, and enhanced tolerance to drought and salt stresses at the seedling stage
Oshox22	Os04g0541700	LOC_Os04g45810	drought	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	In contrast, transgenic rice over-expressing Oshox22 showed increased sensitivity to ABA, increased ABA content, and decreased drought and salt tolerances
Oshox22	Os04g0541700	LOC_Os04g45810	drought	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Based on these results, we conclude that Oshox22 affects ABA biosynthesis and regulates drought and salt responses through ABA-mediated signal transduction pathways
Oshox22	Os04g0541700	LOC_Os04g45810	drought	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice
OsHOX24	Os02g0649300	LOC_Os02g43330	abiotic stress	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.
OsHOX24	Os02g0649300	LOC_Os02g43330	abiotic stress	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Over-expression of OsHOX24 imparted higher sensitivity to stress hormone, ABA, and abiotic stresses in the transgenic Arabidopsis plants as revealed by various physiological and phenotypic assays
OsHOX24	Os02g0649300	LOC_Os02g43330	stress	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.
OsHOX24	Os02g0649300	LOC_Os02g43330	stress	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Over-expression of OsHOX24 imparted higher sensitivity to stress hormone, ABA, and abiotic stresses in the transgenic Arabidopsis plants as revealed by various physiological and phenotypic assays
OsHOX24	Os02g0649300	LOC_Os02g43330	biotic stress	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.
OsHOX24	Os02g0649300	LOC_Os02g43330	biotic stress	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Over-expression of OsHOX24 imparted higher sensitivity to stress hormone, ABA, and abiotic stresses in the transgenic Arabidopsis plants as revealed by various physiological and phenotypic assays
OsHOX24	Os02g0649300	LOC_Os02g43330	stress response	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.
OsHOX24	Os02g0649300	LOC_Os02g43330	homeobox gene	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.
OsHOX24	Os02g0649300	LOC_Os02g43330	homeobox gene	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	In this study, we carried out functional analysis of two candidate stress-responsive HD-ZIP I class homeobox genes from rice, OsHOX22, and OsHOX24
OsHOX24	Os02g0649300	LOC_Os02g43330	seedlings	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	OsHOX24 over-expression rice seedlings showed reduced root and shoot growth under salinity and desiccation stress (DS) conditions
OsHOX24	Os02g0649300	LOC_Os02g43330	root	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	OsHOX24 over-expression rice seedlings showed reduced root and shoot growth under salinity and desiccation stress (DS) conditions
OsHOX24	Os02g0649300	LOC_Os02g43330	growth	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	OsHOX24 over-expression rice seedlings showed reduced root and shoot growth under salinity and desiccation stress (DS) conditions
OsHOX24	Os02g0649300	LOC_Os02g43330	shoot	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	OsHOX24 over-expression rice seedlings showed reduced root and shoot growth under salinity and desiccation stress (DS) conditions
OsHOX24	Os02g0649300	LOC_Os02g43330	development	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	In the present study, we raised rice transgenics over-expressing stress-responsive OsHOX24 gene (rice homeodomain-leucine zipper I sub-family member) and analyzed their response to various abiotic stresses at different stages of development
OsHOX24	Os02g0649300	LOC_Os02g43330	seed	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	At the seed germination stage, rice transgenics over-expressing OsHOX24 exhibited enhanced sensitivity to abiotic stress conditions and abscisic acid as compared to wild-type (WT)
OsHOX24	Os02g0649300	LOC_Os02g43330	salinity	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	OsHOX24 over-expression rice seedlings showed reduced root and shoot growth under salinity and desiccation stress (DS) conditions
OsHOX24	Os02g0649300	LOC_Os02g43330	seed germination	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	At the seed germination stage, rice transgenics over-expressing OsHOX24 exhibited enhanced sensitivity to abiotic stress conditions and abscisic acid as compared to wild-type (WT)
OsHOX24	Os02g0649300	LOC_Os02g43330	abiotic stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.
OsHOX24	Os02g0649300	LOC_Os02g43330	abiotic stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	In the present study, we raised rice transgenics over-expressing stress-responsive OsHOX24 gene (rice homeodomain-leucine zipper I sub-family member) and analyzed their response to various abiotic stresses at different stages of development
OsHOX24	Os02g0649300	LOC_Os02g43330	abiotic stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	At the seed germination stage, rice transgenics over-expressing OsHOX24 exhibited enhanced sensitivity to abiotic stress conditions and abscisic acid as compared to wild-type (WT)
OsHOX24	Os02g0649300	LOC_Os02g43330	abiotic stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	Taken together, our findings highlighted the role of OsHOX24 in regulation of abiotic stress responses via modulating the expression of stress-responsive genes in rice
OsHOX24	Os02g0649300	LOC_Os02g43330	stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	At the seed germination stage, rice transgenics over-expressing OsHOX24 exhibited enhanced sensitivity to abiotic stress conditions and abscisic acid as compared to wild-type (WT)
OsHOX24	Os02g0649300	LOC_Os02g43330	stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	OsHOX24 over-expression rice seedlings showed reduced root and shoot growth under salinity and desiccation stress (DS) conditions
OsHOX24	Os02g0649300	LOC_Os02g43330	stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	Taken together, our findings highlighted the role of OsHOX24 in regulation of abiotic stress responses via modulating the expression of stress-responsive genes in rice
OsHOX24	Os02g0649300	LOC_Os02g43330	biotic stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.
OsHOX24	Os02g0649300	LOC_Os02g43330	biotic stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	In the present study, we raised rice transgenics over-expressing stress-responsive OsHOX24 gene (rice homeodomain-leucine zipper I sub-family member) and analyzed their response to various abiotic stresses at different stages of development
OsHOX24	Os02g0649300	LOC_Os02g43330	biotic stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	At the seed germination stage, rice transgenics over-expressing OsHOX24 exhibited enhanced sensitivity to abiotic stress conditions and abscisic acid as compared to wild-type (WT)
OsHOX24	Os02g0649300	LOC_Os02g43330	biotic stress	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	Taken together, our findings highlighted the role of OsHOX24 in regulation of abiotic stress responses via modulating the expression of stress-responsive genes in rice
OsHOX24	Os02g0649300	LOC_Os02g43330	abscisic acid	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	At the seed germination stage, rice transgenics over-expressing OsHOX24 exhibited enhanced sensitivity to abiotic stress conditions and abscisic acid as compared to wild-type (WT)
OsHOX24	Os02g0649300	LOC_Os02g43330	stress response	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	Taken together, our findings highlighted the role of OsHOX24 in regulation of abiotic stress responses via modulating the expression of stress-responsive genes in rice
OsHOX24	Os02g0649300	LOC_Os02g43330	transcription factor	Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice	OsHOX24 mediates regulation of desiccation stress response via complex regulatory network as indicated by its binding to several target genes including transcription factors in rice
OsHOX24	Os02g0649300	LOC_Os02g43330	plant development	Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice	Gene ontology enrichment analysis revealed that OsHOX24 direct target genes were involved in several biological processes, including plant development, ABA-mediated signalling pathway, ubiquitin-dependent protein catabolic process, ion transport, abiotic and biotic stress responses besides transcriptional and translational regulation
OsHOX24	Os02g0649300	LOC_Os02g43330	stress	Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice	OsHOX24 mediates regulation of desiccation stress response via complex regulatory network as indicated by its binding to several target genes including transcription factors in rice
OsHOX24	Os02g0649300	LOC_Os02g43330	stress	Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice	In this study, we identified downstream targets of OsHOX24 under control and desiccation stress conditions via chromatin immunoprecipitation-sequencing (ChIP-seq) approach in wild-type and OsHOX24 over-expression transgenic in rice
OsHOX24	Os02g0649300	LOC_Os02g43330	stress	Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice	Gene ontology enrichment analysis revealed that OsHOX24 direct target genes were involved in several biological processes, including plant development, ABA-mediated signalling pathway, ubiquitin-dependent protein catabolic process, ion transport, abiotic and biotic stress responses besides transcriptional and translational regulation
OsHOX24	Os02g0649300	LOC_Os02g43330	biotic stress	Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice	Gene ontology enrichment analysis revealed that OsHOX24 direct target genes were involved in several biological processes, including plant development, ABA-mediated signalling pathway, ubiquitin-dependent protein catabolic process, ion transport, abiotic and biotic stress responses besides transcriptional and translational regulation
OsHOX24	Os02g0649300	LOC_Os02g43330	stress response	Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice	OsHOX24 mediates regulation of desiccation stress response via complex regulatory network as indicated by its binding to several target genes including transcription factors in rice
OsHOX24	Os02g0649300	LOC_Os02g43330	stress response	Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice	Gene ontology enrichment analysis revealed that OsHOX24 direct target genes were involved in several biological processes, including plant development, ABA-mediated signalling pathway, ubiquitin-dependent protein catabolic process, ion transport, abiotic and biotic stress responses besides transcriptional and translational regulation
OsHOX28	Os06g0140400	LOC_Os06g04850	shoot	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In contrast to HSFA2D and LA1, OsHOX1 and OsHOX28 attenuated lateral auxin transport, thus repressing the expression of WUSCHEL-RELATED HOMEOBOX 6 (WOX6) and WOX11 in the lower side of the shoot base of plants subjected to gravistimulation
OsHOX28	Os06g0140400	LOC_Os06g04850	auxin	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content
OsHOX28	Os06g0140400	LOC_Os06g04850	auxin	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In contrast to HSFA2D and LA1, OsHOX1 and OsHOX28 attenuated lateral auxin transport, thus repressing the expression of WUSCHEL-RELATED HOMEOBOX 6 (WOX6) and WOX11 in the lower side of the shoot base of plants subjected to gravistimulation
OsHOX28	Os06g0140400	LOC_Os06g04850	auxin	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Genetic analysis further confirmed that OsHOX1 and OsHOX28 act upstream of HSFA2D Additionally, both OsHOX1 and OsHOX28 inhibit the expression of multiple OsYUCCA genes and decrease auxin biosynthesis
OsHOX28	Os06g0140400	LOC_Os06g04850	auxin	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Taken together, these results demonstrated that OsHOX1 and OsHOX28 regulate the local distribution of auxin, and thus tiller angle establishment, through suppression of the HSFA2D-LA1 pathway and reduction of endogenous auxin content
OsHOX28	Os06g0140400	LOC_Os06g04850	tiller	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content
OsHOX28	Os06g0140400	LOC_Os06g04850	tiller	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Taken together, these results demonstrated that OsHOX1 and OsHOX28 regulate the local distribution of auxin, and thus tiller angle establishment, through suppression of the HSFA2D-LA1 pathway and reduction of endogenous auxin content
OsHOX28	Os06g0140400	LOC_Os06g04850	auxin transport	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	In contrast to HSFA2D and LA1, OsHOX1 and OsHOX28 attenuated lateral auxin transport, thus repressing the expression of WUSCHEL-RELATED HOMEOBOX 6 (WOX6) and WOX11 in the lower side of the shoot base of plants subjected to gravistimulation
OsHOX28	Os06g0140400	LOC_Os06g04850	auxin biosynthesis	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Genetic analysis further confirmed that OsHOX1 and OsHOX28 act upstream of HSFA2D Additionally, both OsHOX1 and OsHOX28 inhibit the expression of multiple OsYUCCA genes and decrease auxin biosynthesis
OsHOX28	Os06g0140400	LOC_Os06g04850	tiller angle	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content
OsHOX28	Os06g0140400	LOC_Os06g04850	tiller angle	OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content	Taken together, these results demonstrated that OsHOX1 and OsHOX28 regulate the local distribution of auxin, and thus tiller angle establishment, through suppression of the HSFA2D-LA1 pathway and reduction of endogenous auxin content
Oshox4	Os09g0470500	LOC_Os09g29460	leaf	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses	Oshox4 transcripts were detected in leaf and floral organ primordia but excluded from the shoot apical meristem and the protein was nuclear localized
Oshox4	Os09g0470500	LOC_Os09g29460	gibberellin	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses
Oshox4	Os09g0470500	LOC_Os09g29460	shoot	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses	Oshox4 transcripts were detected in leaf and floral organ primordia but excluded from the shoot apical meristem and the protein was nuclear localized
Oshox4	Os09g0470500	LOC_Os09g29460	floral	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses	Oshox4 transcripts were detected in leaf and floral organ primordia but excluded from the shoot apical meristem and the protein was nuclear localized
Oshox4	Os09g0470500	LOC_Os09g29460	dwarf	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses	Over-expression of Oshox4 in rice induced a semi-dwarf phenotype that could not be complemented by applied GA3
Oshox4	Os09g0470500	LOC_Os09g29460	meristem	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses	Oshox4 transcripts were detected in leaf and floral organ primordia but excluded from the shoot apical meristem and the protein was nuclear localized
Oshox4	Os09g0470500	LOC_Os09g29460	ga	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses	Interestingly, the expression of YAB1 that is involved in the negative feedback regulation of the GA biosynthesis was upregulated in the Oshox4 over-expressing plants
Oshox4	Os09g0470500	LOC_Os09g29460	ga	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses	These data together suggest that Oshox4 may be involved in the negative regulation of GA signalling and may play a role to fine tune GA responses in rice
Oshox4	Os09g0470500	LOC_Os09g29460	shoot apical meristem	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses	Oshox4 transcripts were detected in leaf and floral organ primordia but excluded from the shoot apical meristem and the protein was nuclear localized
OsHPL3	Os02g0110200	LOC_Os02g02000	sheath	Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis	OsHPL1 is ubiquitously expressed, OsHPL2 is expressed in the leaves and leaf sheaths, whereas OsHPL3 is wound inducible and expressed exclusively in leaves
OsHPL3	Os02g0110200	LOC_Os02g02000	leaf	The chloroplast-localized phospholipases D alpha4 and alpha5 regulate herbivore-induced direct and indirect defenses in rice	Antisense expression of OsPLDalpha4 and -alpha5 (as-pld), which resulted in a 50% reduction of the expression of the two genes, reduced elicited levels of linolenic acid, JA, green leaf volatiles, and ethylene and attenuated the SSB-induced expression of a mitogen-activated protein kinase (OsMPK3), a lipoxygenase (OsHI-LOX), a hydroperoxide lyase (OsHPL3), as well as a 1-aminocyclopropane-1-carboxylic acid synthase (OsACS2)
OsHPL3	Os02g0110200	LOC_Os02g02000	ethylene	The chloroplast-localized phospholipases D alpha4 and alpha5 regulate herbivore-induced direct and indirect defenses in rice	Antisense expression of OsPLDalpha4 and -alpha5 (as-pld), which resulted in a 50% reduction of the expression of the two genes, reduced elicited levels of linolenic acid, JA, green leaf volatiles, and ethylene and attenuated the SSB-induced expression of a mitogen-activated protein kinase (OsMPK3), a lipoxygenase (OsHI-LOX), a hydroperoxide lyase (OsHPL3), as well as a 1-aminocyclopropane-1-carboxylic acid synthase (OsACS2)
OsHPL3	Os02g0110200	LOC_Os02g02000	brown planthopper	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway	OsHPL3 positively modulates resistance to the rice brown planthopper [BPH, Nilaparvata lugens (Stal)] but negatively modulates resistance to the rice striped stem borer [SSB, Chilo suppressalis (Walker)]
OsHPL3	Os02g0110200	LOC_Os02g02000	defense	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway	Here, we describe identification of a role for the rice HPL3 gene, which encodes a hydroperoxide lyase (HPL), OsHPL3/CYP74B2, in mediating plant-specific defense responses
OsHPL3	Os02g0110200	LOC_Os02g02000	defense	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway	Collectively, these results indicate that OsHPL3, by affecting the levels of JA, GLVs and other volatiles, modulates rice-specific defense responses against different invaders
OsHPL3	Os02g0110200	LOC_Os02g02000	defense	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway
OsHPL3	Os02g0110200	LOC_Os02g02000	stem	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway	OsHPL3 positively modulates resistance to the rice brown planthopper [BPH, Nilaparvata lugens (Stal)] but negatively modulates resistance to the rice striped stem borer [SSB, Chilo suppressalis (Walker)]
OsHPL3	Os02g0110200	LOC_Os02g02000	defense response	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway	Here, we describe identification of a role for the rice HPL3 gene, which encodes a hydroperoxide lyase (HPL), OsHPL3/CYP74B2, in mediating plant-specific defense responses
OsHPL3	Os02g0110200	LOC_Os02g02000	defense response	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway	Collectively, these results indicate that OsHPL3, by affecting the levels of JA, GLVs and other volatiles, modulates rice-specific defense responses against different invaders
OsHPL3	Os02g0110200	LOC_Os02g02000	defense response	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway
OsHPL3	Os02g0110200	LOC_Os02g02000	leaf	Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis	OsHPL1 is ubiquitously expressed, OsHPL2 is expressed in the leaves and leaf sheaths, whereas OsHPL3 is wound inducible and expressed exclusively in leaves
OsHPP04	Os02g0584800	LOC_Os02g37300	resistance	CRISPR/Cas9-mediated mutagenesis of the susceptibility gene OsHPP04 in rice confers enhanced resistance to rice root-knot nematode.	CRISPR/Cas9-mediated mutagenesis of the susceptibility gene OsHPP04 in rice confers enhanced resistance to rice root-knot nematode.
OsHPP04	Os02g0584800	LOC_Os02g37300	immunity	CRISPR/Cas9-mediated mutagenesis of the susceptibility gene OsHPP04 in rice confers enhanced resistance to rice root-knot nematode.	 These findings suggest that OsHPP04 may be an S gene as a negative regulator of host immunity and genetic modification of S genes through the CRISPR/Cas9 technology can be used as a powerful tool to generate PPN resistant plant varieties
OsHPP04	Os02g0584800	LOC_Os02g37300	resistant	CRISPR/Cas9-mediated mutagenesis of the susceptibility gene OsHPP04 in rice confers enhanced resistance to rice root-knot nematode.	 These findings suggest that OsHPP04 may be an S gene as a negative regulator of host immunity and genetic modification of S genes through the CRISPR/Cas9 technology can be used as a powerful tool to generate PPN resistant plant varieties
OsHPPD	Os02g0168100	LOC_Os02g07160	resistance	CRISPR/Cas9-mediated editing of OsHPPD 3'-UTR confers enhanced resistance to HPPD-inhibiting herbicide in rice	CRISPR/Cas9-mediated editing of OsHPPD 3'-UTR confers enhanced resistance to HPPD-inhibiting herbicide in rice
OsHPPD	Os02g0168100	LOC_Os02g07160	herbicide	CRISPR/Cas9-mediated editing of OsHPPD 3'-UTR confers enhanced resistance to HPPD-inhibiting herbicide in rice	CRISPR/Cas9-mediated editing of OsHPPD 3'-UTR confers enhanced resistance to HPPD-inhibiting herbicide in rice
OsHPPD	Os02g0168100	LOC_Os02g07160	herbicide resistance	CRISPR/Cas9-mediated editing of OsHPPD 3'-UTR confers enhanced resistance to HPPD-inhibiting herbicide in rice	CRISPR/Cas9-mediated editing of OsHPPD 3'-UTR confers enhanced resistance to HPPD-inhibiting herbicide in rice
OsHRC	Os01g0120700	LOC_Os01g03060	resistance	Loss of OsHRC function confers blast resistance without yield penalty in rice	Loss of OsHRC function confers blast resistance without yield penalty in rice
OsHRC	Os01g0120700	LOC_Os01g03060	yield	Loss of OsHRC function confers blast resistance without yield penalty in rice	Loss of OsHRC function confers blast resistance without yield penalty in rice
OsHRC	Os01g0120700	LOC_Os01g03060	blast	Loss of OsHRC function confers blast resistance without yield penalty in rice	Loss of OsHRC function confers blast resistance without yield penalty in rice
OsHRC	Os01g0120700	LOC_Os01g03060	blast resistance	Loss of OsHRC function confers blast resistance without yield penalty in rice	Loss of OsHRC function confers blast resistance without yield penalty in rice
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	Ubiquitin	OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.	Co-immunoprecipitation experiments demonstrated that OsHrd3 interacts with components of the Hrd1 ubiquitin ligase complex such as OsOS-9 and OsHrd1 in rice protoplasts
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	root	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	MAL RNA-interfered (MRi) transgenic plants exhibited a phenotype with shorter crown root length and lower crown root number, accompanied by a lower cell division rate
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	root	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	The low division rate was observed in the root meristem exactly where MAL was expressed
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	cell division	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	MAL RNA-interfered (MRi) transgenic plants exhibited a phenotype with shorter crown root length and lower crown root number, accompanied by a lower cell division rate
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	meristem	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	The low division rate was observed in the root meristem exactly where MAL was expressed
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	cell wall	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	Furthermore, transcriptome data revealed that cell wall macromolecule metabolism-related genes and redox-related genes were enriched in MAL RNAi lines
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	crown	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	MAL RNA-interfered (MRi) transgenic plants exhibited a phenotype with shorter crown root length and lower crown root number, accompanied by a lower cell division rate
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	crown root	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	MAL RNA-interfered (MRi) transgenic plants exhibited a phenotype with shorter crown root length and lower crown root number, accompanied by a lower cell division rate
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	root length	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	MAL RNA-interfered (MRi) transgenic plants exhibited a phenotype with shorter crown root length and lower crown root number, accompanied by a lower cell division rate
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	root meristem	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	The low division rate was observed in the root meristem exactly where MAL was expressed
OsHrd1|MAL	Os06g0301000	LOC_Os06g19680	root number	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice	MAL RNA-interfered (MRi) transgenic plants exhibited a phenotype with shorter crown root length and lower crown root number, accompanied by a lower cell division rate
OsHrd3	Os03g0259300	LOC_Os03g15350	endosperm	OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.	Since Hrd3/SEL1L recognizes unfolded proteins in yeast and mammalian protein quality control systems, the role of OsHrd3 in protein quality control in rice endosperm was investigated
OsHrd3	Os03g0259300	LOC_Os03g15350	Ubiquitin	OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.	Co-immunoprecipitation experiments demonstrated that OsHrd3 interacts with components of the Hrd1 ubiquitin ligase complex such as OsOS-9 and OsHrd1 in rice protoplasts
OsHrd3	Os03g0259300	LOC_Os03g15350	quality	OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.	OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.
OsHrd3	Os03g0259300	LOC_Os03g15350	quality	OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.	Since Hrd3/SEL1L recognizes unfolded proteins in yeast and mammalian protein quality control systems, the role of OsHrd3 in protein quality control in rice endosperm was investigated
OsHrd3	Os03g0259300	LOC_Os03g15350	quality	OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.	Endosperm-specific suppression of OsHrd3 in transgenic rice reduced the levels of polyubiquitinated proteins and resulted in unfolded protein responses (UPRs) in the endosperm, suggesting that OsHrd3-mediated polyubiquitination plays an important role in ER quality control
OsHRZ1	Os01g0689300	None	zinc	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	Here we report the identification of new iron regulators in rice, designated Oryza sativa Haemerythrin motif-containing Really Interesting New Gene (RING)- and Zinc-finger protein 1 (OsHRZ1) and OsHRZ2
OsHRZ1	Os01g0689300	None	zinc	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	OsHRZ1, OsHRZ2 and their Arabidopsis homologue BRUTUS bind iron and zinc, and possess ubiquitination activity
OsHRZ1	Os01g0689300	None	iron	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	Here we report the identification of new iron regulators in rice, designated Oryza sativa Haemerythrin motif-containing Really Interesting New Gene (RING)- and Zinc-finger protein 1 (OsHRZ1) and OsHRZ2
OsHRZ1	Os01g0689300	None	iron	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	OsHRZ1, OsHRZ2 and their Arabidopsis homologue BRUTUS bind iron and zinc, and possess ubiquitination activity
OsHRZ1	Os01g0689300	None	iron	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	OsHRZ1 and OsHRZ2 are susceptible to degradation in roots irrespective of iron conditions
OsHRZ1	Os01g0689300	None	iron	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	These results suggest that OsHRZ1 and OsHRZ2 are iron-binding sensors that negatively regulate iron acquisition under conditions of iron sufficiency
OsHRZ1	Os01g0689300	None	root	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	OsHRZ1 and OsHRZ2 are susceptible to degradation in roots irrespective of iron conditions
OsHRZ1	Os01g0689300	None	transcription factor	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	Many jasmonate-inducible genes were also negatively regulated by the ubiquitin ligases OsHRZ1 and OsHRZ2 and positively regulated by the transcription factor IDEF1
OsHRZ1	Os01g0689300	None	Ubiquitin	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	Many jasmonate-inducible genes were also negatively regulated by the ubiquitin ligases OsHRZ1 and OsHRZ2 and positively regulated by the transcription factor IDEF1
OsHRZ1	Os01g0689300	None	iron	Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).	C1 (OE) rice plants modify the expression of the putative iron-sensing factors OsHRZ1 and OsHRZ2 and enhance the expression of OsIRO2 under copper excess, which suggests a role of copper transport in iron signaling
OsHRZ1	Os01g0689300	None	copper	Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).	C1 (OE) rice plants modify the expression of the putative iron-sensing factors OsHRZ1 and OsHRZ2 and enhance the expression of OsIRO2 under copper excess, which suggests a role of copper transport in iron signaling
OsHRZ1	Os01g0689300	None	growth	Rice HRZ ubiquitin ligases are crucial for response to excess iron.	Transgenic rice plants with repressed expression of OsHRZ1 and OsHRZ2 (HRZ knockdown lines) are tolerant to low iron availability and accumulate iron in shoots and seeds under both iron-sufficient and -deficient conditions without a growth penalty
OsHRZ1	Os01g0689300	None	iron	Rice HRZ ubiquitin ligases are crucial for response to excess iron.	Two iron-binding ubiquitin ligases, OsHRZ1 and OsHRZ2, negatively regulate such iron deficiency responses in rice (Oryza sativa)
OsHRZ1	Os01g0689300	None	iron	Rice HRZ ubiquitin ligases are crucial for response to excess iron.	Transgenic rice plants with repressed expression of OsHRZ1 and OsHRZ2 (HRZ knockdown lines) are tolerant to low iron availability and accumulate iron in shoots and seeds under both iron-sufficient and -deficient conditions without a growth penalty
OsHRZ1	Os01g0689300	None	Ubiquitin	Rice HRZ ubiquitin ligases are crucial for response to excess iron.	Two iron-binding ubiquitin ligases, OsHRZ1 and OsHRZ2, negatively regulate such iron deficiency responses in rice (Oryza sativa)
OsHRZ2	Os05g0551000	LOC_Os05g47780	zinc	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	Here we report the identification of new iron regulators in rice, designated Oryza sativa Haemerythrin motif-containing Really Interesting New Gene (RING)- and Zinc-finger protein 1 (OsHRZ1) and OsHRZ2
OsHRZ2	Os05g0551000	LOC_Os05g47780	zinc	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	OsHRZ1, OsHRZ2 and their Arabidopsis homologue BRUTUS bind iron and zinc, and possess ubiquitination activity
OsHRZ2	Os05g0551000	LOC_Os05g47780	iron	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	Here we report the identification of new iron regulators in rice, designated Oryza sativa Haemerythrin motif-containing Really Interesting New Gene (RING)- and Zinc-finger protein 1 (OsHRZ1) and OsHRZ2
OsHRZ2	Os05g0551000	LOC_Os05g47780	iron	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	OsHRZ1, OsHRZ2 and their Arabidopsis homologue BRUTUS bind iron and zinc, and possess ubiquitination activity
OsHRZ2	Os05g0551000	LOC_Os05g47780	iron	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	OsHRZ1 and OsHRZ2 are susceptible to degradation in roots irrespective of iron conditions
OsHRZ2	Os05g0551000	LOC_Os05g47780	iron	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	These results suggest that OsHRZ1 and OsHRZ2 are iron-binding sensors that negatively regulate iron acquisition under conditions of iron sufficiency
OsHRZ2	Os05g0551000	LOC_Os05g47780	root	Iron-binding Haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation	OsHRZ1 and OsHRZ2 are susceptible to degradation in roots irrespective of iron conditions
OsHRZ2	Os05g0551000	LOC_Os05g47780	transcription factor	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	Many jasmonate-inducible genes were also negatively regulated by the ubiquitin ligases OsHRZ1 and OsHRZ2 and positively regulated by the transcription factor IDEF1
OsHRZ2	Os05g0551000	LOC_Os05g47780	Ubiquitin	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	Many jasmonate-inducible genes were also negatively regulated by the ubiquitin ligases OsHRZ1 and OsHRZ2 and positively regulated by the transcription factor IDEF1
OsHRZ2	Os05g0551000	LOC_Os05g47780	iron	Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).	C1 (OE) rice plants modify the expression of the putative iron-sensing factors OsHRZ1 and OsHRZ2 and enhance the expression of OsIRO2 under copper excess, which suggests a role of copper transport in iron signaling
OsHRZ2	Os05g0551000	LOC_Os05g47780	copper	Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).	C1 (OE) rice plants modify the expression of the putative iron-sensing factors OsHRZ1 and OsHRZ2 and enhance the expression of OsIRO2 under copper excess, which suggests a role of copper transport in iron signaling
OsHRZ2	Os05g0551000	LOC_Os05g47780	growth	Rice HRZ ubiquitin ligases are crucial for response to excess iron.	Transgenic rice plants with repressed expression of OsHRZ1 and OsHRZ2 (HRZ knockdown lines) are tolerant to low iron availability and accumulate iron in shoots and seeds under both iron-sufficient and -deficient conditions without a growth penalty
OsHRZ2	Os05g0551000	LOC_Os05g47780	iron	Rice HRZ ubiquitin ligases are crucial for response to excess iron.	Transgenic rice plants with repressed expression of OsHRZ1 and OsHRZ2 (HRZ knockdown lines) are tolerant to low iron availability and accumulate iron in shoots and seeds under both iron-sufficient and -deficient conditions without a growth penalty
OsHSBP1	Os09g0375100	LOC_Os09g20830	seed development	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	This report describes the role of OsHSBP1 and OsHSBP2 in the regulation of the HSR and seed development of rice
OsHSBP1	Os09g0375100	LOC_Os09g20830	seed development	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	Overall, the present study reveals the role of OsHSBP1 and OsHSBP2 in the regulation of the HSR and seed development of rice
OsHSBP1	Os09g0375100	LOC_Os09g20830	temperature	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	The thermotolerance assay revealed that OsHSBP1 and OsHSBP2 are negative regulators of HSR and involved in acquired thermotolerance but not in basal thermotolerance since their over-expression transgenic lines pre-heated at sublethal temperature, showed significantly decreased seedling survival after heat shock treatment
OsHSBP1	Os09g0375100	LOC_Os09g20830	seedling	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	The thermotolerance assay revealed that OsHSBP1 and OsHSBP2 are negative regulators of HSR and involved in acquired thermotolerance but not in basal thermotolerance since their over-expression transgenic lines pre-heated at sublethal temperature, showed significantly decreased seedling survival after heat shock treatment
OsHSBP1	Os09g0375100	LOC_Os09g20830	seedling	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	Furthermore, antioxidant activity and gene expression of catalase and peroxidase was significantly increased in knock-down transgenic seedlings of OsHSBP1 and OsHSBP2 after heat stress compared with the wild type
OsHSBP1	Os09g0375100	LOC_Os09g20830	seed	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	This report describes the role of OsHSBP1 and OsHSBP2 in the regulation of the HSR and seed development of rice
OsHSBP1	Os09g0375100	LOC_Os09g20830	seed	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	The thermotolerance assay revealed that OsHSBP1 and OsHSBP2 are negative regulators of HSR and involved in acquired thermotolerance but not in basal thermotolerance since their over-expression transgenic lines pre-heated at sublethal temperature, showed significantly decreased seedling survival after heat shock treatment
OsHSBP1	Os09g0375100	LOC_Os09g20830	seed	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	Furthermore, antioxidant activity and gene expression of catalase and peroxidase was significantly increased in knock-down transgenic seedlings of OsHSBP1 and OsHSBP2 after heat stress compared with the wild type
OsHSBP1	Os09g0375100	LOC_Os09g20830	seed	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	Overall, the present study reveals the role of OsHSBP1 and OsHSBP2 in the regulation of the HSR and seed development of rice
OsHSBP2	Os06g0274000	LOC_Os06g16270	seed	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	This report describes the role of OsHSBP1 and OsHSBP2 in the regulation of the HSR and seed development of rice
OsHSBP2	Os06g0274000	LOC_Os06g16270	seed	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	The thermotolerance assay revealed that OsHSBP1 and OsHSBP2 are negative regulators of HSR and involved in acquired thermotolerance but not in basal thermotolerance since their over-expression transgenic lines pre-heated at sublethal temperature, showed significantly decreased seedling survival after heat shock treatment
OsHSBP2	Os06g0274000	LOC_Os06g16270	seed	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	Furthermore, antioxidant activity and gene expression of catalase and peroxidase was significantly increased in knock-down transgenic seedlings of OsHSBP1 and OsHSBP2 after heat stress compared with the wild type
OsHSBP2	Os06g0274000	LOC_Os06g16270	seed	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	Overall, the present study reveals the role of OsHSBP1 and OsHSBP2 in the regulation of the HSR and seed development of rice
OsHSBP2	Os06g0274000	LOC_Os06g16270	temperature	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	The thermotolerance assay revealed that OsHSBP1 and OsHSBP2 are negative regulators of HSR and involved in acquired thermotolerance but not in basal thermotolerance since their over-expression transgenic lines pre-heated at sublethal temperature, showed significantly decreased seedling survival after heat shock treatment
OsHSBP2	Os06g0274000	LOC_Os06g16270	seed development	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	This report describes the role of OsHSBP1 and OsHSBP2 in the regulation of the HSR and seed development of rice
OsHSBP2	Os06g0274000	LOC_Os06g16270	seed development	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	Overall, the present study reveals the role of OsHSBP1 and OsHSBP2 in the regulation of the HSR and seed development of rice
OsHSBP2	Os06g0274000	LOC_Os06g16270	seedling	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	The thermotolerance assay revealed that OsHSBP1 and OsHSBP2 are negative regulators of HSR and involved in acquired thermotolerance but not in basal thermotolerance since their over-expression transgenic lines pre-heated at sublethal temperature, showed significantly decreased seedling survival after heat shock treatment
OsHSBP2	Os06g0274000	LOC_Os06g16270	seedling	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.)	Furthermore, antioxidant activity and gene expression of catalase and peroxidase was significantly increased in knock-down transgenic seedlings of OsHSBP1 and OsHSBP2 after heat stress compared with the wild type
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	cuticle	OsHSD1, a Hydroxysteroid Dehydrogenase, Is Involved in Cuticle Formation and Lipid Homeostasis in Rice	Here we report a wax-deficient rice mutant oshsd1 with reduced epicuticular wax crystals and thicker cuticle membrane
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	cuticle	OsHSD1, a Hydroxysteroid Dehydrogenase, Is Involved in Cuticle Formation and Lipid Homeostasis in Rice	Together, our data indicated that OsHSD1 plays a specialized role in cuticle formation and lipid homeostasis, probably by mediating sterol signaling
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	R protein	OsHSD1, a Hydroxysteroid Dehydrogenase, Is Involved in Cuticle Formation and Lipid Homeostasis in Rice	Furthermore, OsHSD1 mutation resulted in faster protein degradation, but had no effect on the dehydrogenase activity
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	leaf	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	LGF1 regulates C30 primary alcohol synthesis, which is necessary for abundant epicuticular wax platelets, leaf hydrophobicity and gas films on submerged leaves
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	leaf	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	Gene function was verified by a complementation test of LGF1 expressed in the drp7 mutant background, which restored C30 primary alcohol synthesis, wax platelet abundance, leaf hydrophobicity, gas film retention, and underwater photosynthesis
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	submergence	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	The discovery of LGF1 provides an opportunity to better understand variation amongst rice genotypes for gas film retention ability and to target various alleles in breeding for improved submergence tolerance for yield stability in flood-prone areas
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	photosynthesis	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	Gene function was verified by a complementation test of LGF1 expressed in the drp7 mutant background, which restored C30 primary alcohol synthesis, wax platelet abundance, leaf hydrophobicity, gas film retention, and underwater photosynthesis
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	tolerance	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	The discovery of LGF1 provides an opportunity to better understand variation amongst rice genotypes for gas film retention ability and to target various alleles in breeding for improved submergence tolerance for yield stability in flood-prone areas
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	yield	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	The discovery of LGF1 provides an opportunity to better understand variation amongst rice genotypes for gas film retention ability and to target various alleles in breeding for improved submergence tolerance for yield stability in flood-prone areas
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	breeding	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	The discovery of LGF1 provides an opportunity to better understand variation amongst rice genotypes for gas film retention ability and to target various alleles in breeding for improved submergence tolerance for yield stability in flood-prone areas
OsHSD1|LGF1	Os11g0499600	LOC_Os11g30560	submergence tolerance	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	The discovery of LGF1 provides an opportunity to better understand variation amongst rice genotypes for gas film retention ability and to target various alleles in breeding for improved submergence tolerance for yield stability in flood-prone areas
OsHSD2	Os03g0842900	LOC_Os03g62590	grain	OsHSD2 interaction with and phosphorylation by OsCPK21 is essential for lipid metabolism during rice caryopsis development.	 Furthermore, oscpk21 and oshsd2 mutants were generated by the CRISPR/Cas9 technique, and we found that the lipid profiles were drastically changed in both oscpk21 and oshsd2, implying that OsHSD2 phosphorylated by OsCPK21 regulates lipid abundance in caryopsis development, thereby providing a potential target for the genetic improvement of rice grain quality in future lipid-related breeding and biotechnology applications
OsHSD2	Os03g0842900	LOC_Os03g62590	grain quality	OsHSD2 interaction with and phosphorylation by OsCPK21 is essential for lipid metabolism during rice caryopsis development.	 Furthermore, oscpk21 and oshsd2 mutants were generated by the CRISPR/Cas9 technique, and we found that the lipid profiles were drastically changed in both oscpk21 and oshsd2, implying that OsHSD2 phosphorylated by OsCPK21 regulates lipid abundance in caryopsis development, thereby providing a potential target for the genetic improvement of rice grain quality in future lipid-related breeding and biotechnology applications
OsHSD2	Os03g0842900	LOC_Os03g62590	quality	OsHSD2 interaction with and phosphorylation by OsCPK21 is essential for lipid metabolism during rice caryopsis development.	 Furthermore, oscpk21 and oshsd2 mutants were generated by the CRISPR/Cas9 technique, and we found that the lipid profiles were drastically changed in both oscpk21 and oshsd2, implying that OsHSD2 phosphorylated by OsCPK21 regulates lipid abundance in caryopsis development, thereby providing a potential target for the genetic improvement of rice grain quality in future lipid-related breeding and biotechnology applications
OsHSD2	Os03g0842900	LOC_Os03g62590	breeding	OsHSD2 interaction with and phosphorylation by OsCPK21 is essential for lipid metabolism during rice caryopsis development.	 Furthermore, oscpk21 and oshsd2 mutants were generated by the CRISPR/Cas9 technique, and we found that the lipid profiles were drastically changed in both oscpk21 and oshsd2, implying that OsHSD2 phosphorylated by OsCPK21 regulates lipid abundance in caryopsis development, thereby providing a potential target for the genetic improvement of rice grain quality in future lipid-related breeding and biotechnology applications
OsHsf23	Os09g0456800	LOC_Os09g28354	leaf	The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.	RNAi lines of CIGR2 and OsHsf23 similarly exhibited the higher level of granulation in the epidermal cells of leaf sheath inoculated with an avirulent isolate of rice blast fungus
OsHsf23	Os09g0456800	LOC_Os09g28354	sheath	The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.	RNAi lines of CIGR2 and OsHsf23 similarly exhibited the higher level of granulation in the epidermal cells of leaf sheath inoculated with an avirulent isolate of rice blast fungus
OsHsf23	Os09g0456800	LOC_Os09g28354	blast	The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.	RNAi lines of CIGR2 and OsHsf23 similarly exhibited the higher level of granulation in the epidermal cells of leaf sheath inoculated with an avirulent isolate of rice blast fungus
OsHsf23	Os09g0456800	LOC_Os09g28354	blast	The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.	Interestingly, we did not observe altered levels of resistance, suggesting that CIGR2 suppresses excessive cell death in the incompatible interaction with blast fungus via activation of OsHsf23
OsHsf23	Os09g0456800	LOC_Os09g28354	cell death	The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.	Interestingly, we did not observe altered levels of resistance, suggesting that CIGR2 suppresses excessive cell death in the incompatible interaction with blast fungus via activation of OsHsf23
OsHsf23	Os09g0456800	LOC_Os09g28354	transcriptional activator	The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.	We show that a rice GRAS family protein, CIGR2, is a bonafide transcriptional activator, and through this function, targets the B-type heat shock protein-encoding gene OsHsf23 (Os09g0456800)
OsHSF6|OsHsfA2c|OsHsfA6a	Os10g0419300	LOC_Os10g28340	seed	Isolation and characterization of a cDNA encoding two novel heat-shock factor OsHSF6 and OsHSF12 in Oryza sativa L	The results of RT-PCR indicated OsHSF6 gene was expressed immediately after rice plants exposure to heat stress, and the transcription of OsHSF6 gene accumulated primarily in immature seeds, roots and leaves
OsHSF6|OsHsfA2c|OsHsfA6a	Os10g0419300	LOC_Os10g28340	transcription factor	Isolation and characterization of a cDNA encoding two novel heat-shock factor OsHSF6 and OsHSF12 in Oryza sativa L	Analysis of the deduced amino acid sequences revealed that OsHSF6 was a class A heat shock factor (HSF) with all the conserved sequence elements characteristic of heat stress transcription factor, while OsHSF12 was a class B HSF with C-terminal domain (CTD) lacking of AHA motif
OsHSF6|OsHsfA2c|OsHsfA6a	Os10g0419300	LOC_Os10g28340	root	Isolation and characterization of a cDNA encoding two novel heat-shock factor OsHSF6 and OsHSF12 in Oryza sativa L	The results of RT-PCR indicated OsHSF6 gene was expressed immediately after rice plants exposure to heat stress, and the transcription of OsHSF6 gene accumulated primarily in immature seeds, roots and leaves
OsHSF6|OsHsfA2c|OsHsfA6a	Os10g0419300	LOC_Os10g28340	transcription factor	Mapping of domains of heat stress transcription factor OsHsfA6a responsible for its transactivation activity.	Mapping of domains of heat stress transcription factor OsHsfA6a responsible for its transactivation activity.
OsHSF6|OsHsfA2c|OsHsfA6a	Os10g0419300	LOC_Os10g28340	stress	Mapping of domains of heat stress transcription factor OsHsfA6a responsible for its transactivation activity.	Mapping of domains of heat stress transcription factor OsHsfA6a responsible for its transactivation activity.
OsHSFA2d|OsHSF7|HTG3	Os03g0161900	LOC_Os03g06630	transcription factor	OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor	OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor
OsHSFA2d|OsHSF7|HTG3	Os03g0161900	LOC_Os03g06630	temperature	OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor	The OsHSF7 gene was found to be rapidly expressed in high levels in response to temperature, which indicates that it may be involved in heat stress reception and response
OsHSFA2d|OsHSF7|HTG3	Os03g0161900	LOC_Os03g06630	temperature	OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor	Collectively, the results of this study indicate that OsHSF7 might play an important role in the response to high temperature
OsHSFA2d|OsHSF7|HTG3	Os03g0161900	LOC_Os03g06630	temperature	OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor	Specifically, these findings indicate that OsHSF7 may be useful in the production of transgenic monocots that can over-express protective genes such as HSPs in response to heat stress, which will enable such plants to tolerate high temperatures
OsHSFA2d|OsHSF7|HTG3	Os03g0161900	LOC_Os03g06630	temperature	OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor	OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor
OsHSFA2d|OsHSF7|HTG3	Os03g0161900	LOC_Os03g06630	stress	An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.	However, when the plant suffers heat stress, OsHSFA2d is alternatively spliced into a transcriptionally active form, OsHSFA2dI, which participates in the heat stress response (HSR)
OsHSFA2d|OsHSF7|HTG3	Os03g0161900	LOC_Os03g06630	tolerance	A MITE variation-associated heat-inducible isoform of a heat-shock factor confers heat tolerance through regulation of JASMONATE ZIM-DOMAIN genes in rice.	 A miniature inverted-repeat transposable element (MITE) in the promoter of a candidate gene, HTG3 (heat-tolerance gene on chromosome 3), was found to be significantly associated with heat-induced expression of HTG3 and heat tolerance (HT)
OsHSFA2d|OsHSF7|HTG3	Os03g0161900	LOC_Os03g06630	heat tolerance	A MITE variation-associated heat-inducible isoform of a heat-shock factor confers heat tolerance through regulation of JASMONATE ZIM-DOMAIN genes in rice.	 A miniature inverted-repeat transposable element (MITE) in the promoter of a candidate gene, HTG3 (heat-tolerance gene on chromosome 3), was found to be significantly associated with heat-induced expression of HTG3 and heat tolerance (HT)
OsHsfA2e	Os03g0795900	LOC_Os03g58160	temperature	Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis	Among 5 A2-type HSF genes encoded in the rice genome, four genes, including OsHsfA2e, are induced by high temperatures in rice seedlings
OsHsfA2e	Os03g0795900	LOC_Os03g58160	breeding	Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis	These observations suggest that the OsHsfA2e may be useful in molecular breeding designed to improve the environmental stress tolerance of crops
OsHsfA2e	Os03g0795900	LOC_Os03g58160	transcription factor	Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis	The rice cDNA inserted in R04333 encodes OsHsfA2e, a member of the heat stress transcription factors
OsHsfA2e	Os03g0795900	LOC_Os03g58160	transcription factor	Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis	Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis
OsHsfA2e	Os03g0795900	LOC_Os03g58160	seedling	Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis	Among 5 A2-type HSF genes encoded in the rice genome, four genes, including OsHsfA2e, are induced by high temperatures in rice seedlings
OsHSFA3	Os02g0527300	LOC_Os02g32590	drought	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.
OsHSFA3	Os02g0527300	LOC_Os02g32590	drought	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Herein, we cloned the OsHSFA3 from rice and overexpressed it in Arabidopsis thaliana to study its regulatory mechanism of drought tolerance
OsHSFA3	Os02g0527300	LOC_Os02g32590	drought	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Phenotypic and physiological assays of the transgenic Arabidopsis lines showed that overexpression of OsHSFA3 confers drought tolerance by reducing water loss and reactive oxygen species (ROS) levels, whereas it increases abscisic acid (ABA) levels
OsHSFA3	Os02g0527300	LOC_Os02g32590	drought	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Overall, this study reveals that OsHSFA3 improves drought tolerance in Arabidopsis not only by increasing ABA levels, but also by modulating polyamine levels to maintain ROS homeostasis, therefore it could be a strong candidate to develop drought-tolerant rice cultivars
OsHSFA3	Os02g0527300	LOC_Os02g32590	tolerance	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.
OsHSFA3	Os02g0527300	LOC_Os02g32590	tolerance	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Herein, we cloned the OsHSFA3 from rice and overexpressed it in Arabidopsis thaliana to study its regulatory mechanism of drought tolerance
OsHSFA3	Os02g0527300	LOC_Os02g32590	tolerance	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Phenotypic and physiological assays of the transgenic Arabidopsis lines showed that overexpression of OsHSFA3 confers drought tolerance by reducing water loss and reactive oxygen species (ROS) levels, whereas it increases abscisic acid (ABA) levels
OsHSFA3	Os02g0527300	LOC_Os02g32590	tolerance	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Overall, this study reveals that OsHSFA3 improves drought tolerance in Arabidopsis not only by increasing ABA levels, but also by modulating polyamine levels to maintain ROS homeostasis, therefore it could be a strong candidate to develop drought-tolerant rice cultivars
OsHSFA3	Os02g0527300	LOC_Os02g32590	ABA	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Overall, this study reveals that OsHSFA3 improves drought tolerance in Arabidopsis not only by increasing ABA levels, but also by modulating polyamine levels to maintain ROS homeostasis, therefore it could be a strong candidate to develop drought-tolerant rice cultivars
OsHSFA3	Os02g0527300	LOC_Os02g32590	drought tolerance	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.
OsHSFA3	Os02g0527300	LOC_Os02g32590	drought tolerance	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Herein, we cloned the OsHSFA3 from rice and overexpressed it in Arabidopsis thaliana to study its regulatory mechanism of drought tolerance
OsHSFA3	Os02g0527300	LOC_Os02g32590	drought tolerance	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Phenotypic and physiological assays of the transgenic Arabidopsis lines showed that overexpression of OsHSFA3 confers drought tolerance by reducing water loss and reactive oxygen species (ROS) levels, whereas it increases abscisic acid (ABA) levels
OsHSFA3	Os02g0527300	LOC_Os02g32590	drought tolerance	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Overall, this study reveals that OsHSFA3 improves drought tolerance in Arabidopsis not only by increasing ABA levels, but also by modulating polyamine levels to maintain ROS homeostasis, therefore it could be a strong candidate to develop drought-tolerant rice cultivars
OsHSFA3	Os02g0527300	LOC_Os02g32590	abscisic acid	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.
OsHSFA3	Os02g0527300	LOC_Os02g32590	abscisic acid	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Phenotypic and physiological assays of the transgenic Arabidopsis lines showed that overexpression of OsHSFA3 confers drought tolerance by reducing water loss and reactive oxygen species (ROS) levels, whereas it increases abscisic acid (ABA) levels
OsHSFA3	Os02g0527300	LOC_Os02g32590	ABA	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Overall, this study reveals that OsHSFA3 improves drought tolerance in Arabidopsis not only by increasing ABA levels, but also by modulating polyamine levels to maintain ROS homeostasis, therefore it could be a strong candidate to develop drought-tolerant rice cultivars
OsHSFA3	Os02g0527300	LOC_Os02g32590	reactive oxygen species	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Phenotypic and physiological assays of the transgenic Arabidopsis lines showed that overexpression of OsHSFA3 confers drought tolerance by reducing water loss and reactive oxygen species (ROS) levels, whereas it increases abscisic acid (ABA) levels
OsHSFA3	Os02g0527300	LOC_Os02g32590	water loss	Rice OsHSFA3 Gene Improves Drought Tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Phenotypic and physiological assays of the transgenic Arabidopsis lines showed that overexpression of OsHSFA3 confers drought tolerance by reducing water loss and reactive oxygen species (ROS) levels, whereas it increases abscisic acid (ABA) levels
OsHsfA7	Os01g0571300	LOC_Os01g39020	seedling	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice	These findings indicate that over-expression of OsHsfA7 gene can increase tolerance to salt and drought stresses in rice seedlings
OsHsfA7	Os01g0571300	LOC_Os01g39020	drought	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice	These findings indicate that over-expression of OsHsfA7 gene can increase tolerance to salt and drought stresses in rice seedlings
OsHsfA7	Os01g0571300	LOC_Os01g39020	drought	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice
OsHsfA7	Os01g0571300	LOC_Os01g39020	drought tolerance	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice
OsHsfA7	Os01g0571300	LOC_Os01g39020	salt	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice	Under salt treatment, over-expressing OsHsfA7 rice showed alleviative appearance of damage symptoms and higher survival rate, leaf electrical conductivity and malondialdehyde content of transgenic plants were lower than those of wild type plants
OsHsfA7	Os01g0571300	LOC_Os01g39020	salt	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice	These findings indicate that over-expression of OsHsfA7 gene can increase tolerance to salt and drought stresses in rice seedlings
OsHsfA7	Os01g0571300	LOC_Os01g39020	salt	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice
OsHsfA7	Os01g0571300	LOC_Os01g39020	leaf	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice	Under salt treatment, over-expressing OsHsfA7 rice showed alleviative appearance of damage symptoms and higher survival rate, leaf electrical conductivity and malondialdehyde content of transgenic plants were lower than those of wild type plants
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt stress	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	These results suggest that OsHsfB2b functions as a negative regulator in response to drought and salt stresses in rice, with its existing B3 repression domain (BRD) that might be necessary for the repressive activity
OsHsfB2b	Os08g0546800	LOC_Os08g43334	cold stress	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Expression of OsHsfB2b was strongly induced by heat, salt, abscisic acid (ABA) and polyethylene glycol (PEG) treatments but was almost not affected by cold stress
OsHsfB2b	Os08g0546800	LOC_Os08g43334	ethylene	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Expression of OsHsfB2b was strongly induced by heat, salt, abscisic acid (ABA) and polyethylene glycol (PEG) treatments but was almost not affected by cold stress
OsHsfB2b	Os08g0546800	LOC_Os08g43334	ABA	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	KEY MESSAGE: Expression of OsHsfB2b was strongly induced by heat, salt, ABA and PEG treatments
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt tolerance	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Drought and salt tolerances were significantly decreased by OsHsfB2b overexpression, but were enhanced by RNA interference
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt tolerance	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Drought and salt tolerances were significantly decreased in OsHsfB2b-overexpressing transgenic rice, but were enhanced in the OsHsfB2b-RNAi transgenic rice
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt tolerance	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice
OsHsfB2b	Os08g0546800	LOC_Os08g43334	drought	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Drought and salt tolerances were significantly decreased by OsHsfB2b overexpression, but were enhanced by RNA interference
OsHsfB2b	Os08g0546800	LOC_Os08g43334	drought	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Drought and salt tolerances were significantly decreased in OsHsfB2b-overexpressing transgenic rice, but were enhanced in the OsHsfB2b-RNAi transgenic rice
OsHsfB2b	Os08g0546800	LOC_Os08g43334	drought	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Under drought stress, the OsHsfB2b-overexpressing transgenic rice exhibited increased relative electrical conductivity (REC) and content of malondialdehyde (MDA) and decreased proline content compared with the wild type, while the lower REC and MDA content and increased proline content were found in the OsHsfB2b-RNAi transgenic rice
OsHsfB2b	Os08g0546800	LOC_Os08g43334	drought	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	These results suggest that OsHsfB2b functions as a negative regulator in response to drought and salt stresses in rice, with its existing B3 repression domain (BRD) that might be necessary for the repressive activity
OsHsfB2b	Os08g0546800	LOC_Os08g43334	drought	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	KEY MESSAGE: Expression of OsHsfB2b was strongly induced by heat, salt, ABA and PEG treatments
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Drought and salt tolerances were significantly decreased by OsHsfB2b overexpression, but were enhanced by RNA interference
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Expression of OsHsfB2b was strongly induced by heat, salt, abscisic acid (ABA) and polyethylene glycol (PEG) treatments but was almost not affected by cold stress
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Drought and salt tolerances were significantly decreased in OsHsfB2b-overexpressing transgenic rice, but were enhanced in the OsHsfB2b-RNAi transgenic rice
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	These results suggest that OsHsfB2b functions as a negative regulator in response to drought and salt stresses in rice, with its existing B3 repression domain (BRD) that might be necessary for the repressive activity
OsHsfB2b	Os08g0546800	LOC_Os08g43334	salt	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice
OsHsfB4b	Os07g0640900	LOC_Os07g44690	resistance	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 Over-expression of the OsHsfB4b gene in Arabidopsis and rice can increase the resistance to drought stress
OsHsfB4b	Os07g0640900	LOC_Os07g44690	drought	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.
OsHsfB4b	Os07g0640900	LOC_Os07g44690	drought	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 Over-expression of the OsHsfB4b gene in Arabidopsis and rice can increase the resistance to drought stress
OsHsfB4b	Os07g0640900	LOC_Os07g44690	stress	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 Both OsHsfB4b and OsHsfB4d showed strong responses to the stress treatment
OsHsfB4b	Os07g0640900	LOC_Os07g44690	stress	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 Over-expression of the OsHsfB4b gene in Arabidopsis and rice can increase the resistance to drought stress
OsHsfB4b	Os07g0640900	LOC_Os07g44690	stress	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 This study provides a basis for understanding the function and evolutionary history of the OsHsf gene family, enriching our knowledge of understanding the biological functions of OsHsfB4b and OsHsfB4d genes involved in the stress response in rice, and also reveals the potential value of OsHsfB4b in rice environmental adaptation improvement
OsHsfB4b	Os07g0640900	LOC_Os07g44690	drought stress	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 Over-expression of the OsHsfB4b gene in Arabidopsis and rice can increase the resistance to drought stress
OsHsfB4b	Os07g0640900	LOC_Os07g44690	tolerance	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.
OsHsfB4b	Os07g0640900	LOC_Os07g44690	nucleus	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 The results of subcellular localization showed that the OsHsfB4b protein was in the nucleus whereas the OsHsfB4d protein was located in both the nucleus and cytoplasm
OsHsfB4b	Os07g0640900	LOC_Os07g44690	drought tolerance	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.
OsHsfB4b	Os07g0640900	LOC_Os07g44690	cytoplasm	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 The results of subcellular localization showed that the OsHsfB4b protein was in the nucleus whereas the OsHsfB4d protein was located in both the nucleus and cytoplasm
OsHsfB4b	Os07g0640900	LOC_Os07g44690	stress response	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 This study provides a basis for understanding the function and evolutionary history of the OsHsf gene family, enriching our knowledge of understanding the biological functions of OsHsfB4b and OsHsfB4d genes involved in the stress response in rice, and also reveals the potential value of OsHsfB4b in rice environmental adaptation improvement
OsHsfB4d	Os03g0366800	LOC_Os03g25120	resistance	OsHsfB4d Binds the Promoter and Regulates the Expression of OsHsp18.0-CI to Resistant Against Xanthomonas Oryzae.	 Rice plants overexpressing OsHsfB4d exhibited enhanced resistance to RS105 and PXO99a as well as increased expression of OsHsp18
OsHsfB4d	Os03g0366800	LOC_Os03g25120	 xoo 	OsHsfB4d Binds the Promoter and Regulates the Expression of OsHsp18.0-CI to Resistant Against Xanthomonas Oryzae.	 OsHsfB4d is upregulated post inoculation by either the Xoc strain RS105 or Xoo strain PXO99a in Zhonghua 11 (wild type, ZH11) as well as in OsHsp18
OsHsfB4d	Os03g0366800	LOC_Os03g25120	resistant	OsHsfB4d Binds the Promoter and Regulates the Expression of OsHsp18.0-CI to Resistant Against Xanthomonas Oryzae.	OsHsfB4d Binds the Promoter and Regulates the Expression of OsHsp18.0-CI to Resistant Against Xanthomonas Oryzae.
OsHsfB4d	Os03g0366800	LOC_Os03g25120	stress	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 Both OsHsfB4b and OsHsfB4d showed strong responses to the stress treatment
OsHsfB4d	Os03g0366800	LOC_Os03g25120	stress	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 This study provides a basis for understanding the function and evolutionary history of the OsHsf gene family, enriching our knowledge of understanding the biological functions of OsHsfB4b and OsHsfB4d genes involved in the stress response in rice, and also reveals the potential value of OsHsfB4b in rice environmental adaptation improvement
OsHsfB4d	Os03g0366800	LOC_Os03g25120	nucleus	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 The results of subcellular localization showed that the OsHsfB4b protein was in the nucleus whereas the OsHsfB4d protein was located in both the nucleus and cytoplasm
OsHsfB4d	Os03g0366800	LOC_Os03g25120	cytoplasm	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 The results of subcellular localization showed that the OsHsfB4b protein was in the nucleus whereas the OsHsfB4d protein was located in both the nucleus and cytoplasm
OsHsfB4d	Os03g0366800	LOC_Os03g25120	stress response	OsHsfB4b Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	 This study provides a basis for understanding the function and evolutionary history of the OsHsf gene family, enriching our knowledge of understanding the biological functions of OsHsfB4b and OsHsfB4d genes involved in the stress response in rice, and also reveals the potential value of OsHsfB4b in rice environmental adaptation improvement
OsHsfC1b	Os01g0733200	LOC_Os01g53220	homeostasis	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	Impaired function of OsHsfC1b in the hsfc1b mutant and the amiRNA lines led to decreased salt and osmotic stress tolerance, increased sensitivity to ABA, and temporal misregulation of salt-responsive genes involved in signalling and ion homeostasis
OsHsfC1b	Os01g0733200	LOC_Os01g53220	salt stress	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	METHODOLOGY: We analysed the expression of OsHsfC1b in the rice japonica cultivars Dongjin and Nipponbare exposed to salt stress as well as after mannitol, abscisic acid (ABA) and H(2)O(2) treatment
OsHsfC1b	Os01g0733200	LOC_Os01g53220	salt stress	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	CONCLUSIONS: OsHsfC1b plays a role in ABA-mediated salt stress tolerance in rice
OsHsfC1b	Os01g0733200	LOC_Os01g53220	transcription factor	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	Here we characterized the function of the OsHsfC1b (Os01g53220) transcription factor from rice
OsHsfC1b	Os01g0733200	LOC_Os01g53220	transcription factor	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	Transient expression of OsHsfC1b fused to GFP in protoplasts revealed nuclear localization of the transcription factor
OsHsfC1b	Os01g0733200	LOC_Os01g53220	transcription factor	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica
OsHsfC1b	Os01g0733200	LOC_Os01g53220	ABA	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	For functional characterization of OsHsfC1b, we analysed the physiological response of a T-DNA insertion line (hsfc1b) and two artificial micro-RNA (amiRNA) knock-down lines to salt, mannitol and ABA treatment
OsHsfC1b	Os01g0733200	LOC_Os01g53220	growth	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	Furthermore, OsHsfC1b is involved in the response to osmotic stress and is required for plant growth under non-stress conditions
OsHsfC1b	Os01g0733200	LOC_Os01g53220	salt	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	METHODOLOGY: We analysed the expression of OsHsfC1b in the rice japonica cultivars Dongjin and Nipponbare exposed to salt stress as well as after mannitol, abscisic acid (ABA) and H(2)O(2) treatment
OsHsfC1b	Os01g0733200	LOC_Os01g53220	salt	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	For functional characterization of OsHsfC1b, we analysed the physiological response of a T-DNA insertion line (hsfc1b) and two artificial micro-RNA (amiRNA) knock-down lines to salt, mannitol and ABA treatment
OsHsfC1b	Os01g0733200	LOC_Os01g53220	salt	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	PRINCIPAL RESULTS: Expression of OsHsfC1b was induced by salt, mannitol and ABA, but not by H(2)O(2)
OsHsfC1b	Os01g0733200	LOC_Os01g53220	salt	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	Impaired function of OsHsfC1b in the hsfc1b mutant and the amiRNA lines led to decreased salt and osmotic stress tolerance, increased sensitivity to ABA, and temporal misregulation of salt-responsive genes involved in signalling and ion homeostasis
OsHsfC1b	Os01g0733200	LOC_Os01g53220	salt	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	CONCLUSIONS: OsHsfC1b plays a role in ABA-mediated salt stress tolerance in rice
OsHsfC1b	Os01g0733200	LOC_Os01g53220	salt	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica
OsHsfC1b	Os01g0733200	LOC_Os01g53220	salt tolerance	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica
OsHSP17.0	Os01g0136200	LOC_Os01g04380	salt	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice
OsHSP17.0	Os01g0136200	LOC_Os01g04380	salt tolerance	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice
OsHSP17.0	Os01g0136200	LOC_Os01g04380	drought	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	defense	A Class II small heat shock protein OsHsp18.0 plays positive roles in both biotic and abiotic defense responses in rice.	A Class II small heat shock protein OsHsp18.0 plays positive roles in both biotic and abiotic defense responses in rice.
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	defense response	A Class II small heat shock protein OsHsp18.0 plays positive roles in both biotic and abiotic defense responses in rice.	A Class II small heat shock protein OsHsp18.0 plays positive roles in both biotic and abiotic defense responses in rice.
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	resistance	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	However, the role of OsMSR3 in the Cu stress response of plants remains unclear, and, thus, this study aimed to elucidate this phenomenon in Arabidopsis thaliana, to further understand the role of small HSPs (sHSPs) in heavy metal resistance in plants
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	defense	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	Collectively, our findings suggest that OsMSR3 played an important role in regulating Cu tolerance in plants and improved their tolerance to Cu stress through enhanced activation of antioxidative defense mechanisms and positive regulation of ABA-responsive gene expression
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	tolerance	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	A previous study has shown that OsMSR3 expression improves the tolerance of Arabidopsis to cadmium stress
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	tolerance	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	thaliana expressing OsMSR3 showed higher tolerance to Cu, longer roots, higher survival rates, biomass, and relative water content, and accumulated more Cu, abscisic acid (ABA), hydrogen peroxide, chlorophyll, carotenoid, superoxide dismutase, and peroxidase than wild-type plants did
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	tolerance	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	Collectively, our findings suggest that OsMSR3 played an important role in regulating Cu tolerance in plants and improved their tolerance to Cu stress through enhanced activation of antioxidative defense mechanisms and positive regulation of ABA-responsive gene expression
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	stress	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	A previous study has shown that OsMSR3 expression improves the tolerance of Arabidopsis to cadmium stress
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	stress	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	However, the role of OsMSR3 in the Cu stress response of plants remains unclear, and, thus, this study aimed to elucidate this phenomenon in Arabidopsis thaliana, to further understand the role of small HSPs (sHSPs) in heavy metal resistance in plants
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	stress	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	Collectively, our findings suggest that OsMSR3 played an important role in regulating Cu tolerance in plants and improved their tolerance to Cu stress through enhanced activation of antioxidative defense mechanisms and positive regulation of ABA-responsive gene expression
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	abscisic acid	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	thaliana expressing OsMSR3 showed higher tolerance to Cu, longer roots, higher survival rates, biomass, and relative water content, and accumulated more Cu, abscisic acid (ABA), hydrogen peroxide, chlorophyll, carotenoid, superoxide dismutase, and peroxidase than wild-type plants did
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	cadmium	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	A previous study has shown that OsMSR3 expression improves the tolerance of Arabidopsis to cadmium stress
OsHsp18.0-CI|Oshsp18.0|OsMSR3	Os03g0267000	LOC_Os03g16030	stress response	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in Arabidopsis thaliana.	However, the role of OsMSR3 in the Cu stress response of plants remains unclear, and, thus, this study aimed to elucidate this phenomenon in Arabidopsis thaliana, to further understand the role of small HSPs (sHSPs) in heavy metal resistance in plants
OsHSP18.2|Oshsp18.0-CII	Os01g0184100	LOC_Os01g08860	seed	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.
OsHSP18.2|Oshsp18.0-CII	Os01g0184100	LOC_Os01g08860	seedling	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.
OsHSP18.2|Oshsp18.0-CII	Os01g0184100	LOC_Os01g08860	abiotic stress	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.
OsHSP18.2|Oshsp18.0-CII	Os01g0184100	LOC_Os01g08860	biotic stress	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.
OsHSP23.7	Os12g0569700	LOC_Os12g38180	salt	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice
OsHSP23.7	Os12g0569700	LOC_Os12g38180	salt tolerance	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice
OsHSP23.7	Os12g0569700	LOC_Os12g38180	drought	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice
Oshsp26	Os03g0245800	LOC_Os03g14180	temperature	Expression of the chloroplast-localized small heat shock protein by oxidative stress in rice	The Oshsp26 gene was expressed following heat stress: the transcript level was highest when rice leaves were treated at high temperatures for 2h at 42 degrees C, and the transcripts became detectable after 20min and reached a maximum level after 2h
Oshsp26	Os03g0245800	LOC_Os03g14180	chloroplast	Expression of the chloroplast-localized small heat shock protein by oxidative stress in rice	Nakdong) cDNA clone, Oshsp26, encoding the chloroplast-localized small heat shock protein (smHSP) was isolated
Oshsp26	Os03g0245800	LOC_Os03g14180	chloroplast	Expression of the chloroplast-localized small heat shock protein by oxidative stress in rice	Since MV treatment in the light leads to the generation of H(2)O(2) inside the chloroplast, it is likely that H(2)O(2) by itself acts to induce the expression of the Oshsp26 gene
Oshsp26	Os03g0245800	LOC_Os03g14180	chloroplast	Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue	We previously isolated and characterized a rice cDNA clone, Oshsp26, encoding a chloroplast-localized small heat shock protein that is expressed following oxidative or heat stress
Oshsp26	Os03g0245800	LOC_Os03g14180	chloroplast	Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue	Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue
Oshsp26	Os03g0245800	LOC_Os03g14180	oxidative	Expression of the chloroplast-localized small heat shock protein by oxidative stress in rice	It was also found that the Oshsp26 gene was expressed following oxidative stress even in the absence of heat stress
Oshsp26	Os03g0245800	LOC_Os03g14180	oxidative	Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue	We previously isolated and characterized a rice cDNA clone, Oshsp26, encoding a chloroplast-localized small heat shock protein that is expressed following oxidative or heat stress
Oshsp26	Os03g0245800	LOC_Os03g14180	oxidative	Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue	These results suggest that the OsHSP26 protein plays an important role in the protection of PSII during heat and oxidative stress in vivo
Oshsp26	Os03g0245800	LOC_Os03g14180	oxidative	Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue	Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue
OsHSP50.2	None	None	drought	Overexpressing heat-shock protein OsHSP50.2 improves drought tolerance in rice.	Overexpressing heat-shock protein OsHSP50.2 improves drought tolerance in rice.
OsHSP50.2	None	None	tolerance	Overexpressing heat-shock protein OsHSP50.2 improves drought tolerance in rice.	Overexpressing heat-shock protein OsHSP50.2 improves drought tolerance in rice.
OsHSP50.2	None	None	drought tolerance	Overexpressing heat-shock protein OsHSP50.2 improves drought tolerance in rice.	Overexpressing heat-shock protein OsHSP50.2 improves drought tolerance in rice.
OsHsp70CP1	Os05g0303000	LOC_Os05g23740	seedling	Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions	At the seedling stage, we identified heat-sensitive mutants that carried T-DNA inserted into a heat shock protein 70 gene, OsHsp70CP1
OsHsp70CP1	Os05g0303000	LOC_Os05g23740	chloroplast	Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions	This indicated that OsHsp70CP1 is essential for chloroplast differentiation from the proplastids under high temperatures
OsHsp70CP1	Os05g0303000	LOC_Os05g23740	chloroplast	Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions	Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions
OsHsp70CP1	Os05g0303000	LOC_Os05g23740	temperature	Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions	This indicated that OsHsp70CP1 is essential for chloroplast differentiation from the proplastids under high temperatures
OsHsp70CP1	Os05g0303000	LOC_Os05g23740	temperature	Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions	Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	transporter	OsHT, a rice gene encoding for a plasma-membrane localized histidine transporter	Using a degenerative probe designed according to the most conservative region of a known Lys- and His-specific amino acid transporter (LHT1) from Arabidopsis, we isolated a full-length cDNA named OsHT (histidine transporter of Oryza sativa L
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	transporter	OsHT, a rice gene encoding for a plasma-membrane localized histidine transporter	Multiple sequence alignments showed that OsHT shares a high degree of sequence conservation at the deduced amino acid level with the Arabidopsis LHT1 and six putative lysine and histidine transporters
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	transporter	OsHT, a rice gene encoding for a plasma-membrane localized histidine transporter	Functional complementation experiments demonstrated that OsHT was able to work as a histidine transporter in Saccharomyces cerevisiae, suggesting that OsHT is a gene that encodes for a histidine transporter from rice
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	transporter	OsHT, a rice gene encoding for a plasma-membrane localized histidine transporter	OsHT, a rice gene encoding for a plasma-membrane localized histidine transporter
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	leaf	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 QRT-PCR analysis indicated that OsLHT1 was expressed in various rice organs, including root, stem, flag leaf, flag leaf sheath and young panicle
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	root	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 Two oslht1 mutants were generated using CRISPR/Cas9 genome-editing technology, and the loss-of-function of OsLHT1 inhibited rice root and shoot growth, thereby markedly reducing grain yields
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	growth	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 The aims of this study are to analyze the substrate selectivity of OsLHT1 and influence of its disruption on rice growth and fecundity
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	growth	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	Our results indicated that OsLHT1 is an amino acid transporter with wide substrate specificity and with preference for neutral and acidic amino acids, and disruption of OsLHT1 function markedly inhibited rice growth and fecundity
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	shoot	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 Two oslht1 mutants were generated using CRISPR/Cas9 genome-editing technology, and the loss-of-function of OsLHT1 inhibited rice root and shoot growth, thereby markedly reducing grain yields
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	panicle	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 QRT-PCR analysis indicated that OsLHT1 was expressed in various rice organs, including root, stem, flag leaf, flag leaf sheath and young panicle
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 Two oslht1 mutants were generated using CRISPR/Cas9 genome-editing technology, and the loss-of-function of OsLHT1 inhibited rice root and shoot growth, thereby markedly reducing grain yields
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	sheath	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 QRT-PCR analysis indicated that OsLHT1 was expressed in various rice organs, including root, stem, flag leaf, flag leaf sheath and young panicle
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain yield	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 Two oslht1 mutants were generated using CRISPR/Cas9 genome-editing technology, and the loss-of-function of OsLHT1 inhibited rice root and shoot growth, thereby markedly reducing grain yields
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	transporter	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 OsLHT1 (Lysine/Histidine transporter) has been previously reported as a histidine transporter in yeast, but its substrate profile and function in planta are unclear
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	transporter	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 Transient expression in rice protoplast suggested OsLHT1 was localized to the plasma membrane, which is consistent with its function as an amino acid transporter
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	transporter	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	Our results indicated that OsLHT1 is an amino acid transporter with wide substrate specificity and with preference for neutral and acidic amino acids, and disruption of OsLHT1 function markedly inhibited rice growth and fecundity
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	plasma membrane	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 Transient expression in rice protoplast suggested OsLHT1 was localized to the plasma membrane, which is consistent with its function as an amino acid transporter
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	amino acid transporter	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	 Transient expression in rice protoplast suggested OsLHT1 was localized to the plasma membrane, which is consistent with its function as an amino acid transporter
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	amino acid transporter	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	Our results indicated that OsLHT1 is an amino acid transporter with wide substrate specificity and with preference for neutral and acidic amino acids, and disruption of OsLHT1 function markedly inhibited rice growth and fecundity
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	leaf	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 OsLHT1 is localized throughout the rice root, including root hairs, epidermis, cortex and stele, and to the leaf vasculature
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	root	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 OsLHT1 is localized throughout the rice root, including root hairs, epidermis, cortex and stele, and to the leaf vasculature
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	root	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 Knockout of OsLHT1 in japonica resulted in reduced root uptake of amino acids
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	root	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 15 N-ammonium uptake and subsequently the delivery of root synthesized amino acids to Oslht1 shoots were also significantly decreased, which was accompanied by reduced shoot growth
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	root	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 These results together provide evidence that OsLHT1 functions in both root uptake and root to shoot allocation of a broad spectrum of amino acids in rice
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	growth	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 When expressed in yeast, OsLHT1 supported cell growth on a broad spectrum of amino acids and effectively transported aspartate, asparagine and glutamate
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	growth	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 15 N-ammonium uptake and subsequently the delivery of root synthesized amino acids to Oslht1 shoots were also significantly decreased, which was accompanied by reduced shoot growth
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	shoot	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 15 N-ammonium uptake and subsequently the delivery of root synthesized amino acids to Oslht1 shoots were also significantly decreased, which was accompanied by reduced shoot growth
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	shoot	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 These results together provide evidence that OsLHT1 functions in both root uptake and root to shoot allocation of a broad spectrum of amino acids in rice
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	root hair	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	 OsLHT1 is localized throughout the rice root, including root hairs, epidermis, cortex and stele, and to the leaf vasculature
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	nitrogen	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	leaf	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 The concentrations of both total N and free amino acids in the flag leaf were similar at anthesis between Oslht1 lines and WT while significantly higher in the mutants than WT at maturation
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	vascular bundle	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 OsLHT1 is expressed in vascular bundles of leaves, rachis, and flowering organs
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	panicle	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Oslht1 plants showed lower panicle length and seed setting rate, especially lower grain number per panicle and total grain weight
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 In this study, we planted knockout mutant lines of OsLHT1 together wild-type (WT) in paddy field for evaluating OsLHT1 function in N redistribution and grain production
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Oslht1 plants showed lower panicle length and seed setting rate, especially lower grain number per panicle and total grain weight
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Taken together, we conclude that OsLHT1 plays critical role in the translocation of amino acids from vegetative to reproductive organs for grain yield and quality of nutrition and functionality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain number	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Oslht1 plants showed lower panicle length and seed setting rate, especially lower grain number per panicle and total grain weight
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	seed	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Oslht1 plants showed lower panicle length and seed setting rate, especially lower grain number per panicle and total grain weight
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	starch	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 The Oslht1 seeds contained higher proteins and most of the essential free amino acids, similar total starch but less amylose with lower paste viscosity than WT seeds
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain yield	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain yield	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Taken together, we conclude that OsLHT1 plays critical role in the translocation of amino acids from vegetative to reproductive organs for grain yield and quality of nutrition and functionality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	yield	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	yield	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Taken together, we conclude that OsLHT1 plays critical role in the translocation of amino acids from vegetative to reproductive organs for grain yield and quality of nutrition and functionality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	vegetative	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Taken together, we conclude that OsLHT1 plays critical role in the translocation of amino acids from vegetative to reproductive organs for grain yield and quality of nutrition and functionality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	R protein	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 The Oslht1 seeds contained higher proteins and most of the essential free amino acids, similar total starch but less amylose with lower paste viscosity than WT seeds
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	reproductive	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Taken together, we conclude that OsLHT1 plays critical role in the translocation of amino acids from vegetative to reproductive organs for grain yield and quality of nutrition and functionality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	quality	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	quality	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Taken together, we conclude that OsLHT1 plays critical role in the translocation of amino acids from vegetative to reproductive organs for grain yield and quality of nutrition and functionality
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	grain weight	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Oslht1 plants showed lower panicle length and seed setting rate, especially lower grain number per panicle and total grain weight
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	flowering	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 OsLHT1 is expressed in vascular bundles of leaves, rachis, and flowering organs
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	panicle length	Rice OsLHT1 Functions in Leaf-to-Panicle Nitrogen Allocation for Grain Yield and Quality	 Oslht1 plants showed lower panicle length and seed setting rate, especially lower grain number per panicle and total grain weight
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	leaf	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	leaf	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 In comparison to wild type, Oslht1 mutant lines showed sustained rusty red spots on fully mature leaf blades irrespective of N supply levels
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	leaf	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 Notably, no relationship between the severity of leaf rusty red spots and concentration of total N or amino acids was found in Oslht1 mutants at different developmental stages
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	leaf	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 OsLHT1 inactivation dramatically prevented the leaf invasion of M
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	leaf senescence	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	senescence	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	senescence	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 In this study, we found that rice amino acid transporter gene OsLHT1 was expressed in leaves and up-regulated by maturing, N starvation and inoculation of blast fungus and N supply-dependent premature senescence of leaves at vegetative growth stage
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	growth	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 In this study, we found that rice amino acid transporter gene OsLHT1 was expressed in leaves and up-regulated by maturing, N starvation and inoculation of blast fungus and N supply-dependent premature senescence of leaves at vegetative growth stage
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	resistance	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	defense	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 Disruption of OsLHT1 altered transport and metabolism of amino acids and and salicylic acid-related defense genes and production of jasmonic acid and salicylic acid, accumulation of reactive oxygen species
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	vegetative	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 In this study, we found that rice amino acid transporter gene OsLHT1 was expressed in leaves and up-regulated by maturing, N starvation and inoculation of blast fungus and N supply-dependent premature senescence of leaves at vegetative growth stage
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	salicylic acid	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 Disruption of OsLHT1 altered transport and metabolism of amino acids and and salicylic acid-related defense genes and production of jasmonic acid and salicylic acid, accumulation of reactive oxygen species
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	blast	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	blast	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 In this study, we found that rice amino acid transporter gene OsLHT1 was expressed in leaves and up-regulated by maturing, N starvation and inoculation of blast fungus and N supply-dependent premature senescence of leaves at vegetative growth stage
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	transporter	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	transporter	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 In this study, we found that rice amino acid transporter gene OsLHT1 was expressed in leaves and up-regulated by maturing, N starvation and inoculation of blast fungus and N supply-dependent premature senescence of leaves at vegetative growth stage
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	jasmonic	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 Disruption of OsLHT1 altered transport and metabolism of amino acids and and salicylic acid-related defense genes and production of jasmonic acid and salicylic acid, accumulation of reactive oxygen species
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	jasmonic acid	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 Disruption of OsLHT1 altered transport and metabolism of amino acids and and salicylic acid-related defense genes and production of jasmonic acid and salicylic acid, accumulation of reactive oxygen species
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	reactive oxygen species	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 Disruption of OsLHT1 altered transport and metabolism of amino acids and and salicylic acid-related defense genes and production of jasmonic acid and salicylic acid, accumulation of reactive oxygen species
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	amino acid transporter	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.
OsHT|OsLHT1	Os08g0127100	LOC_Os08g03350	amino acid transporter	Knockout of amino acid transporter gene OsLHT1 accelerates leaf senescence and enhances resistance to rice blast fungus.	 In this study, we found that rice amino acid transporter gene OsLHT1 was expressed in leaves and up-regulated by maturing, N starvation and inoculation of blast fungus and N supply-dependent premature senescence of leaves at vegetative growth stage
OsHTAS	Os09g0323100	LOC_Os09g15430	temperature	A dominant major locus in chromosome 9 of rice (Oryza sativa L.) confers tolerance to 48 degrees C high temperature at seedling stage	Further dynamic expression analysis demonstrated that OsHTAS ( a ) was actively responsive to 45 degrees C high temperature stress compared with the OsHTAS ( b ) allele
OsHTAS	Os09g0323100	LOC_Os09g15430	seedling	A dominant major locus in chromosome 9 of rice (Oryza sativa L.) confers tolerance to 48 degrees C high temperature at seedling stage	The genetic analysis of F(1) and F(2) offspring derived from the cross between HT54 and HT13, a heat-sensitive breeding line, reveals that the heat tolerance of HT54 was controlled by a dominant major locus, which has been designated as OsHTAS (Oryza sativa heat tolerance at seedling stage)
OsHTAS	Os09g0323100	LOC_Os09g15430	breeding	A dominant major locus in chromosome 9 of rice (Oryza sativa L.) confers tolerance to 48 degrees C high temperature at seedling stage	The genetic analysis of F(1) and F(2) offspring derived from the cross between HT54 and HT13, a heat-sensitive breeding line, reveals that the heat tolerance of HT54 was controlled by a dominant major locus, which has been designated as OsHTAS (Oryza sativa heat tolerance at seedling stage)
OsHTAS	Os09g0323100	LOC_Os09g15430	heat tolerance	The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances Heat Tolerance by Promoting H2O2-Induced Stomatal Closure in Rice	The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances Heat Tolerance by Promoting H2O2-Induced Stomatal Closure in Rice
OsHTAS	Os09g0323100	LOC_Os09g15430	stomatal	The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances Heat Tolerance by Promoting H2O2-Induced Stomatal Closure in Rice	The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances Heat Tolerance by Promoting H2O2-Induced Stomatal Closure in Rice
OsHTAS	Os09g0323100	LOC_Os09g15430	stress	The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances Heat Tolerance by Promoting H2O2-Induced Stomatal Closure in Rice	OsHTAS was responsive to multiple stresses and strongly induced by exogenous ABA
OsHTAS	Os09g0323100	LOC_Os09g15430	ABA	The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances Heat Tolerance by Promoting H2O2-Induced Stomatal Closure in Rice	OsHTAS was responsive to multiple stresses and strongly induced by exogenous ABA
OsHTAS	Os09g0323100	LOC_Os09g15430	ABA biosynthesis	The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances Heat Tolerance by Promoting H2O2-Induced Stomatal Closure in Rice	OsHTAS modulated H2O2 accumulation of shoots thus altered the stomatal aperture status of rice leaves, and promoted ABA biosynthesis
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	height	Identification and functional analysis of the MOC1 interacting protein 1	The overexpression of MIP1 resulted in enhanced tillering and reduced plant height
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	tillering	Identification and functional analysis of the MOC1 interacting protein 1	The overexpression of MIP1 resulted in enhanced tillering and reduced plant height
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	tillering	Identification and functional analysis of the MOC1 interacting protein 1	In-depth characterization of the context of MIP1 and MOC1 would further our understanding of molecular regulatory mechanisms of rice tillering
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	tiller	Identification and functional analysis of the MOC1 interacting protein 1	The overexpression of MIP1 resulted in enhanced tillering and reduced plant height
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	tiller	Identification and functional analysis of the MOC1 interacting protein 1	In-depth characterization of the context of MIP1 and MOC1 would further our understanding of molecular regulatory mechanisms of rice tillering
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	anther	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	anther	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Here, we report OsHUB1 (Oryza sativa HISTONE MONO-UBIQUITINATION1) and OsHUB2, the homologues of Arabidopsis HUB1 and HUB2 proteins which function as E3 ligases in H2Bub1, are involved in late anther development in rice
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	anther	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Our studies suggest that histone H2B monoubiquitination, mediated by OsHUB1 and OsHUB2, is an important epigenetic modification that in concert with H3K4me2 modulates transcriptional regulation of anther development in rice
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	development	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	development	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Here, we report OsHUB1 (Oryza sativa HISTONE MONO-UBIQUITINATION1) and OsHUB2, the homologues of Arabidopsis HUB1 and HUB2 proteins which function as E3 ligases in H2Bub1, are involved in late anther development in rice
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	development	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Our studies suggest that histone H2B monoubiquitination, mediated by OsHUB1 and OsHUB2, is an important epigenetic modification that in concert with H3K4me2 modulates transcriptional regulation of anther development in rice
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	tapetum	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	anther development	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	anther development	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Here, we report OsHUB1 (Oryza sativa HISTONE MONO-UBIQUITINATION1) and OsHUB2, the homologues of Arabidopsis HUB1 and HUB2 proteins which function as E3 ligases in H2Bub1, are involved in late anther development in rice
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	anther development	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Our studies suggest that histone H2B monoubiquitination, mediated by OsHUB1 and OsHUB2, is an important epigenetic modification that in concert with H3K4me2 modulates transcriptional regulation of anther development in rice
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	magnaporthe oryzae	OsHUB1 and OsHUB2 interact with SPIN6 and form homo- and hetero-dimers in rice.	OsHub1 and OsHub2 are down-regulated in the Spin6 RNAi plants and during the compatible interaction between rice and Magnaporthe oryzae
OsHUB1|MIP1	Os04g0550400	LOC_Os04g46450	immunity	OsHUB1 and OsHUB2 interact with SPIN6 and form homo- and hetero-dimers in rice.	Our results suggest that OsHUB1 and OsHUB2 may be associated with the SPIN6/OsRac1 pathway in rice immunity
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	anther	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	development	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	tapetum	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	anther development	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.	Histone H2B Monoubiquitination Mediated by OsHUB1 and OsHUB2 Is Involved in Anther Development by Regulating Tapetum Degradation Related Genes in Rice.
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	magnaporthe oryzae	OsHUB1 and OsHUB2 interact with SPIN6 and form homo- and hetero-dimers in rice.	OsHub1 and OsHub2 are down-regulated in the Spin6 RNAi plants and during the compatible interaction between rice and Magnaporthe oryzae
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	immunity	OsHUB1 and OsHUB2 interact with SPIN6 and form homo- and hetero-dimers in rice.	Our results suggest that OsHUB1 and OsHUB2 may be associated with the SPIN6/OsRac1 pathway in rice immunity
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	yield	Flowering-Related RING Protein 1 (FRRP1) Regulates Flowering Time and Yield Potential by Affecting Histone H2B Monoubiquitination in Rice (Oryza Sativa).	In conclusion, FRRP1 probably regulates flowering time and yield potential in rice by affecting histone H2B monoubiquitination, which leads to changes in gene expression in multiple processes
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	flowering time	Flowering-Related RING Protein 1 (FRRP1) Regulates Flowering Time and Yield Potential by Affecting Histone H2B Monoubiquitination in Rice (Oryza Sativa).	In conclusion, FRRP1 probably regulates flowering time and yield potential in rice by affecting histone H2B monoubiquitination, which leads to changes in gene expression in multiple processes
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	heading date	OsHUB2 inhibits function of OsTrx1 in heading date in rice.	OsHUB2 inhibits function of OsTrx1 in heading date in rice.
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	heading date	OsHUB2 inhibits function of OsTrx1 in heading date in rice.	 Here, we reported HISTONE MONOUBIQUITINATION 1 (OsHUB1) and OsHUB2 are involved in heading date regulation via the Hd1 and Ehd1 pathway
OsHUB2|FRRP1	Os10g0565600	LOC_Os10g41590	heading date	OsHUB2 inhibits function of OsTrx1 in heading date in rice.	 Together, our results (i) reveal that OsHUB2 represses the function of OsTrx1 and H3K4me3 levels at Ehd1 and (ii) suggest that OsHUB2-mediated H2B ubiquitination plays critical roles together with H3K4me3 in rice heading date regulation
OsHUS1	Os04g0528400	LOC_Os04g44620	meiotic recombination	OsHUS1 facilitates accurate meiotic recombination in rice	OsHUS1 facilitates accurate meiotic recombination in rice
OsHXK1	Os07g0446800	LOC_Os07g26540	pollen	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Overexpression of OsHXK1 also resulted in the overaccumulation of ROS, premature initiation of PCD, and pollen abortion
OsHXK1	Os07g0446800	LOC_Os07g26540	pollen	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Moreover, knockdown of OsHXK1 restored pollen fertility in OsAGO2 knockdown plants
OsHXK1	Os07g0446800	LOC_Os07g26540	fertility	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 Moreover, knockdown of OsHXK1 restored pollen fertility in OsAGO2 knockdown plants
OsHXK1	Os07g0446800	LOC_Os07g26540	tapetal	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.
OsHXK1	Os07g0446800	LOC_Os07g26540	tapetal	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 These results indicate that OsHXK1 controls the appropriate production of ROS and the proper timing of tapetal PCD and is directly regulated by OsAGO2 through epigenetic regulation
OsHXK1	Os07g0446800	LOC_Os07g26540	PCD	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.
OsHXK1	Os07g0446800	LOC_Os07g26540	PCD	OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers.	 These results indicate that OsHXK1 controls the appropriate production of ROS and the proper timing of tapetal PCD and is directly regulated by OsAGO2 through epigenetic regulation
OsHXK1	Os07g0446800	LOC_Os07g26540	photosynthesis	Improving the Rice Photosynthetic Efficiency and Yield by Editing OsHXK1 via CRISPR/Cas9 System	 They also revealed the important roles of OsHXK1 in the regulation of rice yield and photosynthesis
OsHXK1	Os07g0446800	LOC_Os07g26540	yield	Improving the Rice Photosynthetic Efficiency and Yield by Editing OsHXK1 via CRISPR/Cas9 System	Improving the Rice Photosynthetic Efficiency and Yield by Editing OsHXK1 via CRISPR/Cas9 System
OsHXK1	Os07g0446800	LOC_Os07g26540	yield	Improving the Rice Photosynthetic Efficiency and Yield by Editing OsHXK1 via CRISPR/Cas9 System	 They also revealed the important roles of OsHXK1 in the regulation of rice yield and photosynthesis
OsHXK1	Os07g0446800	LOC_Os07g26540	leaf	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.
OsHXK1	Os07g0446800	LOC_Os07g26540	leaf	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	 CONCLUSIONS: Overall, the outcomes of this study suggested that OsHXK1 could act as a positive regulator of rice leaf senescence by mediating glucose accumulation and inducing an increase in ROS
OsHXK1	Os07g0446800	LOC_Os07g26540	leaf senescence	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.
OsHXK1	Os07g0446800	LOC_Os07g26540	leaf senescence	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	 CONCLUSIONS: Overall, the outcomes of this study suggested that OsHXK1 could act as a positive regulator of rice leaf senescence by mediating glucose accumulation and inducing an increase in ROS
OsHXK1	Os07g0446800	LOC_Os07g26540	chloroplast	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	 The upregulation of OsHXK1 led to premature senescence of rice leaves, a decreased level of chlorophyll, and damage to the chloroplast structure
OsHXK1	Os07g0446800	LOC_Os07g26540	senescence	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.
OsHXK1	Os07g0446800	LOC_Os07g26540	senescence	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	 The upregulation of OsHXK1 led to premature senescence of rice leaves, a decreased level of chlorophyll, and damage to the chloroplast structure
OsHXK1	Os07g0446800	LOC_Os07g26540	senescence	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	 CONCLUSIONS: Overall, the outcomes of this study suggested that OsHXK1 could act as a positive regulator of rice leaf senescence by mediating glucose accumulation and inducing an increase in ROS
OsHXK1	Os07g0446800	LOC_Os07g26540	cell death	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	 The overexpression of OsHXK1 resulted in increases in glucose and ROS levels and produced programmed cell death (PCD) signals earlier at the booting stage
OsHXK1	Os07g0446800	LOC_Os07g26540	programmed cell death	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	 The overexpression of OsHXK1 resulted in increases in glucose and ROS levels and produced programmed cell death (PCD) signals earlier at the booting stage
OsHXK10	Os05g0375100	LOC_Os05g31110	grain filling	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	The results demonstrate that OsHXK10 plays an essential role in anther dehiscence, pollen germination and hence grain filling in rice
OsHXK10	Os05g0375100	LOC_Os05g31110	growth	Structure, expression, and functional analysis of the hexokinase gene family in rice (Oryza sativa L.)	To investigate the roles of hexokinases in rice growth and development, we analyzed rice sequence databases and isolated ten rice hexokinase cDNAs, OsHXK1 (Oryza sativa Hexokinase 1) through OsHXK10
OsHXK10	Os05g0375100	LOC_Os05g31110	grain	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	The results demonstrate that OsHXK10 plays an essential role in anther dehiscence, pollen germination and hence grain filling in rice
OsHXK10	Os05g0375100	LOC_Os05g31110	palea	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	The promoter of OsHXK10 was found to drive the expression of β-glucuronidase (GUS) specifically in the anther wall and mature and germinating pollens as well as in palea of rice flower
OsHXK10	Os05g0375100	LOC_Os05g31110	pollen	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	The promoter of OsHXK10 was found to drive the expression of β-glucuronidase (GUS) specifically in the anther wall and mature and germinating pollens as well as in palea of rice flower
OsHXK10	Os05g0375100	LOC_Os05g31110	pollen	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	The results demonstrate that OsHXK10 plays an essential role in anther dehiscence, pollen germination and hence grain filling in rice
OsHXK10	Os05g0375100	LOC_Os05g31110	pollen	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination
OsHXK10	Os05g0375100	LOC_Os05g31110	stamen	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	One of them, OsHXK10, is preferentially expressed in stamen
OsHXK10	Os05g0375100	LOC_Os05g31110	seed	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	By seed maturity, the proportion of empty seed was significantly increased in the OsHXK10 RNAi lines than that of the wild-type
OsHXK10	Os05g0375100	LOC_Os05g31110	flower	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	The promoter of OsHXK10 was found to drive the expression of β-glucuronidase (GUS) specifically in the anther wall and mature and germinating pollens as well as in palea of rice flower
OsHXK10	Os05g0375100	LOC_Os05g31110	flower	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	Suppression of OsHXK10 expression in rice by using RNAi approach showed that the anthers of some flowers in the RNAi lines were unable to dehisce, probably due to inhibition in cell wall thickening of the anthers
OsHXK10	Os05g0375100	LOC_Os05g31110	flower	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	Real-time RT-PCR and in situ hybridization analysis revealed that OsHXK10 mRNA level was significantly reduced in the ndaF, particularly in their anther walls, as compared to that of the normal flower
OsHXK10	Os05g0375100	LOC_Os05g31110	anther	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	The promoter of OsHXK10 was found to drive the expression of β-glucuronidase (GUS) specifically in the anther wall and mature and germinating pollens as well as in palea of rice flower
OsHXK10	Os05g0375100	LOC_Os05g31110	anther	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	Suppression of OsHXK10 expression in rice by using RNAi approach showed that the anthers of some flowers in the RNAi lines were unable to dehisce, probably due to inhibition in cell wall thickening of the anthers
OsHXK10	Os05g0375100	LOC_Os05g31110	anther	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	Real-time RT-PCR and in situ hybridization analysis revealed that OsHXK10 mRNA level was significantly reduced in the ndaF, particularly in their anther walls, as compared to that of the normal flower
OsHXK10	Os05g0375100	LOC_Os05g31110	anther	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	The results demonstrate that OsHXK10 plays an essential role in anther dehiscence, pollen germination and hence grain filling in rice
OsHXK10	Os05g0375100	LOC_Os05g31110	anther	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination
OsHXK10	Os05g0375100	LOC_Os05g31110	cell wall	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination	Suppression of OsHXK10 expression in rice by using RNAi approach showed that the anthers of some flowers in the RNAi lines were unable to dehisce, probably due to inhibition in cell wall thickening of the anthers
OsHXK10	Os05g0375100	LOC_Os05g31110	pollen	Structure, expression, and functional analysis of the hexokinase gene family in rice (Oryza sativa L.)	Gene expression profiling revealed that OsHXK2 through OsHXK9 are expressed ubiquitously in various organs, whereas OsHXK10 expression is pollen-specific
OsHXK5	Os05g0522500	LOC_Os05g44760	seedling	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Notably, the expression of OsHXK5, OsHXK6, or their mutant alleles complemented the Arabidopsis glucose insensitive2-1 mutant, thereby resulting in wild-type characteristics in seedling development, Glc-dependent gene expression, and plant growth
OsHXK5	Os05g0522500	LOC_Os05g44760	growth	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Notably, the expression of OsHXK5, OsHXK6, or their mutant alleles complemented the Arabidopsis glucose insensitive2-1 mutant, thereby resulting in wild-type characteristics in seedling development, Glc-dependent gene expression, and plant growth
OsHXK5	Os05g0522500	LOC_Os05g44760	growth	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Furthermore, transgenic rice plants overexpressing OsHXK5 or OsHXK6 exhibited hypersensitive plant growth retardation and enhanced repression of the photosynthetic gene RbcS in response to Glc treatment
OsHXK5	Os05g0522500	LOC_Os05g44760	mitochondria	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Transient expression analyses using GFP fusion constructs revealed that OsHXK5 and OsHXK6 are associated with mitochondria
OsHXK5	Os05g0522500	LOC_Os05g44760	mitochondria	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Interestingly, the OsHXK5DeltamTP-GFP and OsHXK6DeltamTP-GFP fusion proteins, which lack N-terminal mitochondrial targeting peptides, were present mainly in the nucleus with a small amount of the proteins seen in the cytosol
OsHXK5	Os05g0522500	LOC_Os05g44760	mitochondria	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	In addition, the OsHXK5NLS-GFP and OsHXK6NLS-GFP fusion proteins harboring nuclear localization signals were targeted predominantly in the nucleus, suggesting that these OsHXKs retain a dual-targeting ability to mitochondria and nuclei
OsHXK5	Os05g0522500	LOC_Os05g44760	seed	Structure, expression, and functional analysis of the hexokinase gene family in rice (Oryza sativa L.)	Sugars induced the expression of three OsHXKs, OsHXK2, OsHXK5, and OsHXK6, in excised leaves, while suppressing OsHXK7 expression in excised leaves and immature seeds
OsHXK5	Os05g0522500	LOC_Os05g44760	pollen	Deficiency of rice hexokinase HXK5 impairs synthesis and utilization of starch in pollen grains and causes male sterility.	Our results demonstrate that OsHXK5 contributes to a large portion of the hexokinase activity necessary for the starch utilization pathway during pollen germination and tube growth, as well as for starch biosynthesis during pollen maturation
OsHXK5	Os05g0522500	LOC_Os05g44760	starch	Deficiency of rice hexokinase HXK5 impairs synthesis and utilization of starch in pollen grains and causes male sterility.	We characterized hxk5-1, a Tos17 mutant of OsHXK5 that is up-regulated in maturing pollen, a stage when starch accumulates
OsHXK5	Os05g0522500	LOC_Os05g44760	starch	Deficiency of rice hexokinase HXK5 impairs synthesis and utilization of starch in pollen grains and causes male sterility.	Our results demonstrate that OsHXK5 contributes to a large portion of the hexokinase activity necessary for the starch utilization pathway during pollen germination and tube growth, as well as for starch biosynthesis during pollen maturation
OsHXK5	Os05g0522500	LOC_Os05g44760	starch biosynthesis	Deficiency of rice hexokinase HXK5 impairs synthesis and utilization of starch in pollen grains and causes male sterility.	Our results demonstrate that OsHXK5 contributes to a large portion of the hexokinase activity necessary for the starch utilization pathway during pollen germination and tube growth, as well as for starch biosynthesis during pollen maturation
OsHXK6	Os01g0742500	LOC_Os01g53930	growth	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Notably, the expression of OsHXK5, OsHXK6, or their mutant alleles complemented the Arabidopsis glucose insensitive2-1 mutant, thereby resulting in wild-type characteristics in seedling development, Glc-dependent gene expression, and plant growth
OsHXK6	Os01g0742500	LOC_Os01g53930	growth	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Furthermore, transgenic rice plants overexpressing OsHXK5 or OsHXK6 exhibited hypersensitive plant growth retardation and enhanced repression of the photosynthetic gene RbcS in response to Glc treatment
OsHXK6	Os01g0742500	LOC_Os01g53930	seed	Structure, expression, and functional analysis of the hexokinase gene family in rice (Oryza sativa L.)	Sugars induced the expression of three OsHXKs, OsHXK2, OsHXK5, and OsHXK6, in excised leaves, while suppressing OsHXK7 expression in excised leaves and immature seeds
OsHXK6	Os01g0742500	LOC_Os01g53930	mitochondria	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Transient expression analyses using GFP fusion constructs revealed that OsHXK5 and OsHXK6 are associated with mitochondria
OsHXK6	Os01g0742500	LOC_Os01g53930	mitochondria	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Interestingly, the OsHXK5DeltamTP-GFP and OsHXK6DeltamTP-GFP fusion proteins, which lack N-terminal mitochondrial targeting peptides, were present mainly in the nucleus with a small amount of the proteins seen in the cytosol
OsHXK6	Os01g0742500	LOC_Os01g53930	mitochondria	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	In addition, the OsHXK5NLS-GFP and OsHXK6NLS-GFP fusion proteins harboring nuclear localization signals were targeted predominantly in the nucleus, suggesting that these OsHXKs retain a dual-targeting ability to mitochondria and nuclei
OsHXK6	Os01g0742500	LOC_Os01g53930	seedling	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors	Notably, the expression of OsHXK5, OsHXK6, or their mutant alleles complemented the Arabidopsis glucose insensitive2-1 mutant, thereby resulting in wild-type characteristics in seedling development, Glc-dependent gene expression, and plant growth
OsHXK6	Os01g0742500	LOC_Os01g53930	sugar	The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa.	They tag OsHXK6 (rice hexokinase), ISA2 (rice isoamylase) and a tandem array of sugar transporters
OsHXK7	Os05g0187100	LOC_Os05g09500	sugar	Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism.	Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism.
OsHXK7	Os05g0187100	LOC_Os05g09500	sugar	Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism.	This result provides compelling evidence that OsHXK7 functions in sugar signaling via a glycolysis-dependent manner under normal conditions, but its signaling role is suppressed when O2 is deficient
OsHXK7	Os05g0187100	LOC_Os05g09500	sugar	Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism.	This result suggests the distinct role that OsHXK7 plays in sugar metabolism and efficient germination by enforcing glycolysis-mediated fermentation in O2 -deficient rice
OsHXK7	Os05g0187100	LOC_Os05g09500	growth	Conformational Characteristics of Rice Hexokinase OsHXK7 as a Moonlighting Protein involved in Sugar Signalling and Metabolism.	These results suggest that OsHXK7 binding to Glc leads to a conformational change, that is likely essential for the function of OsHXK7 in Glc signalling and metabolism during plant growth and development
OsHXK7	Os05g0187100	LOC_Os05g09500	development	Conformational Characteristics of Rice Hexokinase OsHXK7 as a Moonlighting Protein involved in Sugar Signalling and Metabolism.	These results suggest that OsHXK7 binding to Glc leads to a conformational change, that is likely essential for the function of OsHXK7 in Glc signalling and metabolism during plant growth and development
OsHXK7	Os05g0187100	LOC_Os05g09500	sugar	Conformational Characteristics of Rice Hexokinase OsHXK7 as a Moonlighting Protein involved in Sugar Signalling and Metabolism.	Conformational Characteristics of Rice Hexokinase OsHXK7 as a Moonlighting Protein involved in Sugar Signalling and Metabolism.
OsHXK7	Os05g0187100	LOC_Os05g09500	plant growth	Conformational Characteristics of Rice Hexokinase OsHXK7 as a Moonlighting Protein involved in Sugar Signalling and Metabolism.	These results suggest that OsHXK7 binding to Glc leads to a conformational change, that is likely essential for the function of OsHXK7 in Glc signalling and metabolism during plant growth and development
OsHYPK	Os03g0832300	LOC_Os03g61680	resistance	OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice.	 We found that loss of OsHYPK function leads to developmental defects in rice plant architecture but increased resistance to abiotic stresses, attributable to perturbation of the N-terminal acetylome and accelerated global protein turnover
OsHYPK	Os03g0832300	LOC_Os03g61680	abiotic stress	OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice.	 We found that loss of OsHYPK function leads to developmental defects in rice plant architecture but increased resistance to abiotic stresses, attributable to perturbation of the N-terminal acetylome and accelerated global protein turnover
OsHYPK	Os03g0832300	LOC_Os03g61680	abiotic stress	OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice.	 Furthermore, we demonstrated that OsHYPK is also a substrate of NatA and that N-terminal acetylation of OsHYPK promotes its own degradation, probably through the Ac/N-degron pathway, which could be induced by abiotic stresses
OsHYPK	Os03g0832300	LOC_Os03g61680	biotic stress	OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice.	 We found that loss of OsHYPK function leads to developmental defects in rice plant architecture but increased resistance to abiotic stresses, attributable to perturbation of the N-terminal acetylome and accelerated global protein turnover
OsHYPK	Os03g0832300	LOC_Os03g61680	biotic stress	OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice.	 Furthermore, we demonstrated that OsHYPK is also a substrate of NatA and that N-terminal acetylation of OsHYPK promotes its own degradation, probably through the Ac/N-degron pathway, which could be induced by abiotic stresses
OsHYPK	Os03g0832300	LOC_Os03g61680	architecture	OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice.	 We found that loss of OsHYPK function leads to developmental defects in rice plant architecture but increased resistance to abiotic stresses, attributable to perturbation of the N-terminal acetylome and accelerated global protein turnover
OsHYPK	Os03g0832300	LOC_Os03g61680	plant architecture	OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice.	 We found that loss of OsHYPK function leads to developmental defects in rice plant architecture but increased resistance to abiotic stresses, attributable to perturbation of the N-terminal acetylome and accelerated global protein turnover
OsHyPRP16	Os04g0612500	LOC_Os04g52260	development	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	 The present study suggests that the D1 fragment of OsHyPRP16 promoter is a valuable tool for breeding and development of rice lines with early-inducible and pathogen-responsive enhanced disease resistance
OsHyPRP16	Os04g0612500	LOC_Os04g52260	resistance	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.
OsHyPRP16	Os04g0612500	LOC_Os04g52260	resistance	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	 The present study suggests that the D1 fragment of OsHyPRP16 promoter is a valuable tool for breeding and development of rice lines with early-inducible and pathogen-responsive enhanced disease resistance
OsHyPRP16	Os04g0612500	LOC_Os04g52260	disease	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	 The present study suggests that the D1 fragment of OsHyPRP16 promoter is a valuable tool for breeding and development of rice lines with early-inducible and pathogen-responsive enhanced disease resistance
OsHyPRP16	Os04g0612500	LOC_Os04g52260	disease resistance	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	 The present study suggests that the D1 fragment of OsHyPRP16 promoter is a valuable tool for breeding and development of rice lines with early-inducible and pathogen-responsive enhanced disease resistance
OsHyPRP16	Os04g0612500	LOC_Os04g52260	stress	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.
OsHyPRP16	Os04g0612500	LOC_Os04g52260	magnaporthe oryzae	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.
OsHyPRP16	Os04g0612500	LOC_Os04g52260	magnaporthe oryzae	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	The rice Hybrid Proline Rich Protein (HyPRP) encoding gene, OsHyPRP16 expression exhibit early upregulation in response to Magnaporthe oryzae inoculation
OsHyPRP16	Os04g0612500	LOC_Os04g52260	breeding	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	 The present study suggests that the D1 fragment of OsHyPRP16 promoter is a valuable tool for breeding and development of rice lines with early-inducible and pathogen-responsive enhanced disease resistance
OsI-BAK1	Os03g0440900	LOC_Os03g32580	leaf	Brassinosteroid insensitive 1-associated kinase 1 (OsI-BAK1) is associated with grain filling and leaf development in rice.	Down regulation of OsI-BAK1 caused a reduction in cell number and enlargement in leaf bulliform cells
OsI-BAK1	Os03g0440900	LOC_Os03g32580	leaf	Brassinosteroid insensitive 1-associated kinase 1 (OsI-BAK1) is associated with grain filling and leaf development in rice.	Furthermore, transgenic rice plants overexpressing OsI-BAK1 were demonstrated to have corrugated and twisted leaves probably due to increased cell number that caused abnormal bulliform cell structure which were enlarged and plugged deep into leaf epidermis
OsI-BAK1	Os03g0440900	LOC_Os03g32580	leaf	Brassinosteroid insensitive 1-associated kinase 1 (OsI-BAK1) is associated with grain filling and leaf development in rice.	The current findings suggest that OsI-BAK1 may play an important role in the developmental processes of rice grain filling and leaf cell including the bulliform cells
OsI-BAK1	Os03g0440900	LOC_Os03g32580	grain	Brassinosteroid insensitive 1-associated kinase 1 (OsI-BAK1) is associated with grain filling and leaf development in rice.	The current findings suggest that OsI-BAK1 may play an important role in the developmental processes of rice grain filling and leaf cell including the bulliform cells
OsI-BAK1	Os03g0440900	LOC_Os03g32580	development	Brassinosteroid insensitive 1-associated kinase 1 (OsI-BAK1) is associated with grain filling and leaf development in rice.	Histological analyses demonstrated that embryos were either absent or retarded in their development in these unfilled rice grains of OsI-BAK1 RNAi plants
OsI-BAK1	Os03g0440900	LOC_Os03g32580	grain filling	Brassinosteroid insensitive 1-associated kinase 1 (OsI-BAK1) is associated with grain filling and leaf development in rice.	The current findings suggest that OsI-BAK1 may play an important role in the developmental processes of rice grain filling and leaf cell including the bulliform cells
OsI-BAK1	Os03g0440900	LOC_Os03g32580	epidermis	Brassinosteroid insensitive 1-associated kinase 1 (OsI-BAK1) is associated with grain filling and leaf development in rice.	Furthermore, transgenic rice plants overexpressing OsI-BAK1 were demonstrated to have corrugated and twisted leaves probably due to increased cell number that caused abnormal bulliform cell structure which were enlarged and plugged deep into leaf epidermis
OsI-BAK1	Os03g0440900	LOC_Os03g32580	resistance	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.
OsI-BAK1	Os03g0440900	LOC_Os03g32580	defense	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.	 These findings suggest that OsI-BAK1 acts as a negative modulator of defense responses in rice to BPH and that BPH might exploit this modulator for its own benefit
OsI-BAK1	Os03g0440900	LOC_Os03g32580	ethylene	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.	 Silencing OsI-BAK1 (ir-ibak1) in rice enhanced the BPH-induced transcript levels of three defense-related WRKY genes (OsWRKY24, OsWRKY53 and OsWRKY70) but decreased the induced levels of ethylene
OsI-BAK1	Os03g0440900	LOC_Os03g32580	brown planthopper	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.
OsI-BAK1	Os03g0440900	LOC_Os03g32580	defense response	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.	 These findings suggest that OsI-BAK1 acts as a negative modulator of defense responses in rice to BPH and that BPH might exploit this modulator for its own benefit
OsI-BAK1	Os03g0440900	LOC_Os03g32580	R protein	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.	 Here, we found that a simple eLRR protein OsI-BAK1 in rice localizes to the plasma membrane
OsI-BAK1	Os03g0440900	LOC_Os03g32580	plasma membrane	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.	 Here, we found that a simple eLRR protein OsI-BAK1 in rice localizes to the plasma membrane
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	Indica) OsIAA1 cDNA as a monocot member of the Aux/IAA gene family
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	The predicted amino acid sequence of OsIAA1 corresponds to a protein of ca
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	Northern blot analysis revealed that the OsIAA1 transcript levels decrease in the excised coleoptile segments on auxin starvation, and the level is restored when auxin is supplemented; the increase in OsIAA1 transcript level was apparent within 15 to 30 min of auxin application
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	Auxin-induced OsIAA1 expression appears to be correlated with the elongation of excised coleoptile segments
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	In light-grown rice seedlings, OsIAA1 is preferentially expressed in roots and basal segment of the seedling, whereas in the etiolated rice seedlings, the OsIAA1 transcripts are most abundant in the coleoptile
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	A comparative analysis in light- and dark-grown seedling tissues indicates that the OsIAA1 transcript levels decrease on illumination
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light
OsIAA1	Os01g0178500	LOC_Os01g08320	height	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	In addition, the OsIAA1-overexpression transgenic plants showed distinctive morphological changes such as decreased plant height and loose plant architecture
OsIAA1	Os01g0178500	LOC_Os01g08320	BR	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	T-DNA insertion mutant of OsARF1 showed reduced sensitivity to BR treatment, resembling the phenotype of OsIAA1-overexpression plants
OsIAA1	Os01g0178500	LOC_Os01g08320	auxin	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	Northern blot analysis revealed that the OsIAA1 transcript levels decrease in the excised coleoptile segments on auxin starvation, and the level is restored when auxin is supplemented; the increase in OsIAA1 transcript level was apparent within 15 to 30 min of auxin application
OsIAA1	Os01g0178500	LOC_Os01g08320	auxin	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	Auxin-induced OsIAA1 expression appears to be correlated with the elongation of excised coleoptile segments
OsIAA1	Os01g0178500	LOC_Os01g08320	auxin	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light
OsIAA1	Os01g0178500	LOC_Os01g08320	auxin	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	Over-expression of OsIAA1 in rice resulted in reduced inhibition of root elongation to auxin treatment, but increased sensitivity to 24-epiBL treatment
OsIAA1	Os01g0178500	LOC_Os01g08320	auxin	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	In addition, expression patterns of some genes responsive to brassinosteroid and auxin were changed in the OsIAA1-overexpression plants
OsIAA1	Os01g0178500	LOC_Os01g08320	auxin	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	These data suggested that OsIAA1 may play important roles in the cross-talk of auxin and brassinosteroid signaling pathways and plant morphogenesis
OsIAA1	Os01g0178500	LOC_Os01g08320	auxin	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis
OsIAA1	Os01g0178500	LOC_Os01g08320	seedling	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	In light-grown rice seedlings, OsIAA1 is preferentially expressed in roots and basal segment of the seedling, whereas in the etiolated rice seedlings, the OsIAA1 transcripts are most abundant in the coleoptile
OsIAA1	Os01g0178500	LOC_Os01g08320	seedling	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	A comparative analysis in light- and dark-grown seedling tissues indicates that the OsIAA1 transcript levels decrease on illumination
OsIAA1	Os01g0178500	LOC_Os01g08320	brassinosteroid	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	In addition, expression patterns of some genes responsive to brassinosteroid and auxin were changed in the OsIAA1-overexpression plants
OsIAA1	Os01g0178500	LOC_Os01g08320	brassinosteroid	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	These data suggested that OsIAA1 may play important roles in the cross-talk of auxin and brassinosteroid signaling pathways and plant morphogenesis
OsIAA1	Os01g0178500	LOC_Os01g08320	brassinosteroid	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis
OsIAA1	Os01g0178500	LOC_Os01g08320	root	OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light	In light-grown rice seedlings, OsIAA1 is preferentially expressed in roots and basal segment of the seedling, whereas in the etiolated rice seedlings, the OsIAA1 transcripts are most abundant in the coleoptile
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa)	Moreover, yeast two-hybrid and bimolecular fluorescence complementation assays showed that OsTIR1 and OsAFB2 interact with OsIAA1
OsIAA1	Os01g0178500	LOC_Os01g08320	root	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	Over-expression of OsIAA1 in rice resulted in reduced inhibition of root elongation to auxin treatment, but increased sensitivity to 24-epiBL treatment
OsIAA1	Os01g0178500	LOC_Os01g08320	architecture	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	In addition, the OsIAA1-overexpression transgenic plants showed distinctive morphological changes such as decreased plant height and loose plant architecture
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	This work focused on isolation and characterization of a member of Aux/IAA family in rice named OsIAA1
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	The results indicated that OsIAA1 was constitutively expressed in all the tissues and organs investigated
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	Over-expression of OsIAA1 in rice resulted in reduced inhibition of root elongation to auxin treatment, but increased sensitivity to 24-epiBL treatment
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	In addition, the OsIAA1-overexpression transgenic plants showed distinctive morphological changes such as decreased plant height and loose plant architecture
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	Protein interaction analysis suggested that OsIAA1 may act through interaction with OsARF1
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	T-DNA insertion mutant of OsARF1 showed reduced sensitivity to BR treatment, resembling the phenotype of OsIAA1-overexpression plants
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	In addition, expression patterns of some genes responsive to brassinosteroid and auxin were changed in the OsIAA1-overexpression plants
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	These data suggested that OsIAA1 may play important roles in the cross-talk of auxin and brassinosteroid signaling pathways and plant morphogenesis
OsIAA1	Os01g0178500	LOC_Os01g08320	iaa	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis
OsIAA10	Os02g0817600	LOC_Os02g57250	resistance	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.	Transgenic rice plants overexpressing wild-type or a dominant-negative (degradation-resistant) mutant of OsIAA10 phenocopy RDV symptoms are more susceptible to RDV infection; however, knockdown of OsIAA10 enhances the resistance of rice to RDV infection
OsIAA10	Os02g0817600	LOC_Os02g57250	auxin	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.
OsIAA10	Os02g0817600	LOC_Os02g57250	disease	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.
OsIAA10	Os02g0817600	LOC_Os02g57250	dwarf	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.
OsIAA10	Os02g0817600	LOC_Os02g57250	disease development	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.
OsIAA10	Os02g0817600	LOC_Os02g57250	auxin	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	In turn, RDV infection triggers increased auxin biosynthesis and accumulation in rice, and that treatment with exogenous auxin reduces OsIAA10 protein level, thereby unleashing a group of OsIAA10-interacting OsARFs to mediate downstream antiviral responses
OsIAA10	Os02g0817600	LOC_Os02g57250	defense	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	Together with our previous discovery that the viral P2 protein stabilizes OsIAA10 protein via thwarting its interaction with OsTIR1 to enhance viral infection and pathogenesis, our results reveal a novel auxin-IAA10-ARFs-mediated signaling mechanism employed by rice and RDV for defense and counter defense responses
OsIAA10	Os02g0817600	LOC_Os02g57250	defense response	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	Together with our previous discovery that the viral P2 protein stabilizes OsIAA10 protein via thwarting its interaction with OsTIR1 to enhance viral infection and pathogenesis, our results reveal a novel auxin-IAA10-ARFs-mediated signaling mechanism employed by rice and RDV for defense and counter defense responses
OsIAA10	Os02g0817600	LOC_Os02g57250	auxin biosynthesis	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	In turn, RDV infection triggers increased auxin biosynthesis and accumulation in rice, and that treatment with exogenous auxin reduces OsIAA10 protein level, thereby unleashing a group of OsIAA10-interacting OsARFs to mediate downstream antiviral responses
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	Here, a member of the rice Aux/IAA family genes, OsIAA11 (LOC_Os03g43400), was isolated from a rice mutant defective in lateral root development
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The gain-of-function mutation in OsIAA11 strictly blocks the initiation of lateral root primordia, but it does not affect crown root development
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The expression of OsIAA11 is defined in root tips, lateral root caps, steles, and lateral root primordia
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	Taken together, the results indicate that the gain-of-function mutation in OsIAA11 caused the inhibition of lateral root development in rice
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	A gain-of-function mutation in OsIAA11 affects lateral root development in rice
OsIAA11	Os03g0633500	LOC_Os03g43400	iaa	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	Here, a member of the rice Aux/IAA family genes, OsIAA11 (LOC_Os03g43400), was isolated from a rice mutant defective in lateral root development
OsIAA11	Os03g0633500	LOC_Os03g43400	iaa	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The gain-of-function mutation in OsIAA11 strictly blocks the initiation of lateral root primordia, but it does not affect crown root development
OsIAA11	Os03g0633500	LOC_Os03g43400	iaa	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The expression of OsIAA11 is defined in root tips, lateral root caps, steles, and lateral root primordia
OsIAA11	Os03g0633500	LOC_Os03g43400	iaa	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The auxin reporter DR5-GUS (beta-glucuronidase) was expressed at lower levels in the mutant than in wild-type, indicating that OsIAA11 is involved in auxin signaling in root caps
OsIAA11	Os03g0633500	LOC_Os03g43400	iaa	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The transcript abundance of both OsPIN1b and OsPIN10a was diminished in root tips of the Osiaa11 mutant
OsIAA11	Os03g0633500	LOC_Os03g43400	iaa	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	Taken together, the results indicate that the gain-of-function mutation in OsIAA11 caused the inhibition of lateral root development in rice
OsIAA11	Os03g0633500	LOC_Os03g43400	iaa	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	A gain-of-function mutation in OsIAA11 affects lateral root development in rice
OsIAA11	Os03g0633500	LOC_Os03g43400	auxin	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The auxin reporter DR5-GUS (beta-glucuronidase) was expressed at lower levels in the mutant than in wild-type, indicating that OsIAA11 is involved in auxin signaling in root caps
OsIAA11	Os03g0633500	LOC_Os03g43400	root development	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	Here, a member of the rice Aux/IAA family genes, OsIAA11 (LOC_Os03g43400), was isolated from a rice mutant defective in lateral root development
OsIAA11	Os03g0633500	LOC_Os03g43400	root development	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The gain-of-function mutation in OsIAA11 strictly blocks the initiation of lateral root primordia, but it does not affect crown root development
OsIAA11	Os03g0633500	LOC_Os03g43400	root development	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	Taken together, the results indicate that the gain-of-function mutation in OsIAA11 caused the inhibition of lateral root development in rice
OsIAA11	Os03g0633500	LOC_Os03g43400	root development	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	A gain-of-function mutation in OsIAA11 affects lateral root development in rice
OsIAA11	Os03g0633500	LOC_Os03g43400	root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	Here, a member of the rice Aux/IAA family genes, OsIAA11 (LOC_Os03g43400), was isolated from a rice mutant defective in lateral root development
OsIAA11	Os03g0633500	LOC_Os03g43400	root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The gain-of-function mutation in OsIAA11 strictly blocks the initiation of lateral root primordia, but it does not affect crown root development
OsIAA11	Os03g0633500	LOC_Os03g43400	root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The expression of OsIAA11 is defined in root tips, lateral root caps, steles, and lateral root primordia
OsIAA11	Os03g0633500	LOC_Os03g43400	root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The auxin reporter DR5-GUS (beta-glucuronidase) was expressed at lower levels in the mutant than in wild-type, indicating that OsIAA11 is involved in auxin signaling in root caps
OsIAA11	Os03g0633500	LOC_Os03g43400	root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The transcript abundance of both OsPIN1b and OsPIN10a was diminished in root tips of the Osiaa11 mutant
OsIAA11	Os03g0633500	LOC_Os03g43400	root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	Taken together, the results indicate that the gain-of-function mutation in OsIAA11 caused the inhibition of lateral root development in rice
OsIAA11	Os03g0633500	LOC_Os03g43400	root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	A gain-of-function mutation in OsIAA11 affects lateral root development in rice
OsIAA11	Os03g0633500	LOC_Os03g43400	crown	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The gain-of-function mutation in OsIAA11 strictly blocks the initiation of lateral root primordia, but it does not affect crown root development
OsIAA11	Os03g0633500	LOC_Os03g43400	crown root	A gain-of-function mutation in OsIAA11 affects lateral root development in rice	The gain-of-function mutation in OsIAA11 strictly blocks the initiation of lateral root primordia, but it does not affect crown root development
OsIAA11	Os03g0633500	LOC_Os03g43400	root	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.
OsIAA11	Os03g0633500	LOC_Os03g43400	root	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Furthermore, expressing additional OsIPK2 or its N-terminal amino acid sequence enhanced the accumulation of OsIAA11 protein in transgenic plants, which in turn caused defects in lateral root formation and auxin response
OsIAA11	Os03g0633500	LOC_Os03g43400	auxin	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Furthermore, expressing additional OsIPK2 or its N-terminal amino acid sequence enhanced the accumulation of OsIAA11 protein in transgenic plants, which in turn caused defects in lateral root formation and auxin response
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Furthermore, expressing additional OsIPK2 or its N-terminal amino acid sequence enhanced the accumulation of OsIAA11 protein in transgenic plants, which in turn caused defects in lateral root formation and auxin response
OsIAA11	Os03g0633500	LOC_Os03g43400	Kinase	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.
OsIAA11	Os03g0633500	LOC_Os03g43400	auxin response	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Furthermore, expressing additional OsIPK2 or its N-terminal amino acid sequence enhanced the accumulation of OsIAA11 protein in transgenic plants, which in turn caused defects in lateral root formation and auxin response
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	Callus initiation from root explants employs different strategies in rice and Arabidopsis.	OsIAA11 and its Arabidopsis homologue AtIAA14 are key players in lateral rooting
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	Callus initiation from root explants employs different strategies in rice and Arabidopsis.	By contrast, OsIAA11 is strictly required for lateral rooting in the rice PR, meaning the OsIAA11 pathway is the only choice for callus initiation
OsIAA11	Os03g0633500	LOC_Os03g43400	root	Tuning a timing device that regulates lateral root development in rice.	OsIAA11 controls transcription of specific genes, including its own, that are required for lateral root development
OsIAA11	Os03g0633500	LOC_Os03g43400	development	Tuning a timing device that regulates lateral root development in rice.	OsIAA11 controls transcription of specific genes, including its own, that are required for lateral root development
OsIAA11	Os03g0633500	LOC_Os03g43400	root development	Tuning a timing device that regulates lateral root development in rice.	OsIAA11 controls transcription of specific genes, including its own, that are required for lateral root development
OsIAA11	Os03g0633500	LOC_Os03g43400	lateral root	Tuning a timing device that regulates lateral root development in rice.	OsIAA11 controls transcription of specific genes, including its own, that are required for lateral root development
OsIAA12	Os03g0633800	LOC_Os03g43410	leaf	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	LC3 deficiency results in increased leaf inclination and enhanced expressions of OsIAA12 and OsGH3
OsIAA12	Os03g0633800	LOC_Os03g43410	leaf	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	Being consistent, transgenic plants with OsIAA12 overexpression or deficiency of OsARF17 which interacts with OsIAA12 do present enlarged leaf inclination
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	Earlier, we reported the isolation of OsiIAA1 cDNA, first monocot member of Aux/IAA gene family from rice
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	Extending this work further, we have isolated the OsiIAA1 gene from rice localized on chromosome 3
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	The increased accumulation of OsiIAA1 transcript in auxin-treated rice coleoptiles even in the presence of a protein synthesis inhibitor, cycloheximide, suggested that OsiIAA1 is a primary auxin response gene; the expression of OsiIAA1 gene was also upregulated in the presence of cycloheximide alone
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	The OsiIAA1 transcript levels were down-regulated in etiolated rice coleoptiles irradiated with far-red, red and blue light, suggesting the existence of a cross-talk between auxin and light signaling
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	The antibodies raised against His6-OsiIAA1 recombinant protein could detect the OsiIAA1 protein in the plant extract only in the presence of a proteasome inhibitor, MG132, indicating that OsiIAA1 is rapidly degraded by proteasome complex
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	Also, the proteasome inhibitor MG132 stabilized the purified His6-OsiIAA1 protein to some extent in the cell-free extracts of rice coleoptiles
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	The OsiIAA1 protein harbors two nuclear localization signals (NLSs), one bipartite and the other resembling SV40 type NLS
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	These studies indicate that nuclear localization of OsiIAA1 could be a prerequisite for its role in auxin signal transduction
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	In this study, we newly isolated and characterized a rice gain-of-function mutant, Osiaa13, containing a single amino acid substitution in the core sequence required for the degradation of the OsIAA13 protein
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	The Osiaa13 mutant displayed typical auxin-related phenotypes: the number of lateral roots was significantly reduced and the root gravitropic response was defective
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Osiaa13 mutants also exhibited altered GUS staining controlled by the DR5 promoter in lateral root initiation sites
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Furthermore, expression levels of several genes that might be associated with lateral root initiation were altered in Osiaa13
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Taken together, our results indicate that OsIAA13 is involved in auxin signaling and controls the expression of genes that are required for lateral root initiation in rice
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	iaa	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	The Osiaa13 mutant displayed typical auxin-related phenotypes: the number of lateral roots was significantly reduced and the root gravitropic response was defective
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Osiaa13 mutants also exhibited altered GUS staining controlled by the DR5 promoter in lateral root initiation sites
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Furthermore, expression levels of several genes that might be associated with lateral root initiation were altered in Osiaa13
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Taken together, our results indicate that OsIAA13 is involved in auxin signaling and controls the expression of genes that are required for lateral root initiation in rice
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	auxin	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	The Osiaa13 mutant displayed typical auxin-related phenotypes: the number of lateral roots was significantly reduced and the root gravitropic response was defective
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	auxin	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Taken together, our results indicate that OsIAA13 is involved in auxin signaling and controls the expression of genes that are required for lateral root initiation in rice
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	auxin	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	lateral root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	The Osiaa13 mutant displayed typical auxin-related phenotypes: the number of lateral roots was significantly reduced and the root gravitropic response was defective
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	lateral root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Osiaa13 mutants also exhibited altered GUS staining controlled by the DR5 promoter in lateral root initiation sites
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	lateral root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Furthermore, expression levels of several genes that might be associated with lateral root initiation were altered in Osiaa13
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	lateral root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	Taken together, our results indicate that OsIAA13 is involved in auxin signaling and controls the expression of genes that are required for lateral root initiation in rice
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	lateral root	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	auxin	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	The increased accumulation of OsiIAA1 transcript in auxin-treated rice coleoptiles even in the presence of a protein synthesis inhibitor, cycloheximide, suggested that OsiIAA1 is a primary auxin response gene; the expression of OsiIAA1 gene was also upregulated in the presence of cycloheximide alone
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	auxin	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	The OsiIAA1 transcript levels were down-regulated in etiolated rice coleoptiles irradiated with far-red, red and blue light, suggesting the existence of a cross-talk between auxin and light signaling
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	auxin	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	These studies indicate that nuclear localization of OsiIAA1 could be a prerequisite for its role in auxin signal transduction
OsIAA13|OsiIAA1	Os03g0742900	LOC_Os03g53150	auxin	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome
OsIAA17q5	Os05g0230700	LOC_Os05g14180	tiller	Identification of One Major QTL and a Novel Gene OsIAA17q5 Associated with Tiller Number in Rice Using QTL Analysis.	Identification of One Major QTL and a Novel Gene OsIAA17q5 Associated with Tiller Number in Rice Using QTL Analysis.
OsIAA17q5	Os05g0230700	LOC_Os05g14180	tiller number	Identification of One Major QTL and a Novel Gene OsIAA17q5 Associated with Tiller Number in Rice Using QTL Analysis.	Identification of One Major QTL and a Novel Gene OsIAA17q5 Associated with Tiller Number in Rice Using QTL Analysis.
OsIAA18	Os05g0523300	LOC_Os05g44810	drought	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 In this study, the OsIAA18 gene was introduced into the rice cultivar, Zhonghua 11 and the OsIAA18 overexpression in rice plants exhibited significantly enhanced salt and drought tolerance compared to the wild type (WT)
OsIAA18	Os05g0523300	LOC_Os05g44810	drought	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Overexpression of OsIAA18 upregulated the genes involved in ABA biosynthesis and signaling pathways, proline biosynthesis pathway, and reactive oxygen species (ROS)-scavenging system in the overexpression of OsIAA18 in rice plants under salt and drought stresses
OsIAA18	Os05g0523300	LOC_Os05g44810	drought	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Taken together, we suggest that OsIAA18 plays a positive role in drought and salt tolerance by regulating stress-induced ABA signaling
OsIAA18	Os05g0523300	LOC_Os05g44810	salt	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 In this study, the OsIAA18 gene was introduced into the rice cultivar, Zhonghua 11 and the OsIAA18 overexpression in rice plants exhibited significantly enhanced salt and drought tolerance compared to the wild type (WT)
OsIAA18	Os05g0523300	LOC_Os05g44810	salt	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Overexpression of OsIAA18 upregulated the genes involved in ABA biosynthesis and signaling pathways, proline biosynthesis pathway, and reactive oxygen species (ROS)-scavenging system in the overexpression of OsIAA18 in rice plants under salt and drought stresses
OsIAA18	Os05g0523300	LOC_Os05g44810	salt	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Taken together, we suggest that OsIAA18 plays a positive role in drought and salt tolerance by regulating stress-induced ABA signaling
OsIAA18	Os05g0523300	LOC_Os05g44810	tolerance	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 However, little work is known about the regulatory functions of the OsIAA18 gene in regulating the abiotic stress tolerance of rice
OsIAA18	Os05g0523300	LOC_Os05g44810	tolerance	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 In this study, the OsIAA18 gene was introduced into the rice cultivar, Zhonghua 11 and the OsIAA18 overexpression in rice plants exhibited significantly enhanced salt and drought tolerance compared to the wild type (WT)
OsIAA18	Os05g0523300	LOC_Os05g44810	tolerance	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Taken together, we suggest that OsIAA18 plays a positive role in drought and salt tolerance by regulating stress-induced ABA signaling
OsIAA18	Os05g0523300	LOC_Os05g44810	tolerance	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 The OsIAA18 gene has a potential application in genetically modified crops with enhanced tolerance to abiotic stresses
OsIAA18	Os05g0523300	LOC_Os05g44810	abiotic stress	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 However, little work is known about the regulatory functions of the OsIAA18 gene in regulating the abiotic stress tolerance of rice
OsIAA18	Os05g0523300	LOC_Os05g44810	abiotic stress	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 The OsIAA18 gene has a potential application in genetically modified crops with enhanced tolerance to abiotic stresses
OsIAA18	Os05g0523300	LOC_Os05g44810	ABA	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Moreover, overexpression of OsIAA18 in rice increased endogenous levels of abscisic acid (ABA) and the overexpression of OsIAA18 in rice plants showed hypersensitivity to exogenous ABA treatment at both the germination and postgermination stages compared to WT
OsIAA18	Os05g0523300	LOC_Os05g44810	ABA	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Overexpression of OsIAA18 upregulated the genes involved in ABA biosynthesis and signaling pathways, proline biosynthesis pathway, and reactive oxygen species (ROS)-scavenging system in the overexpression of OsIAA18 in rice plants under salt and drought stresses
OsIAA18	Os05g0523300	LOC_Os05g44810	ABA	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Taken together, we suggest that OsIAA18 plays a positive role in drought and salt tolerance by regulating stress-induced ABA signaling
OsIAA18	Os05g0523300	LOC_Os05g44810	drought tolerance	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 In this study, the OsIAA18 gene was introduced into the rice cultivar, Zhonghua 11 and the OsIAA18 overexpression in rice plants exhibited significantly enhanced salt and drought tolerance compared to the wild type (WT)
OsIAA18	Os05g0523300	LOC_Os05g44810	salt tolerance	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Taken together, we suggest that OsIAA18 plays a positive role in drought and salt tolerance by regulating stress-induced ABA signaling
OsIAA18	Os05g0523300	LOC_Os05g44810	stress	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 However, little work is known about the regulatory functions of the OsIAA18 gene in regulating the abiotic stress tolerance of rice
OsIAA18	Os05g0523300	LOC_Os05g44810	biotic stress	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 However, little work is known about the regulatory functions of the OsIAA18 gene in regulating the abiotic stress tolerance of rice
OsIAA18	Os05g0523300	LOC_Os05g44810	biotic stress	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 The OsIAA18 gene has a potential application in genetically modified crops with enhanced tolerance to abiotic stresses
OsIAA18	Os05g0523300	LOC_Os05g44810	abscisic acid	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Moreover, overexpression of OsIAA18 in rice increased endogenous levels of abscisic acid (ABA) and the overexpression of OsIAA18 in rice plants showed hypersensitivity to exogenous ABA treatment at both the germination and postgermination stages compared to WT
OsIAA18	Os05g0523300	LOC_Os05g44810	drought stress	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Overexpression of OsIAA18 upregulated the genes involved in ABA biosynthesis and signaling pathways, proline biosynthesis pathway, and reactive oxygen species (ROS)-scavenging system in the overexpression of OsIAA18 in rice plants under salt and drought stresses
OsIAA18	Os05g0523300	LOC_Os05g44810	reactive oxygen species	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Overexpression of OsIAA18 upregulated the genes involved in ABA biosynthesis and signaling pathways, proline biosynthesis pathway, and reactive oxygen species (ROS)-scavenging system in the overexpression of OsIAA18 in rice plants under salt and drought stresses
OsIAA18	Os05g0523300	LOC_Os05g44810	stress tolerance	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 However, little work is known about the regulatory functions of the OsIAA18 gene in regulating the abiotic stress tolerance of rice
OsIAA18	Os05g0523300	LOC_Os05g44810	 ABA 	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Moreover, overexpression of OsIAA18 in rice increased endogenous levels of abscisic acid (ABA) and the overexpression of OsIAA18 in rice plants showed hypersensitivity to exogenous ABA treatment at both the germination and postgermination stages compared to WT
OsIAA18	Os05g0523300	LOC_Os05g44810	 ABA 	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Overexpression of OsIAA18 upregulated the genes involved in ABA biosynthesis and signaling pathways, proline biosynthesis pathway, and reactive oxygen species (ROS)-scavenging system in the overexpression of OsIAA18 in rice plants under salt and drought stresses
OsIAA18	Os05g0523300	LOC_Os05g44810	 ABA 	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Taken together, we suggest that OsIAA18 plays a positive role in drought and salt tolerance by regulating stress-induced ABA signaling
OsIAA18	Os05g0523300	LOC_Os05g44810	ABA biosynthesis	OsIAA18, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and Drought Tolerance in Rice.	 Overexpression of OsIAA18 upregulated the genes involved in ABA biosynthesis and signaling pathways, proline biosynthesis pathway, and reactive oxygen species (ROS)-scavenging system in the overexpression of OsIAA18 in rice plants under salt and drought stresses
OsIAA20	Os06g0166500	LOC_Os06g07040	shoot	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Knockout of OsbZIP49 led to reduced expression of both OsGH3-2 and OsGH3-13 within the shoot base, and increased accumulation of IAA and increased OsIAA20 expression levels were observed in transformants following gravistimulation
OsIAA20	Os06g0166500	LOC_Os06g07040	iaa	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Knockout of OsbZIP49 led to reduced expression of both OsGH3-2 and OsGH3-13 within the shoot base, and increased accumulation of IAA and increased OsIAA20 expression levels were observed in transformants following gravistimulation
OsIAA20	Os06g0166500	LOC_Os06g07040	IAA	Transcription Factor OsbZIP49 Controls Tiller Angle and Plant Architecture through the Induction of Indole-3-acetic Acid-amido Synthetases in Rice.	Knockout of OsbZIP49 led to reduced expression of both OsGH3-2 and OsGH3-13 within the shoot base, and increased accumulation of IAA and increased OsIAA20 expression levels were observed in transformants following gravistimulation
OsIAA23	Os06g0597000	LOC_Os06g39590	crown root	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	Expression of OsIAA23 is specific to the QC of the root tip during the development of primary, lateral and crown roots
OsIAA23	Os06g0597000	LOC_Os06g39590	crown	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	Expression of OsIAA23 is specific to the QC of the root tip during the development of primary, lateral and crown roots
OsIAA23	Os06g0597000	LOC_Os06g39590	auxin	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	Consistent with OsIAA23 expression in the QC, the auxin signaling marked by DR5p::GUS (ss-glucuronidase) was absent in the QC region of Osiaa23
OsIAA23	Os06g0597000	LOC_Os06g39590	auxin	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	These results indicate that the maintenance of the QC is dependent on OsIAA23-mediated auxin signaling in the QC
OsIAA23	Os06g0597000	LOC_Os06g39590	auxin	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice
OsIAA23	Os06g0597000	LOC_Os06g39590	root	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	Expression of OsIAA23 is specific to the QC of the root tip during the development of primary, lateral and crown roots
OsIAA23	Os06g0597000	LOC_Os06g39590	iaa	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	The mutant is characterized by a loss of QC identity during postembryonic development, and the displayed defects result from a stabilizing mutation in domain II of OsIAA23 (Os06g39590)
OsIAA23	Os06g0597000	LOC_Os06g39590	iaa	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	Expression of OsIAA23 is specific to the QC of the root tip during the development of primary, lateral and crown roots
OsIAA23	Os06g0597000	LOC_Os06g39590	iaa	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	Consistent with OsIAA23 expression in the QC, the auxin signaling marked by DR5p::GUS (ss-glucuronidase) was absent in the QC region of Osiaa23
OsIAA23	Os06g0597000	LOC_Os06g39590	iaa	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	Transgenic rice plants harboring Osiaa23 under the control of the QHB promoter mimic partially the defects of Osiaa23
OsIAA23	Os06g0597000	LOC_Os06g39590	iaa	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	These results indicate that the maintenance of the QC is dependent on OsIAA23-mediated auxin signaling in the QC
OsIAA23	Os06g0597000	LOC_Os06g39590	iaa	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice	OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice
OsIAA23	Os06g0597000	LOC_Os06g39590	development	Different knockout genotypes of OsIAA23 in rice using CRISPR/Cas9 generating different phenotypes.	In rice, the gene OsIAA23 (Os06t0597000) is known to affect development of roots and shoots, but previous knockouts in OsIAA23 have been sterile and difficult for research continuously
OsIAA23	Os06g0597000	LOC_Os06g39590	sterile	Different knockout genotypes of OsIAA23 in rice using CRISPR/Cas9 generating different phenotypes.	In rice, the gene OsIAA23 (Os06t0597000) is known to affect development of roots and shoots, but previous knockouts in OsIAA23 have been sterile and difficult for research continuously
OsIAA25	Os08g0109400	LOC_Os08g01780	IAA signaling	The suppressed expression of a stress responsive gene 'OsDSR2' enhances rice tolerance in drought and salt stress	The suppressed expression of a stress responsive gene 'OsDSR2' enhances rice tolerance in drought and salt stress
OsIAA3	Os01g0231000	LOC_Os01g13030	auxin	Production and characterization of auxin-insensitive rice by overexpression of a mutagenized rice IAA protein	OsIAA3 is one of these family members whose expression is rapidly increased in response to auxin
OsIAA3	Os01g0231000	LOC_Os01g13030	iaa	Production and characterization of auxin-insensitive rice by overexpression of a mutagenized rice IAA protein	OsIAA3 is one of these family members whose expression is rapidly increased in response to auxin
OsIAA3	Os01g0231000	LOC_Os01g13030	iaa	Production and characterization of auxin-insensitive rice by overexpression of a mutagenized rice IAA protein	We produced transgenic rice harboring mOsIAA3-GR, which can overproduce mutant OsIAA3 protein containing an amino acid change in domain II to cause a gain-of-function phenotype, by treatment with dexamethasone
OsIAA3	Os01g0231000	LOC_Os01g13030	root	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Ethylene produced in response to exogenous KT inhibited rice seminal root growth by reducing meristem size via upregulation of OsIAA3 transcription and reduced cell length by downregulating transcription of cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	root	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Moreover, the effects of KT treatment on rice seminal root growth, root meristem size and cell length were rescued by treatment with aminoethoxyvinylglycine (an inhibitor of ethylene biosynthesis), which restored ethylene level and transcription levels of OsIAA3 and cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	growth	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Ethylene produced in response to exogenous KT inhibited rice seminal root growth by reducing meristem size via upregulation of OsIAA3 transcription and reduced cell length by downregulating transcription of cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	ethylene	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Ethylene produced in response to exogenous KT inhibited rice seminal root growth by reducing meristem size via upregulation of OsIAA3 transcription and reduced cell length by downregulating transcription of cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	ethylene	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Moreover, the effects of KT treatment on rice seminal root growth, root meristem size and cell length were rescued by treatment with aminoethoxyvinylglycine (an inhibitor of ethylene biosynthesis), which restored ethylene level and transcription levels of OsIAA3 and cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	meristem	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Ethylene produced in response to exogenous KT inhibited rice seminal root growth by reducing meristem size via upregulation of OsIAA3 transcription and reduced cell length by downregulating transcription of cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	meristem	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Moreover, the effects of KT treatment on rice seminal root growth, root meristem size and cell length were rescued by treatment with aminoethoxyvinylglycine (an inhibitor of ethylene biosynthesis), which restored ethylene level and transcription levels of OsIAA3 and cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	cell elongation	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Ethylene produced in response to exogenous KT inhibited rice seminal root growth by reducing meristem size via upregulation of OsIAA3 transcription and reduced cell length by downregulating transcription of cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	cell elongation	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Moreover, the effects of KT treatment on rice seminal root growth, root meristem size and cell length were rescued by treatment with aminoethoxyvinylglycine (an inhibitor of ethylene biosynthesis), which restored ethylene level and transcription levels of OsIAA3 and cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	root meristem	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Moreover, the effects of KT treatment on rice seminal root growth, root meristem size and cell length were rescued by treatment with aminoethoxyvinylglycine (an inhibitor of ethylene biosynthesis), which restored ethylene level and transcription levels of OsIAA3 and cell elongation-related genes
OsIAA3	Os01g0231000	LOC_Os01g13030	root meristem size	Supraoptimal Cytokinin Content Inhibits Rice Seminal Root Growth by Reducing Root Meristem Size and Cell Length via Increased Ethylene Content.	Moreover, the effects of KT treatment on rice seminal root growth, root meristem size and cell length were rescued by treatment with aminoethoxyvinylglycine (an inhibitor of ethylene biosynthesis), which restored ethylene level and transcription levels of OsIAA3 and cell elongation-related genes
OsIAA4	Os01g0286900	LOC_Os01g18360	auxin	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin	OsIAA4-overexpressing rice plants show dwarfism, increased tiller angles, reduced gravity response, and are less sensitive to synthetic auxin 2,4-dichlorophenoxyacetic acid (2,4-D)
OsIAA4	Os01g0286900	LOC_Os01g18360	auxin	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin
OsIAA4	Os01g0286900	LOC_Os01g18360	dwarf	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin	OsIAA4-overexpressing rice plants show dwarfism, increased tiller angles, reduced gravity response, and are less sensitive to synthetic auxin 2,4-dichlorophenoxyacetic acid (2,4-D)
OsIAA4	Os01g0286900	LOC_Os01g18360	auxin	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	The lines with overexpression showed constitutive expression of many defense-related genes, such as PBZ1 and OsSci2, as well as early auxin-response genes, such as OsIAA4 and OsCrl1 genes
OsIAA4	Os01g0286900	LOC_Os01g18360	tiller angle	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin	OsIAA4-overexpressing rice plants show dwarfism, increased tiller angles, reduced gravity response, and are less sensitive to synthetic auxin 2,4-dichlorophenoxyacetic acid (2,4-D)
OsIAA4	Os01g0286900	LOC_Os01g18360	iaa	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	The lines with overexpression showed constitutive expression of many defense-related genes, such as PBZ1 and OsSci2, as well as early auxin-response genes, such as OsIAA4 and OsCrl1 genes
OsIAA4	Os01g0286900	LOC_Os01g18360	tiller	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin	OsIAA4-overexpressing rice plants show dwarfism, increased tiller angles, reduced gravity response, and are less sensitive to synthetic auxin 2,4-dichlorophenoxyacetic acid (2,4-D)
OsIAA4	Os01g0286900	LOC_Os01g18360	defense	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	The lines with overexpression showed constitutive expression of many defense-related genes, such as PBZ1 and OsSci2, as well as early auxin-response genes, such as OsIAA4 and OsCrl1 genes
OsIAA4	Os01g0286900	LOC_Os01g18360	iaa	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin	In this study, we isolated and identified an Aux/IAA protein gene from rice, OsIAA4, whose protein contains a dominant mutation-type domain II
OsIAA4	Os01g0286900	LOC_Os01g18360	iaa	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin	OsIAA4 has very low expression in the entire life cycle of rice
OsIAA4	Os01g0286900	LOC_Os01g18360	iaa	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin	OsIAA4-overexpressing rice plants show dwarfism, increased tiller angles, reduced gravity response, and are less sensitive to synthetic auxin 2,4-dichlorophenoxyacetic acid (2,4-D)
OsIAA4	Os01g0286900	LOC_Os01g18360	iaa	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin
OsIAA9	Os02g0805100	LOC_Os02g56120	gravitropic response	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
OsIAA9	Os02g0805100	LOC_Os02g56120	gravitropic response	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Transgenic Arabidopsis plants expressing OsIAA9 have increased number of lateral roots, and reduced gravitropic response
OsIAA9	Os02g0805100	LOC_Os02g56120	gravitropic response	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Taken together, our study showed that OsIAA9 is a transcriptional repressor, and it regulates gravitropic response when expressed in Arabidopsis by regulating granules accumulation and distribution in root tips
OsIAA9	Os02g0805100	LOC_Os02g56120	root	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
OsIAA9	Os02g0805100	LOC_Os02g56120	root	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Further analysis showed that OsIAA9 transgenic Arabidopsis plants accumulated fewer granules in their root tips and the distribution of granules was also affected
OsIAA9	Os02g0805100	LOC_Os02g56120	root	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Taken together, our study showed that OsIAA9 is a transcriptional repressor, and it regulates gravitropic response when expressed in Arabidopsis by regulating granules accumulation and distribution in root tips
OsIAA9	Os02g0805100	LOC_Os02g56120	starch	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
OsIAA9	Os02g0805100	LOC_Os02g56120	auxin	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	RT-PCR results showed that expression of OsIAA9 was induced by exogenously applied auxin, suggesting that OsIAA9 is an auxin response gene
OsIAA9	Os02g0805100	LOC_Os02g56120	iaa	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	When transfected into protoplasts isolated from rosette leaves of Arabidopsis, OsIAA9 repressed reporter gene expression, and the repression was partially released by exogenously IAA
OsIAA9	Os02g0805100	LOC_Os02g56120	nucleus	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	By generating transgenic plants expressing GFP-OsIAA9 and examining florescence in the transgenic plants, we found that OsIAA9 is localized in the nucleus
OsIAA9	Os02g0805100	LOC_Os02g56120	R protein	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Bioinformatic analysis showed that OsIAA9 has a repressor motif in Domain I, a degron in Domain II, and the conserved amino acid signatures for protein-protein interactions in Domain III and Domain IV
OsIAA9	Os02g0805100	LOC_Os02g56120	lateral root	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Transgenic Arabidopsis plants expressing OsIAA9 have increased number of lateral roots, and reduced gravitropic response
OsIAA9	Os02g0805100	LOC_Os02g56120	IAA	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	When transfected into protoplasts isolated from rosette leaves of Arabidopsis, OsIAA9 repressed reporter gene expression, and the repression was partially released by exogenously IAA
OsIAA9	Os02g0805100	LOC_Os02g56120	auxin response	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	RT-PCR results showed that expression of OsIAA9 was induced by exogenously applied auxin, suggesting that OsIAA9 is an auxin response gene
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	flower	Tiller formation in rice is altered by overexpression of OsIAGLU gene encoding an IAA-conjugating enzyme or exogenous treatment of free IAA	The OsIAGLU gene driven by the Cauliflower Mosaic Virus 35S promoter was transformed into a rice cultivar to generate transgenic rice plants constitutively over-expressing this gene
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	Tiller formation in rice is altered by overexpression of OsIAGLU gene encoding an IAA-conjugating enzyme or exogenous treatment of free IAA	To decrease IAA levels, we selected the rice IAA-glucose synthase gene (OsIAGLU) from the rice genome database based on high sequence homology with IAA-glucose synthase from maize (ZmIAGLU), which is known to generate IAAglucose conjugate from free IAA
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	Tiller formation in rice is altered by overexpression of OsIAGLU gene encoding an IAA-conjugating enzyme or exogenous treatment of free IAA	Tiller formation in rice is altered by overexpression of OsIAGLU gene encoding an IAA-conjugating enzyme or exogenous treatment of free IAA
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	tiller	Tiller formation in rice is altered by overexpression of OsIAGLU gene encoding an IAA-conjugating enzyme or exogenous treatment of free IAA	Tiller formation in rice is altered by overexpression of OsIAGLU gene encoding an IAA-conjugating enzyme or exogenous treatment of free IAA
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	leaf	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	The number of tillers and leaf angle was significantly increased with a concomitant decrease in plant height and panicle length in the transgenic rice lines overexpressing OsIAAGLU compared to the wild-type (WT) plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	gravitropic response	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	Furthermore, overexpression of OsIAAGLU resulted in reduced sensitivity to IAA/NAA and altered gravitropic response of the roots in the transgenic plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	root	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	Overexpression of OsIAAGLU in rice resulted in altered rice shoot architecture and root gravitropism
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	shoot	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	Overexpression of OsIAAGLU in rice resulted in altered rice shoot architecture and root gravitropism
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	panicle	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	The number of tillers and leaf angle was significantly increased with a concomitant decrease in plant height and panicle length in the transgenic rice lines overexpressing OsIAAGLU compared to the wild-type (WT) plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	architecture	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	Overexpression of OsIAAGLU in rice resulted in altered rice shoot architecture and root gravitropism
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	architecture	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	These results support that OsIAAGLU could play a regulatory role in IAA homeostasis and rice architecture
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	OsIAAGLU could catalyze the reaction of IAA with glucose to generate IAA-glucose
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	Expression of OsIAAGLU could be induced by IAA and NAA
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	These results support that OsIAAGLU could play a regulatory role in IAA homeostasis and rice architecture
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	homeostasis	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	These results support that OsIAAGLU could play a regulatory role in IAA homeostasis and rice architecture
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	height	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	The number of tillers and leaf angle was significantly increased with a concomitant decrease in plant height and panicle length in the transgenic rice lines overexpressing OsIAAGLU compared to the wild-type (WT) plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	plant height	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	The number of tillers and leaf angle was significantly increased with a concomitant decrease in plant height and panicle length in the transgenic rice lines overexpressing OsIAAGLU compared to the wild-type (WT) plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	IAA	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	OsIAAGLU could catalyze the reaction of IAA with glucose to generate IAA-glucose
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	IAA	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	Expression of OsIAAGLU could be induced by IAA and NAA
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	IAA	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	These results support that OsIAAGLU could play a regulatory role in IAA homeostasis and rice architecture
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	plant architecture	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	shoot architecture	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	Overexpression of OsIAAGLU in rice resulted in altered rice shoot architecture and root gravitropism
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	root	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Consistently, ectopic expression of OsIAGT1 leads to declined endogenous IAA content, as well as upregulated auxin synthesis genes and reduced expression of auxin-responsive genes, which likely leads to the reduced plant stature and root length in OsIAGT1 overexpression lines
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	growth	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Our result indicated that OsIAGT1 plays an important role in mediating auxin homeostasis by catalyzing auxin glucosylation, and by which OsIAGT1 regulates growth and development in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	auxin	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	In vitro enzymatic analysis showed that recombinant OsIAGT1 was capable of catalyzing glucosylation of IAA, IBA and other auxin analogs, and that OsIAGT1 is quite tolerant to a broad range of reaction conditions with peak activity at 30 and pH8
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	auxin	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Further study indicated that expression of OsIAGT1 can be upregulated by auxin in rice, and with OsIAGT1 overexpressing lines we confirmed that OsIAGT1 is indeed able to glucosylate IAA in vivo
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	auxin	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Consistently, ectopic expression of OsIAGT1 leads to declined endogenous IAA content, as well as upregulated auxin synthesis genes and reduced expression of auxin-responsive genes, which likely leads to the reduced plant stature and root length in OsIAGT1 overexpression lines
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	auxin	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Our result indicated that OsIAGT1 plays an important role in mediating auxin homeostasis by catalyzing auxin glucosylation, and by which OsIAGT1 regulates growth and development in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	development	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Our result indicated that OsIAGT1 plays an important role in mediating auxin homeostasis by catalyzing auxin glucosylation, and by which OsIAGT1 regulates growth and development in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Further study indicated that expression of OsIAGT1 can be upregulated by auxin in rice, and with OsIAGT1 overexpressing lines we confirmed that OsIAGT1 is indeed able to glucosylate IAA in vivo
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Consistently, ectopic expression of OsIAGT1 leads to declined endogenous IAA content, as well as upregulated auxin synthesis genes and reduced expression of auxin-responsive genes, which likely leads to the reduced plant stature and root length in OsIAGT1 overexpression lines
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	homeostasis	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Our result indicated that OsIAGT1 plays an important role in mediating auxin homeostasis by catalyzing auxin glucosylation, and by which OsIAGT1 regulates growth and development in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	IAA	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Further study indicated that expression of OsIAGT1 can be upregulated by auxin in rice, and with OsIAGT1 overexpressing lines we confirmed that OsIAGT1 is indeed able to glucosylate IAA in vivo
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	IAA	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Consistently, ectopic expression of OsIAGT1 leads to declined endogenous IAA content, as well as upregulated auxin synthesis genes and reduced expression of auxin-responsive genes, which likely leads to the reduced plant stature and root length in OsIAGT1 overexpression lines
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	root length	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Consistently, ectopic expression of OsIAGT1 leads to declined endogenous IAA content, as well as upregulated auxin synthesis genes and reduced expression of auxin-responsive genes, which likely leads to the reduced plant stature and root length in OsIAGT1 overexpression lines
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	plant stature	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Consistently, ectopic expression of OsIAGT1 leads to declined endogenous IAA content, as well as upregulated auxin synthesis genes and reduced expression of auxin-responsive genes, which likely leads to the reduced plant stature and root length in OsIAGT1 overexpression lines
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	auxin	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	seed	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	seed	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	In this study, indole-3-acetate beta-glucosyltransferase OsIAGLU was cloned in rice, and its roles on seed vigor were mainly investigated
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	seed	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	Disruption of OsIAGLU resulted in low seed vigor in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	seed	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	Transcriptome analysis revealed that the IAA- and ABA-related genes were involved in the OsIAGLU regulation of seed vigor in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	seed	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	When treated with exogenous IAA and ABA, the osiaglu mutants and WT plants showed sensitivity to ABA while not IAA, but the exogenous IAA amplified ABA-induced reduction of seed vigor in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	seed	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The regulation of seed vigor by OsIAGLU might be through modulating IAA and ABA levels to alert OsABIs expression in germinating seeds in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	seed	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	Based on analysis of single-nucleotide polymorphism data of rice accessions, two haplotypes of OsIAGLU that positively correlated with seed vigor were identified in indica accessions
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	seed	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	This study provides important insights into the roles of OsIAGLU on seed vigor and facilitates the practical use of OsIAGLU in rice breeding
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	ABA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The higher levels of free IAA and ABA were identified in germinating seeds of osiaglu mutants compared to wide-type (WT) plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	ABA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	When treated with exogenous IAA and ABA, the osiaglu mutants and WT plants showed sensitivity to ABA while not IAA, but the exogenous IAA amplified ABA-induced reduction of seed vigor in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	ABA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The continuously higher expressions of ABA INSENSITIVE 3 (OsABI3) and OsABI5 occurred in germinating seeds of osiaglu mutants compared to WT plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	ABA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The regulation of seed vigor by OsIAGLU might be through modulating IAA and ABA levels to alert OsABIs expression in germinating seeds in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The higher levels of free IAA and ABA were identified in germinating seeds of osiaglu mutants compared to wide-type (WT) plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	When treated with exogenous IAA and ABA, the osiaglu mutants and WT plants showed sensitivity to ABA while not IAA, but the exogenous IAA amplified ABA-induced reduction of seed vigor in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	iaa	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The regulation of seed vigor by OsIAGLU might be through modulating IAA and ABA levels to alert OsABIs expression in germinating seeds in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	abscisic acid	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	abscisic acid	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	Quantitative RT-PCR analysis showed that the expressions of OsIAGLU were relatively higher in the late developing and the early germinating seeds and were significantly induced by indole-3-acetic acid (IAA) and abscisic acid (ABA)
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	breeding	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	This study provides important insights into the roles of OsIAGLU on seed vigor and facilitates the practical use of OsIAGLU in rice breeding
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	ABA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The higher levels of free IAA and ABA were identified in germinating seeds of osiaglu mutants compared to wide-type (WT) plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	ABA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	When treated with exogenous IAA and ABA, the osiaglu mutants and WT plants showed sensitivity to ABA while not IAA, but the exogenous IAA amplified ABA-induced reduction of seed vigor in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	ABA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The continuously higher expressions of ABA INSENSITIVE 3 (OsABI3) and OsABI5 occurred in germinating seeds of osiaglu mutants compared to WT plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	ABA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The regulation of seed vigor by OsIAGLU might be through modulating IAA and ABA levels to alert OsABIs expression in germinating seeds in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	IAA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The higher levels of free IAA and ABA were identified in germinating seeds of osiaglu mutants compared to wide-type (WT) plants
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	IAA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	When treated with exogenous IAA and ABA, the osiaglu mutants and WT plants showed sensitivity to ABA while not IAA, but the exogenous IAA amplified ABA-induced reduction of seed vigor in rice
OsIAAGLU|OsIAGT1	Os03g0693600	LOC_Os03g48740	IAA	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigor through mediating crosstalk between auxin and abscisic acid in rice.	The regulation of seed vigor by OsIAGLU might be through modulating IAA and ABA levels to alert OsABIs expression in germinating seeds in rice
OSIAGP	Os06g0319133	LOC_Os06g21410	growth	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	The homology of OSIAGP with AGP23 and the fact that seedling growth in the dark and pollen tube growth are events based on cell elongation strengthen the possibility of OSIAGP performing a similar function
OSIAGP	Os06g0319133	LOC_Os06g21410	growth	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth
OSIAGP	Os06g0319133	LOC_Os06g21410	seedling	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	OSIAGP transcripts also accumulate in shoots and roots of rice seedling grown in the dark, but light represses expression of the gene
OSIAGP	Os06g0319133	LOC_Os06g21410	seedling	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	The homology of OSIAGP with AGP23 and the fact that seedling growth in the dark and pollen tube growth are events based on cell elongation strengthen the possibility of OSIAGP performing a similar function
OSIAGP	Os06g0319133	LOC_Os06g21410	pollen	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	Analysis of a genomic clone of OSIAGP revealed that its promoter contains several pollen-specificity and light-regulatory elements
OSIAGP	Os06g0319133	LOC_Os06g21410	pollen	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	The homology of OSIAGP with AGP23 and the fact that seedling growth in the dark and pollen tube growth are events based on cell elongation strengthen the possibility of OSIAGP performing a similar function
OSIAGP	Os06g0319133	LOC_Os06g21410	pollen	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth
OSIAGP	Os06g0319133	LOC_Os06g21410	cell elongation	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	The homology of OSIAGP with AGP23 and the fact that seedling growth in the dark and pollen tube growth are events based on cell elongation strengthen the possibility of OSIAGP performing a similar function
OSIAGP	Os06g0319133	LOC_Os06g21410	inflorescence	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	During differential screening of inflorescence-specific cDNA libraries from Oryza sativa indica, an arabinogalactan protein (OSIAGP) cDNA (586 bp) expressing preferentially in the inflorescence has been isolated
OSIAGP	Os06g0319133	LOC_Os06g21410	root	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	OSIAGP transcripts also accumulate in shoots and roots of rice seedling grown in the dark, but light represses expression of the gene
OSIAGP	Os06g0319133	LOC_Os06g21410	shoot	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth	OSIAGP transcripts also accumulate in shoots and roots of rice seedling grown in the dark, but light represses expression of the gene
OsiBBC1	Os03g0576700	LOC_Os03g37970	leaf	Molecular characterization of a light-responsive gene, breast basic conserved protein 1 (OsiBBC1), encoding nuclear-localized protein homologous to ribosomal protein L13 from Oryza sativa indica	Northern analysis showed that OsiBBC1 is expressed more in the young root, post-fertilized influorescence, leaf base and callus tissue, which are comprised of actively dividing cells, indicating its role in cell division
OsiBBC1	Os03g0576700	LOC_Os03g37970	shoot	Molecular characterization of a light-responsive gene, breast basic conserved protein 1 (OsiBBC1), encoding nuclear-localized protein homologous to ribosomal protein L13 from Oryza sativa indica	The OsiBBC1 transcript accumulated more in the root of light-grown seedlings as compared to the shoot while its levels were higher in the shoot as compared to root of the etiolated seedlings, indicating its down-regulation by light
OsiBBC1	Os03g0576700	LOC_Os03g37970	cell division	Molecular characterization of a light-responsive gene, breast basic conserved protein 1 (OsiBBC1), encoding nuclear-localized protein homologous to ribosomal protein L13 from Oryza sativa indica	Northern analysis showed that OsiBBC1 is expressed more in the young root, post-fertilized influorescence, leaf base and callus tissue, which are comprised of actively dividing cells, indicating its role in cell division
OsiBBC1	Os03g0576700	LOC_Os03g37970	seedling	Molecular characterization of a light-responsive gene, breast basic conserved protein 1 (OsiBBC1), encoding nuclear-localized protein homologous to ribosomal protein L13 from Oryza sativa indica	The OsiBBC1 transcript accumulated more in the root of light-grown seedlings as compared to the shoot while its levels were higher in the shoot as compared to root of the etiolated seedlings, indicating its down-regulation by light
OsiBBC1	Os03g0576700	LOC_Os03g37970	root	Molecular characterization of a light-responsive gene, breast basic conserved protein 1 (OsiBBC1), encoding nuclear-localized protein homologous to ribosomal protein L13 from Oryza sativa indica	Northern analysis showed that OsiBBC1 is expressed more in the young root, post-fertilized influorescence, leaf base and callus tissue, which are comprised of actively dividing cells, indicating its role in cell division
OsiBBC1	Os03g0576700	LOC_Os03g37970	root	Molecular characterization of a light-responsive gene, breast basic conserved protein 1 (OsiBBC1), encoding nuclear-localized protein homologous to ribosomal protein L13 from Oryza sativa indica	The OsiBBC1 transcript accumulated more in the root of light-grown seedlings as compared to the shoot while its levels were higher in the shoot as compared to root of the etiolated seedlings, indicating its down-regulation by light
OsIBH1|IBH1	Os04g0660100	LOC_Os04g56500	cell elongation	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	Overexpression of ILI1 or PRE1 increases cell elongation and suppresses dwarf phenotypes caused by overexpression of IBH1 in Arabidopsis
OsIBH1|IBH1	Os04g0660100	LOC_Os04g56500	dwarf	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	ILI1 and PRE1 interact with basic helix-loop-helix (bHLH) protein IBH1 (ILI1 binding bHLH), whose overexpression causes erect leaf in rice and dwarfism in Arabidopsis
OsIBH1|IBH1	Os04g0660100	LOC_Os04g56500	dwarf	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	Overexpression of ILI1 or PRE1 increases cell elongation and suppresses dwarf phenotypes caused by overexpression of IBH1 in Arabidopsis
OsIBH1|IBH1	Os04g0660100	LOC_Os04g56500	transcription factor	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	BR increases the RNA levels of ILI1 and PRE1 but represses IBH1 through the transcription factor BZR1
OsIBH1|IBH1	Os04g0660100	LOC_Os04g56500	BR	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	BR increases the RNA levels of ILI1 and PRE1 but represses IBH1 through the transcription factor BZR1
OsIBH1|IBH1	Os04g0660100	LOC_Os04g56500	erect	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	ILI1 and PRE1 interact with basic helix-loop-helix (bHLH) protein IBH1 (ILI1 binding bHLH), whose overexpression causes erect leaf in rice and dwarfism in Arabidopsis
OsIBH1|IBH1	Os04g0660100	LOC_Os04g56500	leaf	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	ILI1 and PRE1 interact with basic helix-loop-helix (bHLH) protein IBH1 (ILI1 binding bHLH), whose overexpression causes erect leaf in rice and dwarfism in Arabidopsis
OsIBH1|IBH1	Os04g0660100	LOC_Os04g56500	growth	Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis	The spatial and temporal expression patterns support roles of ILI1 in laminar joint bending and PRE1/At IBH1 in the transition from growth of young organs to growth arrest
OsIBR5	Os06g0308100	LOC_Os06g20340	abiotic stress	Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum	These results indicated that OsIBR5 is a MKP which was induced by abiotic stresses and decreased tolerance to drought stress in transgenic tobacco plants
OsIBR5	Os06g0308100	LOC_Os06g20340	stomata	Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum	Drought and ABA-induced stomatal closure was significantly reduced in OsIBR5-overexpressing tobacco plants compared with controls
OsIBR5	Os06g0308100	LOC_Os06g20340	drought	Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum	Overexpression of OsIBR5 in tobacco plants resulted in hypersensitivity to drought and H(2)O(2) treatments
OsIBR5	Os06g0308100	LOC_Os06g20340	drought	Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum	Drought and ABA-induced stomatal closure was significantly reduced in OsIBR5-overexpressing tobacco plants compared with controls
OsIBR5	Os06g0308100	LOC_Os06g20340	drought	Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum	Moreover, OsIBR5 was found to interact with tobacco MAPKs SIPK and WIPK, and drought-induced WIPK activity was impaired in OsIBR5-overexpressing tobacco plants
OsIBR5	Os06g0308100	LOC_Os06g20340	drought	Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum	These results indicated that OsIBR5 is a MKP which was induced by abiotic stresses and decreased tolerance to drought stress in transgenic tobacco plants
OsIBR5	Os06g0308100	LOC_Os06g20340	stomatal	Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum	Drought and ABA-induced stomatal closure was significantly reduced in OsIBR5-overexpressing tobacco plants compared with controls
OsICE1|OsbHLH002	Os11g0523700	LOC_Os11g32100	cold stress	Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation	In contrast to the proteins, cold stress had little or no effect on the expression of OsICE1 and OsICE2
OsICE1|OsbHLH002	Os11g0523700	LOC_Os11g32100	transcription factor	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Furthermore, we showed that both OsICE1 and OsICE2 physically interact with OsMYBS3, a single DNA-binding repeat MYB transcription factor that is essential for cold adaptation in rice, suggesting that OsICE1/OsICE2 and OsMYBS3 probably act through specific signal transduction mechanisms to coordinate cold tolerance in rice
OsICE1|OsbHLH002	Os11g0523700	LOC_Os11g32100	seedlings	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Overexpression of OsICE1 and OsICE2 in Arabidopsis significantly enhanced the cold tolerance of Arabidopsis seedlings and improved the expression of cold-response genes
OsICE1|OsbHLH002	Os11g0523700	LOC_Os11g32100	tolerance	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Overexpression of OsICE1 and OsICE2 in Arabidopsis significantly enhanced the cold tolerance of Arabidopsis seedlings and improved the expression of cold-response genes
OsICE1|OsbHLH002	Os11g0523700	LOC_Os11g32100	tolerance	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Furthermore, we showed that both OsICE1 and OsICE2 physically interact with OsMYBS3, a single DNA-binding repeat MYB transcription factor that is essential for cold adaptation in rice, suggesting that OsICE1/OsICE2 and OsMYBS3 probably act through specific signal transduction mechanisms to coordinate cold tolerance in rice
OsICE1|OsbHLH002	Os11g0523700	LOC_Os11g32100	cold tolerance	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Overexpression of OsICE1 and OsICE2 in Arabidopsis significantly enhanced the cold tolerance of Arabidopsis seedlings and improved the expression of cold-response genes
OsICE1|OsbHLH002	Os11g0523700	LOC_Os11g32100	cold tolerance	The Rice Transcription Factors OsICE Confer Enhanced Cold Tolerance in Transgenic Arabidopsis.	Furthermore, we showed that both OsICE1 and OsICE2 physically interact with OsMYBS3, a single DNA-binding repeat MYB transcription factor that is essential for cold adaptation in rice, suggesting that OsICE1/OsICE2 and OsMYBS3 probably act through specific signal transduction mechanisms to coordinate cold tolerance in rice
OsIDD10|OsNKD	Os04g0566400	LOC_Os04g47860	leaf patterning	Mutations in NAKED-ENDOSPERM IDD genes reveal functional interactions with SCARECROW during leaf patterning in C4 grasses	Mutations in NAKED-ENDOSPERM IDD genes reveal functional interactions with SCARECROW during leaf patterning in C4 grasses
OsIDD2	Os01g0195000|Os01g0195066	LOC_Os01g09850	lignin	OsIDD2, a zinc finger and INDETERMINATE DOMAIN protein regulates secondary cell wall formation(FA).	The transient expression assay using rice protoplasts revealed that OsIDD2 negatively regulates the transcription of genes involved in lignin biosynthesis, cinnamyl alcohol dehydrogenase 2 and 3 (CAD2 and 3), and sucrose metabolism, sucrose synthase 5 (SUS5), whereas an AlphaScreen assay, which can detect the interaction between TFs and their target DNA sequences, directly confirmed the interaction between OsIDD2 and the target sequences located in the promoter regions of CAD2 and CAD3
OsIDD2	Os01g0195000|Os01g0195066	LOC_Os01g09850	lignin biosynthesis	OsIDD2, a zinc finger and INDETERMINATE DOMAIN protein regulates secondary cell wall formation(FA).	The transient expression assay using rice protoplasts revealed that OsIDD2 negatively regulates the transcription of genes involved in lignin biosynthesis, cinnamyl alcohol dehydrogenase 2 and 3 (CAD2 and 3), and sucrose metabolism, sucrose synthase 5 (SUS5), whereas an AlphaScreen assay, which can detect the interaction between TFs and their target DNA sequences, directly confirmed the interaction between OsIDD2 and the target sequences located in the promoter regions of CAD2 and CAD3
OsIDD2	Os01g0195000|Os01g0195066	LOC_Os01g09850	sucrose	OsIDD2, a zinc finger and INDETERMINATE DOMAIN protein regulates secondary cell wall formation(FA).	The transient expression assay using rice protoplasts revealed that OsIDD2 negatively regulates the transcription of genes involved in lignin biosynthesis, cinnamyl alcohol dehydrogenase 2 and 3 (CAD2 and 3), and sucrose metabolism, sucrose synthase 5 (SUS5), whereas an AlphaScreen assay, which can detect the interaction between TFs and their target DNA sequences, directly confirmed the interaction between OsIDD2 and the target sequences located in the promoter regions of CAD2 and CAD3
OsIDD6	Os08g0554400	LOC_Os08g44050	flowering	Suppressor of rid1 (SID1) shares common targets with RID1 on florigen genes to initiate floral transition in rice.	Gain-of-function of SID1, OsIDD1, or OsIDD6 could restore the rid1 to flowering.
OsIDS1	Os03g0818800	LOC_Os03g60430	meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
OsIDS1	Os03g0818800	LOC_Os03g60430	meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
OsIDS1	Os03g0818800	LOC_Os03g60430	meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
OsIDS1	Os03g0818800	LOC_Os03g60430	architecture	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
OsIDS1	Os03g0818800	LOC_Os03g60430	architecture	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
OsIDS1	Os03g0818800	LOC_Os03g60430	panicle	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
OsIDS1	Os03g0818800	LOC_Os03g60430	inflorescence	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
OsIDS1	Os03g0818800	LOC_Os03g60430	inflorescence	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
OsIDS1	Os03g0818800	LOC_Os03g60430	inflorescence architecture	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
OsIDS1	Os03g0818800	LOC_Os03g60430	inflorescence architecture	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
OsIDS1	Os03g0818800	LOC_Os03g60430	floral	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
OsIDS1	Os03g0818800	LOC_Os03g60430	floral	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
OsIDS1	Os03g0818800	LOC_Os03g60430	floral	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Expression analyses showed that SNB and OsIDS1 are required for spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules
OsIDS1	Os03g0818800	LOC_Os03g60430	floral	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
OsIDS1	Os03g0818800	LOC_Os03g60430	spikelet	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
OsIDS1	Os03g0818800	LOC_Os03g60430	spikelet	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
OsIDS1	Os03g0818800	LOC_Os03g60430	spikelet	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
OsIDS1	Os03g0818800	LOC_Os03g60430	floral meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
OsIDS1	Os03g0818800	LOC_Os03g60430	floral meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
OsIDS1	Os03g0818800	LOC_Os03g60430	floral meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	seed	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development	Expression studies revealed that the OsiEZ1 transcript level was highest in rice flowers, almost undetectable in developing seeds of 1-2 days post-fertilization but increased significantly in young seeds of 3-5 days post-fertilization
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	seed	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development	The OsiEZ1 transcript was barely detectable in mature zygotic embryos, but its levels were significantly higher in callus derived from rice scutellum, somatic embryos and young seedlings
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	seed	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	flower	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development	Expression studies revealed that the OsiEZ1 transcript level was highest in rice flowers, almost undetectable in developing seeds of 1-2 days post-fertilization but increased significantly in young seeds of 3-5 days post-fertilization
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	seedling	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development	The OsiEZ1 transcript was barely detectable in mature zygotic embryos, but its levels were significantly higher in callus derived from rice scutellum, somatic embryos and young seedlings
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	seedling	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	seedling	OsSET1, a novel SET-domain-containing gene from rice	Over-expression of the SET domain of OsSET1 in Arabidopsis resulted in altered shoot development at seedling stages
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	shoot	OsSET1, a novel SET-domain-containing gene from rice	Over-expression of the SET domain of OsSET1 in Arabidopsis resulted in altered shoot development at seedling stages
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	reproductive	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development
OsiEZ1|OsSET1|SDG718	Os03g0307800	LOC_Os03g19480	histone trimethylation	""	The expression of SDG711 and SDG718 is induced by LD and SD, respectively.
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	salinity	Evidence for nuclear interaction of a cytoskeleton protein (OsIFL) with metallothionein and its role in salinity stress tolerance.	Overexpression of OsIFL in transgenic tobacco plants conferred salinity stress tolerance by maintaining favourable K(+)/Na(+) ratio and thus showed protection from salinity stress induced ion toxicity
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	tolerance	Evidence for nuclear interaction of a cytoskeleton protein (OsIFL) with metallothionein and its role in salinity stress tolerance.	Overexpression of OsIFL in transgenic tobacco plants conferred salinity stress tolerance by maintaining favourable K(+)/Na(+) ratio and thus showed protection from salinity stress induced ion toxicity
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	abiotic stress	Evidence for nuclear interaction of a cytoskeleton protein (OsIFL) with metallothionein and its role in salinity stress tolerance.	Our investigations clearly establish that the heterologous expression of OsIFL in three diverse organisms (bacteria, yeast and tobacco) provides survival advantage towards diverse abiotic stresses
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	salinity stress	Evidence for nuclear interaction of a cytoskeleton protein (OsIFL) with metallothionein and its role in salinity stress tolerance.	Overexpression of OsIFL in transgenic tobacco plants conferred salinity stress tolerance by maintaining favourable K(+)/Na(+) ratio and thus showed protection from salinity stress induced ion toxicity
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	stress	Evidence for nuclear interaction of a cytoskeleton protein (OsIFL) with metallothionein and its role in salinity stress tolerance.	Overexpression of OsIFL in transgenic tobacco plants conferred salinity stress tolerance by maintaining favourable K(+)/Na(+) ratio and thus showed protection from salinity stress induced ion toxicity
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	biotic stress	Evidence for nuclear interaction of a cytoskeleton protein (OsIFL) with metallothionein and its role in salinity stress tolerance.	Our investigations clearly establish that the heterologous expression of OsIFL in three diverse organisms (bacteria, yeast and tobacco) provides survival advantage towards diverse abiotic stresses
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	stress tolerance	Evidence for nuclear interaction of a cytoskeleton protein (OsIFL) with metallothionein and its role in salinity stress tolerance.	Overexpression of OsIFL in transgenic tobacco plants conferred salinity stress tolerance by maintaining favourable K(+)/Na(+) ratio and thus showed protection from salinity stress induced ion toxicity
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	chloroplast	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Seeds of OsIF overexpression rice germinated normally in the presence of high salt, showed better growth, maintained chloroplast ultrastructure and favourable K+/Na+ ratio than the wild type (WT) and KD plants
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	temperature	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Under salinity and high temperature stress, OsIF overexpressing plants could maintain significantly high yield, while the WT and KD plants could not
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	salinity	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Overexpression of OsIF in transgenic rice enhanced tolerance to salinity and heat stress, while its knock-down (KD) rendered plants more sensitive thereby indicating the role of IFs in promoting survival under stress
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	salinity	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Analysis of photosynthesis and chlorophyll a fluorescence data suggested better performance of both photosystem I and II in the OsIF overexpression rice under salinity stress as compared to the WT and KD
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	salinity	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Under salinity and high temperature stress, OsIF overexpressing plants could maintain significantly high yield, while the WT and KD plants could not
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	salinity	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Further, metabolite profiling revealed a 2-4 fold higher accumulation of proline and trehalose in OsIF overexpressing rice than WT, under salinity stress
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	photosynthesis	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Analysis of photosynthesis and chlorophyll a fluorescence data suggested better performance of both photosystem I and II in the OsIF overexpression rice under salinity stress as compared to the WT and KD
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	tolerance	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Overexpression of OsIF in transgenic rice enhanced tolerance to salinity and heat stress, while its knock-down (KD) rendered plants more sensitive thereby indicating the role of IFs in promoting survival under stress
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	stress	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Overexpression of OsIF in transgenic rice enhanced tolerance to salinity and heat stress, while its knock-down (KD) rendered plants more sensitive thereby indicating the role of IFs in promoting survival under stress
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	stress	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Analysis of photosynthesis and chlorophyll a fluorescence data suggested better performance of both photosystem I and II in the OsIF overexpression rice under salinity stress as compared to the WT and KD
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	stress	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Further, metabolite profiling revealed a 2-4 fold higher accumulation of proline and trehalose in OsIF overexpressing rice than WT, under salinity stress
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	salinity stress	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Analysis of photosynthesis and chlorophyll a fluorescence data suggested better performance of both photosystem I and II in the OsIF overexpression rice under salinity stress as compared to the WT and KD
OsIFL|OsIF	Os01g0292700	LOC_Os01g18840	salinity stress	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Further, metabolite profiling revealed a 2-4 fold higher accumulation of proline and trehalose in OsIF overexpressing rice than WT, under salinity stress
OsIG1	Os01g0889400	LOC_Os01g66590	floral organ	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice
OsIG1	Os01g0889400	LOC_Os01g66590	double ovules	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice
OsIG1	Os01g0889400	LOC_Os01g66590	ovule	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice
OsIG1	Os01g0889400	LOC_Os01g66590	developmental abnormality	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice
OsIG1	Os01g0889400	LOC_Os01g66590	development	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice
OsIG1	Os01g0889400	LOC_Os01g66590	floral	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice
OsIG1	Os01g0889400	LOC_Os01g66590	megagametophyte	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice
OsIG1	Os01g0889400	LOC_Os01g66590	empty-glume identity	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Taken together, these results demonstrate that OsIG1 plays an essential role in the regulation of empty-glume identity, floral organ number control and female gametophyte development in rice.
OsIG1	Os01g0889400	LOC_Os01g66590	floral organ number control	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Taken together, these results demonstrate that OsIG1 plays an essential role in the regulation of empty-glume identity, floral organ number control and female gametophyte development in rice.
OsIG1	Os01g0889400	LOC_Os01g66590	female gametophyte development	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice	Taken together, these results demonstrate that OsIG1 plays an essential role in the regulation of empty-glume identity, floral organ number control and female gametophyte development in rice.
OsIG1	Os01g0889400	LOC_Os01g66590	development	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsIG1	Os01g0889400	LOC_Os01g66590	floral	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsIG1	Os01g0889400	LOC_Os01g66590	meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsIG1	Os01g0889400	LOC_Os01g66590	floral meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsIG1	Os01g0889400	LOC_Os01g66590	palea	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsIG1	Os01g0889400	LOC_Os01g66590	ovule	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsiICK6	Os10g0471700	LOC_Os10g33310	seed	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development	Over-expression of OsiICK6 resulted in multiple phenotypic effects on plant growth, morphology, pollen viability and seed setting
OsiICK6	Os10g0471700	LOC_Os10g33310	growth	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development	Over-expression of OsiICK6 resulted in multiple phenotypic effects on plant growth, morphology, pollen viability and seed setting
OsiICK6	Os10g0471700	LOC_Os10g33310	growth	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development	In OsiICK6-over-expressing plants, leaves rolled toward the abaxial side, suggesting that cell proliferation is critical in maintaining an even growth along the dorsal-ventral plane of leaf blades
OsiICK6	Os10g0471700	LOC_Os10g33310	growth	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development
OsiICK6	Os10g0471700	LOC_Os10g33310	pollen	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development	Over-expression of OsiICK6 resulted in multiple phenotypic effects on plant growth, morphology, pollen viability and seed setting
OsiICK6	Os10g0471700	LOC_Os10g33310	leaf	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development	In OsiICK6-over-expressing plants, leaves rolled toward the abaxial side, suggesting that cell proliferation is critical in maintaining an even growth along the dorsal-ventral plane of leaf blades
OsIM1	Os04g0668900	LOC_Os04g57320	chloroplast	A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress	Sequence analysis revealed that the amino-acid sequence of OsIM1 showed 66% and 62% identity with PTOX from tomato ( Capsicum annuum) and AtIM from Arabidopsis, both of which encoded chloroplast-orientated terminal oxidase
OsIM1	Os04g0668900	LOC_Os04g57320	ABA	A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress	The Northern blot revealed that OsIM1 was up-regulated by NaCl and ABA treatment
OsIM1	Os04g0668900	LOC_Os04g57320	salt stress	A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress	RT-PCR analysis indicated that OsIM1 and OsIM2 co-existed in the OsIM transcript pool, and the ratio of OsIM1/ OsIM2 was differentially regulated by salt stress in the salt-sensitive variety and the salt-tolerant varieties
OsIM1	Os04g0668900	LOC_Os04g57320	salt stress	A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress	A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress
OsIM1	Os04g0668900	LOC_Os04g57320	salt	A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress	A differentially expressed OsIM1 gene was isolated from rice salt-tolerant mutant M-20 by differential display
OsIM1	Os04g0668900	LOC_Os04g57320	salt	A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress	RT-PCR analysis indicated that OsIM1 and OsIM2 co-existed in the OsIM transcript pool, and the ratio of OsIM1/ OsIM2 was differentially regulated by salt stress in the salt-sensitive variety and the salt-tolerant varieties
OsIM1	Os04g0668900	LOC_Os04g57320	salt	A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress	A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress
OsIMA1	Os01g0647200	LOC_Os01g45914	tolerance	Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.	Overexpression of OsIMA1 or OsIMA2 in rice conferred tolerance to Fe deficiency and accumulation of Fe in leaves and seeds
OsIMA1	Os01g0647200	LOC_Os01g45914	transcription factor	Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.	Here, we report that the expression of two IMA/FEP genes in rice, OsIMA1 and OsIMA2, is strongly induced under Fe deficiency, positively regulated by the transcription factors IDEF1, OsbHLH058, and OsbHLH059, as well as OsIMA1 and OsIMA2 themselves, and negatively regulated by HRZ ubiquitin ligases
OsIMA1	Os01g0647200	LOC_Os01g45914	iron	Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.	Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.
OsIMA1	Os01g0647200	LOC_Os01g45914	Ubiquitin	Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.	Here, we report that the expression of two IMA/FEP genes in rice, OsIMA1 and OsIMA2, is strongly induced under Fe deficiency, positively regulated by the transcription factors IDEF1, OsbHLH058, and OsbHLH059, as well as OsIMA1 and OsIMA2 themselves, and negatively regulated by HRZ ubiquitin ligases
OsIMA1	Os01g0647200	LOC_Os01g45914	Fe	Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.	Here, we report that the expression of two IMA/FEP genes in rice, OsIMA1 and OsIMA2, is strongly induced under Fe deficiency, positively regulated by the transcription factors IDEF1, OsbHLH058, and OsbHLH059, as well as OsIMA1 and OsIMA2 themselves, and negatively regulated by HRZ ubiquitin ligases
OsIMA1	Os01g0647200	LOC_Os01g45914	Fe	Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.	Overexpression of OsIMA1 or OsIMA2 in rice conferred tolerance to Fe deficiency and accumulation of Fe in leaves and seeds
OsIMA1	Os01g0647200	LOC_Os01g45914	Fe	Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.	These results indicate that OsIMA1 and OsIMA2 play key roles in enhancing the major pathway of the Fe deficiency response in rice
OsIMA2	Os07g0142100	None	transcription factor	Iron deficiency-inducible peptide coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice	 Here, we report that the expressions of two IMA/FEP genes in rice, OsIMA1 and OsIMA2, are strongly induced under Fe-deficiency, positively regulated by the transcription factors IDEF1, OsbHLH058, OsbHLH059, as well as OsIMA1 and OsIMA2 themselves, and negatively regulated by HRZ ubiquitin ligases
OsIMA2	Os07g0142100	None	tolerance	Iron deficiency-inducible peptide coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice	 Overexpression of OsIMA1 or OsIMA2 in rice conferred tolerance to Fe-deficiency and accumulation of Fe in leaves and seeds
OsIMA2	Os07g0142100	None	iron	Iron deficiency-inducible peptide coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice	Iron deficiency-inducible peptide coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice
OsIMA2	Os07g0142100	None	Ubiquitin	Iron deficiency-inducible peptide coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice	 Here, we report that the expressions of two IMA/FEP genes in rice, OsIMA1 and OsIMA2, are strongly induced under Fe-deficiency, positively regulated by the transcription factors IDEF1, OsbHLH058, OsbHLH059, as well as OsIMA1 and OsIMA2 themselves, and negatively regulated by HRZ ubiquitin ligases
OsIMA2	Os07g0142100	None	Fe	Iron deficiency-inducible peptide coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice	 Overexpression of OsIMA1 or OsIMA2 in rice conferred tolerance to Fe-deficiency and accumulation of Fe in leaves and seeds
OsIMA2	Os07g0142100	None	Fe	Iron deficiency-inducible peptide coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice	 Knockdown of OsIMA1 or OsIMA2 caused minor effects, including repression of some Fe uptake- and translocation-related genes in OsIMA1 knockdown roots
OsIMA2	Os07g0142100	None	R protein	IRONMAN peptide interacts with OsHRZ1 and OsHRZ2 to maintain Fe homeostasis in rice.	 Here, we reveal that OsIMA1 and OsIMA2 interact with the potential Fe sensors, OsHRZ1 (HAEMERYTHRIN MOTIF-CONTAINING REALLY INTERESTING NEW GENE (RING) AND ZINC-FINGER PROTEIN 1) and OsHRZ2
OsIMA2	Os07g0142100	None	homeostasis	IRONMAN peptide interacts with OsHRZ1 and OsHRZ2 to maintain Fe homeostasis in rice.	 However, the molecular mechanism by which OsIMA1 and OsIMA2 regulate Fe homeostasis in rice is unclear
OsIMA2	Os07g0142100	None	Fe	IRONMAN peptide interacts with OsHRZ1 and OsHRZ2 to maintain Fe homeostasis in rice.	 However, the molecular mechanism by which OsIMA1 and OsIMA2 regulate Fe homeostasis in rice is unclear
OsIMA2	Os07g0142100	None	Fe	IRONMAN peptide interacts with OsHRZ1 and OsHRZ2 to maintain Fe homeostasis in rice.	 Here, we reveal that OsIMA1 and OsIMA2 interact with the potential Fe sensors, OsHRZ1 (HAEMERYTHRIN MOTIF-CONTAINING REALLY INTERESTING NEW GENE (RING) AND ZINC-FINGER PROTEIN 1) and OsHRZ2
OsIMA2	Os07g0142100	None	Fe homeostasis	IRONMAN peptide interacts with OsHRZ1 and OsHRZ2 to maintain Fe homeostasis in rice.	 However, the molecular mechanism by which OsIMA1 and OsIMA2 regulate Fe homeostasis in rice is unclear
OsIMalpha1b	Os01g0343200	LOC_Os01g24060	defense response	OsWRKY62 and OsWRKY76 Interact with Importin ��1s for Negative Regulation of Defensive Responses in Rice Nucleus	OsWRKY62 and OsWRKY76 Interact with Importin ��1s for Negative Regulation of Defensive Responses in Rice Nucleus
OsIMalpha1b	Os01g0343200	LOC_Os01g24060	disease resistance	OsWRKY62 and OsWRKY76 Interact with Importin ��1s for Negative Regulation of Defensive Responses in Rice Nucleus	OsWRKY62 and OsWRKY76 Interact with Importin ��1s for Negative Regulation of Defensive Responses in Rice Nucleus
OsIMP	Os03g0587000	LOC_Os03g39000	defense	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Meanwhile, we cloned the 5' flanking promoter sequence of the OsIMP gene and identified several important cis-acting elements, such as LTR (low-temperature responsiveness), TCA-element (salicylic acid responsiveness), ABRE-element (abscisic acid responsiveness), GARE-motif (gibberellin responsive), MBS (MYB Binding Site) and other cis-acting elements related to defense and stress responsiveness
OsIMP	Os03g0587000	LOC_Os03g39000	tolerance	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.
OsIMP	Os03g0587000	LOC_Os03g39000	tolerance	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	To further investigate the potential function of the OsIMP gene, we generated transgenic tobacco plants overexpressing the OsIMP gene and the cold tolerance test indicated that these transgenic tobacco plants exhibit improved cold tolerance
OsIMP	Os03g0587000	LOC_Os03g39000	cold tolerance	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.
OsIMP	Os03g0587000	LOC_Os03g39000	cold tolerance	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	To further investigate the potential function of the OsIMP gene, we generated transgenic tobacco plants overexpressing the OsIMP gene and the cold tolerance test indicated that these transgenic tobacco plants exhibit improved cold tolerance
OsIMP	Os03g0587000	LOC_Os03g39000	cold stress	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Phylogenetic analysis showed that IMPase is most closely related to that of the wild rice Oryza brachyantha, while transcript analysis revealed that the expression of the OsIMP is significantly induced by cold stress and exogenous abscisic acid (ABA) treatment
OsIMP	Os03g0587000	LOC_Os03g39000	salicylic acid	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Meanwhile, we cloned the 5' flanking promoter sequence of the OsIMP gene and identified several important cis-acting elements, such as LTR (low-temperature responsiveness), TCA-element (salicylic acid responsiveness), ABRE-element (abscisic acid responsiveness), GARE-motif (gibberellin responsive), MBS (MYB Binding Site) and other cis-acting elements related to defense and stress responsiveness
OsIMP	Os03g0587000	LOC_Os03g39000	stress	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Phylogenetic analysis showed that IMPase is most closely related to that of the wild rice Oryza brachyantha, while transcript analysis revealed that the expression of the OsIMP is significantly induced by cold stress and exogenous abscisic acid (ABA) treatment
OsIMP	Os03g0587000	LOC_Os03g39000	stress	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Meanwhile, we cloned the 5' flanking promoter sequence of the OsIMP gene and identified several important cis-acting elements, such as LTR (low-temperature responsiveness), TCA-element (salicylic acid responsiveness), ABRE-element (abscisic acid responsiveness), GARE-motif (gibberellin responsive), MBS (MYB Binding Site) and other cis-acting elements related to defense and stress responsiveness
OsIMP	Os03g0587000	LOC_Os03g39000	abscisic acid	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Phylogenetic analysis showed that IMPase is most closely related to that of the wild rice Oryza brachyantha, while transcript analysis revealed that the expression of the OsIMP is significantly induced by cold stress and exogenous abscisic acid (ABA) treatment
OsIMP	Os03g0587000	LOC_Os03g39000	abscisic acid	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Meanwhile, we cloned the 5' flanking promoter sequence of the OsIMP gene and identified several important cis-acting elements, such as LTR (low-temperature responsiveness), TCA-element (salicylic acid responsiveness), ABRE-element (abscisic acid responsiveness), GARE-motif (gibberellin responsive), MBS (MYB Binding Site) and other cis-acting elements related to defense and stress responsiveness
OsImpbeta1|OsImp1	Os05g0353400	LOC_Os05g28510	pollen	Rice Importin 1 gene affects pollen tube elongation	These results indicate that OsImp1 is specifically required for pollen tube elongation.
OsINH2	Os05g0301600	LOC_Os05g23610	growth	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.
OsINH2	Os05g0301600	LOC_Os05g23610	growth	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 Therefore, we focused on the role of PP1 regulatory subunits (PP1r), OsINH2 and OsINH3, homologs of AtINH2 and AtINH3 in Arabidopsis, in rice growth and stress adaptations
OsINH2	Os05g0301600	LOC_Os05g23610	growth	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH2	Os05g0301600	LOC_Os05g23610	fertility	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 The mutation in OsINH2 and OsINH3 reduced pollen viability, thereby affected rice fertility
OsINH2	Os05g0301600	LOC_Os05g23610	pollen	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 The mutation in OsINH2 and OsINH3 reduced pollen viability, thereby affected rice fertility
OsINH2	Os05g0301600	LOC_Os05g23610	stress	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 Therefore, we focused on the role of PP1 regulatory subunits (PP1r), OsINH2 and OsINH3, homologs of AtINH2 and AtINH3 in Arabidopsis, in rice growth and stress adaptations
OsINH2	Os05g0301600	LOC_Os05g23610	stress	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH2	Os05g0301600	LOC_Os05g23610	reproductive	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH2	Os05g0301600	LOC_Os05g23610	abscisic acid	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.
OsINH2	Os05g0301600	LOC_Os05g23610	reproductive growth	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH2	Os05g0301600	LOC_Os05g23610	phosphatase	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.
OsINH2	Os05g0301600	LOC_Os05g23610	ER stress	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH2	Os05g0301600	LOC_Os05g23610	protein phosphatase	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.
OsINH3	Os05g0270400	LOC_Os05g18774	growth	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.
OsINH3	Os05g0270400	LOC_Os05g18774	growth	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH3	Os05g0270400	LOC_Os05g18774	fertility	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 The mutation in OsINH2 and OsINH3 reduced pollen viability, thereby affected rice fertility
OsINH3	Os05g0270400	LOC_Os05g18774	pollen	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 The mutation in OsINH2 and OsINH3 reduced pollen viability, thereby affected rice fertility
OsINH3	Os05g0270400	LOC_Os05g18774	stress	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH3	Os05g0270400	LOC_Os05g18774	reproductive	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH3	Os05g0270400	LOC_Os05g18774	abscisic acid	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.
OsINH3	Os05g0270400	LOC_Os05g18774	reproductive growth	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH3	Os05g0270400	LOC_Os05g18774	phosphatase	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.
OsINH3	Os05g0270400	LOC_Os05g18774	ER stress	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	 In a nutshell, this research enlightened the involvement of OsINH2 and OsINH3 in the reproductive growth of rice and adaptive strategies under stress
OsINH3	Os05g0270400	LOC_Os05g18774	protein phosphatase	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.
OsINO1-1|OsINO1	Os03g0192700	LOC_Os03g09250	salt	An insight into the molecular basis of salt tolerance of L-myo-inositol 1-P synthase (PcINO1) from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice	A 37-amino acid stretch between Trp-174 and Ser-210 has been confirmed as the salt-tolerance determinant domain in PcINO1 both by loss or gain of salt tolerance by either deletion or by addition to salt-sensitive MIPS(s) of Oryza (OsINO1) and Brassica juncea (BjINO1)
OsINO1-1|OsINO1	Os03g0192700	LOC_Os03g09250	salt	An insight into the molecular basis of salt tolerance of L-myo-inositol 1-P synthase (PcINO1) from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice	4,4'-Dianilino-1,1'-binaphthyl-5,5-disulfonic acid binding experiments revealed a lower hydrophobic surface on PcINO1 than OsINO1, contributed by this 37-amino acid stretch explaining the differential behavior of OsINO1 and PcINO1 both with respect to their enzymatic functions and thermodynamic stability in high salt environment
OsINO1-1|OsINO1	Os03g0192700	LOC_Os03g09250	salt tolerance	An insight into the molecular basis of salt tolerance of L-myo-inositol 1-P synthase (PcINO1) from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice	A 37-amino acid stretch between Trp-174 and Ser-210 has been confirmed as the salt-tolerance determinant domain in PcINO1 both by loss or gain of salt tolerance by either deletion or by addition to salt-sensitive MIPS(s) of Oryza (OsINO1) and Brassica juncea (BjINO1)
OsINO1-1|OsINO1	Os03g0192700	LOC_Os03g09250	chloroplast	Identification and organization of chloroplastic and cytosolic L-myo-inositol 1-phosphate synthase coding gene(s) in Oryza sativa: comparison with the wild halophytic rice, Porteresia coarctata	4) has been identified by matrix-assisted laser desorption time-of-flight mass spectrometry analysis of the purified and immunologically cross-reactive approximately 60 kDa chloroplastic protein following two-dimensional polyacrylamide gel electrophoresis, which exhibited sequence identity with the cytosolic MIPS coded by OsINO1-1 gene
OsINO1-1|OsINO1	Os03g0192700	LOC_Os03g09250	chloroplast	Identification and organization of chloroplastic and cytosolic L-myo-inositol 1-phosphate synthase coding gene(s) in Oryza sativa: comparison with the wild halophytic rice, Porteresia coarctata	A possible chloroplastic transit peptide sequence was identified upstream of the OsINO1-1 gene upon analysis of rice genome
OsINO1-1|OsINO1	Os03g0192700	LOC_Os03g09250	chloroplast	Identification and organization of chloroplastic and cytosolic L-myo-inositol 1-phosphate synthase coding gene(s) in Oryza sativa: comparison with the wild halophytic rice, Porteresia coarctata	Bioinformatic analysis mapped the chloroplastic MIPS (OsINO1-1) gene on chromosome 3, and a second MIPS gene (OsINO1-2) on chromosome 10 which lacks conventional chloroplast transit peptide sequence as in OsINO1-1
OsINO1-2	Os10g0369900	LOC_Os10g22450	chloroplast	Identification and organization of chloroplastic and cytosolic L-myo-inositol 1-phosphate synthase coding gene(s) in Oryza sativa: comparison with the wild halophytic rice, Porteresia coarctata	Bioinformatic analysis mapped the chloroplastic MIPS (OsINO1-1) gene on chromosome 3, and a second MIPS gene (OsINO1-2) on chromosome 10 which lacks conventional chloroplast transit peptide sequence as in OsINO1-1
OsINO80	Os03g0352500	LOC_Os03g22900	growth	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.
OsINO80	Os03g0352500	LOC_Os03g22900	growth	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Thus, our study identified a rice chromatin-remodeling factor, OsINO80, and demonstrated that OsINO80 is involved in regulation of the GA biosynthesis pathway and plays critical functions for many aspects of rice plant growth and development
OsINO80	Os03g0352500	LOC_Os03g22900	development	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Thus, our study identified a rice chromatin-remodeling factor, OsINO80, and demonstrated that OsINO80 is involved in regulation of the GA biosynthesis pathway and plays critical functions for many aspects of rice plant growth and development
OsINO80	Os03g0352500	LOC_Os03g22900	gibberellin	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.
OsINO80	Os03g0352500	LOC_Os03g22900	plant growth	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.
OsINO80	Os03g0352500	LOC_Os03g22900	plant growth	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Thus, our study identified a rice chromatin-remodeling factor, OsINO80, and demonstrated that OsINO80 is involved in regulation of the GA biosynthesis pathway and plays critical functions for many aspects of rice plant growth and development
OsINO80	Os03g0352500	LOC_Os03g22900	ga	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Consistently, transcriptome analyses reveal that OsINO80 knockdown results in downregulation by more than two-fold of over 1,000 genes, including the GA biosynthesis genes CPS1 and GA3ox2, and the dwarf phenotype of OsINO80-knockdown mutants can be rescued by the application of exogenous GA3
OsINO80	Os03g0352500	LOC_Os03g22900	ga	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Thus, our study identified a rice chromatin-remodeling factor, OsINO80, and demonstrated that OsINO80 is involved in regulation of the GA biosynthesis pathway and plays critical functions for many aspects of rice plant growth and development
OsINO80	Os03g0352500	LOC_Os03g22900	dwarf	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Consistently, transcriptome analyses reveal that OsINO80 knockdown results in downregulation by more than two-fold of over 1,000 genes, including the GA biosynthesis genes CPS1 and GA3ox2, and the dwarf phenotype of OsINO80-knockdown mutants can be rescued by the application of exogenous GA3
OsINO80	Os03g0352500	LOC_Os03g22900	Gibberellin	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.
OsINO80	Os03g0352500	LOC_Os03g22900	GA	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Consistently, transcriptome analyses reveal that OsINO80 knockdown results in downregulation by more than two-fold of over 1,000 genes, including the GA biosynthesis genes CPS1 and GA3ox2, and the dwarf phenotype of OsINO80-knockdown mutants can be rescued by the application of exogenous GA3
OsINO80	Os03g0352500	LOC_Os03g22900	GA	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Thus, our study identified a rice chromatin-remodeling factor, OsINO80, and demonstrated that OsINO80 is involved in regulation of the GA biosynthesis pathway and plays critical functions for many aspects of rice plant growth and development
OsINO80	Os03g0352500	LOC_Os03g22900	GA biosynthesis	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Consistently, transcriptome analyses reveal that OsINO80 knockdown results in downregulation by more than two-fold of over 1,000 genes, including the GA biosynthesis genes CPS1 and GA3ox2, and the dwarf phenotype of OsINO80-knockdown mutants can be rescued by the application of exogenous GA3
OsINO80	Os03g0352500	LOC_Os03g22900	GA biosynthesis	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Thus, our study identified a rice chromatin-remodeling factor, OsINO80, and demonstrated that OsINO80 is involved in regulation of the GA biosynthesis pathway and plays critical functions for many aspects of rice plant growth and development
OsINO80	Os03g0352500	LOC_Os03g22900	gibberellin biosynthesis	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.
OsINP1	Os02g0661300	LOC_Os02g44250	pollen	Rice pollen aperture formation is regulated by the interplay between OsINP1 and OsDAF1.	Rice pollen aperture formation is regulated by the interplay between OsINP1 and OsDAF1.
OSINV1	Os09g0255000	LOC_Os09g08072	cell wall	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Expression analysis of two cell wall (OSINV1, 4) and one vacuolar (OSINV2) acid invertase genes showed that OSINV4 is anther-specific and downregulated by cold treatment
OSINV1	Os09g0255000	LOC_Os09g08072	anther	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Expression analysis of two cell wall (OSINV1, 4) and one vacuolar (OSINV2) acid invertase genes showed that OSINV4 is anther-specific and downregulated by cold treatment
OsINV2	Os04g0535600	LOC_Os04g45290	leaf	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	This was confirmed by OsINV2 promoter::GUS studies, where its spatial and temporal expression in the panicle elongation stages showed that although OsINV2 expression was observed from the stage with young panicles ~1 cm in length to the flag leaf stage, significant differences with respect to panicle and spikelet phenotypes between the wild-type and the mutant were not present
OsINV2	Os04g0535600	LOC_Os04g45290	tillering	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	However, complement lines displaying an overexpression phenotype of OsINV2 possessed a higher stem non-structural carbohydrate content under both monoculm and normal tillering conditions
OsINV2	Os04g0535600	LOC_Os04g45290	stem	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	However, complement lines displaying an overexpression phenotype of OsINV2 possessed a higher stem non-structural carbohydrate content under both monoculm and normal tillering conditions
OsINV2	Os04g0535600	LOC_Os04g45290	panicle	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	This was confirmed by OsINV2 promoter::GUS studies, where its spatial and temporal expression in the panicle elongation stages showed that although OsINV2 expression was observed from the stage with young panicles ~1 cm in length to the flag leaf stage, significant differences with respect to panicle and spikelet phenotypes between the wild-type and the mutant were not present
OsINV2	Os04g0535600	LOC_Os04g45290	spikelet	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	This was confirmed by OsINV2 promoter::GUS studies, where its spatial and temporal expression in the panicle elongation stages showed that although OsINV2 expression was observed from the stage with young panicles ~1 cm in length to the flag leaf stage, significant differences with respect to panicle and spikelet phenotypes between the wild-type and the mutant were not present
OsINV2	Os04g0535600	LOC_Os04g45290	spikelet	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	A trade-off between the spikelet number and grain weight in the complement lines grown under monoculm conditions was also observed, pointing towards the necessity of OsINV2 regulation for grain yield-related traits
OsINV2	Os04g0535600	LOC_Os04g45290	grain	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	A trade-off between the spikelet number and grain weight in the complement lines grown under monoculm conditions was also observed, pointing towards the necessity of OsINV2 regulation for grain yield-related traits
OsINV2	Os04g0535600	LOC_Os04g45290	grain yield	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	A trade-off between the spikelet number and grain weight in the complement lines grown under monoculm conditions was also observed, pointing towards the necessity of OsINV2 regulation for grain yield-related traits
OsINV2	Os04g0535600	LOC_Os04g45290	spikelet number	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	A trade-off between the spikelet number and grain weight in the complement lines grown under monoculm conditions was also observed, pointing towards the necessity of OsINV2 regulation for grain yield-related traits
OsINV2	Os04g0535600	LOC_Os04g45290	grain weight	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	A trade-off between the spikelet number and grain weight in the complement lines grown under monoculm conditions was also observed, pointing towards the necessity of OsINV2 regulation for grain yield-related traits
OsINV2	Os04g0535600	LOC_Os04g45290	grain	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	In summary, we identified OsINV3 as a positive regulator of grain size in rice, and while OsINV2 has no function on grain size by itself
OsINV2	Os04g0535600	LOC_Os04g45290	grain	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	In the absence of OsINV3, it is possible to detect a role of OsINV2 in the regulation of grain size
OsINV2	Os04g0535600	LOC_Os04g45290	grain	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Both OsINV3 and OsINV2 are involved in sucrose metabolism, and thus regulate grain size
OsINV2	Os04g0535600	LOC_Os04g45290	starch	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Altered sugar content with increased sucrose and decreased hexose levels, as well as changes vacuolar invertase activities and starch constitution in INV3KO, INV2KO, INV3KOINV2KO mutants indicate that OsINV2 and OsINV3 affect sucrose metabolism in sink organs
OsINV2	Os04g0535600	LOC_Os04g45290	grain size	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	In summary, we identified OsINV3 as a positive regulator of grain size in rice, and while OsINV2 has no function on grain size by itself
OsINV2	Os04g0535600	LOC_Os04g45290	grain size	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	In the absence of OsINV3, it is possible to detect a role of OsINV2 in the regulation of grain size
OsINV2	Os04g0535600	LOC_Os04g45290	grain size	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Both OsINV3 and OsINV2 are involved in sucrose metabolism, and thus regulate grain size
OsINV2	Os04g0535600	LOC_Os04g45290	sugar	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Altered sugar content with increased sucrose and decreased hexose levels, as well as changes vacuolar invertase activities and starch constitution in INV3KO, INV2KO, INV3KOINV2KO mutants indicate that OsINV2 and OsINV3 affect sucrose metabolism in sink organs
OsINV2	Os04g0535600	LOC_Os04g45290	sucrose	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Altered sugar content with increased sucrose and decreased hexose levels, as well as changes vacuolar invertase activities and starch constitution in INV3KO, INV2KO, INV3KOINV2KO mutants indicate that OsINV2 and OsINV3 affect sucrose metabolism in sink organs
OsINV2	Os04g0535600	LOC_Os04g45290	sucrose	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Both OsINV3 and OsINV2 are involved in sucrose metabolism, and thus regulate grain size
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	panicle	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	Further, strong promoter::GUS expression was observed in the palea, lemma and the rachis branches in the young elongating panicles, which supported the role of OsINV3 in cell expansion and thus, in spikelet size and panicle length determination
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	spikelet	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	Further, strong promoter::GUS expression was observed in the palea, lemma and the rachis branches in the young elongating panicles, which supported the role of OsINV3 in cell expansion and thus, in spikelet size and panicle length determination
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	spikelet	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	OsINV3 was found to regulate spikelet size by playing a key role in cell expansion, driving the movement of assimilates for grain filling by modulating the hexose-to-sucrose ratio, contributing in grain weight determination and thus, the grain yield
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	In addition, strong promoter::GUS expression was observed in the dorsal end of ovary during the pre-storage phase until 6 days after flowering, highlighting a function for OsINV3 in monitoring the initial grain filling stage
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	OsINV3 was found to regulate spikelet size by playing a key role in cell expansion, driving the movement of assimilates for grain filling by modulating the hexose-to-sucrose ratio, contributing in grain weight determination and thus, the grain yield
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain yield	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	OsINV3 was found to regulate spikelet size by playing a key role in cell expansion, driving the movement of assimilates for grain filling by modulating the hexose-to-sucrose ratio, contributing in grain weight determination and thus, the grain yield
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	yield	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	OsINV3 was found to regulate spikelet size by playing a key role in cell expansion, driving the movement of assimilates for grain filling by modulating the hexose-to-sucrose ratio, contributing in grain weight determination and thus, the grain yield
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	palea	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	OsINV3 mutants showed shorter panicles with lighter and smaller grains, owing to a smaller cell size on the outer and inner surfaces of the palea and lemma as observed by scanning electron microscopy
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	lemma	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	OsINV3 mutants showed shorter panicles with lighter and smaller grains, owing to a smaller cell size on the outer and inner surfaces of the palea and lemma as observed by scanning electron microscopy
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	lemma	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	Further, strong promoter::GUS expression was observed in the palea, lemma and the rachis branches in the young elongating panicles, which supported the role of OsINV3 in cell expansion and thus, in spikelet size and panicle length determination
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain filling	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	In addition, strong promoter::GUS expression was observed in the dorsal end of ovary during the pre-storage phase until 6<U+00A0>days after flowering, highlighting a function for OsINV3 in monitoring the initial grain filling stage
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain filling	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	OsINV3 was found to regulate spikelet size by playing a key role in cell expansion, driving the movement of assimilates for grain filling by modulating the hexose-to-sucrose ratio, contributing in grain weight determination and thus, the grain yield
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain weight	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	OsINV3 was found to regulate spikelet size by playing a key role in cell expansion, driving the movement of assimilates for grain filling by modulating the hexose-to-sucrose ratio, contributing in grain weight determination and thus, the grain yield
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Collectively, OsVIN2 is involved in sugar metabolism, and thus regulates grain size; our findings provide insights into grain development and also suggest a potential strategy to improve grain quality and yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	development	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Collectively, OsVIN2 is involved in sugar metabolism, and thus regulates grain size; our findings provide insights into grain development and also suggest a potential strategy to improve grain quality and yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	starch	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Furthermore, an altered sugar content with increased sucrose and decreased hexose levels, as well as changes in invertase and sucrose synthase activities, sugar transport gene expression, and starch constitution in sgs1 implies that OsVIN2 affects sucrose metabolism, including sugar composition, transport, and conversion from the source to the sink organs
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	map-based cloning	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Map-based cloning and complementation tests revealed that a DaiZ7 transposon insertion in a vacuolar invertase gene OsVIN2 is responsible for the mutant phenotype
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	yield	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Collectively, OsVIN2 is involved in sugar metabolism, and thus regulates grain size; our findings provide insights into grain development and also suggest a potential strategy to improve grain quality and yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain size	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain size	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Collectively, OsVIN2 is involved in sugar metabolism, and thus regulates grain size; our findings provide insights into grain development and also suggest a potential strategy to improve grain quality and yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	sugar	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	sugar	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Furthermore, an altered sugar content with increased sucrose and decreased hexose levels, as well as changes in invertase and sucrose synthase activities, sugar transport gene expression, and starch constitution in sgs1 implies that OsVIN2 affects sucrose metabolism, including sugar composition, transport, and conversion from the source to the sink organs
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	sugar	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Collectively, OsVIN2 is involved in sugar metabolism, and thus regulates grain size; our findings provide insights into grain development and also suggest a potential strategy to improve grain quality and yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	quality	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Collectively, OsVIN2 is involved in sugar metabolism, and thus regulates grain size; our findings provide insights into grain development and also suggest a potential strategy to improve grain quality and yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	sucrose	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Subcellular distribution and biochemical analysis indicated that OsVIN2 is located in the vacuolar lumen, and that its sucrose hydrolysis activity is maintained under acidic conditions
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	sucrose	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Furthermore, an altered sugar content with increased sucrose and decreased hexose levels, as well as changes in invertase and sucrose synthase activities, sugar transport gene expression, and starch constitution in sgs1 implies that OsVIN2 affects sucrose metabolism, including sugar composition, transport, and conversion from the source to the sink organs
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain quality	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Collectively, OsVIN2 is involved in sugar metabolism, and thus regulates grain size; our findings provide insights into grain development and also suggest a potential strategy to improve grain quality and yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	The Role of Rice Vacuolar Invertase2 in Seed Size Control.	In a phenotypic analysis of the T-DNA insertion mutants, only the OsVIN2 mutant osvin2-1 exhibited reduced seed size and grain weight
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	seed	The Role of Rice Vacuolar Invertase2 in Seed Size Control.	In a phenotypic analysis of the T-DNA insertion mutants, only the OsVIN2 mutant osvin2-1 exhibited reduced seed size and grain weight
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	seed	The Role of Rice Vacuolar Invertase2 in Seed Size Control.	A genetically complemented line with a native genomic clone of OsVIN2 rescued reduced VIN activity and seed size
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	seed	The Role of Rice Vacuolar Invertase2 in Seed Size Control.	These results clearly demonstrate an important role of OsVIN2 as sink strength modulator that is critical for the maintenance of sucrose flux into developing seed grains
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	seed size	The Role of Rice Vacuolar Invertase2 in Seed Size Control.	In a phenotypic analysis of the T-DNA insertion mutants, only the OsVIN2 mutant osvin2-1 exhibited reduced seed size and grain weight
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	seed size	The Role of Rice Vacuolar Invertase2 in Seed Size Control.	A genetically complemented line with a native genomic clone of OsVIN2 rescued reduced VIN activity and seed size
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain weight	The Role of Rice Vacuolar Invertase2 in Seed Size Control.	In a phenotypic analysis of the T-DNA insertion mutants, only the OsVIN2 mutant osvin2-1 exhibited reduced seed size and grain weight
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	sucrose	The Role of Rice Vacuolar Invertase2 in Seed Size Control.	These results clearly demonstrate an important role of OsVIN2 as sink strength modulator that is critical for the maintenance of sucrose flux into developing seed grains
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Loss-of-function of OsINV3 resulted in grains of smaller size when compared to the wild type, while overexpression showed increased grain size
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Genetic data showed that OsINV2, that has no effect on grain size by itself, reduces grain length and width in the absence of OsINV3
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	In summary, we identified OsINV3 as a positive regulator of grain size in rice, and while OsINV2 has no function on grain size by itself
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Both OsINV3 and OsINV2 are involved in sucrose metabolism, and thus regulate grain size
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Our findings increase our understanding of the role of OsINV3 and its homolog, OsINV2, in grain size development and also suggest a potential strategy to improve grain yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	development	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Our findings increase our understanding of the role of OsINV3 and its homolog, OsINV2, in grain size development and also suggest a potential strategy to improve grain yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain length	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Genetic data showed that OsINV2, that has no effect on grain size by itself, reduces grain length and width in the absence of OsINV3
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	starch	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Altered sugar content with increased sucrose and decreased hexose levels, as well as changes vacuolar invertase activities and starch constitution in INV3KO, INV2KO, INV3KOINV2KO mutants indicate that OsINV2 and OsINV3 affect sucrose metabolism in sink organs
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	map-based cloning	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Map-based cloning and genetic complementation showed that OsINV3 is responsible for the observed phenotype
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain yield	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Our findings increase our understanding of the role of OsINV3 and its homolog, OsINV2, in grain size development and also suggest a potential strategy to improve grain yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	yield	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Our findings increase our understanding of the role of OsINV3 and its homolog, OsINV2, in grain size development and also suggest a potential strategy to improve grain yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain size	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain size	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Loss-of-function of OsINV3 resulted in grains of smaller size when compared to the wild type, while overexpression showed increased grain size
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain size	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Genetic data showed that OsINV2, that has no effect on grain size by itself, reduces grain length and width in the absence of OsINV3
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain size	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	In summary, we identified OsINV3 as a positive regulator of grain size in rice, and while OsINV2 has no function on grain size by itself
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain size	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Both OsINV3 and OsINV2 are involved in sucrose metabolism, and thus regulate grain size
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	grain size	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Our findings increase our understanding of the role of OsINV3 and its homolog, OsINV2, in grain size development and also suggest a potential strategy to improve grain yield in rice
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	sugar	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Altered sugar content with increased sucrose and decreased hexose levels, as well as changes vacuolar invertase activities and starch constitution in INV3KO, INV2KO, INV3KOINV2KO mutants indicate that OsINV2 and OsINV3 affect sucrose metabolism in sink organs
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	sucrose	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Altered sugar content with increased sucrose and decreased hexose levels, as well as changes vacuolar invertase activities and starch constitution in INV3KO, INV2KO, INV3KOINV2KO mutants indicate that OsINV2 and OsINV3 affect sucrose metabolism in sink organs
OSINV3|OsVIN2	Os02g0106100	LOC_Os02g01590	sucrose	OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice.	Both OsINV3 and OsINV2 are involved in sucrose metabolism, and thus regulate grain size
OSINV4	Os04g0413200	LOC_Os04g33720	starch	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	The down-regulation of OSINV4 expression in the tapetum at YM may cause a disruption in hexose production and starch formation in the pollen grains
OSINV4	Os04g0413200	LOC_Os04g33720	starch	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	In a cold-tolerant cultivar, OSINV4 expression was not reduced by cold; sucrose did not accumulate in the anthers and starch formation in the pollen grains was not affected
OSINV4	Os04g0413200	LOC_Os04g33720	chilling	Effects of chilling on male gametophyte development in rice	Perturbed carbohydrate metabolism, which is particularly triggered by repressed genes OsINV4 and OsMST8 during chilling, causes unusual starch storage in the endothecium and this also contributes to other symptoms such as vacuolation and poor microspore wall formation
OSINV4	Os04g0413200	LOC_Os04g33720	starch	Effects of chilling on male gametophyte development in rice	Perturbed carbohydrate metabolism, which is particularly triggered by repressed genes OsINV4 and OsMST8 during chilling, causes unusual starch storage in the endothecium and this also contributes to other symptoms such as vacuolation and poor microspore wall formation
OSINV4	Os04g0413200	LOC_Os04g33720	microspore	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	OSINV4 is transiently expressed in the tapetum cell layer at the YM stage, and later from the early binucleate stage in the maturing microspores
OSINV4	Os04g0413200	LOC_Os04g33720	anther	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Expression analysis of two cell wall (OSINV1, 4) and one vacuolar (OSINV2) acid invertase genes showed that OSINV4 is anther-specific and downregulated by cold treatment
OSINV4	Os04g0413200	LOC_Os04g33720	anther	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	In a cold-tolerant cultivar, OSINV4 expression was not reduced by cold; sucrose did not accumulate in the anthers and starch formation in the pollen grains was not affected
OSINV4	Os04g0413200	LOC_Os04g33720	anther	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility
OSINV4	Os04g0413200	LOC_Os04g33720	sterility	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility
OSINV4	Os04g0413200	LOC_Os04g33720	microspore	Effects of chilling on male gametophyte development in rice	Perturbed carbohydrate metabolism, which is particularly triggered by repressed genes OsINV4 and OsMST8 during chilling, causes unusual starch storage in the endothecium and this also contributes to other symptoms such as vacuolation and poor microspore wall formation
OSINV4	Os04g0413200	LOC_Os04g33720	pollen	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	The down-regulation of OSINV4 expression in the tapetum at YM may cause a disruption in hexose production and starch formation in the pollen grains
OSINV4	Os04g0413200	LOC_Os04g33720	pollen	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	In a cold-tolerant cultivar, OSINV4 expression was not reduced by cold; sucrose did not accumulate in the anthers and starch formation in the pollen grains was not affected
OSINV4	Os04g0413200	LOC_Os04g33720	pollen	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility
OSINV4	Os04g0413200	LOC_Os04g33720	tapetum	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	OSINV4 is transiently expressed in the tapetum cell layer at the YM stage, and later from the early binucleate stage in the maturing microspores
OSINV4	Os04g0413200	LOC_Os04g33720	tapetum	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	The down-regulation of OSINV4 expression in the tapetum at YM may cause a disruption in hexose production and starch formation in the pollen grains
OSINV4	Os04g0413200	LOC_Os04g33720	grain	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	The down-regulation of OSINV4 expression in the tapetum at YM may cause a disruption in hexose production and starch formation in the pollen grains
OSINV4	Os04g0413200	LOC_Os04g33720	grain	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	In a cold-tolerant cultivar, OSINV4 expression was not reduced by cold; sucrose did not accumulate in the anthers and starch formation in the pollen grains was not affected
OSINV4	Os04g0413200	LOC_Os04g33720	cell wall	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Expression analysis of two cell wall (OSINV1, 4) and one vacuolar (OSINV2) acid invertase genes showed that OSINV4 is anther-specific and downregulated by cold treatment
OSINV4	Os04g0413200	LOC_Os04g33720	cell wall	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility
OSIPA	Os10g0548600	LOC_Os10g40090	sterile	Pollen-specific expression of Oryza sativa indica pollen allergen gene (OSIPA) promoter in rice and Arabidopsis transgenic systems	As such, the OSIPA promoter seems promising for generation of stable male-sterile lines required for the production of hybrids in rice and other crop plants
OSIPA	Os10g0548600	LOC_Os10g40090	pollen	Pollen-specific expression of Oryza sativa indica pollen allergen gene (OSIPA) promoter in rice and Arabidopsis transgenic systems	Earlier, a pollen-specific Oryza sativa indica pollen allergen gene (OSIPA), coding for expansins/pollen allergens, was isolated from rice, and its promoter--upon expression in tobacco and Arabidopsis--was found active during the late stages of pollen development
OSIPA	Os10g0548600	LOC_Os10g40090	pollen	Pollen-specific expression of Oryza sativa indica pollen allergen gene (OSIPA) promoter in rice and Arabidopsis transgenic systems	Pollen-specific expression of Oryza sativa indica pollen allergen gene (OSIPA) promoter in rice and Arabidopsis transgenic systems
OSIPA	Os10g0548600	LOC_Os10g40090	panicle	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Differential screening of a stage-specific cDNA library of Indica rice has been used to identify two genes expressed in pre-pollination stage panicles, namely OSIPA and OSIPK coding for proteins similar to expansins/pollen allergens and calcium-dependent protein kinases (CDPK), respectively
OSIPA	Os10g0548600	LOC_Os10g40090	pollen	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Differential screening of a stage-specific cDNA library of Indica rice has been used to identify two genes expressed in pre-pollination stage panicles, namely OSIPA and OSIPK coding for proteins similar to expansins/pollen allergens and calcium-dependent protein kinases (CDPK), respectively
OSIPA	Os10g0548600	LOC_Os10g40090	pollen	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Northern analysis and in situ hybridizations indicate that OSIPA expresses exclusively in pollen while OSIPK expresses in pollen as well as anther wall
OSIPA	Os10g0548600	LOC_Os10g40090	pollen	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Promoter of OSIPA is active during the late stages of pollen development and remains active till the anthesis, whereas, OSIPK promoter is active to a low level in developing anther till the pollen matures
OSIPA	Os10g0548600	LOC_Os10g40090	anther	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Northern analysis and in situ hybridizations indicate that OSIPA expresses exclusively in pollen while OSIPK expresses in pollen as well as anther wall
OSIPA	Os10g0548600	LOC_Os10g40090	anther	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Promoter of OSIPA is active during the late stages of pollen development and remains active till the anthesis, whereas, OSIPK promoter is active to a low level in developing anther till the pollen matures
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	panicle	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Differential screening of a stage-specific cDNA library of Indica rice has been used to identify two genes expressed in pre-pollination stage panicles, namely OSIPA and OSIPK coding for proteins similar to expansins/pollen allergens and calcium-dependent protein kinases (CDPK), respectively
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Differential screening of a stage-specific cDNA library of Indica rice has been used to identify two genes expressed in pre-pollination stage panicles, namely OSIPA and OSIPK coding for proteins similar to expansins/pollen allergens and calcium-dependent protein kinases (CDPK), respectively
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Northern analysis and in situ hybridizations indicate that OSIPA expresses exclusively in pollen while OSIPK expresses in pollen as well as anther wall
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Promoter of OSIPA is active during the late stages of pollen development and remains active till the anthesis, whereas, OSIPK promoter is active to a low level in developing anther till the pollen matures
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	anther	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Northern analysis and in situ hybridizations indicate that OSIPA expresses exclusively in pollen while OSIPK expresses in pollen as well as anther wall
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	anther	Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems	Promoter of OSIPA is active during the late stages of pollen development and remains active till the anthesis, whereas, OSIPK promoter is active to a low level in developing anther till the pollen matures
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	transcription factor	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 Furthermore, it has been demonstrated that OsCPK29 interacts in vitro as well as in vivo with the MADS68 transcription factor which is a known regulator of pollen development
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	development	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	OsCPK29 interacts with MADS68 to regulate pollen development in rice.
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	development	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 Furthermore, it has been demonstrated that OsCPK29 interacts in vitro as well as in vivo with the MADS68 transcription factor which is a known regulator of pollen development
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	development	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 Therefore, phenotypic observations and molecular studies suggest that OsCPK29 is an important regulator of pollen development in rice
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	OsCPK29 interacts with MADS68 to regulate pollen development in rice.
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 Here, we report the functional characterization of a novel OsCPK29 from rice, which is mainly expressed during pollen maturation stages of the anther
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 OsCPK29 knockdown rice plants exhibit reduced fertility, set fewer seeds, and produce collapsed non-viable pollen grains that do not germinate
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 Furthermore, it has been demonstrated that OsCPK29 interacts in vitro as well as in vivo with the MADS68 transcription factor which is a known regulator of pollen development
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 Therefore, phenotypic observations and molecular studies suggest that OsCPK29 is an important regulator of pollen development in rice
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	anther	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 Here, we report the functional characterization of a novel OsCPK29 from rice, which is mainly expressed during pollen maturation stages of the anther
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	nucleus	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 OsCPK29 exclusively localizes in the nucleus, and its N-terminal variable domain is responsible for retaining it in the nucleus
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen development	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	OsCPK29 interacts with MADS68 to regulate pollen development in rice.
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen development	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 Furthermore, it has been demonstrated that OsCPK29 interacts in vitro as well as in vivo with the MADS68 transcription factor which is a known regulator of pollen development
OSIPK|OsCPK29	Os12g0230200	LOC_Os12g12860	pollen development	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	 Therefore, phenotypic observations and molecular studies suggest that OsCPK29 is an important regulator of pollen development in rice
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	mitochondria	IP6K gene identification in plant genomes by tag searching	CONCLUSIONS: The analysis we conducted in plant mitochondria provided the negative, though we argue relevant, result that IP6K does not actually occur in vegetable mtDNA
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	anther	Expression pattern of inositol phosphate-related enzymes in rice (Oryza sativa L.): Implications for the phytic acid biosynthetic pathway	On the other hand, the up-regulation of a MIPS, an IMP, an IPK2, and an ITP5/6K in anthers suggested that a PLC-mediated pathway was active in addition to a lipid-independent pathway in the anthers
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	root	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Furthermore, expressing additional OsIPK2 or its N-terminal amino acid sequence enhanced the accumulation of OsIAA11 protein in transgenic plants, which in turn caused defects in lateral root formation and auxin response
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	auxin	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Furthermore, expressing additional OsIPK2 or its N-terminal amino acid sequence enhanced the accumulation of OsIAA11 protein in transgenic plants, which in turn caused defects in lateral root formation and auxin response
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	lateral root	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Furthermore, expressing additional OsIPK2 or its N-terminal amino acid sequence enhanced the accumulation of OsIAA11 protein in transgenic plants, which in turn caused defects in lateral root formation and auxin response
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	auxin response	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate Lateral Root Formation.	Furthermore, expressing additional OsIPK2 or its N-terminal amino acid sequence enhanced the accumulation of OsIAA11 protein in transgenic plants, which in turn caused defects in lateral root formation and auxin response
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	leaf	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Conclusions: The ES2 gene, encoding an inositol polyphosphate kinase localized in the nucleus and plasma membrane of cells, is essential for leaf senescence in rice
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	leaf	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Further study of ES2 will facilitate the dissection of the genetic mechanisms underlying early leaf senescence and plant growth
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	leaf senescence	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Conclusions: The ES2 gene, encoding an inositol polyphosphate kinase localized in the nucleus and plasma membrane of cells, is essential for leaf senescence in rice
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	leaf senescence	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Further study of ES2 will facilitate the dissection of the genetic mechanisms underlying early leaf senescence and plant growth
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	early leaf senescence	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Further study of ES2 will facilitate the dissection of the genetic mechanisms underlying early leaf senescence and plant growth
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	senescence	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Leaves of es2 showed early senescence at the seedling stage and became severe at the tillering stage
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	senescence	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Conclusions: The ES2 gene, encoding an inositol polyphosphate kinase localized in the nucleus and plasma membrane of cells, is essential for leaf senescence in rice
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	senescence	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Further study of ES2 will facilitate the dissection of the genetic mechanisms underlying early leaf senescence and plant growth
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	tillering	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Leaves of es2 showed early senescence at the seedling stage and became severe at the tillering stage
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	growth	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Further study of ES2 will facilitate the dissection of the genetic mechanisms underlying early leaf senescence and plant growth
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	seedling	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Leaves of es2 showed early senescence at the seedling stage and became severe at the tillering stage
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	photosynthesis	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Moreover, genes which related to senescence, ROS and chlorophyll degradation were up-regulated, while those associated with photosynthesis and chlorophyll synthesis were down-regulated in es2 mutant compared to WYG7
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	nucleus	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	DNA sequencing of ES2 in the mutant revealed a missense mutation, ES2 was localized to nucleus and plasma membrane of cells, and expressed in various tissues of rice
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	nucleus	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Conclusions: The ES2 gene, encoding an inositol polyphosphate kinase localized in the nucleus and plasma membrane of cells, is essential for leaf senescence in rice
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	plant growth	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Further study of ES2 will facilitate the dissection of the genetic mechanisms underlying early leaf senescence and plant growth
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	Kinase	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	The ES2 gene, which encodes an inositol polyphosphate kinase (OsIPK2), was fine mapped to a 116
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	Kinase	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Conclusions: The ES2 gene, encoding an inositol polyphosphate kinase localized in the nucleus and plasma membrane of cells, is essential for leaf senescence in rice
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	plasma membrane	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	DNA sequencing of ES2 in the mutant revealed a missense mutation, ES2 was localized to nucleus and plasma membrane of cells, and expressed in various tissues of rice
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	plasma membrane	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Conclusions: The ES2 gene, encoding an inositol polyphosphate kinase localized in the nucleus and plasma membrane of cells, is essential for leaf senescence in rice
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	chlorophyll content	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	The contents of reactive oxygen species (ROS) significantly increased, while chlorophyll content, photosynthetic rate, catalase (CAT) activity significantly decreased in the es2 mutant
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	chlorophyll content	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Complementation test and overexpression experiment confirmed that ES2 completely restored the normal phenotype, with chlorophyll contents and photosynthetic rate increased comparable with the wild type
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	reactive oxygen species	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	The contents of reactive oxygen species (ROS) significantly increased, while chlorophyll content, photosynthetic rate, catalase (CAT) activity significantly decreased in the es2 mutant
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	kinase	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	The ES2 gene, which encodes an inositol polyphosphate kinase (OsIPK2), was fine mapped to a 116
OsIPK2|IPK2|IP6K|ES2	Os02g0523800	LOC_Os02g32370	kinase	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence	Conclusions: The ES2 gene, encoding an inositol polyphosphate kinase localized in the nucleus and plasma membrane of cells, is essential for leaf senescence in rice
OsIPMDH	Os03g0655700	LOC_Os03g45320	dehydrogenase	Isolation of a gene encoding 3-isopropylmalate dehydrogenase from rice	These results indicate that OsIPMDH encodes for a protein of 3-isopropylmalate dehydrogenase in rice.
OsIPMS1	Os11g0142500	LOC_Os11g04670	seed	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.
OsIPMS1	Os11g0142500	LOC_Os11g04670	seed	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	In this study, rice OsIPMS1 and OsIPMS2 was cloned, and the roles of OsIPMS1 in seed vigor were mainly investigated
OsIPMS1	Os11g0142500	LOC_Os11g04670	seed	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Disruption of OsIPMS1 resulted in low seed vigor under various conditions, which might be tightly associated with the reduction of amino acids in germinating seeds
OsIPMS1	Os11g0142500	LOC_Os11g04670	seed	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Eleven amino acids that associated with stress tolerance, GA biosynthesis and tricarboxylic acid (TCA) cycle were significantly reduced in osipms1 mutants compared with those in wide type (WT) during seed germination
OsIPMS1	Os11g0142500	LOC_Os11g04670	seed	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Further analysis confirmed that the regulation of OsIPMS1 in seed vigor involved in starch hydrolysis, glycolytic activity and energy levels in germinating seeds
OsIPMS1	Os11g0142500	LOC_Os11g04670	seed	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	The effects of seed priming were tightly associated with the mRNA levels of OsIPMS1 in priming seeds
OsIPMS1	Os11g0142500	LOC_Os11g04670	seed	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	The OsIPMS1 might be used as a biomarker to determine the best stop time-point of seed priming in rice
OsIPMS1	Os11g0142500	LOC_Os11g04670	seed	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	This study provides novel insights into the function of OsIPMS1 on seed vigor and should have practical applications in seed priming of rice
OsIPMS1	Os11g0142500	LOC_Os11g04670	starch	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Further analysis confirmed that the regulation of OsIPMS1 in seed vigor involved in starch hydrolysis, glycolytic activity and energy levels in germinating seeds
OsIPMS1	Os11g0142500	LOC_Os11g04670	seed germination	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Eleven amino acids that associated with stress tolerance, GA biosynthesis and tricarboxylic acid (TCA) cycle were significantly reduced in osipms1 mutants compared with those in wide type (WT) during seed germination
OsIPMS1	Os11g0142500	LOC_Os11g04670	stress	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Eleven amino acids that associated with stress tolerance, GA biosynthesis and tricarboxylic acid (TCA) cycle were significantly reduced in osipms1 mutants compared with those in wide type (WT) during seed germination
OsIPMS1	Os11g0142500	LOC_Os11g04670	ga	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Eleven amino acids that associated with stress tolerance, GA biosynthesis and tricarboxylic acid (TCA) cycle were significantly reduced in osipms1 mutants compared with those in wide type (WT) during seed germination
OsIPMS1	Os11g0142500	LOC_Os11g04670	GA	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Eleven amino acids that associated with stress tolerance, GA biosynthesis and tricarboxylic acid (TCA) cycle were significantly reduced in osipms1 mutants compared with those in wide type (WT) during seed germination
OsIPMS1	Os11g0142500	LOC_Os11g04670	stress tolerance	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Eleven amino acids that associated with stress tolerance, GA biosynthesis and tricarboxylic acid (TCA) cycle were significantly reduced in osipms1 mutants compared with those in wide type (WT) during seed germination
OsIPMS1	Os11g0142500	LOC_Os11g04670	GA biosynthesis	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	Eleven amino acids that associated with stress tolerance, GA biosynthesis and tricarboxylic acid (TCA) cycle were significantly reduced in osipms1 mutants compared with those in wide type (WT) during seed germination
OsIPMS2	Os12g0138900	LOC_Os12g04440	seed	Influence of isopropylmalate synthase OsIPMS1 on seed vigor associated with amino acid and energy metabolism in rice.	In this study, rice OsIPMS1 and OsIPMS2 was cloned, and the roles of OsIPMS1 in seed vigor were mainly investigated
OSIPP3	Os05g0543000	LOC_Os05g46530	pollen	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis	Pollen-specific expression was observed in case of plants harboring OSIPP3_del4 construct
OSIPP3	Os05g0543000	LOC_Os05g46530	pollen	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis	It can, therefore, be concluded that the OSIPP3 URR between -178 and +108 bp is necessary for conferring pollen-specific expression in Arabidopsis
OSIPP3	Os05g0543000	LOC_Os05g46530	pollen	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis
OSIPP3	Os05g0543000	LOC_Os05g46530	root	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis	OSIPP3_del1 and del2 transgenic plants showed GUS expression in root, anther and silique, while OSIPP3_del3 showed GUS activity only in anthers and siliques
OSIPP3	Os05g0543000	LOC_Os05g46530	inflorescence	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis	OSIPP3 gene (coding for pectin methylesterase inhibitor protein) was isolated from a pre-pollinated inflorescence-specific cDNA library by differential screening of stage-specific libraries from Oryza sativa
OSIPP3	Os05g0543000	LOC_Os05g46530	spikelet	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis	OSIPP3 gene was expressed exclusively in the pre-pollinated spikelets of rice
OSIPP3	Os05g0543000	LOC_Os05g46530	anther	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis	OSIPP3_del1 and del2 transgenic plants showed GUS expression in root, anther and silique, while OSIPP3_del3 showed GUS activity only in anthers and siliques
OSIPP3	Os05g0543000	LOC_Os05g46530	anther	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis
OsIPS1	Os03g0146800	LOC_Os03g05334	primary root	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	An analysis of transgenic plants showed that OsIPS1/2 are independently responsive to Pi signalling and are mainly expressed in lateral roots and in the vascular cylinder in the primary root
OsIPS1	Os03g0146800	LOC_Os03g05334	lateral root	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	An analysis of transgenic plants showed that OsIPS1/2 are independently responsive to Pi signalling and are mainly expressed in lateral roots and in the vascular cylinder in the primary root
OsIPS1	Os03g0146800	LOC_Os03g05334	phosphate	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	Accumulation of the mRNA of OsIPS1/2 was examined by northern blotting and quantitative reverse transcriptase-polymerase chain reaction in whole-root and split-root experiments under treatment with phosphate (Pi) and the Pi analogue phosphite (Phi)
OsIPS1	Os03g0146800	LOC_Os03g05334	shoot	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	OsIPS1 showed much higher mRNA accumulation in roots than OsIPS2, and an opposite trend was seen in shoots
OsIPS1	Os03g0146800	LOC_Os03g05334	pi	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	Accumulation of the mRNA of OsIPS1/2 was examined by northern blotting and quantitative reverse transcriptase-polymerase chain reaction in whole-root and split-root experiments under treatment with phosphate (Pi) and the Pi analogue phosphite (Phi)
OsIPS1	Os03g0146800	LOC_Os03g05334	pi	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	OsIPS1/2 showed both systemic and local responses to Pi starvation, and less than 10% of the overall induced mRNA level was due to the local Pi concentration in roots
OsIPS1	Os03g0146800	LOC_Os03g05334	pi	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	An analysis of transgenic plants showed that OsIPS1/2 are independently responsive to Pi signalling and are mainly expressed in lateral roots and in the vascular cylinder in the primary root
OsIPS1	Os03g0146800	LOC_Os03g05334	pi	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones
OsIPS1	Os03g0146800	LOC_Os03g05334	root	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	Accumulation of the mRNA of OsIPS1/2 was examined by northern blotting and quantitative reverse transcriptase-polymerase chain reaction in whole-root and split-root experiments under treatment with phosphate (Pi) and the Pi analogue phosphite (Phi)
OsIPS1	Os03g0146800	LOC_Os03g05334	root	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	OsIPS1 showed much higher mRNA accumulation in roots than OsIPS2, and an opposite trend was seen in shoots
OsIPS1	Os03g0146800	LOC_Os03g05334	root	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	OsIPS1/2 showed both systemic and local responses to Pi starvation, and less than 10% of the overall induced mRNA level was due to the local Pi concentration in roots
OsIPS1	Os03g0146800	LOC_Os03g05334	root	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	An analysis of transgenic plants showed that OsIPS1/2 are independently responsive to Pi signalling and are mainly expressed in lateral roots and in the vascular cylinder in the primary root
OsIPT2	Os03g0356900	LOC_Os03g24240	auxin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Furthermore, our chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7
OsIPT2	Os03g0356900	LOC_Os03g24240	cytokinin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Furthermore, our chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7
OsIPT7	Os05g0551700	LOC_Os05g47840	auxin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Furthermore, our chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7
OsIPT7	Os05g0551700	LOC_Os05g47840	cytokinin	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Furthermore, our chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7
OsIQD14	Os08g0115200	LOC_Os08g02250	grain	Rice microtubule-associated protein IQ67-DOMAIN14 regulates rice grain shape by modulating microtubule cytoskeleton dynamics.	Our results indicate that OsIQD14 acts as a key factor in regulating MT rearrangements in rice hull cells and hence the grain shape, and allows effective local cell shape manipulation to improve the rice yield trait
OsIQD14	Os08g0115200	LOC_Os08g02250	yield	Rice microtubule-associated protein IQ67-DOMAIN14 regulates rice grain shape by modulating microtubule cytoskeleton dynamics.	Our results indicate that OsIQD14 acts as a key factor in regulating MT rearrangements in rice hull cells and hence the grain shape, and allows effective local cell shape manipulation to improve the rice yield trait
OsIRL	Os01g0106400	LOC_Os01g01660	homeostasis	Overexpression of rice isoflavone reductase-like gene (OsIRL) confers tolerance to reactive oxygen species	Our results strongly suggest the involvement of OsIRL in homeostasis of ROS
OsIRL	Os01g0106400	LOC_Os01g01660	phytohormone	A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor	These results suggest that the expression of OsIRL is positively regulated by phytohormones such as JA, and negatively by phytohormones such as SA, ABA
OsIRL	Os01g0106400	LOC_Os01g01660	root	Overexpression of rice isoflavone reductase-like gene (OsIRL) confers tolerance to reactive oxygen species	Using Northern and Western blot analyses, the OsIRL gene and protein were shown to be down-regulated in young seedling roots treated with reduced glutathione (GSH) and diphenyleneiodonium (DPI), known quenchers of reactive oxygen species (ROS)
OsIRL	Os01g0106400	LOC_Os01g01660	seedling	Overexpression of rice isoflavone reductase-like gene (OsIRL) confers tolerance to reactive oxygen species	Using Northern and Western blot analyses, the OsIRL gene and protein were shown to be down-regulated in young seedling roots treated with reduced glutathione (GSH) and diphenyleneiodonium (DPI), known quenchers of reactive oxygen species (ROS)
OsIRL	Os01g0106400	LOC_Os01g01660	jasmonic acid	A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor	Expression of OsIRL was induced by treatment with a fungal elicitor and jasmonic acid as well as by inoculation with rice blast fungus
OsIRL	Os01g0106400	LOC_Os01g01660	jasmonic	A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor	Expression of OsIRL was induced by treatment with a fungal elicitor and jasmonic acid as well as by inoculation with rice blast fungus
OsIRL	Os01g0106400	LOC_Os01g01660	ABA	Overexpression of rice isoflavone reductase-like gene (OsIRL) confers tolerance to reactive oxygen species	Results showed that the OsIRL transgenic rice line activated by ABA treatment was tolerant against MV and G/GO-induced stress in rice leave and suspension-cultured cells
OsIRL	Os01g0106400	LOC_Os01g01660	blast	A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor	Expression of OsIRL was induced by treatment with a fungal elicitor and jasmonic acid as well as by inoculation with rice blast fungus
OsIRL	Os01g0106400	LOC_Os01g01660	blast	A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor	A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor
OsIRL	Os01g0106400	LOC_Os01g01660	salicylic acid	A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor	Treatment with salicylic acid (SA, 5 mM) strongly inhibited expression of OsIRL in response to fungal elicitor and JA, while abscisic acid (ABA, 200 muM) also strongly antagonized OsIRL induction by JA, but had only a weak effect on induction by the fungal elicitor
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	root	Isolation and characterization of IRO2, a novel iron-regulated bHLH transcription factor in graminaceous plants	Of these genes, a putative basic helix-loop-helix (bHLH) transcription factor gene, named OsIRO2, was strongly expressed in both roots and shoots during Fe deficiency stress
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	vegetative	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	OsIRO2 expression in vegetative tissues was restricted almost exclusively to vascular bundles of roots and leaves, and to the root exodermis under Fe-sufficient conditions, and expanded to all tissues of roots and leaves in response to Fe deficiency
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	root	The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions	Microarray analysis demonstrated that OsIRO2 regulates 59 Fe-deficiency-induced genes in roots
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	transporter	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	Gene expression analysis of rice iron-regulated bHLH transcription factor OsIRO2, nicotianamine synthases 1 and 2 (NAS1 and NAS2), yellow-stripe like transporter 15 (YSL15) and iron-regulated transporter (IRT1) indicated that ethylene caused an increase in transcript abundance of both Fe (II) and Fe (III)-phytosiderophore uptake systems
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	ethylene	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	Gene expression analysis of rice iron-regulated bHLH transcription factor OsIRO2, nicotianamine synthases 1 and 2 (NAS1 and NAS2), yellow-stripe like transporter 15 (YSL15) and iron-regulated transporter (IRT1) indicated that ethylene caused an increase in transcript abundance of both Fe (II) and Fe (III)-phytosiderophore uptake systems
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	ethylene	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	transcription factor	The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions	To elucidate the regulation mechanisms of the genes related to Fe acquisition in graminaceous plants, we characterized the Fe-deficiency-inducible basic helix-loop-helix transcription factor OsIRO2 in rice
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	transcription factor	The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions	Some of these genes, including two transcription factors upregulated by Fe deficiency, possessed the OsIRO2 binding sequence in their upstream regions
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	transcription factor	The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions	We propose a novel gene regulation network for Fe-deficiency responses, including OsIRO2, IDEs and the two transcription factors
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	shoot	Isolation and characterization of IRO2, a novel iron-regulated bHLH transcription factor in graminaceous plants	Of these genes, a putative basic helix-loop-helix (bHLH) transcription factor gene, named OsIRO2, was strongly expressed in both roots and shoots during Fe deficiency stress
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	transcription factor	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	Gene expression analysis of rice iron-regulated bHLH transcription factor OsIRO2, nicotianamine synthases 1 and 2 (NAS1 and NAS2), yellow-stripe like transporter 15 (YSL15) and iron-regulated transporter (IRT1) indicated that ethylene caused an increase in transcript abundance of both Fe (II) and Fe (III)-phytosiderophore uptake systems
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	transcription factor	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	vascular bundle	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	OsIRO2 expression in vegetative tissues was restricted almost exclusively to vascular bundles of roots and leaves, and to the root exodermis under Fe-sufficient conditions, and expanded to all tissues of roots and leaves in response to Fe deficiency
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	transcription factor	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	Previously, we reported that an Fe-deficiency-inducible basic helix-loop-helix (bHLH) transcription factor, OsIRO2, is responsible for regulation of the genes involved in Fe homeostasis in rice
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	transcription factor	Isolation and characterization of IRO2, a novel iron-regulated bHLH transcription factor in graminaceous plants	Of these genes, a putative basic helix-loop-helix (bHLH) transcription factor gene, named OsIRO2, was strongly expressed in both roots and shoots during Fe deficiency stress
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	growth	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	Plants overexpressing OsIRO2 grew better, and OsIRO2-repressed plants showed poor growth compared to non-transformant rice after germination
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	growth	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	grain	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	These results suggest that OsIRO2 is synchronously expressed with genes involved in Fe homeostasis, and performs a crucial function in regulation not only of Fe uptake from soil but also Fe transport during germination and Fe translocation to grain during seed maturation
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	homeostasis	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	Previously, we reported that an Fe-deficiency-inducible basic helix-loop-helix (bHLH) transcription factor, OsIRO2, is responsible for regulation of the genes involved in Fe homeostasis in rice
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	homeostasis	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	These results suggest that OsIRO2 is synchronously expressed with genes involved in Fe homeostasis, and performs a crucial function in regulation not only of Fe uptake from soil but also Fe transport during germination and Fe translocation to grain during seed maturation
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	flower	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	OsIRO2 expression was also detected in flowers and developing seeds
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	yield	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	iron	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	Gene expression analysis of rice iron-regulated bHLH transcription factor OsIRO2, nicotianamine synthases 1 and 2 (NAS1 and NAS2), yellow-stripe like transporter 15 (YSL15) and iron-regulated transporter (IRT1) indicated that ethylene caused an increase in transcript abundance of both Fe (II) and Fe (III)-phytosiderophore uptake systems
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	seed	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	OsIRO2 expression was also detected in flowers and developing seeds
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	seed	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	These results suggest that OsIRO2 is synchronously expressed with genes involved in Fe homeostasis, and performs a crucial function in regulation not only of Fe uptake from soil but also Fe transport during germination and Fe translocation to grain during seed maturation
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	iron	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	root	OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil	OsIRO2 expression in vegetative tissues was restricted almost exclusively to vascular bundles of roots and leaves, and to the root exodermis under Fe-sufficient conditions, and expanded to all tissues of roots and leaves in response to Fe deficiency
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	growth	Enhancement of Iron Acquisition in Rice by the Mugineic Acid Synthase Gene With Ferric Iron Reductase Gene and OsIRO2 Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils.	 In this study, we produced a new Fe deficiency-tolerant rice by the additional introduction of a barley IDS3 genome fragment with refre1/372 and OsIRO2 (named as IRI lines) for further enhancement in Strategy II phytosiderophore productivity and better growth performance in various environments
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	growth	Enhancement of Iron Acquisition in Rice by the Mugineic Acid Synthase Gene With Ferric Iron Reductase Gene and OsIRO2 Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils.	 Our results show that an enhanced tolerance was observed in OsIRO2 introduced line at the early growth stage, refre1/372 introduced line in the late stage, and RI line in all stages among five types of cultivation method
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	tolerance	Enhancement of Iron Acquisition in Rice by the Mugineic Acid Synthase Gene With Ferric Iron Reductase Gene and OsIRO2 Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils.	Enhancement of Iron Acquisition in Rice by the Mugineic Acid Synthase Gene With Ferric Iron Reductase Gene and OsIRO2 Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils.
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	tolerance	Enhancement of Iron Acquisition in Rice by the Mugineic Acid Synthase Gene With Ferric Iron Reductase Gene and OsIRO2 Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils.	 Our results show that an enhanced tolerance was observed in OsIRO2 introduced line at the early growth stage, refre1/372 introduced line in the late stage, and RI line in all stages among five types of cultivation method
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	tolerance	Enhancement of Iron Acquisition in Rice by the Mugineic Acid Synthase Gene With Ferric Iron Reductase Gene and OsIRO2 Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils.	 Moreover, we demonstrated that new IRI rice lines exhibited enhanced tolerance to Fe deficiency compared to nontransgenic (NT) rice and rice lines harboring the overexpressing OsIRO2 or the IDS3 fragment under submerged calcareous soil
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	iron	Enhancement of Iron Acquisition in Rice by the Mugineic Acid Synthase Gene With Ferric Iron Reductase Gene and OsIRO2 Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils.	Enhancement of Iron Acquisition in Rice by the Mugineic Acid Synthase Gene With Ferric Iron Reductase Gene and OsIRO2 Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils.
OsIRO2|OsbHLH056	Os01g0952800	LOC_Os01g72370	Fe homeostasis	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	root	Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa	RESULTS: Transcript abundance of one nuclear located basic helix-loop-helix family transcription factor, OsIRO3, is up-regulated from 25- to 90-fold under Fe deficiency in both root and shoot respectively
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	transcription factor	Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa	RESULTS: Transcript abundance of one nuclear located basic helix-loop-helix family transcription factor, OsIRO3, is up-regulated from 25- to 90-fold under Fe deficiency in both root and shoot respectively
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	transcription factor	Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa	CONCLUSION: A novel Fe regulated bHLH transcription factor (OsIRO3) that plays an important role for Fe homeostasis in rice was identified
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	homeostasis	Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa	CONCLUSION: A novel Fe regulated bHLH transcription factor (OsIRO3) that plays an important role for Fe homeostasis in rice was identified
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	shoot	Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa	RESULTS: Transcript abundance of one nuclear located basic helix-loop-helix family transcription factor, OsIRO3, is up-regulated from 25- to 90-fold under Fe deficiency in both root and shoot respectively
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	shoot	Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa	Furthermore, the Fe concentration in shoots of transgenic rice plants over-expressing OsIRO3 was less than that in wild-type plants
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	leaf	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 OsIRO3 is expressed in the roots, leaves, and base nodes, with a higher level in leaf blades at the vegetative growth stage
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	root	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 Knockout of OsIRO3 resulted in a hypersensitivity to Fe deficiency, with severe necrosis on young leaves and defective root development
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	growth	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 OsIRO3 is expressed in the roots, leaves, and base nodes, with a higher level in leaf blades at the vegetative growth stage
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	development	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 Knockout of OsIRO3 resulted in a hypersensitivity to Fe deficiency, with severe necrosis on young leaves and defective root development
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	vegetative	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 OsIRO3 is expressed in the roots, leaves, and base nodes, with a higher level in leaf blades at the vegetative growth stage
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	root development	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 Knockout of OsIRO3 resulted in a hypersensitivity to Fe deficiency, with severe necrosis on young leaves and defective root development
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	homeostasis	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	homeostasis	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 However, the molecular mechanisms by which OsIRO3 regulate Fe homeostasis is unclear
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	homeostasis	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 Here, we report that OsIRO3 is essential for responding to Fe deficiency and maintaining Fe homeostasis in rice
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	iron	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 However, the molecular mechanisms by which OsIRO3 regulate Fe homeostasis is unclear
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 Here, we report that OsIRO3 is essential for responding to Fe deficiency and maintaining Fe homeostasis in rice
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 Knockout of OsIRO3 resulted in a hypersensitivity to Fe deficiency, with severe necrosis on young leaves and defective root development
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	 Thus, we conclude that OsIRO3 plays a key role in responding to Fe deficiency and regulates NA levels by directly, negatively regulating the OsNAS3 expression
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	iron homeostasis	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	transcription factor	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	homeostasis	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	homeostasis	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.	 We place our results in the context of the existing literature and generate a model describing the role of OsIRO3 in rice Fe homeostasis and reinforce the essential function of OsIRO3 in the rice Fe deficiency response
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	iron	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.	 We place our results in the context of the existing literature and generate a model describing the role of OsIRO3 in rice Fe homeostasis and reinforce the essential function of OsIRO3 in the rice Fe deficiency response
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	iron homeostasis	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	transcription factor	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	 Further analysis revealed that OsIRO3 directly regulated the expression of IRON-RELATED BHLH TRANSCRIPTION FACTOR 2 (OsIRO2), which encodes a positive regulator of the Fe uptake system
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	root	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	 Loss-of-function of OsIRO3 caused upregulation of Fe deficiency-associated genes in the root
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	homeostasis	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	homeostasis	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	 Further investigation demonstrated that OsIRO3 interacted with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1(OsPRI1) and OsPRI2, and
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	homeostasis	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	 This work sheds light on the molecular mechanism by which OsIRO3 modulates Fe homeostasis in rice
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	iron	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	 Further investigation demonstrated that OsIRO3 interacted with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1(OsPRI1) and OsPRI2, and
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	 Loss-of-function of OsIRO3 caused upregulation of Fe deficiency-associated genes in the root
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	 Further analysis revealed that OsIRO3 directly regulated the expression of IRON-RELATED BHLH TRANSCRIPTION FACTOR 2 (OsIRO2), which encodes a positive regulator of the Fe uptake system
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	 This work sheds light on the molecular mechanism by which OsIRO3 modulates Fe homeostasis in rice
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	iron homeostasis	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	 Further investigation demonstrated that OsIRO3 interacted with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1(OsPRI1) and OsPRI2, and
OsIRO3|OsOsbHLH063	Os03g0379300	LOC_Os03g26210	Fe homeostasis	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2
OsIRT1	Os03g0667500	LOC_Os03g46470	ethylene	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsIRT1	Os03g0667500	LOC_Os03g46470	transporter	Cloning an iron-regulated metal transporter from rice	This suggests that OsIRT1 is a functional metal transporter for iron, and is actively engaged in Fe uptake from soils, especially under limiting conditions
OsIRT1	Os03g0667500	LOC_Os03g46470	root	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
OsIRT1	Os03g0667500	LOC_Os03g46470	transporter	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+	In spite of being a Strategy II plant, however, rice (Oryza sativa) contains the previously identified Fe2+ transporter OsIRT1
OsIRT1	Os03g0667500	LOC_Os03g46470	transporter	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+	Real-time PCR analysis revealed that OsIRT1 and OsIRT2 are expressed predominantly in roots, and these transporters are induced by low-Fe conditions
OsIRT1	Os03g0667500	LOC_Os03g46470	iron	Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice	Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice
OsIRT1	Os03g0667500	LOC_Os03g46470	root	Cloning an iron-regulated metal transporter from rice	Northern blot analysis revealed that OsIRT1 mRNA was predominantly expressed in roots and was induced by Fe and Cu‐deficiency
OsIRT1	Os03g0667500	LOC_Os03g46470	transporter	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice	Yeast mutants expressing OsIRT1 and OsIRT2, which encode the rice Fe2+ transporter, became more sensitive to Cd, suggesting that Cd was absorbed by OsIRT1 and OsIRT2
OsIRT1	Os03g0667500	LOC_Os03g46470	transporter	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice
OsIRT1	Os03g0667500	LOC_Os03g46470	transcription factor	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsIRT1	Os03g0667500	LOC_Os03g46470	transporter	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
OsIRT1	Os03g0667500	LOC_Os03g46470	iron	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
OsIRT1	Os03g0667500	LOC_Os03g46470	transporter	Mutational reconstructed ferric chelate reductase confers enhanced tolerance in rice to iron deficiency in calcareous soil	A yeast Fe3+ chelate-reductase gene refre1/372, selected for better performance at high pH, was fused to the promoter of the Fe-regulated transporter, OsIRT1, and introduced into rice plants
OsIRT1	Os03g0667500	LOC_Os03g46470	homeostasis	Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice	We generated transgenic rice plants over-expressing OsIRT1 to evaluate its functional roles in metal homeostasis
OsIRT1	Os03g0667500	LOC_Os03g46470	cadmium	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice
OsIRT1	Os03g0667500	LOC_Os03g46470	root	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+	Real-time PCR analysis revealed that OsIRT1 and OsIRT2 are expressed predominantly in roots, and these transporters are induced by low-Fe conditions
OsIRT1	Os03g0667500	LOC_Os03g46470	root	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+	OsIRT1 promoter-GUS analysis revealed that OsIRT1 is expressed in the epidermis and exodermis of the elongating zone and in the inner layer of the cortex of the mature zone of Fe-deficient roots
OsIRT1	Os03g0667500	LOC_Os03g46470	iron	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice
OsIRT1	Os03g0667500	LOC_Os03g46470	transporter	OsZIP4, a novel zinc-regulated zinc transporter in rice	Four distinct genes, OsZIP4, OsZIP5, OsZIP6, and OsZIP7 that exhibit sequence similarity to the rice ferrous ion transporter, OsIRT1, were isolated
OsIRT1	Os03g0667500	LOC_Os03g46470	zinc	Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice	Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice
OsIRT1	Os03g0667500	LOC_Os03g46470	mitochondria	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
OsIRT1	Os03g0667500	LOC_Os03g46470	grain	Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice	This demonstrates that OsIRT1 can be used for enhancing micronutrient levels in rice grains
OsIRT1	Os03g0667500	LOC_Os03g46470	iron	Cloning an iron-regulated metal transporter from rice	When expressed in yeast cells, OsIRT1 cDNA reversed the growth defects of the yeast iron‐uptake mutant
OsIRT1	Os03g0667500	LOC_Os03g46470	iron	Cloning an iron-regulated metal transporter from rice	This suggests that OsIRT1 is a functional metal transporter for iron, and is actively engaged in Fe uptake from soils, especially under limiting conditions
OsIRT1	Os03g0667500	LOC_Os03g46470	growth	Cloning an iron-regulated metal transporter from rice	When expressed in yeast cells, OsIRT1 cDNA reversed the growth defects of the yeast iron‐uptake mutant
OsIRT2	Os03g0667300	LOC_Os03g46454	growth	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+	When expressed in yeast (Saccharomyces cerevisiae) cells, OsIRT2 cDNA reversed the growth defects of a yeast Fe-uptake mutant
OsIRT2	Os03g0667300	LOC_Os03g46454	cadmium	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice
OsIRT2	Os03g0667300	LOC_Os03g46454	transporter	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+	Real-time PCR analysis revealed that OsIRT1 and OsIRT2 are expressed predominantly in roots, and these transporters are induced by low-Fe conditions
OsIRT2	Os03g0667300	LOC_Os03g46454	root	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+	Real-time PCR analysis revealed that OsIRT1 and OsIRT2 are expressed predominantly in roots, and these transporters are induced by low-Fe conditions
OsIRT2	Os03g0667300	LOC_Os03g46454	iron	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice
OsIRT2	Os03g0667300	LOC_Os03g46454	transporter	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice	Yeast mutants expressing OsIRT1 and OsIRT2, which encode the rice Fe2+ transporter, became more sensitive to Cd, suggesting that Cd was absorbed by OsIRT1 and OsIRT2
OsIRT2	Os03g0667300	LOC_Os03g46454	transporter	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2+transporters OsIRT1 and OsIRT2 in rice
OsIRX10	Os01g0926700	LOC_Os01g70200	culm	Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification	Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification
OsIRX10	Os01g0926700	LOC_Os01g70200	cell wall	Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification	Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification
OsIRX10	Os01g0926700	LOC_Os01g70200	biomass	Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification	Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification
OsIRX14	Os06g0687900	LOC_Os06g47340	stem strength	Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis	The two complemented irx14 + OsIRX14 lines demonstrated a stem strength that was 64 and 70% that of wild type
OsIRX9	Os07g0694400	LOC_Os07g49370	cell wall	Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis	Furthermore, our expression data indicate that OsIRX9 and OsIRX9L may function in building the xylan backbone in the secondary and primary cell walls, respectively
OsIRX9	Os07g0694400	LOC_Os07g49370	stem	Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis	The expression of OsIRX9 in the irx9 mutant resulted in XylT activity of stems that was over double that of wild type plants, and the stem strength of this line increased to 124% above that of wild type
OsIRX9L	Os01g0675500	LOC_Os01g48440	cell wall	Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis	Furthermore, our expression data indicate that OsIRX9 and OsIRX9L may function in building the xylan backbone in the secondary and primary cell walls, respectively
OsISA1|OsPHS8	Os08g0520900	LOC_Os08g40930	starch	Sugary Endosperm is Modulated by Starch Branching Enzyme IIa in Rice (Oryza sativa L.).	Complementary interactions between the starch biosynthesis genes OsISA1 and OsBEIIa determine the mild sugary endosperm mutant, sugary-h, in rice
OsISA1|OsPHS8	Os08g0520900	LOC_Os08g40930	endosperm	Sugary Endosperm is Modulated by Starch Branching Enzyme IIa in Rice (Oryza sativa L.).	Complementary interactions between the starch biosynthesis genes OsISA1 and OsBEIIa determine the mild sugary endosperm mutant, sugary-h, in rice
OsISA1|OsPHS8	Os08g0520900	LOC_Os08g40930	starch biosynthesis	Sugary Endosperm is Modulated by Starch Branching Enzyme IIa in Rice (Oryza sativa L.).	Complementary interactions between the starch biosynthesis genes OsISA1 and OsBEIIa determine the mild sugary endosperm mutant, sugary-h, in rice
OSISAP1	Os09g0486500	LOC_Os09g31200	submergence	Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco	We describe here the isolation and characterization of an intronless gene (OSISAP1) from rice encoding a zinc-finger protein that is induced after different types of stresses, namely cold, desiccation, salt, submergence, and heavy metals as well as injury
OSISAP1	Os09g0486500	LOC_Os09g31200	salt	Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco	We describe here the isolation and characterization of an intronless gene (OSISAP1) from rice encoding a zinc-finger protein that is induced after different types of stresses, namely cold, desiccation, salt, submergence, and heavy metals as well as injury
OsiSAP7	Os03g0793000	LOC_Os03g57900	abiotic stress	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Abiotic stress responses of OsiSAP7 were assessed by its overexpression in Arabidopsis under the control of a stress inducible promoter rd29A
OsiSAP7	Os03g0793000	LOC_Os03g57900	ABA	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.
OsiSAP7	Os03g0793000	LOC_Os03g57900	ABA	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Our study suggests that OsiSAP7 acts as a negative regulator of ABA and water-deficit stress signalling by acting as an E3 ubiquitin ligase
OsiSAP7	Os03g0793000	LOC_Os03g57900	stress	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.
OsiSAP7	Os03g0793000	LOC_Os03g57900	stress	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Abiotic stress responses of OsiSAP7 were assessed by its overexpression in Arabidopsis under the control of a stress inducible promoter rd29A
OsiSAP7	Os03g0793000	LOC_Os03g57900	stress	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Our study suggests that OsiSAP7 acts as a negative regulator of ABA and water-deficit stress signalling by acting as an E3 ubiquitin ligase
OsiSAP7	Os03g0793000	LOC_Os03g57900	nucleus	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	OsiSAP7 was chosen to investigate the mechanism of its action based on the dual nature of its sub-cellular localization preferentially in the nucleus or sub-nuclear speckles upon transient expression in onion epidermal cells
OsiSAP7	Os03g0793000	LOC_Os03g57900	nucleus	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	OsiSAP7 was localized evenly in the nucleus under unstressed conditions and in sub-nuclear speckles on MG132 treatment
OsiSAP7	Os03g0793000	LOC_Os03g57900	biotic stress	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Abiotic stress responses of OsiSAP7 were assessed by its overexpression in Arabidopsis under the control of a stress inducible promoter rd29A
OsiSAP7	Os03g0793000	LOC_Os03g57900	Ubiquitin	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	OsiSAP7 exhibits E3 ubiquitin ligase activity in vitro
OsiSAP7	Os03g0793000	LOC_Os03g57900	Ubiquitin	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Our study suggests that OsiSAP7 acts as a negative regulator of ABA and water-deficit stress signalling by acting as an E3 ubiquitin ligase
OsiSAP7	Os03g0793000	LOC_Os03g57900	ABA	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.
OsiSAP7	Os03g0793000	LOC_Os03g57900	ABA	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Our study suggests that OsiSAP7 acts as a negative regulator of ABA and water-deficit stress signalling by acting as an E3 ubiquitin ligase
OsiSAP7	Os03g0793000	LOC_Os03g57900	stress response	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Abiotic stress responses of OsiSAP7 were assessed by its overexpression in Arabidopsis under the control of a stress inducible promoter rd29A
OsiSAP8	Os06g0612800	LOC_Os06g41010	drought	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice
OsiSAP8	Os06g0612800	LOC_Os06g41010	salt	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice	OsiSAP8 is a multiple stress inducible gene, induced by various stresses, namely heat, cold, salt, desiccation, submergence, wounding, heavy metals as well as stress hormone Abscisic acid
OsiSAP8	Os06g0612800	LOC_Os06g41010	salt	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice
OsiSAP8	Os06g0612800	LOC_Os06g41010	submergence	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice	OsiSAP8 is a multiple stress inducible gene, induced by various stresses, namely heat, cold, salt, desiccation, submergence, wounding, heavy metals as well as stress hormone Abscisic acid
OsiSAP8	Os06g0612800	LOC_Os06g41010	cold stress	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice
OsIspF	Os02g0680600	LOC_Os02g45660	chloroplast	A single nucleotide mutation of IspF gene involved in the MEP pathway for isoprenoid biosynthesis causes yellow-green leaf phenotype in rice.	OsIspF was expressed in all tissues detected, and its encoded protein was targeted to the chloroplast
OsIspF	Os02g0680600	LOC_Os02g45660	chloroplast	A single nucleotide mutation of IspF gene involved in the MEP pathway for isoprenoid biosynthesis causes yellow-green leaf phenotype in rice.	OsIspF gene was expressed in all tissues detected, and its encoded protein was targeted to the chloroplast
OsIspF	Os02g0680600	LOC_Os02g45660	map-based cloning	A single nucleotide mutation of IspF gene involved in the MEP pathway for isoprenoid biosynthesis causes yellow-green leaf phenotype in rice.	By map-based cloning of this mutant, we identified OsIspF gene (LOC_Os02g45660) showing significant similarity to IspF gene of Arabidopsis, in which a missense mutation occurred in the mutant, resulting in an amino acid change in the encoded protein
OsIsu1	Os01g0662600	LOC_Os01g47340	iron	Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis	Northern analysis showed that OsIsu1 was down-regulated in iron-deficient rice root
OsIsu1	Os01g0662600	LOC_Os01g47340	iron	Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis	Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis
OsIsu1	Os01g0662600	LOC_Os01g47340	root	Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis	Northern analysis showed that OsIsu1 was down-regulated in iron-deficient rice root
OsIsu1	Os01g0662600	LOC_Os01g47340	mitochondria	Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis	When expressed in onion epidermal cells, OsIsu1::GFP was localized to the mitochondria
OsIsu1	Os01g0662600	LOC_Os01g47340	mitochondria	Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis	Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis
OsITPK6	Os09g0518700	LOC_Os09g34300	breeding	Mutation of Inositol 1,3,4-trisphosphate 5/6-kinase6 Impairs Plant Growth and Phytic Acid Synthesis in Rice.	In the present study, the possibility of establishing a genome editing-based method for breeding low-phytic acid cultivars in rice was explored, in conjunction with the functional determination of OsITPK6
OsiWAK1	Os11g0691100	LOC_Os11g46860	anther	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa
OsiWAK1	Os11g0691100	LOC_Os11g46860	root development	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa
OsiWAK1	Os11g0691100	LOC_Os11g46860	sterility	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa
OsiWAK1	Os11g0691100	LOC_Os11g46860	root	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa
OsiWAK1	Os11g0691100	LOC_Os11g46860	panicle	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa	Examination of the transgenic plants reveals that OsiWAK1 transcript silencing in rice results in dwarf plants because of the reduction in the size of leaves, flag-leaves, internodes and panicle
OsiWAK1	Os11g0691100	LOC_Os11g46860	growth	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa	These data suggest that OsiWAK1 may play an important role in rice plant growth and development
OsiWAK1	Os11g0691100	LOC_Os11g46860	dwarf	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa	Examination of the transgenic plants reveals that OsiWAK1 transcript silencing in rice results in dwarf plants because of the reduction in the size of leaves, flag-leaves, internodes and panicle
OsJAC1	Os12g0247700	LOC_Os12g14440	resistance	Polarized Defence Against Fungal Pathogens Is Mediated by the Jacalin-Related Lectin Domain of Modular Poaceae-Specific Proteins.	Transgenic overexpression of OsJAC1 in rice resulted in quantitative broad-spectrum resistance against different pathogens including bacteria, oomycetes and fungi
OsJAC1	Os12g0247700	LOC_Os12g14440	resistance	Polarized Defence Against Fungal Pathogens Is Mediated by the Jacalin-Related Lectin Domain of Modular Poaceae-Specific Proteins.	Both protein domains of OsJAC1 are required to establish resistance as indicated by single or combined transient expression of individual domains
OsJAC1	Os12g0247700	LOC_Os12g14440	resistance	Polarized Defence Against Fungal Pathogens Is Mediated by the Jacalin-Related Lectin Domain of Modular Poaceae-Specific Proteins.	Altogether, our results identify OsJAC1 as a representative of a novel type of resistance proteins derived from a plant-lineage specific gene fusion event for better function in local pathogen defense
OsJAC1	Os12g0247700	LOC_Os12g14440	defense	Polarized Defence Against Fungal Pathogens Is Mediated by the Jacalin-Related Lectin Domain of Modular Poaceae-Specific Proteins.	Altogether, our results identify OsJAC1 as a representative of a novel type of resistance proteins derived from a plant-lineage specific gene fusion event for better function in local pathogen defense
OsJAC1	Os12g0247700	LOC_Os12g14440	pathogen	Polarized Defence Against Fungal Pathogens Is Mediated by the Jacalin-Related Lectin Domain of Modular Poaceae-Specific Proteins.	Altogether, our results identify OsJAC1 as a representative of a novel type of resistance proteins derived from a plant-lineage specific gene fusion event for better function in local pathogen defense
OsJAC1	Os12g0247700	LOC_Os12g14440	jasmonic	Overexpression of OsJAC1, a Lectin Gene, Suppresses the Coleoptile and Stem Elongation in Rice	) gene OsJAC1 encoding a mannose-binding jacalin-related lectin, and found that OsJAC1 was jasmonic acid (JA) inducible
OsJAC1	Os12g0247700	LOC_Os12g14440	ja	Overexpression of OsJAC1, a Lectin Gene, Suppresses the Coleoptile and Stem Elongation in Rice	In addition, compared with coleoptiles of wild-type plants, those of OsJAC1 overexpression rice were more sensitive to JA treatment
OsJAC1	Os12g0247700	LOC_Os12g14440	jasmonic acid	Overexpression of OsJAC1, a Lectin Gene, Suppresses the Coleoptile and Stem Elongation in Rice	) gene OsJAC1 encoding a mannose-binding jacalin-related lectin, and found that OsJAC1 was jasmonic acid (JA) inducible
OsJAC1	Os12g0247700	LOC_Os12g14440	JA	Overexpression of OsJAC1, a Lectin Gene, Suppresses the Coleoptile and Stem Elongation in Rice	In addition, compared with coleoptiles of wild-type plants, those of OsJAC1 overexpression rice were more sensitive to JA treatment
OsJAC1	Os12g0247700	LOC_Os12g14440	jasmonate	Cloning and expression of a novel cDNA encoding a mannose-specific jacalin-related lectin from Oryza sativa.	And methyl jasmonate could induce the expression of OsJAC1
OsJAC1	Os12g0247700	LOC_Os12g14440	methyl jasmonate	Cloning and expression of a novel cDNA encoding a mannose-specific jacalin-related lectin from Oryza sativa.	And methyl jasmonate could induce the expression of OsJAC1
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	defense response	OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice	OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	seed development	Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation	In addition, OsJAR1 was required for normal seed development in rice under field conditions
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	jasmonic acid	Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling	In WT seedlings, OsJar1 transcripts were up-regulated transiently in response to treatment with exogenous methyl-jasmonic acid (MeJA)
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	defense	OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice	OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	defense	Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation	Our results suggest that OsJAR1 possesses at least two major functions in rice defense and development that cannot be complemented by the additional OsJAR2 gene function, although this gene previously showed overlapping enzyme activity in vitro
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	insect	Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation	Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	resistant	Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling	We isolated rice JASMONATE RESISTANT 1 (osjar1) mutants from the Tos17 mutant panel by BLAST search
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	blast	OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice	The osjar1 mutant was also found to be more susceptible to the blast fungus than the parental wild type
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	jasmonic	Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling	In WT seedlings, OsJar1 transcripts were up-regulated transiently in response to treatment with exogenous methyl-jasmonic acid (MeJA)
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	blast	OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling	In contrast, only the expression of OsJAR1 was associated with the accumulation of JA-Ile after blast infection
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	ja	Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling	In summary, this paper demonstrated that OsJar1 modulates light and JA signalling in the photomorphogenesis of rice
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	jasmonate	Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling	We isolated rice JASMONATE RESISTANT 1 (osjar1) mutants from the Tos17 mutant panel by BLAST search
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	jasmonic	OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling	OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	jasmonic acid	OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling	OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	seedling	Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling	In WT seedlings, OsJar1 transcripts were up-regulated transiently in response to treatment with exogenous methyl-jasmonic acid (MeJA)
OsJar1|OsGH3.5|OsGH3-5	Os05g0586200	LOC_Os05g50890	seed	Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation	In addition, OsJAR1 was required for normal seed development in rice under field conditions
OsJAR2|OsGH3.3|OsGH3-3	Os01g0221100	LOC_Os01g12160	jasmonic	OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling	OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling
OsJAR2|OsGH3.3|OsGH3-3	Os01g0221100	LOC_Os01g12160	jasmonic acid	OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling	OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	drought	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	These results show that OsJAZ1 could act as a transcriptional regulator of the OsbHLH148-related jasmonate signaling pathway leading to drought tolerance
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	jasmonate	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	These results show that OsJAZ1 could act as a transcriptional regulator of the OsbHLH148-related jasmonate signaling pathway leading to drought tolerance
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	drought tolerance	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	These results show that OsJAZ1 could act as a transcriptional regulator of the OsbHLH148-related jasmonate signaling pathway leading to drought tolerance
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	JA signalling repressor	Jasmonic acid regulates spikelet development in rice	We show that EG1 is a plastid-targeted lipase that participates in JA biosynthesis, and EG2/OsJAZ1 is a JA signalling repressor that interacts with a putative JA receptor, OsCOI1b, to trigger OsJAZ1's degradation during spikelet development
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	root	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	In addition, there were significant differences in shoot and root length between the OsJAZ1 transgenic and WT plants under the MeJA and ABA treatments
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	shoot	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	In addition, there were significant differences in shoot and root length between the OsJAZ1 transgenic and WT plants under the MeJA and ABA treatments
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	resistance	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	resistance	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	In this study, OsJAZ1 was investigated for its role in drought resistance in rice
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	resistance	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	These results together suggest that OsJAZ1 plays a role in regulating the drought resistance of rice partially via the ABA and JA pathways
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	drought	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	drought	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	In this study, OsJAZ1 was investigated for its role in drought resistance in rice
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	drought	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	These results together suggest that OsJAZ1 plays a role in regulating the drought resistance of rice partially via the ABA and JA pathways
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	abiotic stress	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	Expression of OsJAZ1 was strongly responsive to JA treatment, and it was slightly responsive to ABA, salicylic acid, and abiotic stresses including drought, salinity, and cold
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ABA	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ABA	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	In addition, there were significant differences in shoot and root length between the OsJAZ1 transgenic and WT plants under the MeJA and ABA treatments
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ABA	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	These results together suggest that OsJAZ1 plays a role in regulating the drought resistance of rice partially via the ABA and JA pathways
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	salicylic acid	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	Expression of OsJAZ1 was strongly responsive to JA treatment, and it was slightly responsive to ABA, salicylic acid, and abiotic stresses including drought, salinity, and cold
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	cytoplasm	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	A subcellular localization assay indicated that OsJAZ1 was localized in both the nucleus and cytoplasm
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	biotic stress	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	Expression of OsJAZ1 was strongly responsive to JA treatment, and it was slightly responsive to ABA, salicylic acid, and abiotic stresses including drought, salinity, and cold
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	nucleus	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	A subcellular localization assay indicated that OsJAZ1 was localized in both the nucleus and cytoplasm
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ABA	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ABA	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	In addition, there were significant differences in shoot and root length between the OsJAZ1 transgenic and WT plants under the MeJA and ABA treatments
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ABA	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	These results together suggest that OsJAZ1 plays a role in regulating the drought resistance of rice partially via the ABA and JA pathways
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ja	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ja	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	Expression of OsJAZ1 was strongly responsive to JA treatment, and it was slightly responsive to ABA, salicylic acid, and abiotic stresses including drought, salinity, and cold
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ja	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	These results together suggest that OsJAZ1 plays a role in regulating the drought resistance of rice partially via the ABA and JA pathways
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	JA	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	JA	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	Expression of OsJAZ1 was strongly responsive to JA treatment, and it was slightly responsive to ABA, salicylic acid, and abiotic stresses including drought, salinity, and cold
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	JA	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	These results together suggest that OsJAZ1 plays a role in regulating the drought resistance of rice partially via the ABA and JA pathways
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	drought resistance	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	drought resistance	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	In this study, OsJAZ1 was investigated for its role in drought resistance in rice
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	drought resistance	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	These results together suggest that OsJAZ1 plays a role in regulating the drought resistance of rice partially via the ABA and JA pathways
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	root length	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	In addition, there were significant differences in shoot and root length between the OsJAZ1 transgenic and WT plants under the MeJA and ABA treatments
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	jasmonate	The OsJAZ1 degron modulates jasmonate signaling sensitivity during rice development.	The OsJAZ1 degron modulates jasmonate signaling sensitivity during rice development.
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ja	The OsJAZ1 degron modulates jasmonate signaling sensitivity during rice development.	To clarify this question, we performed bioassays and genetic experiments to uncover the function of the OsJAZ1 degron in rice JA signaling
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	JA	The OsJAZ1 degron modulates jasmonate signaling sensitivity during rice development.	To clarify this question, we performed bioassays and genetic experiments to uncover the function of the OsJAZ1 degron in rice JA signaling
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	development	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	spikelet	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	ja	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	JA	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	spikelet development	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ1|OsTIFY3|EG2	Os04g0653000	LOC_Os04g55920	JA signaling	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ10|OsTIFY11b	Os03g0181100	LOC_Os03g08330	defense	Hydrogen peroxide regulates the Osa-miR156-OsSPL2/OsTIFY11b module in rice	The results suggested that H2 O2 accumulation in rice suppresses the expression of miR156, and induces the expression of its target genes, OsSPL2 and OsTIFY11b, whose proteins interact in the nucleus to regulate the expression of OsRBBI3-3, which is involved in plant defense.
OsJAZ11	Os03g0180900	LOC_Os03g08320	development	OsJAZ11 regulates spikelet and seed development in rice.	OsJAZ11 regulates spikelet and seed development in rice.
OsJAZ11	Os03g0180900	LOC_Os03g08320	development	OsJAZ11 regulates spikelet and seed development in rice.	 We propose that OsJAZ11 participates in the regulation of seed size and spikelet development by coordinating the expression of JA-related, OsGW7 and MADS genes
OsJAZ11	Os03g0180900	LOC_Os03g08320	spikelet	OsJAZ11 regulates spikelet and seed development in rice.	OsJAZ11 regulates spikelet and seed development in rice.
OsJAZ11	Os03g0180900	LOC_Os03g08320	spikelet	OsJAZ11 regulates spikelet and seed development in rice.	 Constitutive expression of OsJAZ11 dramatically influenced spikelet morphogenesis leading to extra glume-like structures, open hull, and abnormal numbers of floral organs
OsJAZ11	Os03g0180900	LOC_Os03g08320	spikelet	OsJAZ11 regulates spikelet and seed development in rice.	 We propose that OsJAZ11 participates in the regulation of seed size and spikelet development by coordinating the expression of JA-related, OsGW7 and MADS genes
OsJAZ11	Os03g0180900	LOC_Os03g08320	seed	OsJAZ11 regulates spikelet and seed development in rice.	OsJAZ11 regulates spikelet and seed development in rice.
OsJAZ11	Os03g0180900	LOC_Os03g08320	seed	OsJAZ11 regulates spikelet and seed development in rice.	 In the present study, we report novel role of a jasmonic acid (JA) signaling repressor, OsJAZ11 controlling rice seed width and weight
OsJAZ11	Os03g0180900	LOC_Os03g08320	seed	OsJAZ11 regulates spikelet and seed development in rice.	 Transgenic rice lines overexpressing OsJAZ11 exhibited up to a 14% increase in seed width and ~30% increase in seed weight compared to wild type (WT)
OsJAZ11	Os03g0180900	LOC_Os03g08320	seed	OsJAZ11 regulates spikelet and seed development in rice.	 We propose that OsJAZ11 participates in the regulation of seed size and spikelet development by coordinating the expression of JA-related, OsGW7 and MADS genes
OsJAZ11	Os03g0180900	LOC_Os03g08320	floral	OsJAZ11 regulates spikelet and seed development in rice.	 Constitutive expression of OsJAZ11 dramatically influenced spikelet morphogenesis leading to extra glume-like structures, open hull, and abnormal numbers of floral organs
OsJAZ11	Os03g0180900	LOC_Os03g08320	seed weight	OsJAZ11 regulates spikelet and seed development in rice.	 Transgenic rice lines overexpressing OsJAZ11 exhibited up to a 14% increase in seed width and ~30% increase in seed weight compared to wild type (WT)
OsJAZ11	Os03g0180900	LOC_Os03g08320	floral organ	OsJAZ11 regulates spikelet and seed development in rice.	 Constitutive expression of OsJAZ11 dramatically influenced spikelet morphogenesis leading to extra glume-like structures, open hull, and abnormal numbers of floral organs
OsJAZ11	Os03g0180900	LOC_Os03g08320	jasmonic	OsJAZ11 regulates spikelet and seed development in rice.	 In the present study, we report novel role of a jasmonic acid (JA) signaling repressor, OsJAZ11 controlling rice seed width and weight
OsJAZ11	Os03g0180900	LOC_Os03g08320	jasmonic acid	OsJAZ11 regulates spikelet and seed development in rice.	 In the present study, we report novel role of a jasmonic acid (JA) signaling repressor, OsJAZ11 controlling rice seed width and weight
OsJAZ11	Os03g0180900	LOC_Os03g08320	seed size	OsJAZ11 regulates spikelet and seed development in rice.	 We propose that OsJAZ11 participates in the regulation of seed size and spikelet development by coordinating the expression of JA-related, OsGW7 and MADS genes
OsJAZ11	Os03g0180900	LOC_Os03g08320	seed development	OsJAZ11 regulates spikelet and seed development in rice.	OsJAZ11 regulates spikelet and seed development in rice.
OsJAZ11	Os03g0180900	LOC_Os03g08320	spikelet development	OsJAZ11 regulates spikelet and seed development in rice.	 We propose that OsJAZ11 participates in the regulation of seed size and spikelet development by coordinating the expression of JA-related, OsGW7 and MADS genes
OsJAZ13	Os10g0391400	LOC_Os10g25230	growth	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	Gene-expression analysis suggested the role of OsJAZ13 in modulating the expression of JA/ethylene response-related genes to regulate growth and activate hypersensitive cell death
OsJAZ13	Os10g0391400	LOC_Os10g25230	jasmonate	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice
OsJAZ13	Os10g0391400	LOC_Os10g25230	ja	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	The expression of OsJAZ13 was mainly activated in vegetative tissues and transiently responded to JA and ethylene
OsJAZ13	Os10g0391400	LOC_Os10g25230	JA	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	The expression of OsJAZ13 was mainly activated in vegetative tissues and transiently responded to JA and ethylene
OsJAZ13	Os10g0391400	LOC_Os10g25230	ethylene	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	The expression of OsJAZ13 was mainly activated in vegetative tissues and transiently responded to JA and ethylene
OsJAZ13	Os10g0391400	LOC_Os10g25230	vegetative	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	The expression of OsJAZ13 was mainly activated in vegetative tissues and transiently responded to JA and ethylene
OsJAZ13	Os10g0391400	LOC_Os10g25230	cell death	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice
OsJAZ13	Os10g0391400	LOC_Os10g25230	cell death	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	Gene-expression analysis suggested the role of OsJAZ13 in modulating the expression of JA/ethylene response-related genes to regulate growth and activate hypersensitive cell death
OsJAZ13	Os10g0391400	LOC_Os10g25230	cell death	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	Taken together, these observations describe a novel regulatory mechanism in rice and provide the basis for elucidating the function of OsJAZ13 in signal transduction and cell death in plants
OsJAZ13	Os10g0391400	LOC_Os10g25230	ethylene response	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	Gene-expression analysis suggested the role of OsJAZ13 in modulating the expression of JA/ethylene response-related genes to regulate growth and activate hypersensitive cell death
OsJAZ13	Os10g0391400	LOC_Os10g25230	signal transduction	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice	Taken together, these observations describe a novel regulatory mechanism in rice and provide the basis for elucidating the function of OsJAZ13 in signal transduction and cell death in plants
OsJAZ6	Os03g0402800	LOC_Os03g28940	development	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	development	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	In vivo protein distribution analysis revealed that the OsJAZ6 content is efficiently regulated during spikelet development, and biochemical and genetic evidence showed that OsJAZ6 is more sensitive to JA-mediated degradation and mis-expression experiments, we further showed that the protein stability and levels of OsJAZ6 orchestrate the output of JA signaling during rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	spikelet	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	spikelet	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	In vivo protein distribution analysis revealed that the OsJAZ6 content is efficiently regulated during spikelet development, and biochemical and genetic evidence showed that OsJAZ6 is more sensitive to JA-mediated degradation and mis-expression experiments, we further showed that the protein stability and levels of OsJAZ6 orchestrate the output of JA signaling during rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	ja	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	ja	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	In vivo protein distribution analysis revealed that the OsJAZ6 content is efficiently regulated during spikelet development, and biochemical and genetic evidence showed that OsJAZ6 is more sensitive to JA-mediated degradation and mis-expression experiments, we further showed that the protein stability and levels of OsJAZ6 orchestrate the output of JA signaling during rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	JA	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	JA	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	In vivo protein distribution analysis revealed that the OsJAZ6 content is efficiently regulated during spikelet development, and biochemical and genetic evidence showed that OsJAZ6 is more sensitive to JA-mediated degradation and mis-expression experiments, we further showed that the protein stability and levels of OsJAZ6 orchestrate the output of JA signaling during rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	spikelet development	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	spikelet development	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	In vivo protein distribution analysis revealed that the OsJAZ6 content is efficiently regulated during spikelet development, and biochemical and genetic evidence showed that OsJAZ6 is more sensitive to JA-mediated degradation and mis-expression experiments, we further showed that the protein stability and levels of OsJAZ6 orchestrate the output of JA signaling during rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	JA signaling	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	Here, we found that OsJAZ6 interacts with OsJAZ1 depending on a single amino acid in the so-called ZIM domain of OsJAZ6 in rice JA signaling transduction and JA-regulated rice spikelet development
OsJAZ6	Os03g0402800	LOC_Os03g28940	JA signaling	Ectopic Expression of OsJAZ6, which Interacts with OsJAZ1, Alters JA Signaling and Spikelet Development in Rice.	In vivo protein distribution analysis revealed that the OsJAZ6 content is efficiently regulated during spikelet development, and biochemical and genetic evidence showed that OsJAZ6 is more sensitive to JA-mediated degradation and mis-expression experiments, we further showed that the protein stability and levels of OsJAZ6 orchestrate the output of JA signaling during rice spikelet development
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	blight	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	 ja 	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice	JA treatment caused OsJAZ8 degradation and this degradation was dependent on the 26S proteasome pathway
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	 ja 	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice	On the basis of these data, we conclude that JA plays an important role in resistance to Xoo, and OsJAZ8 acts as a repressor of JA signaling in rice
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	jasmonate	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice	Expression of OsJAZ8, a rice jasmonate ZIM-domain protein, was highly up-regulated by JA
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	jasmonate	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	bacterial blight	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	 xoo 	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice	Furthermore, OsJAZ8DeltaC negatively regulated the JA-induced resistance to Xoo in rice
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	defense	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice	A large-scale analysis using a rice DNA microarray revealed that overexpression of OsJAZ8DeltaC altered the expression of JA-responsive genes, including defense-related genes, in rice
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	seedlings	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	The result concluded that, more efficient activation of OsJAZ8 was accompanied by improved salt tolerance of the transgenic seedlings and demonstrates the impact of temporal signatures of jasmonate signalling for stress tolerance
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	salt	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	 In the case of transgenic rice, the steady-state levels of OsJAZ8 transcripts were more efficiently induced under salt stress compared to the wild type, this induction was more pronounced in the dominant-negative OsJAZ8 variant
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	salt	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	The result concluded that, more efficient activation of OsJAZ8 was accompanied by improved salt tolerance of the transgenic seedlings and demonstrates the impact of temporal signatures of jasmonate signalling for stress tolerance
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	tolerance	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	The result concluded that, more efficient activation of OsJAZ8 was accompanied by improved salt tolerance of the transgenic seedlings and demonstrates the impact of temporal signatures of jasmonate signalling for stress tolerance
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	jasmonate	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	 To modulate the time course of jasmonate signalling, either a full-length or a dominant negative C-terminally truncated version of OsJAZ8 driven by the ZOS3-11 promoter were expressed in a stable manner either in tobacco BY-2 cells, or in japonica rice
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	jasmonate	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	The result concluded that, more efficient activation of OsJAZ8 was accompanied by improved salt tolerance of the transgenic seedlings and demonstrates the impact of temporal signatures of jasmonate signalling for stress tolerance
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	salt tolerance	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	The result concluded that, more efficient activation of OsJAZ8 was accompanied by improved salt tolerance of the transgenic seedlings and demonstrates the impact of temporal signatures of jasmonate signalling for stress tolerance
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	salt stress	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	 In the case of transgenic rice, the steady-state levels of OsJAZ8 transcripts were more efficiently induced under salt stress compared to the wild type, this induction was more pronounced in the dominant-negative OsJAZ8 variant
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	stress	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	 In the case of transgenic rice, the steady-state levels of OsJAZ8 transcripts were more efficiently induced under salt stress compared to the wild type, this induction was more pronounced in the dominant-negative OsJAZ8 variant
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	stress	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	The result concluded that, more efficient activation of OsJAZ8 was accompanied by improved salt tolerance of the transgenic seedlings and demonstrates the impact of temporal signatures of jasmonate signalling for stress tolerance
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	stress tolerance	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	The result concluded that, more efficient activation of OsJAZ8 was accompanied by improved salt tolerance of the transgenic seedlings and demonstrates the impact of temporal signatures of jasmonate signalling for stress tolerance
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	brassinosteroid	GLUTAMATE RECEPTOR-like gene OsGLR3.4 is required for plant growth and systemic wound signaling in rice (Oryza sativa).	 Brassinosteroid treatment enhanced SWPs and OsJAZ8 expression in root-wounded plants, suggesting that BR signaling synergistically regulates the OsGLR3
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	BR	GLUTAMATE RECEPTOR-like gene OsGLR3.4 is required for plant growth and systemic wound signaling in rice (Oryza sativa).	 Brassinosteroid treatment enhanced SWPs and OsJAZ8 expression in root-wounded plants, suggesting that BR signaling synergistically regulates the OsGLR3
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	Brassinosteroid	GLUTAMATE RECEPTOR-like gene OsGLR3.4 is required for plant growth and systemic wound signaling in rice (Oryza sativa).	 Brassinosteroid treatment enhanced SWPs and OsJAZ8 expression in root-wounded plants, suggesting that BR signaling synergistically regulates the OsGLR3
OsJAZ8|OsTIFY10c	Os09g0439200	LOC_Os09g26780	BR signaling	GLUTAMATE RECEPTOR-like gene OsGLR3.4 is required for plant growth and systemic wound signaling in rice (Oryza sativa).	 Brassinosteroid treatment enhanced SWPs and OsJAZ8 expression in root-wounded plants, suggesting that BR signaling synergistically regulates the OsGLR3
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	salt	Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice	Over-expression of OsTIFY11a, one of the stress-inducible genes, resulted in significantly increased tolerance to salt and dehydration stresses
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	transcription factor	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 interacts with several bHLH transcription factors including OsbHLH062 via the Jas domain
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	jasmonate	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	salt	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	salt	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	Suppression of OsJAZ9 resulted in reduced salt tolerance
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	salt	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	These results together suggest that OsJAZ9 acts as a transcriptional regulator by forming a transcriptional regulation complex with OsNINJA and OsbHLH to fine tune the expression of JA-responsive genes involved in salt stress tolerance in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	salt tolerance	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	Suppression of OsJAZ9 resulted in reduced salt tolerance
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	salt stress	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	salt stress	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	These results together suggest that OsJAZ9 acts as a transcriptional regulator by forming a transcriptional regulation complex with OsNINJA and OsbHLH to fine tune the expression of JA-responsive genes involved in salt stress tolerance in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	tolerance	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	tolerance	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	Suppression of OsJAZ9 resulted in reduced salt tolerance
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	tolerance	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	These results together suggest that OsJAZ9 acts as a transcriptional regulator by forming a transcriptional regulation complex with OsNINJA and OsbHLH to fine tune the expression of JA-responsive genes involved in salt stress tolerance in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	These results together suggest that OsJAZ9 acts as a transcriptional regulator by forming a transcriptional regulation complex with OsNINJA and OsbHLH to fine tune the expression of JA-responsive genes involved in salt stress tolerance in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 interacts with OsCOI1a, a component of the SCF(COI1) E3 ubiquitin ligase complex, in a coronatine-dependent manner, suggesting that OsJAZ9 is involved in the regulation of JA signaling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	We found that OsJAZ9 can also interact with OsNINJA, a rice homolog of the Arabidopsis thaliana transcriptional repressor NINJA in JA signaling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 interacts with OsCOI1a, a component of the SCF(COI1) E3 ubiquitin ligase complex, in a coronatine-dependent manner, suggesting that OsJAZ9 is involved in the regulation of JA signaling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	We found that OsJAZ9 can also interact with OsNINJA, a rice homolog of the Arabidopsis thaliana transcriptional repressor NINJA in JA signaling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress tolerance	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress tolerance	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	These results together suggest that OsJAZ9 acts as a transcriptional regulator by forming a transcriptional regulation complex with OsNINJA and OsbHLH to fine tune the expression of JA-responsive genes involved in salt stress tolerance in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	Ubiquitin	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	OsJAZ9 interacts with OsCOI1a, a component of the SCF(COI1) E3 ubiquitin ligase complex, in a coronatine-dependent manner, suggesting that OsJAZ9 is involved in the regulation of JA signaling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ga	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Based on this broader interaction, we explored the function of OsJAZ9 in JA and GA responses by analyzing transcript levels of the JA-responsive gene OsbHLH148 and the GA-responsive gene OsPIL14 in OsJAZ9-overexpressing (OsJAZ9-Ox) and osjaz9 mutant plants
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ga	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	These observations indicated that OsJAZ9 regulates both JA and GA responses in rice, and this finding was supported by the opposite expression patterns of OsDREB1s, downstream targets of OsbHLH148 and OsPIL14, in the OsJAZ9-Ox and osjaz9 plants
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ga	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Together, these findings indicate that OsJAZ9 suppresses JA responses and promotes GA responses in rice, and the protein-protein interaction between OsJAZ9 and SLR1 is involved in the antagonistic interplay between JA and GA
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Based on this broader interaction, we explored the function of OsJAZ9 in JA and GA responses by analyzing transcript levels of the JA-responsive gene OsbHLH148 and the GA-responsive gene OsPIL14 in OsJAZ9-overexpressing (OsJAZ9-Ox) and osjaz9 mutant plants
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	These observations indicated that OsJAZ9 regulates both JA and GA responses in rice, and this finding was supported by the opposite expression patterns of OsDREB1s, downstream targets of OsbHLH148 and OsPIL14, in the OsJAZ9-Ox and osjaz9 plants
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Together, these findings indicate that OsJAZ9 suppresses JA responses and promotes GA responses in rice, and the protein-protein interaction between OsJAZ9 and SLR1 is involved in the antagonistic interplay between JA and GA
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	GA	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Based on this broader interaction, we explored the function of OsJAZ9 in JA and GA responses by analyzing transcript levels of the JA-responsive gene OsbHLH148 and the GA-responsive gene OsPIL14 in OsJAZ9-overexpressing (OsJAZ9-Ox) and osjaz9 mutant plants
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	GA	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	These observations indicated that OsJAZ9 regulates both JA and GA responses in rice, and this finding was supported by the opposite expression patterns of OsDREB1s, downstream targets of OsbHLH148 and OsPIL14, in the OsJAZ9-Ox and osjaz9 plants
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	GA	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Together, these findings indicate that OsJAZ9 suppresses JA responses and promotes GA responses in rice, and the protein-protein interaction between OsJAZ9 and SLR1 is involved in the antagonistic interplay between JA and GA
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Based on this broader interaction, we explored the function of OsJAZ9 in JA and GA responses by analyzing transcript levels of the JA-responsive gene OsbHLH148 and the GA-responsive gene OsPIL14 in OsJAZ9-overexpressing (OsJAZ9-Ox) and osjaz9 mutant plants
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	These observations indicated that OsJAZ9 regulates both JA and GA responses in rice, and this finding was supported by the opposite expression patterns of OsDREB1s, downstream targets of OsbHLH148 and OsPIL14, in the OsJAZ9-Ox and osjaz9 plants
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	Jasmonate Zim-Domain Protein 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Together, these findings indicate that OsJAZ9 suppresses JA responses and promotes GA responses in rice, and the protein-protein interaction between OsJAZ9 and SLR1 is involved in the antagonistic interplay between JA and GA
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	nitrogen	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	nitrogen	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	The transcription factor OsJAZ9 was the most pronouncedly induced component under low NH4+ in roots, and a significant increase in root growth, NH4+ absorption, amino acid, and sugar metabolism in response to resupplied NH4+ following nitrogen starvation was identified in JAZ9ox (OsJAZ9-overexpressed) and coi1 (OsCOI1-RNAi)
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	transcription factor	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	transcription factor	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	The transcription factor OsJAZ9 was the most pronouncedly induced component under low NH4+ in roots, and a significant increase in root growth, NH4+ absorption, amino acid, and sugar metabolism in response to resupplied NH4+ following nitrogen starvation was identified in JAZ9ox (OsJAZ9-overexpressed) and coi1 (OsCOI1-RNAi)
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	transcription factor	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	Our data provide comprehensive insight into the whole-plant transcriptomic response in terms of metabolic processes and signaling transduction to a low-NH4+ signal, and identify the transcription factor OsJAZ9 and its involvement in the regulation of carbon/nitrogen metabolism as central to the response to low NH4+
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	root	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	The transcription factor OsJAZ9 was the most pronouncedly induced component under low NH4+ in roots, and a significant increase in root growth, NH4+ absorption, amino acid, and sugar metabolism in response to resupplied NH4+ following nitrogen starvation was identified in JAZ9ox (OsJAZ9-overexpressed) and coi1 (OsCOI1-RNAi)
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	sugar	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	The transcription factor OsJAZ9 was the most pronouncedly induced component under low NH4+ in roots, and a significant increase in root growth, NH4+ absorption, amino acid, and sugar metabolism in response to resupplied NH4+ following nitrogen starvation was identified in JAZ9ox (OsJAZ9-overexpressed) and coi1 (OsCOI1-RNAi)
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	phytohormone	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	root growth	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	The transcription factor OsJAZ9 was the most pronouncedly induced component under low NH4+ in roots, and a significant increase in root growth, NH4+ absorption, amino acid, and sugar metabolism in response to resupplied NH4+ following nitrogen starvation was identified in JAZ9ox (OsJAZ9-overexpressed) and coi1 (OsCOI1-RNAi)
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	root	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Furthermore, we established that OsJAZ9 overexpression and knockdown result in K deficiency tolerance and sensitivity, respectively, by modulating various K transporters and root system architecture
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Enhanced bioactive JA (JA-Ile) accumulation in OsJAZ9 overexpressing rice helps plants tolerate K deficiency
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Here, we integrated molecular, physiological and morphological studies to analyze the role of OsJAZ9 in JA homeostasis and K deficiency responses
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	We raised OsJAZ9 over-expression, knockdown, transcriptional reporter, translational reporter and C-terminal deleted translational reporter lines in rice to establish the role of JA signaling in K ion homeostasis
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	JA profiling revealed significantly increased JA-Ile levels in OsJAZ9 OE lines under K deficiency
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Our data provide evidence on the crucial roles of OsJAZ9 for improving K deficiency tolerance in rice by altering JA levels and JA responses
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Enhanced bioactive JA (JA-Ile) accumulation in OsJAZ9 overexpressing rice helps plants tolerate K deficiency
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Here, we integrated molecular, physiological and morphological studies to analyze the role of OsJAZ9 in JA homeostasis and K deficiency responses
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	We raised OsJAZ9 over-expression, knockdown, transcriptional reporter, translational reporter and C-terminal deleted translational reporter lines in rice to establish the role of JA signaling in K ion homeostasis
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	JA profiling revealed significantly increased JA-Ile levels in OsJAZ9 OE lines under K deficiency
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Our data provide evidence on the crucial roles of OsJAZ9 for improving K deficiency tolerance in rice by altering JA levels and JA responses
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	tolerance	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Furthermore, we established that OsJAZ9 overexpression and knockdown result in K deficiency tolerance and sensitivity, respectively, by modulating various K transporters and root system architecture
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	tolerance	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Our data provide evidence on the crucial roles of OsJAZ9 for improving K deficiency tolerance in rice by altering JA levels and JA responses
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	potassium	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	architecture	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Furthermore, we established that OsJAZ9 overexpression and knockdown result in K deficiency tolerance and sensitivity, respectively, by modulating various K transporters and root system architecture
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	homeostasis	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Here, we integrated molecular, physiological and morphological studies to analyze the role of OsJAZ9 in JA homeostasis and K deficiency responses
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	homeostasis	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	We raised OsJAZ9 over-expression, knockdown, transcriptional reporter, translational reporter and C-terminal deleted translational reporter lines in rice to establish the role of JA signaling in K ion homeostasis
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	jasmonic	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	jasmonic acid	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	root system architecture	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	Furthermore, we established that OsJAZ9 overexpression and knockdown result in K deficiency tolerance and sensitivity, respectively, by modulating various K transporters and root system architecture
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA signaling	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice	We raised OsJAZ9 over-expression, knockdown, transcriptional reporter, translational reporter and C-terminal deleted translational reporter lines in rice to establish the role of JA signaling in K ion homeostasis
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	leaf	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	leaf	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Further, OsJAZ9 overexpression reduces leaf width and stomata density, leading to lower leaf transpiration rates than WT
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Here we report that OsJAZ9 plays a critical role in rice water-deficit stress tolerance via influencing JA and ABA signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ja	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Overexpression of OsJAZ9 led to the enhanced ABA and JA levels
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Here we report that OsJAZ9 plays a critical role in rice water-deficit stress tolerance via influencing JA and ABA signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	JA	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Overexpression of OsJAZ9 led to the enhanced ABA and JA levels
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	tolerance	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	tolerance	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Here we report that OsJAZ9 plays a critical role in rice water-deficit stress tolerance via influencing JA and ABA signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	tolerance	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	This reduced transpiration and higher K content as osmoticum improved the water-deficit stress tolerance in OsJAZ9 overexpression lines
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	potassium	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Our previous report demonstrated the role of OsJAZ9 in potassium homeostasis by modulating Jasmonic Acid (JA) signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ABA	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Here we report that OsJAZ9 plays a critical role in rice water-deficit stress tolerance via influencing JA and ABA signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ABA	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Overexpression of OsJAZ9 led to the enhanced ABA and JA levels
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Here we report that OsJAZ9 plays a critical role in rice water-deficit stress tolerance via influencing JA and ABA signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	This reduced transpiration and higher K content as osmoticum improved the water-deficit stress tolerance in OsJAZ9 overexpression lines
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	On the contrary, OsJAZ9 RNAi lines displayed enhanced sensitivity towards water-deficit stress
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	homeostasis	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Our previous report demonstrated the role of OsJAZ9 in potassium homeostasis by modulating Jasmonic Acid (JA) signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stomatal	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	jasmonic	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Our previous report demonstrated the role of OsJAZ9 in potassium homeostasis by modulating Jasmonic Acid (JA) signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	jasmonic acid	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Our previous report demonstrated the role of OsJAZ9 in potassium homeostasis by modulating Jasmonic Acid (JA) signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ABA	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Here we report that OsJAZ9 plays a critical role in rice water-deficit stress tolerance via influencing JA and ABA signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	ABA	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Overexpression of OsJAZ9 led to the enhanced ABA and JA levels
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stomata	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Further, OsJAZ9 overexpression reduces leaf width and stomata density, leading to lower leaf transpiration rates than WT
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress tolerance	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress tolerance	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	Here we report that OsJAZ9 plays a critical role in rice water-deficit stress tolerance via influencing JA and ABA signalling
OsJAZ9|OsTIFY11a	Os03g0180800	LOC_Os03g08310	stress tolerance	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice	This reduced transpiration and higher K content as osmoticum improved the water-deficit stress tolerance in OsJAZ9 overexpression lines
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	resistance	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	resistance	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	 Silencing OsJMJ715 enhanced BPH-elicited levels of ABA, JA, and JA-Ile as well as the amount of callose deposition in plants, which in turn increased the resistance of rice to BPH by reducing the feeding of BPH and the hatching rate of BPH eggs
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	ja	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	ja	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	 OsJMJ715 is a nucleus-localized E3 ligase whose mRNA levels were upregulated by the infestation of gravid BPH females, mechanical wounding, and treatment with JA or ABA
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	JA	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	JA	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	 OsJMJ715 is a nucleus-localized E3 ligase whose mRNA levels were upregulated by the infestation of gravid BPH females, mechanical wounding, and treatment with JA or ABA
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	ABA	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	ABA	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	 OsJMJ715 is a nucleus-localized E3 ligase whose mRNA levels were upregulated by the infestation of gravid BPH females, mechanical wounding, and treatment with JA or ABA
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	Ubiquitin	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	 ABA 	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	JA signaling	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	 ja 	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.
OsJMJ715	Os03g0430100|Os03g0430400	LOC_Os03g31594	 ja 	Silencing an E3 Ubiquitin Ligase Gene OsJMJ715 Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	 OsJMJ715 is a nucleus-localized E3 ligase whose mRNA levels were upregulated by the infestation of gravid BPH females, mechanical wounding, and treatment with JA or ABA
OsJMT1	Os05g0102000	LOC_Os05g01140	yield	Jasmonic acid carboxyl methyltransferase regulates development and herbivory-induced defense response in rice.	Plants in which OsJMT1 had been overexpressed (oe-JMT plants) showed reduced height and yield
OsJMT1	Os05g0102000	LOC_Os05g01140	brown planthopper	Jasmonic acid carboxyl methyltransferase regulates development and herbivory-induced defense response in rice.	OsJMT1 is up-regulated in response to infestation with the brown planthopper (BPH; Nilaparvata lugens)
OsJMT1	Os05g0102000	LOC_Os05g01140	height	Jasmonic acid carboxyl methyltransferase regulates development and herbivory-induced defense response in rice.	Plants in which OsJMT1 had been overexpressed (oe-JMT plants) showed reduced height and yield
OsJMT1	Os05g0102000	LOC_Os05g01140	ja	Jasmonic acid carboxyl methyltransferase regulates development and herbivory-induced defense response in rice.	After we cloned a rice JMT gene, OsJMT1, whose encoding protein was localized in the cytosol, we found that the recombinant OsJMT1 protein catalyzed JA to MeJA
OsJMT1	Os05g0102000	LOC_Os05g01140	JA	Jasmonic acid carboxyl methyltransferase regulates development and herbivory-induced defense response in rice.	After we cloned a rice JMT gene, OsJMT1, whose encoding protein was localized in the cytosol, we found that the recombinant OsJMT1 protein catalyzed JA to MeJA
OsJMT1	Os06g0314600	LOC_Os06g20920	ABA	Methyl jasmonate reduces grain yield by mediating stress signals to alter spikelet development in rice	Two genes, OsJMT1 and OsSDR (for short-chain alcohol dehydrogenase), are involved in MeJA and ABA biosynthesis, respectively, in rice (Oryza sativa)
OsJRL	None	None	salinity	OsJRL, a rice jacalin-related mannose-binding lectin gene, enhances Escherichia coli viability under high-salinity stress and improves salinity tolerance of rice.	Overexpression of OsJRL in rice also enhanced salinity tolerance and increased the expression levels of a number of stress-related genes, including three LEA (late embryogenesis abundant proteins) genes (OsLEA19a, OsLEA23 and OsLEA24), three Na(+) transporter genes (OsHKT1;3, OsHKT1;4 and OsHKT1;5) and two DREB genes (OsDREB1A and OsDREB2B)
OsJRL	None	None	tolerance	OsJRL, a rice jacalin-related mannose-binding lectin gene, enhances Escherichia coli viability under high-salinity stress and improves salinity tolerance of rice.	Overexpression of OsJRL in rice also enhanced salinity tolerance and increased the expression levels of a number of stress-related genes, including three LEA (late embryogenesis abundant proteins) genes (OsLEA19a, OsLEA23 and OsLEA24), three Na(+) transporter genes (OsHKT1;3, OsHKT1;4 and OsHKT1;5) and two DREB genes (OsDREB1A and OsDREB2B)
OsJRL	None	None	cytoplasm	OsJRL, a rice jacalin-related mannose-binding lectin gene, enhances Escherichia coli viability under high-salinity stress and improves salinity tolerance of rice.	OsJRL was localized in the nucleus and cytoplasm
OsJRL	None	None	stress	OsJRL, a rice jacalin-related mannose-binding lectin gene, enhances Escherichia coli viability under high-salinity stress and improves salinity tolerance of rice.	Based on these results, we suggest that OsJRL plays an important role in cell protection and stress signal transduction
OsJRL	None	None	transporter	OsJRL, a rice jacalin-related mannose-binding lectin gene, enhances Escherichia coli viability under high-salinity stress and improves salinity tolerance of rice.	Overexpression of OsJRL in rice also enhanced salinity tolerance and increased the expression levels of a number of stress-related genes, including three LEA (late embryogenesis abundant proteins) genes (OsLEA19a, OsLEA23 and OsLEA24), three Na(+) transporter genes (OsHKT1;3, OsHKT1;4 and OsHKT1;5) and two DREB genes (OsDREB1A and OsDREB2B)
OsJRL	None	None	nucleus	OsJRL, a rice jacalin-related mannose-binding lectin gene, enhances Escherichia coli viability under high-salinity stress and improves salinity tolerance of rice.	OsJRL was localized in the nucleus and cytoplasm
OsJRL	None	None	abscisic acid	OsJRL, a rice jacalin-related mannose-binding lectin gene, enhances Escherichia coli viability under high-salinity stress and improves salinity tolerance of rice.	Real time PCR analyses revealed that OsJRL expression showed tissue specificity in rice and was upregulated under diverse stresses, namely salt, drought, cold, heat and abscisic acid treatments
OsJRL40	Os04g0123600	LOC_Os04g03360	transcription factor	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 RNA-seq analysis revealed that OsJRL40 regulates salt tolerance in rice by controlling the expression of genes encoding Na(+)/K(+) transporters, salt-responsive transcription factors, and other salt response-related proteins
OsJRL40	Os04g0123600	LOC_Os04g03360	growth	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth
OsJRL40	Os04g0123600	LOC_Os04g03360	stress	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth
OsJRL40	Os04g0123600	LOC_Os04g03360	stress	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 Further molecular analyses showed that OsJRL40 enhances antioxidant enzyme activities and regulates Na(+)-K(+) homeostasis under salt stress
OsJRL40	Os04g0123600	LOC_Os04g03360	seedling	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth
OsJRL40	Os04g0123600	LOC_Os04g03360	salt	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth
OsJRL40	Os04g0123600	LOC_Os04g03360	salt	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 Further molecular analyses showed that OsJRL40 enhances antioxidant enzyme activities and regulates Na(+)-K(+) homeostasis under salt stress
OsJRL40	Os04g0123600	LOC_Os04g03360	salt	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 RNA-seq analysis revealed that OsJRL40 regulates salt tolerance in rice by controlling the expression of genes encoding Na(+)/K(+) transporters, salt-responsive transcription factors, and other salt response-related proteins
OsJRL40	Os04g0123600	LOC_Os04g03360	tolerance	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth
OsJRL40	Os04g0123600	LOC_Os04g03360	tolerance	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 RNA-seq analysis revealed that OsJRL40 regulates salt tolerance in rice by controlling the expression of genes encoding Na(+)/K(+) transporters, salt-responsive transcription factors, and other salt response-related proteins
OsJRL40	Os04g0123600	LOC_Os04g03360	salt tolerance	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth
OsJRL40	Os04g0123600	LOC_Os04g03360	salt tolerance	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 RNA-seq analysis revealed that OsJRL40 regulates salt tolerance in rice by controlling the expression of genes encoding Na(+)/K(+) transporters, salt-responsive transcription factors, and other salt response-related proteins
OsJRL40	Os04g0123600	LOC_Os04g03360	salt stress	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth
OsJRL40	Os04g0123600	LOC_Os04g03360	salt stress	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 Further molecular analyses showed that OsJRL40 enhances antioxidant enzyme activities and regulates Na(+)-K(+) homeostasis under salt stress
OsJRL40	Os04g0123600	LOC_Os04g03360	cytoplasm	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 β-glucuronidase (GUS) reporter assays indicated that OsJRL40 is expressed to higher levels in roots and internodes than in other tissues, and subcellular localization analysis revealed that the OsJRL40 protein localizes to the cytoplasm
OsJRL40	Os04g0123600	LOC_Os04g03360	reproductive	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth
OsJRL40	Os04g0123600	LOC_Os04g03360	homeostasis	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 Further molecular analyses showed that OsJRL40 enhances antioxidant enzyme activities and regulates Na(+)-K(+) homeostasis under salt stress
OsJRL40	Os04g0123600	LOC_Os04g03360	reproductive growth	OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	 The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth
OSK1	Os11g0456300	LOC_Os11g26910	jasmonate	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.	Intriguingly, OSK1 phosphorylation at Ser(53) by XopC2 exclusively increases the binding affinity of OSK1 to the jasmonate receptor OsCOI1b, and specifically enhances the ubiquitination and degradation of JAZ transcription repressors and plant disease susceptibility through inhibiting stomatal immunity
OSK1	Os11g0456300	LOC_Os11g26910	disease	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.	Intriguingly, OSK1 phosphorylation at Ser(53) by XopC2 exclusively increases the binding affinity of OSK1 to the jasmonate receptor OsCOI1b, and specifically enhances the ubiquitination and degradation of JAZ transcription repressors and plant disease susceptibility through inhibiting stomatal immunity
OSK1	Os11g0456300	LOC_Os11g26910	immunity	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.
OSK1	Os11g0456300	LOC_Os11g26910	immunity	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.	Intriguingly, OSK1 phosphorylation at Ser(53) by XopC2 exclusively increases the binding affinity of OSK1 to the jasmonate receptor OsCOI1b, and specifically enhances the ubiquitination and degradation of JAZ transcription repressors and plant disease susceptibility through inhibiting stomatal immunity
OSK1	Os11g0456300	LOC_Os11g26910	stomatal	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.
OSK1	Os11g0456300	LOC_Os11g26910	stomatal	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.	Intriguingly, OSK1 phosphorylation at Ser(53) by XopC2 exclusively increases the binding affinity of OSK1 to the jasmonate receptor OsCOI1b, and specifically enhances the ubiquitination and degradation of JAZ transcription repressors and plant disease susceptibility through inhibiting stomatal immunity
OSK1	Os11g0456300	LOC_Os11g26910	Kinase	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.
OSK1	Os11g0456300	LOC_Os11g26910	kinase	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.
OSK20	Os09g0539500	LOC_Os09g36830	root	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice	Among them, OSK1 and OSK20 exhibited higher expression levels in roots.
OsKANADI1|OsKANADI2	Os02g0696900	LOC_Os02g46940	meristem	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OsKANADI1|OsKANADI2	Os02g0696900	LOC_Os02g46940	transcription factor	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OsKANADI4	Os03g0766500	LOC_Os03g55760	meristem	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OsKANADI4	Os03g0766500	LOC_Os03g55760	transcription factor	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Direct regulation of other transcription factor genes like OsHB4 (a class III homeodomain Leu zipper member), OsBLH1 (a BEL1-like homeodomain member), OsKANADI2, OsKANADI4, and OsETTIN2 show its role in meristem maintenance, determinacy, and lateral organ development
OsKASI	Os06g0196600	LOC_Os06g09630	root	OsKASI, a β-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	The involvement of OsKASI in FA synthesis is found to play a critical role in root development of rice
OsKASI	Os06g0196600	LOC_Os06g09630	root	OsKASI, a β-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	Our results demonstrate that involvement of OsKASI in FA synthesis is required for root development in rice
OsKASI	Os06g0196600	LOC_Os06g09630	map-based cloning	OsKASI, a β-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	Map-based cloning revealed that the mutation occurred in a putative 3-oxoacyl-synthase, an ortholog of β-ketoacyl-[acyl carrier protein] synthase I (KASI) in Arabidopsis, thus designated as OsKASI
OsKASI	Os06g0196600	LOC_Os06g09630	fertility	OsKASI, a β-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	In addition, OsKASI deficiency resulted in reduced fertility and a remarkable change in fatty acid (FA) composition and contents in roots and seeds
OsKASI	Os06g0196600	LOC_Os06g09630	development	OsKASI, a β-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	The involvement of OsKASI in FA synthesis is found to play a critical role in root development of rice
OsKASI	Os06g0196600	LOC_Os06g09630	development	OsKASI, a β-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	Our results demonstrate that involvement of OsKASI in FA synthesis is required for root development in rice
OsKASI	Os06g0196600	LOC_Os06g09630	root development	OsKASI, a β-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	The involvement of OsKASI in FA synthesis is found to play a critical role in root development of rice
OsKASI	Os06g0196600	LOC_Os06g09630	root development	OsKASI, a β-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	Our results demonstrate that involvement of OsKASI in FA synthesis is required for root development in rice
OsKASI	Os06g0196600	LOC_Os06g09630	R protein	OsKASI, a β-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	Map-based cloning revealed that the mutation occurred in a putative 3-oxoacyl-synthase, an ortholog of β-ketoacyl-[acyl carrier protein] synthase I (KASI) in Arabidopsis, thus designated as OsKASI
OsKAT1	Os01g0756700	LOC_Os01g55200	potassium	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells
OsKAT1	Os01g0756700	LOC_Os01g55200	growth	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	By the expression of OsKAT1, the K(+) contents of salt-stressed G19 cells increased during the exponential growth phase
OsKAT1	Os01g0756700	LOC_Os01g55200	salt stress	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	These results suggest that OsKAT1 is involved in salt tolerance of rice in cooperation with other K(+) channels by participating in maintenance of cytosolic cation homeostasis during salt stress and thus protects cells from Na(+)
OsKAT1	Os01g0756700	LOC_Os01g55200	homeostasis	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	These results suggest that OsKAT1 is involved in salt tolerance of rice in cooperation with other K(+) channels by participating in maintenance of cytosolic cation homeostasis during salt stress and thus protects cells from Na(+)
OsKAT1	Os01g0756700	LOC_Os01g55200	salinity stress	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells
OsKAT1	Os01g0756700	LOC_Os01g55200	salt	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	We found that expression of a cDNA clone, encoding the rice homolog of Shaker family K(+) channel KAT1 (OsKAT1), suppressed the salt-sensitive phenotype of yeast strain G19 (Deltaena1-4), which lacks a major component of Na(+) efflux
OsKAT1	Os01g0756700	LOC_Os01g55200	salt	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	By the expression of OsKAT1, the K(+) contents of salt-stressed G19 cells increased during the exponential growth phase
OsKAT1	Os01g0756700	LOC_Os01g55200	salt	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	Rice cells overexpressing OsKAT1 also showed enhanced salt tolerance and increased cellular K(+) content
OsKAT1	Os01g0756700	LOC_Os01g55200	salt	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	These functions of OsKAT1 are likely to be common among Shaker K(+) channels because OsAKT1 and Arabidopsis (Arabidopsis thaliana) KAT1 were able to complement the salt-sensitive phenotype of G19 as well as OsKAT1
OsKAT1	Os01g0756700	LOC_Os01g55200	salt	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	These results suggest that OsKAT1 is involved in salt tolerance of rice in cooperation with other K(+) channels by participating in maintenance of cytosolic cation homeostasis during salt stress and thus protects cells from Na(+)
OsKAT1	Os01g0756700	LOC_Os01g55200	salinity	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells
OsKAT1	Os01g0756700	LOC_Os01g55200	salt tolerance	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	Rice cells overexpressing OsKAT1 also showed enhanced salt tolerance and increased cellular K(+) content
OsKAT1	Os01g0756700	LOC_Os01g55200	salt tolerance	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells	These results suggest that OsKAT1 is involved in salt tolerance of rice in cooperation with other K(+) channels by participating in maintenance of cytosolic cation homeostasis during salt stress and thus protects cells from Na(+)
OsKAT1	Os01g0756700	LOC_Os01g55200	root	Genome-Wide Analysis of Potassium Channel Genes in Rice: Expression of the OsAKT and OsKAT Genes under Salt Stress	In addition, the real-time PCR results revealed that OsAKTs and OsKATs are induced by salt stress in root and shoot tissues of rice cultivars, and OsKAT1 was identified as a key gene involved in the rice response to salt stress
OsKAT1	Os01g0756700	LOC_Os01g55200	shoot	Genome-Wide Analysis of Potassium Channel Genes in Rice: Expression of the OsAKT and OsKAT Genes under Salt Stress	In addition, the real-time PCR results revealed that OsAKTs and OsKATs are induced by salt stress in root and shoot tissues of rice cultivars, and OsKAT1 was identified as a key gene involved in the rice response to salt stress
OsKAT1	Os01g0756700	LOC_Os01g55200	salt	Genome-Wide Analysis of Potassium Channel Genes in Rice: Expression of the OsAKT and OsKAT Genes under Salt Stress	In addition, the real-time PCR results revealed that OsAKTs and OsKATs are induced by salt stress in root and shoot tissues of rice cultivars, and OsKAT1 was identified as a key gene involved in the rice response to salt stress
OsKAT1	Os01g0756700	LOC_Os01g55200	salt stress	Genome-Wide Analysis of Potassium Channel Genes in Rice: Expression of the OsAKT and OsKAT Genes under Salt Stress	In addition, the real-time PCR results revealed that OsAKTs and OsKATs are induced by salt stress in root and shoot tissues of rice cultivars, and OsKAT1 was identified as a key gene involved in the rice response to salt stress
OsKAT1	Os01g0756700	LOC_Os01g55200	stress	Genome-Wide Analysis of Potassium Channel Genes in Rice: Expression of the OsAKT and OsKAT Genes under Salt Stress	In addition, the real-time PCR results revealed that OsAKTs and OsKATs are induced by salt stress in root and shoot tissues of rice cultivars, and OsKAT1 was identified as a key gene involved in the rice response to salt stress
OsKAT2	Os01g0210700	LOC_Os01g11250	potassium	Unique features of two potassium channels, OsKAT2 and OsKAT3, expressed in rice guard cells	Here we report the characterization of two inward rectifying shaker-like potassium channels, OsKAT2 and OsKAT3, expressed in guard cell of rice plants
OsKAT2	Os01g0210700	LOC_Os01g11250	potassium	Unique features of two potassium channels, OsKAT2 and OsKAT3, expressed in rice guard cells	While OsKAT2 showed typical potassium channel activity, like that of Arabidopsis KAT1, OsKAT3 did not despite high sequence similarity between the two channel proteins
OsKAT2	Os01g0210700	LOC_Os01g11250	potassium	Unique features of two potassium channels, OsKAT2 and OsKAT3, expressed in rice guard cells	Interestingly, the two potassium channels physically interacted with each other and such interaction negatively regulated the OsKAT2 channel activity in CHO cell system
OsKAT2	Os01g0210700	LOC_Os01g11250	potassium	Unique features of two potassium channels, OsKAT2 and OsKAT3, expressed in rice guard cells	Unique features of two potassium channels, OsKAT2 and OsKAT3, expressed in rice guard cells
OsKAT2	Os01g0210700	LOC_Os01g11250	growth	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	Interestingly, overexpression of OsKAT2(T235R) did not cause serious defects in growth or yield in rice, suggesting that OsKAT2 is a potential target for engineering plants with improved drought tolerance without yield penalty
OsKAT2	Os01g0210700	LOC_Os01g11250	drought	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.
OsKAT2	Os01g0210700	LOC_Os01g11250	drought	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	Interestingly, overexpression of OsKAT2(T235R) did not cause serious defects in growth or yield in rice, suggesting that OsKAT2 is a potential target for engineering plants with improved drought tolerance without yield penalty
OsKAT2	Os01g0210700	LOC_Os01g11250	tolerance	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.
OsKAT2	Os01g0210700	LOC_Os01g11250	tolerance	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	Interestingly, overexpression of OsKAT2(T235R) did not cause serious defects in growth or yield in rice, suggesting that OsKAT2 is a potential target for engineering plants with improved drought tolerance without yield penalty
OsKAT2	Os01g0210700	LOC_Os01g11250	potassium	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	Our results indicate that OsKAT2 is an inward- rectifying shaker-like potassium channel that mainly functions in stomatal opening
OsKAT2	Os01g0210700	LOC_Os01g11250	yield	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.
OsKAT2	Os01g0210700	LOC_Os01g11250	yield	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	Interestingly, overexpression of OsKAT2(T235R) did not cause serious defects in growth or yield in rice, suggesting that OsKAT2 is a potential target for engineering plants with improved drought tolerance without yield penalty
OsKAT2	Os01g0210700	LOC_Os01g11250	drought tolerance	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.
OsKAT2	Os01g0210700	LOC_Os01g11250	drought tolerance	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	Interestingly, overexpression of OsKAT2(T235R) did not cause serious defects in growth or yield in rice, suggesting that OsKAT2 is a potential target for engineering plants with improved drought tolerance without yield penalty
OsKAT2	Os01g0210700	LOC_Os01g11250	stomatal	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.
OsKAT2	Os01g0210700	LOC_Os01g11250	stomatal	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	Here, we investigated the functions of OsKAT2 in stomatal regulation using three dominant negative mutant proteins, OsKAT2(T235R), OsKAT2(T285A) and OsKAT2(T285D), which are altered in amino acids in the channel pore and at a phosphorylation site
OsKAT2	Os01g0210700	LOC_Os01g11250	stomatal	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves Drought Tolerance without Yield Penalty in Rice.	Our results indicate that OsKAT2 is an inward- rectifying shaker-like potassium channel that mainly functions in stomatal opening
OsKAT2	Os01g0210700	LOC_Os01g11250	salinity	Genome-Wide Analysis of Potassium Channel Genes in Rice: Expression of the OsAKT and OsKAT Genes under Salt Stress	In the present study, we found that the repression of OsAKTs, OsKAT2, and OsKAT2 in roots was related to salinity tolerance in rice
OsKAT2	Os01g0210700	LOC_Os01g11250	tolerance	Genome-Wide Analysis of Potassium Channel Genes in Rice: Expression of the OsAKT and OsKAT Genes under Salt Stress	In the present study, we found that the repression of OsAKTs, OsKAT2, and OsKAT2 in roots was related to salinity tolerance in rice
OsKAT3	Os02g0245800	LOC_Os02g14840	potassium	Unique features of two potassium channels, OsKAT2 and OsKAT3, expressed in rice guard cells	Here we report the characterization of two inward rectifying shaker-like potassium channels, OsKAT2 and OsKAT3, expressed in guard cell of rice plants
OsKAT3	Os02g0245800	LOC_Os02g14840	potassium	Unique features of two potassium channels, OsKAT2 and OsKAT3, expressed in rice guard cells	While OsKAT2 showed typical potassium channel activity, like that of Arabidopsis KAT1, OsKAT3 did not despite high sequence similarity between the two channel proteins
OsKAT3	Os02g0245800	LOC_Os02g14840	potassium	Unique features of two potassium channels, OsKAT2 and OsKAT3, expressed in rice guard cells	Unique features of two potassium channels, OsKAT2 and OsKAT3, expressed in rice guard cells
OsKCH1	Os12g0547500	LOC_Os12g36100	architecture	The non-processive rice kinesin-14 OsKCH1 transports actin filaments along microtubules with two distinct velocities.	Together, our results imply a central role of OsKCH1 in the polar orientation of actin filaments along microtubules, and thus a contribution to the organization of the cytoskeletal architecture
OsKEAP1	Os01g0162500	LOC_Os01g06890	seedlings	Identification, Characterization, and Mutational Analysis of a Probable KEAP1 Ortholog in Rice ( Oryza sativa L.)	The downregulation of OsKEAP1 increased the levels of H2O2, malondialdehyde, and proline while significantly decreasing the expression of two catalase genes in seedlings grown under normal and salt-stressed conditions
OsKEAP1	Os01g0162500	LOC_Os01g06890	growth	Identification, Characterization, and Mutational Analysis of a Probable KEAP1 Ortholog in Rice ( Oryza sativa L.)	The oskeap1 mutations greatly impaired plant growth and development, resulting in significant declines in a majority of agronomic and yield-related traits, i
OsKEAP1	Os01g0162500	LOC_Os01g06890	development	Identification, Characterization, and Mutational Analysis of a Probable KEAP1 Ortholog in Rice ( Oryza sativa L.)	In silico analysis showed that OsKEAP1 has a Kelch-repeat domain which is identical to those of animals and a plant-specific development and cell death (DCD) domain in place of the broad-complex, tramtrack, bric-a-brac (BTB) domain found in animals
OsKEAP1	Os01g0162500	LOC_Os01g06890	cell death	Identification, Characterization, and Mutational Analysis of a Probable KEAP1 Ortholog in Rice ( Oryza sativa L.)	In silico analysis showed that OsKEAP1 has a Kelch-repeat domain which is identical to those of animals and a plant-specific development and cell death (DCD) domain in place of the broad-complex, tramtrack, bric-a-brac (BTB) domain found in animals
OsKEAP1	Os01g0162500	LOC_Os01g06890	cytoplasm	Identification, Characterization, and Mutational Analysis of a Probable KEAP1 Ortholog in Rice ( Oryza sativa L.)	OsKEAP1 was proven to be localized to both the cytoplasm and nucleus, in contrast to the exclusive cytoplasm localization of animal KEAP1
OsKEAP1	Os01g0162500	LOC_Os01g06890	plant growth	Identification, Characterization, and Mutational Analysis of a Probable KEAP1 Ortholog in Rice ( Oryza sativa L.)	The oskeap1 mutations greatly impaired plant growth and development, resulting in significant declines in a majority of agronomic and yield-related traits, i
OsKMD2	Os06g0594400	LOC_Os06g39370	growth	The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling.	Ectopic overexpression of OsKMD2 in Arabidopsis results in decreased cytokinin sensitivity based on a hypocotyl growth response assay, the decrease in sensitivity correlating with a decrease in the levels of the transcriptional regulator AtARR12
OsKMD2	Os06g0594400	LOC_Os06g39370	cytokinin	The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling.	Ectopic overexpression of OsKMD2 in Arabidopsis results in decreased cytokinin sensitivity based on a hypocotyl growth response assay, the decrease in sensitivity correlating with a decrease in the levels of the transcriptional regulator AtARR12
OsKMD2	Os06g0594400	LOC_Os06g39370	transcriptional regulator	The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling.	Ectopic overexpression of OsKMD2 in Arabidopsis results in decreased cytokinin sensitivity based on a hypocotyl growth response assay, the decrease in sensitivity correlating with a decrease in the levels of the transcriptional regulator AtARR12
OsKNOLLE	Os03g0736500	LOC_Os03g52650	abiotic stress	Heterologous expression of a rice syntaxin-related protein KNOLLE gene (<I>OsKNOLLE</I>) in yeast and its functional analysis in the role of abiotic stress	The transformants with OsKNOLLE showed better survival abilities than the transformants with the empty vectors based on their phenotypes in responses to different abiotic stresses such as salt, Cu2+, H2O2, Cd2+, and Hg2+
OsKNOLLE	Os03g0736500	LOC_Os03g52650	abiotic stress	Heterologous expression of a rice syntaxin-related protein KNOLLE gene (<I>OsKNOLLE</I>) in yeast and its functional analysis in the role of abiotic stress	These data suggests that OsKNOLLE plays a crucial role in re-sponses to abiotic stresses
OsKNOLLE	Os03g0736500	LOC_Os03g52650	abiotic stress	Heterologous expression of a rice syntaxin-related protein KNOLLE gene (<I>OsKNOLLE</I>) in yeast and its functional analysis in the role of abiotic stress	This experimental system sets up a method for studying functions of the OsKNOLLE gene in the future and clarifies the relationship between OsKNOLLE and abiotic stresses
OsKNOLLE	Os03g0736500	LOC_Os03g52650	abiotic stress	Heterologous expression of a rice syntaxin-related protein KNOLLE gene (<I>OsKNOLLE</I>) in yeast and its functional analysis in the role of abiotic stress	Heterologous expression of a rice syntaxin-related protein KNOLLE gene (<I>OsKNOLLE</I>) in yeast and its functional analysis in the role of abiotic stress
OsKNOLLE	Os03g0736500	LOC_Os03g52650	salt	Heterologous expression of a rice syntaxin-related protein KNOLLE gene (<I>OsKNOLLE</I>) in yeast and its functional analysis in the role of abiotic stress	The transformants with OsKNOLLE showed better survival abilities than the transformants with the empty vectors based on their phenotypes in responses to different abiotic stresses such as salt, Cu2+, H2O2, Cd2+, and Hg2+
OsKOS1|OsKOL4|CYP701A8|qST-6.2	Os06g0569500	LOC_Os06g37300	dwarf	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Introduction of OsKOL4 into d35Tan-Ginbozu did not rescue its dwarf phenotype, indicating that OsKOL4 is not involved in GA biosynthesis
OsKOS1|OsKOL4|CYP701A8|qST-6.2	Os06g0569500	LOC_Os06g37300	 ga 	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase	Introduction of OsKOL4 into d35Tan-Ginbozu did not rescue its dwarf phenotype, indicating that OsKOL4 is not involved in GA biosynthesis
OsKOS1|OsKOL4|CYP701A8|qST-6.2	Os06g0569500	LOC_Os06g37300	 ga 	CYP701A8: a rice ent-kaurene oxidase paralog diverted to more specialized diterpenoid metabolism	In particular, under conditions where OsKO2 catalyzes the expected conversion of ent-kaurene to ent-kaurenoic acid required for GA biosynthesis, OsKOL4 instead efficiently reacts with ent-sandaracopimaradiene and ent-cassadiene to produce the corresponding C3alpha-hydroxylated diterpenoids
OsKOS1|OsKOL4|CYP701A8|qST-6.2	Os06g0569500	LOC_Os06g37300	 ga 	CYP701A8: a rice ent-kaurene oxidase paralog diverted to more specialized diterpenoid metabolism	Thus, it appears that OsKOL4 plays a role in the more specialized diterpenoid metabolism of rice, and our results provide evidence for divergence of a KO/CYP701 family member from GA biosynthesis
OsKOS1|OsKOL4|CYP701A8|qST-6.2	Os06g0569500	LOC_Os06g37300	gibberellin	Assessment of efficacy of mutagenesis of gamma-irradiation in plant height and days to maturity through expression analysis in rice	 Gibberellin responsiveness study and quantitative real-time PCR showed a faulty gibberellin pathway and epistatic control between the genes such as OsKOL4 and OsBRD2 causing semi-dwarfism in a mutant
OsKOS1|OsKOL4|CYP701A8|qST-6.2	Os06g0569500	LOC_Os06g37300	Gibberellin	Assessment of efficacy of mutagenesis of gamma-irradiation in plant height and days to maturity through expression analysis in rice	 Gibberellin responsiveness study and quantitative real-time PCR showed a faulty gibberellin pathway and epistatic control between the genes such as OsKOL4 and OsBRD2 causing semi-dwarfism in a mutant
OsKOS4|OsKO1	Os06g0569900	LOC_Os06g37330	gibberellin	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	The expression levels of gibberellin (GA) biosynthetic genes including OsCPS1, OsKS1, OsKO1, OsKAO, OsGA20ox2/SD1 and OsGA2ox3 were significantly increased in d62 mutant
OsKOS4|OsKO1	Os06g0569900	LOC_Os06g37330	seedling	Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice.	Further analyses proved that OsKO1 could catalyze the reaction from ent-kaurene into ent-kaurenoic acid in GA biosynthesis mainly at seed germination and seedling stages, and the mutations decrease its activity to catalyze the step from ent-kaurenol to ent-kaurenoic acid in this reaction
OsKOS4|OsKO1	Os06g0569900	LOC_Os06g37330	seed	Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice.	Further analyses proved that OsKO1 could catalyze the reaction from ent-kaurene into ent-kaurenoic acid in GA biosynthesis mainly at seed germination and seedling stages, and the mutations decrease its activity to catalyze the step from ent-kaurenol to ent-kaurenoic acid in this reaction
OsKOS4|OsKO1	Os06g0569900	LOC_Os06g37330	seed germination	Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice.	Further analyses proved that OsKO1 could catalyze the reaction from ent-kaurene into ent-kaurenoic acid in GA biosynthesis mainly at seed germination and seedling stages, and the mutations decrease its activity to catalyze the step from ent-kaurenol to ent-kaurenoic acid in this reaction
OsKOS4|OsKO1	Os06g0569900	LOC_Os06g37330	ga	Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice.	Genetic complementary analysis and enzyme assay verified that the mutations in OsKO1 gene block the biosynthesis of GA and result in the defect phenotypes
OsKOS4|OsKO1	Os06g0569900	LOC_Os06g37330	ga	Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice.	Further analyses proved that OsKO1 could catalyze the reaction from ent-kaurene into ent-kaurenoic acid in GA biosynthesis mainly at seed germination and seedling stages, and the mutations decrease its activity to catalyze the step from ent-kaurenol to ent-kaurenoic acid in this reaction
OsKOS4|OsKO1	Os06g0569900	LOC_Os06g37330	GA	Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice.	Genetic complementary analysis and enzyme assay verified that the mutations in OsKO1 gene block the biosynthesis of GA and result in the defect phenotypes
OsKOS4|OsKO1	Os06g0569900	LOC_Os06g37330	GA	Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice.	Further analyses proved that OsKO1 could catalyze the reaction from ent-kaurene into ent-kaurenoic acid in GA biosynthesis mainly at seed germination and seedling stages, and the mutations decrease its activity to catalyze the step from ent-kaurenol to ent-kaurenoic acid in this reaction
OsKOS4|OsKO1	Os06g0569900	LOC_Os06g37330	GA biosynthesis	Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice.	Further analyses proved that OsKO1 could catalyze the reaction from ent-kaurene into ent-kaurenoic acid in GA biosynthesis mainly at seed germination and seedling stages, and the mutations decrease its activity to catalyze the step from ent-kaurenol to ent-kaurenoic acid in this reaction
OsKRN2	Os04g0568400	LOC_Os04g48010	grain	Convergent selection of a WD40 protein that enhances grain yield in maize and rice.	 Knockout of KRN2 in maize or OsKRN2 in rice increased grain yield by ~10% and ~8%, respectively, with no apparent trade-offs in other agronomic traits
OsKRN2	Os04g0568400	LOC_Os04g48010	grain yield	Convergent selection of a WD40 protein that enhances grain yield in maize and rice.	 Knockout of KRN2 in maize or OsKRN2 in rice increased grain yield by ~10% and ~8%, respectively, with no apparent trade-offs in other agronomic traits
OsKRN2	Os04g0568400	LOC_Os04g48010	yield	Convergent selection of a WD40 protein that enhances grain yield in maize and rice.	 Knockout of KRN2 in maize or OsKRN2 in rice increased grain yield by ~10% and ~8%, respectively, with no apparent trade-offs in other agronomic traits
OsKS1	Os04g0611800	LOC_Os04g52230	seed	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway	The osks1 mutant seedlings were responsive to exogenous gibberellin (GA3)
OsKS1	Os04g0611800	LOC_Os04g52230	seed	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway	3 kb were detected in leaves and stem of wild-type plants, but not in germinating seeds or roots, suggesting that OsKS1 is not involved in germination or root growth
OsKS1	Os04g0611800	LOC_Os04g52230	ga	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	Expression of OsKS1, one of the genes encoding for GA biosynthetic enzymes, was suppressed in the antisense transgenic lines
OsKS1	Os04g0611800	LOC_Os04g52230	gibberellin	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	The expression levels of gibberellin (GA) biosynthetic genes including OsCPS1, OsKS1, OsKO1, OsKAO, OsGA20ox2/SD1 and OsGA2ox3 were significantly increased in d62 mutant
OsKS1	Os04g0611800	LOC_Os04g52230	growth	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway	3 kb were detected in leaves and stem of wild-type plants, but not in germinating seeds or roots, suggesting that OsKS1 is not involved in germination or root growth
OsKS1	Os04g0611800	LOC_Os04g52230	stem	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway	3 kb were detected in leaves and stem of wild-type plants, but not in germinating seeds or roots, suggesting that OsKS1 is not involved in germination or root growth
OsKS1	Os04g0611800	LOC_Os04g52230	gibberellin	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway	The osks1 mutant seedlings were responsive to exogenous gibberellin (GA3)
OsKS1	Os04g0611800	LOC_Os04g52230	seedling	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway	The osks1 mutant seedlings were responsive to exogenous gibberellin (GA3)
OsKS1	Os04g0611800	LOC_Os04g52230	root	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway	3 kb were detected in leaves and stem of wild-type plants, but not in germinating seeds or roots, suggesting that OsKS1 is not involved in germination or root growth
OsKS1	Os04g0611800	LOC_Os04g52230	dwarf	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway	As mutations in three recently reported rice GA-responsive dwarf mutant alleles and the dwarf mutation identified in this study mapped to the same locus, we designate the corresponding gene OsKS1
OsKTN80a	Os10g0494800	LOC_Os10g35200	cell elongation	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	We prove that OsKTN80a, possibly associated with OsKTN60, is involved in root growth via regulating the cell elongation and division
OsKTN80a	Os10g0494800	LOC_Os10g35200	cell elongation	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa
OsKTN80a	Os10g0494800	LOC_Os10g35200	primary root	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa
OsKTN80a	Os10g0494800	LOC_Os10g35200	growth	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	Overexpression of OsKTN80a caused the retarded root growth of rice seedlings
OsKTN80a	Os10g0494800	LOC_Os10g35200	growth	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	We prove that OsKTN80a, possibly associated with OsKTN60, is involved in root growth via regulating the cell elongation and division
OsKTN80a	Os10g0494800	LOC_Os10g35200	seedling	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	Overexpression of OsKTN80a caused the retarded root growth of rice seedlings
OsKTN80a	Os10g0494800	LOC_Os10g35200	root	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	Overexpression of OsKTN80a caused the retarded root growth of rice seedlings
OsKTN80a	Os10g0494800	LOC_Os10g35200	root	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	We prove that OsKTN80a, possibly associated with OsKTN60, is involved in root growth via regulating the cell elongation and division
OsKTN80a	Os10g0494800	LOC_Os10g35200	root	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa
OsKTN80a	Os10g0494800	LOC_Os10g35200	cell division	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa
OsKu70	Os07g0184900	LOC_Os07g08729	vegetative	OsKu70 is associated with developmental growth and genome stability in rice	In contrast to what was observed in Arabidopsis (Arabidopsis thaliana) atku70 mutants, homozygous G2 osku70 rice plants displayed severe developmental defects in both vegetative and reproductive organs under normal growth conditions, resulting in sterile flowers
OsKu70	Os07g0184900	LOC_Os07g08729	reproductive	OsKu70 is associated with developmental growth and genome stability in rice	In contrast to what was observed in Arabidopsis (Arabidopsis thaliana) atku70 mutants, homozygous G2 osku70 rice plants displayed severe developmental defects in both vegetative and reproductive organs under normal growth conditions, resulting in sterile flowers
OsKu70	Os07g0184900	LOC_Os07g08729	growth	OsKu70 is associated with developmental growth and genome stability in rice	In contrast to what was observed in Arabidopsis (Arabidopsis thaliana) atku70 mutants, homozygous G2 osku70 rice plants displayed severe developmental defects in both vegetative and reproductive organs under normal growth conditions, resulting in sterile flowers
OsKu70	Os07g0184900	LOC_Os07g08729	growth	OsKu70 is associated with developmental growth and genome stability in rice	These results suggest that OsKu70 is required for the maintenance of chromosome stability and normal developmental growth in rice plants
OsKu70	Os07g0184900	LOC_Os07g08729	growth	OsKu70 is associated with developmental growth and genome stability in rice	OsKu70 is associated with developmental growth and genome stability in rice
OsKu70	Os07g0184900	LOC_Os07g08729	sterile	OsKu70 is associated with developmental growth and genome stability in rice	In contrast to what was observed in Arabidopsis (Arabidopsis thaliana) atku70 mutants, homozygous G2 osku70 rice plants displayed severe developmental defects in both vegetative and reproductive organs under normal growth conditions, resulting in sterile flowers
OsKu70	Os07g0184900	LOC_Os07g08729	flower	OsKu70 is associated with developmental growth and genome stability in rice	In contrast to what was observed in Arabidopsis (Arabidopsis thaliana) atku70 mutants, homozygous G2 osku70 rice plants displayed severe developmental defects in both vegetative and reproductive organs under normal growth conditions, resulting in sterile flowers
OsKu80|Ku80	Os03g0856200	LOC_Os03g63920	growth	Suppression of OsKu80 results in defects in developmental growth and increased telomere length in rice (Oryza sativa L.).	Suppression of OsKu80 results in defects in developmental growth and increased telomere length in rice (Oryza sativa L.).
OsKu80|Ku80	Os03g0856200	LOC_Os03g63920	growth	Suppression of OsKu80 results in defects in developmental growth and increased telomere length in rice (Oryza sativa L.).	These results are discussed with the idea that OsKu80 plays a role in developmental growth and telomere length regulation in rice plants
Osl2	Os04g0614600	LOC_Os04g52450	senescence	A novel senescence-associated gene encoding gamma-aminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence	A novel senescence-associated gene encoding gammaaminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence
Osl2	Os04g0614600	LOC_Os04g52450	leaf senescence	A novel senescence-associated gene encoding gamma-aminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence	A novel senescence-associated gene encoding gamma-aminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence
Osl2	Os04g0614600	LOC_Os04g52450	aminobutyric acid	A novel senescence-associated gene encoding gamma-aminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence	A novel senescence-associated gene encoding gamma-aminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence
Osl2	Os04g0614600	LOC_Os04g52450	transaminase	A novel senescence-associated gene encoding gamma-aminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence	A novel senescence-associated gene encoding gamma-aminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence
OsLa1	Os04g0497600	LOC_Os04g42010	grain	The RNA binding protein OsLa influences grain and anther development in rice.	 Mutant OsLa1 reduced grain length and pollen fertility, whereas OsLa1 overexpression caused the opposite phenotypes
OsLa1	Os04g0497600	LOC_Os04g42010	grain	The RNA binding protein OsLa influences grain and anther development in rice.	 Further experiments indicated that OsLa1 modulates grain size by influencing cell expansion
OsLa1	Os04g0497600	LOC_Os04g42010	grain length	The RNA binding protein OsLa influences grain and anther development in rice.	 Mutant OsLa1 reduced grain length and pollen fertility, whereas OsLa1 overexpression caused the opposite phenotypes
OsLa1	Os04g0497600	LOC_Os04g42010	grain size	The RNA binding protein OsLa influences grain and anther development in rice.	 Further experiments indicated that OsLa1 modulates grain size by influencing cell expansion
OsLa1	Os04g0497600	LOC_Os04g42010	pollen	The RNA binding protein OsLa influences grain and anther development in rice.	 Mutant OsLa1 reduced grain length and pollen fertility, whereas OsLa1 overexpression caused the opposite phenotypes
OsLa1	Os04g0497600	LOC_Os04g42010	Pollen Fertility	The RNA binding protein OsLa influences grain and anther development in rice.	 Mutant OsLa1 reduced grain length and pollen fertility, whereas OsLa1 overexpression caused the opposite phenotypes
OsLa1	Os04g0497600	LOC_Os04g42010	cell expansion	The RNA binding protein OsLa influences grain and anther development in rice.	 Further experiments indicated that OsLa1 modulates grain size by influencing cell expansion
OsLAC	Os05g0458600	LOC_Os05g38420	grain yield	Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching	We determined that OsmiR397 increases grain yield by downregulating its target, OsLAC, whose product is a laccase-like protein that we found to be involved in the sensitivity of plants to brassinosteroids
OsLAC	Os05g0458600	LOC_Os05g38420	grain	Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching	We determined that OsmiR397 increases grain yield by downregulating its target, OsLAC, whose product is a laccase-like protein that we found to be involved in the sensitivity of plants to brassinosteroids
OsLAC	Os05g0458600	LOC_Os05g38420	brassinosteroid	Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching	We determined that OsmiR397 increases grain yield by downregulating its target, OsLAC, whose product is a laccase-like protein that we found to be involved in the sensitivity of plants to brassinosteroids
OsLAC	Os05g0458600	LOC_Os05g38420	yield	Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching	We determined that OsmiR397 increases grain yield by downregulating its target, OsLAC, whose product is a laccase-like protein that we found to be involved in the sensitivity of plants to brassinosteroids
OsLAC10	Os02g0749700	LOC_Os02g51440	tolerance	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.
OsLAC10	Os02g0749700	LOC_Os02g51440	tolerance	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.	In addition, OsLAC10 is likely involved in lignin biosynthesis, and reduces the uptake of Cu into roots required for Arabidopsis to develop tolerance to Cu
OsLAC10	Os02g0749700	LOC_Os02g51440	stress	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.
OsLAC10	Os02g0749700	LOC_Os02g51440	copper	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.
OsLAC10	Os02g0749700	LOC_Os02g51440	lignin	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.	Lignin accumulation increased in the roots of Arabidopsis over-expressing OsLAC10 (OsLAC10-OX) compared to wild-type controls
OsLAC10	Os02g0749700	LOC_Os02g51440	lignin	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.	In addition, OsLAC10 is likely involved in lignin biosynthesis, and reduces the uptake of Cu into roots required for Arabidopsis to develop tolerance to Cu
OsLAC10	Os02g0749700	LOC_Os02g51440	lignin biosynthesis	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.	In addition, OsLAC10 is likely involved in lignin biosynthesis, and reduces the uptake of Cu into roots required for Arabidopsis to develop tolerance to Cu
OsLAC13	Os05g0458300	LOC_Os05g38390	root	Laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	OsLAC13 also induced H2O2 production and mitochondrial damage in the root tip cells which caused the lethal phenotype
OsLAC13	Os05g0458300	LOC_Os05g38390	anther	Laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	OsLAC13 expressed in anthers and promotes hydrogen peroxide production both in vitro and in the filaments and anther connectives
OsLAC13	Os05g0458300	LOC_Os05g38390	seed	Laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	Knock-out of OsLAC13 showed significantly increased seed setting rate, while overexpression of this gene exhibited induced mitochondrial damage and suppressed sugar transportation in anthers, which in turn affected seed setting rate
OsLAC13	Os05g0458300	LOC_Os05g38390	seed	Laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	We also showed that high abundant of OsmiR397, the suppressor of OsLAC13 mRNA, increased the seed setting rate of rice plants, and restrains H2O2 accumulation in roots during oxidative stress
OsLAC13	Os05g0458300	LOC_Os05g38390	seed	Laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	Our results suggested a novel regulatory role of OsLAC13 gene in regulating seed setting rate by affecting H2O2 dynamics and mitochondrial integrity in rice
OsLAC13	Os05g0458300	LOC_Os05g38390	oxidative stress	Laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	We also showed that high abundant of OsmiR397, the suppressor of OsLAC13 mRNA, increased the seed setting rate of rice plants, and restrains H2O2 accumulation in roots during oxidative stress
OsLAC13	Os05g0458300	LOC_Os05g38390	oxidative	Laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	We also showed that high abundant of OsmiR397, the suppressor of OsLAC13 mRNA, increased the seed setting rate of rice plants, and restrains H2O2 accumulation in roots during oxidative stress
OsLAC13	Os05g0458300	LOC_Os05g38390	stress	Laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	We also showed that high abundant of OsmiR397, the suppressor of OsLAC13 mRNA, increased the seed setting rate of rice plants, and restrains H2O2 accumulation in roots during oxidative stress
OsLAC13	Os05g0458300	LOC_Os05g38390	sugar	Laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	Knock-out of OsLAC13 showed significantly increased seed setting rate, while overexpression of this gene exhibited induced mitochondrial damage and suppressed sugar transportation in anthers, which in turn affected seed setting rate
OsLACS9	Os12g0168700	LOC_Os12g07110	growth	Functional Analysis of Rice Long-Chain Acyl-CoA Synthetase 9 (OsLACS9) in the Chloroplast Envelope Membrane.	Overall, the data in this study provide an advanced understanding of the function of OsLACS9 and its role in starch degradation and plant growth
OsLACS9	Os12g0168700	LOC_Os12g07110	starch	Functional Analysis of Rice Long-Chain Acyl-CoA Synthetase 9 (OsLACS9) in the Chloroplast Envelope Membrane.	Our results indicate that the loss-of-function mutations in OsLACS9 affect the architecture of internodes resulting in dwarf plants with large starch granules in the chloroplast, showing the suppression of starch degradation
OsLACS9	Os12g0168700	LOC_Os12g07110	starch	Functional Analysis of Rice Long-Chain Acyl-CoA Synthetase 9 (OsLACS9) in the Chloroplast Envelope Membrane.	Overall, the data in this study provide an advanced understanding of the function of OsLACS9 and its role in starch degradation and plant growth
OsLACS9	Os12g0168700	LOC_Os12g07110	architecture	Functional Analysis of Rice Long-Chain Acyl-CoA Synthetase 9 (OsLACS9) in the Chloroplast Envelope Membrane.	Our results indicate that the loss-of-function mutations in OsLACS9 affect the architecture of internodes resulting in dwarf plants with large starch granules in the chloroplast, showing the suppression of starch degradation
OsLACS9	Os12g0168700	LOC_Os12g07110	plant growth	Functional Analysis of Rice Long-Chain Acyl-CoA Synthetase 9 (OsLACS9) in the Chloroplast Envelope Membrane.	Overall, the data in this study provide an advanced understanding of the function of OsLACS9 and its role in starch degradation and plant growth
OsLACS9	Os12g0168700	LOC_Os12g07110	dwarf	Functional Analysis of Rice Long-Chain Acyl-CoA Synthetase 9 (OsLACS9) in the Chloroplast Envelope Membrane.	Our results indicate that the loss-of-function mutations in OsLACS9 affect the architecture of internodes resulting in dwarf plants with large starch granules in the chloroplast, showing the suppression of starch degradation
OsLBD38	Os07g0589000	LOC_Os07g40000	yield	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Overexpression of OsLBD37 and OsLBD38 separately causes delayed heading date and increased yield
OsLBD38	Os07g0589000	LOC_Os07g40000	R protein	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Both OsLBD37 and OsLBD38 are expressed in rhythmic pattern, and their proteins are localized in the nucleus
OsLBD38	Os07g0589000	LOC_Os07g40000	heading date	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Overexpression of OsLBD37 and OsLBD38 separately causes delayed heading date and increased yield
OsLBD38	Os07g0589000	LOC_Os07g40000	heading date	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Further analysis revealed that OsLBD37 and OsLBD38 delayed heading date by down-regulating the expression of the florigen genes Hd3a and RFT1 through key regulator of heading date Ehd1
OsLBD38	Os07g0589000	LOC_Os07g40000	nucleus	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Both OsLBD37 and OsLBD38 are expressed in rhythmic pattern, and their proteins are localized in the nucleus
OsLBD38	Os07g0589000	LOC_Os07g40000	transcriptional activator	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	OsLBD37 and OsLBD38 are two class II type LBD proteins, function as transcriptional activators
OsLCB2a1	Os01g0928800	LOC_Os01g70380	seedlings	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Transcripts of OsLCB2a1 gene in rice seedlings were increased at 4 h, but decreased at 8-24 h after BPH attack
OsLCB2a1	Os01g0928800	LOC_Os01g70380	defense	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Herein we report that a rice LCB gene, OsLCB2a1 encoding a subunit of serine palmitoyltransferase (SPT), a key enzyme responsible for the de novo biosynthesis of sphingolipids, plays a critical role in plant defense response to the brown planthopper (BPH) attack and that its up-regulation protects plants from herbivore infestation
OsLCB2a1	Os01g0928800	LOC_Os01g70380	insect	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.
OsLCB2a1	Os01g0928800	LOC_Os01g70380	brown planthopper	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Herein we report that a rice LCB gene, OsLCB2a1 encoding a subunit of serine palmitoyltransferase (SPT), a key enzyme responsible for the de novo biosynthesis of sphingolipids, plays a critical role in plant defense response to the brown planthopper (BPH) attack and that its up-regulation protects plants from herbivore infestation
OsLCB2a1	Os01g0928800	LOC_Os01g70380	defense response	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Herein we report that a rice LCB gene, OsLCB2a1 encoding a subunit of serine palmitoyltransferase (SPT), a key enzyme responsible for the de novo biosynthesis of sphingolipids, plays a critical role in plant defense response to the brown planthopper (BPH) attack and that its up-regulation protects plants from herbivore infestation
OsLCB2a1	Os01g0928800	LOC_Os01g70380	stress	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Our data highlight the key functions of OsLCB2a1 in biotic stress response in plants
OsLCB2a1	Os01g0928800	LOC_Os01g70380	biotic stress	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Our data highlight the key functions of OsLCB2a1 in biotic stress response in plants
OsLCB2a1	Os01g0928800	LOC_Os01g70380	stress response	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Our data highlight the key functions of OsLCB2a1 in biotic stress response in plants
OsLCBK1	Os10g0516800	LOC_Os10g37280	blast disease	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCBK1	Os10g0516800	LOC_Os10g37280	disease resistance	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Transgenic tobacco plants overexpressing OsLCBK1 were generated and disease resistance assays indicate that the OsLCBK1-overexpressing plants showed enhanced disease resistance against Pseudmonas syringae pv
OsLCBK1	Os10g0516800	LOC_Os10g37280	cell death	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Treatment with fungal toxin fumonisin B1, an effective inducer of PCD in plants, resulted in reduced level of cell death in the OsLCBK1-overexpressing plants, as indicated by cell death staining, leakage of electrolyte and expression of hypersensitive response indicator genes
OsLCBK1	Os10g0516800	LOC_Os10g37280	disease	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCBK1	Os10g0516800	LOC_Os10g37280	disease	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Transgenic tobacco plants overexpressing OsLCBK1 were generated and disease resistance assays indicate that the OsLCBK1-overexpressing plants showed enhanced disease resistance against Pseudmonas syringae pv
OsLCBK1	Os10g0516800	LOC_Os10g37280	seedling	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCBK1	Os10g0516800	LOC_Os10g37280	defense	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCBK1	Os10g0516800	LOC_Os10g37280	defense	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression levels of some defense-related genes were constitutively up-regulated and further induced after pathogen infection in the OsLCBK1-overexpressing plants
OsLCBK1	Os10g0516800	LOC_Os10g37280	blast	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCBK2	Os04g0541500	LOC_Os04g45800	blast disease	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCBK2	Os04g0541500	LOC_Os04g45800	blast	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCBK2	Os04g0541500	LOC_Os04g45800	disease	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCBK2	Os04g0541500	LOC_Os04g45800	defense	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCBK2	Os04g0541500	LOC_Os04g45800	seedling	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death	Expression of OsLCBK1 and OsLCBK2 was induced in rice seedlings after treatments with defense signaling molecules and after infection by Magnaporthe grisea, the causal agent of blast disease
OsLCD	Os01g0956700	LOC_Os01g72670	seedlings	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 Oxidative damage also decreased, and plant growth increased in all oslcd single mutant seedlings as compared to WTs in the presence of Cd
OsLCD	Os01g0956700	LOC_Os01g72670	growth	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 Oxidative damage also decreased, and plant growth increased in all oslcd single mutant seedlings as compared to WTs in the presence of Cd
OsLCD	Os01g0956700	LOC_Os01g72670	growth	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 Plant growth and most yield traits, as well essential element concentrations in rice seedling shoots, brown rice, and rice straw, were similar between oslcd single mutants and WTs
OsLCD	Os01g0956700	LOC_Os01g72670	seedling	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 Plant growth and most yield traits, as well essential element concentrations in rice seedling shoots, brown rice, and rice straw, were similar between oslcd single mutants and WTs
OsLCD	Os01g0956700	LOC_Os01g72670	yield	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 However, the effects of OsLCD gene editing on Cd accumulation, plant growth, and yield traits remain unknown
OsLCD	Os01g0956700	LOC_Os01g72670	yield	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 Plant growth and most yield traits, as well essential element concentrations in rice seedling shoots, brown rice, and rice straw, were similar between oslcd single mutants and WTs
OsLCD	Os01g0956700	LOC_Os01g72670	oxidative	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 Oxidative damage also decreased, and plant growth increased in all oslcd single mutant seedlings as compared to WTs in the presence of Cd
OsLCD	Os01g0956700	LOC_Os01g72670	plant growth	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 However, the effects of OsLCD gene editing on Cd accumulation, plant growth, and yield traits remain unknown
OsLCD	Os01g0956700	LOC_Os01g72670	plant growth	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 Oxidative damage also decreased, and plant growth increased in all oslcd single mutant seedlings as compared to WTs in the presence of Cd
OsLCD	Os01g0956700	LOC_Os01g72670	plant growth	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	 Plant growth and most yield traits, as well essential element concentrations in rice seedling shoots, brown rice, and rice straw, were similar between oslcd single mutants and WTs
OsLCD	Os01g0956700	LOC_Os01g72670	cadmium	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	The OsLCD gene, which has been implicated in cadmium (Cd) accumulation in rice, might be a useful target for CRISPR/Cas9 editing
OsLCT1	None	LOC_Os06g38120	transporter	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	In this study, we identified a rice Cd transporter, OsLCT1, involved in Cd transport to the grains
OsLCT1	None	LOC_Os06g38120	transporter	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains
OsLCT1	None	LOC_Os06g38120	cadmium	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains
OsLCT1	None	LOC_Os06g38120	grain	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	In this study, we identified a rice Cd transporter, OsLCT1, involved in Cd transport to the grains
OsLCT1	None	LOC_Os06g38120	grain	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	The knockdown plants of OsLCT1 accumulated approximately half as much Cd in the grains as did the control plants
OsLCT1	None	LOC_Os06g38120	grain	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	The content of other metals in rice grains and plant growth were not negatively affected by OsLCT1 suppression
OsLCT1	None	LOC_Os06g38120	grain	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	These results suggest that OsLCT1 functions at the nodes in Cd transport into grains and that in a standard japonica cultivar, the regulation of OsLCT1 enables the generation of low-Cd rice without negative effects on agronomical traits
OsLCT1	None	LOC_Os06g38120	grain	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains
OsLCT1	None	LOC_Os06g38120	reproductive	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	In rice plants, strong OsLCT1 expression was observed in leaf blades and nodes during the reproductive stage
OsLCT1	None	LOC_Os06g38120	growth	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	The content of other metals in rice grains and plant growth were not negatively affected by OsLCT1 suppression
OsLCT1	None	LOC_Os06g38120	xylem	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	RNAi-mediated knockdown of OsLCT1 did not affect xylem-mediated Cd transport but reduced phloem-mediated Cd transport
OsLCT1	None	LOC_Os06g38120	leaf	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	In rice plants, strong OsLCT1 expression was observed in leaf blades and nodes during the reproductive stage
OsLCT1	None	LOC_Os06g38120	vascular bundle	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains	In the uppermost node, OsLCT1 transcripts were detected around large vascular bundles and in diffuse vascular bundles
OsLCT1	None	LOC_Os06g38120	zinc	Co-expression of multiple heavy metal transporters changes the translocation, accumulation, and potential oxidative stress of Cd and Zn in rice (Oryza sativa).	The OsHMA2, OsLCT1 and OsZIP3 transporters were all involved in zinc (Zn) and cadmium (Cd) transport
OsLCT1	None	LOC_Os06g38120	cadmium	Co-expression of multiple heavy metal transporters changes the translocation, accumulation, and potential oxidative stress of Cd and Zn in rice (Oryza sativa).	The OsHMA2, OsLCT1 and OsZIP3 transporters were all involved in zinc (Zn) and cadmium (Cd) transport
OsLCT1	None	LOC_Os06g38120	drought	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
OsLCT1	None	LOC_Os06g38120	stress	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
OsLCT1	None	LOC_Os06g38120	transporter	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
OsLCT1	None	LOC_Os06g38120	drought stress	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
OsLCT1	None	LOC_Os06g38120	drought stress	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
OsLCT2	NONE	NONE	xylem	Overexpression of OsLCT2, a Low-Affinity Cation Transporter Gene, Reduces Cadmium Accumulation in Shoots and Grains of Rice.	 OsLCT2 was expressed in all tissues of the elongation and maturation zones in roots, with the strongest expression in pericycle and stele cells adjacent to the xylem
OsLCT2	NONE	NONE	xylem	Overexpression of OsLCT2, a Low-Affinity Cation Transporter Gene, Reduces Cadmium Accumulation in Shoots and Grains of Rice.	 Overexpression of OsLCT2 reduces Cd accumulation in rice shoots and grains by limiting the amounts of Cd loaded into the xylem and restricting Cd translocation from roots to shoots of rice
OsLCT2	NONE	NONE	transporter	Overexpression of OsLCT2, a Low-Affinity Cation Transporter Gene, Reduces Cadmium Accumulation in Shoots and Grains of Rice.	 We identified a member of the low-affinity cation transporter family, OsLCT2 in rice
OsLDC-like1	Os09g0547500	LOC_Os09g37540	stress tolerance	Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1.	Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1.
OsLDC-like1	Os09g0547500	LOC_Os09g37540	stress	Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1.	Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1.
OsLDC-like1	Os09g0547500	LOC_Os09g37540	oxidative stress	Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1.	Thus, mutation of OsLDC-like 1 conferred an oxidative stress-tolerant phenotype.
OsLEA1a	Os01g0159600	LOC_Os01g06630	vegetative	OsLEA1a, a new Em-like protein of cereal plants	Transcriptome analysis revealed OsLEA1a mainly expressed in embryos, with no or only a few transcripts in osmotic stress-treated vegetative tissues
OsLEA1a	Os01g0159600	LOC_Os01g06630	stem	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	Real-time PCR analysis showed that OsLEA1a was expressed in roots, leaves and panicles of rice, with no or only a few transcripts in stem tissues, and remained at a relatively higher level in leaves during the tillering period, the heading period, the filling period and the full ripe period
OsLEA1a	Os01g0159600	LOC_Os01g06630	resistance	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.
OsLEA1a	Os01g0159600	LOC_Os01g06630	resistance	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	The accumulation of the TrxA-OsLEA1a fusion protein or OsLEA1a protein interfered with the resistance of E
OsLEA1a	Os01g0159600	LOC_Os01g06630	abiotic stress	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.
OsLEA1a	Os01g0159600	LOC_Os01g06630	abiotic stress	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	The findings suggested that the OsLEA1a may confor antibacterial activity under abiotic stresses
OsLEA1a	Os01g0159600	LOC_Os01g06630	tillering	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	Real-time PCR analysis showed that OsLEA1a was expressed in roots, leaves and panicles of rice, with no or only a few transcripts in stem tissues, and remained at a relatively higher level in leaves during the tillering period, the heading period, the filling period and the full ripe period
OsLEA1a	Os01g0159600	LOC_Os01g06630	biotic stress	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.
OsLEA1a	Os01g0159600	LOC_Os01g06630	biotic stress	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	The findings suggested that the OsLEA1a may confor antibacterial activity under abiotic stresses
OsLEA1a	Os01g0159600	LOC_Os01g06630	growth	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	However, in the present study, based on growth status and physiological indices of rice plant, the overexpression of OsLEA1a in rice conferred increased resistance to abiotic stresses compared with the wild-type (WT) plants
OsLEA1a	Os01g0159600	LOC_Os01g06630	resistance	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	Our previous studies have shown that the heterologous expression of OsLEA1a interfered with the resistance of Escherichia coli to abiotic stresses
OsLEA1a	Os01g0159600	LOC_Os01g06630	resistance	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	However, in the present study, based on growth status and physiological indices of rice plant, the overexpression of OsLEA1a in rice conferred increased resistance to abiotic stresses compared with the wild-type (WT) plants
OsLEA1a	Os01g0159600	LOC_Os01g06630	tolerance	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice
OsLEA1a	Os01g0159600	LOC_Os01g06630	tolerance	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	The present study shows that OsLEA1a could be a useful candidate gene for engineering abiotic stress tolerance in cultivated plants
OsLEA1a	Os01g0159600	LOC_Os01g06630	abiotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice
OsLEA1a	Os01g0159600	LOC_Os01g06630	abiotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	Our previous studies have shown that the heterologous expression of OsLEA1a interfered with the resistance of Escherichia coli to abiotic stresses
OsLEA1a	Os01g0159600	LOC_Os01g06630	abiotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	However, in the present study, based on growth status and physiological indices of rice plant, the overexpression of OsLEA1a in rice conferred increased resistance to abiotic stresses compared with the wild-type (WT) plants
OsLEA1a	Os01g0159600	LOC_Os01g06630	abiotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	The results indicate that the OsLEA1a gene is involved in the protective response of plants to various abiotic stresses by inhibiting cell membrane damage and enhancing reactive oxygen species scavenging capacity
OsLEA1a	Os01g0159600	LOC_Os01g06630	abiotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	The present study shows that OsLEA1a could be a useful candidate gene for engineering abiotic stress tolerance in cultivated plants
OsLEA1a	Os01g0159600	LOC_Os01g06630	stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	The present study shows that OsLEA1a could be a useful candidate gene for engineering abiotic stress tolerance in cultivated plants
OsLEA1a	Os01g0159600	LOC_Os01g06630	biotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice
OsLEA1a	Os01g0159600	LOC_Os01g06630	biotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	Our previous studies have shown that the heterologous expression of OsLEA1a interfered with the resistance of Escherichia coli to abiotic stresses
OsLEA1a	Os01g0159600	LOC_Os01g06630	biotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	However, in the present study, based on growth status and physiological indices of rice plant, the overexpression of OsLEA1a in rice conferred increased resistance to abiotic stresses compared with the wild-type (WT) plants
OsLEA1a	Os01g0159600	LOC_Os01g06630	biotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	The results indicate that the OsLEA1a gene is involved in the protective response of plants to various abiotic stresses by inhibiting cell membrane damage and enhancing reactive oxygen species scavenging capacity
OsLEA1a	Os01g0159600	LOC_Os01g06630	biotic stress	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	The present study shows that OsLEA1a could be a useful candidate gene for engineering abiotic stress tolerance in cultivated plants
OsLEA1a	Os01g0159600	LOC_Os01g06630	reactive oxygen species	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	The results indicate that the OsLEA1a gene is involved in the protective response of plants to various abiotic stresses by inhibiting cell membrane damage and enhancing reactive oxygen species scavenging capacity
OsLEA1a	Os01g0159600	LOC_Os01g06630	stress tolerance	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice	The present study shows that OsLEA1a could be a useful candidate gene for engineering abiotic stress tolerance in cultivated plants
OsLEA3-2	Os03g0322900	LOC_Os03g20680	drought	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance
OsLEA3-2	Os03g0322900	LOC_Os03g20680	drought tolerance	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance
OsLEA3-2	Os03g0322900	LOC_Os03g20680	growth	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance	The coding protein localizes to the nucleus and overexpression of OsLEA3-2 in yeast improved growth performance compared with control under salt- and osmotic-stress conditions
OsLEA3-2	Os03g0322900	LOC_Os03g20680	salt	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance	The coding protein localizes to the nucleus and overexpression of OsLEA3-2 in yeast improved growth performance compared with control under salt- and osmotic-stress conditions
OsLEA3-2	Os03g0322900	LOC_Os03g20680	salt	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance
OsLEA3-2	Os03g0322900	LOC_Os03g20680	abiotic stress	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance	OsLEA3-2 was found to be only expressed in the embryo and can be induced by abiotic stresses
OsLEA3-2	Os03g0322900	LOC_Os03g20680	abiotic stress	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance	These results indicated that OsLEA3-2 plays an important role in tolerance to abiotic stresses
OsLEA3-2	Os03g0322900	LOC_Os03g20680	abiotic stress	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought resistance	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	In this report, a LEA protein gene OsLEA3-1 was identified and over-expressed in rice to test the drought resistance of transgenic lines under the field conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought resistance	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	These results indicate that transgenic rice with significantly enhanced drought resistance and without yield penalty can be generated by over-expressing OsLEA3-1 gene with appropriate promoters and following a bipartite (stress and non-stress) in-field screening protocol
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought resistance	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	In this report, a LEA protein gene OsLEA3-1 was identified and over-expressed in rice to test the drought resistance of transgenic lines under the field conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought resistance	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Drought resistance pre-screening of T(1) families at anthesis stage revealed that the over-expressing families with OsLEA3-S and OsLEA3-H constructs had significantly higher relative yield (yield under drought stress treatment/yield under normal growth conditions) than the wild type under drought stress conditions, although a yield penalty existed in T(1) families under normal growth conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought resistance	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	These results indicate that transgenic rice with significantly enhanced drought resistance and without yield penalty can be generated by over-expressing OsLEA3-1 gene with appropriate promoters and following a bipartite (stress and non-stress) in-field screening protocol
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	cold stress	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	OsLEA3-1 is induced by drought, salt and abscisic acid (ABA), but not by cold stress
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	OsLEA3-1 is induced by drought, salt and abscisic acid (ABA), but not by cold stress
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	The promoter of OsLEA3-1 isolated from the upland rice IRAT109 exhibits strong activity under drought- and salt-stress conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	In this report, a LEA protein gene OsLEA3-1 was identified and over-expressed in rice to test the drought resistance of transgenic lines under the field conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	OsLEA3-1 is induced by drought, salt and abscisic acid (ABA), but not by cold stress
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	The promoter of OsLEA3-1 isolated from the upland rice IRAT109 exhibits strong activity under drought- and salt-stress conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Three expression constructs consisting of the full-length cDNA driven by the drought-inducible promoter of OsLEA3-1 (OsLEA3-H), the CaMV 35S promoter (OsLEA3-S), and the rice Actin1 promoter (OsLEA3-A) were transformed into the drought-sensitive japonica rice Zhonghua 11
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	These results indicate that transgenic rice with significantly enhanced drought resistance and without yield penalty can be generated by over-expressing OsLEA3-1 gene with appropriate promoters and following a bipartite (stress and non-stress) in-field screening protocol
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	ABA	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	Exogenous application of ABA and exposure to salt shock (150 mM NaCl) rapidly induces a de novo, abundant oslea3 transcript accumulation in seedling roots, whereas application of jasmonic acid (9 microM) does not induce oslea3 expression
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	ethylene	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	oxidative	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	grain	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Except for two families (transformed with OsLEA3-A), all the other families (transformed with OsLEA3-S and OsLEA3-H constructs) had higher grain yield than the wild type under drought stress in both the field and the PVC pipes conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	The encoded OSLEA3 protein has previously been found to accumulate to higher levels in roots of two salt-tolerant compared to a salt-sensitive rice variety in response to abscisic acid (ABA) [Moons et al
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	Exogenous application of ABA and exposure to salt shock (150 mM NaCl) rapidly induces a de novo, abundant oslea3 transcript accumulation in seedling roots, whereas application of jasmonic acid (9 microM) does not induce oslea3 expression
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	The stress-induced oslea3 transcript gradually declined upon prolonged salt shock, as wilting-induced damage became irreversible
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	oslea3 expression was compared for the salt-tolerant variety Pokkali and the salt-sensitive cultivar Taichung N1
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	The results suggest that a differential regulation of oslea3 expression is an aspect of the varietal differences in salt stress tolerance
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	yield	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	These results indicate that transgenic rice with significantly enhanced drought resistance and without yield penalty can be generated by over-expressing OsLEA3-1 gene with appropriate promoters and following a bipartite (stress and non-stress) in-field screening protocol
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	grain yield	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Except for two families (transformed with OsLEA3-A), all the other families (transformed with OsLEA3-S and OsLEA3-H constructs) had higher grain yield than the wild type under drought stress in both the field and the PVC pipes conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	yield	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Drought resistance pre-screening of T(1) families at anthesis stage revealed that the over-expressing families with OsLEA3-S and OsLEA3-H constructs had significantly higher relative yield (yield under drought stress treatment/yield under normal growth conditions) than the wild type under drought stress conditions, although a yield penalty existed in T(1) families under normal growth conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	yield	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Except for two families (transformed with OsLEA3-A), all the other families (transformed with OsLEA3-S and OsLEA3-H constructs) had higher grain yield than the wild type under drought stress in both the field and the PVC pipes conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	yield	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	These results indicate that transgenic rice with significantly enhanced drought resistance and without yield penalty can be generated by over-expressing OsLEA3-1 gene with appropriate promoters and following a bipartite (stress and non-stress) in-field screening protocol
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	jasmonic	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	Exogenous application of ABA and exposure to salt shock (150 mM NaCl) rapidly induces a de novo, abundant oslea3 transcript accumulation in seedling roots, whereas application of jasmonic acid (9 microM) does not induce oslea3 expression
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt stress	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	salt stress	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	The results suggest that a differential regulation of oslea3 expression is an aspect of the varietal differences in salt stress tolerance
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	growth	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Drought resistance pre-screening of T(1) families at anthesis stage revealed that the over-expressing families with OsLEA3-S and OsLEA3-H constructs had significantly higher relative yield (yield under drought stress treatment/yield under normal growth conditions) than the wild type under drought stress conditions, although a yield penalty existed in T(1) families under normal growth conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	growth	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	Collectively, our results indicate that the stress-responsive proteins OsNAC5 and OsNAC6 are transcriptional activators that enhance stress tolerance by upregulating the expression of stress-inducible rice genes such as OsLEA3, although the effects of these proteins on growth are different
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	ABA	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	seedling	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	A cDNA clone oslea3, encoding a group 3 late-embryogenesis abundant (LEA) protein was isolated from roots of rice seedlings (Oryza sativa L
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	seedling	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	Exogenous application of ABA and exposure to salt shock (150 mM NaCl) rapidly induces a de novo, abundant oslea3 transcript accumulation in seedling roots, whereas application of jasmonic acid (9 microM) does not induce oslea3 expression
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	In this report, a LEA protein gene OsLEA3-1 was identified and over-expressed in rice to test the drought resistance of transgenic lines under the field conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	OsLEA3-1 is induced by drought, salt and abscisic acid (ABA), but not by cold stress
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	The promoter of OsLEA3-1 isolated from the upland rice IRAT109 exhibits strong activity under drought- and salt-stress conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Three expression constructs consisting of the full-length cDNA driven by the drought-inducible promoter of OsLEA3-1 (OsLEA3-H), the CaMV 35S promoter (OsLEA3-S), and the rice Actin1 promoter (OsLEA3-A) were transformed into the drought-sensitive japonica rice Zhonghua 11
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Drought resistance pre-screening of T(1) families at anthesis stage revealed that the over-expressing families with OsLEA3-S and OsLEA3-H constructs had significantly higher relative yield (yield under drought stress treatment/yield under normal growth conditions) than the wild type under drought stress conditions, although a yield penalty existed in T(1) families under normal growth conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Except for two families (transformed with OsLEA3-A), all the other families (transformed with OsLEA3-S and OsLEA3-H constructs) had higher grain yield than the wild type under drought stress in both the field and the PVC pipes conditions
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	drought	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	These results indicate that transgenic rice with significantly enhanced drought resistance and without yield penalty can be generated by over-expressing OsLEA3-1 gene with appropriate promoters and following a bipartite (stress and non-stress) in-field screening protocol
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	jasmonic acid	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	Exogenous application of ABA and exposure to salt shock (150 mM NaCl) rapidly induces a de novo, abundant oslea3 transcript accumulation in seedling roots, whereas application of jasmonic acid (9 microM) does not induce oslea3 expression
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	root	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	A cDNA clone oslea3, encoding a group 3 late-embryogenesis abundant (LEA) protein was isolated from roots of rice seedlings (Oryza sativa L
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	root	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	The encoded OSLEA3 protein has previously been found to accumulate to higher levels in roots of two salt-tolerant compared to a salt-sensitive rice variety in response to abscisic acid (ABA) [Moons et al
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	root	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponse	Exogenous application of ABA and exposure to salt shock (150 mM NaCl) rapidly induces a de novo, abundant oslea3 transcript accumulation in seedling roots, whereas application of jasmonic acid (9 microM) does not induce oslea3 expression
OsLEA3|OsLEA3-1	Os05g0542500	LOC_Os05g46480	abiotic stress	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	Real-time PCR analysis revealed that some abiotic stress-related genes, such as OsLEA3, OsTPP1, Rab25, gp1 precursor, beta-gal, LOC_Os05g11910 and LOC_Os05g39250, were down-regulated in OsbZIP52 overexpression lines
OsLEA4	Os06g0110200	LOC_Os06g02040	salinity	Molecular analysis of OsLEA4 and its contributions to improve E. coli viability	coli recombinant to high salinity, heat, freezing, and UV radiation, which suggested that OsLEA4 protein may play a protective role under stressed conditions
OsLEA4	Os06g0110200	LOC_Os06g02040	architecture	Molecular analysis of OsLEA4 and its contributions to improve E. coli viability	OsLEA4 protein contains a Pfam:LEA_1 domain architecture at positions 1-73 with three alpha-helical domains and without beta-sheet domain
OsLEA5	Os05g0584200	LOC_Os05g50710	panicle	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L	The expression levels of OsLEA5 in the roots and panicles of full ripe stage were dramatically increased
OsLEA5	Os05g0584200	LOC_Os05g50710	root	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L	The expression levels of OsLEA5 in the roots and panicles of full ripe stage were dramatically increased
OsLEA5	Os05g0584200	LOC_Os05g50710	salinity	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L	coli cells producing OsLEA5 fusion protein exhibited improved resistance against diverse abiotic stresses: high salinity, osmotic, freezing, heat, and UV radiation
OsLEA5	Os05g0584200	LOC_Os05g50710	abiotic stress	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L	coli cells producing OsLEA5 fusion protein exhibited improved resistance against diverse abiotic stresses: high salinity, osmotic, freezing, heat, and UV radiation
OsLEA5	Os05g0584200	LOC_Os05g50710	abiotic stress	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L	The OsLEA5 protein confers stabilization of the LDH under different abiotic stresses, such as heating, freeze-thawing, and drying in vitro
OsLEA5	Os05g0584200	LOC_Os05g50710	abiotic stress	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L	The combined results indicated that OsLEA5 protein was a hydrophobic atypical LEA and closely associated with resistance to multiple abiotic stresses
OsLEA5	Os05g0584200	LOC_Os05g50710	abiotic stress	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L
OsLEA5	Os05g0584200	LOC_Os05g50710	transcription factor	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
OsLEA5	Os05g0584200	LOC_Os05g50710	seed	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
OsLEA5	Os05g0584200	LOC_Os05g50710	seed	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 The seed germination is highly inhibited in ZFP36 overexpression plants under ABA treatment, while an RNA interference (RNAi) mutant of OsLEA5 rice seeds were less sensitive to ABA, and exogenous ASC (ascorbate acid) could alleviate the inhibition induced by ABA
OsLEA5	Os05g0584200	LOC_Os05g50710	seed	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 Thus, our conclusion is that OsAPX1 is a direct target of ZFP36 and OsLEA5 could interact with ZFP36 to co-regulate ABA-inhibited seed germination by controlling the expression of OsAPX1
OsLEA5	Os05g0584200	LOC_Os05g50710	seed germination	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
OsLEA5	Os05g0584200	LOC_Os05g50710	seed germination	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 The seed germination is highly inhibited in ZFP36 overexpression plants under ABA treatment, while an RNA interference (RNAi) mutant of OsLEA5 rice seeds were less sensitive to ABA, and exogenous ASC (ascorbate acid) could alleviate the inhibition induced by ABA
OsLEA5	Os05g0584200	LOC_Os05g50710	seed germination	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 Thus, our conclusion is that OsAPX1 is a direct target of ZFP36 and OsLEA5 could interact with ZFP36 to co-regulate ABA-inhibited seed germination by controlling the expression of OsAPX1
OsLEA5	Os05g0584200	LOC_Os05g50710	 ABA 	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 The seed germination is highly inhibited in ZFP36 overexpression plants under ABA treatment, while an RNA interference (RNAi) mutant of OsLEA5 rice seeds were less sensitive to ABA, and exogenous ASC (ascorbate acid) could alleviate the inhibition induced by ABA
OsLEA5	Os05g0584200	LOC_Os05g50710	zinc	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.
OsLEA5	Os05g0584200	LOC_Os05g50710	ABA	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	 The seed germination is highly inhibited in ZFP36 overexpression plants under ABA treatment, while an RNA interference (RNAi) mutant of OsLEA5 rice seeds were less sensitive to ABA, and exogenous ASC (ascorbate acid) could alleviate the inhibition induced by ABA
OsLEA5	Os05g0584200	LOC_Os05g50710	transcription factor	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Hence, our conclusion is that OsLEA5 participates in the ABA-mediated antioxidant defense to function in drought and salt stress response in rice, and 5C subgroup of LEAs contribute to play co-regulators of the transcription factor ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	seedlings	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	OsLEA5 acts as a co-regulator of a transcriptional factor ZFP36 to enhance the expression and the activity of ascorbate peroxidase OsAPX1 to regulate seed germination in rice, but it it unknown whether OsLEA5 is also crucial in plant seedlings under stress conditions
OsLEA5	Os05g0584200	LOC_Os05g50710	seed	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	OsLEA5 acts as a co-regulator of a transcriptional factor ZFP36 to enhance the expression and the activity of ascorbate peroxidase OsAPX1 to regulate seed germination in rice, but it it unknown whether OsLEA5 is also crucial in plant seedlings under stress conditions
OsLEA5	Os05g0584200	LOC_Os05g50710	defense	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.
OsLEA5	Os05g0584200	LOC_Os05g50710	defense	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Further investigation found that various stimulus and ABA could induce OsLEA5 expression, and OsLEA5 played downstream of ZFP36 to be involved in ABA-induced generation of hydrogen peroxide (H2O2), and the regulation of the expression and the activities of antioxidant defense enzymes in plants leaves, and OsLEA5 contributed to stabilize ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	defense	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Hence, our conclusion is that OsLEA5 participates in the ABA-mediated antioxidant defense to function in drought and salt stress response in rice, and 5C subgroup of LEAs contribute to play co-regulators of the transcription factor ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	drought	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 We found that overexpression of OsLEA5 in rice plants enhanced the tolerance to drought and salt stress; in contrast, an RNA interference (RNAi) mutant of OsLEA5 rice plants were more sensitive to drought and salinity
OsLEA5	Os05g0584200	LOC_Os05g50710	drought	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Hence, our conclusion is that OsLEA5 participates in the ABA-mediated antioxidant defense to function in drought and salt stress response in rice, and 5C subgroup of LEAs contribute to play co-regulators of the transcription factor ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	salinity	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 We found that overexpression of OsLEA5 in rice plants enhanced the tolerance to drought and salt stress; in contrast, an RNA interference (RNAi) mutant of OsLEA5 rice plants were more sensitive to drought and salinity
OsLEA5	Os05g0584200	LOC_Os05g50710	salt	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 We found that overexpression of OsLEA5 in rice plants enhanced the tolerance to drought and salt stress; in contrast, an RNA interference (RNAi) mutant of OsLEA5 rice plants were more sensitive to drought and salinity
OsLEA5	Os05g0584200	LOC_Os05g50710	salt	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Hence, our conclusion is that OsLEA5 participates in the ABA-mediated antioxidant defense to function in drought and salt stress response in rice, and 5C subgroup of LEAs contribute to play co-regulators of the transcription factor ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	seed germination	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	OsLEA5 acts as a co-regulator of a transcriptional factor ZFP36 to enhance the expression and the activity of ascorbate peroxidase OsAPX1 to regulate seed germination in rice, but it it unknown whether OsLEA5 is also crucial in plant seedlings under stress conditions
OsLEA5	Os05g0584200	LOC_Os05g50710	tolerance	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 We found that overexpression of OsLEA5 in rice plants enhanced the tolerance to drought and salt stress; in contrast, an RNA interference (RNAi) mutant of OsLEA5 rice plants were more sensitive to drought and salinity
OsLEA5	Os05g0584200	LOC_Os05g50710	 ABA 	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Further investigation found that various stimulus and ABA could induce OsLEA5 expression, and OsLEA5 played downstream of ZFP36 to be involved in ABA-induced generation of hydrogen peroxide (H2O2), and the regulation of the expression and the activities of antioxidant defense enzymes in plants leaves, and OsLEA5 contributed to stabilize ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	 ABA 	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Additionally, OsLEA5 participates in the accumulation of ABA by upregulating ABA-biosynthesis genes and downregulating ABA-metabolism genes
OsLEA5	Os05g0584200	LOC_Os05g50710	 ABA 	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Moreover, we found two homologue of OsLEA5 (5C700, short for Os05g0526700 and 5C300, short for Os05g0584300) which were induced by ABA also interacted with ZFP36 separately; interestingly, the nucleus-located 5C700 could also act as a co-activator of ZFP36 to modulate OsAPX1 while 5C300 which was ABA-induced downexpressed played as an ABA-induced inhibitor of ZFP36 to regulate OsAPX1
OsLEA5	Os05g0584200	LOC_Os05g50710	salt stress	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 We found that overexpression of OsLEA5 in rice plants enhanced the tolerance to drought and salt stress; in contrast, an RNA interference (RNAi) mutant of OsLEA5 rice plants were more sensitive to drought and salinity
OsLEA5	Os05g0584200	LOC_Os05g50710	salt stress	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Hence, our conclusion is that OsLEA5 participates in the ABA-mediated antioxidant defense to function in drought and salt stress response in rice, and 5C subgroup of LEAs contribute to play co-regulators of the transcription factor ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	stress	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	OsLEA5 acts as a co-regulator of a transcriptional factor ZFP36 to enhance the expression and the activity of ascorbate peroxidase OsAPX1 to regulate seed germination in rice, but it it unknown whether OsLEA5 is also crucial in plant seedlings under stress conditions
OsLEA5	Os05g0584200	LOC_Os05g50710	stress	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Hence, our conclusion is that OsLEA5 participates in the ABA-mediated antioxidant defense to function in drought and salt stress response in rice, and 5C subgroup of LEAs contribute to play co-regulators of the transcription factor ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	ABA	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Further investigation found that various stimulus and ABA could induce OsLEA5 expression, and OsLEA5 played downstream of ZFP36 to be involved in ABA-induced generation of hydrogen peroxide (H2O2), and the regulation of the expression and the activities of antioxidant defense enzymes in plants leaves, and OsLEA5 contributed to stabilize ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	ABA	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Additionally, OsLEA5 participates in the accumulation of ABA by upregulating ABA-biosynthesis genes and downregulating ABA-metabolism genes
OsLEA5	Os05g0584200	LOC_Os05g50710	ABA	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Moreover, we found two homologue of OsLEA5 (5C700, short for Os05g0526700 and 5C300, short for Os05g0584300) which were induced by ABA also interacted with ZFP36 separately; interestingly, the nucleus-located 5C700 could also act as a co-activator of ZFP36 to modulate OsAPX1 while 5C300 which was ABA-induced downexpressed played as an ABA-induced inhibitor of ZFP36 to regulate OsAPX1
OsLEA5	Os05g0584200	LOC_Os05g50710	stress response	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays A Positive Role In ABA-Induced Antioxidant Defense In Oryza Sativa L.	 Hence, our conclusion is that OsLEA5 participates in the ABA-mediated antioxidant defense to function in drought and salt stress response in rice, and 5C subgroup of LEAs contribute to play co-regulators of the transcription factor ZFP36
OsLEA5	Os05g0584200	LOC_Os05g50710	seed	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.
OsLEA5	Os05g0584200	LOC_Os05g50710	seed	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 RNAi knockdown line of OsLEA5 showed decreased seed weight
OsLEA5	Os05g0584200	LOC_Os05g50710	seed	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 Transformant lines overexpressing OsLEA5 exhibited improved quality and seed weight of mature seeds when they were developed under high-temperature conditions, while seed quality strongly declined in wild-type plants exposed to high-temperature stress
OsLEA5	Os05g0584200	LOC_Os05g50710	seed	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 These findings indicate that OsLEA5 contributes to suppressing the deterioration of seed quality when developed under high-temperature conditions
OsLEA5	Os05g0584200	LOC_Os05g50710	quality	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.
OsLEA5	Os05g0584200	LOC_Os05g50710	quality	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 OsLEA5 (Lea14A) interacts with a regulator of the endosperm storage production, FLO2, suggesting that OsLEA5 may be involved in endosperm quality control
OsLEA5	Os05g0584200	LOC_Os05g50710	quality	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 Transformant lines overexpressing OsLEA5 exhibited improved quality and seed weight of mature seeds when they were developed under high-temperature conditions, while seed quality strongly declined in wild-type plants exposed to high-temperature stress
OsLEA5	Os05g0584200	LOC_Os05g50710	quality	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 These findings indicate that OsLEA5 contributes to suppressing the deterioration of seed quality when developed under high-temperature conditions
OsLEA5	Os05g0584200	LOC_Os05g50710	stress	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 Transformant lines overexpressing OsLEA5 exhibited improved quality and seed weight of mature seeds when they were developed under high-temperature conditions, while seed quality strongly declined in wild-type plants exposed to high-temperature stress
OsLEA5	Os05g0584200	LOC_Os05g50710	endosperm	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 OsLEA5 (Lea14A) interacts with a regulator of the endosperm storage production, FLO2, suggesting that OsLEA5 may be involved in endosperm quality control
OsLEA5	Os05g0584200	LOC_Os05g50710	seed weight	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 RNAi knockdown line of OsLEA5 showed decreased seed weight
OsLEA5	Os05g0584200	LOC_Os05g50710	seed weight	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	 Transformant lines overexpressing OsLEA5 exhibited improved quality and seed weight of mature seeds when they were developed under high-temperature conditions, while seed quality strongly declined in wild-type plants exposed to high-temperature stress
OsLEA9	Os01g0314800	LOC_Os01g21250	tolerance	Cold-adaptive evolution at the reproductive stage in Geng/japonica subspecies reveals the role of OsMAPK3 and OsLEA9.	 Transgenic validation showed that OsMAPK3 and OsLEA9 confer cold tolerance at the reproductive stage
OsLEA9	Os01g0314800	LOC_Os01g21250	cold tolerance	Cold-adaptive evolution at the reproductive stage in Geng/japonica subspecies reveals the role of OsMAPK3 and OsLEA9.	 Transgenic validation showed that OsMAPK3 and OsLEA9 confer cold tolerance at the reproductive stage
OsLEA9	Os01g0314800	LOC_Os01g21250	cold	Cold-adaptive evolution at the reproductive stage in Geng/japonica subspecies reveals the role of OsMAPK3 and OsLEA9.	 Transgenic validation showed that OsMAPK3 and OsLEA9 confer cold tolerance at the reproductive stage
OsLEA9	Os01g0314800	LOC_Os01g21250	reproductive	Cold-adaptive evolution at the reproductive stage in Geng/japonica subspecies reveals the role of OsMAPK3 and OsLEA9.	 Transgenic validation showed that OsMAPK3 and OsLEA9 confer cold tolerance at the reproductive stage
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	pollen	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	development	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	Kinase	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	pollen development	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	receptor kinase	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	pollen	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	anther	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	Moreover, normal anther development requires the K-phosphorylation site (a conserved residue at the ATP-binding site) of OsLecRK5
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	anther	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	In vitro assay showed that OsLecRK5 phosphorylates the callose synthesis enzyme UGP1, enhancing callose biosynthesis during anther development
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	development	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	Moreover, normal anther development requires the K-phosphorylation site (a conserved residue at the ATP-binding site) of OsLecRK5
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	development	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	In vitro assay showed that OsLecRK5 phosphorylates the callose synthesis enzyme UGP1, enhancing callose biosynthesis during anther development
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	plasma membrane	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	OsLecRK5 encodes a plasma membrane (PM)-localized lectin receptor like kinase, which can form dimer with itself
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	anther development	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	Moreover, normal anther development requires the K-phosphorylation site (a conserved residue at the ATP-binding site) of OsLecRK5
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	anther development	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	In vitro assay showed that OsLecRK5 phosphorylates the callose synthesis enzyme UGP1, enhancing callose biosynthesis during anther development
OsLecRK-S.7|OsLecRK5|OsDAF1	Os02g0459600	LOC_Os02g26160	pollen development	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	Rice OsLecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.
OslecRK|OsLecRK1	Os04g0201900	LOC_Os04g12540	seed germination	A rice lectin receptor-like kinase that is involved in innate immune responses also contributes to seed germination	Here, we show that the rice lectin receptor-like kinase OslecRK contributes to both seed germination and plant innate immunity
OslecRK|OsLecRK1	Os04g0201900	LOC_Os04g12540	seed germination	A rice lectin receptor-like kinase that is involved in innate immune responses also contributes to seed germination	We demonstrate that knocking down the OslecRK gene depresses the expression of α–amylase genes, reducing seed viability and thereby decreasing the rate of seed germination
OslecRK|OsLecRK1	Os04g0201900	LOC_Os04g12540	seed	A rice lectin receptor-like kinase that is involved in innate immune responses also contributes to seed germination	Here, we show that the rice lectin receptor-like kinase OslecRK contributes to both seed germination and plant innate immunity
OslecRK|OsLecRK1	Os04g0201900	LOC_Os04g12540	seed	A rice lectin receptor-like kinase that is involved in innate immune responses also contributes to seed germination	We demonstrate that knocking down the OslecRK gene depresses the expression of α–amylase genes, reducing seed viability and thereby decreasing the rate of seed germination
OslecRK|OsLecRK1	Os04g0201900	LOC_Os04g12540	plasma membrane	Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.	 MLG-derived oligosaccharides bound to the plasma membrane-anchored LECTIN RECEPTOR KINASE1 OsLecRK1 and modulated its activity
OslecRK|OsLecRK1	Os04g0201900	LOC_Os04g12540	receptor kinase	Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.	 MLG-derived oligosaccharides bound to the plasma membrane-anchored LECTIN RECEPTOR KINASE1 OsLecRK1 and modulated its activity
OsLF	Os05g0541400	LOC_Os05g46370	floral	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	Interestingly, LC2 binds to the promoter region of a floral repressor OsLF and represses the OsLF expression via H3K27 tri-methylation modification
OsLF	Os05g0541400	LOC_Os05g46370	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	In this study, we isolated the OsLF gene by its association with the T-DNA insertion in the rice late flowering mutant named A654
OsLF	Os05g0541400	LOC_Os05g46370	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Overexpression of the OsLF gene in wild type rice recapitulated the late flowering phenotype of A654, indicating that the OsLF gene negatively regulates flowering
OsLF	Os05g0541400	LOC_Os05g46370	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Together, these results suggest that overexpression of OsLF might repress expression of OsGI and Hd1 by competing with OsPRR1 in interacting with OsPIL13 and OsPIL15 and thus induce late flowering
OsLF	Os05g0541400	LOC_Os05g46370	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15
OsLF	Os05g0541400	LOC_Os05g46370	flowering time	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15
OsLF	Os05g0541400	LOC_Os05g46370	flower	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF
OsLFL1	Os01g0713600	LOC_Os01g51610	transcription factor	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa
OsLFL1	Os01g0713600	LOC_Os01g51610	flower	Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter	In this study, it was found that the flowering promoting gene Ehd1 and its putative downstream genes were all repressed by OsLFL1
OsLFL1	Os01g0713600	LOC_Os01g51610	transcription factor	Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter	In the mutant W378, the mutant gene coding OsLFL1, a putative B3 transcription factor gene, was ectopically expressed
OsLFL1	Os01g0713600	LOC_Os01g51610	seed	The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism	Furthermore, GD1 binds to the promoter of OsLFL1, a LEC2/FUS3-like gene of rice, via an RY element, leading to significant up-regulation of OsLFL1 and a large subset of seed maturation genes in the gd1 mutant
OsLFL1	Os01g0713600	LOC_Os01g51610	flowering time	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa
OsLFL1	Os01g0713600	LOC_Os01g51610	flower	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice	As observed from osvil2, a null mutation of OsEMF2b caused late flowering by increasing OsLFL1 expression and decreasing Ehd1 expression
OsLFL1	Os01g0713600	LOC_Os01g51610	flower	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice	Thus, we conclude that OsVIL2 functions together with PRC2 to induce flowering by repressing OsLFL1
OsLFL1	Os01g0713600	LOC_Os01g51610	flower	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice
OsLFL1	Os01g0713600	LOC_Os01g51610	flower	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice	These observations imply that OsMADS50 and OsMADS56 function antagonistically through OsLFL1-Ehd1 in regulating LD-dependent flowering
OsLFL1	Os01g0713600	LOC_Os01g51610	flower	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa	Introduction of OsLFL1-RNAi into mutant W378 successfully down-regulated OsLFL1 expression and restored flowering to almost normal time, indicating that overexpression of OsLFL1 confers late flowering for mutant W378
OsLFL1	Os01g0713600	LOC_Os01g51610	flower	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa	Thus, overexpression of OsLFL1 might delay the flowering of W378 by repressing the expression of Ehd1
OsLFL1	Os01g0713600	LOC_Os01g51610	flower	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa
OsLFNR1|LFNR1	Os02g0103800	LOC_Os02g01340	photosynthesis	Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis	Expression of OsLFNR1 affected the nitrogen assimilation pathway without inhibition of photosynthesis under normal conditions
OsLFNR1|LFNR1	Os02g0103800	LOC_Os02g01340	growth	Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis	We found, by taking advantage of a gain-of-function approach, that expression of two rice (Oryza sativa) full-length cDNAs of leaf-type FNRs (OsLFNR1 and OsLFNR2) led to altered chlorophyll fluorescence and growth in Arabidopsis (Arabidopsis thaliana) and rice
OsLFNR1|LFNR1	Os02g0103800	LOC_Os02g01340	leaf	Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis	We found, by taking advantage of a gain-of-function approach, that expression of two rice (Oryza sativa) full-length cDNAs of leaf-type FNRs (OsLFNR1 and OsLFNR2) led to altered chlorophyll fluorescence and growth in Arabidopsis (Arabidopsis thaliana) and rice
OsLFNR1|LFNR1	Os02g0103800	LOC_Os02g01340	nitrogen	Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis	Expression of OsLFNR1 affected the nitrogen assimilation pathway without inhibition of photosynthesis under normal conditions
OsLFNR2|LFNR2	Os06g0107700	LOC_Os06g01850	growth	Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis	We found, by taking advantage of a gain-of-function approach, that expression of two rice (Oryza sativa) full-length cDNAs of leaf-type FNRs (OsLFNR1 and OsLFNR2) led to altered chlorophyll fluorescence and growth in Arabidopsis (Arabidopsis thaliana) and rice
OsLFNR2|LFNR2	Os06g0107700	LOC_Os06g01850	leaf	Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis	We found, by taking advantage of a gain-of-function approach, that expression of two rice (Oryza sativa) full-length cDNAs of leaf-type FNRs (OsLFNR1 and OsLFNR2) led to altered chlorophyll fluorescence and growth in Arabidopsis (Arabidopsis thaliana) and rice
OsLFR	Os07g0609766	LOC_Os07g41900	development	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa
OsLFR	Os07g0609766	LOC_Os07g41900	seed	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	OsLFR depletion resulted in homozygous lethality in the early seed stage through endosperm and embryo defects, which could be successfully recovered by the OsLFR genomic sequence
OsLFR	Os07g0609766	LOC_Os07g41900	seed	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	Transcriptome profiling showed that many genes, involved in DNA replication, cell cycle, cell wall assembly and cell death, were differentially expressed in a knockout mutant of OsLFR (oslfr-1), which was consistent with the observed seed defects
OsLFR	Os07g0609766	LOC_Os07g41900	cell death	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	Cytological observations revealed that the oslfr endosperm had relatively fewer free nuclei, had abnormal and arrested cellularization, and demonstrated premature programed cell death: the embryo was reduced in size and failed to differentiate
OsLFR	Os07g0609766	LOC_Os07g41900	cell death	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	Transcriptome profiling showed that many genes, involved in DNA replication, cell cycle, cell wall assembly and cell death, were differentially expressed in a knockout mutant of OsLFR (oslfr-1), which was consistent with the observed seed defects
OsLFR	Os07g0609766	LOC_Os07g41900	R protein	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	OsLFR was expressed primarily in the rice spikelets and seeds, and the OsLFR protein was localized to the nucleus
OsLFR	Os07g0609766	LOC_Os07g41900	nucleus	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	OsLFR was expressed primarily in the rice spikelets and seeds, and the OsLFR protein was localized to the nucleus
OsLFR	Os07g0609766	LOC_Os07g41900	cell wall	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	Transcriptome profiling showed that many genes, involved in DNA replication, cell cycle, cell wall assembly and cell death, were differentially expressed in a knockout mutant of OsLFR (oslfr-1), which was consistent with the observed seed defects
OsLFR	Os07g0609766	LOC_Os07g41900	endosperm	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa
OsLFR	Os07g0609766	LOC_Os07g41900	endosperm	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	OsLFR depletion resulted in homozygous lethality in the early seed stage through endosperm and embryo defects, which could be successfully recovered by the OsLFR genomic sequence
OsLFR	Os07g0609766	LOC_Os07g41900	endosperm	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	Cytological observations revealed that the oslfr endosperm had relatively fewer free nuclei, had abnormal and arrested cellularization, and demonstrated premature programed cell death: the embryo was reduced in size and failed to differentiate
OsLFR	Os07g0609766	LOC_Os07g41900	cell cycle	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa	Transcriptome profiling showed that many genes, involved in DNA replication, cell cycle, cell wall assembly and cell death, were differentially expressed in a knockout mutant of OsLFR (oslfr-1), which was consistent with the observed seed defects
OsLG1	Os04g0656500	LOC_Os04g56170	domestication	Genetic control of inflorescence architecture during rice domestication	Association analysis indicates that a single-nucleotide polymorphism-6 in the OsLG1 regulatory region led to a compact panicle architecture in cultivars during rice domestication
OsLG1	Os04g0656500	LOC_Os04g56170	meristem	Mutations in the rice liguleless gene result in a complete loss of the auricle, ligule, and laminar joint	Transgenic plants harboring the OsLG1 promoter:GUS (beta-glucuronidase) reporter gene construct display preferential expression in developing laminar joint regions and meristemic regions
OsLG1	Os04g0656500	LOC_Os04g56170	panicle	Genetic control of inflorescence architecture during rice domestication	Here we show that the spread panicle architecture of wild rice is controlled by a dominant gene, OsLG1, a previously reported SBP-domain transcription factor that controls rice ligule development
OsLG1	Os04g0656500	LOC_Os04g56170	panicle	Genetic control of inflorescence architecture during rice domestication	Association analysis indicates that a single-nucleotide polymorphism-6 in the OsLG1 regulatory region led to a compact panicle architecture in cultivars during rice domestication
OsLG1	Os04g0656500	LOC_Os04g56170	panicle architecture	Genetic control of inflorescence architecture during rice domestication	Here we show that the spread panicle architecture of wild rice is controlled by a dominant gene, OsLG1, a previously reported SBP-domain transcription factor that controls rice ligule development
OsLG1	Os04g0656500	LOC_Os04g56170	panicle architecture	Genetic control of inflorescence architecture during rice domestication	Association analysis indicates that a single-nucleotide polymorphism-6 in the OsLG1 regulatory region led to a compact panicle architecture in cultivars during rice domestication
OsLG1	Os04g0656500	LOC_Os04g56170	architecture	Genetic control of inflorescence architecture during rice domestication	Here we show that the spread panicle architecture of wild rice is controlled by a dominant gene, OsLG1, a previously reported SBP-domain transcription factor that controls rice ligule development
OsLG1	Os04g0656500	LOC_Os04g56170	architecture	Genetic control of inflorescence architecture during rice domestication	Association analysis indicates that a single-nucleotide polymorphism-6 in the OsLG1 regulatory region led to a compact panicle architecture in cultivars during rice domestication
OsLG1	Os04g0656500	LOC_Os04g56170	leaf	Mutations in the rice liguleless gene result in a complete loss of the auricle, ligule, and laminar joint	These results indicate that OsLG1 is a transcriptional factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development
OsLG1	Os04g0656500	LOC_Os04g56170	transcription factor	Genetic control of inflorescence architecture during rice domestication	Here we show that the spread panicle architecture of wild rice is controlled by a dominant gene, OsLG1, a previously reported SBP-domain transcription factor that controls rice ligule development
OsLG1	Os04g0656500	LOC_Os04g56170	panicle	OsLG1 regulates a closed panicle trait in domesticated rice	OsLG1 regulates a closed panicle trait in domesticated rice
OsLG1	Os04g0656500	LOC_Os04g56170	sheath	Mutations in the rice liguleless gene result in a complete loss of the auricle, ligule, and laminar joint	These results indicate that OsLG1 is a transcriptional factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	OsMADS1 is not expressed during panicle branching; earliest expression is in spikelet meristems where it is excluded from the outer rudimentary/sterile glumes
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	OsMADS1 knockdown perturbs the differentiation of specific cell types in the lemma and palea, creating glume-like features, with severe derangements in lemma differentiation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	We thus demonstrate the differential contribution of OsMADS1 for lemma versus palea development and provide evidence for its regulatory function in patterning inner whorl organs
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	leaf	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Collectively, our study suggests that the origin and diversification of OsMADS34 and OsMADS1 contribute to the origin of distinct grass inflorescences and spikelets
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	branching	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	During organogenesis, OsMADS1 expression is confined to the lemma and palea, with weak expression in the carpel
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	Together, these data suggest a distinct role for OsMADS1 and its monocot relatives in assigning lemma/palea identity
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	heading date	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	RT-PCR analyses of the OsMADS50 KO and ubiquitin (ubi):OsMADS50 plants showed that OsMADS50 is an upstream regulator of OsMADS1, OsMADS14, OsMADS15, OsMADS18, and Hd (Heading date)3a, but works either parallel with or downstream of Hd1 and O
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	transcription factor	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	OsMGH3/OsGH3-8 is expressed abundantly in rice florets and is regulated by two related and redundant transcription factors, OsMADS1 and OsMADS6, but its contribution to flower development is not known
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	sterile	leafy hull sterile1 Is a Homeotic Mutation in a Rice MADS Box Gene Affecting Rice Flower Development	These characteristics are very similar to those of leafy hull sterile1 (lhs1)
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	inflorescence	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	inflorescence	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Collectively, our study suggests that the origin and diversification of OsMADS34 and OsMADS1 contribute to the origin of distinct grass inflorescences and spikelets
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice	And molecular analysis indicated that nsr was a novel homeotic mutation in OsMADS1, suggesting that OsMADS1 played a distinct role in regulating the differentiation pattern of floral primordium and in conferring the determination of flower meristem
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	cytokinin	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	The multiple effects of OsMADS1 in promoting auxin transport, signaling, and auxin-dependent expression and its direct repression of three cytokinin A-type response regulators show its role in balancing meristem growth, lateral organ differentiation, and determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet meristem	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	leafy hull sterile1/OsMADS1, from a grass-specific subgroup of LOFSEP genes, is required for specifying a single floret on the spikelet meristem and for floret organ development, but its downstream mechanisms are unknown
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice	And molecular analysis indicated that nsr was a novel homeotic mutation in OsMADS1, suggesting that OsMADS1 played a distinct role in regulating the differentiation pattern of floral primordium and in conferring the determination of flower meristem
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	stamen	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene	Severe loss-of-function mutations of OsMADS1cause complete homeotic conversion of organs (lodicules, stamens, and carpels) of three inner whorls into lemma- and palea-like structures
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice	The gain-of-function of OsMADS1 transgenic lines presented the transformation of outer glumes to lemma-/palea-like organs and no changes in length of lemma and palea, but loss-of-function of OsMADS1 transgenic lines displayed the overdeveloped lemma and palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice	Both findings revealed that OsMADS1 played a role in specifying lemma and palea and acted as a repressor of overdevelopment of lemma and palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	OsMADS1 is not expressed during panicle branching; earliest expression is in spikelet meristems where it is excluded from the outer rudimentary/sterile glumes
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	Ectopic OsMADS1 expression results in stunted panicles with irregularly positioned branches and spikelets
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Strikingly, mutation of a SEPALLATA (SEP)-like gene, OsMADS1 (LHS1), enhanced the defect of osmads6 flowers, and no inner floral organs or glume-like structures were observed in whorls 2 and 3 of osmads1-z osmads6-1 flowers
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Our finding, therefore, suggests that the ancient OsMADS6 gene is able to specify floral state by determining floral organ and meristem identities in monocot crop rice together with OsMADS1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	panicle	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	OsMADS1 is not expressed during panicle branching; earliest expression is in spikelet meristems where it is excluded from the outer rudimentary/sterile glumes
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	panicle	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	Ectopic OsMADS1 expression results in stunted panicles with irregularly positioned branches and spikelets
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	DEP and AFO regulate reproductive habit in rice	In this work, we found three naturally occurring mutants in rice, namely, phoenix (pho), degenerative palea (dep), and abnormal floral organs (afo)
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	architecture	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	Intragenic control of expression of a rice MADS box gene OsMADS1	9-kb 5' upstream promoter region, are required for the GUS expression pattern that coincides with flower-preferential expression of OsMADS1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	Intragenic control of expression of a rice MADS box gene OsMADS1	Notably, incorporation of the intragenic region into the CaMV35S promoter directed the GUS expression pattern similar to that of the endogenous spatial expression of OsMADS1 in flowers
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	OsMADS1 knockdown perturbs the differentiation of specific cell types in the lemma and palea, creating glume-like features, with severe derangements in lemma differentiation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	Conversely, ectopic OsMADS1 expression suffices to direct lemma-like differentiation in the glume
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	We thus demonstrate the differential contribution of OsMADS1 for lemma versus palea development and provide evidence for its regulatory function in patterning inner whorl organs
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Strikingly, mutation of a SEPALLATA (SEP)-like gene, OsMADS1 (LHS1), enhanced the defect of osmads6 flowers, and no inner floral organs or glume-like structures were observed in whorls 2 and 3 of osmads1-z osmads6-1 flowers
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	leaf	leafy hull sterile1 Is a Homeotic Mutation in a Rice MADS Box Gene Affecting Rice Flower Development	These characteristics are very similar to those of leafy hull sterile1 (lhs1)
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	sterile	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	leafy hull sterile1/OsMADS1, from a grass-specific subgroup of LOFSEP genes, is required for specifying a single floret on the spikelet meristem and for floret organ development, but its downstream mechanisms are unknown
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	leafy hull sterile1/OsMADS1, from a grass-specific subgroup of LOFSEP genes, is required for specifying a single floret on the spikelet meristem and for floret organ development, but its downstream mechanisms are unknown
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Moreover, analysis of the double mutant osmads34 osmads1 suggests that OsMADS34 specifies the identities of floral organs, including the lemma/palea, lodicules, stamens, and carpel, in combination with another rice SEP-like gene, OsMADS1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice	The gain-of-function of OsMADS1 transgenic lines presented the transformation of outer glumes to lemma-/palea-like organs and no changes in length of lemma and palea, but loss-of-function of OsMADS1 transgenic lines displayed the overdeveloped lemma and palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice	Both findings revealed that OsMADS1 played a role in specifying lemma and palea and acted as a repressor of overdevelopment of lemma and palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	auxin	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	The multiple effects of OsMADS1 in promoting auxin transport, signaling, and auxin-dependent expression and its direct repression of three cytokinin A-type response regulators show its role in balancing meristem growth, lateral organ differentiation, and determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	auxin	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	We also found that the floral meristem and organ identity gene OsLHS1 showed altered expression with respect to both pattern and levels in the eg1 mutant, and is probably responsible for the pleiotropic floral defects in eg1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	stamen	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Moreover, analysis of the double mutant osmads34 osmads1 suggests that OsMADS34 specifies the identities of floral organs, including the lemma/palea, lodicules, stamens, and carpel, in combination with another rice SEP-like gene, OsMADS1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	During organogenesis, OsMADS1 expression is confined to the lemma and palea, with weak expression in the carpel
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	Together, these data suggest a distinct role for OsMADS1 and its monocot relatives in assigning lemma/palea identity
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene	Severe loss-of-function mutations of OsMADS1cause complete homeotic conversion of organs (lodicules, stamens, and carpels) of three inner whorls into lemma- and palea-like structures
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	DEP and AFO regulate reproductive habit in rice	In this work, we found three naturally occurring mutants in rice, namely, phoenix (pho), degenerative palea (dep), and abnormal floral organs (afo)
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	sterile	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	OsMADS1 is not expressed during panicle branching; earliest expression is in spikelet meristems where it is excluded from the outer rudimentary/sterile glumes
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	OsMGH3/OsGH3-8 is expressed abundantly in rice florets and is regulated by two related and redundant transcription factors, OsMADS1 and OsMADS6, but its contribution to flower development is not known
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice	And molecular analysis indicated that nsr was a novel homeotic mutation in OsMADS1, suggesting that OsMADS1 played a distinct role in regulating the differentiation pattern of floral primordium and in conferring the determination of flower meristem
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	reproductive	DEP and AFO regulate reproductive habit in rice	Thus, OsMADS1 and OsMADS15 are both required to ensure sexual reproduction in rice and mutations of them lead to the switch of reproductive habit from sexual to asexual in rice
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene	Severe loss-of-function mutations of OsMADS1cause complete homeotic conversion of organs (lodicules, stamens, and carpels) of three inner whorls into lemma- and palea-like structures
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	branching	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	OsMADS1 is not expressed during panicle branching; earliest expression is in spikelet meristems where it is excluded from the outer rudimentary/sterile glumes
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral meristem	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	We also found that the floral meristem and organ identity gene OsLHS1 showed altered expression with respect to both pattern and levels in the eg1 mutant, and is probably responsible for the pleiotropic floral defects in eg1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	leafy hull sterile1/OsMADS1, from a grass-specific subgroup of LOFSEP genes, is required for specifying a single floret on the spikelet meristem and for floret organ development, but its downstream mechanisms are unknown
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	The multiple effects of OsMADS1 in promoting auxin transport, signaling, and auxin-dependent expression and its direct repression of three cytokinin A-type response regulators show its role in balancing meristem growth, lateral organ differentiation, and determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	growth	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	The multiple effects of OsMADS1 in promoting auxin transport, signaling, and auxin-dependent expression and its direct repression of three cytokinin A-type response regulators show its role in balancing meristem growth, lateral organ differentiation, and determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	Early flowering and reduced apical dominance result from ectopic expression of a rice MADS box gene	These results suggest that the OsMADS1 gene is involved in flower induction and that it may be used for genetic manipulation of certain plant species
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	vegetative	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	transcription factor	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet meristem	Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals	OsMADS1 is not expressed during panicle branching; earliest expression is in spikelet meristems where it is excluded from the outer rudimentary/sterile glumes
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Moreover, analysis of the double mutant osmads34 osmads1 suggests that OsMADS34 specifies the identities of floral organs, including the lemma/palea, lodicules, stamens, and carpel, in combination with another rice SEP-like gene, OsMADS1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	Furthermore, the expression of two regulators of flowering, Hd3a and OsMADS1, was also affected in the nl1 mutant
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene	These phenotypes resemble the phenotypes caused by mutations of the dicot E-class genes, such as the Arabidopsis SEP123(SEPALLATA1/2/3) and the petunia FBP2(Floral Binding Protein 2), suggesting that OsMADS1play a very similar role in rice to that of defined E-class genes in dicot plants
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Intragenic control of expression of a rice MADS box gene OsMADS1	OsMADS1 is a rice MADS box gene necessary for floral development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice	We also found that the floral meristem and organ identity gene OsLHS1 showed altered expression with respect to both pattern and levels in the eg1 mutant, and is probably responsible for the pleiotropic floral defects in eg1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	panicle	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	The overexpression of OsMGH3 during the vegetative phase affects the overall plant architecture, whereas its inflorescence-specific overexpression creates short panicles with reduced branching, resembling in part the effects of OsMADS1 overexpression
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Our finding, therefore, suggests that the ancient OsMADS6 gene is able to specify floral state by determining floral organ and meristem identities in monocot crop rice together with OsMADS1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Moreover, analysis of the double mutant osmads34 osmads1 suggests that OsMADS34 specifies the identities of floral organs, including the lemma/palea, lodicules, stamens, and carpel, in combination with another rice SEP-like gene, OsMADS1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs	Through a screen for OsMADS1 targets we identify a flower-specific Nt-gh3 type gene, OsMGH3, as a downstream gene
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	leafy hull sterile1 Is a Homeotic Mutation in a Rice MADS Box Gene Affecting Rice Flower Development	It has been demonstrated previously that one of these genes, OsMADS1 (for Oryza sativa MADS box gene1), is expressed preferentially in flowers and causes early flowering when ectopically expressed in tobacco plants
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	leafy hull sterile1 Is a Homeotic Mutation in a Rice MADS Box Gene Affecting Rice Flower Development	In this study, we demonstrated that ectopic expression of OsMADS1 in rice also results in early flowering
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	leafy hull sterile1 Is a Homeotic Mutation in a Rice MADS Box Gene Affecting Rice Flower Development	To further investigate the role of OsMADS1 during rice flower development, we generated transgenic rice plants expressing altered OsMADS1 genes that contain missense mutations in the MADS domain
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	reproductive	DEP and AFO regulate reproductive habit in rice	DEP and AFO regulate reproductive habit in rice
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	leaf	Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways	leafy hull sterile1/OsMADS1, from a grass-specific subgroup of LOFSEP genes, is required for specifying a single floret on the spikelet meristem and for floret organ development, but its downstream mechanisms are unknown
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	seed	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet development	Jasmonic acid regulates spikelet development in rice	OsJAZ1 also interacts with OsMYC2, a transcription factor in the JA signalling pathway, and represses OsMYC2's role in activating OsMADS1, an E-class gene crucial to the spikelet development.
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	However, molecular mechanisms underlying interactions of OsMADS1 with other floral homeotic genes in regulating flower development remains largely elusive
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	The physical and genetic interaction of OsMADS1 and OsMADS3 is essential for floral meristem activity maintenance and organ identity specification; while OsMADS1 physically and genetically interacts with OsMADS58 in regulating floral meristem determinacy and suppressing spikelet meristem reversion
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	development	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	However, molecular mechanisms underlying interactions of OsMADS1 with other floral homeotic genes in regulating flower development remains largely elusive
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	However, molecular mechanisms underlying interactions of OsMADS1 with other floral homeotic genes in regulating flower development remains largely elusive
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	The physical and genetic interaction of OsMADS1 and OsMADS3 is essential for floral meristem activity maintenance and organ identity specification; while OsMADS1 physically and genetically interacts with OsMADS58 in regulating floral meristem determinacy and suppressing spikelet meristem reversion
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	Gene expression profiling further identified that OsMADS1 regulates expression of OsMADS17, and affects other genes involved in floral identity and hormone signaling
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	In brief, this work provides new insights about the physical and regulatory interaction network of OsMADS1 with other floral homeotic genes in rice floral organ identity specification and meristem determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	The physical and genetic interaction of OsMADS1 and OsMADS3 is essential for floral meristem activity maintenance and organ identity specification; while OsMADS1 physically and genetically interacts with OsMADS58 in regulating floral meristem determinacy and suppressing spikelet meristem reversion
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	In brief, this work provides new insights about the physical and regulatory interaction network of OsMADS1 with other floral homeotic genes in rice floral organ identity specification and meristem determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet meristem	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	The physical and genetic interaction of OsMADS1 and OsMADS3 is essential for floral meristem activity maintenance and organ identity specification; while OsMADS1 physically and genetically interacts with OsMADS58 in regulating floral meristem determinacy and suppressing spikelet meristem reversion
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral meristem	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	The physical and genetic interaction of OsMADS1 and OsMADS3 is essential for floral meristem activity maintenance and organ identity specification; while OsMADS1 physically and genetically interacts with OsMADS58 in regulating floral meristem determinacy and suppressing spikelet meristem reversion
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral organ	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	In brief, this work provides new insights about the physical and regulatory interaction network of OsMADS1 with other floral homeotic genes in rice floral organ identity specification and meristem determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower development	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower development	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	However, molecular mechanisms underlying interactions of OsMADS1 with other floral homeotic genes in regulating flower development remains largely elusive
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	organ identity	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	The physical and genetic interaction of OsMADS1 and OsMADS3 is essential for floral meristem activity maintenance and organ identity specification; while OsMADS1 physically and genetically interacts with OsMADS58 in regulating floral meristem determinacy and suppressing spikelet meristem reversion
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	organ identity	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	In brief, this work provides new insights about the physical and regulatory interaction network of OsMADS1 with other floral homeotic genes in rice floral organ identity specification and meristem determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	R protein	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	In this work, we studied the genetic interactions of OsMADS1 with B-, C-, and D-class genes along with physical interactions among their proteins, and provided some important evidence to further support the neofunctionalization of two rice C-class genes
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral meristem determinacy	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	The physical and genetic interaction of OsMADS1 and OsMADS3 is essential for floral meristem activity maintenance and organ identity specification; while OsMADS1 physically and genetically interacts with OsMADS58 in regulating floral meristem determinacy and suppressing spikelet meristem reversion
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	development	Genome-wide targets regulated by the OsMADS1 transcription factor reveals its DNA recognition properties.	OsMADS1 controls rice (Oryza sativa) floral fate and organ development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	development	Genome-wide targets regulated by the OsMADS1 transcription factor reveals its DNA recognition properties.	Overall, OsMADS1 binds to several regulatory genes and, probably in combination with other factors, controls a gene regulatory network that ensures rice floret development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	transcription factor	Genome-wide targets regulated by the OsMADS1 transcription factor reveals its DNA recognition properties.	Genome-wide targets regulated by the OsMADS1 transcription factor reveals its DNA recognition properties.
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	transcription factor	Genome-wide targets regulated by the OsMADS1 transcription factor reveals its DNA recognition properties.	Combining expression data from OsMADS1 knockdown florets with these DNA binding data, a snapshot of a gene regulatory network was deduced where targets, such as AP2/ERF and bHLH transcription factors and chromatin remodelers form nodes
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Genome-wide targets regulated by the OsMADS1 transcription factor reveals its DNA recognition properties.	OsMADS1 controls rice (Oryza sativa) floral fate and organ development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	OsMADS1 specifies the determinacy of spikelet meristem and lemma/palea identity in rice
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	development	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	However, the pathway through which OsMADS1 regulates floral organs remains elusive; here, we identified the microRNA172 (miR172) family as possible regulators downstream of OsMADS1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	Our results suggested that in rice, OsMADS1 and miR172s/AP2s formed a regulatory network involved in floral organ development, particularly the elongation of the lemma and the palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	OsMADS1 specifies the determinacy of spikelet meristem and lemma/palea identity in rice
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	spikelet meristem	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	OsMADS1 specifies the determinacy of spikelet meristem and lemma/palea identity in rice
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	Our results suggested that in rice, OsMADS1 and miR172s/AP2s formed a regulatory network involved in floral organ development, particularly the elongation of the lemma and the palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	Our results suggested that in rice, OsMADS1 and miR172s/AP2s formed a regulatory network involved in floral organ development, particularly the elongation of the lemma and the palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral organ	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	However, the pathway through which OsMADS1 regulates floral organs remains elusive; here, we identified the microRNA172 (miR172) family as possible regulators downstream of OsMADS1
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral organ	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	Our results suggested that in rice, OsMADS1 and miR172s/AP2s formed a regulatory network involved in floral organ development, particularly the elongation of the lemma and the palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	panicle	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Quantitative PCR analysis indicated that OsLG3b expression was higher during the panicle and seed development stages
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Six SNPs in the OsLG3b region led to alternative splicing, which were associated with grain length in an association analysis of candidate region
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Phylogenetic analysis and pedigree records showed that OsLG3b had been employed by breeders, but the gene still has much breeding potential for increasing grain length in indica
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	domestication	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Analysis of haplotypes and introgression regions revealed that the long-grain allele of OsLG3b might have arisen after domestication of tropical japonica and spread to subspecies indica or temperate japonica by natural crossing and artificial selection
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	domestication	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	OsLG3b is therefore a target of human selection for adaptation to tropical regions during domestication and/or improvement of rice
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	development	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Quantitative PCR analysis indicated that OsLG3b expression was higher during the panicle and seed development stages
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain length	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain length	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Six SNPs in the OsLG3b region led to alternative splicing, which were associated with grain length in an association analysis of candidate region
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain length	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Phylogenetic analysis and pedigree records showed that OsLG3b had been employed by breeders, but the gene still has much breeding potential for increasing grain length in indica
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	seed	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Quantitative PCR analysis indicated that OsLG3b expression was higher during the panicle and seed development stages
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	yield	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	breeding	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Phylogenetic analysis and pedigree records showed that OsLG3b had been employed by breeders, but the gene still has much breeding potential for increasing grain length in indica
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	seed development	Alternative<U+00A0>splicing of OsLG3b controls grain length and yield in japonica rice.	Quantitative PCR analysis indicated that OsLG3b expression was higher during the panicle and seed development stages
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	transcription factor	G-protein subunits determine grain size through interaction with MADS-domain transcription factors in rice.	The G subunits GS3 and DEP1 interact directly with the conserved keratin-like domain of MADS transcription factors, function as cofactors to enhance OsMADS1 transcriptional activity and promote the co-operative transactivation of common target genes, thereby regulating grain size and shape
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain	G-protein subunits determine grain size through interaction with MADS-domain transcription factors in rice.	The G subunits GS3 and DEP1 interact directly with the conserved keratin-like domain of MADS transcription factors, function as cofactors to enhance OsMADS1 transcriptional activity and promote the co-operative transactivation of common target genes, thereby regulating grain size and shape
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain size	G-protein subunits determine grain size through interaction with MADS-domain transcription factors in rice.	The G subunits GS3 and DEP1 interact directly with the conserved keratin-like domain of MADS transcription factors, function as cofactors to enhance OsMADS1 transcriptional activity and promote the co-operative transactivation of common target genes, thereby regulating grain size and shape
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Rice shoot and floral meristem development: An overview of developmental regulators of meristem maintenance and organ identity.	Yet, several evidences suggest the evolution of distinctive functions for some of these rice floral regulators, the occurrence of other grass species-specific factors and regulatory pathways - for example LOFSEP 'E' class genes OsMADS1 and OsMAD34 and ramosa genes
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	development	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Further linkage analysis indicated that the point mutation in the OsMADS1Olr is associated with Oat-like rice phenotype, and expression analysis of the OsMADS1 by qRT-PCR and GUS staining also indicated that it is highly expressed in flower organs as well as in the early stages of grain development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	development	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Finally, compared with Oat-like rice, OsMADS1Olr-overexpressing and OsMADS1-RNAi plants, mild phenotype of seed-specific OsMADS1-RNAi transgenic plants indicated that OsMADS1 may has has a direct regulation role in grain development and the grain phenotypes of Oat-like rice, OsMADS1Olr-overexpressing and OsMADS1-RNAi plants are majorly caused by the abnormal lemma and palea development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	flower	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Further linkage analysis indicated that the point mutation in the OsMADS1Olr is associated with Oat-like rice phenotype, and expression analysis of the OsMADS1 by qRT-PCR and GUS staining also indicated that it is highly expressed in flower organs as well as in the early stages of grain development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Further linkage analysis indicated that the point mutation in the OsMADS1Olr is associated with Oat-like rice phenotype, and expression analysis of the OsMADS1 by qRT-PCR and GUS staining also indicated that it is highly expressed in flower organs as well as in the early stages of grain development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Finally, compared with Oat-like rice, OsMADS1Olr-overexpressing and OsMADS1-RNAi plants, mild phenotype of seed-specific OsMADS1-RNAi transgenic plants indicated that OsMADS1 may has has a direct regulation role in grain development and the grain phenotypes of Oat-like rice, OsMADS1Olr-overexpressing and OsMADS1-RNAi plants are majorly caused by the abnormal lemma and palea development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Furthermore, our findings suggested that OsMADS1 mediates grain shape possibly by affecting the expression of representative genes related to grain shape regulation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Thus, this study not only revealed that OsMADS1 plays a vital role in regulating grain shape of rice but also highlighted the importance and value of OsMADS1 to improve the quality and yield of rice by molecular breeding
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	map-based cloning	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	By map-based cloning, we discovered that Oat-like rice harbors a novel allele of OsMADS1 gene (OsMADS1Olr), which has a spontaneous point mutation that causes the substitution of an amino acid that is highly conserved in the MADS-box domain of the MADS-box family
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	yield	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Thus, this study not only revealed that OsMADS1 plays a vital role in regulating grain shape of rice but also highlighted the importance and value of OsMADS1 to improve the quality and yield of rice by molecular breeding
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	breeding	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Thus, this study not only revealed that OsMADS1 plays a vital role in regulating grain shape of rice but also highlighted the importance and value of OsMADS1 to improve the quality and yield of rice by molecular breeding
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Finally, compared with Oat-like rice, OsMADS1Olr-overexpressing and OsMADS1-RNAi plants, mild phenotype of seed-specific OsMADS1-RNAi transgenic plants indicated that OsMADS1 may has has a direct regulation role in grain development and the grain phenotypes of Oat-like rice, OsMADS1Olr-overexpressing and OsMADS1-RNAi plants are majorly caused by the abnormal lemma and palea development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	lemma	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Finally, compared with Oat-like rice, OsMADS1Olr-overexpressing and OsMADS1-RNAi plants, mild phenotype of seed-specific OsMADS1-RNAi transgenic plants indicated that OsMADS1 may has has a direct regulation role in grain development and the grain phenotypes of Oat-like rice, OsMADS1Olr-overexpressing and OsMADS1-RNAi plants are majorly caused by the abnormal lemma and palea development
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	quality	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Thus, this study not only revealed that OsMADS1 plays a vital role in regulating grain shape of rice but also highlighted the importance and value of OsMADS1 to improve the quality and yield of rice by molecular breeding
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain shape	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain shape	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Furthermore, our findings suggested that OsMADS1 mediates grain shape possibly by affecting the expression of representative genes related to grain shape regulation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	grain shape	Characterization of the 'Oat-Like Rice' Caused by a Novel Allele OsMADS1 Olr Reveals Vital Importance of OsMADS1 in Regulating Grain Shape in Oryza sativa L	Thus, this study not only revealed that OsMADS1 plays a vital role in regulating grain shape of rice but also highlighted the importance and value of OsMADS1 to improve the quality and yield of rice by molecular breeding
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	development	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	A new, stable, null mutant of OsMADS1 generated by homologous recombination-based gene targeting in an indica rice confirms its regulatory role for floral meristem identity, its determinate development and floral organ differentiation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	development	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	vegetative	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	We also noticed striking instances of floral reversion to inflorescence and vegetative states which has not been reported for other mutant alleles of OsMADS1 and further reinforces the role of OsMADS1 in controlling floral meristem determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	A new, stable, null mutant of OsMADS1 generated by homologous recombination-based gene targeting in an indica rice confirms its regulatory role for floral meristem identity, its determinate development and floral organ differentiation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	We also noticed striking instances of floral reversion to inflorescence and vegetative states which has not been reported for other mutant alleles of OsMADS1 and further reinforces the role of OsMADS1 in controlling floral meristem determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	A new, stable, null mutant of OsMADS1 generated by homologous recombination-based gene targeting in an indica rice confirms its regulatory role for floral meristem identity, its determinate development and floral organ differentiation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	We also noticed striking instances of floral reversion to inflorescence and vegetative states which has not been reported for other mutant alleles of OsMADS1 and further reinforces the role of OsMADS1 in controlling floral meristem determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	inflorescence	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	We also noticed striking instances of floral reversion to inflorescence and vegetative states which has not been reported for other mutant alleles of OsMADS1 and further reinforces the role of OsMADS1 in controlling floral meristem determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	A new, stable, null mutant of OsMADS1 generated by homologous recombination-based gene targeting in an indica rice confirms its regulatory role for floral meristem identity, its determinate development and floral organ differentiation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	We also noticed striking instances of floral reversion to inflorescence and vegetative states which has not been reported for other mutant alleles of OsMADS1 and further reinforces the role of OsMADS1 in controlling floral meristem determinacy
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral meristem	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	palea	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral organ	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	A new, stable, null mutant of OsMADS1 generated by homologous recombination-based gene targeting in an indica rice confirms its regulatory role for floral meristem identity, its determinate development and floral organ differentiation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	ovule	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Our data suggest, OsMADS1 commits and maintains determinate floret development by regulating floral meristem termination, carpel and ovule differentiation genes (OsMADS58, OsMADS13) while its modulation of genes such as OsMADS15, OsIG1 and OsMADS32 could be relevant in the differentiation and development of palea
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	homologous recombination	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	homologous recombination	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	A new, stable, null mutant of OsMADS1 generated by homologous recombination-based gene targeting in an indica rice confirms its regulatory role for floral meristem identity, its determinate development and floral organ differentiation
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	homologous recombination	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	In this study, we generated an OsMADS1 null mutant by homologous recombination-mediated gene targeting by inserting a selectable marker gene (hpt) in OsMADS1 and replacing parts of its cis-regulatory and coding sequences
OsLG3b|OsMADS1|LHS1|AFO	Os03g0215400	LOC_Os03g11614	floral meristem determinacy	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting	We also noticed striking instances of floral reversion to inflorescence and vegetative states which has not been reported for other mutant alleles of OsMADS1 and further reinforces the role of OsMADS1 in controlling floral meristem determinacy
OsLHY	Os06g0728700	LOC_Os06g51260	development	The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing	 OsCCA1 also regulates IPA1 expression to mediate panicle and grain development
OsLHY	Os06g0728700	LOC_Os06g51260	panicle	The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing	 OsCCA1 also regulates IPA1 expression to mediate panicle and grain development
OsLHY	Os06g0728700	LOC_Os06g51260	grain	The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing	 OsCCA1 also regulates IPA1 expression to mediate panicle and grain development
OsLHY	Os06g0728700	LOC_Os06g51260	tiller	The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing	 Downregulating and overexpressing OsCCA1 increases and reduces tiller numbers, respectively, whereas manipulating PSEUDORESPONSE REGULATOR1 (OsPPR1) expression results in the opposite effects
OsLHY	Os06g0728700	LOC_Os06g51260	tiller	The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing	 Genetic analyses using double mutants and overexpression in the mutants show that OsTB1, D14, and IPA1 act downstream of OsCCA1 Sugars repress OsCCA1 expression in roots and tiller buds to promote tiller-bud outgrowth
OsLHY	Os06g0728700	LOC_Os06g51260	tiller number	The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing	 Downregulating and overexpressing OsCCA1 increases and reduces tiller numbers, respectively, whereas manipulating PSEUDORESPONSE REGULATOR1 (OsPPR1) expression results in the opposite effects
OsLHY	Os06g0728700	LOC_Os06g51260	heading date	Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice	 Additionally, the dual function of OsLHY entirely relied on Hd1, as the double mutant oslhy hd1 showed the same heading date with hd1 under about 11
OsLHY	Os06g0728700	LOC_Os06g51260	flowering	Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice	Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice
OsLHY	Os06g0728700	LOC_Os06g51260	flowering	Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice	 By MutMap technique, we identified the candidate gene OsLHY from a later flowering mutant lem1 and further confirmed it through genetic complementation, RNA interference knockdown, and CRISPR/Cas9-knockout
OsLHY	Os06g0728700	LOC_Os06g51260	flowering	mediated pathways in rice (Oryza sativa L.).	 Here we showed that CRISPR/Cas9-engineered mutations in OsLHY caused late flowering in rice only under natural long-day (nLD) and short-day (nSD) conditions, but not artificial SD (10 h light/14 h dark) conditions
OsLHY	Os06g0728700	LOC_Os06g51260	flowering	mediated pathways in rice (Oryza sativa L.).	 Furthermore, the expression of the flowering activators Ehd1, Hd3a and RFT1 was down-regulated and flowering repressors Hd1 and Ghd7 was up-regulated in the oslhy mutant under LD conditions
OsLHY	Os06g0728700	LOC_Os06g51260	flowering	mediated pathways in rice (Oryza sativa L.).	 These results suggested that the OsLHY can promote rice flowering mainly through regulating Hd1 and Ehd1
OsLHY	Os06g0728700	LOC_Os06g51260	transcription factor	Crosstalk between the Circadian Clock and Histone Methylation.	 SDG724 encodes a histone H3K36 methyltransferase, and OsLHY is a vital circadian rhythm transcription factor
OsLHY	Os06g0728700	LOC_Os06g51260	heading date	Crosstalk between the Circadian Clock and Histone Methylation.	 Previously, we reported that SDG724 and OsLHY are two rice heading date regulators in rice
OsLIP5	Os03g0655400	LOC_Os03g45280	resistance	LIP5, a MVB biogenesis regulator, is required for rice growth.	 Here we report that rice OsLIP5 gene could fully restore both the disease resistance and salt tolerance of the Arabidopsis oslip5 mutant plants to the wild-type levels
OsLIP5	Os03g0655400	LOC_Os03g45280	disease	LIP5, a MVB biogenesis regulator, is required for rice growth.	 Here we report that rice OsLIP5 gene could fully restore both the disease resistance and salt tolerance of the Arabidopsis oslip5 mutant plants to the wild-type levels
OsLIP5	Os03g0655400	LOC_Os03g45280	disease resistance	LIP5, a MVB biogenesis regulator, is required for rice growth.	 Here we report that rice OsLIP5 gene could fully restore both the disease resistance and salt tolerance of the Arabidopsis oslip5 mutant plants to the wild-type levels
OsLIP5	Os03g0655400	LOC_Os03g45280	salt	LIP5, a MVB biogenesis regulator, is required for rice growth.	 Here we report that rice OsLIP5 gene could fully restore both the disease resistance and salt tolerance of the Arabidopsis oslip5 mutant plants to the wild-type levels
OsLIP5	Os03g0655400	LOC_Os03g45280	tolerance	LIP5, a MVB biogenesis regulator, is required for rice growth.	 Here we report that rice OsLIP5 gene could fully restore both the disease resistance and salt tolerance of the Arabidopsis oslip5 mutant plants to the wild-type levels
OsLIP5	Os03g0655400	LOC_Os03g45280	salt tolerance	LIP5, a MVB biogenesis regulator, is required for rice growth.	 Here we report that rice OsLIP5 gene could fully restore both the disease resistance and salt tolerance of the Arabidopsis oslip5 mutant plants to the wild-type levels
OsLIP5	Os03g0655400	LOC_Os03g45280	flowering	LIP5, a MVB biogenesis regulator, is required for rice growth.	 Unlike Arabidopsis atlip5 mutants, rice oslip5 mutants were severely stunted, developed necrotic lesions and all died before flowering
OsLKP2	Os02g0150800	LOC_Os02g05700	leaf	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	 Under drought conditions, total wax loads on the leaf surface increased by approximately 10% in oslkp2-1 and oslkp2-2 compared to the wild type, and the transcript levels of cuticular wax biosynthesis genes were upregulated in the oslkp2 mutants
OsLKP2	Os02g0150800	LOC_Os02g05700	drought	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	 OsLKP2 knockdown (oslkp2-1) and knockout (oslkp2-2) mutants exhibited enhanced drought tolerance
OsLKP2	Os02g0150800	LOC_Os02g05700	drought	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	 Under drought conditions, total wax loads on the leaf surface increased by approximately 10% in oslkp2-1 and oslkp2-2 compared to the wild type, and the transcript levels of cuticular wax biosynthesis genes were upregulated in the oslkp2 mutants
OsLKP2	Os02g0150800	LOC_Os02g05700	stress	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	 Among ZEITLUPE family genes, OsLKP2 expression specifically increased under dehydration stress
OsLKP2	Os02g0150800	LOC_Os02g05700	tolerance	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	 OsLKP2 knockdown (oslkp2-1) and knockout (oslkp2-2) mutants exhibited enhanced drought tolerance
OsLKP2	Os02g0150800	LOC_Os02g05700	nucleus	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	 Yeast two-hybrid, bimolecular fluorescence complementation, and coimmunoprecipitation assays revealed that OsLKP2 interacts with GIGANTEA (OsGI) in the nucleus
OsLKP2	Os02g0150800	LOC_Os02g05700	drought tolerance	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	 OsLKP2 knockdown (oslkp2-1) and knockout (oslkp2-2) mutants exhibited enhanced drought tolerance
OsLKP2	Os02g0150800	LOC_Os02g05700	cuticular wax biosynthesis	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	 Under drought conditions, total wax loads on the leaf surface increased by approximately 10% in oslkp2-1 and oslkp2-2 compared to the wild type, and the transcript levels of cuticular wax biosynthesis genes were upregulated in the oslkp2 mutants
OsLKP2	Os02g0150800	LOC_Os02g05700	wax biosynthesis	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	 Under drought conditions, total wax loads on the leaf surface increased by approximately 10% in oslkp2-1 and oslkp2-2 compared to the wild type, and the transcript levels of cuticular wax biosynthesis genes were upregulated in the oslkp2 mutants
OsLKR|SDH	Os02g0783700|Os02g0783625	LOC_Os02g54254	endosperm	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	OsLKR/SDH was highly expressed in the aleurone and subaleurone layers of the endosperm
OsLKR|SDH	Os02g0783700|Os02g0783625	LOC_Os02g54254	transcription factor	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	Here, we show that OsLKR/SDH is directly regulated by major transcriptional regulators of seed storage protein (SSP) genes: the basic leucine zipper (bZIP) transcription factor (TF), RISBZ1, and the DNA-binding with one finger (DOF) transcription factor, RPBF
OsLKR|SDH	Os02g0783700|Os02g0783625	LOC_Os02g54254	transcription factor	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	This result was in contrast to the fact that a significant reduction of SSP was observed only when these transcription factors were simultaneously reduced, suggesting that RISBZ1 and RPBF regulate SSP genes and OsLKR/SDH with high and limited redundancy, respectively
OsLKR|SDH	Os02g0783700|Os02g0783625	LOC_Os02g54254	seed	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	L), a bifunctional OsLKR/SDH is predominantly present in seeds
OsLKR|SDH	Os02g0783700|Os02g0783625	LOC_Os02g54254	seed	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	Here, we show that OsLKR/SDH is directly regulated by major transcriptional regulators of seed storage protein (SSP) genes: the basic leucine zipper (bZIP) transcription factor (TF), RISBZ1, and the DNA-binding with one finger (DOF) transcription factor, RPBF
OsLKR|SDH	Os02g0783700|Os02g0783625	LOC_Os02g54254	grain	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	Reducing either RISBZ1 or RPBF decreased OsLKR/SDH levels, resulting in an increase in free lysine content in rice grain
OsLLB|OsMTS1	Os07g0247100	LOC_Os07g14350	grain	Premature leaf senescence 3, encoding a methyltransferase, is required for melatonin biosynthesis in rice.	Moreover, overexpression of OsMTS1 in the wild-type plant increased the grain yield by 15
OsLLB|OsMTS1	Os07g0247100	LOC_Os07g14350	grain yield	Premature leaf senescence 3, encoding a methyltransferase, is required for melatonin biosynthesis in rice.	Moreover, overexpression of OsMTS1 in the wild-type plant increased the grain yield by 15
OsLLB|OsMTS1	Os07g0247100	LOC_Os07g14350	yield	Premature leaf senescence 3, encoding a methyltransferase, is required for melatonin biosynthesis in rice.	Moreover, overexpression of OsMTS1 in the wild-type plant increased the grain yield by 15
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	immune response	OsLMP1, Encoding a Deubiquitinase, Regulates the Immune Response in Rice.	 Furthermore, OsLMP1 epigenetically modifies SA synthetic pathway genes by deubiquitinating H(2)B and regulates the immune response in rice
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	immune response	OsLMP1, Encoding a Deubiquitinase, Regulates the Immune Response in Rice.	 In summary, this study deepens our understanding of the function of OsLMP1 in the plant immune response and provides further insight into the relationship between plants and pathogenic microorganisms
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	sa	OsLMP1, Encoding a Deubiquitinase, Regulates the Immune Response in Rice.	 Furthermore, OsLMP1 epigenetically modifies SA synthetic pathway genes by deubiquitinating H(2)B and regulates the immune response in rice
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	SA	OsLMP1, Encoding a Deubiquitinase, Regulates the Immune Response in Rice.	 Furthermore, OsLMP1 epigenetically modifies SA synthetic pathway genes by deubiquitinating H(2)B and regulates the immune response in rice
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	 sa 	OsLMP1, Encoding a Deubiquitinase, Regulates the Immune Response in Rice.	 Furthermore, OsLMP1 epigenetically modifies SA synthetic pathway genes by deubiquitinating H(2)B and regulates the immune response in rice
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	leaf	Ubiquitin-Specific Protease 2 (OsUBP2) Negatively Regulates Cell Death and Disease Resistance in Rice.	 The mutation of OsUBP2 was shown to result in reactive oxygen species (ROS) accumulation, chloroplast structural defects, and programmed cell death, while the overexpression of OsUBP2 weakened rice resistance to leaf blast
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	chloroplast	Ubiquitin-Specific Protease 2 (OsUBP2) Negatively Regulates Cell Death and Disease Resistance in Rice.	 The mutation of OsUBP2 was shown to result in reactive oxygen species (ROS) accumulation, chloroplast structural defects, and programmed cell death, while the overexpression of OsUBP2 weakened rice resistance to leaf blast
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	resistance	Ubiquitin-Specific Protease 2 (OsUBP2) Negatively Regulates Cell Death and Disease Resistance in Rice.	 The mutation of OsUBP2 was shown to result in reactive oxygen species (ROS) accumulation, chloroplast structural defects, and programmed cell death, while the overexpression of OsUBP2 weakened rice resistance to leaf blast
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	blast	Ubiquitin-Specific Protease 2 (OsUBP2) Negatively Regulates Cell Death and Disease Resistance in Rice.	 The mutation of OsUBP2 was shown to result in reactive oxygen species (ROS) accumulation, chloroplast structural defects, and programmed cell death, while the overexpression of OsUBP2 weakened rice resistance to leaf blast
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	cell death	Ubiquitin-Specific Protease 2 (OsUBP2) Negatively Regulates Cell Death and Disease Resistance in Rice.	 The mutation of OsUBP2 was shown to result in reactive oxygen species (ROS) accumulation, chloroplast structural defects, and programmed cell death, while the overexpression of OsUBP2 weakened rice resistance to leaf blast
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	reactive oxygen species	Ubiquitin-Specific Protease 2 (OsUBP2) Negatively Regulates Cell Death and Disease Resistance in Rice.	 The mutation of OsUBP2 was shown to result in reactive oxygen species (ROS) accumulation, chloroplast structural defects, and programmed cell death, while the overexpression of OsUBP2 weakened rice resistance to leaf blast
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	programmed cell death	Ubiquitin-Specific Protease 2 (OsUBP2) Negatively Regulates Cell Death and Disease Resistance in Rice.	 The mutation of OsUBP2 was shown to result in reactive oxygen species (ROS) accumulation, chloroplast structural defects, and programmed cell death, while the overexpression of OsUBP2 weakened rice resistance to leaf blast
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	leaf	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 LMM22 interacts with SPOTTED LEAF 35 (SPL35), a coupling of ubiquitin conjugation to ER degradation domain-containing protein that is known to participate in ubiquitination and the regulation of cell death and disease response in rice
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	resistance	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 These data therefore improve our understanding of the function of UBP in rice innate immune responses by demonstrating that LMM22 functions as a critical regulator of SPL35 in cell death and disease resistance
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	disease	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 LMM22 interacts with SPOTTED LEAF 35 (SPL35), a coupling of ubiquitin conjugation to ER degradation domain-containing protein that is known to participate in ubiquitination and the regulation of cell death and disease response in rice
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	disease	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 These data therefore improve our understanding of the function of UBP in rice innate immune responses by demonstrating that LMM22 functions as a critical regulator of SPL35 in cell death and disease resistance
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	disease resistance	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 These data therefore improve our understanding of the function of UBP in rice innate immune responses by demonstrating that LMM22 functions as a critical regulator of SPL35 in cell death and disease resistance
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	cell death	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 Both dysfunction and overexpression of LMM22 gave rise to the hypersensitive response-like cell death, reactive oxygen species bursts, and activated defence responses
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	cell death	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 LMM22 interacts with SPOTTED LEAF 35 (SPL35), a coupling of ubiquitin conjugation to ER degradation domain-containing protein that is known to participate in ubiquitination and the regulation of cell death and disease response in rice
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	cell death	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 These data therefore improve our understanding of the function of UBP in rice innate immune responses by demonstrating that LMM22 functions as a critical regulator of SPL35 in cell death and disease resistance
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	immune response	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 These data therefore improve our understanding of the function of UBP in rice innate immune responses by demonstrating that LMM22 functions as a critical regulator of SPL35 in cell death and disease resistance
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	Ubiquitin	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 LMM22 interacts with SPOTTED LEAF 35 (SPL35), a coupling of ubiquitin conjugation to ER degradation domain-containing protein that is known to participate in ubiquitination and the regulation of cell death and disease response in rice
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	reactive oxygen species	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 Both dysfunction and overexpression of LMM22 gave rise to the hypersensitive response-like cell death, reactive oxygen species bursts, and activated defence responses
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	lesion	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 Here, we identified a rice lesion mimic mutant (LMM) and cloned its causative gene, LMM22
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	defence	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 Both dysfunction and overexpression of LMM22 gave rise to the hypersensitive response-like cell death, reactive oxygen species bursts, and activated defence responses
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	defence response	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 Both dysfunction and overexpression of LMM22 gave rise to the hypersensitive response-like cell death, reactive oxygen species bursts, and activated defence responses
OsLMP1|OsUBP2|LMM22	Os09g0505100	LOC_Os09g32740	lesion mimic	A ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	 Here, we identified a rice lesion mimic mutant (LMM) and cloned its causative gene, LMM22
OsLMS	Os02g0639000	LOC_Os02g42600	senescence	Mutation in OsLMS, a gene encoding a protein with two double-stranded RNA binding motifs, causes lesion mimic phenotype and early senescence in rice (Oryza sativa L.)	Mutation in OsLMS, a gene encoding a protein with two double-stranded RNA binding motifs, causes lesion mimic phenotype and early senescence in rice (Oryza sativa L.)
OsLOGL5	Os03g0857900	LOC_Os03g64070	nitrogen	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	Conversely, mutations at the 3'-end of OsLOGL5 CDS resulted in normal rice plant morphology but with increased grain yield under well-watered, drought, normal nitrogen, and low nitrogen field conditions at multiple geographical locations
OsLOGL5	Os03g0857900	LOC_Os03g64070	grain	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	Conversely, mutations at the 3'-end of OsLOGL5 CDS resulted in normal rice plant morphology but with increased grain yield under well-watered, drought, normal nitrogen, and low nitrogen field conditions at multiple geographical locations
OsLOGL5	Os03g0857900	LOC_Os03g64070	grain	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	All OsLOGL5-edited plants significantly increased seed setting rate, total grain numbers, full-filled grain numbers per panicle, and thousand seed weight under drought conditions, suggesting that OsLOGL5 is likely involved in the regulation of both seed development and grain filling processes
OsLOGL5	Os03g0857900	LOC_Os03g64070	development	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	All OsLOGL5-edited plants significantly increased seed setting rate, total grain numbers, full-filled grain numbers per panicle, and thousand seed weight under drought conditions, suggesting that OsLOGL5 is likely involved in the regulation of both seed development and grain filling processes
OsLOGL5	Os03g0857900	LOC_Os03g64070	grain number	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	All OsLOGL5-edited plants significantly increased seed setting rate, total grain numbers, full-filled grain numbers per panicle, and thousand seed weight under drought conditions, suggesting that OsLOGL5 is likely involved in the regulation of both seed development and grain filling processes
OsLOGL5	Os03g0857900	LOC_Os03g64070	seed	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	All OsLOGL5-edited plants significantly increased seed setting rate, total grain numbers, full-filled grain numbers per panicle, and thousand seed weight under drought conditions, suggesting that OsLOGL5 is likely involved in the regulation of both seed development and grain filling processes
OsLOGL5	Os03g0857900	LOC_Os03g64070	drought	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	All OsLOGL5-edited plants significantly increased seed setting rate, total grain numbers, full-filled grain numbers per panicle, and thousand seed weight under drought conditions, suggesting that OsLOGL5 is likely involved in the regulation of both seed development and grain filling processes
OsLOGL5	Os03g0857900	LOC_Os03g64070	grain yield	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	Conversely, mutations at the 3'-end of OsLOGL5 CDS resulted in normal rice plant morphology but with increased grain yield under well-watered, drought, normal nitrogen, and low nitrogen field conditions at multiple geographical locations
OsLOGL5	Os03g0857900	LOC_Os03g64070	yield	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	Conversely, mutations at the 3'-end of OsLOGL5 CDS resulted in normal rice plant morphology but with increased grain yield under well-watered, drought, normal nitrogen, and low nitrogen field conditions at multiple geographical locations
OsLOGL5	Os03g0857900	LOC_Os03g64070	yield	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	Our results indicate that the C-terminal end of OsLOGL5 protein plays an important role in regulating rice yield improvement under different abiotic stress conditions, and OsLOGL5 is important for rice yield enhancement and stability
OsLOGL5	Os03g0857900	LOC_Os03g64070	abiotic stress	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	Our results indicate that the C-terminal end of OsLOGL5 protein plays an important role in regulating rice yield improvement under different abiotic stress conditions, and OsLOGL5 is important for rice yield enhancement and stability
OsLOGL5	Os03g0857900	LOC_Os03g64070	stress	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	Our results indicate that the C-terminal end of OsLOGL5 protein plays an important role in regulating rice yield improvement under different abiotic stress conditions, and OsLOGL5 is important for rice yield enhancement and stability
OsLOGL5	Os03g0857900	LOC_Os03g64070	biotic stress	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	Our results indicate that the C-terminal end of OsLOGL5 protein plays an important role in regulating rice yield improvement under different abiotic stress conditions, and OsLOGL5 is important for rice yield enhancement and stability
OsLOGL5	Os03g0857900	LOC_Os03g64070	seed weight	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	All OsLOGL5-edited plants significantly increased seed setting rate, total grain numbers, full-filled grain numbers per panicle, and thousand seed weight under drought conditions, suggesting that OsLOGL5 is likely involved in the regulation of both seed development and grain filling processes
OsLOGL5	Os03g0857900	LOC_Os03g64070	grain filling	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	All OsLOGL5-edited plants significantly increased seed setting rate, total grain numbers, full-filled grain numbers per panicle, and thousand seed weight under drought conditions, suggesting that OsLOGL5 is likely involved in the regulation of both seed development and grain filling processes
OsLOGL5	Os03g0857900	LOC_Os03g64070	seed development	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	All OsLOGL5-edited plants significantly increased seed setting rate, total grain numbers, full-filled grain numbers per panicle, and thousand seed weight under drought conditions, suggesting that OsLOGL5 is likely involved in the regulation of both seed development and grain filling processes
OsLOL1	Os12g0611000	LOC_Os12g41700	growth	Transgenic tobacco with rice zinc-finger gene OsLOL2 exhibits an enhanced resistance against bacterial-wilt	Rice LSD1-like (OsLOL1) gene was involved in regulation of cell death and OsLOL 2 (rice zinc-finger gene) has been reported to regulate plant growth and disease resistance in plants
OsLOL1	Os12g0611000	LOC_Os12g41700	cell death	Transgenic tobacco with rice zinc-finger gene OsLOL2 exhibits an enhanced resistance against bacterial-wilt	Rice LSD1-like (OsLOL1) gene was involved in regulation of cell death and OsLOL 2 (rice zinc-finger gene) has been reported to regulate plant growth and disease resistance in plants
OsLOL1	Os12g0611000	LOC_Os12g41700	disease	Transgenic tobacco with rice zinc-finger gene OsLOL2 exhibits an enhanced resistance against bacterial-wilt	Rice LSD1-like (OsLOL1) gene was involved in regulation of cell death and OsLOL 2 (rice zinc-finger gene) has been reported to regulate plant growth and disease resistance in plants
OsLOL1	Os12g0611000	LOC_Os12g41700	disease resistance	Transgenic tobacco with rice zinc-finger gene OsLOL2 exhibits an enhanced resistance against bacterial-wilt	Rice LSD1-like (OsLOL1) gene was involved in regulation of cell death and OsLOL 2 (rice zinc-finger gene) has been reported to regulate plant growth and disease resistance in plants
OsLOL1	Os12g0611000	LOC_Os12g41700	seed germination	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa
OsLOL1	Os12g0611000	LOC_Os12g41700	seed	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa
OsLOL1	Os12g0611000	LOC_Os12g41700	gibberellin biosynthesis	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa
OsLOL2	Os01g0612700	LOC_Os01g42710	disease resistance	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	These data suggest that OsLOL2 is involved in rice growth and disease resistance
OsLOL2	Os01g0612700	LOC_Os01g42710	disease resistance	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance
OsLOL2	Os01g0612700	LOC_Os01g42710	dwarf	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	Transgenic rice lines carrying the antisense strand of OsLOL2 with decreased expression of OsLOL2 had dwarf phenotypes, and the dwarfism could be restored by exogenous GA(3) treatment, suggesting that the dwarfism was the result of a deficiency in bioactive gibberellin (GA)
OsLOL2	Os01g0612700	LOC_Os01g42710	disease	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	These data suggest that OsLOL2 is involved in rice growth and disease resistance
OsLOL2	Os01g0612700	LOC_Os01g42710	disease	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance
OsLOL2	Os01g0612700	LOC_Os01g42710	blight	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	Sense transgenic lines with increased expression of OsLOL2 were more resistant to rice bacterial blight, while antisense transgenic lines were less resistant to rice bacterial blight
OsLOL2	Os01g0612700	LOC_Os01g42710	bacterial blight	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	Sense transgenic lines with increased expression of OsLOL2 were more resistant to rice bacterial blight, while antisense transgenic lines were less resistant to rice bacterial blight
OsLOL2	Os01g0612700	LOC_Os01g42710	gibberellin	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	Transgenic rice lines carrying the antisense strand of OsLOL2 with decreased expression of OsLOL2 had dwarf phenotypes, and the dwarfism could be restored by exogenous GA(3) treatment, suggesting that the dwarfism was the result of a deficiency in bioactive gibberellin (GA)
OsLOL2	Os01g0612700	LOC_Os01g42710	resistant	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	Sense transgenic lines with increased expression of OsLOL2 were more resistant to rice bacterial blight, while antisense transgenic lines were less resistant to rice bacterial blight
OsLOL2	Os01g0612700	LOC_Os01g42710	growth	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	These data suggest that OsLOL2 is involved in rice growth and disease resistance
OsLOL2	Os01g0612700	LOC_Os01g42710	growth	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance
OsLOL5	None	None	growth	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	Transgenic Arabidopsis plants overexpressing OsLOL5 grew well in the presence ofboth NaCl and NaHCO3 treatments, whereas wild-type plants exhibited chlorosis, stunted growth phenotype, and even death
OsLOL5	None	None	shoot	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	Transgenic rice overexpressing OsLOL5 exhibited stronger resistance than NT under NaHCO3 treatment, as demonstrated by its greater shoot length, and fresh weight
OsLOL5	None	None	resistance	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	Transgenic rice overexpressing OsLOL5 exhibited stronger resistance than NT under NaHCO3 treatment, as demonstrated by its greater shoot length, and fresh weight
OsLOL5	None	None	resistance	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	These findings illustrated that OsLOL5 overexpression enhanced yeast resistance for SA stress through active oxygen species
OsLOL5	None	None	alkaline tolerance	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.
OsLOL5	None	None	oxidative stress	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The present study further revealed that OsLOL5 ZFP could regulate oxidative stress function, but could also provide a basis for salt-resistant rice strains
OsLOL5	None	None	salinity	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The results suggested that OsLOL5 improved SA tolerance in plants, and regulated oxidative and salinity stress retardation via the active oxygen detoxification pathway
OsLOL5	None	None	tolerance	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.
OsLOL5	None	None	tolerance	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	Overexpression of OsLOL5 in yeast resulted in SA tolerance at significant level
OsLOL5	None	None	tolerance	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The results suggested that OsLOL5 improved SA tolerance in plants, and regulated oxidative and salinity stress retardation via the active oxygen detoxification pathway
OsLOL5	None	None	oxidative	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The results suggested that OsLOL5 improved SA tolerance in plants, and regulated oxidative and salinity stress retardation via the active oxygen detoxification pathway
OsLOL5	None	None	oxidative	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The present study further revealed that OsLOL5 ZFP could regulate oxidative stress function, but could also provide a basis for salt-resistant rice strains
OsLOL5	None	None	salinity stress	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The results suggested that OsLOL5 improved SA tolerance in plants, and regulated oxidative and salinity stress retardation via the active oxygen detoxification pathway
OsLOL5	None	None	stress	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The results suggested that OsLOL5 improved SA tolerance in plants, and regulated oxidative and salinity stress retardation via the active oxygen detoxification pathway
OsLOL5	None	None	stress	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	These findings illustrated that OsLOL5 overexpression enhanced yeast resistance for SA stress through active oxygen species
OsLOL5	None	None	stress	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The present study further revealed that OsLOL5 ZFP could regulate oxidative stress function, but could also provide a basis for salt-resistant rice strains
OsLOL5	None	None	nucleus	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	OsLOL5 was located in the nucleus as evidenced by the bombardment of onion epidermal cells
OsLOL5	None	None	sa	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	Overexpression of OsLOL5 in yeast resulted in SA tolerance at significant level
OsLOL5	None	None	sa	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The results suggested that OsLOL5 improved SA tolerance in plants, and regulated oxidative and salinity stress retardation via the active oxygen detoxification pathway
OsLOL5	None	None	sa	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	These findings illustrated that OsLOL5 overexpression enhanced yeast resistance for SA stress through active oxygen species
OsLOL5	None	None	SA	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	Overexpression of OsLOL5 in yeast resulted in SA tolerance at significant level
OsLOL5	None	None	SA	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	The results suggested that OsLOL5 improved SA tolerance in plants, and regulated oxidative and salinity stress retardation via the active oxygen detoxification pathway
OsLOL5	None	None	SA	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	These findings illustrated that OsLOL5 overexpression enhanced yeast resistance for SA stress through active oxygen species
OsLon1	Os09g0533400	LOC_Os09g36300	leaf	Molecular cloning and expression of a cDNA encoding Lon protease from rice (Oryza sativa)	Tissue expression pattern analysis revealed that OsLon1 was highly expressed in young leaves, mature leaves, and leaf sheaths but only weakly in young roots, mature roots, and young panicles
OsLon1	Os09g0533400	LOC_Os09g36300	sheath	Molecular cloning and expression of a cDNA encoding Lon protease from rice (Oryza sativa)	Tissue expression pattern analysis revealed that OsLon1 was highly expressed in young leaves, mature leaves, and leaf sheaths but only weakly in young roots, mature roots, and young panicles
OsLon1	Os09g0533400	LOC_Os09g36300	panicle	Molecular cloning and expression of a cDNA encoding Lon protease from rice (Oryza sativa)	Tissue expression pattern analysis revealed that OsLon1 was highly expressed in young leaves, mature leaves, and leaf sheaths but only weakly in young roots, mature roots, and young panicles
OsLon1	Os09g0533400	LOC_Os09g36300	root	Molecular cloning and expression of a cDNA encoding Lon protease from rice (Oryza sativa)	Tissue expression pattern analysis revealed that OsLon1 was highly expressed in young leaves, mature leaves, and leaf sheaths but only weakly in young roots, mature roots, and young panicles
OsLOX1	Os03g0700700	LOC_Os03g49380	brown planthopper	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	OsLOX1 transcripts were detected at low abundance in immature seeds and newly germinated seedlings, but accumulate rapidly and transiently in response to wounding or brown planthopper (BPH) attack, reaching a peak 3 h after wounding and 6 h after insect feeding
OsLOX1	Os03g0700700	LOC_Os03g49380	jasmonic	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	In all of the antisense lines and more than half of the sense lines the expression levels of OsLOX1, the levels of enzyme activity, and the levels of the endogenous OsLOX1 products (jasmonic acid, (Z)-3-hexenal and colneleic acid) at 6, 48, and 48 h after BPH feeding respectively, were below the levels found in non-transgenic control plants; yet, the levels in the remaining sense transformants were enhanced relative to controls
OsLOX1	Os03g0700700	LOC_Os03g49380	jasmonic acid	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	In all of the antisense lines and more than half of the sense lines the expression levels of OsLOX1, the levels of enzyme activity, and the levels of the endogenous OsLOX1 products (jasmonic acid, (Z)-3-hexenal and colneleic acid) at 6, 48, and 48 h after BPH feeding respectively, were below the levels found in non-transgenic control plants; yet, the levels in the remaining sense transformants were enhanced relative to controls
OsLOX1	Os03g0700700	LOC_Os03g49380	flower	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	We produced transgenic rice lines carrying either sense or antisense constructs under the control of a cauliflower mosaic virus 35S promoter, and these rice lines showed altered OsLOX1 activity
OsLOX1	Os03g0700700	LOC_Os03g49380	insect	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	OsLOX1 transcripts were detected at low abundance in immature seeds and newly germinated seedlings, but accumulate rapidly and transiently in response to wounding or brown planthopper (BPH) attack, reaching a peak 3 h after wounding and 6 h after insect feeding
OsLOX1	Os03g0700700	LOC_Os03g49380	resistant	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	Transformants with a lower level of OsLOX1 expression were less able to tolerate BPH attack, while those with enhanced OsLOX1 expression were more resistant
OsLOX1	Os03g0700700	LOC_Os03g49380	seedling	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	OsLOX1 transcripts were detected at low abundance in immature seeds and newly germinated seedlings, but accumulate rapidly and transiently in response to wounding or brown planthopper (BPH) attack, reaching a peak 3 h after wounding and 6 h after insect feeding
OsLOX1	Os03g0700700	LOC_Os03g49380	seed	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	OsLOX1 is a novel full-length cDNA isolated from developing rice seeds
OsLOX1	Os03g0700700	LOC_Os03g49380	seed	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	OsLOX1 transcripts were detected at low abundance in immature seeds and newly germinated seedlings, but accumulate rapidly and transiently in response to wounding or brown planthopper (BPH) attack, reaching a peak 3 h after wounding and 6 h after insect feeding
OsLOX10	Os11g0575600	LOC_Os11g36719	seedlings	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	 In this study, the lipoxygenase OsLOX10 gene from the 9-lipoxygenase metabolic pathway was cloned from rice, and its roles in determining seed longevity and tolerance to saline-alkaline stress caused by Na(2)CO(3) in rice seedlings were mainly investigated
OsLOX10	Os11g0575600	LOC_Os11g36719	resistance	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.
OsLOX10	Os11g0575600	LOC_Os11g36719	stress	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.
OsLOX10	Os11g0575600	LOC_Os11g36719	stress	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	 In this study, the lipoxygenase OsLOX10 gene from the 9-lipoxygenase metabolic pathway was cloned from rice, and its roles in determining seed longevity and tolerance to saline-alkaline stress caused by Na(2)CO(3) in rice seedlings were mainly investigated
OsLOX10	Os11g0575600	LOC_Os11g36719	seed	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.
OsLOX10	Os11g0575600	LOC_Os11g36719	seed	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	 In this study, the lipoxygenase OsLOX10 gene from the 9-lipoxygenase metabolic pathway was cloned from rice, and its roles in determining seed longevity and tolerance to saline-alkaline stress caused by Na(2)CO(3) in rice seedlings were mainly investigated
OsLOX10	Os11g0575600	LOC_Os11g36719	seed	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	 CRISPR/Cas9 knockout of OsLOX10 increased seed longevity compared with the wild-type and OsLOX10 overexpression lines in response to artificial aging
OsLOX10	Os11g0575600	LOC_Os11g36719	alkaline stress	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.
OsLOX10	Os11g0575600	LOC_Os11g36719	alkaline stress	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	 In this study, the lipoxygenase OsLOX10 gene from the 9-lipoxygenase metabolic pathway was cloned from rice, and its roles in determining seed longevity and tolerance to saline-alkaline stress caused by Na(2)CO(3) in rice seedlings were mainly investigated
OsLOX10	Os11g0575600	LOC_Os11g36719	tolerance	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	 In this study, the lipoxygenase OsLOX10 gene from the 9-lipoxygenase metabolic pathway was cloned from rice, and its roles in determining seed longevity and tolerance to saline-alkaline stress caused by Na(2)CO(3) in rice seedlings were mainly investigated
OsLOX10	Os11g0575600	LOC_Os11g36719	seed longevity	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings
OsLOX10	Os11g0575600	LOC_Os11g36719	saline stress	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings
OsLOX2	Os03g0179900|Os03g0179950	LOC_Os03g08220	disease	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	LnA application rescued disease symptoms on the OsTCP21-Res but not wild-type rice, supporting our hypothesis that OsLOX2 and OsLOX5 were the key JA synthetic genes hijacked by Guy11
OsLOX2	Os03g0179900|Os03g0179950	LOC_Os03g08220	ja	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	LnA application rescued disease symptoms on the OsTCP21-Res but not wild-type rice, supporting our hypothesis that OsLOX2 and OsLOX5 were the key JA synthetic genes hijacked by Guy11
OsLOX2	Os03g0179900|Os03g0179950	LOC_Os03g08220	JA	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	LnA application rescued disease symptoms on the OsTCP21-Res but not wild-type rice, supporting our hypothesis that OsLOX2 and OsLOX5 were the key JA synthetic genes hijacked by Guy11
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	grain	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	Previous reports showed that grain from the rice variety DawDam in which the LOX3 gene was deleted had less stale flavour after grain storage than normal rice
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	grain	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	The suppression of LOX3 expression in rice endosperm increased grain storability
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	grain	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	To our knowledge, this is the first report to demonstrate that decreased LOX3 expression can preserve rice grain quality during storage with no impact on grain yield, suggesting potential applications in agricultural production
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	seed	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	endosperm	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	endosperm	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	The molecular mechanism by which LOX3 expression is regulated during endosperm development remains unclear
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	endosperm	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	) plants to down-regulate LOX3 expression in rice endosperm
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	endosperm	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	The suppression of LOX3 expression in rice endosperm increased grain storability
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	development	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	The molecular mechanism by which LOX3 expression is regulated during endosperm development remains unclear
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	quality	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	To our knowledge, this is the first report to demonstrate that decreased LOX3 expression can preserve rice grain quality during storage with no impact on grain yield, suggesting potential applications in agricultural production
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	seed	TALEN-Based Mutagenesis of Lipoxygenase LOX3 Enhances the Storage Tolerance of Rice (Oryza sativa) Seeds.	Further molecular and protein level experiments verified LOX3 deficiency and demonstrated the improvement of seed storability
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	seed	TALEN-Based Mutagenesis of Lipoxygenase LOX3 Enhances the Storage Tolerance of Rice (Oryza sativa) Seeds.	Our work provides a flexible genome editing tool for improving important agronomic traits, as well as direct evidence that Lox3 has only a limited impact on seed longevity
OsLOX3|LOX3	Os03g0699700	LOC_Os03g49260	tolerance	TALEN-Based Mutagenesis of Lipoxygenase LOX3 Enhances the Storage Tolerance of Rice (Oryza sativa) Seeds.	TALEN-Based Mutagenesis of Lipoxygenase LOX3 Enhances the Storage Tolerance of Rice (Oryza sativa) Seeds.
OsLOX5	Os02g0194700	LOC_Os02g10120	disease	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	LnA application rescued disease symptoms on the OsTCP21-Res but not wild-type rice, supporting our hypothesis that OsLOX2 and OsLOX5 were the key JA synthetic genes hijacked by Guy11
OsLOX5	Os02g0194700	LOC_Os02g10120	ja	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	LnA application rescued disease symptoms on the OsTCP21-Res but not wild-type rice, supporting our hypothesis that OsLOX2 and OsLOX5 were the key JA synthetic genes hijacked by Guy11
OsLOX5	Os02g0194700	LOC_Os02g10120	JA	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	LnA application rescued disease symptoms on the OsTCP21-Res but not wild-type rice, supporting our hypothesis that OsLOX2 and OsLOX5 were the key JA synthetic genes hijacked by Guy11
OsLP1	Os06g0607100	LOC_Os06g40500	tolerance	Genetic architecture of seed glycerolipids in Asian cultivated rice.	 Further evidence demonstrated that OsLP1 also affects heading date, and that co-selection of OsLP1 and a flooding-tolerant QTL in Aus results in the abundance of saturated TAGs associated with flooding tolerance
OsLP1	Os06g0607100	LOC_Os06g40500	heading date	Genetic architecture of seed glycerolipids in Asian cultivated rice.	 Further evidence demonstrated that OsLP1 also affects heading date, and that co-selection of OsLP1 and a flooding-tolerant QTL in Aus results in the abundance of saturated TAGs associated with flooding tolerance
OsLP1	Os06g0607100	LOC_Os06g40500	flooding	Genetic architecture of seed glycerolipids in Asian cultivated rice.	 Further evidence demonstrated that OsLP1 also affects heading date, and that co-selection of OsLP1 and a flooding-tolerant QTL in Aus results in the abundance of saturated TAGs associated with flooding tolerance
OsLP1	Os06g0607100	LOC_Os06g40500	triacylglycerol	Genetic architecture of seed glycerolipids in Asian cultivated rice	We found that two genes encoding phosphatidylcholine (PC):diacylglycerol cholinephosphotransferase (OsLP1) and granule-bound starch synthase I (Waxy) contribute to variations in saturated triacylglycerol (TAG) and lyso-PC contents, respectively.
OsLP1	Os06g0607100	LOC_Os06g40500	flooding tolerance	Genetic architecture of seed glycerolipids in Asian cultivated rice	Further evidence demonstrated that OsLP1 also affects heading date, and that co-selection of OsLP1 and a flooding-tolerant QTL in Aus results in the abundance of saturated TAGs associated with flooding tolerance.
OsLpa1	Os02g0819400	LOC_Os02g57400	phosphate	The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism	The proteins encoded by OsLpa1 do not have homology to any of the inositol phosphate metabolism genes recently characterized in plants, although there is homology to 2-phosphoglycerate kinase, an enzyme found in hyperthermophilic methanogens that catalyzes the formation of 2,3-bisphosphoglycerate from 2-phosphoglycerate
OsLPAT2	Os11g0637800	LOC_Os11g41900	salt stress	The Examination of the Role of Rice Lysophosphatidic Acid Acyltransferase 2 in Response to Salt and Drought Stresses	The Examination of the Role of Rice Lysophosphatidic Acid Acyltransferase 2 in Response to Salt and Drought Stresses
OsLPAT2	Os11g0637800	LOC_Os11g41900	drought stress	The Examination of the Role of Rice Lysophosphatidic Acid Acyltransferase 2 in Response to Salt and Drought Stresses	The Examination of the Role of Rice Lysophosphatidic Acid Acyltransferase 2 in Response to Salt and Drought Stresses
OsLPLA	Os08g0435800	LOC_Os08g33810	seed	Characterization of a lipoate-protein ligase A gene of rice (Oryza sativa L.)	OsLPLA transcripts were abundantly expressed in leaves and developing seeds
OsLPR3	Os01g0127000	LOC_Os01g03630	homeostasis	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.
OsLPR3	Os01g0127000	LOC_Os01g03630	homeostasis	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	The results from this study provided insights into the evolutionary expansion and a likely functional divergence of OsLPR family with potential roles of OsLPR3 and 5 in the maintenance of Pi homeostasis in rice
OsLPR3	Os01g0127000	LOC_Os01g03630	Pi	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	Pi deficiency (-P) triggered significant increases in the relative expression levels of OsLPR3 and 5
OsLPR3	Os01g0127000	LOC_Os01g03630	Pi	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	The results from this study provided insights into the evolutionary expansion and a likely functional divergence of OsLPR family with potential roles of OsLPR3 and 5 in the maintenance of Pi homeostasis in rice
OsLPR3	Os01g0127000	LOC_Os01g03630	phosphate	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.
OsLPR3	Os01g0127000	LOC_Os01g03630	pi	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	Pi deficiency (-P) triggered significant increases in the relative expression levels of OsLPR3 and 5
OsLPR3	Os01g0127000	LOC_Os01g03630	pi	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	The results from this study provided insights into the evolutionary expansion and a likely functional divergence of OsLPR family with potential roles of OsLPR3 and 5 in the maintenance of Pi homeostasis in rice
OsLPR3	Os01g0127000	LOC_Os01g03630	Pi homeostasis	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	The results from this study provided insights into the evolutionary expansion and a likely functional divergence of OsLPR family with potential roles of OsLPR3 and 5 in the maintenance of Pi homeostasis in rice
OsLPR3	Os01g0127000	LOC_Os01g03630	phosphate homeostasis	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.
OsLPR5	Os01g0127200	LOC_Os01g03640	leaf	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	qRT-PCR and promoter-GUS reporter analyses indicated that under Pi-sufficient conditions OsLPR5 was highly expressed in the roots, and specific expression occurred in the leaf collars and nodes, and its expression was increased under Pi-deficient conditions
OsLPR5	Os01g0127200	LOC_Os01g03640	xylem	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Overexpression of OsLPR5 triggered higher ferroxidase activity, and elevated concentrations of Fe(III) in the xylem sap and of total Fe in the roots and shoots
OsLPR5	Os01g0127200	LOC_Os01g03640	root	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Knockout mutation in OsLPR5 by means of CRISPR-Cas9 resulted in adverse effects on Pi translocation, on the relative expression of Cis-NATOsPHO1;2, and on several morphological traits, including root development and yield potential
OsLPR5	Os01g0127200	LOC_Os01g03640	growth	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Our results indicate that ferroxidase-dependent OsLPR5 has both a broad-spectrum influence on growth and development in rice as well as affecting a subset of physiological and molecular traits that govern Pi homeostasis
OsLPR5	Os01g0127200	LOC_Os01g03640	development	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Knockout mutation in OsLPR5 by means of CRISPR-Cas9 resulted in adverse effects on Pi translocation, on the relative expression of Cis-NATOsPHO1;2, and on several morphological traits, including root development and yield potential
OsLPR5	Os01g0127200	LOC_Os01g03640	development	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Our results indicate that ferroxidase-dependent OsLPR5 has both a broad-spectrum influence on growth and development in rice as well as affecting a subset of physiological and molecular traits that govern Pi homeostasis
OsLPR5	Os01g0127200	LOC_Os01g03640	yield	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Knockout mutation in OsLPR5 by means of CRISPR-Cas9 resulted in adverse effects on Pi translocation, on the relative expression of Cis-NATOsPHO1;2, and on several morphological traits, including root development and yield potential
OsLPR5	Os01g0127200	LOC_Os01g03640	root development	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Knockout mutation in OsLPR5 by means of CRISPR-Cas9 resulted in adverse effects on Pi translocation, on the relative expression of Cis-NATOsPHO1;2, and on several morphological traits, including root development and yield potential
OsLPR5	Os01g0127200	LOC_Os01g03640	homeostasis	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Our results indicate that ferroxidase-dependent OsLPR5 has both a broad-spectrum influence on growth and development in rice as well as affecting a subset of physiological and molecular traits that govern Pi homeostasis
OsLPR5	Os01g0127200	LOC_Os01g03640	cell wall	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Transient expression of OsLPR5 in Nicotiana benthamiana provided evidence of its subcellular localization to the cell wall and endoplasmic reticulum
OsLPR5	Os01g0127200	LOC_Os01g03640	Pi	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Knockout mutation in OsLPR5 by means of CRISPR-Cas9 resulted in adverse effects on Pi translocation, on the relative expression of Cis-NATOsPHO1;2, and on several morphological traits, including root development and yield potential
OsLPR5	Os01g0127200	LOC_Os01g03640	Pi	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Our results indicate that ferroxidase-dependent OsLPR5 has both a broad-spectrum influence on growth and development in rice as well as affecting a subset of physiological and molecular traits that govern Pi homeostasis
OsLPR5	Os01g0127200	LOC_Os01g03640	Fe	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Overexpression of OsLPR5 triggered higher ferroxidase activity, and elevated concentrations of Fe(III) in the xylem sap and of total Fe in the roots and shoots
OsLPR5	Os01g0127200	LOC_Os01g03640	pi	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Knockout mutation in OsLPR5 by means of CRISPR-Cas9 resulted in adverse effects on Pi translocation, on the relative expression of Cis-NATOsPHO1;2, and on several morphological traits, including root development and yield potential
OsLPR5	Os01g0127200	LOC_Os01g03640	pi	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Our results indicate that ferroxidase-dependent OsLPR5 has both a broad-spectrum influence on growth and development in rice as well as affecting a subset of physiological and molecular traits that govern Pi homeostasis
OsLPR5	Os01g0127200	LOC_Os01g03640	Pi homeostasis	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice	Our results indicate that ferroxidase-dependent OsLPR5 has both a broad-spectrum influence on growth and development in rice as well as affecting a subset of physiological and molecular traits that govern Pi homeostasis
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	shoot	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	In transgenic rice, the knock-down of either OsPT2 or OsPT6 expression by RNA interference significantly decreased both the uptake and the long-distance transport of Pi from roots to shoots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	transporter	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	transporter	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	A putative high-affinity phosphate (Pi) transporter gene in rice (Oryza sativa), OsLPT1, was isolated by RT-PCR from the leaves of the plants
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	transporter	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	The 1635-bp nucleotide sequence of OsLPT1 spans an open reading frame encoding a polypeptide of 535 amino acids with sequence similarity to phosphate transporters from other plant species
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	pi	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	The expression of OsLPT1 in the roots was enhanced by Pi deprivation
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	pi	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	The data suggests that the OsLPT1 protein may be involved in enhancing phosphate uptake under conditions of Pi starvation, and in the translocation of Pi among cells in shoots to increase the efficiency of internal Pi use
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	transporter	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	Knockout of OsA8 affected the expression of several OsA genes and the high affinity phosphate transporter, OsPT6, and resulted in a higher P concentration in the roots and a lower amount of P in the shoots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	xylem	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	In situ hybridization revealed OsLPT1 expression in mesophyll cells, xylem parenchyma and phloem cells in the leaves, and in the epidermis, exodermis, and in the vasculature surrounding metaxylem vessels in the roots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	transporter	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Taken together, these data suggest OsPT6 plays a broad role in Pi uptake and translocation throughout the plant, whereas OsPT2 is a low-affinity Pi transporter, and functions in translocation of the stored Pi in the plant
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	shoot	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	Knockout of OsA8 affected the expression of several OsA genes and the high affinity phosphate transporter, OsPT6, and resulted in a higher P concentration in the roots and a lower amount of P in the shoots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	phosphate	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	A putative high-affinity phosphate (Pi) transporter gene in rice (Oryza sativa), OsLPT1, was isolated by RT-PCR from the leaves of the plants
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	phosphate	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	The 1635-bp nucleotide sequence of OsLPT1 spans an open reading frame encoding a polypeptide of 535 amino acids with sequence similarity to phosphate transporters from other plant species
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	phosphate	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	The data suggests that the OsLPT1 protein may be involved in enhancing phosphate uptake under conditions of Pi starvation, and in the translocation of Pi among cells in shoots to increase the efficiency of internal Pi use
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	pi	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	root	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	RT-PCR analysis demonstrated the expression of OsLPT1 in both leaves and roots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	root	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	The expression of OsLPT1 in the roots was enhanced by Pi deprivation
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	root	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	In situ hybridization revealed OsLPT1 expression in mesophyll cells, xylem parenchyma and phloem cells in the leaves, and in the epidermis, exodermis, and in the vasculature surrounding metaxylem vessels in the roots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	transporter	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	shoot	Cloning and characterization of cDNA for the Oryza sativa phosphate transporter	The data suggests that the OsLPT1 protein may be involved in enhancing phosphate uptake under conditions of Pi starvation, and in the translocation of Pi among cells in shoots to increase the efficiency of internal Pi use
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	pi	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	root	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	Knockout of OsA8 affected the expression of several OsA genes and the high affinity phosphate transporter, OsPT6, and resulted in a higher P concentration in the roots and a lower amount of P in the shoots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	lateral root	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	By using transgenic rice plants expressing the GUS reporter gene, driven by their promoters, we detected that OsPT2 was localized exclusively in the stele of primary and lateral roots, whereas OsPT6 was expressed in both epidermal and cortical cells of the younger primary and lateral roots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	root	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	By using transgenic rice plants expressing the GUS reporter gene, driven by their promoters, we detected that OsPT2 was localized exclusively in the stele of primary and lateral roots, whereas OsPT6 was expressed in both epidermal and cortical cells of the younger primary and lateral roots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	root	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	In transgenic rice, the knock-down of either OsPT2 or OsPT6 expression by RNA interference significantly decreased both the uptake and the long-distance transport of Pi from roots to shoots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	phosphate	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	phosphate	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice	Knockout of OsA8 affected the expression of several OsA genes and the high affinity phosphate transporter, OsPT6, and resulted in a higher P concentration in the roots and a lower amount of P in the shoots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	pi	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	OsPT6, but not OsPT2, was able to complement a yeast Pi uptake mutant in the high-affinity concentration range
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	pi	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	In transgenic rice, the knock-down of either OsPT2 or OsPT6 expression by RNA interference significantly decreased both the uptake and the long-distance transport of Pi from roots to shoots
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	pi	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Taken together, these data suggest OsPT6 plays a broad role in Pi uptake and translocation throughout the plant, whereas OsPT2 is a low-affinity Pi transporter, and functions in translocation of the stored Pi in the plant
OsLPT1|OsPht1;6|OsPT6	Os08g0564000	LOC_Os08g45000	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsLPXC	Os03g0223900	LOC_Os03g12320	stress	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	stress	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 Knockout of OsLPXC resulted in enhance sensitivity to LT stress in rice, with increased accumulation of reactive oxygen species (ROS), malondialdehyde and electrolyte leakage, while expression and activities of antioxidant enzymes were significantly suppressed
OsLPXC	Os03g0223900	LOC_Os03g12320	stress	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 The accumulation of methyl jasmonate (MeJA) in leave and several DEGs related to the jasmonate biosynthesis pathway were significantly downregulated in OsLPXC knockout plants, which showed differential levels of MeJA regulation in WT and knockout plants in response to cold stress
OsLPXC	Os03g0223900	LOC_Os03g12320	jasmonate	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 The accumulation of methyl jasmonate (MeJA) in leave and several DEGs related to the jasmonate biosynthesis pathway were significantly downregulated in OsLPXC knockout plants, which showed differential levels of MeJA regulation in WT and knockout plants in response to cold stress
OsLPXC	Os03g0223900	LOC_Os03g12320	jasmonate	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 These results indicated that OsLPXC positively regulates cold tolerance in rice via stabilizing the expression and activities of ROS scavenging enzymes, photosynthetic apparatus, cold signaling genes, and jasmonate biosynthesis
OsLPXC	Os03g0223900	LOC_Os03g12320	ja	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	JA	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	defense	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	oxidative stress	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	tolerance	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	tolerance	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 These results indicated that OsLPXC positively regulates cold tolerance in rice via stabilizing the expression and activities of ROS scavenging enzymes, photosynthetic apparatus, cold signaling genes, and jasmonate biosynthesis
OsLPXC	Os03g0223900	LOC_Os03g12320	cold tolerance	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 These results indicated that OsLPXC positively regulates cold tolerance in rice via stabilizing the expression and activities of ROS scavenging enzymes, photosynthetic apparatus, cold signaling genes, and jasmonate biosynthesis
OsLPXC	Os03g0223900	LOC_Os03g12320	oxidative	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	cold stress	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	cold stress	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 The accumulation of methyl jasmonate (MeJA) in leave and several DEGs related to the jasmonate biosynthesis pathway were significantly downregulated in OsLPXC knockout plants, which showed differential levels of MeJA regulation in WT and knockout plants in response to cold stress
OsLPXC	Os03g0223900	LOC_Os03g12320	cold	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	cold	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 The functional analysis of differentially expressed genes (DEGs), showed that numerous genes associated with antioxidant defense, photosynthesis, cold signaling were solely expressed and downregulated in oslpxc plants compared with WT under LT
OsLPXC	Os03g0223900	LOC_Os03g12320	cold	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 The accumulation of methyl jasmonate (MeJA) in leave and several DEGs related to the jasmonate biosynthesis pathway were significantly downregulated in OsLPXC knockout plants, which showed differential levels of MeJA regulation in WT and knockout plants in response to cold stress
OsLPXC	Os03g0223900	LOC_Os03g12320	cold	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 These results indicated that OsLPXC positively regulates cold tolerance in rice via stabilizing the expression and activities of ROS scavenging enzymes, photosynthetic apparatus, cold signaling genes, and jasmonate biosynthesis
OsLPXC	Os03g0223900	LOC_Os03g12320	reactive oxygen species	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 Knockout of OsLPXC resulted in enhance sensitivity to LT stress in rice, with increased accumulation of reactive oxygen species (ROS), malondialdehyde and electrolyte leakage, while expression and activities of antioxidant enzymes were significantly suppressed
OsLPXC	Os03g0223900	LOC_Os03g12320	methyl jasmonate	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 The accumulation of methyl jasmonate (MeJA) in leave and several DEGs related to the jasmonate biosynthesis pathway were significantly downregulated in OsLPXC knockout plants, which showed differential levels of MeJA regulation in WT and knockout plants in response to cold stress
OsLPXC	Os03g0223900	LOC_Os03g12320	 ja 	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	antioxidant defense	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
OsLPXC	Os03g0223900	LOC_Os03g12320	antioxidant defense	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	 The functional analysis of differentially expressed genes (DEGs), showed that numerous genes associated with antioxidant defense, photosynthesis, cold signaling were solely expressed and downregulated in oslpxc plants compared with WT under LT
OsLRR-RLK1	Os06g0691800	LOC_Os06g47650	transcription factor	OsLRR-RLK1, an early responsive leucine-rich repeat receptor-like kinase, initiates rice defense responses against a chewing herbivore.	OsLRR-RLK1 acts upstream of mitogen-activated protein kinase (MPK) cascades, and positively regulates defense-related MPKs and WRKY transcription factors
OsLRR-RLK1	Os06g0691800	LOC_Os06g47650	resistance	OsLRR-RLK1, an early responsive leucine-rich repeat receptor-like kinase, initiates rice defense responses against a chewing herbivore.	Moreover, OsLRR-RLK1 is a positive regulator of SSB-elicited, but not wound-elicited, levels of jasmonic acid and ethylene, trypsin protease inhibitor activity and plant resistance towards SSB
OsLRR-RLK1	Os06g0691800	LOC_Os06g47650	jasmonic	OsLRR-RLK1, an early responsive leucine-rich repeat receptor-like kinase, initiates rice defense responses against a chewing herbivore.	Moreover, OsLRR-RLK1 is a positive regulator of SSB-elicited, but not wound-elicited, levels of jasmonic acid and ethylene, trypsin protease inhibitor activity and plant resistance towards SSB
OsLRR-RLK1	Os06g0691800	LOC_Os06g47650	jasmonic acid	OsLRR-RLK1, an early responsive leucine-rich repeat receptor-like kinase, initiates rice defense responses against a chewing herbivore.	Moreover, OsLRR-RLK1 is a positive regulator of SSB-elicited, but not wound-elicited, levels of jasmonic acid and ethylene, trypsin protease inhibitor activity and plant resistance towards SSB
OsLRR-RLK1	Os06g0691800	LOC_Os06g47650	Kinase	OsLRR-RLK1, an early responsive leucine-rich repeat receptor-like kinase, initiates rice defense responses against a chewing herbivore.	OsLRR-RLK1 acts upstream of mitogen-activated protein kinase (MPK) cascades, and positively regulates defense-related MPKs and WRKY transcription factors
OsLRR-RLK1	Os06g0691800	LOC_Os06g47650	protein kinase	OsLRR-RLK1, an early responsive leucine-rich repeat receptor-like kinase, initiates rice defense responses against a chewing herbivore.	OsLRR-RLK1 acts upstream of mitogen-activated protein kinase (MPK) cascades, and positively regulates defense-related MPKs and WRKY transcription factors
OsLRR-RLK1	Os06g0691800	LOC_Os06g47650	Kinase	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	Screening of early signaling components reveals that indole pre-exposure directly enhances the expression of the receptor like kinase OsLRR-RLK1
OsLRR-RLK2	Os10g0119200	None	transcription factor	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Silencing OsLRR-RLK2 decreases the constitutive activity of  mitogen-activated protein kinase (OsMPK6) and alters BPH-induced transcript levels of several defense-related WRKY transcription factors
OsLRR-RLK2	Os10g0119200	None	ethylene	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Moreover, silencing OsLRR-RLK2 reduces BPH-induction of jasmonic acid and ethylene but promotes the biosynthesis of both elicited salicylic acid and H2 O2 ; silencing also enhances  the production of volatiles emitted from rice plants infested with gravid BPH females
OsLRR-RLK2	Os10g0119200	None	salicylic acid	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Moreover, silencing OsLRR-RLK2 reduces BPH-induction of jasmonic acid and ethylene but promotes the biosynthesis of both elicited salicylic acid and H2 O2 ; silencing also enhances  the production of volatiles emitted from rice plants infested with gravid BPH females
OsLRR-RLK2	Os10g0119200	None	jasmonic	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Moreover, silencing OsLRR-RLK2 reduces BPH-induction of jasmonic acid and ethylene but promotes the biosynthesis of both elicited salicylic acid and H2 O2 ; silencing also enhances  the production of volatiles emitted from rice plants infested with gravid BPH females
OsLRR-RLK2	Os10g0119200	None	jasmonic acid	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Moreover, silencing OsLRR-RLK2 reduces BPH-induction of jasmonic acid and ethylene but promotes the biosynthesis of both elicited salicylic acid and H2 O2 ; silencing also enhances  the production of volatiles emitted from rice plants infested with gravid BPH females
OsLRR-RLK2	Os10g0119200	None	Kinase	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Silencing OsLRR-RLK2 decreases the constitutive activity of  mitogen-activated protein kinase (OsMPK6) and alters BPH-induced transcript levels of several defense-related WRKY transcription factors
OsLRR-RLK2	Os10g0119200	None	protein kinase	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Silencing OsLRR-RLK2 decreases the constitutive activity of  mitogen-activated protein kinase (OsMPK6) and alters BPH-induced transcript levels of several defense-related WRKY transcription factors
OsLRR-RLK2	Os10g0119200	None	kinase	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Silencing OsLRR-RLK2 decreases the constitutive activity of  mitogen-activated protein kinase (OsMPK6) and alters BPH-induced transcript levels of several defense-related WRKY transcription factors
OsLRR-RLK2	Os10g0119200	None	insect resistance	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.
OsLRR-RLK2	Os10g0119200	None	transcription factor	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Silencing OsLRR-RLK2 decreases the constitutive activity of mitogen-activated protein kinase (OsMPK6) and alters BPH-induced transcript levels of several defense-related WRKY transcription factors
OsLRR-RLK2	Os10g0119200	None	ethylene	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Moreover, silencing OsLRR-RLK2 reduces BPH-induction of jasmonic acid and ethylene but promotes the biosynthesis of both elicited salicylic acid and H(2) O(2) ; silencing also enhances the production of volatiles emitted from rice plants infested with gravid BPH females
OsLRR-RLK2	Os10g0119200	None	salicylic acid	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Moreover, silencing OsLRR-RLK2 reduces BPH-induction of jasmonic acid and ethylene but promotes the biosynthesis of both elicited salicylic acid and H(2) O(2) ; silencing also enhances the production of volatiles emitted from rice plants infested with gravid BPH females
OsLRR-RLK2	Os10g0119200	None	jasmonic	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Moreover, silencing OsLRR-RLK2 reduces BPH-induction of jasmonic acid and ethylene but promotes the biosynthesis of both elicited salicylic acid and H(2) O(2) ; silencing also enhances the production of volatiles emitted from rice plants infested with gravid BPH females
OsLRR-RLK2	Os10g0119200	None	jasmonic acid	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Moreover, silencing OsLRR-RLK2 reduces BPH-induction of jasmonic acid and ethylene but promotes the biosynthesis of both elicited salicylic acid and H(2) O(2) ; silencing also enhances the production of volatiles emitted from rice plants infested with gravid BPH females
OsLRR-RLK2	Os10g0119200	None	Kinase	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Silencing OsLRR-RLK2 decreases the constitutive activity of mitogen-activated protein kinase (OsMPK6) and alters BPH-induced transcript levels of several defense-related WRKY transcription factors
OsLRR-RLK2	Os10g0119200	None	protein kinase	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Silencing OsLRR-RLK2 decreases the constitutive activity of mitogen-activated protein kinase (OsMPK6) and alters BPH-induced transcript levels of several defense-related WRKY transcription factors
OsLRR-RLK2	Os10g0119200	None	kinase	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Silencing OsLRR-RLK2 decreases the constitutive activity of mitogen-activated protein kinase (OsMPK6) and alters BPH-induced transcript levels of several defense-related WRKY transcription factors
OsLRR1	Os01g0809300	LOC_Os01g59440	disease	A novel simple extracellular leucine-rich repeat (eLRR) domain protein from rice (OsLRR1) enters the endosomal pathway and interacts with the hypersensitive-induced reaction protein 1 (OsHIR1)	The protective effects of OsLRR1 against bacterial pathogen infection were shown by the alleviating of disease symptoms, lowering of pathogen titres and higher expression of defence marker genes
OsLS	Os04g0497400	LOC_Os04g42000	jasmonic acid	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	Extents of OsLS expression correlated with increases in flavin, jasmonic acid, and ethylene content, and correlated with increases in resistance levels, suggesting a role for OsLS in defense responses
OsLS	Os04g0497400	LOC_Os04g42000	chloroplast	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	The OsLS protein localized to chloroplasts in three OsLS-expressing transgenic tobacco (LSETT) lines characterized as enhanced in growth and defense
OsLS	Os04g0497400	LOC_Os04g42000	ethylene	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	Extents of OsLS expression correlated with increases in flavin, jasmonic acid, and ethylene content, and correlated with increases in resistance levels, suggesting a role for OsLS in defense responses
OsLS	Os04g0497400	LOC_Os04g42000	growth	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	The OsLS protein localized to chloroplasts in three OsLS-expressing transgenic tobacco (LSETT) lines characterized as enhanced in growth and defense
OsLS	Os04g0497400	LOC_Os04g42000	jasmonic	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	Extents of OsLS expression correlated with increases in flavin, jasmonic acid, and ethylene content, and correlated with increases in resistance levels, suggesting a role for OsLS in defense responses
OsLS	Os04g0497400	LOC_Os04g42000	defense	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	To study the role of LS in plant pathogen defenses, we generated transgenic tobacco expressing the rice (Oryza sativa) LS gene, OsLS
OsLS	Os04g0497400	LOC_Os04g42000	defense	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	The OsLS protein localized to chloroplasts in three OsLS-expressing transgenic tobacco (LSETT) lines characterized as enhanced in growth and defense
OsLS	Os04g0497400	LOC_Os04g42000	defense	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	Extents of OsLS expression correlated with increases in flavin, jasmonic acid, and ethylene content, and correlated with increases in resistance levels, suggesting a role for OsLS in defense responses
OsLS	Os04g0497400	LOC_Os04g42000	defense response	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	Extents of OsLS expression correlated with increases in flavin, jasmonic acid, and ethylene content, and correlated with increases in resistance levels, suggesting a role for OsLS in defense responses
OsLSD1	Os08g0159500	LOC_Os08g06280	cell death	OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation	OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation
OsLSD1	Os08g0159500	LOC_Os08g06280	flower	OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation	Overexpression of OsLSD1 driven by the cauliflower mosaic virus 35S promoter accelerated callus differentiation in transformed rice tissues and increased chlorophyll b content in transgenic rice plants
OsLSD3	Os08g0130100	LOC_Os08g03610	zinc	Stress-Responsive Expression, Subcellular Localization and Protein-Protein Interactions of the Rice Metacaspase Family.	OsMC1 interacted with OsLSD1 and OsLSD3 while OsMC3 only interacted with OsLSD1 and that the zinc finger domain in OsMC1 is responsible for the interaction activity
OsLSK1	Os01g0669100	LOC_Os01g47900	growth	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	The expression of OsLSK1 responded to the exogenous application of growth hormones, to abiotic stresses, and its extracellular domain could form homodimers or heterodimers with other related SRKs
OsLSK1	Os01g0669100	LOC_Os01g47900	panicle	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	Over-expression of a truncated version of OsLSK1 (including the extracellular and transmembrane domain of OsLSK1 without the intracellular kinase domain) increased plant height and improve yield components, including primary branches per panicle and grains per primary branch, resulting in about a 55
OsLSK1	Os01g0669100	LOC_Os01g47900	grain	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	The utility of transgenic expression of a dominant negative form of SRK, OsLSK1 (Large spike S-domain receptor like Kinase 1), is reported here for the improvement of grain yield components in rice
OsLSK1	Os01g0669100	LOC_Os01g47900	grain	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	These results indicate that OsLSK1 may act redundantly with its homologues to affect yield traits in rice and manipulation of OsLSK1 by the dominant negative method is a practicable strategy to improve grain yield in rice and other crops
OsLSK1	Os01g0669100	LOC_Os01g47900	grain yield	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	The utility of transgenic expression of a dominant negative form of SRK, OsLSK1 (Large spike S-domain receptor like Kinase 1), is reported here for the improvement of grain yield components in rice
OsLSK1	Os01g0669100	LOC_Os01g47900	grain yield	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	These results indicate that OsLSK1 may act redundantly with its homologues to affect yield traits in rice and manipulation of OsLSK1 by the dominant negative method is a practicable strategy to improve grain yield in rice and other crops
OsLSK1	Os01g0669100	LOC_Os01g47900	yield	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	The utility of transgenic expression of a dominant negative form of SRK, OsLSK1 (Large spike S-domain receptor like Kinase 1), is reported here for the improvement of grain yield components in rice
OsLSK1	Os01g0669100	LOC_Os01g47900	yield	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	Over-expression of a truncated version of OsLSK1 (including the extracellular and transmembrane domain of OsLSK1 without the intracellular kinase domain) increased plant height and improve yield components, including primary branches per panicle and grains per primary branch, resulting in about a 55
OsLSK1	Os01g0669100	LOC_Os01g47900	yield	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	These results indicate that OsLSK1 may act redundantly with its homologues to affect yield traits in rice and manipulation of OsLSK1 by the dominant negative method is a practicable strategy to improve grain yield in rice and other crops
OsLSK1	Os01g0669100	LOC_Os01g47900	abiotic stress	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	The expression of OsLSK1 responded to the exogenous application of growth hormones, to abiotic stresses, and its extracellular domain could form homodimers or heterodimers with other related SRKs
OsLSK1	Os01g0669100	LOC_Os01g47900	height	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	Over-expression of a truncated version of OsLSK1 (including the extracellular and transmembrane domain of OsLSK1 without the intracellular kinase domain) increased plant height and improve yield components, including primary branches per panicle and grains per primary branch, resulting in about a 55
OsLSK1	Os01g0669100	LOC_Os01g47900	plasma membrane	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	OsLSK1 was highly expressed in nodes of rice and is a plasma membrane protein
OsLSK1	Os01g0669100	LOC_Os01g47900	plant height	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	Over-expression of a truncated version of OsLSK1 (including the extracellular and transmembrane domain of OsLSK1 without the intracellular kinase domain) increased plant height and improve yield components, including primary branches per panicle and grains per primary branch, resulting in about a 55
OsLSK1	Os01g0669100	LOC_Os01g47900	biotic stress	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	The expression of OsLSK1 responded to the exogenous application of growth hormones, to abiotic stresses, and its extracellular domain could form homodimers or heterodimers with other related SRKs
OsLSK1	Os01g0669100	LOC_Os01g47900	Kinase	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	The utility of transgenic expression of a dominant negative form of SRK, OsLSK1 (Large spike S-domain receptor like Kinase 1), is reported here for the improvement of grain yield components in rice
OsLSK1	Os01g0669100	LOC_Os01g47900	Kinase	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	Over-expression of a truncated version of OsLSK1 (including the extracellular and transmembrane domain of OsLSK1 without the intracellular kinase domain) increased plant height and improve yield components, including primary branches per panicle and grains per primary branch, resulting in about a 55
OsLSR	Os10g0183000	LOC_Os10g10360	seed	Both overexpression and suppression of an Oryza sativa NB-LRR-like gene OsLSR result in autoactivation of immune response and thiamine accumulation.	) NB-LRR gene via an insertion mutation, this mutant confesses a low seed setting phenotype and the corresponding genetic locus was named OsLSR (Low seed setting related)
OsLSR	Os10g0183000	LOC_Os10g10360	yield	Both overexpression and suppression of an Oryza sativa NB-LRR-like gene OsLSR result in autoactivation of immune response and thiamine accumulation.	Comparing with wildtype plant, both overexpression and suppression of OsLSR lead to the autoactivation of the rice immune system and accumulation of thiamine, which result in a great fitness cost and yield penalty
OsLSR	Os10g0183000	LOC_Os10g10360	immune response	Both overexpression and suppression of an Oryza sativa NB-LRR-like gene OsLSR result in autoactivation of immune response and thiamine accumulation.	Both overexpression and suppression of an Oryza sativa NB-LRR-like gene OsLSR result in autoactivation of immune response and thiamine accumulation.
OsLti6a	Os07g0635900	LOC_Os07g44180	seedling	The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature	Two closely related genes (OsLti6a, OsLti6b), which are induced by low temperature during seedling emergence were isolated from a cold tolerant temperate japonica rice cultivar
OsLti6a	Os07g0635900	LOC_Os07g44180	temperature	The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature	Two closely related genes (OsLti6a, OsLti6b), which are induced by low temperature during seedling emergence were isolated from a cold tolerant temperate japonica rice cultivar
OsLti6b|ddOs32	Os05g0138300	LOC_Os05g04700	seedling	Isolation of cold stress-responsive genes in the reproductive organs, and characterization of the OsLti6b gene from rice (Oryza sativa L.)	Over-expression of OsLti6b increased cold tolerance as revealed by seedling wilting rates and ion leakages of mature leaves, demonstrating that the extent of the tolerance correlates well with its expression level
OsLti6b|ddOs32	Os05g0138300	LOC_Os05g04700	reproductive	Isolation of cold stress-responsive genes in the reproductive organs, and characterization of the OsLti6b gene from rice (Oryza sativa L.)	Isolation of cold stress-responsive genes in the reproductive organs, and characterization of the OsLti6b gene from rice (Oryza sativa L.)
OsLti6b|ddOs32	Os05g0138300	LOC_Os05g04700	cold stress	Isolation of cold stress-responsive genes in the reproductive organs, and characterization of the OsLti6b gene from rice (Oryza sativa L.)	Isolation of cold stress-responsive genes in the reproductive organs, and characterization of the OsLti6b gene from rice (Oryza sativa L.)
OsLti6b|ddOs32	Os05g0138300	LOC_Os05g04700	seedling	The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature	Two closely related genes (OsLti6a, OsLti6b), which are induced by low temperature during seedling emergence were isolated from a cold tolerant temperate japonica rice cultivar
OsLti6b|ddOs32	Os05g0138300	LOC_Os05g04700	cold tolerance	Isolation of cold stress-responsive genes in the reproductive organs, and characterization of the OsLti6b gene from rice (Oryza sativa L.)	Over-expression of OsLti6b increased cold tolerance as revealed by seedling wilting rates and ion leakages of mature leaves, demonstrating that the extent of the tolerance correlates well with its expression level
OsLti6b|ddOs32	Os05g0138300	LOC_Os05g04700	temperature	The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature	Two closely related genes (OsLti6a, OsLti6b), which are induced by low temperature during seedling emergence were isolated from a cold tolerant temperate japonica rice cultivar
OsLTP47	Os01g0607100	LOC_Os01g42210	development	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.
OsLTP47	Os01g0607100	LOC_Os01g42210	development	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	 These findings suggest that the plasma membrane-localized OsLTP47 may function as a mediator in a lipid transfer relay through association with cytosolic and/or locular OsC6 for pollen wall development and that various LTPs may function in a coordinated manner to transport lipid molecules during pollen wall development
OsLTP47	Os01g0607100	LOC_Os01g42210	pollen	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.
OsLTP47	Os01g0607100	LOC_Os01g42210	pollen	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	 Dysfunction of OsLTP47 causes disordered lipid metabolism and defective pollen walls, leading to male sterility
OsLTP47	Os01g0607100	LOC_Os01g42210	pollen	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	 These findings suggest that the plasma membrane-localized OsLTP47 may function as a mediator in a lipid transfer relay through association with cytosolic and/or locular OsC6 for pollen wall development and that various LTPs may function in a coordinated manner to transport lipid molecules during pollen wall development
OsLTP47	Os01g0607100	LOC_Os01g42210	sterility	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	 Dysfunction of OsLTP47 causes disordered lipid metabolism and defective pollen walls, leading to male sterility
OsLTP47	Os01g0607100	LOC_Os01g42210	plasma membrane	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	 These findings suggest that the plasma membrane-localized OsLTP47 may function as a mediator in a lipid transfer relay through association with cytosolic and/or locular OsC6 for pollen wall development and that various LTPs may function in a coordinated manner to transport lipid molecules during pollen wall development
OsLTP47	Os01g0607100	LOC_Os01g42210	male sterility	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	 Dysfunction of OsLTP47 causes disordered lipid metabolism and defective pollen walls, leading to male sterility
OsLTP47	Os01g0607100	LOC_Os01g42210	pollen wall	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.
OsLTP47	Os01g0607100	LOC_Os01g42210	pollen wall	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	 Dysfunction of OsLTP47 causes disordered lipid metabolism and defective pollen walls, leading to male sterility
OsLTP47	Os01g0607100	LOC_Os01g42210	pollen wall	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	 These findings suggest that the plasma membrane-localized OsLTP47 may function as a mediator in a lipid transfer relay through association with cytosolic and/or locular OsC6 for pollen wall development and that various LTPs may function in a coordinated manner to transport lipid molecules during pollen wall development
OsLTP5	Os11g0115400	LOC_Os11g02389	ABA	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene	Expression of OsLTP5 was induced in shoots in response to ABA and salicylic acid
OsLTP5	Os11g0115400	LOC_Os11g02389	stem	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene	The OsLTP5 transcript was expressed prominently in stems and flowers, but was barely detectable in leaves
OsLTP5	Os11g0115400	LOC_Os11g02389	cutin	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene	Treatment with the cutin monomer 16-hydroxypalmitic acid (HPA), a major component of cutin, elicited the synthesis of hydrogen peroxide (H2O2) in rice leaves and induced the expression of the lipid transfer protein gene OsLTP5
OsLTP5	Os11g0115400	LOC_Os11g02389	cutin	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene
OsLTP5	Os11g0115400	LOC_Os11g02389	shoot	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene	Expression of OsLTP5 was induced in shoots in response to ABA and salicylic acid
OsLTP5	Os11g0115400	LOC_Os11g02389	salicylic acid	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene	Expression of OsLTP5 was induced in shoots in response to ABA and salicylic acid
OsLTP5	Os11g0115400	LOC_Os11g02389	flower	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene	The OsLTP5 transcript was expressed prominently in stems and flowers, but was barely detectable in leaves
OsLTPL159	Os10g0505500	LOC_Os10g36160	seedling	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.
OsLTPL159	Os10g0505500	LOC_Os10g36160	tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.
OsLTPL159	Os10g0505500	LOC_Os10g36160	tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	In addition, down-regulation of the expression of OsLTPL159 in the japonica variety ZH17 by RNA interference (RNAi) significantly decreased cold tolerance
OsLTPL159	Os10g0505500	LOC_Os10g36160	tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	Notably, overexpression of another allele, OsLTPL159GC2 , from the recipient parent Guichao 2 (GC2), an indica variety, did not improve cold tolerance, indicating that the variations in the OsLTPL159 coding region of GC2 might disrupt its function for cold tolerance
OsLTPL159	Os10g0505500	LOC_Os10g36160	tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	Further sequence comparison found that all 22 japonica varieties surveyed had an OsLTPL159 haplotype identical to IL112 and were more cold-tolerant than the surveyed indica varieties, implying that the variations in OsLTPL159 might be associated with differential cold tolerance of japonica and indica rice
OsLTPL159	Os10g0505500	LOC_Os10g36160	tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	Therefore, our findings suggest that the OsLTPL159 allele of japonica rice could be used to improve cold tolerance of indica rice through a molecular breeding strategy
OsLTPL159	Os10g0505500	LOC_Os10g36160	cold tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.
OsLTPL159	Os10g0505500	LOC_Os10g36160	cold tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	In addition, down-regulation of the expression of OsLTPL159 in the japonica variety ZH17 by RNA interference (RNAi) significantly decreased cold tolerance
OsLTPL159	Os10g0505500	LOC_Os10g36160	cold tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	Notably, overexpression of another allele, OsLTPL159GC2 , from the recipient parent Guichao 2 (GC2), an indica variety, did not improve cold tolerance, indicating that the variations in the OsLTPL159 coding region of GC2 might disrupt its function for cold tolerance
OsLTPL159	Os10g0505500	LOC_Os10g36160	cold tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	Further sequence comparison found that all 22 japonica varieties surveyed had an OsLTPL159 haplotype identical to IL112 and were more cold-tolerant than the surveyed indica varieties, implying that the variations in OsLTPL159 might be associated with differential cold tolerance of japonica and indica rice
OsLTPL159	Os10g0505500	LOC_Os10g36160	cold tolerance	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	Therefore, our findings suggest that the OsLTPL159 allele of japonica rice could be used to improve cold tolerance of indica rice through a molecular breeding strategy
OsLTPL159	Os10g0505500	LOC_Os10g36160	R protein	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.
OsLTPL159	Os10g0505500	LOC_Os10g36160	breeding	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	Therefore, our findings suggest that the OsLTPL159 allele of japonica rice could be used to improve cold tolerance of indica rice through a molecular breeding strategy
OsLTPL23	Os12g0114500	LOC_Os12g02290	growth	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Integrated analysis indicated that OsLTPL23 may exert an favorable effect on rice seed germination and early seedling growth via modulating endogenous ABA homeostasis
OsLTPL23	Os12g0114500	LOC_Os12g02290	seedling	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Further investigations found that osltpl23 mutants displays weakened early seedling growth, with elevated gene expresssion of ABA catabolism genes and repressive transcription response of defence-related genes OsWRKY45, OsEiN3, OsPR1a, OsPR1b and OsNPR1
OsLTPL23	Os12g0114500	LOC_Os12g02290	seedling	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Integrated analysis indicated that OsLTPL23 may exert an favorable effect on rice seed germination and early seedling growth via modulating endogenous ABA homeostasis
OsLTPL23	Os12g0114500	LOC_Os12g02290	seed	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Starch and soluble sugar contents measurement showed that OsLTPL23 may have alpha-amylase inhibitor activity, and high soluble sugar content may be a causal agent for the delayed seed germination of osltpl23 mutants
OsLTPL23	Os12g0114500	LOC_Os12g02290	seed	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Integrated analysis indicated that OsLTPL23 may exert an favorable effect on rice seed germination and early seedling growth via modulating endogenous ABA homeostasis
OsLTPL23	Os12g0114500	LOC_Os12g02290	starch	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Starch and soluble sugar contents measurement showed that OsLTPL23 may have alpha-amylase inhibitor activity, and high soluble sugar content may be a causal agent for the delayed seed germination of osltpl23 mutants
OsLTPL23	Os12g0114500	LOC_Os12g02290	seed germination	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Starch and soluble sugar contents measurement showed that OsLTPL23 may have alpha-amylase inhibitor activity, and high soluble sugar content may be a causal agent for the delayed seed germination of osltpl23 mutants
OsLTPL23	Os12g0114500	LOC_Os12g02290	seed germination	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Integrated analysis indicated that OsLTPL23 may exert an favorable effect on rice seed germination and early seedling growth via modulating endogenous ABA homeostasis
OsLTPL23	Os12g0114500	LOC_Os12g02290	nucleus	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Subcellular localization analysis confirmed that OsLTPL23 is present in the plasma membrane and nucleus
OsLTPL23	Os12g0114500	LOC_Os12g02290	ABA	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Transcript profiles in the germinating seeds exhibited that the abscisic acid (ABA)-responsive genes, OsABI3 and OsABI5, and biosynthesis genes, OsNCED1, OsNCED2, OsNCED3 and OsNCED4, are obviously upregulated in the osltpl23 mutants compared to NIP plants, conversely, ABA metabolism genes OsABA8ox1, OsABA8ox2 and OsABA8ox3 are stepwise decreased
OsLTPL23	Os12g0114500	LOC_Os12g02290	ABA	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Further investigations found that osltpl23 mutants displays weakened early seedling growth, with elevated gene expresssion of ABA catabolism genes and repressive transcription response of defence-related genes OsWRKY45, OsEiN3, OsPR1a, OsPR1b and OsNPR1
OsLTPL23	Os12g0114500	LOC_Os12g02290	ABA	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Integrated analysis indicated that OsLTPL23 may exert an favorable effect on rice seed germination and early seedling growth via modulating endogenous ABA homeostasis
OsLTPL23	Os12g0114500	LOC_Os12g02290	homeostasis	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Integrated analysis indicated that OsLTPL23 may exert an favorable effect on rice seed germination and early seedling growth via modulating endogenous ABA homeostasis
OsLTPL23	Os12g0114500	LOC_Os12g02290	abscisic acid	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Transcript profiles in the germinating seeds exhibited that the abscisic acid (ABA)-responsive genes, OsABI3 and OsABI5, and biosynthesis genes, OsNCED1, OsNCED2, OsNCED3 and OsNCED4, are obviously upregulated in the osltpl23 mutants compared to NIP plants, conversely, ABA metabolism genes OsABA8ox1, OsABA8ox2 and OsABA8ox3 are stepwise decreased
OsLTPL23	Os12g0114500	LOC_Os12g02290	sugar	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Starch and soluble sugar contents measurement showed that OsLTPL23 may have alpha-amylase inhibitor activity, and high soluble sugar content may be a causal agent for the delayed seed germination of osltpl23 mutants
OsLTPL23	Os12g0114500	LOC_Os12g02290	plasma membrane	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Subcellular localization analysis confirmed that OsLTPL23 is present in the plasma membrane and nucleus
OsLTPL23	Os12g0114500	LOC_Os12g02290	 ABA 	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Transcript profiles in the germinating seeds exhibited that the abscisic acid (ABA)-responsive genes, OsABI3 and OsABI5, and biosynthesis genes, OsNCED1, OsNCED2, OsNCED3 and OsNCED4, are obviously upregulated in the osltpl23 mutants compared to NIP plants, conversely, ABA metabolism genes OsABA8ox1, OsABA8ox2 and OsABA8ox3 are stepwise decreased
OsLTPL23	Os12g0114500	LOC_Os12g02290	 ABA 	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Further investigations found that osltpl23 mutants displays weakened early seedling growth, with elevated gene expresssion of ABA catabolism genes and repressive transcription response of defence-related genes OsWRKY45, OsEiN3, OsPR1a, OsPR1b and OsNPR1
OsLTPL23	Os12g0114500	LOC_Os12g02290	 ABA 	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Integrated analysis indicated that OsLTPL23 may exert an favorable effect on rice seed germination and early seedling growth via modulating endogenous ABA homeostasis
OsLTPL23	Os12g0114500	LOC_Os12g02290	seedling growth	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Further investigations found that osltpl23 mutants displays weakened early seedling growth, with elevated gene expresssion of ABA catabolism genes and repressive transcription response of defence-related genes OsWRKY45, OsEiN3, OsPR1a, OsPR1b and OsNPR1
OsLTPL23	Os12g0114500	LOC_Os12g02290	seedling growth	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Integrated analysis indicated that OsLTPL23 may exert an favorable effect on rice seed germination and early seedling growth via modulating endogenous ABA homeostasis
OsLTPL23	Os12g0114500	LOC_Os12g02290	ABA catabolism	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	 Further investigations found that osltpl23 mutants displays weakened early seedling growth, with elevated gene expresssion of ABA catabolism genes and repressive transcription response of defence-related genes OsWRKY45, OsEiN3, OsPR1a, OsPR1b and OsNPR1
OsLTPL36|OsCIP1	Os03g0369100	LOC_Os03g25350	seed	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Transcriptional profiling and in situ hybridization analysis confirmed that OsLTPL36 was exclusively expressed in developing seed coat and endosperm aleurone cells
OsLTPL36|OsCIP1	Os03g0369100	LOC_Os03g25350	seed	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Down-regulated expression of OsLTPL36 led to decreased seed setting rate and 1000-grain weight in transgenic plants
OsLTPL36|OsCIP1	Os03g0369100	LOC_Os03g25350	seed	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Moreover, impeded seed germination and puny seedling were also observed in the OsLTPL36 RNAi lines
OsLTPL36|OsCIP1	Os03g0369100	LOC_Os03g25350	seedling	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Moreover, impeded seed germination and puny seedling were also observed in the OsLTPL36 RNAi lines
OsLTPL36|OsCIP1	Os03g0369100	LOC_Os03g25350	development	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Histological analysis showed that the embryo development was delayed after down regulation of OsLTPL36
OsLTPL36|OsCIP1	Os03g0369100	LOC_Os03g25350	seed germination	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Moreover, impeded seed germination and puny seedling were also observed in the OsLTPL36 RNAi lines
OsLTPL36|OsCIP1	Os03g0369100	LOC_Os03g25350	endosperm	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Transcriptional profiling and in situ hybridization analysis confirmed that OsLTPL36 was exclusively expressed in developing seed coat and endosperm aleurone cells
OsLTPL36|OsCIP1	Os03g0369100	LOC_Os03g25350	endosperm	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Further studies showed that suppressed expression of OsLTPL36 caused chalky endosperm and resulted in reduced fat acid content in RNAi lines as compared with wild type (WT)
OsLTPL36|OsCIP1	Os03g0369100	LOC_Os03g25350	grain weight	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Down-regulated expression of OsLTPL36 led to decreased seed setting rate and 1000-grain weight in transgenic plants
OsLUGL	Os01g0607400	LOC_Os01g42260	auxin	OsLUGL is involved in the regulating auxin level and OsARFs expression in rice (Oryza sativa L.).	OsLUGL is involved in the regulating auxin level and OsARFs expression in rice (Oryza sativa L.).
OsLUGL	Os01g0607400	LOC_Os01g42260	development	OsLUGL is involved in the regulating auxin level and OsARFs expression in rice (Oryza sativa L.).	These findings provide a valuable insight into the molecular functions of OsLUGL in rice floral development
OsLUGL	Os01g0607400	LOC_Os01g42260	floral	OsLUGL is involved in the regulating auxin level and OsARFs expression in rice (Oryza sativa L.).	These findings provide a valuable insight into the molecular functions of OsLUGL in rice floral development
OsLUGL	Os01g0607400	LOC_Os01g42260	transcriptional regulator	OsLUGL is involved in the regulating auxin level and OsARFs expression in rice (Oryza sativa L.).	KKX encodes a putative LEUNIG-like (LUGL) transcriptional regulator OsLUGL
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	grain	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 Non-functional alleles of OsLUX extremely extended vegetative phase, leading to photoperiod-insensitive late flowering and great increase of grain yield
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	grain yield	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 Non-functional alleles of OsLUX extremely extended vegetative phase, leading to photoperiod-insensitive late flowering and great increase of grain yield
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	yield	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 Non-functional alleles of OsLUX extremely extended vegetative phase, leading to photoperiod-insensitive late flowering and great increase of grain yield
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	vegetative	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 Non-functional alleles of OsLUX extremely extended vegetative phase, leading to photoperiod-insensitive late flowering and great increase of grain yield
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	flowering	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 Non-functional alleles of OsLUX extremely extended vegetative phase, leading to photoperiod-insensitive late flowering and great increase of grain yield
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	flowering	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 OsLUX displayed an obvious diurnal rhythm expression with the peak at dusk and promoted rice flowering via coordinating the expression of genes associated with the circadian clock and the output integrators of photoperiodic flowering
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	flowering	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	 OsLUX combined with OsELF4a and OsELF3a or OsELF3b to form two ECs, of which the OsLUX-OsELF3a-OsELF4a was likely the dominant promoter for photoperiodic flowering
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	transcription factor	The clock component OsLUX regulates rice heading through recruiting OsELF3-1 and OsELF4s to repress Hd1 and Ghd7.	 RESULTS: The circadian gene OsLUX encodes an MYB family transcription factor that functions as a vital circadian clock regulator and controls rice heading
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	flowering time	The clock component OsLUX regulates rice heading through recruiting OsELF3-1 and OsELF4s to repress Hd1 and Ghd7.	 OBJECTIVES: In this study, we aimed to confirm the role of OsLUX in flowering time regulation in rice
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	flowering	The clock component OsLUX regulates rice heading through recruiting OsELF3-1 and OsELF4s to repress Hd1 and Ghd7.	 OBJECTIVES: In this study, we aimed to confirm the role of OsLUX in flowering time regulation in rice
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	flowering	The clock component OsLUX regulates rice heading through recruiting OsELF3-1 and OsELF4s to repress Hd1 and Ghd7.	 OsELF3-1 contributes to the translocation of OsLUX to the nucleus, and a compromised flowering phenotype results upon mutation of any component of the OsEC complex
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	leaf	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 OsLUX was found to be specifically expressed in leaf blades and upregulated by both cold stress and circadian rhythm
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 OsLUX was found to be specifically expressed in leaf blades and upregulated by both cold stress and circadian rhythm
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Furthermore, overexpressing OsLUX upregulated the expression levels of oxidative stress-responsive genes, which improved reactive oxygen species (ROS) scavenging ability and enhanced tolerance to chilling stress
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Promoter analysis showed that the OsLUX promoter contains two dehydration-responsive element binding (DREB) motifs at positions -510/-505 (GTCGGa) and -162/-170 (cCACCGccc), which indicated that OsDREB1s and OsDREB2s probably regulate OsLUX expression by binding to the motif to respond to cold stress
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 These results demonstrate that OsLUX serves as a positive regulatory factor of cold stress and that overexpressing OsLUX could be used in rice breeding programs to enhance abiotic stress tolerance
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	seedling	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Overexpressing OsLUX resulted in increased cold tolerance and reduced ion leakage under cold-stress conditions during the seedling stage
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	seedling	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 In contrast, the knockout of OsLUX decreased seedling cold tolerance and showed higher ion leakage compared to the wild type
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	oxidative stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Furthermore, overexpressing OsLUX upregulated the expression levels of oxidative stress-responsive genes, which improved reactive oxygen species (ROS) scavenging ability and enhanced tolerance to chilling stress
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	tolerance	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	tolerance	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Overexpressing OsLUX resulted in increased cold tolerance and reduced ion leakage under cold-stress conditions during the seedling stage
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	tolerance	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 In contrast, the knockout of OsLUX decreased seedling cold tolerance and showed higher ion leakage compared to the wild type
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	tolerance	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Furthermore, overexpressing OsLUX upregulated the expression levels of oxidative stress-responsive genes, which improved reactive oxygen species (ROS) scavenging ability and enhanced tolerance to chilling stress
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	tolerance	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 These results demonstrate that OsLUX serves as a positive regulatory factor of cold stress and that overexpressing OsLUX could be used in rice breeding programs to enhance abiotic stress tolerance
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold tolerance	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold tolerance	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Overexpressing OsLUX resulted in increased cold tolerance and reduced ion leakage under cold-stress conditions during the seedling stage
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold tolerance	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 In contrast, the knockout of OsLUX decreased seedling cold tolerance and showed higher ion leakage compared to the wild type
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	oxidative	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Furthermore, overexpressing OsLUX upregulated the expression levels of oxidative stress-responsive genes, which improved reactive oxygen species (ROS) scavenging ability and enhanced tolerance to chilling stress
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 OsLUX was found to be specifically expressed in leaf blades and upregulated by both cold stress and circadian rhythm
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Promoter analysis showed that the OsLUX promoter contains two dehydration-responsive element binding (DREB) motifs at positions -510/-505 (GTCGGa) and -162/-170 (cCACCGccc), which indicated that OsDREB1s and OsDREB2s probably regulate OsLUX expression by binding to the motif to respond to cold stress
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 These results demonstrate that OsLUX serves as a positive regulatory factor of cold stress and that overexpressing OsLUX could be used in rice breeding programs to enhance abiotic stress tolerance
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	abiotic stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 These results demonstrate that OsLUX serves as a positive regulatory factor of cold stress and that overexpressing OsLUX could be used in rice breeding programs to enhance abiotic stress tolerance
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	biotic stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 These results demonstrate that OsLUX serves as a positive regulatory factor of cold stress and that overexpressing OsLUX could be used in rice breeding programs to enhance abiotic stress tolerance
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 OsLUX was found to be specifically expressed in leaf blades and upregulated by both cold stress and circadian rhythm
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Overexpressing OsLUX resulted in increased cold tolerance and reduced ion leakage under cold-stress conditions during the seedling stage
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 In contrast, the knockout of OsLUX decreased seedling cold tolerance and showed higher ion leakage compared to the wild type
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Promoter analysis showed that the OsLUX promoter contains two dehydration-responsive element binding (DREB) motifs at positions -510/-505 (GTCGGa) and -162/-170 (cCACCGccc), which indicated that OsDREB1s and OsDREB2s probably regulate OsLUX expression by binding to the motif to respond to cold stress
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	cold	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 These results demonstrate that OsLUX serves as a positive regulatory factor of cold stress and that overexpressing OsLUX could be used in rice breeding programs to enhance abiotic stress tolerance
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	stress tolerance	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 These results demonstrate that OsLUX serves as a positive regulatory factor of cold stress and that overexpressing OsLUX could be used in rice breeding programs to enhance abiotic stress tolerance
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	breeding	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 These results demonstrate that OsLUX serves as a positive regulatory factor of cold stress and that overexpressing OsLUX could be used in rice breeding programs to enhance abiotic stress tolerance
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	chilling	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Furthermore, overexpressing OsLUX upregulated the expression levels of oxidative stress-responsive genes, which improved reactive oxygen species (ROS) scavenging ability and enhanced tolerance to chilling stress
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	chilling stress	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Furthermore, overexpressing OsLUX upregulated the expression levels of oxidative stress-responsive genes, which improved reactive oxygen species (ROS) scavenging ability and enhanced tolerance to chilling stress
OsLUX|OsPCL1	Os01g0971800	LOC_Os01g74020	reactive oxygen species	OsLUX Confers Rice Cold Tolerance as a Positive Regulatory Factor.	 Furthermore, overexpressing OsLUX upregulated the expression levels of oxidative stress-responsive genes, which improved reactive oxygen species (ROS) scavenging ability and enhanced tolerance to chilling stress
OsMADS13	Os12g0207000	LOC_Os12g10540	floral	The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice	Furthermore, making carpels inside carpels, the osmads13 flower is indeterminate, showing that OsMADS13 also has a function in floral meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	osmads13-3 osmads3-4 displayed a loss of floral meristem determinacy and generated abundant carpelloid structures containing severe defective ovules in the flower center, which were not detectable in the single mutant
OsMADS13	Os12g0207000	LOC_Os12g10540	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	This indicates that OsMADS3 plays a synergistic role with OsMADS13 in both ovule development and floral meristem termination
OsMADS13	Os12g0207000	LOC_Os12g10540	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	These observations suggest that DL and OsMADS13 may function in the same pathway specifying the identity of carpel/ovule and floral meristem
OsMADS13	Os12g0207000	LOC_Os12g10540	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	leaf	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	leaf	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	flower	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	osmads13-3 osmads3-4 displayed a loss of floral meristem determinacy and generated abundant carpelloid structures containing severe defective ovules in the flower center, which were not detectable in the single mutant
OsMADS13	Os12g0207000	LOC_Os12g10540	flower	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Furthermore, the defects of osmads13-3 dl-sup6 flowers appeared identical to those of dl-sup6, and the OsMADS13 expression was undetectable in dl-sup6 flowers
OsMADS13	Os12g0207000	LOC_Os12g10540	flower	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Collectively, we propose a model to illustrate the role of OsMADS3, DL, and OsMADS13 in the specification of flower organ identity and meristem determinacy in rice
OsMADS13	Os12g0207000	LOC_Os12g10540	seed development	OsMADS13, a novel rice MADS-box gene expressed during ovule development	Our results suggest that OsMADS13 is the ortholog of ZAG2 and ZMM1 and might play a role in rice ovule and seed development
OsMADS13	Os12g0207000	LOC_Os12g10540	meristem	The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice	Furthermore, making carpels inside carpels, the osmads13 flower is indeterminate, showing that OsMADS13 also has a function in floral meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	flower	The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice	Furthermore, making carpels inside carpels, the osmads13 flower is indeterminate, showing that OsMADS13 also has a function in floral meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	seed	OsMADS13, a novel rice MADS-box gene expressed during ovule development	Our results suggest that OsMADS13 is the ortholog of ZAG2 and ZMM1 and might play a role in rice ovule and seed development
OsMADS13	Os12g0207000	LOC_Os12g10540	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	osmads13-3 osmads3-4 displayed a loss of floral meristem determinacy and generated abundant carpelloid structures containing severe defective ovules in the flower center, which were not detectable in the single mutant
OsMADS13	Os12g0207000	LOC_Os12g10540	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	This indicates that OsMADS3 plays a synergistic role with OsMADS13 in both ovule development and floral meristem termination
OsMADS13	Os12g0207000	LOC_Os12g10540	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	These observations suggest that DL and OsMADS13 may function in the same pathway specifying the identity of carpel/ovule and floral meristem
OsMADS13	Os12g0207000	LOC_Os12g10540	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Collectively, we propose a model to illustrate the role of OsMADS3, DL, and OsMADS13 in the specification of flower organ identity and meristem determinacy in rice
OsMADS13	Os12g0207000	LOC_Os12g10540	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	osmads13-3 osmads3-4 displayed a loss of floral meristem determinacy and generated abundant carpelloid structures containing severe defective ovules in the flower center, which were not detectable in the single mutant
OsMADS13	Os12g0207000	LOC_Os12g10540	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	This indicates that OsMADS3 plays a synergistic role with OsMADS13 in both ovule development and floral meristem termination
OsMADS13	Os12g0207000	LOC_Os12g10540	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	These observations suggest that DL and OsMADS13 may function in the same pathway specifying the identity of carpel/ovule and floral meristem
OsMADS13	Os12g0207000	LOC_Os12g10540	floral meristem	The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice	Furthermore, making carpels inside carpels, the osmads13 flower is indeterminate, showing that OsMADS13 also has a function in floral meristem determinacy
OsMADS13	Os12g0207000	LOC_Os12g10540	sterile	The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice	We show that the osmads13 mutant is female sterile and that ovules are converted into carpelloid structures
OsMADS13	Os12g0207000	LOC_Os12g10540	transcription factor	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	Expression studies and preliminary analyses of two upregulated Zinc-finger transcription factor encoding genes indicate that our dataset represents a valuable resource for the identification of both OsMADS13 target genes and novel players in rice ovule development
OsMADS13	Os12g0207000	LOC_Os12g10540	development	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules
OsMADS13	Os12g0207000	LOC_Os12g10540	development	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	Expression studies and preliminary analyses of two upregulated Zinc-finger transcription factor encoding genes indicate that our dataset represents a valuable resource for the identification of both OsMADS13 target genes and novel players in rice ovule development
OsMADS13	Os12g0207000	LOC_Os12g10540	development	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	Taken together, our study suggests that OsMADS13 is an important repressor of the carpel pathway during ovule development
OsMADS13	Os12g0207000	LOC_Os12g10540	sterility	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	In rice, the AG subfamily gene OsMADS13 is intimately involved in the determination of ovule identity, since knock-out mutant plants develop carpel-like structures in place of ovules resulting in female sterility
OsMADS13	Os12g0207000	LOC_Os12g10540	male sterility	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	In rice, the AG subfamily gene OsMADS13 is intimately involved in the determination of ovule identity, since knock-out mutant plants develop carpel-like structures in place of ovules resulting in female sterility
OsMADS13	Os12g0207000	LOC_Os12g10540	ovule	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	In rice, the AG subfamily gene OsMADS13 is intimately involved in the determination of ovule identity, since knock-out mutant plants develop carpel-like structures in place of ovules resulting in female sterility
OsMADS13	Os12g0207000	LOC_Os12g10540	ovule	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	Expression studies and preliminary analyses of two upregulated Zinc-finger transcription factor encoding genes indicate that our dataset represents a valuable resource for the identification of both OsMADS13 target genes and novel players in rice ovule development
OsMADS13	Os12g0207000	LOC_Os12g10540	ovule	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	Taken together, our study suggests that OsMADS13 is an important repressor of the carpel pathway during ovule development
OsMADS13	Os12g0207000	LOC_Os12g10540	ovule identity	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules	In rice, the AG subfamily gene OsMADS13 is intimately involved in the determination of ovule identity, since knock-out mutant plants develop carpel-like structures in place of ovules resulting in female sterility
OsMADS14	Os03g0752800	LOC_Os03g54160	floral meristem	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	A rice ortholog of Arabidopsis APETALA1, OsMADS14, was expressed in the floral meristem in wild-type but not in RFT1 RNAi plants, suggesting that OsMADS14 is activated by RFT1 protein in the SAM after the transition to flowering
OsMADS14	Os03g0752800	LOC_Os03g54160	heading date	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	RT-PCR analyses of the OsMADS50 KO and ubiquitin (ubi):OsMADS50 plants showed that OsMADS50 is an upstream regulator of OsMADS1, OsMADS14, OsMADS15, OsMADS18, and Hd (Heading date)3a, but works either parallel with or downstream of Hd1 and O
OsMADS14	Os03g0752800	LOC_Os03g54160	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	A rice ortholog of Arabidopsis APETALA1, OsMADS14, was expressed in the floral meristem in wild-type but not in RFT1 RNAi plants, suggesting that OsMADS14 is activated by RFT1 protein in the SAM after the transition to flowering
OsMADS14	Os03g0752800	LOC_Os03g54160	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	Transcript levels of three flowering regulators-Ehd1, OsMADS14, and Hd3a-were decreased in these mutants, whereas those of OsGI and Hd1 were unchanged
OsMADS14	Os03g0752800	LOC_Os03g54160	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	These results indicate that OsMADS51 is a flowering promoter, particularly in SDs, and that this gene functions upstream of Ehd1, OsMADS14, and Hd3a
OsMADS14	Os03g0752800	LOC_Os03g54160	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a
OsMADS14	Os03g0752800	LOC_Os03g54160	floral	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	A rice ortholog of Arabidopsis APETALA1, OsMADS14, was expressed in the floral meristem in wild-type but not in RFT1 RNAi plants, suggesting that OsMADS14 is activated by RFT1 protein in the SAM after the transition to flowering
OsMADS14	Os03g0752800	LOC_Os03g54160	meristem	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	A rice ortholog of Arabidopsis APETALA1, OsMADS14, was expressed in the floral meristem in wild-type but not in RFT1 RNAi plants, suggesting that OsMADS14 is activated by RFT1 protein in the SAM after the transition to flowering
OsMADS14	Os03g0752800	LOC_Os03g54160	flower	Functional characterization of rice OsDof12	These results suggested that OsDof12 might regulate flowering by controlling the expression of Hd3a and OsMADS14
OsMADS14	Os03g0752800	LOC_Os03g54160	meristem	The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.	We demonstrate that OsMADS14 and OsMADS15, in addition to their function of specifying meristem identity, are also required to specify palea and lodicule identities
OsMADS14	Os03g0752800	LOC_Os03g54160	palea	The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.	We demonstrate that OsMADS14 and OsMADS15, in addition to their function of specifying meristem identity, are also required to specify palea and lodicule identities
OsMADS14	Os03g0752800	LOC_Os03g54160	grain	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.	 Here we show that two null mutations of OsMADS14 result in a shrunken and chalky grain phenotype
OsMADS14	Os03g0752800	LOC_Os03g54160	starch	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.
OsMADS14	Os03g0752800	LOC_Os03g54160	starch	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.	 Transcriptomic profiling analyses revealed that the loss-of-function of OsMADS14 leads to significantly downregulated expression of many core starch synthesis genes, including OsAGPL2 and Waxy
OsMADS14	Os03g0752800	LOC_Os03g54160	starch	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.	 Our study thus demonstrates that OsMADS14 plays an essential role in the synthesis of storage starch and provides novel insights into the underlying molecular mechanism that may be used to improve rice cultivars by molecular breeding
OsMADS14	Os03g0752800	LOC_Os03g54160	breeding	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.	 Our study thus demonstrates that OsMADS14 plays an essential role in the synthesis of storage starch and provides novel insights into the underlying molecular mechanism that may be used to improve rice cultivars by molecular breeding
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	height	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Rice seedlings overexpressing OsMADS15 showed precocious phenotypes of early internode elongation, shoot-borne crown root development, reduced plant height and early flowering
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	root	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Rice seedlings overexpressing OsMADS15 showed precocious phenotypes of early internode elongation, shoot-borne crown root development, reduced plant height and early flowering
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	root	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	These results clearly indicate that OsMADS15 plays important roles not only in transition to reproductive development, but also in crown root development
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	reproductive	DEP and AFO regulate reproductive habit in rice	Thus, OsMADS1 and OsMADS15 are both required to ensure sexual reproduction in rice and mutations of them lead to the switch of reproductive habit from sexual to asexual in rice
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	tillering	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	In the tillering stage, the OsMADS15 overexpression rice plants tillered later and less than the wild type, and in the maturity stage, the culms of the overexpression lines bore more stem nodes
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	crown	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Rice seedlings overexpressing OsMADS15 showed precocious phenotypes of early internode elongation, shoot-borne crown root development, reduced plant height and early flowering
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	crown	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	These results clearly indicate that OsMADS15 plays important roles not only in transition to reproductive development, but also in crown root development
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	flowering time	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	heading date	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	RT-PCR analyses of the OsMADS50 KO and ubiquitin (ubi):OsMADS50 plants showed that OsMADS50 is an upstream regulator of OsMADS1, OsMADS14, OsMADS15, OsMADS18, and Hd (Heading date)3a, but works either parallel with or downstream of Hd1 and O
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	panicle	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	The panicles of OsMADS15 transgenic rice plants were largely compromised for growth and branching in comparison with wild type
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	reproductive	DEP and AFO regulate reproductive habit in rice	DEP and AFO regulate reproductive habit in rice
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	stem	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	In the tillering stage, the OsMADS15 overexpression rice plants tillered later and less than the wild type, and in the maturity stage, the culms of the overexpression lines bore more stem nodes
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	root development	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Rice seedlings overexpressing OsMADS15 showed precocious phenotypes of early internode elongation, shoot-borne crown root development, reduced plant height and early flowering
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	root development	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	These results clearly indicate that OsMADS15 plays important roles not only in transition to reproductive development, but also in crown root development
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	transcription factor	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	branching	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	The panicles of OsMADS15 transgenic rice plants were largely compromised for growth and branching in comparison with wild type
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	crown root	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Rice seedlings overexpressing OsMADS15 showed precocious phenotypes of early internode elongation, shoot-borne crown root development, reduced plant height and early flowering
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	crown root	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	These results clearly indicate that OsMADS15 plays important roles not only in transition to reproductive development, but also in crown root development
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	palea	DEP and AFO regulate reproductive habit in rice	In this work, we found three naturally occurring mutants in rice, namely, phoenix (pho), degenerative palea (dep), and abnormal floral organs (afo)
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	growth	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	The panicles of OsMADS15 transgenic rice plants were largely compromised for growth and branching in comparison with wild type
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	seedling	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Rice seedlings overexpressing OsMADS15 showed precocious phenotypes of early internode elongation, shoot-borne crown root development, reduced plant height and early flowering
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	shoot	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Rice seedlings overexpressing OsMADS15 showed precocious phenotypes of early internode elongation, shoot-borne crown root development, reduced plant height and early flowering
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	reproductive	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	These results clearly indicate that OsMADS15 plays important roles not only in transition to reproductive development, but also in crown root development
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	architecture	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	culm	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	In the tillering stage, the OsMADS15 overexpression rice plants tillered later and less than the wild type, and in the maturity stage, the culms of the overexpression lines bore more stem nodes
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	flower	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Rice seedlings overexpressing OsMADS15 showed precocious phenotypes of early internode elongation, shoot-borne crown root development, reduced plant height and early flowering
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	flower	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Quantitative polymerase chain reaction (PCR) results showed that expression levels of WUSCHEL-related Homeobox (WOX) gene, WOX11, and some flowering regulators were promoted in the OsMADS15 overexpression transgenic plants, indicating that OsMADS15 had a wide range of regulations
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	flower	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	floral	DEP and AFO regulate reproductive habit in rice	In this work, we found three naturally occurring mutants in rice, namely, phoenix (pho), degenerative palea (dep), and abnormal floral organs (afo)
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	meristem	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene	Further depletion of PAP2 function from these triple knockdown plants inhibited the transition of the meristem to the IM
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	tiller	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	The axillary buds developments in OsMADS15 overexpressors were accelerated, and the buds frequently grew into effective tillers
OsMADS15|DEP	Os07g0108900	LOC_Os07g01820	tiller	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	In the tillering stage, the OsMADS15 overexpression rice plants tillered later and less than the wild type, and in the maturity stage, the culms of the overexpression lines bore more stem nodes
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	palea	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	The sl1 mutant largely resembles the rice B-class gene mutant spw1; both exhibit homeotic conversions of lodicules and stamens to palea/lemma-like organs and carpels
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	sterile	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Transgenic lines from the introduced gene expressing double-stranded RNA with the OsMADS16 cDNA fragment were male-sterile and displayed alternations of lodicules and stamens, occasionally depressed palea and overgrown glume
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	floral	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	Two spw1 alleles, spw1-1 and spw1-2, show the same floral phenotype and did not affect vegetative development
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	The homeotic mutation spw1 transforms stamens and lodicules into carpels and palea-like organs, respectively
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	Based on genetic and molecular results, we postulate a model of stamen and carpel specification in rice, with DL as a novel gene controlling carpel identity and acting mutually and antagonistically to the class B gene, SPW1
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	floral	Alteration of floral organ identity in rice through ectopic expression of OsMADS16	Alteration of floral organ identity in rice through ectopic expression of OsMADS16
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	lemma	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	The sl1 mutant largely resembles the rice B-class gene mutant spw1; both exhibit homeotic conversions of lodicules and stamens to palea/lemma-like organs and carpels
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	flower	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Our results demonstrate that OsMADS16 is an AP3/DEF orthologue to specify the identities of lodicules and stamens in rice flower and also support that OsMADS4 is a PI orthologue
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	The sl1 mutant largely resembles the rice B-class gene mutant spw1; both exhibit homeotic conversions of lodicules and stamens to palea/lemma-like organs and carpels
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	We also show that SL1 specifies lodicule and stamen identities through positive transcriptional regulation of SPW1/OsMADS16 expression
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	flower	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	The flower of the double mutant, spw1 dl-sup, produces incompletely differentiated organs indefinitely after palea-like organs are produced in the position where lodicules are formed in the wild-type flower
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	palea	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	The homeotic mutation spw1 transforms stamens and lodicules into carpels and palea-like organs, respectively
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	palea	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	The flower of the double mutant, spw1 dl-sup, produces incompletely differentiated organs indefinitely after palea-like organs are produced in the position where lodicules are formed in the wild-type flower
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	Alteration of floral organ identity in rice through ectopic expression of OsMADS16	These results indicate that expression of OsMADS16 in the innermost whorl induces stamen development
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	pi	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Our results demonstrate that OsMADS16 is an AP3/DEF orthologue to specify the identities of lodicules and stamens in rice flower and also support that OsMADS4 is a PI orthologue
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	floral	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	Consistent with the mutant floral phenotype, DDF1 positively regulates B-class genes OsMADS4 and OsMADS16, and negatively regulates pistil specification gene DL
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice	We identified a cleistogamous mutant of rice harbouring a missense mutation (the 45th residue isoleucine to threonine; I45T) in the class-B MADS-box gene SUPERWOMAN1 (SPW1), which specifies the identities of lodicules (equivalent to petals) and stamens
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice	In the mutant, spw1-cls, the stamens are normal, but the lodicules are transformed homeotically to lodicule-glume mosaic organs, thereby engendering cleistogamy
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	leaf	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	We analyzed recessive mutants of two homeotic genes in rice, SUPERWOMAN1 (SPW1) and DROOPING LEAF (DL)
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	vegetative	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice	Two spw1 alleles, spw1-1 and spw1-2, show the same floral phenotype and did not affect vegetative development
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	To investigate if OsMADS16 functions as an AP3/DEF orthologue to regulate the development of lodicules and stamens in rice, we isolated its genomic sequences and characterized its functions in planta by RNA interference
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Transgenic lines from the introduced gene expressing double-stranded RNA with the OsMADS16 cDNA fragment were male-sterile and displayed alternations of lodicules and stamens, occasionally depressed palea and overgrown glume
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Our results demonstrate that OsMADS16 is an AP3/DEF orthologue to specify the identities of lodicules and stamens in rice flower and also support that OsMADS4 is a PI orthologue
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	stamen	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	We also show that SL1 specifies lodicule and stamen identities through positive transcriptional regulation of SPW1/OsMADS16 expression
OsMADS16|SPW1	Os06g0712700	LOC_Os06g49840	palea	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Transgenic lines from the introduced gene expressing double-stranded RNA with the OsMADS16 cDNA fragment were male-sterile and displayed alternations of lodicules and stamens, occasionally depressed palea and overgrown glume
OsMADS18	Os07g0605200	LOC_Os07g41370	flower	Functional characterization of OsMADS18, a member of the AP1/SQUA subfamily of MADS box genes	Overexpression of OsMADS18 in rice induced early flowering, and detailed histological analysis revealed that the formation of axillary shoot meristems was accelerated
OsMADS18	Os07g0605200	LOC_Os07g41370	meristem	Functional characterization of OsMADS18, a member of the AP1/SQUA subfamily of MADS box genes	Overexpression of OsMADS18 in rice induced early flowering, and detailed histological analysis revealed that the formation of axillary shoot meristems was accelerated
OsMADS18	Os07g0605200	LOC_Os07g41370	shoot	Functional characterization of OsMADS18, a member of the AP1/SQUA subfamily of MADS box genes	Overexpression of OsMADS18 in rice induced early flowering, and detailed histological analysis revealed that the formation of axillary shoot meristems was accelerated
OsMADS18	Os07g0605200	LOC_Os07g41370	transcription factor	Functional characterization of OsMADS18, a member of the AP1/SQUA subfamily of MADS box genes	Silencing of OsMADS18 using an RNA interference approach did not result in any visible phenotypic alteration, indicating that OsMADS18 is probably redundant with other MADS box transcription factors
OsMADS18	Os07g0605200	LOC_Os07g41370	seed	Ternary complex formation between MADS-box transcription factors and the histone fold protein NF-YB	A rice seed-specific NF-YB was identified as partner of OsMADS18 by two-hybrid screening
OsMADS18	Os07g0605200	LOC_Os07g41370	heading date	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	RT-PCR analyses of the OsMADS50 KO and ubiquitin (ubi):OsMADS50 plants showed that OsMADS50 is an upstream regulator of OsMADS1, OsMADS14, OsMADS15, OsMADS18, and Hd (Heading date)3a, but works either parallel with or downstream of Hd1 and O
OsMADS18	Os07g0605200	LOC_Os07g41370	transcription factor	OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the ABA response in rice.	The APETALA1 (AP1)/FRUITFULL (FUL)-like transcription factor OsMADS18 plays diverse functions in rice development, however, the underlying molecular mechanisms are far from fully understood
OsMADS18	Os07g0605200	LOC_Os07g41370	seedling	OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the ABA response in rice.	Here, we report that downregulation of OsMADS18 expression in the RNAi lines caused delay in seed germination and young seedling growth, whereas the overexpression (OE) of OsMADS18 produced plants with less tillers
OsMADS18	Os07g0605200	LOC_Os07g41370	development	OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the ABA response in rice.	Finally, the results from analyzing the interaction of OsMADS18 with OsMADS14, OsMADS15, and OsMADS57 suggest an essential role of OsMADS18 in rice development
OsMADS18	Os07g0605200	LOC_Os07g41370	seed	OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the ABA response in rice.	Here, we report that downregulation of OsMADS18 expression in the RNAi lines caused delay in seed germination and young seedling growth, whereas the overexpression (OE) of OsMADS18 produced plants with less tillers
OsMADS18	Os07g0605200	LOC_Os07g41370	seed germination	OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the ABA response in rice.	Here, we report that downregulation of OsMADS18 expression in the RNAi lines caused delay in seed germination and young seedling growth, whereas the overexpression (OE) of OsMADS18 produced plants with less tillers
OsMADS18	Os07g0605200	LOC_Os07g41370	nucleus	OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the ABA response in rice.	The expression of OsMADS18 could be stimulated by ABA, and ABA-stimulation triggered the cleavage of HA-OsMADS18 and the translocation of OsMADS18 from the PM to the nucleus
OsMADS18	Os07g0605200	LOC_Os07g41370	panicle	Genome-wide expression quantitative trait locus studies facilitate isolation of causal genes controlling panicle structure	By combining pQTL and eQTL data, two genes were identified as controlling panicle structure: OsMADS18 modulates the average length of the primary rachis and OsFTL1 has pleiotropic effects on the total number of secondary rachides, number of grains per panicle, plant height and the length of flag leaves
OsMADS18	Os07g0605200	LOC_Os07g41370	grains per panicle	Genome-wide expression quantitative trait locus studies facilitate isolation of causal genes controlling panicle structure	By combining pQTL and eQTL data, two genes were identified as controlling panicle structure: OsMADS18 modulates the average length of the primary rachis and OsFTL1 has pleiotropic effects on the total number of secondary rachides, number of grains per panicle, plant height and the length of flag leaves
OsMADS18	Os07g0605200	LOC_Os07g41370	height	Genome-wide expression quantitative trait locus studies facilitate isolation of causal genes controlling panicle structure	By combining pQTL and eQTL data, two genes were identified as controlling panicle structure: OsMADS18 modulates the average length of the primary rachis and OsFTL1 has pleiotropic effects on the total number of secondary rachides, number of grains per panicle, plant height and the length of flag leaves
OsMADS18	Os07g0605200	LOC_Os07g41370	plant height	Genome-wide expression quantitative trait locus studies facilitate isolation of causal genes controlling panicle structure	By combining pQTL and eQTL data, two genes were identified as controlling panicle structure: OsMADS18 modulates the average length of the primary rachis and OsFTL1 has pleiotropic effects on the total number of secondary rachides, number of grains per panicle, plant height and the length of flag leaves
OsMADS2	Os01g0883100	LOC_Os01g66030	cell division	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	We ascribe a function for OsMADS2 in controlling cell division and differentiation along the proximal-distal axis
OsMADS2	Os01g0883100	LOC_Os01g66030	cell division	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	The global architecture of transcripts regulated by OsMADS2 gives insights into the regulation of cell division and vascular differentiation that together can form this highly modified grass organ with important functions in floret opening and stamen emergence independent of the paralogous gene OsMADS4
OsMADS2	Os01g0883100	LOC_Os01g66030	architecture	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	The global architecture of transcripts regulated by OsMADS2 gives insights into the regulation of cell division and vascular differentiation that together can form this highly modified grass organ with important functions in floret opening and stamen emergence independent of the paralogous gene OsMADS4
OsMADS2	Os01g0883100	LOC_Os01g66030	organ size	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	OsMADS2 is required to trigger parenchymatous and lodicule-specific vascular development while maintaining a small organ size
OsMADS2	Os01g0883100	LOC_Os01g66030	growth	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	Our data implicate the developmentally late spatially restricted accumulation of OsMADS2 transcripts in the differentiating lodicule to control growth of these regions
OsMADS2	Os01g0883100	LOC_Os01g66030	stamen	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	Grasses have duplicated PI/GLO-like genes and in rice (Oryza sativa) one these genes, OsMADS2, controls lodicule formation without affecting stamen development
OsMADS2	Os01g0883100	LOC_Os01g66030	stamen	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	The global architecture of transcripts regulated by OsMADS2 gives insights into the regulation of cell division and vascular differentiation that together can form this highly modified grass organ with important functions in floret opening and stamen emergence independent of the paralogous gene OsMADS4
OsMADS2	Os01g0883100	LOC_Os01g66030	floral	Double-stranded RNA interference of a rice PI/GLO paralog, OsMADS2, uncovers its second-whorl-specific function in floral organ patterning	Double-stranded RNA interference of a rice PI/GLO paralog, OsMADS2, uncovers its second-whorl-specific function in floral organ patterning
OsMADS2	Os01g0883100	LOC_Os01g66030	stamen	Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development	Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development
OsMADS2	Os01g0883100	LOC_Os01g66030	development	The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.	Lodicule identity and development are specified by the action of protein complexes involving the SPW1 and OsMADS2 transcription factors
OsMADS2	Os01g0883100	LOC_Os01g66030	transcription factor	The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.	Lodicule identity and development are specified by the action of protein complexes involving the SPW1 and OsMADS2 transcription factors
OsMADS21	Os01g0886200	LOC_Os01g66290	ovule identity	Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy.	MADS21 Retains Ovule Identity Determination Activity
OsMADS22	Os02g0761000	LOC_Os02g52340	leaf	Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins	Overexpression of OsMADS22 and OsMADS55 led to abnormal floral morphologies including leaf-like sepals, whereas only OsMADS55 expression caused delayed flowering via downregulation of FLOWERING LOCUS T (FT) and SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1)
OsMADS22	Os02g0761000	LOC_Os02g52340	spikelet meristem	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy
OsMADS22	Os02g0761000	LOC_Os02g52340	flowering time	Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins	Overexpression of OsMADS55, but not OsMADS22, complemented the early flowering phenotype and ambient temperature-insensitive flowering phenotype seen in svp mutants, suggesting that OsMADS55 regulates flowering time associated with ambient temperature responses in Arabidopsis
OsMADS22	Os02g0761000	LOC_Os02g52340	floral	Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins	Overexpression of OsMADS22 and OsMADS55 led to abnormal floral morphologies including leaf-like sepals, whereas only OsMADS55 expression caused delayed flowering via downregulation of FLOWERING LOCUS T (FT) and SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1)
OsMADS22	Os02g0761000	LOC_Os02g52340	temperature	Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins	Overexpression of OsMADS55, but not OsMADS22, complemented the early flowering phenotype and ambient temperature-insensitive flowering phenotype seen in svp mutants, suggesting that OsMADS55 regulates flowering time associated with ambient temperature responses in Arabidopsis
OsMADS22	Os02g0761000	LOC_Os02g52340	meristem	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy
OsMADS22	Os02g0761000	LOC_Os02g52340	flower	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	In contrast to previously reported STMADS11-like genes, whose expression is detected in vegetative tissues, OsMADS22 is mainly expressed during embryogenesis and flower development
OsMADS22	Os02g0761000	LOC_Os02g52340	spikelet	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	Ectopic expression of OsMADS22 in transgenic rice plants resulted in aberrant floral morphogenesis, characterized by a disorganized palea, an elongated glume, and a two-floret spikelet
OsMADS22	Os02g0761000	LOC_Os02g52340	spikelet	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy
OsMADS22	Os02g0761000	LOC_Os02g52340	vegetative	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	In contrast to previously reported STMADS11-like genes, whose expression is detected in vegetative tissues, OsMADS22 is mainly expressed during embryogenesis and flower development
OsMADS22	Os02g0761000	LOC_Os02g52340	vegetative	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy
OsMADS22	Os02g0761000	LOC_Os02g52340	palea	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	Ectopic expression of OsMADS22 in transgenic rice plants resulted in aberrant floral morphogenesis, characterized by a disorganized palea, an elongated glume, and a two-floret spikelet
OsMADS22	Os02g0761000	LOC_Os02g52340	flower	Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins	Overexpression of OsMADS22 and OsMADS55 led to abnormal floral morphologies including leaf-like sepals, whereas only OsMADS55 expression caused delayed flowering via downregulation of FLOWERING LOCUS T (FT) and SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1)
OsMADS22	Os02g0761000	LOC_Os02g52340	flower	Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins	Overexpression of OsMADS55, but not OsMADS22, complemented the early flowering phenotype and ambient temperature-insensitive flowering phenotype seen in svp mutants, suggesting that OsMADS55 regulates flowering time associated with ambient temperature responses in Arabidopsis
OsMADS22	Os02g0761000	LOC_Os02g52340	floral	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	Ectopic expression of OsMADS22 in transgenic rice plants resulted in aberrant floral morphogenesis, characterized by a disorganized palea, an elongated glume, and a two-floret spikelet
OsMADS22	Os02g0761000	LOC_Os02g52340	stamen	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy	In situ hybridization analysis revealed that OsMADS22 expression is localized in the L1 layer of embryos and in developing stamen primordia
OsMADS25	Os04g0304400	LOC_Os04g23910	root	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.
OsMADS25	Os04g0304400	LOC_Os04g23910	root	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Over-expression of OsMADS25 significantly promoted lateral and primary root growth as well as shoot growth in a nitrate-dependent manner in Arabidopsis
OsMADS25	Os04g0304400	LOC_Os04g23910	root	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	OsMADS25 overexpression in transgenic rice resulted in significantly increased primary root length, lateral root number, lateral root length and shoot fresh weight in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	root	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Down-regulation of OsMADS25 in transgenic rice exhibited significantly reduced shoot and root growth in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	root	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Taken together, our findings suggest that OsMADS25 is a positive regulator control lateral and primary root development in rice
OsMADS25	Os04g0304400	LOC_Os04g23910	growth	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Over-expression of OsMADS25 significantly promoted lateral and primary root growth as well as shoot growth in a nitrate-dependent manner in Arabidopsis
OsMADS25	Os04g0304400	LOC_Os04g23910	growth	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Down-regulation of OsMADS25 in transgenic rice exhibited significantly reduced shoot and root growth in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	shoot	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Over-expression of OsMADS25 significantly promoted lateral and primary root growth as well as shoot growth in a nitrate-dependent manner in Arabidopsis
OsMADS25	Os04g0304400	LOC_Os04g23910	shoot	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	OsMADS25 overexpression in transgenic rice resulted in significantly increased primary root length, lateral root number, lateral root length and shoot fresh weight in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	shoot	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Down-regulation of OsMADS25 in transgenic rice exhibited significantly reduced shoot and root growth in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	development	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.
OsMADS25	Os04g0304400	LOC_Os04g23910	development	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Taken together, our findings suggest that OsMADS25 is a positive regulator control lateral and primary root development in rice
OsMADS25	Os04g0304400	LOC_Os04g23910	transcription factor	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.
OsMADS25	Os04g0304400	LOC_Os04g23910	transporter	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Furthermore, over-expression of OsMADS25 in transgenic rice promoted nitrate accumulation and significantly increased the expressions of nitrate transporter genes at high rates of nitrate supply while down-regulation of OsMADS25 produced the opposite effect
OsMADS25	Os04g0304400	LOC_Os04g23910	lateral root	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	OsMADS25 overexpression in transgenic rice resulted in significantly increased primary root length, lateral root number, lateral root length and shoot fresh weight in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	primary root	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Over-expression of OsMADS25 significantly promoted lateral and primary root growth as well as shoot growth in a nitrate-dependent manner in Arabidopsis
OsMADS25	Os04g0304400	LOC_Os04g23910	primary root	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	OsMADS25 overexpression in transgenic rice resulted in significantly increased primary root length, lateral root number, lateral root length and shoot fresh weight in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	primary root	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Taken together, our findings suggest that OsMADS25 is a positive regulator control lateral and primary root development in rice
OsMADS25	Os04g0304400	LOC_Os04g23910	root development	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.
OsMADS25	Os04g0304400	LOC_Os04g23910	root development	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Taken together, our findings suggest that OsMADS25 is a positive regulator control lateral and primary root development in rice
OsMADS25	Os04g0304400	LOC_Os04g23910	cytoplasm	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Our results showed that OsMADS25 protein was found in the nucleus as well as in the cytoplasm
OsMADS25	Os04g0304400	LOC_Os04g23910	nitrate	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.
OsMADS25	Os04g0304400	LOC_Os04g23910	nitrate	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Here we have investigated the role of OsMADS25 in the plant's responses to external nitrate in Oryza Sativa
OsMADS25	Os04g0304400	LOC_Os04g23910	nitrate	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	OsMADS25 overexpression in transgenic rice resulted in significantly increased primary root length, lateral root number, lateral root length and shoot fresh weight in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	nitrate	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Down-regulation of OsMADS25 in transgenic rice exhibited significantly reduced shoot and root growth in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	nitrate	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Furthermore, over-expression of OsMADS25 in transgenic rice promoted nitrate accumulation and significantly increased the expressions of nitrate transporter genes at high rates of nitrate supply while down-regulation of OsMADS25 produced the opposite effect
OsMADS25	Os04g0304400	LOC_Os04g23910	nucleus	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Our results showed that OsMADS25 protein was found in the nucleus as well as in the cytoplasm
OsMADS25	Os04g0304400	LOC_Os04g23910	nitrate transporter	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	Furthermore, over-expression of OsMADS25 in transgenic rice promoted nitrate accumulation and significantly increased the expressions of nitrate transporter genes at high rates of nitrate supply while down-regulation of OsMADS25 produced the opposite effect
OsMADS25	Os04g0304400	LOC_Os04g23910	root length	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	OsMADS25 overexpression in transgenic rice resulted in significantly increased primary root length, lateral root number, lateral root length and shoot fresh weight in the presence of nitrate
OsMADS25	Os04g0304400	LOC_Os04g23910	root number	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice	OsMADS25 overexpression in transgenic rice resulted in significantly increased primary root length, lateral root number, lateral root length and shoot fresh weight in the presence of nitrate.
OsMADS25	Os04g0304400	LOC_Os04g23910	lateral root number	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice	OsMADS25 overexpression in transgenic rice resulted in significantly increased primary root length, lateral root number, lateral root length and shoot fresh weight in the presence of nitrate.
OsMADS25	Os04g0304400	LOC_Os04g23910	lateral root length	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice	OsMADS25 overexpression in transgenic rice resulted in significantly increased primary root length, lateral root number, lateral root length and shoot fresh weight in the presence of nitrate.
OsMADS25	Os04g0304400	LOC_Os04g23910	root	OsMADS25 regulates root system development via auxin signaling in rice.	OsMADS25 regulates root system development via auxin signaling in rice.
OsMADS25	Os04g0304400	LOC_Os04g23910	root	OsMADS25 regulates root system development via auxin signaling in rice.	In spite of recent progress, the molecular mechanisms underlying the regulation of root development by OsMADS25 are not well known
OsMADS25	Os04g0304400	LOC_Os04g23910	root	OsMADS25 regulates root system development via auxin signaling in rice.	It is unclear whether OsMADS25 regulates root development via auxin signaling
OsMADS25	Os04g0304400	LOC_Os04g23910	root	OsMADS25 regulates root system development via auxin signaling in rice.	In this study, we examined the role of OsMADS25 in root development and characterized the signaling pathway through which OsMADS25 regulates root system development in rice
OsMADS25	Os04g0304400	LOC_Os04g23910	root	OsMADS25 regulates root system development via auxin signaling in rice.	OsMADS25 overexpression significantly increased, but RNAi gene silencing repressed primary root (PR) length and lateral root (LR) density
OsMADS25	Os04g0304400	LOC_Os04g23910	root	OsMADS25 regulates root system development via auxin signaling in rice.	Further study showed that OsMADS25 increased auxin accumulation in the root system by enhancing auxin biosynthesis and transport, while also reducing auxin degradation, thus stimulating root development
OsMADS25	Os04g0304400	LOC_Os04g23910	root	OsMADS25 regulates root system development via auxin signaling in rice.	Therefore, our findings reveal a molecular mechanism by which OsMADS25 modulates root system growth and development in rice, at least partilly, via Aux/IAA-based auxin signaling
OsMADS25	Os04g0304400	LOC_Os04g23910	growth	OsMADS25 regulates root system development via auxin signaling in rice.	Therefore, our findings reveal a molecular mechanism by which OsMADS25 modulates root system growth and development in rice, at least partilly, via Aux/IAA-based auxin signaling
OsMADS25	Os04g0304400	LOC_Os04g23910	development	OsMADS25 regulates root system development via auxin signaling in rice.	OsMADS25 regulates root system development via auxin signaling in rice.
OsMADS25	Os04g0304400	LOC_Os04g23910	development	OsMADS25 regulates root system development via auxin signaling in rice.	In spite of recent progress, the molecular mechanisms underlying the regulation of root development by OsMADS25 are not well known
OsMADS25	Os04g0304400	LOC_Os04g23910	development	OsMADS25 regulates root system development via auxin signaling in rice.	It is unclear whether OsMADS25 regulates root development via auxin signaling
OsMADS25	Os04g0304400	LOC_Os04g23910	development	OsMADS25 regulates root system development via auxin signaling in rice.	In this study, we examined the role of OsMADS25 in root development and characterized the signaling pathway through which OsMADS25 regulates root system development in rice
OsMADS25	Os04g0304400	LOC_Os04g23910	development	OsMADS25 regulates root system development via auxin signaling in rice.	Moreover, OsMADS25 promoted LR development in response to NO3-
OsMADS25	Os04g0304400	LOC_Os04g23910	development	OsMADS25 regulates root system development via auxin signaling in rice.	Further study showed that OsMADS25 increased auxin accumulation in the root system by enhancing auxin biosynthesis and transport, while also reducing auxin degradation, thus stimulating root development
OsMADS25	Os04g0304400	LOC_Os04g23910	development	OsMADS25 regulates root system development via auxin signaling in rice.	Therefore, our findings reveal a molecular mechanism by which OsMADS25 modulates root system growth and development in rice, at least partilly, via Aux/IAA-based auxin signaling
OsMADS25	Os04g0304400	LOC_Os04g23910	root development	OsMADS25 regulates root system development via auxin signaling in rice.	In spite of recent progress, the molecular mechanisms underlying the regulation of root development by OsMADS25 are not well known
OsMADS25	Os04g0304400	LOC_Os04g23910	root development	OsMADS25 regulates root system development via auxin signaling in rice.	It is unclear whether OsMADS25 regulates root development via auxin signaling
OsMADS25	Os04g0304400	LOC_Os04g23910	root development	OsMADS25 regulates root system development via auxin signaling in rice.	In this study, we examined the role of OsMADS25 in root development and characterized the signaling pathway through which OsMADS25 regulates root system development in rice
OsMADS25	Os04g0304400	LOC_Os04g23910	root development	OsMADS25 regulates root system development via auxin signaling in rice.	Further study showed that OsMADS25 increased auxin accumulation in the root system by enhancing auxin biosynthesis and transport, while also reducing auxin degradation, thus stimulating root development
OsMADS25	Os04g0304400	LOC_Os04g23910	auxin	OsMADS25 regulates root system development via auxin signaling in rice.	OsMADS25 regulates root system development via auxin signaling in rice.
OsMADS25	Os04g0304400	LOC_Os04g23910	auxin	OsMADS25 regulates root system development via auxin signaling in rice.	It is unclear whether OsMADS25 regulates root development via auxin signaling
OsMADS25	Os04g0304400	LOC_Os04g23910	auxin	OsMADS25 regulates root system development via auxin signaling in rice.	Further study showed that OsMADS25 increased auxin accumulation in the root system by enhancing auxin biosynthesis and transport, while also reducing auxin degradation, thus stimulating root development
OsMADS25	Os04g0304400	LOC_Os04g23910	auxin	OsMADS25 regulates root system development via auxin signaling in rice.	More importantly, OsMADS25 was found to regulate OsIAA14 expression directly by binding to the CArG-box in the promoter region of OsIAA14, which encodes an Aux/IAA transcriptional repressor of auxin signaling
OsMADS25	Os04g0304400	LOC_Os04g23910	auxin	OsMADS25 regulates root system development via auxin signaling in rice.	Therefore, our findings reveal a molecular mechanism by which OsMADS25 modulates root system growth and development in rice, at least partilly, via Aux/IAA-based auxin signaling
OsMADS25	Os04g0304400	LOC_Os04g23910	lateral root	OsMADS25 regulates root system development via auxin signaling in rice.	OsMADS25 overexpression significantly increased, but RNAi gene silencing repressed primary root (PR) length and lateral root (LR) density
OsMADS25	Os04g0304400	LOC_Os04g23910	primary root	OsMADS25 regulates root system development via auxin signaling in rice.	OsMADS25 overexpression significantly increased, but RNAi gene silencing repressed primary root (PR) length and lateral root (LR) density
OsMADS25	Os04g0304400	LOC_Os04g23910	auxin biosynthesis	OsMADS25 regulates root system development via auxin signaling in rice.	Further study showed that OsMADS25 increased auxin accumulation in the root system by enhancing auxin biosynthesis and transport, while also reducing auxin degradation, thus stimulating root development
OsMADS25	Os04g0304400	LOC_Os04g23910	transcription factor	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
OsMADS25	Os04g0304400	LOC_Os04g23910	root	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
OsMADS25	Os04g0304400	LOC_Os04g23910	root	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	In this study, we describe that OsMADS25 is required for the root growth as well as salinity tolerance, via maintaining ROS homeostasis in rice (Oryza sativa)
OsMADS25	Os04g0304400	LOC_Os04g23910	root	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Overexpression of OsMADS25 remarkably enhanced the primary root (PR) length and lateral root (LR) density, whereas RNAi silence of this gene reduced PR elongation significantly, with altered ROS accumulation in the root tip
OsMADS25	Os04g0304400	LOC_Os04g23910	root	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Interestingly, overexpression of OsMADS25 raised the root sensitivity to exogenous ABA, and the expression of ABA-dependent stress-responsive genes was elevated greatly in overexpression plants under salinity stress
OsMADS25	Os04g0304400	LOC_Os04g23910	root	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Taken together, our findings reveal that OsMADS25 might be an important transcriptional regulator that regulates the root growth and confers salinity tolerance in rice via the ABA-mediated regulatory pathway and ROS scavenging
OsMADS25	Os04g0304400	LOC_Os04g23910	growth	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
OsMADS25	Os04g0304400	LOC_Os04g23910	growth	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	In this study, we describe that OsMADS25 is required for the root growth as well as salinity tolerance, via maintaining ROS homeostasis in rice (Oryza sativa)
OsMADS25	Os04g0304400	LOC_Os04g23910	growth	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Taken together, our findings reveal that OsMADS25 might be an important transcriptional regulator that regulates the root growth and confers salinity tolerance in rice via the ABA-mediated regulatory pathway and ROS scavenging
OsMADS25	Os04g0304400	LOC_Os04g23910	oxidative stress	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Expectedly, overexpression of OsMADS25 significantly enhanced the tolerance to salinity and oxidative stress in rice plants, with the elevated activity of antioxidant enzymes, increased accumulation of osmoprotective solute proline and reduced frequency of open stoma
OsMADS25	Os04g0304400	LOC_Os04g23910	salinity	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
OsMADS25	Os04g0304400	LOC_Os04g23910	salinity	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	In this study, we describe that OsMADS25 is required for the root growth as well as salinity tolerance, via maintaining ROS homeostasis in rice (Oryza sativa)
OsMADS25	Os04g0304400	LOC_Os04g23910	salinity	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Expectedly, overexpression of OsMADS25 significantly enhanced the tolerance to salinity and oxidative stress in rice plants, with the elevated activity of antioxidant enzymes, increased accumulation of osmoprotective solute proline and reduced frequency of open stoma
OsMADS25	Os04g0304400	LOC_Os04g23910	salinity	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Interestingly, overexpression of OsMADS25 raised the root sensitivity to exogenous ABA, and the expression of ABA-dependent stress-responsive genes was elevated greatly in overexpression plants under salinity stress
OsMADS25	Os04g0304400	LOC_Os04g23910	salinity	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Taken together, our findings reveal that OsMADS25 might be an important transcriptional regulator that regulates the root growth and confers salinity tolerance in rice via the ABA-mediated regulatory pathway and ROS scavenging
OsMADS25	Os04g0304400	LOC_Os04g23910	tolerance	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
OsMADS25	Os04g0304400	LOC_Os04g23910	tolerance	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Expectedly, overexpression of OsMADS25 significantly enhanced the tolerance to salinity and oxidative stress in rice plants, with the elevated activity of antioxidant enzymes, increased accumulation of osmoprotective solute proline and reduced frequency of open stoma
OsMADS25	Os04g0304400	LOC_Os04g23910	tolerance	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Taken together, our findings reveal that OsMADS25 might be an important transcriptional regulator that regulates the root growth and confers salinity tolerance in rice via the ABA-mediated regulatory pathway and ROS scavenging
OsMADS25	Os04g0304400	LOC_Os04g23910	oxidative	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Expectedly, overexpression of OsMADS25 significantly enhanced the tolerance to salinity and oxidative stress in rice plants, with the elevated activity of antioxidant enzymes, increased accumulation of osmoprotective solute proline and reduced frequency of open stoma
OsMADS25	Os04g0304400	LOC_Os04g23910	auxin	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	In addition, OsMADS25 seemed to promote auxin signaling by activating OsYUC4 transcription
OsMADS25	Os04g0304400	LOC_Os04g23910	stress	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Expectedly, overexpression of OsMADS25 significantly enhanced the tolerance to salinity and oxidative stress in rice plants, with the elevated activity of antioxidant enzymes, increased accumulation of osmoprotective solute proline and reduced frequency of open stoma
OsMADS25	Os04g0304400	LOC_Os04g23910	stress	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Interestingly, overexpression of OsMADS25 raised the root sensitivity to exogenous ABA, and the expression of ABA-dependent stress-responsive genes was elevated greatly in overexpression plants under salinity stress
OsMADS25	Os04g0304400	LOC_Os04g23910	salinity stress	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Interestingly, overexpression of OsMADS25 raised the root sensitivity to exogenous ABA, and the expression of ABA-dependent stress-responsive genes was elevated greatly in overexpression plants under salinity stress
OsMADS25	Os04g0304400	LOC_Os04g23910	homeostasis	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	In this study, we describe that OsMADS25 is required for the root growth as well as salinity tolerance, via maintaining ROS homeostasis in rice (Oryza sativa)
OsMADS25	Os04g0304400	LOC_Os04g23910	lateral root	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Overexpression of OsMADS25 remarkably enhanced the primary root (PR) length and lateral root (LR) density, whereas RNAi silence of this gene reduced PR elongation significantly, with altered ROS accumulation in the root tip
OsMADS25	Os04g0304400	LOC_Os04g23910	primary root	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Overexpression of OsMADS25 remarkably enhanced the primary root (PR) length and lateral root (LR) density, whereas RNAi silence of this gene reduced PR elongation significantly, with altered ROS accumulation in the root tip
OsMADS25	Os04g0304400	LOC_Os04g23910	transcriptional regulator	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	Taken together, our findings reveal that OsMADS25 might be an important transcriptional regulator that regulates the root growth and confers salinity tolerance in rice via the ABA-mediated regulatory pathway and ROS scavenging
OsMADS26	Os08g0112700	LOC_Os08g02070	shoot	Further characterization of a rice AGL12 group MADS-box gene, OsMADS26	Transcript levels of OsMADS26 were increased in an age-dependent manner in the shoots and roots
OsMADS26	Os08g0112700	LOC_Os08g02070	jasmonate	Further characterization of a rice AGL12 group MADS-box gene, OsMADS26	Microarray analyses using this inducible system showed that biosynthesis genes for jasmonate, ethylene, and reactive oxygen species, as well as putative downstream targets involved in the stress-related process, were up-regulated in OsMADS26-overexpressing plants
OsMADS26	Os08g0112700	LOC_Os08g02070	root	Further characterization of a rice AGL12 group MADS-box gene, OsMADS26	Transcript levels of OsMADS26 were increased in an age-dependent manner in the shoots and roots
OsMADS26	Os08g0112700	LOC_Os08g02070	ethylene	Further characterization of a rice AGL12 group MADS-box gene, OsMADS26	Microarray analyses using this inducible system showed that biosynthesis genes for jasmonate, ethylene, and reactive oxygen species, as well as putative downstream targets involved in the stress-related process, were up-regulated in OsMADS26-overexpressing plants
OsMADS26	Os08g0112700	LOC_Os08g02070	drought tolerance	OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice	OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice
OsMADS26	Os08g0112700	LOC_Os08g02070	resistance	OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice	OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice
OsMADS26	Os08g0112700	LOC_Os08g02070	pathogen resistance	OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice	OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice
OsMADS26	Os08g0112700	LOC_Os08g02070	pathogen	OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice	OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice
OsMADS26	Os08g0112700	LOC_Os08g02070	stress response	OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice	Over-expression of the OsMADS26 gene in rice (Oryza sativa) has revealed a possible function related to stress response
OsMADS27	Os02g0579600	LOC_Os02g36924	root	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).
OsMADS27	Os02g0579600	LOC_Os02g36924	root	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Here we investigated the roles of OsMADS27 in the root development in response to NO3- availability
OsMADS27	Os02g0579600	LOC_Os02g36924	root	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Constitutive expression of OsMADS27 significantly inhibited the elongation of primary root (PR), but enhanced lateral root (LR) formation in a NO3--dependent manner
OsMADS27	Os02g0579600	LOC_Os02g36924	root	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 ABA is reported to play an important role in mediating the effects of NO3- on the root development, thus it is supposed that OsMADS27 might regulate the root growth and development by ABA pathway
OsMADS27	Os02g0579600	LOC_Os02g36924	root	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 The root growth and development in OsMADS27 overexpression lines was shown to be more sensitive to exogenous ABA than wild type
OsMADS27	Os02g0579600	LOC_Os02g36924	root	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Taken together, our findings suggested that OsMADS27 is an important regulator controlling the root system development and adaption to osmotic stress in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	growth	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 is one of the ANR1-like homologues in rice, whreas its functions in plant growth and development as well as the abiotic stress responses remain unclear
OsMADS27	Os02g0579600	LOC_Os02g36924	growth	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 ABA is reported to play an important role in mediating the effects of NO3- on the root development, thus it is supposed that OsMADS27 might regulate the root growth and development by ABA pathway
OsMADS27	Os02g0579600	LOC_Os02g36924	growth	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 The root growth and development in OsMADS27 overexpression lines was shown to be more sensitive to exogenous ABA than wild type
OsMADS27	Os02g0579600	LOC_Os02g36924	development	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).
OsMADS27	Os02g0579600	LOC_Os02g36924	development	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 is one of the ANR1-like homologues in rice, whreas its functions in plant growth and development as well as the abiotic stress responses remain unclear
OsMADS27	Os02g0579600	LOC_Os02g36924	development	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Here we investigated the roles of OsMADS27 in the root development in response to NO3- availability
OsMADS27	Os02g0579600	LOC_Os02g36924	development	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 ABA is reported to play an important role in mediating the effects of NO3- on the root development, thus it is supposed that OsMADS27 might regulate the root growth and development by ABA pathway
OsMADS27	Os02g0579600	LOC_Os02g36924	development	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 The root growth and development in OsMADS27 overexpression lines was shown to be more sensitive to exogenous ABA than wild type
OsMADS27	Os02g0579600	LOC_Os02g36924	development	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Taken together, our findings suggested that OsMADS27 is an important regulator controlling the root system development and adaption to osmotic stress in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	salt	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).
OsMADS27	Os02g0579600	LOC_Os02g36924	salt	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 More importantly, OsMADS27 overexpression could enhance the salt tolerance
OsMADS27	Os02g0579600	LOC_Os02g36924	tolerance	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).
OsMADS27	Os02g0579600	LOC_Os02g36924	tolerance	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 More importantly, OsMADS27 overexpression could enhance the salt tolerance
OsMADS27	Os02g0579600	LOC_Os02g36924	abiotic stress	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 is one of the ANR1-like homologues in rice, whreas its functions in plant growth and development as well as the abiotic stress responses remain unclear
OsMADS27	Os02g0579600	LOC_Os02g36924	 ABA 	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 ABA is reported to play an important role in mediating the effects of NO3- on the root development, thus it is supposed that OsMADS27 might regulate the root growth and development by ABA pathway
OsMADS27	Os02g0579600	LOC_Os02g36924	 ABA 	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 The root growth and development in OsMADS27 overexpression lines was shown to be more sensitive to exogenous ABA than wild type
OsMADS27	Os02g0579600	LOC_Os02g36924	 ABA 	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Moreover, under NO3- conditions, higher levels of ABA accumulates in OsMADS27 overexpression plants
OsMADS27	Os02g0579600	LOC_Os02g36924	root development	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).
OsMADS27	Os02g0579600	LOC_Os02g36924	root development	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Here we investigated the roles of OsMADS27 in the root development in response to NO3- availability
OsMADS27	Os02g0579600	LOC_Os02g36924	root development	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 ABA is reported to play an important role in mediating the effects of NO3- on the root development, thus it is supposed that OsMADS27 might regulate the root growth and development by ABA pathway
OsMADS27	Os02g0579600	LOC_Os02g36924	salt tolerance	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).
OsMADS27	Os02g0579600	LOC_Os02g36924	salt tolerance	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 More importantly, OsMADS27 overexpression could enhance the salt tolerance
OsMADS27	Os02g0579600	LOC_Os02g36924	stress	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 is one of the ANR1-like homologues in rice, whreas its functions in plant growth and development as well as the abiotic stress responses remain unclear
OsMADS27	Os02g0579600	LOC_Os02g36924	stress	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Taken together, our findings suggested that OsMADS27 is an important regulator controlling the root system development and adaption to osmotic stress in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	biotic stress	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 is one of the ANR1-like homologues in rice, whreas its functions in plant growth and development as well as the abiotic stress responses remain unclear
OsMADS27	Os02g0579600	LOC_Os02g36924	transporter	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Furthermore, OsMADS27 overexpression promoted NO3- accumulation as well as the expression of NO3- transporter genes
OsMADS27	Os02g0579600	LOC_Os02g36924	ABA	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 ABA is reported to play an important role in mediating the effects of NO3- on the root development, thus it is supposed that OsMADS27 might regulate the root growth and development by ABA pathway
OsMADS27	Os02g0579600	LOC_Os02g36924	ABA	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 The root growth and development in OsMADS27 overexpression lines was shown to be more sensitive to exogenous ABA than wild type
OsMADS27	Os02g0579600	LOC_Os02g36924	ABA	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Moreover, under NO3- conditions, higher levels of ABA accumulates in OsMADS27 overexpression plants
OsMADS27	Os02g0579600	LOC_Os02g36924	lateral root	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Constitutive expression of OsMADS27 significantly inhibited the elongation of primary root (PR), but enhanced lateral root (LR) formation in a NO3--dependent manner
OsMADS27	Os02g0579600	LOC_Os02g36924	primary root	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Constitutive expression of OsMADS27 significantly inhibited the elongation of primary root (PR), but enhanced lateral root (LR) formation in a NO3--dependent manner
OsMADS27	Os02g0579600	LOC_Os02g36924	stress response	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 is one of the ANR1-like homologues in rice, whreas its functions in plant growth and development as well as the abiotic stress responses remain unclear
OsMADS27	Os02g0579600	LOC_Os02g36924	plant growth	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	OsMADS27 is one of the ANR1-like homologues in rice, whreas its functions in plant growth and development as well as the abiotic stress responses remain unclear
OsMADS27	Os02g0579600	LOC_Os02g36924	NO3- transporter	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	 Furthermore, OsMADS27 overexpression promoted NO3- accumulation as well as the expression of NO3- transporter genes
OsMADS27	Os02g0579600	LOC_Os02g36924	transcription factor	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In this study, we identified functions of a nitrate-responsive miR444:MADS-box transcription factor OsMADS27 module and its downstream targets mediating rice root growth and stress responses
OsMADS27	Os02g0579600	LOC_Os02g36924	root	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In this study, we identified functions of a nitrate-responsive miR444:MADS-box transcription factor OsMADS27 module and its downstream targets mediating rice root growth and stress responses
OsMADS27	Os02g0579600	LOC_Os02g36924	root	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	root	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In agreement with this, overexpression of miRNA-resistant OsMADS27 improved root development and tolerance to abiotic stresses, while its silencing suppressed root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In this study, we identified functions of a nitrate-responsive miR444:MADS-box transcription factor OsMADS27 module and its downstream targets mediating rice root growth and stress responses
OsMADS27	Os02g0579600	LOC_Os02g36924	growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In agreement with this, overexpression of miRNA-resistant OsMADS27 improved root development and tolerance to abiotic stresses, while its silencing suppressed root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	development	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In agreement with this, overexpression of miRNA-resistant OsMADS27 improved root development and tolerance to abiotic stresses, while its silencing suppressed root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	auxin	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	tolerance	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In agreement with this, overexpression of miRNA-resistant OsMADS27 improved root development and tolerance to abiotic stresses, while its silencing suppressed root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	tolerance	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 OsMADS27 mediated robust stress tolerance in plants through its ability to bind to the promoters of specific stress regulators, as observed in ChIP-seq analysis
OsMADS27	Os02g0579600	LOC_Os02g36924	abiotic stress	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In agreement with this, overexpression of miRNA-resistant OsMADS27 improved root development and tolerance to abiotic stresses, while its silencing suppressed root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	root development	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In agreement with this, overexpression of miRNA-resistant OsMADS27 improved root development and tolerance to abiotic stresses, while its silencing suppressed root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	stress	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In this study, we identified functions of a nitrate-responsive miR444:MADS-box transcription factor OsMADS27 module and its downstream targets mediating rice root growth and stress responses
OsMADS27	Os02g0579600	LOC_Os02g36924	stress	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 OsMADS27 mediated robust stress tolerance in plants through its ability to bind to the promoters of specific stress regulators, as observed in ChIP-seq analysis
OsMADS27	Os02g0579600	LOC_Os02g36924	biotic stress	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In agreement with this, overexpression of miRNA-resistant OsMADS27 improved root development and tolerance to abiotic stresses, while its silencing suppressed root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	stress tolerance	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 OsMADS27 mediated robust stress tolerance in plants through its ability to bind to the promoters of specific stress regulators, as observed in ChIP-seq analysis
OsMADS27	Os02g0579600	LOC_Os02g36924	nitrate	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	root growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In this study, we identified functions of a nitrate-responsive miR444:MADS-box transcription factor OsMADS27 module and its downstream targets mediating rice root growth and stress responses
OsMADS27	Os02g0579600	LOC_Os02g36924	root growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	root growth	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In agreement with this, overexpression of miRNA-resistant OsMADS27 improved root development and tolerance to abiotic stresses, while its silencing suppressed root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	stress response	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 In this study, we identified functions of a nitrate-responsive miR444:MADS-box transcription factor OsMADS27 module and its downstream targets mediating rice root growth and stress responses
OsMADS27	Os02g0579600	LOC_Os02g36924	nitrate transporter	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	 Although miR444 has the potential to target multiple genes, we identified OsMADS27 as the major miR444 target that regulates the expression of nitrate transporters, as well as several key genes including expansins, and those associated with auxin signalling, to promote root growth
OsMADS27	Os02g0579600	LOC_Os02g36924	nitrogen	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 Our results reveal the role of nitrate-responsive OsMADS27 and its downstream target genes in salt tolerance, providing a molecular mechanism for the enhancement of salt tolerance by nitrogen fertilizers in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	grain	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 overexpression increased grain yield under salt stress in the presence of sufficient nitrate, suggesting that OsMADS27 is a promising candidate for the improvement of salt tolerance in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	grain yield	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 overexpression increased grain yield under salt stress in the presence of sufficient nitrate, suggesting that OsMADS27 is a promising candidate for the improvement of salt tolerance in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	salt	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.
OsMADS27	Os02g0579600	LOC_Os02g36924	salt	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 Here, we show that nitrate-dependent salt tolerance is mediated by OsMADS27 in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	salt	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 knockout mutants are more sensitive to salt stress than the wild type, whereas OsMADS27 overexpression lines are more tolerant
OsMADS27	Os02g0579600	LOC_Os02g36924	salt	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 Our results reveal the role of nitrate-responsive OsMADS27 and its downstream target genes in salt tolerance, providing a molecular mechanism for the enhancement of salt tolerance by nitrogen fertilizers in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	salt	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 overexpression increased grain yield under salt stress in the presence of sufficient nitrate, suggesting that OsMADS27 is a promising candidate for the improvement of salt tolerance in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	tolerance	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.
OsMADS27	Os02g0579600	LOC_Os02g36924	tolerance	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 Here, we show that nitrate-dependent salt tolerance is mediated by OsMADS27 in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	tolerance	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 Our results reveal the role of nitrate-responsive OsMADS27 and its downstream target genes in salt tolerance, providing a molecular mechanism for the enhancement of salt tolerance by nitrogen fertilizers in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	tolerance	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 overexpression increased grain yield under salt stress in the presence of sufficient nitrate, suggesting that OsMADS27 is a promising candidate for the improvement of salt tolerance in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	yield	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 overexpression increased grain yield under salt stress in the presence of sufficient nitrate, suggesting that OsMADS27 is a promising candidate for the improvement of salt tolerance in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	salt tolerance	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.
OsMADS27	Os02g0579600	LOC_Os02g36924	salt tolerance	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 Here, we show that nitrate-dependent salt tolerance is mediated by OsMADS27 in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	salt tolerance	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 Our results reveal the role of nitrate-responsive OsMADS27 and its downstream target genes in salt tolerance, providing a molecular mechanism for the enhancement of salt tolerance by nitrogen fertilizers in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	salt tolerance	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 overexpression increased grain yield under salt stress in the presence of sufficient nitrate, suggesting that OsMADS27 is a promising candidate for the improvement of salt tolerance in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	salt stress	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 knockout mutants are more sensitive to salt stress than the wild type, whereas OsMADS27 overexpression lines are more tolerant
OsMADS27	Os02g0579600	LOC_Os02g36924	salt stress	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 overexpression increased grain yield under salt stress in the presence of sufficient nitrate, suggesting that OsMADS27 is a promising candidate for the improvement of salt tolerance in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	stress	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 knockout mutants are more sensitive to salt stress than the wild type, whereas OsMADS27 overexpression lines are more tolerant
OsMADS27	Os02g0579600	LOC_Os02g36924	stress	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 OsMADS27 overexpression increased grain yield under salt stress in the presence of sufficient nitrate, suggesting that OsMADS27 is a promising candidate for the improvement of salt tolerance in rice
OsMADS27	Os02g0579600	LOC_Os02g36924	homeostasis	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 Transcriptomic analyses revealed that OsMADS27 upregulates the expression of a number of known stress-responsive genes as well as those involved in ion homeostasis and antioxidation
OsMADS27	Os02g0579600	LOC_Os02g36924	nitrate	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 The expression of OsMADS27 is specifically induced by nitrate
OsMADS27	Os02g0579600	LOC_Os02g36924	nitrate	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	 The salt-inducible expression of OsMADS27 is also nitrate dependent
OsMADS29	Os02g0170300	LOC_Os02g07430	dwarf	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis	Ectopic expression of MADS29 resulted in a severely dwarfed phenotype, exhibiting elevated levels of cytokinin, thereby suggesting that cytokinin biosynthesis pathway could be one of the major targets of OsMADS29
OsMADS29	Os02g0170300	LOC_Os02g07430	pericarp	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)	Our analyses show that OsMADS29 is expressed in female reproductive organs including the ovule, ovule vasculature, and the whole seed except for the outer layer cells of the pericarp
OsMADS29	Os02g0170300	LOC_Os02g07430	cytokinin	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis	Ectopic expression of MADS29 resulted in a severely dwarfed phenotype, exhibiting elevated levels of cytokinin, thereby suggesting that cytokinin biosynthesis pathway could be one of the major targets of OsMADS29
OsMADS29	Os02g0170300	LOC_Os02g07430	cytokinin	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis	Overexpression of OsMADS29 in heterologous BY2 cells was found to mimic the effects of exogenous application of cytokinins that causes differentiation of proplastids to starch-containing amyloplasts and activation of genes involved in the starch biosynthesis pathway
OsMADS29	Os02g0170300	LOC_Os02g07430	seed development	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)	Our results suggest that OsMADS29 has important functions in seed development of rice by regulating cell degeneration of maternal tissues
OsMADS29	Os02g0170300	LOC_Os02g07430	seed development	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)
OsMADS29	Os02g0170300	LOC_Os02g07430	seed	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)	Our analyses show that OsMADS29 is expressed in female reproductive organs including the ovule, ovule vasculature, and the whole seed except for the outer layer cells of the pericarp
OsMADS29	Os02g0170300	LOC_Os02g07430	seed	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)	Knock-down of OsMADS29 by double-stranded RNA-mediated interference (RNAi) results in shriveled and/or aborted seeds
OsMADS29	Os02g0170300	LOC_Os02g07430	seed	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)	Our results suggest that OsMADS29 has important functions in seed development of rice by regulating cell degeneration of maternal tissues
OsMADS29	Os02g0170300	LOC_Os02g07430	seed	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)
OsMADS29	Os02g0170300	LOC_Os02g07430	reproductive	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa)	Our analyses show that OsMADS29 is expressed in female reproductive organs including the ovule, ovule vasculature, and the whole seed except for the outer layer cells of the pericarp
OsMADS29	Os02g0170300	LOC_Os02g07430	endosperm	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis	However, analyses involving OsMADS29 protein expression domains and characterization of OsMADS29 gain-of-function and knockdown phenotypes revealed novel aspects of its function in maintaining hormone homeostasis, which may have a role in the development of embryo and plastid differentiation and starch filling in endosperm cells
OsMADS29	Os02g0170300	LOC_Os02g07430	starch biosynthesis	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis	Overexpression of OsMADS29 in heterologous BY2 cells was found to mimic the effects of exogenous application of cytokinins that causes differentiation of proplastids to starch-containing amyloplasts and activation of genes involved in the starch biosynthesis pathway
OsMADS29	Os02g0170300	LOC_Os02g07430	homeostasis	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis	However, analyses involving OsMADS29 protein expression domains and characterization of OsMADS29 gain-of-function and knockdown phenotypes revealed novel aspects of its function in maintaining hormone homeostasis, which may have a role in the development of embryo and plastid differentiation and starch filling in endosperm cells
OsMADS29	Os02g0170300	LOC_Os02g07430	starch	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis	However, analyses involving OsMADS29 protein expression domains and characterization of OsMADS29 gain-of-function and knockdown phenotypes revealed novel aspects of its function in maintaining hormone homeostasis, which may have a role in the development of embryo and plastid differentiation and starch filling in endosperm cells
OsMADS29	Os02g0170300	LOC_Os02g07430	starch	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis	Overexpression of OsMADS29 in heterologous BY2 cells was found to mimic the effects of exogenous application of cytokinins that causes differentiation of proplastids to starch-containing amyloplasts and activation of genes involved in the starch biosynthesis pathway
OsMADS29	Os02g0170300	LOC_Os02g07430	grain	Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.	OsMADS29 is a seed-specific MADS-box transcription factor that affects embryo development and grain filling by maintaining hormone homeostasis and degradation of cells in the nucellus and nucellar projection
OsMADS29	Os02g0170300	LOC_Os02g07430	homeostasis	Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.	OsMADS29 is a seed-specific MADS-box transcription factor that affects embryo development and grain filling by maintaining hormone homeostasis and degradation of cells in the nucellus and nucellar projection
OsMADS29	Os02g0170300	LOC_Os02g07430	development	Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.	OsMADS29 is a seed-specific MADS-box transcription factor that affects embryo development and grain filling by maintaining hormone homeostasis and degradation of cells in the nucellus and nucellar projection
OsMADS29	Os02g0170300	LOC_Os02g07430	nucleus	Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.	Although it has a bipartite nuclear localization signal (NLS) sequence, the transiently expressed OsMADS29 monomer does not localize specifically in the nucleus
OsMADS29	Os02g0170300	LOC_Os02g07430	nucleus	Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.	Dimerization of the monomers alters the intracellular localization fate of the resulting OsMADS29 homodimer, which then translocates into the nucleus
OsMADS29	Os02g0170300	LOC_Os02g07430	transcription factor	Characterization of Transcription Regulatory Domains of OsMADS29: Identification of Proximal Auxin-Responsive Domains and a Strong Distal Negative Element.	OsMADS29 (M29) is a seed-specific MADS-box transcription factor involved in programmed cell death of nucellar tissue and maintaining auxin:cytokinin homeostasis
OsMADS29	Os02g0170300	LOC_Os02g07430	cell death	Characterization of Transcription Regulatory Domains of OsMADS29: Identification of Proximal Auxin-Responsive Domains and a Strong Distal Negative Element.	OsMADS29 (M29) is a seed-specific MADS-box transcription factor involved in programmed cell death of nucellar tissue and maintaining auxin:cytokinin homeostasis
OsMADS29	Os02g0170300	LOC_Os02g07430	homeostasis	Characterization of Transcription Regulatory Domains of OsMADS29: Identification of Proximal Auxin-Responsive Domains and a Strong Distal Negative Element.	OsMADS29 (M29) is a seed-specific MADS-box transcription factor involved in programmed cell death of nucellar tissue and maintaining auxin:cytokinin homeostasis
OsMADS29	Os02g0170300	LOC_Os02g07430	programmed cell death	Characterization of Transcription Regulatory Domains of OsMADS29: Identification of Proximal Auxin-Responsive Domains and a Strong Distal Negative Element.	OsMADS29 (M29) is a seed-specific MADS-box transcription factor involved in programmed cell death of nucellar tissue and maintaining auxin:cytokinin homeostasis
OsMADS29	Os02g0170300	LOC_Os02g07430	development	Ca(2+) -Calmodulin Regulates Nuclear Translocation of the Rice Seed-specific MADS-box Transcription Factor OsMADS29.	OsMADS29 (M29) is a crucial regulator of seed development in rice
OsMADS29	Os02g0170300	LOC_Os02g07430	seed	Ca(2+) -Calmodulin Regulates Nuclear Translocation of the Rice Seed-specific MADS-box Transcription Factor OsMADS29.	OsMADS29 (M29) is a crucial regulator of seed development in rice
OsMADS29	Os02g0170300	LOC_Os02g07430	seed development	Ca(2+) -Calmodulin Regulates Nuclear Translocation of the Rice Seed-specific MADS-box Transcription Factor OsMADS29.	OsMADS29 (M29) is a crucial regulator of seed development in rice
OSMADS3	Os01g0201700	LOC_Os01g10504	palea	Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa	A knockout line of OSMADS3, in which the gene is disrupted by T-DNA insertion, shows homeotic transformation of stamens into lodicules and ectopic development of lodicules in the second whorl near the palea where lodicules do not form in the wild type but carpels develop almost normally
OSMADS3	Os01g0201700	LOC_Os01g10504	flower	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	osmads13-3 osmads3-4 displayed a loss of floral meristem determinacy and generated abundant carpelloid structures containing severe defective ovules in the flower center, which were not detectable in the single mutant
OSMADS3	Os01g0201700	LOC_Os01g10504	flower	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Collectively, we propose a model to illustrate the role of OsMADS3, DL, and OsMADS13 in the specification of flower organ identity and meristem determinacy in rice
OSMADS3	Os01g0201700	LOC_Os01g10504	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
OSMADS3	Os01g0201700	LOC_Os01g10504	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	osmads13-3 osmads3-4 displayed a loss of floral meristem determinacy and generated abundant carpelloid structures containing severe defective ovules in the flower center, which were not detectable in the single mutant
OSMADS3	Os01g0201700	LOC_Os01g10504	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	This indicates that OsMADS3 plays a synergistic role with OsMADS13 in both ovule development and floral meristem termination
OSMADS3	Os01g0201700	LOC_Os01g10504	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Strikingly, osmads3-4 dl-sup6 displayed a severe loss of floral meristem determinacy and produced supernumerary whorls of lodicule-like organs at the forth whorl, suggesting that OsMADS3 and DL synergistically terminate the floral meristem
OSMADS3	Os01g0201700	LOC_Os01g10504	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Collectively, we propose a model to illustrate the role of OsMADS3, DL, and OsMADS13 in the specification of flower organ identity and meristem determinacy in rice
OSMADS3	Os01g0201700	LOC_Os01g10504	meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy
OSMADS3	Os01g0201700	LOC_Os01g10504	stamen	Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa	A knockout line of OSMADS3, in which the gene is disrupted by T-DNA insertion, shows homeotic transformation of stamens into lodicules and ectopic development of lodicules in the second whorl near the palea where lodicules do not form in the wild type but carpels develop almost normally
OSMADS3	Os01g0201700	LOC_Os01g10504	leaf	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
OSMADS3	Os01g0201700	LOC_Os01g10504	leaf	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy
OSMADS3	Os01g0201700	LOC_Os01g10504	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
OSMADS3	Os01g0201700	LOC_Os01g10504	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	osmads13-3 osmads3-4 displayed a loss of floral meristem determinacy and generated abundant carpelloid structures containing severe defective ovules in the flower center, which were not detectable in the single mutant
OSMADS3	Os01g0201700	LOC_Os01g10504	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	This indicates that OsMADS3 plays a synergistic role with OsMADS13 in both ovule development and floral meristem termination
OSMADS3	Os01g0201700	LOC_Os01g10504	floral meristem	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Strikingly, osmads3-4 dl-sup6 displayed a severe loss of floral meristem determinacy and produced supernumerary whorls of lodicule-like organs at the forth whorl, suggesting that OsMADS3 and DL synergistically terminate the floral meristem
OSMADS3	Os01g0201700	LOC_Os01g10504	stamen	Ectopic Expression of OsMADS3, a Rice Ortholog of AGAMOUS, Caused a Homeotic Transformation of Lodicules to Stamens in Transgenic Rice Plants	As a consequence of the ectopic expression of the OsMADS3, lodicules were homeotically transformed into stamens
OSMADS3	Os01g0201700	LOC_Os01g10504	stamen	Ectopic Expression of OsMADS3, a Rice Ortholog of AGAMOUS, Caused a Homeotic Transformation of Lodicules to Stamens in Transgenic Rice Plants	Ectopic Expression of OsMADS3, a Rice Ortholog of AGAMOUS, Caused a Homeotic Transformation of Lodicules to Stamens in Transgenic Rice Plants
OSMADS3	Os01g0201700	LOC_Os01g10504	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Here, we report the interactions of rice (Oryza sativa) floral homeotic genes, OsMADS3 (a C-class gene), OsMADS13 (a D-class gene), and DROOPING LEAF (DL), in specifying floral organ identities and floral meristem determinacy
OSMADS3	Os01g0201700	LOC_Os01g10504	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	osmads13-3 osmads3-4 displayed a loss of floral meristem determinacy and generated abundant carpelloid structures containing severe defective ovules in the flower center, which were not detectable in the single mutant
OSMADS3	Os01g0201700	LOC_Os01g10504	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	This indicates that OsMADS3 plays a synergistic role with OsMADS13 in both ovule development and floral meristem termination
OSMADS3	Os01g0201700	LOC_Os01g10504	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Strikingly, osmads3-4 dl-sup6 displayed a severe loss of floral meristem determinacy and produced supernumerary whorls of lodicule-like organs at the forth whorl, suggesting that OsMADS3 and DL synergistically terminate the floral meristem
OSMADS3	Os01g0201700	LOC_Os01g10504	floral	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy
OSMADS3	Os01g0201700	LOC_Os01g10504	floral	Ectopic Expression of OsMADS3, a Rice Ortholog of AGAMOUS, Caused a Homeotic Transformation of Lodicules to Stamens in Transgenic Rice Plants	In order to clarify the evolutionary relationship of floral organs between grasses and dicots, we expressed OsMADS3, a rice (Oryza sativa L
OSMADS3	Os01g0201700	LOC_Os01g10504	sterility	Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa).	Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa).
OSMADS3	Os01g0201700	LOC_Os01g10504	male sterility	Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa).	Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa).
OSMADS3	Os01g0201700	LOC_Os01g10504	flower	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.
OSMADS3	Os01g0201700	LOC_Os01g10504	flower	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Disruption of OsMADS3 in the fon2 mutant by CRISPR-Cas9 technology caused a flower phenotype similar to that of 2B-424, confirming that the gene responsible for enhancement of fon2 was OsMADS3
OSMADS3	Os01g0201700	LOC_Os01g10504	flower	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	These findings suggest that OsMADS3 is involved not only in FM determinacy in late flower development but also in FM activity in early flower development
OSMADS3	Os01g0201700	LOC_Os01g10504	development	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Morphological analysis showed that the fon2 and osmads3 mutations synergistically affected pistil development and FM determinacy
OSMADS3	Os01g0201700	LOC_Os01g10504	development	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	These findings suggest that OsMADS3 is involved not only in FM determinacy in late flower development but also in FM activity in early flower development
OSMADS3	Os01g0201700	LOC_Os01g10504	floral	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.
OSMADS3	Os01g0201700	LOC_Os01g10504	meristem	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.
OSMADS3	Os01g0201700	LOC_Os01g10504	floral organ	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.
OSMADS3	Os01g0201700	LOC_Os01g10504	flower development	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	These findings suggest that OsMADS3 is involved not only in FM determinacy in late flower development but also in FM activity in early flower development
OSMADS3	Os01g0201700	LOC_Os01g10504	floral organ number	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Cooperatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.
OSMADS3	Os01g0201700	LOC_Os01g10504	development	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OSMADS3	Os01g0201700	LOC_Os01g10504	floral	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OSMADS3	Os01g0201700	LOC_Os01g10504	meristem	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OSMADS3	Os01g0201700	LOC_Os01g10504	floral meristem	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OSMADS3	Os01g0201700	LOC_Os01g10504	ovule	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OsMADS30	Os06g0667200	LOC_Os06g45650	seed	Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).	sativa plants carrying a T-DNA insertion in the OsMADS30 gene do not show aberrant seed phenotypes, indicating that OsMADS30 likely does not have a canonical &quot;Bsister function&quot;
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	panicle	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene	Using laser microdissection and microarrays, we found that expression of PANICLE PHYTOMER2 (PAP2) and three APETALA1 (AP1)/FRUITFULL (FUL)-like genes (MADS14, MADS15, and MADS18) is induced in the SAM during meristem phase transition in rice (Oryza sativa)
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet number	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	In addition, osmads34 mutants displayed a decreased spikelet number and altered spikelet morphology, with lemma/leaf-like elongated sterile lemmas
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	root	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	We demonstrate the ubiquitous expression of OsMADS34 in roots, leaves, and primordia of inflorescence and spikelet organs
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	leaf	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	In addition, osmads34 mutants displayed a decreased spikelet number and altered spikelet morphology, with lemma/leaf-like elongated sterile lemmas
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	floral	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Moreover, analysis of the double mutant osmads34 osmads1 suggests that OsMADS34 specifies the identities of floral organs, including the lemma/palea, lodicules, stamens, and carpel, in combination with another rice SEP-like gene, OsMADS1
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	flower	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene	Furthermore, the precocious flowering phenotype caused by the overexpression of Hd3a, a rice florigen gene, was weakened in pap2-1 mutants
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	panicle	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	In the panicle of the panicle phytomer2-1 (pap2-1) mutant, the pattern of meristem initiation is disorganized and newly formed meristems show reduced competency to become spikelet meristems, resulting in the transformation of early arising spikelets into rachis branches
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	panicle	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	sterile	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	In addition, osmads34 mutants displayed a decreased spikelet number and altered spikelet morphology, with lemma/leaf-like elongated sterile lemmas
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Here, we report the biological role of one SEPALLATA (SEP)-like gene, OsMADS34, in controlling the development of inflorescences and spikelets in rice (Oryza sativa)
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	We demonstrate the ubiquitous expression of OsMADS34 in roots, leaves, and primordia of inflorescence and spikelet organs
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Compared with the wild type, osmads34 mutants developed altered inflorescence morphology, with an increased number of primary branches and a decreased number of secondary branches
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Collectively, our study suggests that the origin and diversification of OsMADS34 and OsMADS1 contribute to the origin of distinct grass inflorescences and spikelets
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	lemma	The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas	Our findings support the hypothesis that OUIs originated from the lemmas of degenerate florets under the negative control of OsMADS34
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	lemma	The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas	The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas	The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Here, we report the biological role of one SEPALLATA (SEP)-like gene, OsMADS34, in controlling the development of inflorescences and spikelets in rice (Oryza sativa)
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	We demonstrate the ubiquitous expression of OsMADS34 in roots, leaves, and primordia of inflorescence and spikelet organs
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	In addition, osmads34 mutants displayed a decreased spikelet number and altered spikelet morphology, with lemma/leaf-like elongated sterile lemmas
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Collectively, our study suggests that the origin and diversification of OsMADS34 and OsMADS1 contribute to the origin of distinct grass inflorescences and spikelets
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	In the panicle of the panicle phytomer2-1 (pap2-1) mutant, the pattern of meristem initiation is disorganized and newly formed meristems show reduced competency to become spikelet meristems, resulting in the transformation of early arising spikelets into rachis branches
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	We propose that PAP2 is a positive regulator of spikelet meristem identity
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	PAP2 expression starts the earliest among the five SEP genes, and a low but significant level of PAP2 mRNA was detected in the inflorescence meristem, in branch meristems immediately after the transition, and in glume primordia, consistent with its role in the early development of spikelet formation
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet meristem	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	In the panicle of the panicle phytomer2-1 (pap2-1) mutant, the pattern of meristem initiation is disorganized and newly formed meristems show reduced competency to become spikelet meristems, resulting in the transformation of early arising spikelets into rachis branches
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet meristem	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	We propose that PAP2 is a positive regulator of spikelet meristem identity
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet meristem	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	lemma	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	In addition, osmads34 mutants displayed a decreased spikelet number and altered spikelet morphology, with lemma/leaf-like elongated sterile lemmas
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	lemma	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Moreover, analysis of the double mutant osmads34 osmads1 suggests that OsMADS34 specifies the identities of floral organs, including the lemma/palea, lodicules, stamens, and carpel, in combination with another rice SEP-like gene, OsMADS1
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	seed	The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas	Here we present a novel mutant of the rice SEPALLATA-like gene OsMADS34 which develops, in addition to disorganized branches and sterile seeds, elongated OUIs
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	palea	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Moreover, analysis of the double mutant osmads34 osmads1 suggests that OsMADS34 specifies the identities of floral organs, including the lemma/palea, lodicules, stamens, and carpel, in combination with another rice SEP-like gene, OsMADS1
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	sterile	The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas	Here we present a novel mutant of the rice SEPALLATA-like gene OsMADS34 which develops, in addition to disorganized branches and sterile seeds, elongated OUIs
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	PAP2 expression starts the earliest among the five SEP genes, and a low but significant level of PAP2 mRNA was detected in the inflorescence meristem, in branch meristems immediately after the transition, and in glume primordia, consistent with its role in the early development of spikelet formation
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	stamen	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development	Moreover, analysis of the double mutant osmads34 osmads1 suggests that OsMADS34 specifies the identities of floral organs, including the lemma/palea, lodicules, stamens, and carpel, in combination with another rice SEP-like gene, OsMADS1
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	In the panicle of the panicle phytomer2-1 (pap2-1) mutant, the pattern of meristem initiation is disorganized and newly formed meristems show reduced competency to become spikelet meristems, resulting in the transformation of early arising spikelets into rachis branches
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	We propose that PAP2 is a positive regulator of spikelet meristem identity
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	PAP2 expression starts the earliest among the five SEP genes, and a low but significant level of PAP2 mRNA was detected in the inflorescence meristem, in branch meristems immediately after the transition, and in glume primordia, consistent with its role in the early development of spikelet formation
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene	Using laser microdissection and microarrays, we found that expression of PANICLE PHYTOMER2 (PAP2) and three APETALA1 (AP1)/FRUITFULL (FUL)-like genes (MADS14, MADS15, and MADS18) is induced in the SAM during meristem phase transition in rice (Oryza sativa)
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene	Further depletion of PAP2 function from these triple knockdown plants inhibited the transition of the meristem to the IM
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene	Based on these results, we propose that PAP2 and the three AP1/FUL-like genes coordinately act in the meristem to specify the identity of the IM downstream of the florigen signal
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene	Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	grain	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	grain	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	In this study, we used m34-z, a new mutant allele of the rice (Oryza sativa) E-class gene OsMADS34, to examine OsMADS34 function in determining the identities of glumes (rudimentary glume and sterile lemma) and grain size
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	grain	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	Interesting, transcriptional activity analysis revealed that OsMADS34 protein was a transcription repressor and it may influence grain yield by suppressing the expressions of BG1, GW8, GW2, and GL7 in the m34-z mutant
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	grain	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	These findings revealed that OsMADS34 largely affects grain yield by affecting the size of grains from the secondary branches
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	development	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	In the m34-z mutant, both the rudimentary glume and sterile lemma were homeotically converted to the lemma-like organ and acquired the lemma identity, suggesting that OsMADS34 plays important roles in the development of glumes
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	grain yield	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	grain yield	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	Interesting, transcriptional activity analysis revealed that OsMADS34 protein was a transcription repressor and it may influence grain yield by suppressing the expressions of BG1, GW8, GW2, and GL7 in the m34-z mutant
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	grain yield	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	These findings revealed that OsMADS34 largely affects grain yield by affecting the size of grains from the secondary branches
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	yield	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	Interesting, transcriptional activity analysis revealed that OsMADS34 protein was a transcription repressor and it may influence grain yield by suppressing the expressions of BG1, GW8, GW2, and GL7 in the m34-z mutant
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	yield	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	These findings revealed that OsMADS34 largely affects grain yield by affecting the size of grains from the secondary branches
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	grain size	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	In this study, we used m34-z, a new mutant allele of the rice (Oryza sativa) E-class gene OsMADS34, to examine OsMADS34 function in determining the identities of glumes (rudimentary glume and sterile lemma) and grain size
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	lemma	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	In the m34-z mutant, both the rudimentary glume and sterile lemma were homeotically converted to the lemma-like organ and acquired the lemma identity, suggesting that OsMADS34 plays important roles in the development of glumes
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	sterile	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	In this study, we used m34-z, a new mutant allele of the rice (Oryza sativa) E-class gene OsMADS34, to examine OsMADS34 function in determining the identities of glumes (rudimentary glume and sterile lemma) and grain size
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	sterile	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	In the m34-z mutant, both the rudimentary glume and sterile lemma were homeotically converted to the lemma-like organ and acquired the lemma identity, suggesting that OsMADS34 plays important roles in the development of glumes
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	quality	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice.
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Collectively, these findings provide insights into the regulatory function of OsMADS34 in rice inflorescence and spikelet development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	development	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 longer and wider sterile lemmas that were converted into lemma/palea like organs, suggesting that ELE and OsMADS34 synergistically control the sterile lemma development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	development	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 OsMADS34 may act together OsMADS15 in controlling sterile lemma development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	development	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Collectively, these findings provide insights into the regulatory function of OsMADS34 in rice inflorescence and spikelet development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	floral	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Genetic analysis revealed that OsMADS34 controls different aspects of inflorescence structure, branching and meristem activity synergistically with LAX PANICLE1 (LAX1) and FLORAL ORGAN NUMBER4 (FON4), as evidenced by the enhanced phenotypes of osmads34 lax1 and osmads34 fon4 compared with the single mutants
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Genetic analysis revealed that OsMADS34 controls different aspects of inflorescence structure, branching and meristem activity synergistically with LAX PANICLE1 (LAX1) and FLORAL ORGAN NUMBER4 (FON4), as evidenced by the enhanced phenotypes of osmads34 lax1 and osmads34 fon4 compared with the single mutants
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Microarray analysis showed that, at the very early stages of inflorescence formation, dysfunction of OsMADS34 caused altered expression of 379 genes that are associated with protein modification and degradation, transcriptional regulation, signaling and metabolism activity
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Genetic analysis revealed that OsMADS34 controls different aspects of inflorescence structure, branching and meristem activity synergistically with LAX PANICLE1 (LAX1) and FLORAL ORGAN NUMBER4 (FON4), as evidenced by the enhanced phenotypes of osmads34 lax1 and osmads34 fon4 compared with the single mutants
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Collectively, these findings provide insights into the regulatory function of OsMADS34 in rice inflorescence and spikelet development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	lemma	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Additionally, double mutant between osmads34 and the sterile lemma defective mutant elongated empty glume (ele) displayed an enhanced phenotype, i
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	lemma	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 longer and wider sterile lemmas that were converted into lemma/palea like organs, suggesting that ELE and OsMADS34 synergistically control the sterile lemma development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	lemma	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 OsMADS34 may act together OsMADS15 in controlling sterile lemma development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	branching	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Genetic analysis revealed that OsMADS34 controls different aspects of inflorescence structure, branching and meristem activity synergistically with LAX PANICLE1 (LAX1) and FLORAL ORGAN NUMBER4 (FON4), as evidenced by the enhanced phenotypes of osmads34 lax1 and osmads34 fon4 compared with the single mutants
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	sterile	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Additionally, double mutant between osmads34 and the sterile lemma defective mutant elongated empty glume (ele) displayed an enhanced phenotype, i
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	sterile	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 longer and wider sterile lemmas that were converted into lemma/palea like organs, suggesting that ELE and OsMADS34 synergistically control the sterile lemma development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	sterile	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 OsMADS34 may act together OsMADS15 in controlling sterile lemma development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	floral organ	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Genetic analysis revealed that OsMADS34 controls different aspects of inflorescence structure, branching and meristem activity synergistically with LAX PANICLE1 (LAX1) and FLORAL ORGAN NUMBER4 (FON4), as evidenced by the enhanced phenotypes of osmads34 lax1 and osmads34 fon4 compared with the single mutants
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet development	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Collectively, these findings provide insights into the regulatory function of OsMADS34 in rice inflorescence and spikelet development
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	floral organ number	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	 Genetic analysis revealed that OsMADS34 controls different aspects of inflorescence structure, branching and meristem activity synergistically with LAX PANICLE1 (LAX1) and FLORAL ORGAN NUMBER4 (FON4), as evidenced by the enhanced phenotypes of osmads34 lax1 and osmads34 fon4 compared with the single mutants
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	panicle	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 We have generated loss-of-function and overexpression mutants of the paralogous OsMADS5 and OsMADS34 genes in rice (Oryza sativa), and analysed their panicle phenotypes
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	panicle	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 The osmads5 osmads34 mutant lines had significantly enhanced panicle branching with increased secondary, and even tertiary and quaternary, branches, compared to wild-type (WT) and osmads34 plants
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	panicle	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	meristem	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	spikelet meristem	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	inflorescence	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	branching	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	branching	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 The osmads5 osmads34 mutant lines had significantly enhanced panicle branching with increased secondary, and even tertiary and quaternary, branches, compared to wild-type (WT) and osmads34 plants
OsMADS34|PAP2	Os03g0753100	LOC_Os03g54170	branching	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS4	Os05g0423400	LOC_Os05g34940	stamen	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	The global architecture of transcripts regulated by OsMADS2 gives insights into the regulation of cell division and vascular differentiation that together can form this highly modified grass organ with important functions in floret opening and stamen emergence independent of the paralogous gene OsMADS4
OsMADS4	Os05g0423400	LOC_Os05g34940	cell division	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	The global architecture of transcripts regulated by OsMADS2 gives insights into the regulation of cell division and vascular differentiation that together can form this highly modified grass organ with important functions in floret opening and stamen emergence independent of the paralogous gene OsMADS4
OsMADS4	Os05g0423400	LOC_Os05g34940	flower	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Our results demonstrate that OsMADS16 is an AP3/DEF orthologue to specify the identities of lodicules and stamens in rice flower and also support that OsMADS4 is a PI orthologue
OsMADS4	Os05g0423400	LOC_Os05g34940	stamen	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Our results demonstrate that OsMADS16 is an AP3/DEF orthologue to specify the identities of lodicules and stamens in rice flower and also support that OsMADS4 is a PI orthologue
OsMADS4	Os05g0423400	LOC_Os05g34940	pi	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Transcription of a rice PI homologous gene, OsMADS4, was also reduced remarkably in the transgenic plants
OsMADS4	Os05g0423400	LOC_Os05g34940	pi	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference	Our results demonstrate that OsMADS16 is an AP3/DEF orthologue to specify the identities of lodicules and stamens in rice flower and also support that OsMADS4 is a PI orthologue
OsMADS4	Os05g0423400	LOC_Os05g34940	floral	Dwarf and deformed flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)	Consistent with the mutant floral phenotype, DDF1 positively regulates B-class genes OsMADS4 and OsMADS16, and negatively regulates pistil specification gene DL
OsMADS4	Os05g0423400	LOC_Os05g34940	stamen	Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development	Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development
OsMADS4	Os05g0423400	LOC_Os05g34940	architecture	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ	The global architecture of transcripts regulated by OsMADS2 gives insights into the regulation of cell division and vascular differentiation that together can form this highly modified grass organ with important functions in floret opening and stamen emergence independent of the paralogous gene OsMADS4
OsMADS4	Os05g0423400	LOC_Os05g34940	stamen	Double-stranded RNA interference of a rice PI/GLO paralog, OsMADS2, uncovers its second-whorl-specific function in floral organ patterning	Our data demonstrate its essential role in lodicule development and implicate the second PI/GLO paralog, OsMADS4, to suffice for stamen specification
OsMADS5	Os06g0162800	LOC_Os06g06750	leaf	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsMADS5	Os06g0162800	LOC_Os06g06750	floral	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsMADS5	Os06g0162800	LOC_Os06g06750	lemma	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsMADS5	Os06g0162800	LOC_Os06g06750	vegetative	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene	In case of the loss-of-function mutation of OsMADS5, no defect in either panicles or vegetative organs was observed
OsMADS5	Os06g0162800	LOC_Os06g06750	panicle	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene	In case of the loss-of-function mutation of OsMADS5, no defect in either panicles or vegetative organs was observed
OsMADS5	Os06g0162800	LOC_Os06g06750	spikelet	Loss of LOFSEP transcription factor function converts Spikelet to Leaf-like Structures in Rice.	 Genetic and molecular analyses demonstrated that OsMADS1, OsMADS5 and OsMADS34 together regulate floral meristem determinacy, and specify the identities of spikelet organs by positively regulating the other MADS-box floral homeotic genes
OsMADS5	Os06g0162800	LOC_Os06g06750	floral	Loss of LOFSEP transcription factor function converts Spikelet to Leaf-like Structures in Rice.	 Genetic and molecular analyses demonstrated that OsMADS1, OsMADS5 and OsMADS34 together regulate floral meristem determinacy, and specify the identities of spikelet organs by positively regulating the other MADS-box floral homeotic genes
OsMADS5	Os06g0162800	LOC_Os06g06750	floral	Loss of LOFSEP transcription factor function converts Spikelet to Leaf-like Structures in Rice.	 Experiments conducted in yeast also suggested that OsMADS1, OsMADS5 and OsMADS34 form protein-protein interactions with other MADS-box floral homeotic members, which seems to be a typical, conserved feature of plant SEP proteins
OsMADS5	Os06g0162800	LOC_Os06g06750	meristem	Loss of LOFSEP transcription factor function converts Spikelet to Leaf-like Structures in Rice.	 Genetic and molecular analyses demonstrated that OsMADS1, OsMADS5 and OsMADS34 together regulate floral meristem determinacy, and specify the identities of spikelet organs by positively regulating the other MADS-box floral homeotic genes
OsMADS5	Os06g0162800	LOC_Os06g06750	reproductive	Loss of LOFSEP transcription factor function converts Spikelet to Leaf-like Structures in Rice.	 OsMADS5 was expressed strongly across a broad range of reproductive stages and tissues
OsMADS5	Os06g0162800	LOC_Os06g06750	floral meristem	Loss of LOFSEP transcription factor function converts Spikelet to Leaf-like Structures in Rice.	 Genetic and molecular analyses demonstrated that OsMADS1, OsMADS5 and OsMADS34 together regulate floral meristem determinacy, and specify the identities of spikelet organs by positively regulating the other MADS-box floral homeotic genes
OsMADS5	Os06g0162800	LOC_Os06g06750	floral meristem determinacy	Loss of LOFSEP transcription factor function converts Spikelet to Leaf-like Structures in Rice.	 Genetic and molecular analyses demonstrated that OsMADS1, OsMADS5 and OsMADS34 together regulate floral meristem determinacy, and specify the identities of spikelet organs by positively regulating the other MADS-box floral homeotic genes
OsMADS5	Os06g0162800	LOC_Os06g06750	spikelet	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS5	Os06g0162800	LOC_Os06g06750	panicle	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 We have generated loss-of-function and overexpression mutants of the paralogous OsMADS5 and OsMADS34 genes in rice (Oryza sativa), and analysed their panicle phenotypes
OsMADS5	Os06g0162800	LOC_Os06g06750	panicle	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 The osmads5 osmads34 mutant lines had significantly enhanced panicle branching with increased secondary, and even tertiary and quaternary, branches, compared to wild-type (WT) and osmads34 plants
OsMADS5	Os06g0162800	LOC_Os06g06750	panicle	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS5	Os06g0162800	LOC_Os06g06750	meristem	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS5	Os06g0162800	LOC_Os06g06750	spikelet meristem	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS5	Os06g0162800	LOC_Os06g06750	inflorescence	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.
OsMADS5	Os06g0162800	LOC_Os06g06750	branching	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.
OsMADS5	Os06g0162800	LOC_Os06g06750	branching	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 The osmads5 osmads34 mutant lines had significantly enhanced panicle branching with increased secondary, and even tertiary and quaternary, branches, compared to wild-type (WT) and osmads34 plants
OsMADS5	Os06g0162800	LOC_Os06g06750	branching	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	 Our results reveal a role for OsMADS5 in panicle development, and show that OsMADS5 and OsMADS34 play similar functions in limiting branching and promoting the transition to spikelet meristem identity, in part by repressing RCN4 expression
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	heading date	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	RT-PCR analyses of the OsMADS50 KO and ubiquitin (ubi):OsMADS50 plants showed that OsMADS50 is an upstream regulator of OsMADS1, OsMADS14, OsMADS15, OsMADS18, and Hd (Heading date)3a, but works either parallel with or downstream of Hd1 and O
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	floral	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	These results suggest that OsMADS50 is an important flowering activator that controls various floral regulators in rice
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice	We previously reported that OsMADS50, which is highly homologous to Arabidopsis SOC1, functions as a positive regulator for flowering
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice	Knock-out of OsMADS50 caused a late-flowering phenotype only under LD conditions
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice	These observations imply that OsMADS50 and OsMADS56 function antagonistically through OsLFL1-Ehd1 in regulating LD-dependent flowering
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flowering time	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	In these transgenics, the expression levels of known flowering time genes reveal RFL as a regulator of OsSOC1 (OsMADS50), an activator of flowering
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	floral	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice	OsSOC1 is expressed in vegetative tissues, and expression is elevated at the time of floral initiation, 40-50 days after sowing, and remains uniformly high thereafter, similar to the expression pattern of AtSOC1
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	heading date	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	Among them, the OsMADS50 and Heading date1 pathways were not affected by the mutation
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	heading date	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	By analyzing a large F2 population from NIL x DJY1, the locus DTH3 (QTL for days to heading on chromosome 3) controlling early heading date in DJY1 was fine mapped to a 64-kb segment which contained only one annotated gene, a MIKC-type MADS-box protein
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	heading date	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	The Early heading date 1 (Ehd1) which promotes the RFT1, was up-regulated by DTH3 in both LD and SD conditions
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	heading date	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice	In a screen for MADS box genes which activate and/or repress flowering in rice, we identified a gene encoding a MADS domain protein (OsSOC1) related to the Arabidopsis gene AtSOC1
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice	The constitutive expression of OsSOC1 in Arabidopsis results in early flowering, suggesting that the rice gene is a functional equivalent of AtSOC1
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice	We were not able to identify FLC-like sequences in the rice genome; however, we show that ectopic expression of the Arabidopsis FLC delays flowering in rice, and the up-regulation of OsSOC1 at the onset of flowering initiation is delayed in the AtFLC transgenic lines
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	Furthermore, mutants in OsMADS50, a rice ortholog of Arabidopsis SUPPRESOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1) did not flower up to 300 days after sowing under LD conditions, indicating that OsMADS50, which acts upstream of RFT1, promotes flowering under LD conditions
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	We propose that both positive (OsMADS50 and Ehd1) and negative (Hd1, phyB and Ghd7) regulators of RFT1 form a gene network that regulates LD flowering in rice
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	heading date	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	The expression of Hd3a and FTL decreased in these transgenic plants, whereas the expression of Hd1, Early heading date 1 (Ehd1), OsMADS51, and OsMADS50 did not significantly change
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	heading date	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice	OsSOC1 is located on top of the short arm of chromosome 3, tightly linked to the heading date locus, Hd9
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	In these transgenics, the expression levels of known flowering time genes reveal RFL as a regulator of OsSOC1 (OsMADS50), an activator of flowering
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	We detected a 6-bp deletion and a single base substitution in the C-domain by sequencing DTH3 in DJY1 compared with dth3 in NIL, and overexpression of DTH3 caused early flowering in callus
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	DTH3 affected flowering time and had no significant effect on the main agronomic traits
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flowering time	Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1	DTH3 affected flowering time and had no significant effect on the main agronomic traits
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flowering time	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	While overexpression of OsMADS50 caused extremely early flowering at the callus stage, OsMADS50 RNAi plants exhibited phenotypes of late flowering and an increase in the number of elongated internodes
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	These results suggest that OsMADS50 is an important flowering activator that controls various floral regulators in rice
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flower	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	vegetative	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice	OsSOC1 is expressed in vegetative tissues, and expression is elevated at the time of floral initiation, 40-50 days after sowing, and remains uniformly high thereafter, similar to the expression pattern of AtSOC1
OsMADS50|OsSOC1|DTH3	Os03g0122600	LOC_Os03g03070|LOC_Os03g03100	flowering time	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice
OsMADS51|OsMADS65	Os01g0922800	LOC_Os01g69850	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	In SDs OsMADS51 null mutants flowered 2 weeks later than normal, whereas in long days loss of OsMADS51 had little effect on flowering
OsMADS51|OsMADS65	Os01g0922800	LOC_Os01g69850	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	Ectopic expression of OsMADS51 caused flowering to occur about 7 d earlier only in SDs
OsMADS51|OsMADS65	Os01g0922800	LOC_Os01g69850	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	These results indicate that OsMADS51 is a flowering promoter, particularly in SDs, and that this gene functions upstream of Ehd1, OsMADS14, and Hd3a
OsMADS51|OsMADS65	Os01g0922800	LOC_Os01g69850	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	In summary, OsMADS51 is a novel flowering promoter that transmits a SD promotion signal from OsGI to Ehd1
OsMADS51|OsMADS65	Os01g0922800	LOC_Os01g69850	flower	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a
OsMADS51|OsMADS65	Os01g0922800	LOC_Os01g69850	heading date	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice	The expression of Hd3a and FTL decreased in these transgenic plants, whereas the expression of Hd1, Early heading date 1 (Ehd1), OsMADS51, and OsMADS50 did not significantly change
OsMADS51|OsMADS65	Os01g0922800	LOC_Os01g69850	flower	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod	In rice, the expression of Ehd1 is also controlled by the photoperiodic flowering genes OsGI (a rice ortholog of GI) and OsMADS51
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	flower	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice	Overexpression of OsMADS56 (56OX) also resulted in delayed flowering under LD
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	flower	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice	These observations imply that OsMADS50 and OsMADS56 function antagonistically through OsLFL1-Ehd1 in regulating LD-dependent flowering
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	flower	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	transcription factor	Control of Thousand-Grain Weight by OsMADS56 in Rice.	8, OsMADS56 encoding a MADS-box transcription factor, was performed in this study
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain	Control of Thousand-Grain Weight by OsMADS56 in Rice.	 In these populations, decreased grain weight and size were associated with a reduction in the expression of OsMADS56
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain	Control of Thousand-Grain Weight by OsMADS56 in Rice.	 In transgenic populations of OsMADS56 driven by a strong constitutive promoter, grain weight and size of the positive plants were significantly higher than those of the negative plants
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain	Control of Thousand-Grain Weight by OsMADS56 in Rice.	 Cloning of OsMADS56 provides a new gene resource to improve grain weight and size through molecular design breeding
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	breeding	Control of Thousand-Grain Weight by OsMADS56 in Rice.	 Cloning of OsMADS56 provides a new gene resource to improve grain weight and size through molecular design breeding
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain weight	Control of Thousand-Grain Weight by OsMADS56 in Rice.	Control of Thousand-Grain Weight by OsMADS56 in Rice.
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain weight	Control of Thousand-Grain Weight by OsMADS56 in Rice.	 In these populations, decreased grain weight and size were associated with a reduction in the expression of OsMADS56
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain weight	Control of Thousand-Grain Weight by OsMADS56 in Rice.	 In transgenic populations of OsMADS56 driven by a strong constitutive promoter, grain weight and size of the positive plants were significantly higher than those of the negative plants
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain weight	Control of Thousand-Grain Weight by OsMADS56 in Rice.	 Cloning of OsMADS56 provides a new gene resource to improve grain weight and size through molecular design breeding
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	growth	Natural variations in grain length 10 (GL10) regulate rice grain size.	 GL10 regulates grain length by promoting greater longitudinal cell growth in the grain glume
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain	Natural variations in grain length 10 (GL10) regulate rice grain size.	0-kb deletion in the first exon that abolishes its transcription, results in shorter grain length, lower grain weight and delayed flowering in gl10 plants
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain	Natural variations in grain length 10 (GL10) regulate rice grain size.	 The knockout of GL10 in the HJX74 background leads to grain phenotypes similar to that of NIL-gl10, while overexpression of GL10 results in increased grain length and weight and earlier heading date
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain	Natural variations in grain length 10 (GL10) regulate rice grain size.	 GL10 regulates grain length by promoting greater longitudinal cell growth in the grain glume
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain	Natural variations in grain length 10 (GL10) regulate rice grain size.	 Our findings reveal an allelic variation of GL10 that may explain differences in grain length among modern cultivars and could be used to breed rice varieties with optimized grain shape
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain length	Natural variations in grain length 10 (GL10) regulate rice grain size.	0-kb deletion in the first exon that abolishes its transcription, results in shorter grain length, lower grain weight and delayed flowering in gl10 plants
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain length	Natural variations in grain length 10 (GL10) regulate rice grain size.	 The knockout of GL10 in the HJX74 background leads to grain phenotypes similar to that of NIL-gl10, while overexpression of GL10 results in increased grain length and weight and earlier heading date
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain length	Natural variations in grain length 10 (GL10) regulate rice grain size.	 GL10 regulates grain length by promoting greater longitudinal cell growth in the grain glume
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain length	Natural variations in grain length 10 (GL10) regulate rice grain size.	 Our findings reveal an allelic variation of GL10 that may explain differences in grain length among modern cultivars and could be used to breed rice varieties with optimized grain shape
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	panicle	Natural variations in grain length 10 (GL10) regulate rice grain size.	 Additionally, GL10 participates in the regulation of gibberellic acid (GA) signaling pathway genes in young panicle tissues
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	heading date	Natural variations in grain length 10 (GL10) regulate rice grain size.	 The knockout of GL10 in the HJX74 background leads to grain phenotypes similar to that of NIL-gl10, while overexpression of GL10 results in increased grain length and weight and earlier heading date
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	signaling pathway gene	Natural variations in grain length 10 (GL10) regulate rice grain size.	 Additionally, GL10 participates in the regulation of gibberellic acid (GA) signaling pathway genes in young panicle tissues
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain weight	Natural variations in grain length 10 (GL10) regulate rice grain size.	0-kb deletion in the first exon that abolishes its transcription, results in shorter grain length, lower grain weight and delayed flowering in gl10 plants
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	flowering	Natural variations in grain length 10 (GL10) regulate rice grain size.	0-kb deletion in the first exon that abolishes its transcription, results in shorter grain length, lower grain weight and delayed flowering in gl10 plants
OsMADS56|GL10	Os10g0536100	LOC_Os10g39130	grain shape	Natural variations in grain length 10 (GL10) regulate rice grain size.	 Our findings reveal an allelic variation of GL10 that may explain differences in grain length among modern cultivars and could be used to breed rice varieties with optimized grain shape
OsMADS57	Os02g0731200	LOC_Os02g49840	tiller	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	An activation-tagged mutant osmads57-1 and OsMADS57-overexpression lines showed increased tillers, whereas OsMADS57 antisense lines had fewer tillers
OsMADS57	Os02g0731200	LOC_Os02g49840	tiller	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	OsMIR444a-overexpressing lines exhibited suppressed OsMADS57 expression and tillering
OsMADS57	Os02g0731200	LOC_Os02g49840	tiller	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Furthermore, osmads57-1 was insensitive to strigolactone treatment to inhibit axillary bud outgrowth, and OsMADS57's function in tillering was dependent on D14
OsMADS57	Os02g0731200	LOC_Os02g49840	tiller	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Therefore, OsMIR444a-regulated OsMADS57, together with OsTB1, target D14 to control tillering
OsMADS57	Os02g0731200	LOC_Os02g49840	tiller	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14
OsMADS57	Os02g0731200	LOC_Os02g49840	growth	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Here we report that OsMADS57 interacts with OsTB1 (TEOSINTE BRANCHED1) and targets D14 (Dwarf14) to control the outgrowth of axillary buds in rice
OsMADS57	Os02g0731200	LOC_Os02g49840	growth	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Furthermore, osmads57-1 was insensitive to strigolactone treatment to inhibit axillary bud outgrowth, and OsMADS57's function in tillering was dependent on D14
OsMADS57	Os02g0731200	LOC_Os02g49840	strigolactone	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Furthermore, osmads57-1 was insensitive to strigolactone treatment to inhibit axillary bud outgrowth, and OsMADS57's function in tillering was dependent on D14
OsMADS57	Os02g0731200	LOC_Os02g49840	tillering	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	OsMIR444a-overexpressing lines exhibited suppressed OsMADS57 expression and tillering
OsMADS57	Os02g0731200	LOC_Os02g49840	tillering	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Furthermore, osmads57-1 was insensitive to strigolactone treatment to inhibit axillary bud outgrowth, and OsMADS57's function in tillering was dependent on D14
OsMADS57	Os02g0731200	LOC_Os02g49840	tillering	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Therefore, OsMIR444a-regulated OsMADS57, together with OsTB1, target D14 to control tillering
OsMADS57	Os02g0731200	LOC_Os02g49840	tillering	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14
OsMADS57	Os02g0731200	LOC_Os02g49840	dwarf	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Here we report that OsMADS57 interacts with OsTB1 (TEOSINTE BRANCHED1) and targets D14 (Dwarf14) to control the outgrowth of axillary buds in rice
OsMADS57	Os02g0731200	LOC_Os02g49840	dwarf	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14
OsMADS57	Os02g0731200	LOC_Os02g49840	transcription factor	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	Here, we demonstrate that interacting transcription factors OsMADS57 and OsTB1 directly target the defense gene OsWRKY94 and the organogenesis gene D14 to trade off the functions controlling/moderating rice tolerance to cold
OsMADS57	Os02g0731200	LOC_Os02g49840	tillering	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	However, D14 transcription was directly promoted by OsMADS57 for suppressing tillering under the chilling treatment, whereas D14 was repressed for enhancing tillering under normal condition
OsMADS57	Os02g0731200	LOC_Os02g49840	growth	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	Overexpression of OsMADS57 maintains rice tiller growth under chilling stress
OsMADS57	Os02g0731200	LOC_Os02g49840	tiller	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	Overexpression of OsMADS57 maintains rice tiller growth under chilling stress
OsMADS57	Os02g0731200	LOC_Os02g49840	defense	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.
OsMADS57	Os02g0731200	LOC_Os02g49840	defense	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	Here, we demonstrate that interacting transcription factors OsMADS57 and OsTB1 directly target the defense gene OsWRKY94 and the organogenesis gene D14 to trade off the functions controlling/moderating rice tolerance to cold
OsMADS57	Os02g0731200	LOC_Os02g49840	tolerance	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	Here, we demonstrate that interacting transcription factors OsMADS57 and OsTB1 directly target the defense gene OsWRKY94 and the organogenesis gene D14 to trade off the functions controlling/moderating rice tolerance to cold
OsMADS57	Os02g0731200	LOC_Os02g49840	tolerance	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	We demonstrated that OsMADS57 and OsTB1 conversely affect rice chilling tolerance via targeting OsWRKY94
OsMADS57	Os02g0731200	LOC_Os02g49840	cold stress	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	OsMADS57 binds directly to the promoter of OsWRKY94, activating its transcription for the cold stress response, while suppressing its activity under normal temperatures
OsMADS57	Os02g0731200	LOC_Os02g49840	stress	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	Overexpression of OsMADS57 maintains rice tiller growth under chilling stress
OsMADS57	Os02g0731200	LOC_Os02g49840	stress	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	OsMADS57 binds directly to the promoter of OsWRKY94, activating its transcription for the cold stress response, while suppressing its activity under normal temperatures
OsMADS57	Os02g0731200	LOC_Os02g49840	chilling	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	Overexpression of OsMADS57 maintains rice tiller growth under chilling stress
OsMADS57	Os02g0731200	LOC_Os02g49840	chilling	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	However, D14 transcription was directly promoted by OsMADS57 for suppressing tillering under the chilling treatment, whereas D14 was repressed for enhancing tillering under normal condition
OsMADS57	Os02g0731200	LOC_Os02g49840	chilling	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	We demonstrated that OsMADS57 and OsTB1 conversely affect rice chilling tolerance via targeting OsWRKY94
OsMADS57	Os02g0731200	LOC_Os02g49840	stress response	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	OsMADS57 binds directly to the promoter of OsWRKY94, activating its transcription for the cold stress response, while suppressing its activity under normal temperatures
OsMADS57	Os02g0731200	LOC_Os02g49840	xylem	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	OsMADS57 is abundantly expressed in xylem parenchyma cells of root stele and is induced by nitrate
OsMADS57	Os02g0731200	LOC_Os02g49840	xylem	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	2 mM nitrate, osmads57 mutants had 31% less xylem loading of nitrate, while overexpression lines had two-fold higher levels
OsMADS57	Os02g0731200	LOC_Os02g49840	root	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	OsMADS57 is abundantly expressed in xylem parenchyma cells of root stele and is induced by nitrate
OsMADS57	Os02g0731200	LOC_Os02g49840	root	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	Rapid NO3- root influx experiments showed that mutation of OsMADS57 did not affect root nitrate uptake
OsMADS57	Os02g0731200	LOC_Os02g49840	root	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	Moreover, seminal root elongation was inhibited in osmads57 mutants, which may be associated with higher auxin levels in and auxin polar transport to root tips of mutant plants
OsMADS57	Os02g0731200	LOC_Os02g49840	root	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	Taken together, these results suggest that OsMADS57 has a role in regulating nitrate translocation from root to shoot via OsNRT2
OsMADS57	Os02g0731200	LOC_Os02g49840	shoot	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	Taken together, these results suggest that OsMADS57 has a role in regulating nitrate translocation from root to shoot via OsNRT2
OsMADS57	Os02g0731200	LOC_Os02g49840	auxin	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	Moreover, seminal root elongation was inhibited in osmads57 mutants, which may be associated with higher auxin levels in and auxin polar transport to root tips of mutant plants
OsMADS57	Os02g0731200	LOC_Os02g49840	root elongation	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	Moreover, seminal root elongation was inhibited in osmads57 mutants, which may be associated with higher auxin levels in and auxin polar transport to root tips of mutant plants
OsMADS57	Os02g0731200	LOC_Os02g49840	nitrate	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	OsMADS57 is abundantly expressed in xylem parenchyma cells of root stele and is induced by nitrate
OsMADS57	Os02g0731200	LOC_Os02g49840	nitrate	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	Rapid NO3- root influx experiments showed that mutation of OsMADS57 did not affect root nitrate uptake
OsMADS57	Os02g0731200	LOC_Os02g49840	nitrate	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	3a functions in nitrate translocation, indicating the possible interaction between OsMADS57 and OsNRT2
OsMADS57	Os02g0731200	LOC_Os02g49840	nitrate	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	Taken together, these results suggest that OsMADS57 has a role in regulating nitrate translocation from root to shoot via OsNRT2
OsMADS57	Os02g0731200	LOC_Os02g49840	xylem parenchyma	A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation.	OsMADS57 is abundantly expressed in xylem parenchyma cells of root stele and is induced by nitrate
OsMADS57	Os02g0731200	LOC_Os02g49840	transcription factor	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.
OsMADS57	Os02g0731200	LOC_Os02g49840	stem	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	These results indicated that OsMADS57 acts as an important transcriptional regulator that regulates stem elongation and panicle exsertion in rice via GA-mediated regulatory pathway
OsMADS57	Os02g0731200	LOC_Os02g49840	growth	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Here we investigated the functions of OsMADS57 in plant vegetative growth in rice (Oryza sativa)
OsMADS57	Os02g0731200	LOC_Os02g49840	panicle	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Knockdown of OsMADS57 reduced the plant height, internode elongation and panicle exsertion in rice plants
OsMADS57	Os02g0731200	LOC_Os02g49840	panicle	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	These results indicated that OsMADS57 acts as an important transcriptional regulator that regulates stem elongation and panicle exsertion in rice via GA-mediated regulatory pathway
OsMADS57	Os02g0731200	LOC_Os02g49840	gibberellin	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.
OsMADS57	Os02g0731200	LOC_Os02g49840	gibberellin	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Moreover, OsMADS57 knockdown plants were more sensitive to gibberellic acid (GA3), and contained less bioactive GA3 than wild-type plants, which implied that OsMADS57 is involved in gibberellin (GA) pathway
OsMADS57	Os02g0731200	LOC_Os02g49840	vegetative	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Here we investigated the functions of OsMADS57 in plant vegetative growth in rice (Oryza sativa)
OsMADS57	Os02g0731200	LOC_Os02g49840	ga	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	The level of EUI1 transcripts involved in GA deactivation was also increased in OsMADS57 knockdown plants
OsMADS57	Os02g0731200	LOC_Os02g49840	ga	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	In addition, OsMADS57 also modulated the expression of multiple genes involved in GA metabolism or GA signaling pathway, indicating the key and complex regulatory role of OsMADS57 in GA pathway in rice
OsMADS57	Os02g0731200	LOC_Os02g49840	height	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.
OsMADS57	Os02g0731200	LOC_Os02g49840	plant height	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.
OsMADS57	Os02g0731200	LOC_Os02g49840	plant height	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Knockdown of OsMADS57 reduced the plant height, internode elongation and panicle exsertion in rice plants
OsMADS57	Os02g0731200	LOC_Os02g49840	Gibberellin	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.
OsMADS57	Os02g0731200	LOC_Os02g49840	Gibberellin	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Moreover, OsMADS57 knockdown plants were more sensitive to gibberellic acid (GA3), and contained less bioactive GA3 than wild-type plants, which implied that OsMADS57 is involved in gibberellin (GA) pathway
OsMADS57	Os02g0731200	LOC_Os02g49840	GA	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	The level of EUI1 transcripts involved in GA deactivation was also increased in OsMADS57 knockdown plants
OsMADS57	Os02g0731200	LOC_Os02g49840	GA	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	In addition, OsMADS57 also modulated the expression of multiple genes involved in GA metabolism or GA signaling pathway, indicating the key and complex regulatory role of OsMADS57 in GA pathway in rice
OsMADS57	Os02g0731200	LOC_Os02g49840	transcriptional regulator	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	These results indicated that OsMADS57 acts as an important transcriptional regulator that regulates stem elongation and panicle exsertion in rice via GA-mediated regulatory pathway
OsMADS57	Os02g0731200	LOC_Os02g49840	GA deactivation	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	The level of EUI1 transcripts involved in GA deactivation was also increased in OsMADS57 knockdown plants
OsMADS57	Os02g0731200	LOC_Os02g49840	transcription factor	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	However, the role of the transcription factor OsMADS57 under salinity stress is still unknown
OsMADS57	Os02g0731200	LOC_Os02g49840	salinity	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	However, the role of the transcription factor OsMADS57 under salinity stress is still unknown
OsMADS57	Os02g0731200	LOC_Os02g49840	salt	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Moreover, less reactive oxygen species (ROS) accumulated in OsMADS57 overexpressing lines when exposed to salt stress, as measured by 3, 3'-diaminobenzidine (DAB) or nitroblue tetrazolium (NBT) staining
OsMADS57	Os02g0731200	LOC_Os02g49840	salt	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Further experiments exhibited that overexpression of OsMADS57 in rice significantly increased the tolerance ability of plants to oxidative damage under salt stress, mainly by increasing the activities of antioxidative enzymes such as superoxide dismutase (SOD) and peroxidase (POD), reducing malonaldehyde (MDA) content and improving the expression of stress-related genes
OsMADS57	Os02g0731200	LOC_Os02g49840	salt	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Taken together, these results demonstrated that OsMADS57 plays a positive role in enhancing salt tolerance by activating the antioxidant system
OsMADS57	Os02g0731200	LOC_Os02g49840	tolerance	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Further experiments exhibited that overexpression of OsMADS57 in rice significantly increased the tolerance ability of plants to oxidative damage under salt stress, mainly by increasing the activities of antioxidative enzymes such as superoxide dismutase (SOD) and peroxidase (POD), reducing malonaldehyde (MDA) content and improving the expression of stress-related genes
OsMADS57	Os02g0731200	LOC_Os02g49840	tolerance	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Taken together, these results demonstrated that OsMADS57 plays a positive role in enhancing salt tolerance by activating the antioxidant system
OsMADS57	Os02g0731200	LOC_Os02g49840	oxidative	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Further experiments exhibited that overexpression of OsMADS57 in rice significantly increased the tolerance ability of plants to oxidative damage under salt stress, mainly by increasing the activities of antioxidative enzymes such as superoxide dismutase (SOD) and peroxidase (POD), reducing malonaldehyde (MDA) content and improving the expression of stress-related genes
OsMADS57	Os02g0731200	LOC_Os02g49840	salt tolerance	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Taken together, these results demonstrated that OsMADS57 plays a positive role in enhancing salt tolerance by activating the antioxidant system
OsMADS57	Os02g0731200	LOC_Os02g49840	salt stress	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Moreover, less reactive oxygen species (ROS) accumulated in OsMADS57 overexpressing lines when exposed to salt stress, as measured by 3, 3'-diaminobenzidine (DAB) or nitroblue tetrazolium (NBT) staining
OsMADS57	Os02g0731200	LOC_Os02g49840	salt stress	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Further experiments exhibited that overexpression of OsMADS57 in rice significantly increased the tolerance ability of plants to oxidative damage under salt stress, mainly by increasing the activities of antioxidative enzymes such as superoxide dismutase (SOD) and peroxidase (POD), reducing malonaldehyde (MDA) content and improving the expression of stress-related genes
OsMADS57	Os02g0731200	LOC_Os02g49840	stress	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	However, the role of the transcription factor OsMADS57 under salinity stress is still unknown
OsMADS57	Os02g0731200	LOC_Os02g49840	salinity stress	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	However, the role of the transcription factor OsMADS57 under salinity stress is still unknown
OsMADS57	Os02g0731200	LOC_Os02g49840	reactive oxygen species	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants	Moreover, less reactive oxygen species (ROS) accumulated in OsMADS57 overexpressing lines when exposed to salt stress, as measured by 3, 3'-diaminobenzidine (DAB) or nitroblue tetrazolium (NBT) staining
OSMADS58	Os05g0203800	LOC_Os05g11414	floral	Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa	By contrast, RNA-silenced lines of OSMADS58 develop astonishing flowers that reiterate a set of floral organs, including lodicules, stamens, and carpel-like organs, suggesting that determinacy of the floral meristem is severely affected
OSMADS58	Os05g0203800	LOC_Os05g11414	stamen	Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa	By contrast, RNA-silenced lines of OSMADS58 develop astonishing flowers that reiterate a set of floral organs, including lodicules, stamens, and carpel-like organs, suggesting that determinacy of the floral meristem is severely affected
OSMADS58	Os05g0203800	LOC_Os05g11414	stamen	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58	The transgenic rice expressing OsMADS58SRDX had reiterated formation of lodicule-like organs instead of stamens and carpel, a typical phenotype of ag mutant
OSMADS58	Os05g0203800	LOC_Os05g11414	stamen	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58	Although the transgenic tall fescue did not have the stamen alterations seen in SPW1SRDX and OsMADS58SRDX rice, they either produced no pollen or produced immature pollen; thus, the anthers were not dehiscent and the plants were male-sterile
OSMADS58	Os05g0203800	LOC_Os05g11414	pollen	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58	Although the transgenic tall fescue did not have the stamen alterations seen in SPW1SRDX and OsMADS58SRDX rice, they either produced no pollen or produced immature pollen; thus, the anthers were not dehiscent and the plants were male-sterile
OSMADS58	Os05g0203800	LOC_Os05g11414	sterility	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58	We first introduced Os12g0207000SRDX, Os01g0886200SRDX and OsMADS58SRDX into rice for evaluation of their abilities to induce male sterility
OSMADS58	Os05g0203800	LOC_Os05g11414	sterility	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58	We also obtained a mild phenotype of OsMADS58SRDX tall fescue, which exhibited only the male sterility
OSMADS58	Os05g0203800	LOC_Os05g11414	flower	Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa	By contrast, RNA-silenced lines of OSMADS58 develop astonishing flowers that reiterate a set of floral organs, including lodicules, stamens, and carpel-like organs, suggesting that determinacy of the floral meristem is severely affected
OSMADS58	Os05g0203800	LOC_Os05g11414	sterile	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58	Although the transgenic tall fescue did not have the stamen alterations seen in SPW1SRDX and OsMADS58SRDX rice, they either produced no pollen or produced immature pollen; thus, the anthers were not dehiscent and the plants were male-sterile
OSMADS58	Os05g0203800	LOC_Os05g11414	sterile	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58
OSMADS58	Os05g0203800	LOC_Os05g11414	anther	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58	Although the transgenic tall fescue did not have the stamen alterations seen in SPW1SRDX and OsMADS58SRDX rice, they either produced no pollen or produced immature pollen; thus, the anthers were not dehiscent and the plants were male-sterile
OSMADS58	Os05g0203800	LOC_Os05g11414	meristem	Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa	By contrast, RNA-silenced lines of OSMADS58 develop astonishing flowers that reiterate a set of floral organs, including lodicules, stamens, and carpel-like organs, suggesting that determinacy of the floral meristem is severely affected
OSMADS58	Os05g0203800	LOC_Os05g11414	lemma	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58	Some lines of OsMADS58SRDX tall fescue showed a cleistogamous phenotype in which the lodicules were homeotically transformed into lemma-like organs
OSMADS58	Os05g0203800	LOC_Os05g11414	floral meristem	Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa	By contrast, RNA-silenced lines of OSMADS58 develop astonishing flowers that reiterate a set of floral organs, including lodicules, stamens, and carpel-like organs, suggesting that determinacy of the floral meristem is severely affected
OSMADS58	Os05g0203800	LOC_Os05g11414	development	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	 Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OSMADS58	Os05g0203800	LOC_Os05g11414	floral	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	 Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OSMADS58	Os05g0203800	LOC_Os05g11414	meristem	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	 Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OSMADS58	Os05g0203800	LOC_Os05g11414	floral meristem	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	 Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OSMADS58	Os05g0203800	LOC_Os05g11414	ovule	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	 Furthermore, our results indicate important roles of OsMADS32 in defining stamen, pistil and ovule development through physical and genetic interactions with OsMADS1, OsMADS58 and OsMADS13, and in specifying floral meristem identity with OsMADS6, OsMADS3 and OsMADS58 respectively
OSMADS58	Os05g0203800	LOC_Os05g11414	development	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	Rice (Oryza sativa) OsMADS58 is a C-class MADS box protein, and characterization of a transposon insertion mutant osmads58 suggested that OsMADS58 plays a role in stamen development
OSMADS58	Os05g0203800	LOC_Os05g11414	development	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	 This CRISPR mutant line exhibited stronger changes in expression of OsMADS58 target genes compared with the osmads58 dSpm (transposon insertion) line, along with changes in multiple pathways related to early stamen development
OSMADS58	Os05g0203800	LOC_Os05g11414	development	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	 These findings strongly suggest that the pleiotropic effects of OsMADS58 on stamen development derive from a potential role in stabilizing gene regulatory circuits during early stamen development
OSMADS58	Os05g0203800	LOC_Os05g11414	tapetum	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	 Here, we report that the CRISPR knockout mutant osmads58 exhibits complex altered phenotypes, including anomalous diploid germ cells, aberrant meiosis, and delayed tapetum degeneration
OSMADS58	Os05g0203800	LOC_Os05g11414	tapetum degeneration	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	 Here, we report that the CRISPR knockout mutant osmads58 exhibits complex altered phenotypes, including anomalous diploid germ cells, aberrant meiosis, and delayed tapetum degeneration
OSMADS58	Os05g0203800	LOC_Os05g11414	stamen	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.
OSMADS58	Os05g0203800	LOC_Os05g11414	stamen	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	Rice (Oryza sativa) OsMADS58 is a C-class MADS box protein, and characterization of a transposon insertion mutant osmads58 suggested that OsMADS58 plays a role in stamen development
OSMADS58	Os05g0203800	LOC_Os05g11414	stamen	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	 This CRISPR mutant line exhibited stronger changes in expression of OsMADS58 target genes compared with the osmads58 dSpm (transposon insertion) line, along with changes in multiple pathways related to early stamen development
OSMADS58	Os05g0203800	LOC_Os05g11414	stamen	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	 These findings strongly suggest that the pleiotropic effects of OsMADS58 on stamen development derive from a potential role in stabilizing gene regulatory circuits during early stamen development
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	OsMADS6 was initially named as MFO1 for mosaic floral organs based on its moderate mutant phenotypes
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	spikelet	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	Here, we report a null allele of OsMADS6 (Osmads6-5), which exhibited a strong mutant phenotype in spikelet without affecting vegetative traits, causing all floral organs except lemma homeotically transformed into lemma-like organs (LLOs) as well as an indeterminate floral meristem, thus resulting in a mutant floret consisting of reiterating whorls of lemma and LLOs
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Here, we describe an AGL6-like gene in rice (Oryza sativa), MOSAIC FLORAL ORGANS1 (MFO1/MADS6), that regulates floral organ identity and floral meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Furthermore, the determinacy of the floral meristem was lost, and extra carpels or spikelets developed in mfo1 florets
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	flower	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	So far, four moderate or weak mutant alleles of OsMADS6 have been described, providing valuable insights into its role in flower development
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	flower	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	Taken together, our results revealed that OsMADS6 acts as a critical regulator for early flower development in rice and provide novel insights into the molecular mechanism of OsMADS6
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	flower	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	OsMADS17 has been shown to play a minor role in floral development and appears to result from a duplication of OsMADS6
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	Here, we report a null allele of OsMADS6 (Osmads6-5), which exhibited a strong mutant phenotype in spikelet without affecting vegetative traits, causing all floral organs except lemma homeotically transformed into lemma-like organs (LLOs) as well as an indeterminate floral meristem, thus resulting in a mutant floret consisting of reiterating whorls of lemma and LLOs
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Here, we show the biological role of the AGL6-like gene, OsMADS6, in specifying floral organ and meristem identities in rice (Oryza sativa L
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	OsMADS6 was strongly expressed in the floral meristem at early stages
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Compared to wild type plants, osmads6 mutants displayed altered palea identity, extra glume-like or mosaic organs, abnormal carpel development and loss of floral meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Strikingly, mutation of a SEPALLATA (SEP)-like gene, OsMADS1 (LHS1), enhanced the defect of osmads6 flowers, and no inner floral organs or glume-like structures were observed in whorls 2 and 3 of osmads1-z osmads6-1 flowers
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Our finding, therefore, suggests that the ancient OsMADS6 gene is able to specify floral state by determining floral organ and meristem identities in monocot crop rice together with OsMADS1
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	palea	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Subsequently, OsMADS6 transcripts were mainly detectable in paleas, lodicules, carpels and the integument of ovule, as well as in the receptacle
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	palea	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Compared to wild type plants, osmads6 mutants displayed altered palea identity, extra glume-like or mosaic organs, abnormal carpel development and loss of floral meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	OsMADS6 was strongly expressed in the floral meristem at early stages
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Compared to wild type plants, osmads6 mutants displayed altered palea identity, extra glume-like or mosaic organs, abnormal carpel development and loss of floral meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	starch	OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa)	Further investigation shows that ADP-glucose pyrophosphorylase genes, encoding the rate-limiting step enzyme in the starch synthesis pathway, are subject to the regulation of OsMADS6
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	vegetative	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	Here, we report a null allele of OsMADS6 (Osmads6-5), which exhibited a strong mutant phenotype in spikelet without affecting vegetative traits, causing all floral organs except lemma homeotically transformed into lemma-like organs (LLOs) as well as an indeterminate floral meristem, thus resulting in a mutant floret consisting of reiterating whorls of lemma and LLOs
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	auxin	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral meristem	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Here, we describe an AGL6-like gene in rice (Oryza sativa), MOSAIC FLORAL ORGANS1 (MFO1/MADS6), that regulates floral organ identity and floral meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral meristem	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Furthermore, the determinacy of the floral meristem was lost, and extra carpels or spikelets developed in mfo1 florets
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	Here, we report a null allele of OsMADS6 (Osmads6-5), which exhibited a strong mutant phenotype in spikelet without affecting vegetative traits, causing all floral organs except lemma homeotically transformed into lemma-like organs (LLOs) as well as an indeterminate floral meristem, thus resulting in a mutant floret consisting of reiterating whorls of lemma and LLOs
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	flower	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Strikingly, mutation of a SEPALLATA (SEP)-like gene, OsMADS1 (LHS1), enhanced the defect of osmads6 flowers, and no inner floral organs or glume-like structures were observed in whorls 2 and 3 of osmads1-z osmads6-1 flowers
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	flower	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	In the flower of mfo1 mutants, the identities of palea and lodicule are disturbed, and mosaic organs were observed
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	spikelet	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Furthermore, the determinacy of the floral meristem was lost, and extra carpels or spikelets developed in mfo1 florets
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	spikelet	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Whereas single mutants in either MFO1 or the SEPALLATA-like gene LHS1 showed moderate phenotypes, the mfo1 lhs1 double mutant showed a severe phenotype, including the loss of spikelet meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	flower	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	OsMGH3/OsGH3-8 is expressed abundantly in rice florets and is regulated by two related and redundant transcription factors, OsMADS1 and OsMADS6, but its contribution to flower development is not known
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	stamen	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	In consistently, over-expression of OsMADS6 led to additional lodicule-, stamen- and carpel-like organs
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	stamen	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	Expression analysis showed that OsMADS6 controls the formation of the incipient primordia of lodicule, stamen and carpel via regulating the expression of class B, C and SEP-like MADS-box genes
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	flower	OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa)	Here, we report that OsMADS6 is highly expressed in flower and endosperm in Oryza sativa (rice)
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	spikelet meristem	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Whereas single mutants in either MFO1 or the SEPALLATA-like gene LHS1 showed moderate phenotypes, the mfo1 lhs1 double mutant showed a severe phenotype, including the loss of spikelet meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral meristem	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	Here, we report a null allele of OsMADS6 (Osmads6-5), which exhibited a strong mutant phenotype in spikelet without affecting vegetative traits, causing all floral organs except lemma homeotically transformed into lemma-like organs (LLOs) as well as an indeterminate floral meristem, thus resulting in a mutant floret consisting of reiterating whorls of lemma and LLOs
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Here, we show the biological role of the AGL6-like gene, OsMADS6, in specifying floral organ and meristem identities in rice (Oryza sativa L
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	OsMADS6 was strongly expressed in the floral meristem at early stages
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Compared to wild type plants, osmads6 mutants displayed altered palea identity, extra glume-like or mosaic organs, abnormal carpel development and loss of floral meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	Our finding, therefore, suggests that the ancient OsMADS6 gene is able to specify floral state by determining floral organ and meristem identities in monocot crop rice together with OsMADS1
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice	The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	endosperm	OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa)	Here, we report that OsMADS6 is highly expressed in flower and endosperm in Oryza sativa (rice)
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	endosperm	OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa)	OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa)
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Here, we describe an AGL6-like gene in rice (Oryza sativa), MOSAIC FLORAL ORGANS1 (MFO1/MADS6), that regulates floral organ identity and floral meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Furthermore, the determinacy of the floral meristem was lost, and extra carpels or spikelets developed in mfo1 florets
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	meristem	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	Whereas single mutants in either MFO1 or the SEPALLATA-like gene LHS1 showed moderate phenotypes, the mfo1 lhs1 double mutant showed a severe phenotype, including the loss of spikelet meristem determinacy
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	palea	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice	In the flower of mfo1 mutants, the identities of palea and lodicule are disturbed, and mosaic organs were observed
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	transcription factor	Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility	OsMGH3/OsGH3-8 is expressed abundantly in rice florets and is regulated by two related and redundant transcription factors, OsMADS1 and OsMADS6, but its contribution to flower development is not known
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	lemma	Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)	Here, we report a null allele of OsMADS6 (Osmads6-5), which exhibited a strong mutant phenotype in spikelet without affecting vegetative traits, causing all floral organs except lemma homeotically transformed into lemma-like organs (LLOs) as well as an indeterminate floral meristem, thus resulting in a mutant floret consisting of reiterating whorls of lemma and LLOs
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	grain	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	However, in contrast to other osmads6 alleles, the afg1 mutant showed altered grain size and grain quality, with decreased total starch and amylose contents, and increased protein and soluble sugar contents
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	grain	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	The analysis of transcriptional activity suggested that AFG1 is a transcriptional activator and may affect grain size by regulating the expression levels of several genes related to cell expansion and proliferation in the afg1 mutant
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	grain	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	These results revealed that AFG1 plays an important role in determining palea identity and affecting grain yield and quality in rice
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	starch	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	However, in contrast to other osmads6 alleles, the afg1 mutant showed altered grain size and grain quality, with decreased total starch and amylose contents, and increased protein and soluble sugar contents
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	grain yield	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	These results revealed that AFG1 plays an important role in determining palea identity and affecting grain yield and quality in rice
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	yield	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	These results revealed that AFG1 plays an important role in determining palea identity and affecting grain yield and quality in rice
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	grain size	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	However, in contrast to other osmads6 alleles, the afg1 mutant showed altered grain size and grain quality, with decreased total starch and amylose contents, and increased protein and soluble sugar contents
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	grain size	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	The analysis of transcriptional activity suggested that AFG1 is a transcriptional activator and may affect grain size by regulating the expression levels of several genes related to cell expansion and proliferation in the afg1 mutant
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	palea	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	Similar to previously characterized osmads6 alleles, in the afg1 floret, the palea lost its marginal region and acquired the lemma identity
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	palea	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	These results revealed that AFG1 plays an important role in determining palea identity and affecting grain yield and quality in rice
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	lemma	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	Similar to previously characterized osmads6 alleles, in the afg1 floret, the palea lost its marginal region and acquired the lemma identity
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	sugar	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	However, in contrast to other osmads6 alleles, the afg1 mutant showed altered grain size and grain quality, with decreased total starch and amylose contents, and increased protein and soluble sugar contents
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	quality	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	These results revealed that AFG1 plays an important role in determining palea identity and affecting grain yield and quality in rice
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	transcriptional activator	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	The analysis of transcriptional activity suggested that AFG1 is a transcriptional activator and may affect grain size by regulating the expression levels of several genes related to cell expansion and proliferation in the afg1 mutant
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	grain quality	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	However, in contrast to other osmads6 alleles, the afg1 mutant showed altered grain size and grain quality, with decreased total starch and amylose contents, and increased protein and soluble sugar contents
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	transcription factor	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	We show here that the rice homeotic transcription factor OsMADS32 regulates floral patterning by interacting synergistically with E class protein OsMADS6 in a dosage-dependent manner
OsMADS6|MFO1|AFG1	Os02g0682200	LOC_Os02g45770	floral	OsMADS32 Regulates Rice Floral Patterning through Interactions with Multiple Floral Homeotic Genes	We show here that the rice homeotic transcription factor OsMADS32 regulates floral patterning by interacting synergistically with E class protein OsMADS6 in a dosage-dependent manner
OsMADS68|MADS68	Os11g0658700	LOC_Os11g43740	growth	Transcriptome Analysis of Triple Mutant for OsMADS62, OsMADS63, and OsMADS68 Reveals the Downstream Regulatory Mechanism for Pollen Germination in Rice (Oryza sativa).	 Thus, this study provides a molecular background for understanding pollen germination and tube growth mediated by OsMADS62, OsMADS63, and OsMADS68 with mature pollen preferred expression
OsMADS68|MADS68	Os11g0658700	LOC_Os11g43740	pollen	Transcriptome Analysis of Triple Mutant for OsMADS62, OsMADS63, and OsMADS68 Reveals the Downstream Regulatory Mechanism for Pollen Germination in Rice (Oryza sativa).	Transcriptome Analysis of Triple Mutant for OsMADS62, OsMADS63, and OsMADS68 Reveals the Downstream Regulatory Mechanism for Pollen Germination in Rice (Oryza sativa).
OsMADS68|MADS68	Os11g0658700	LOC_Os11g43740	pollen	Transcriptome Analysis of Triple Mutant for OsMADS62, OsMADS63, and OsMADS68 Reveals the Downstream Regulatory Mechanism for Pollen Germination in Rice (Oryza sativa).	 Thus, this study provides a molecular background for understanding pollen germination and tube growth mediated by OsMADS62, OsMADS63, and OsMADS68 with mature pollen preferred expression
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	stamen	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	flower	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	palea	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	floral	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	floral	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	leaf	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	lemma	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	lemma	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	temperature	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	temperature	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	OsMADS7 is greatly induced by high temperature at the early filling stage
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	temperature	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Constitutive suppression of OsMADS7 stabilizes amylose content under high temperature stress but results in low spikelet fertility
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	temperature	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	However, rice plants with both stable amylose content at high temperature and normal spikelet fertility can be obtained by specifically suppressing OsMADS7 in endosperm
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	temperature	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	A low filling rate and high expression of GBSSI were detected in OsMADS7 RNAi plants at high temperature, which may be correlated with stabilized amylose content in these transgenic seeds under high temperature
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	spikelet	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Constitutive suppression of OsMADS7 stabilizes amylose content under high temperature stress but results in low spikelet fertility
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	spikelet	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	However, rice plants with both stable amylose content at high temperature and normal spikelet fertility can be obtained by specifically suppressing OsMADS7 in endosperm
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	stress	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Constitutive suppression of OsMADS7 stabilizes amylose content under high temperature stress but results in low spikelet fertility
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	endosperm	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	endosperm	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	However, rice plants with both stable amylose content at high temperature and normal spikelet fertility can be obtained by specifically suppressing OsMADS7 in endosperm
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	endosperm	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Thus, specific suppression of OsMADS7 in endosperm could improve the stability of rice amylose content at high temperature, and such transgenic materials may be a valuable genetic resource for breeding rice with elite thermal resilience
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	breeding	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Thus, specific suppression of OsMADS7 in endosperm could improve the stability of rice amylose content at high temperature, and such transgenic materials may be a valuable genetic resource for breeding rice with elite thermal resilience
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	fertility	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Constitutive suppression of OsMADS7 stabilizes amylose content under high temperature stress but results in low spikelet fertility
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	fertility	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	However, rice plants with both stable amylose content at high temperature and normal spikelet fertility can be obtained by specifically suppressing OsMADS7 in endosperm
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	development	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	development	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.	These results indicate that in transgenic rice, OsMADS45 overexpressing ectopically activates the upstream genes Hd3a and RFT1 at early development stage and up-regulates the expression of OsMADS14 and OsMADS18, which induces early flowering
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	floral	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.	We introduce an OsMADS45 overexpression construct Ubi:OsMADS45 into TNG67 plants (an Hd1 (Heading date 1) and Ehd1 (Early heading date 1) defective rice cultivar grown in Taiwan), and we analyzed the expression patterns of various floral regulators to understand the regulation pathways affected by OsMADS45 expression
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	floral	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.	OsMADS45 overexpression did not alter the oscillating rhythm of the examined floral regulatory genes but advanced (by approximately 20<U+00A0>days) the up-regulate of two florigens, Hd3a (Heading Date 3a) and RFT1 (RICE FLOWERING LOCUS T1) and suppressed the expression of Hd1 at the juvenile stage
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	floral	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.	OsMADS45 overexpression did not influence other floral regulator genes upstream of Hd1 and Ehd1, such as OsGI (OsGIGANTEA), Ehd2/Osld1/RID1 and OsMADS50
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	height	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.	Previous studies have revealed that ectopic expression of OsMADS45 induces early flowering and influences reduced plant height under short-day (SD) conditions
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	heading date	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.	We introduce an OsMADS45 overexpression construct Ubi:OsMADS45 into TNG67 plants (an Hd1 (Heading date 1) and Ehd1 (Early heading date 1) defective rice cultivar grown in Taiwan), and we analyzed the expression patterns of various floral regulators to understand the regulation pathways affected by OsMADS45 expression
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	heading date	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.	OsMADS45 overexpression did not alter the oscillating rhythm of the examined floral regulatory genes but advanced (by approximately 20<U+00A0>days) the up-regulate of two florigens, Hd3a (Heading Date 3a) and RFT1 (RICE FLOWERING LOCUS T1) and suppressed the expression of Hd1 at the juvenile stage
OsMADS7|OsMADS45	Os08g0531700	LOC_Os08g41950	plant height	Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.	Previous studies have revealed that ectopic expression of OsMADS45 induces early flowering and influences reduced plant height under short-day (SD) conditions
OsMADS72|qSTL3	None	LOC_Os03g14850	stigma length	Fine Mapping and Candidate Gene Analysis of qSTL3, a Stigma Length-Conditioning Locus in Rice (Oryza sativa L.).	Fine Mapping and Candidate Gene Analysis of qSTL3, a Stigma Length-Conditioning Locus in Rice (Oryza sativa L.).
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	stamen	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	flower	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	lemma	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	lemma	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	floral	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	floral	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	leaf	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Simultaneous knockdown of the four rice SEP-like genes OsMADS1, OsMADS5, OsMADS7 and OsMADS8, leads to homeotic transformation of all floral organs except the lemma into leaf-like organs
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	palea	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)	Plants affected in both OsMADS7 and OsMADS8 show severe phenotypes including late flowering, homeotic changes of lodicules, stamens and carpels into palea/lemma-like organs, and a loss of floral determinacy
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	seed	A Novel Embryo Phenotype Associated With Interspecific Hybrid Weakness in Rice Is Controlled by the MADS-Domain Transcription Factor OsMADS8.	 Our results suggest that OsMADS8 is critical for floral organ determination and seed germination and that these effects are the result of regulation of the expression of OsEMF2b and its role in ABA signaling and catabolism
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	seed germination	A Novel Embryo Phenotype Associated With Interspecific Hybrid Weakness in Rice Is Controlled by the MADS-Domain Transcription Factor OsMADS8.	 Our results suggest that OsMADS8 is critical for floral organ determination and seed germination and that these effects are the result of regulation of the expression of OsEMF2b and its role in ABA signaling and catabolism
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	ABA	A Novel Embryo Phenotype Associated With Interspecific Hybrid Weakness in Rice Is Controlled by the MADS-Domain Transcription Factor OsMADS8.	 Overexpression of OsMADS8 led to decreased expression of OsEMF2b and ABA signaling-related genes including OsVP1/ABI3
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	ABA	A Novel Embryo Phenotype Associated With Interspecific Hybrid Weakness in Rice Is Controlled by the MADS-Domain Transcription Factor OsMADS8.	 Our results suggest that OsMADS8 is critical for floral organ determination and seed germination and that these effects are the result of regulation of the expression of OsEMF2b and its role in ABA signaling and catabolism
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	floral	A Novel Embryo Phenotype Associated With Interspecific Hybrid Weakness in Rice Is Controlled by the MADS-Domain Transcription Factor OsMADS8.	 Our results suggest that OsMADS8 is critical for floral organ determination and seed germination and that these effects are the result of regulation of the expression of OsEMF2b and its role in ABA signaling and catabolism
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	floral organ	A Novel Embryo Phenotype Associated With Interspecific Hybrid Weakness in Rice Is Controlled by the MADS-Domain Transcription Factor OsMADS8.	 Our results suggest that OsMADS8 is critical for floral organ determination and seed germination and that these effects are the result of regulation of the expression of OsEMF2b and its role in ABA signaling and catabolism
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	 ABA 	A Novel Embryo Phenotype Associated With Interspecific Hybrid Weakness in Rice Is Controlled by the MADS-Domain Transcription Factor OsMADS8.	 Overexpression of OsMADS8 led to decreased expression of OsEMF2b and ABA signaling-related genes including OsVP1/ABI3
OsMADS8|OsMADS24	Os09g0507200	LOC_Os09g32948	 ABA 	A Novel Embryo Phenotype Associated With Interspecific Hybrid Weakness in Rice Is Controlled by the MADS-Domain Transcription Factor OsMADS8.	 Our results suggest that OsMADS8 is critical for floral organ determination and seed germination and that these effects are the result of regulation of the expression of OsEMF2b and its role in ABA signaling and catabolism
OsMADS87	None	LOC_Os03g38610	seed	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.
OsMADS87	None	LOC_Os03g38610	seed	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	These seeds also have lower sensitivity to a moderate heat stress in terms of seed size reduction compared to seeds from wild type and plants over-expressing OsMADS87
OsMADS87	None	LOC_Os03g38610	development	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.
OsMADS87	None	LOC_Os03g38610	development	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Our findings suggest that OsMADS87 and several other genes identified in this study could be potential targets for improving thermal resilience of rice during reproductive development
OsMADS87	None	LOC_Os03g38610	reproductive	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Our findings suggest that OsMADS87 and several other genes identified in this study could be potential targets for improving thermal resilience of rice during reproductive development
OsMADS87	None	LOC_Os03g38610	stress	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.
OsMADS87	None	LOC_Os03g38610	stress	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	These seeds also have lower sensitivity to a moderate heat stress in terms of seed size reduction compared to seeds from wild type and plants over-expressing OsMADS87
OsMADS87	None	LOC_Os03g38610	endosperm	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.
OsMADS87	None	LOC_Os03g38610	endosperm	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Transgenic seeds deficient in OsMADS87 exhibit accelerated endosperm cellularization
OsMADS87	None	LOC_Os03g38610	seed size	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.
OsMADS87	None	LOC_Os03g38610	seed size	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	These seeds also have lower sensitivity to a moderate heat stress in terms of seed size reduction compared to seeds from wild type and plants over-expressing OsMADS87
OsMADS87	None	LOC_Os03g38610	endosperm development	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.
OsMADS87	None	LOC_Os03g38610	reproductive development	Molecular characterization of rice endosperm development under heat stress identifies OsMADS87 as a determinant of seed size and thermal sensitivity.	Our findings suggest that OsMADS87 and several other genes identified in this study could be potential targets for improving thermal resilience of rice during reproductive development
OsMAP	Os08g0518100	LOC_Os08g40620	meristem	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Otherwise, three CRL1-dependent auxin-responsive genes: FSM (FLATENNED SHOOT MERISTEM)/FAS1 (FASCIATA1), GTE4 (GENERAL TRANSCRIPTION FACTOR GROUP E4) and MAP (MICROTUBULE-ASSOCIATED PROTEIN) were identified
OsMAP	Os08g0518100	LOC_Os08g40620	shoot	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Otherwise, three CRL1-dependent auxin-responsive genes: FSM (FLATENNED SHOOT MERISTEM)/FAS1 (FASCIATA1), GTE4 (GENERAL TRANSCRIPTION FACTOR GROUP E4) and MAP (MICROTUBULE-ASSOCIATED PROTEIN) were identified
OsMAP	Os08g0518100	LOC_Os08g40620	auxin	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Otherwise, three CRL1-dependent auxin-responsive genes: FSM (FLATENNED SHOOT MERISTEM)/FAS1 (FASCIATA1), GTE4 (GENERAL TRANSCRIPTION FACTOR GROUP E4) and MAP (MICROTUBULE-ASSOCIATED PROTEIN) were identified
OsMAP	Os08g0518100	LOC_Os08g40620	auxin	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Nevertheless some genes, FAS1/FSM, GTE4 and MAP, require CRL1 to be induced by auxin suggesting that they are likely directly regulated by CRL1
OsMAP	Os08g0518100	LOC_Os08g40620	transcription factor	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice	Otherwise, three CRL1-dependent auxin-responsive genes: FSM (FLATENNED SHOOT MERISTEM)/FAS1 (FASCIATA1), GTE4 (GENERAL TRANSCRIPTION FACTOR GROUP E4) and MAP (MICROTUBULE-ASSOCIATED PROTEIN) were identified
OsMAPK33|OsMAPK3	Os02g0148100	LOC_Os02g05480	transcription factor	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	Here, we report that<U+00A0>the transcription factor OsbHLH002/OsICE1 is phosphorylated by OsMAPK3 under chilling stress
OsMAPK33|OsMAPK3	Os02g0148100	LOC_Os02g05480	resistance	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	Under chilling stress, active OsMAPK3 phosphorylates OsbHLH002, leading to accumulation of phospho-OsbHLH002, which promotes OsTPP1 expression and increases trehalose content and resistance to chilling damage
OsMAPK33|OsMAPK3	Os02g0148100	LOC_Os02g05480	stress	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	Here, we report that<U+00A0>the transcription factor OsbHLH002/OsICE1 is phosphorylated by OsMAPK3 under chilling stress
OsMAPK33|OsMAPK3	Os02g0148100	LOC_Os02g05480	chilling	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.
OsMAPK33|OsMAPK3	Os02g0148100	LOC_Os02g05480	chilling	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	Here, we report that<U+00A0>the transcription factor OsbHLH002/OsICE1 is phosphorylated by OsMAPK3 under chilling stress
OsMAPK33|OsMAPK3	Os02g0148100	LOC_Os02g05480	chilling	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	Under chilling stress, active OsMAPK3 phosphorylates OsbHLH002, leading to accumulation of phospho-OsbHLH002, which promotes OsTPP1 expression and increases trehalose content and resistance to chilling damage
OsMAPK4|OsMSRMK3	Os06g0699400	LOC_Os06g48590	panicle	Transcriptional Regulation of a Rice Mitogen-Activated Protein Kinase Gene, OsMAPK4, in Response to Environmental Stresses	OsMAPK4 transcripts were expressed strongly in mature leaves and weakly in young leaves and panicles
OsMAPK4|OsMSRMK3	Os06g0699400	LOC_Os06g48590	salinity	Transcriptional Regulation of a Rice Mitogen-Activated Protein Kinase Gene, OsMAPK4, in Response to Environmental Stresses	In addition, the mRNA level of OsMAPK4 was up-regulated under sugar starvation, high salinity and cold treatments
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	seed	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 is involved in salt stress response and seed dormancy control.
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	seed	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	The result suggests that OsMAPKKK63 may also be involved in seed dormancy control
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	drought	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 was found to be induced by several abiotic stresses, including high salinity, chilling and drought
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	salinity	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	The two rice MKKs are known mediator of the salt stress response, implying that OsMAPKKK63 may be involved in the high salinity response
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	salt	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 is involved in salt stress response and seed dormancy control.
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	salt	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	The two rice MKKs are known mediator of the salt stress response, implying that OsMAPKKK63 may be involved in the high salinity response
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	salt	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	Our analysis of an OsMAPKKK63 knockout mutant indeed demonstrated that it is necessary for normal response to high salt
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	abiotic stress	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 was found to be induced by several abiotic stresses, including high salinity, chilling and drought
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	salt stress	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 is involved in salt stress response and seed dormancy control.
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	salt stress	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	The two rice MKKs are known mediator of the salt stress response, implying that OsMAPKKK63 may be involved in the high salinity response
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	stress	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 is involved in salt stress response and seed dormancy control.
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	stress	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	The two rice MKKs are known mediator of the salt stress response, implying that OsMAPKKK63 may be involved in the high salinity response
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	biotic stress	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 was found to be induced by several abiotic stresses, including high salinity, chilling and drought
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	Kinase	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	Our data indicate that OsMAPKKK63 possesses in vitro kinase activity and that it interacts with rice MAP kinase kinase OsMKK1 and OsMKK6
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	chilling	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 was found to be induced by several abiotic stresses, including high salinity, chilling and drought
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	stress response	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 is involved in salt stress response and seed dormancy control.
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	stress response	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	The two rice MKKs are known mediator of the salt stress response, implying that OsMAPKKK63 may be involved in the high salinity response
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	dormancy	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	OsMAPKKK63 is involved in salt stress response and seed dormancy control.
OsMAPKKK63	Os01g0699100	LOC_Os01g50370	dormancy	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	The result suggests that OsMAPKKK63 may also be involved in seed dormancy control
OsMAR1	Os06g0695600	LOC_Os06g48040	root	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Heterogeneous overexpression of OsMAR1 in Arabidopsis showed retarded root growth compared with that of control plants, and then led to hypersensitivity phenotypes under high salinity stress
OsMAR1	Os06g0695600	LOC_Os06g48040	growth	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Heterogeneous overexpression of OsMAR1 in Arabidopsis showed retarded root growth compared with that of control plants, and then led to hypersensitivity phenotypes under high salinity stress
OsMAR1	Os06g0695600	LOC_Os06g48040	salinity	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Heterogeneous overexpression of OsMAR1 in Arabidopsis showed retarded root growth compared with that of control plants, and then led to hypersensitivity phenotypes under high salinity stress
OsMAR1	Os06g0695600	LOC_Os06g48040	ABA	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Herein, we found that a rice gene, OsMAR1 (Oryza sativa microtubule-associated RING finger protein 1), encoding the RING E3 ligase was highly expressed in response to high salinity, water deficit, and ABA treatment
OsMAR1	Os06g0695600	LOC_Os06g48040	stress	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Heterogeneous overexpression of OsMAR1 in Arabidopsis showed retarded root growth compared with that of control plants, and then led to hypersensitivity phenotypes under high salinity stress
OsMAR1	Os06g0695600	LOC_Os06g48040	salinity stress	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Heterogeneous overexpression of OsMAR1 in Arabidopsis showed retarded root growth compared with that of control plants, and then led to hypersensitivity phenotypes under high salinity stress
OsMAR1	Os06g0695600	LOC_Os06g48040	R protein	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Herein, we found that a rice gene, OsMAR1 (Oryza sativa microtubule-associated RING finger protein 1), encoding the RING E3 ligase was highly expressed in response to high salinity, water deficit, and ABA treatment
OsMAR1	Os06g0695600	LOC_Os06g48040	ABA	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Herein, we found that a rice gene, OsMAR1 (Oryza sativa microtubule-associated RING finger protein 1), encoding the RING E3 ligase was highly expressed in response to high salinity, water deficit, and ABA treatment
OsMAR1	Os06g0695600	LOC_Os06g48040	stress response	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Taken together, OsMAR1 negatively regulates the salt-stress response via the regulation of the OCPI2 protein in rice
OsMATE1	Os03g0188100	LOC_Os03g08900	disease	Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis	Our results reveal that OsMATE1 and OsMATE2 regulate plant growth and development as well as negatively affect disease resistance
OsMATE1	Os03g0188100	LOC_Os03g08900	growth	Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis	Our results reveal that OsMATE1 and OsMATE2 regulate plant growth and development as well as negatively affect disease resistance
OsMATE1	Os03g0188100	LOC_Os03g08900	disease resistance	Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis	Our results reveal that OsMATE1 and OsMATE2 regulate plant growth and development as well as negatively affect disease resistance
OsMATE2	Os05g0554000	LOC_Os05g48040	growth	Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis	Our results reveal that OsMATE1 and OsMATE2 regulate plant growth and development as well as negatively affect disease resistance
OsMATE2	Os05g0554000	LOC_Os05g48040	disease resistance	Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis	Our results reveal that OsMATE1 and OsMATE2 regulate plant growth and development as well as negatively affect disease resistance
OsMATE2	Os05g0554000	LOC_Os05g48040	disease	Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis	Our results reveal that OsMATE1 and OsMATE2 regulate plant growth and development as well as negatively affect disease resistance
OsMATE2	Os05g0554000	LOC_Os05g48040	grain	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.	The OsMATE2 upon constitutive expression in tobacco decreases root-to-shoot As transfer coefficient and its endosperm-specific silencing in rice reduces grain As content, broadening the role of MATE proteins in planta
OsMATE2	Os05g0554000	LOC_Os05g48040	grain	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.	Transgenic rice lines demonstrated significant reduction of both OsMATE2 transcript (~<U+2009>38-87%) and grain As content (36
OsMATE2	Os05g0554000	LOC_Os05g48040	oxidative stress	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.	6%) along with augmented As sensitivity by increasing oxidative stress compared to untransformed control plants, indicating the involvement of OsMATE2 in As accumulation
OsMATE2	Os05g0554000	LOC_Os05g48040	oxidative	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.	6%) along with augmented As sensitivity by increasing oxidative stress compared to untransformed control plants, indicating the involvement of OsMATE2 in As accumulation
OsMATE2	Os05g0554000	LOC_Os05g48040	stress	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.	6%) along with augmented As sensitivity by increasing oxidative stress compared to untransformed control plants, indicating the involvement of OsMATE2 in As accumulation
OsMATE2	Os05g0554000	LOC_Os05g48040	transporter	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.
OsMATE2	Os05g0554000	LOC_Os05g48040	arsenic accumulation	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.
OsMATL	Os03g0393900	LOC_Os03g27610	seed	OsMATL mutation induces haploid seed formation in indica rice.	OsMATL mutation induces haploid seed formation in indica rice.
OsMBD707	Os12g0620400	LOC_Os12g42550	growth	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice	Conclusion: The results of this study suggested that OsMBD707 plays important roles in rice growth and development, and should lead to further studies on the functions of OsMBD proteins in growth, development, or other molecular, cellular, and biological processes in rice
OsMBD707	Os12g0620400	LOC_Os12g42550	tiller	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice
OsMBD707	Os12g0620400	LOC_Os12g42550	tiller	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice	Transgenic rice overexpressing OsMBD707 displayed larger tiller angles and reduced photoperiod sensitivity-delayed flowering under short day (SD) and early flowering under long day (LD)
OsMBD707	Os12g0620400	LOC_Os12g42550	nucleus	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice	We further characterized the function of a rice class I MBD protein OsMBD707, and demonstrated that OsMBD707 is constitutively expressed and localized in the nucleus
OsMBD707	Os12g0620400	LOC_Os12g42550	flowering	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice	Transgenic rice overexpressing OsMBD707 displayed larger tiller angles and reduced photoperiod sensitivity-delayed flowering under short day (SD) and early flowering under long day (LD)
OsMBD707	Os12g0620400	LOC_Os12g42550	flowering	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice	RNA-seq analysis revealed that overexpression of OsMBD707 led to reduced photoperiod sensitivity in rice and to expression changes in flowering regulator genes in the Ehd1-Hd3a/RFT1 pathway
OsMBD707	Os12g0620400	LOC_Os12g42550	tiller angle	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice
OsMBD707	Os12g0620400	LOC_Os12g42550	tiller angle	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice	Transgenic rice overexpressing OsMBD707 displayed larger tiller angles and reduced photoperiod sensitivity-delayed flowering under short day (SD) and early flowering under long day (LD)
OsMBTB32	Os08g0523400	LOC_Os08g41190	seedlings	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	seedlings	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The OsMBTB32 transgenic seedlings (OE and RNAi) exhibited significant differences in various phenotypes, including plumule, radical, primary root, and shoot length, compared to WT seedlings
OsMBTB32	Os08g0523400	LOC_Os08g41190	seedlings	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	seedlings	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The OsMBTB32 transgenic seedlings (OE and RNAi) exhibited significant differences in various phenotypes, including plumule, radical, primary root, and shoot length, compared to WT seedlings
OsMBTB32	Os08g0523400	LOC_Os08g41190	shoot	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 Here, we found a novel MATH-BTB domain-containing OsMBTB32 protein that was highly expressed in leaf, root, and shoot
OsMBTB32	Os08g0523400	LOC_Os08g41190	shoot	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The OsMBTB32 transgenic seedlings (OE and RNAi) exhibited significant differences in various phenotypes, including plumule, radical, primary root, and shoot length, compared to WT seedlings
OsMBTB32	Os08g0523400	LOC_Os08g41190	shoot	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 Here, we found a novel MATH-BTB domain-containing OsMBTB32 protein that was highly expressed in leaf, root, and shoot
OsMBTB32	Os08g0523400	LOC_Os08g41190	shoot	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The OsMBTB32 transgenic seedlings (OE and RNAi) exhibited significant differences in various phenotypes, including plumule, radical, primary root, and shoot length, compared to WT seedlings
OsMBTB32	Os08g0523400	LOC_Os08g41190	stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 We further found that OsCUL1 proteins, particularly OsCUL1-1 and OsCUL1-3, interact with OsMBTB32 and may suppress the function of OsMBTB32 during salt stress
OsMBTB32	Os08g0523400	LOC_Os08g41190	stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 Moreover, OsWRKY42, a homolog of ZmWRKY114 which negatively regulates salt stress in rice, directly binds to the W-box of OsCUL1-1 and OsCUL1-3 promoters to promote the interaction of OsCUL1-1 and OsCUL1-3 with OsMBTB32 protein in rice
OsMBTB32	Os08g0523400	LOC_Os08g41190	stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 We further found that OsCUL1 proteins, particularly OsCUL1-1 and OsCUL1-3, interact with OsMBTB32 and may suppress the function of OsMBTB32 during salt stress
OsMBTB32	Os08g0523400	LOC_Os08g41190	stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 Moreover, OsWRKY42, a homolog of ZmWRKY114 which negatively regulates salt stress in rice, directly binds to the W-box of OsCUL1-1 and OsCUL1-3 promoters to promote the interaction of OsCUL1-1 and OsCUL1-3 with OsMBTB32 protein in rice
OsMBTB32	Os08g0523400	LOC_Os08g41190	salinity	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	salinity	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 We further found that OsCUL1 proteins, particularly OsCUL1-1 and OsCUL1-3, interact with OsMBTB32 and may suppress the function of OsMBTB32 during salt stress
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 Moreover, OsWRKY42, a homolog of ZmWRKY114 which negatively regulates salt stress in rice, directly binds to the W-box of OsCUL1-1 and OsCUL1-3 promoters to promote the interaction of OsCUL1-1 and OsCUL1-3 with OsMBTB32 protein in rice
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The overexpression of OsMBTB32 and OsCUL1-3 further confirmed the function of OsMBTB32 and OsCUL1s in salt tolerance in Arabidopsis
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 We further found that OsCUL1 proteins, particularly OsCUL1-1 and OsCUL1-3, interact with OsMBTB32 and may suppress the function of OsMBTB32 during salt stress
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 Moreover, OsWRKY42, a homolog of ZmWRKY114 which negatively regulates salt stress in rice, directly binds to the W-box of OsCUL1-1 and OsCUL1-3 promoters to promote the interaction of OsCUL1-1 and OsCUL1-3 with OsMBTB32 protein in rice
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The overexpression of OsMBTB32 and OsCUL1-3 further confirmed the function of OsMBTB32 and OsCUL1s in salt tolerance in Arabidopsis
OsMBTB32	Os08g0523400	LOC_Os08g41190	tolerance	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The overexpression of OsMBTB32 and OsCUL1-3 further confirmed the function of OsMBTB32 and OsCUL1s in salt tolerance in Arabidopsis
OsMBTB32	Os08g0523400	LOC_Os08g41190	tolerance	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The overexpression of OsMBTB32 and OsCUL1-3 further confirmed the function of OsMBTB32 and OsCUL1s in salt tolerance in Arabidopsis
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt tolerance	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The overexpression of OsMBTB32 and OsCUL1-3 further confirmed the function of OsMBTB32 and OsCUL1s in salt tolerance in Arabidopsis
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt tolerance	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The overexpression of OsMBTB32 and OsCUL1-3 further confirmed the function of OsMBTB32 and OsCUL1s in salt tolerance in Arabidopsis
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 We further found that OsCUL1 proteins, particularly OsCUL1-1 and OsCUL1-3, interact with OsMBTB32 and may suppress the function of OsMBTB32 during salt stress
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 Moreover, OsWRKY42, a homolog of ZmWRKY114 which negatively regulates salt stress in rice, directly binds to the W-box of OsCUL1-1 and OsCUL1-3 promoters to promote the interaction of OsCUL1-1 and OsCUL1-3 with OsMBTB32 protein in rice
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The up-regulation of the OsMBTB32 transcript in 2-week-old seedlings under salt stress suggests the significant role of the OsMBTB32 gene in salinity
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 We further found that OsCUL1 proteins, particularly OsCUL1-1 and OsCUL1-3, interact with OsMBTB32 and may suppress the function of OsMBTB32 during salt stress
OsMBTB32	Os08g0523400	LOC_Os08g41190	salt stress	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 Moreover, OsWRKY42, a homolog of ZmWRKY114 which negatively regulates salt stress in rice, directly binds to the W-box of OsCUL1-1 and OsCUL1-3 promoters to promote the interaction of OsCUL1-1 and OsCUL1-3 with OsMBTB32 protein in rice
OsMBTB32	Os08g0523400	LOC_Os08g41190	primary root	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The OsMBTB32 transgenic seedlings (OE and RNAi) exhibited significant differences in various phenotypes, including plumule, radical, primary root, and shoot length, compared to WT seedlings
OsMBTB32	Os08g0523400	LOC_Os08g41190	primary root	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	 The OsMBTB32 transgenic seedlings (OE and RNAi) exhibited significant differences in various phenotypes, including plumule, radical, primary root, and shoot length, compared to WT seedlings
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	seed	Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells	A promoter-reporter assay suggested that OsMCA1 mRNA is widely expressed in seed embryos, proximal and apical regions of shoots, and mesophyll cells of leaves and roots in rice
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	shoot	Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells	A promoter-reporter assay suggested that OsMCA1 mRNA is widely expressed in seed embryos, proximal and apical regions of shoots, and mesophyll cells of leaves and roots in rice
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	root	Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells	A promoter-reporter assay suggested that OsMCA1 mRNA is widely expressed in seed embryos, proximal and apical regions of shoots, and mesophyll cells of leaves and roots in rice
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	growth	Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells	We also generated and characterized OsMCA1-RNAi transgenic plants and cultured cells; OsMCA1-suppressed plants showed retarded growth and shortened rachises, while OsMCA1-suppressed cells carrying Ca2+-sensitive photoprotein aequorin showed partially impaired changes in cytosolic free Ca2+ concentration ([Ca2+]cyt) induced by hypo-osmotic shock and trinitrophenol, an activator of mechanosensitive channels
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	plant architecture	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	architecture	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	GA	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	GA deactivation	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice	Our results revealed the pad is a loss-of-function mutant of the OsMCA1/PAD, leading to upregulation of genes related to GA deactivation, which decreased bioactive GA levels.
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	seedlings	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice	PAD was universally expressed in rice tissues from the vegetative to reproductive growth stages, especially in seedlings, nodes and rachillae.
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	node	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice	PAD was universally expressed in rice tissues from the vegetative to reproductive growth stages, especially in seedlings, nodes and rachillae.
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	rachillae	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice	PAD was universally expressed in rice tissues from the vegetative to reproductive growth stages, especially in seedlings, nodes and rachillae.
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	architecture	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel OsDMT1 Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel OsDMT1 Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	homeostasis	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel OsDMT1 Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel OsDMT1 Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	dwarf	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel OsDMT1 Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.	Here, we isolated and characterized a T-DNA insertion rice mutant Osdmt1 (Oryza sativa dwarf and multi-tillering1) that exhibited a severe dwarf phenotype and multi-tillering
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	plasma membrane	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel OsDMT1 Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel OsDMT1 Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.
OsMCA1|PAD|OsDMT1	Os03g0157300	LOC_Os03g06120	plant architecture	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel OsDMT1 Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel OsDMT1 Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.
OsMCM2	Os06g0218500	LOC_Os06g11500	seed	Identification and characterization of a rice MCM2 homologue required for DNA replycation	We found OsMCM2 transcript expression in roots, leaves, and seeds, although expression levels differed slightly among the organs
OsMCM2	Os06g0218500	LOC_Os06g11500	root	Identification and characterization of a rice MCM2 homologue required for DNA replycation	We found OsMCM2 transcript expression in roots, leaves, and seeds, although expression levels differed slightly among the organs
OsMCM2	Os06g0218500	LOC_Os06g11500	cell cycle	Identification and characterization of a rice MCM2 homologue required for DNA replycation	Likewise, the OsMCM2 protein was ubiquitously expressed, but it was downregulated when nutritients were limiting, indicating that MCM2 expression (and therefore cell cycle progression) requires adequate nutrition
OsMDH1	Os01g0829800	LOC_Os01g61380	leaf	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	The OsMDH1 was expressed in different tissues of rice plants including leaf, leaf sheath, panicle, glume, bud, root, and stem and was induced in the presence of NaCl
OsMDH1	Os01g0829800	LOC_Os01g61380	chloroplast	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Transient expression of OsMDH1-GFP in rice protoplasts showed that OsMDH1 localizes to chloroplast
OsMDH1	Os01g0829800	LOC_Os01g61380	stem	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	The OsMDH1 was expressed in different tissues of rice plants including leaf, leaf sheath, panicle, glume, bud, root, and stem and was induced in the presence of NaCl
OsMDH1	Os01g0829800	LOC_Os01g61380	salt	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	In this study, we identified a new loss-of-function osmdh1 mutant displaying salt stress-tolerant phenotype
OsMDH1	Os01g0829800	LOC_Os01g61380	salt	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Transgenic rice plants overexpressing OsMDH1 (OsMDH1OX) displayed a salt stress-sensitive phenotype
OsMDH1	Os01g0829800	LOC_Os01g61380	salt	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Moreover, the pyridoxine content was higher in the osmdh1 mutant and lower in OsMDH1OX plants than in the NIP plants under the salt stress, indicating that OsMDH1 negatively regulates salt stress-induced pyridoxine accumulation
OsMDH1	Os01g0829800	LOC_Os01g61380	salt	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Together, our results establish a novel, negative regulatory role of OsMDH1 in salt stress tolerance by affecting vitamin B6 content of rice tissues
OsMDH1	Os01g0829800	LOC_Os01g61380	tolerance	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Together, our results establish a novel, negative regulatory role of OsMDH1 in salt stress tolerance by affecting vitamin B6 content of rice tissues
OsMDH1	Os01g0829800	LOC_Os01g61380	salt stress	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	In this study, we identified a new loss-of-function osmdh1 mutant displaying salt stress-tolerant phenotype
OsMDH1	Os01g0829800	LOC_Os01g61380	salt stress	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Transgenic rice plants overexpressing OsMDH1 (OsMDH1OX) displayed a salt stress-sensitive phenotype
OsMDH1	Os01g0829800	LOC_Os01g61380	salt stress	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Moreover, the pyridoxine content was higher in the osmdh1 mutant and lower in OsMDH1OX plants than in the NIP plants under the salt stress, indicating that OsMDH1 negatively regulates salt stress-induced pyridoxine accumulation
OsMDH1	Os01g0829800	LOC_Os01g61380	salt stress	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Together, our results establish a novel, negative regulatory role of OsMDH1 in salt stress tolerance by affecting vitamin B6 content of rice tissues
OsMDH1	Os01g0829800	LOC_Os01g61380	stress	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Together, our results establish a novel, negative regulatory role of OsMDH1 in salt stress tolerance by affecting vitamin B6 content of rice tissues
OsMDH1	Os01g0829800	LOC_Os01g61380	stress tolerance	Rice Plastidial NAD-Dependent Malate Dehydrogenase 1 Negatively Regulates Salt Stress Response by Reducing the Vitamin B6 Content.	Together, our results establish a novel, negative regulatory role of OsMDH1 in salt stress tolerance by affecting vitamin B6 content of rice tissues
OsMDH12.1	Os12g0632700	LOC_Os12g43630	salt tolerance	Genome-Wide Identification of MDH Family Genes and Their Association with Salt Tolerance in Rice	This study aimed to provide valuable information on the functional study of the rice MDH gene family related to salt stress response and revealed that OsMDH8.1 might be an important gene for the cultivar improvement of salt tolerance in rice.
OsMDH8.1	Os08g0434300	LOC_Os08g33720	salt tolerance	Genome-Wide Identification of MDH Family Genes and Their Association with Salt Tolerance in Rice	This study aimed to provide valuable information on the functional study of the rice MDH gene family related to salt stress response and revealed that OsMDH8.1 might be an important gene for the cultivar improvement of salt tolerance in rice.
OsMDHAR	Os09g0567300	LOC_Os09g39380	temperature	Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	High OsMDHAR expression also improved the fermentative capacity of the yeast during glucose-based batch fermentation at a standard cultivation temperature (30°C)
OsMDHAR	Os09g0567300	LOC_Os09g39380	growth	Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	To examine whether heterologous expression of MDHAR from Oryza sativa (OsMDHAR) can prevent the deleterious effects of unfavorable growth conditions, we constructed a transgenic yeast strain harboring a recombinant plasmid carrying OsMDHAR (p426GPD::OsMDHAR)
OsMDHAR	Os09g0567300	LOC_Os09g39380	oxidative stress	Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	These results suggest that heterologous OsMDHAR expression increases tolerance to reactive oxygen species-induced oxidative stress by improving cellular redox homeostasis and improves survival during fermentation, which enhances fermentative capacity
OsMDHAR	Os09g0567300	LOC_Os09g39380	tolerance	Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	These results suggest that heterologous OsMDHAR expression increases tolerance to reactive oxygen species-induced oxidative stress by improving cellular redox homeostasis and improves survival during fermentation, which enhances fermentative capacity
OsMDHAR	Os09g0567300	LOC_Os09g39380	oxidative	Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	These results suggest that heterologous OsMDHAR expression increases tolerance to reactive oxygen species-induced oxidative stress by improving cellular redox homeostasis and improves survival during fermentation, which enhances fermentative capacity
OsMDHAR	Os09g0567300	LOC_Os09g39380	stress	Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	These results suggest that heterologous OsMDHAR expression increases tolerance to reactive oxygen species-induced oxidative stress by improving cellular redox homeostasis and improves survival during fermentation, which enhances fermentative capacity
OsMDHAR	Os09g0567300	LOC_Os09g39380	homeostasis	Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	These results suggest that heterologous OsMDHAR expression increases tolerance to reactive oxygen species-induced oxidative stress by improving cellular redox homeostasis and improves survival during fermentation, which enhances fermentative capacity
OsMDHAR	Os09g0567300	LOC_Os09g39380	reactive oxygen species	Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	These results suggest that heterologous OsMDHAR expression increases tolerance to reactive oxygen species-induced oxidative stress by improving cellular redox homeostasis and improves survival during fermentation, which enhances fermentative capacity
OsMDHAR4	Os02g0707000	LOC_Os02g47790	leaf	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	OsMDHAR4 expression was detected in all tissues surveyed and peaked in leaf blade
OsMDHAR4	Os02g0707000	LOC_Os02g47790	resistance	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	In rice, however, the detailed roles of OsMDHAR4 in resistance against heat stress remains unclear
OsMDHAR4	Os02g0707000	LOC_Os02g47790	tolerance	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.
OsMDHAR4	Os02g0707000	LOC_Os02g47790	tolerance	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	In comparison with wild type, the osmdhar4 mutant exhibited improved tolerance to heat stress, whereas OsMDHAR4 overexpression lines exhibited enhanced sensitivity to heat stress
OsMDHAR4	Os02g0707000	LOC_Os02g47790	tolerance	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	Taken together, these results indicated that OsMDHAR4 negatively regulates tolerance to heat stress by mediating H2O2-induced stomatal closure in rice
OsMDHAR4	Os02g0707000	LOC_Os02g47790	stress	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	In rice, however, the detailed roles of OsMDHAR4 in resistance against heat stress remains unclear
OsMDHAR4	Os02g0707000	LOC_Os02g47790	stress	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	In comparison with wild type, the osmdhar4 mutant exhibited improved tolerance to heat stress, whereas OsMDHAR4 overexpression lines exhibited enhanced sensitivity to heat stress
OsMDHAR4	Os02g0707000	LOC_Os02g47790	stress	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	Taken together, these results indicated that OsMDHAR4 negatively regulates tolerance to heat stress by mediating H2O2-induced stomatal closure in rice
OsMDHAR4	Os02g0707000	LOC_Os02g47790	stomatal	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.
OsMDHAR4	Os02g0707000	LOC_Os02g47790	stomatal	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	Moreover, we found that suppression of OsMDHAR4 promoted stomatal closure and hydrogen peroxide accumulation, and overexpression of OsMDHAR4 increased stomatal opening and decreased hydrogen peroxide content in rice leaves
OsMDHAR4	Os02g0707000	LOC_Os02g47790	stomatal	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	Taken together, these results indicated that OsMDHAR4 negatively regulates tolerance to heat stress by mediating H2O2-induced stomatal closure in rice
OsMDHAR4	Os02g0707000	LOC_Os02g47790	heat tolerance	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.
OsMDP1	Os03g0186600	LOC_Os03g08754	root	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	Expression pattern analyses indicated that OsMDP1 is transcribed mainly in vegetative tissues, including the mature leaf, coleoptile, root-elongation zone, culm internode, and especially the joint region between the leaf blade and sheath
OsMDP1	Os03g0186600	LOC_Os03g08754	root	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	OsMDP1 deficiency resulted in shortened primary roots, elongated coleoptiles and enhanced lamina joint inclinations
OsMDP1	Os03g0186600	LOC_Os03g08754	leaf	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	Expression pattern analyses indicated that OsMDP1 is transcribed mainly in vegetative tissues, including the mature leaf, coleoptile, root-elongation zone, culm internode, and especially the joint region between the leaf blade and sheath
OsMDP1	Os03g0186600	LOC_Os03g08754	lamina	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	OsMDP1 deficiency resulted in shortened primary roots, elongated coleoptiles and enhanced lamina joint inclinations
OsMDP1	Os03g0186600	LOC_Os03g08754	sheath	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	Expression pattern analyses indicated that OsMDP1 is transcribed mainly in vegetative tissues, including the mature leaf, coleoptile, root-elongation zone, culm internode, and especially the joint region between the leaf blade and sheath
OsMDP1	Os03g0186600	LOC_Os03g08754	primary root	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	OsMDP1 deficiency resulted in shortened primary roots, elongated coleoptiles and enhanced lamina joint inclinations
OsMDP1	Os03g0186600	LOC_Os03g08754	cell elongation	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	OsMDP1 deficiency resulted in enhanced expression of OsXTR1, which encodes xyloglucan endotransglycosylase, the cell-wall loosening enzyme necessary for cell elongation, and modulated expressions of multiple genes involved in cell signalling and gene transcription, indicating the key negative regulatory role of OsMDP1 in BR signalling
OsMDP1	Os03g0186600	LOC_Os03g08754	BR	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	OsMDP1 deficiency resulted in enhanced expression of OsXTR1, which encodes xyloglucan endotransglycosylase, the cell-wall loosening enzyme necessary for cell elongation, and modulated expressions of multiple genes involved in cell signalling and gene transcription, indicating the key negative regulatory role of OsMDP1 in BR signalling
OsMDP1	Os03g0186600	LOC_Os03g08754	BR	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling
OsMDP1	Os03g0186600	LOC_Os03g08754	BR signaling	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling
OsMDP1	Os03g0186600	LOC_Os03g08754	transcription factor	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling
OsMDP1	Os03g0186600	LOC_Os03g08754	culm	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	Expression pattern analyses indicated that OsMDP1 is transcribed mainly in vegetative tissues, including the mature leaf, coleoptile, root-elongation zone, culm internode, and especially the joint region between the leaf blade and sheath
OsMDP1	Os03g0186600	LOC_Os03g08754	vegetative	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	Expression pattern analyses indicated that OsMDP1 is transcribed mainly in vegetative tissues, including the mature leaf, coleoptile, root-elongation zone, culm internode, and especially the joint region between the leaf blade and sheath
OsMeCP	None	None	silicon	Methyl-CpG binding domain protein acts to regulate the repair of cyclobutane pyrimidine dimers on rice DNA.	These findings indicate that OsMeCP acts as a negative regulator of silicon, and can mediate the repression of the transcription from Os10g0167600, which inhibits the photoreactivation of the photolyase involved in the repair of CPDs.
OsMED14_1	Os08g0332800	LOC_Os08g24400	transcription factor	Mediator subunit OsMED14_1 plays an important role in rice development.	OsMED14_1 physically interacts with transcription factors YABBY5, TAPETUM DEGENERATION RETARDATION (TDR) and MADS29, possibly regulating auxin homeostasis and ultimately leading to lateral organ/leaf, microspore and seed development
OsMED14_1	Os08g0332800	LOC_Os08g24400	root	Mediator subunit OsMED14_1 plays an important role in rice development.	To understand the developmental roles of OsMED14_1 in rice, we generated and studied RNAi-based knockdown rice plants that showed multiple effects including less height, narrower leaves and culms with reduced vasculature, lesser lateral root branching, defective microspore development, reduced panicle branching and seed set, and smaller seeds
OsMED14_1	Os08g0332800	LOC_Os08g24400	auxin	Mediator subunit OsMED14_1 plays an important role in rice development.	OsMED14_1 physically interacts with transcription factors YABBY5, TAPETUM DEGENERATION RETARDATION (TDR) and MADS29, possibly regulating auxin homeostasis and ultimately leading to lateral organ/leaf, microspore and seed development
OsMED14_1	Os08g0332800	LOC_Os08g24400	panicle	Mediator subunit OsMED14_1 plays an important role in rice development.	To understand the developmental roles of OsMED14_1 in rice, we generated and studied RNAi-based knockdown rice plants that showed multiple effects including less height, narrower leaves and culms with reduced vasculature, lesser lateral root branching, defective microspore development, reduced panicle branching and seed set, and smaller seeds
OsMED14_1	Os08g0332800	LOC_Os08g24400	development	Mediator subunit OsMED14_1 plays an important role in rice development.	OsMED14_1 physically interacts with transcription factors YABBY5, TAPETUM DEGENERATION RETARDATION (TDR) and MADS29, possibly regulating auxin homeostasis and ultimately leading to lateral organ/leaf, microspore and seed development
OsMED14_1	Os08g0332800	LOC_Os08g24400	seed	Mediator subunit OsMED14_1 plays an important role in rice development.	To understand the developmental roles of OsMED14_1 in rice, we generated and studied RNAi-based knockdown rice plants that showed multiple effects including less height, narrower leaves and culms with reduced vasculature, lesser lateral root branching, defective microspore development, reduced panicle branching and seed set, and smaller seeds
OsMED14_1	Os08g0332800	LOC_Os08g24400	seed	Mediator subunit OsMED14_1 plays an important role in rice development.	OsMED14_1 physically interacts with transcription factors YABBY5, TAPETUM DEGENERATION RETARDATION (TDR) and MADS29, possibly regulating auxin homeostasis and ultimately leading to lateral organ/leaf, microspore and seed development
OsMED14_1	Os08g0332800	LOC_Os08g24400	homeostasis	Mediator subunit OsMED14_1 plays an important role in rice development.	OsMED14_1 physically interacts with transcription factors YABBY5, TAPETUM DEGENERATION RETARDATION (TDR) and MADS29, possibly regulating auxin homeostasis and ultimately leading to lateral organ/leaf, microspore and seed development
OsMED14_1	Os08g0332800	LOC_Os08g24400	branching	Mediator subunit OsMED14_1 plays an important role in rice development.	To understand the developmental roles of OsMED14_1 in rice, we generated and studied RNAi-based knockdown rice plants that showed multiple effects including less height, narrower leaves and culms with reduced vasculature, lesser lateral root branching, defective microspore development, reduced panicle branching and seed set, and smaller seeds
OsMED14_1	Os08g0332800	LOC_Os08g24400	tapetum	Mediator subunit OsMED14_1 plays an important role in rice development.	OsMED14_1 physically interacts with transcription factors YABBY5, TAPETUM DEGENERATION RETARDATION (TDR) and MADS29, possibly regulating auxin homeostasis and ultimately leading to lateral organ/leaf, microspore and seed development
OsMED14_1	Os08g0332800	LOC_Os08g24400	lateral root	Mediator subunit OsMED14_1 plays an important role in rice development.	To understand the developmental roles of OsMED14_1 in rice, we generated and studied RNAi-based knockdown rice plants that showed multiple effects including less height, narrower leaves and culms with reduced vasculature, lesser lateral root branching, defective microspore development, reduced panicle branching and seed set, and smaller seeds
OsMED14_1	Os08g0332800	LOC_Os08g24400	seed development	Mediator subunit OsMED14_1 plays an important role in rice development.	OsMED14_1 physically interacts with transcription factors YABBY5, TAPETUM DEGENERATION RETARDATION (TDR) and MADS29, possibly regulating auxin homeostasis and ultimately leading to lateral organ/leaf, microspore and seed development
OsMED14_1	Os08g0332800	LOC_Os08g24400	microspore	Mediator subunit OsMED14_1 plays an important role in rice development.	To understand the developmental roles of OsMED14_1 in rice, we generated and studied RNAi-based knockdown rice plants that showed multiple effects including less height, narrower leaves and culms with reduced vasculature, lesser lateral root branching, defective microspore development, reduced panicle branching and seed set, and smaller seeds
OsMED14_1	Os08g0332800	LOC_Os08g24400	microspore	Mediator subunit OsMED14_1 plays an important role in rice development.	OsMED14_1 physically interacts with transcription factors YABBY5, TAPETUM DEGENERATION RETARDATION (TDR) and MADS29, possibly regulating auxin homeostasis and ultimately leading to lateral organ/leaf, microspore and seed development
OsMED14_1	Os08g0332800	LOC_Os08g24400	tapetum degeneration	Mediator subunit OsMED14_1 plays an important role in rice development.	OsMED14_1 physically interacts with transcription factors YABBY5, TAPETUM DEGENERATION RETARDATION (TDR) and MADS29, possibly regulating auxin homeostasis and ultimately leading to lateral organ/leaf, microspore and seed development
OsMED25	Os09g0306700	LOC_Os09g13610	architecture	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.
OsMED25	Os09g0306700	LOC_Os09g13610	brassinosteroid	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.
OsMED25	Os09g0306700	LOC_Os09g13610	BR	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.	In addition, the OsMED25-RNAi and osmed25 mutant exhibited decreased BR sensitivity
OsMED25	Os09g0306700	LOC_Os09g13610	BR	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.	Together, these findings revealed that OsMED25 regulates rice BR signaling by interacting with OsBZR1 and modulating the expression of OsBZR1 target genes, thus expanding our understanding of the roles of mediators in plant hormone signaling
OsMED25	Os09g0306700	LOC_Os09g13610	Brassinosteroid	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.
OsMED25	Os09g0306700	LOC_Os09g13610	BR signaling	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.	Together, these findings revealed that OsMED25 regulates rice BR signaling by interacting with OsBZR1 and modulating the expression of OsBZR1 target genes, thus expanding our understanding of the roles of mediators in plant hormone signaling
OsMED25	Os09g0306700	LOC_Os09g13610	erect	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.	Phenotypic analyses showed that the OsMED25-RNAi and osmed25 mutant presented erect leaves, as observed in BR-deficient mutants
OsMED25	Os09g0306700	LOC_Os09g13610	Brassinosteroid Signaling	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.
OsMED25	Os09g0306700	LOC_Os09g13610	plant architecture	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate Brassinosteroid signaling and plant architecture in rice.
OsMED25	Os09g0306700	LOC_Os09g13610	abiotic stress	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice
OsMED25	Os09g0306700	LOC_Os09g13610	abiotic stress	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice	We used virus-induced gene silencing (VIGS) to study the functions of two genes, namely OsMED16 and OsMED25 in response to biotic and abiotic stresses in rice
OsMED25	Os09g0306700	LOC_Os09g13610	biotic stress	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice
OsMED25	Os09g0306700	LOC_Os09g13610	biotic stress	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice	We used virus-induced gene silencing (VIGS) to study the functions of two genes, namely OsMED16 and OsMED25 in response to biotic and abiotic stresses in rice
OsMED25	Os09g0306700	LOC_Os09g13610	leaf	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	Furthermore, the osmed25 mutants retarded JA-regulated leaf senescence under dark-induced senescence
OsMED25	Os09g0306700	LOC_Os09g13610	leaf	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	The results suggest that OsMED25 participates in JA-mediated root development and OsMYC2-mediated leaf senescence in rice
OsMED25	Os09g0306700	LOC_Os09g13610	leaf senescence	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	Furthermore, the osmed25 mutants retarded JA-regulated leaf senescence under dark-induced senescence
OsMED25	Os09g0306700	LOC_Os09g13610	leaf senescence	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	The results suggest that OsMED25 participates in JA-mediated root development and OsMYC2-mediated leaf senescence in rice
OsMED25	Os09g0306700	LOC_Os09g13610	senescence	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	Furthermore, the osmed25 mutants retarded JA-regulated leaf senescence under dark-induced senescence
OsMED25	Os09g0306700	LOC_Os09g13610	senescence	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	The results suggest that OsMED25 participates in JA-mediated root development and OsMYC2-mediated leaf senescence in rice
OsMED25	Os09g0306700	LOC_Os09g13610	root	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	S-type lateral root densities in osmed25 mutants were lower than those in the WT, whereas L-type lateral root densities in osmed25 mutants were higher than those in the WT
OsMED25	Os09g0306700	LOC_Os09g13610	root	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	The results suggest that OsMED25 participates in JA-mediated root development and OsMYC2-mediated leaf senescence in rice
OsMED25	Os09g0306700	LOC_Os09g13610	development	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	The results suggest that OsMED25 participates in JA-mediated root development and OsMYC2-mediated leaf senescence in rice
OsMED25	Os09g0306700	LOC_Os09g13610	ja	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	In the present study, we isolated the loss-of function mutant of MED25, osmed25, through the map-based cloning and phenotypic complementation analysis by the introduction of OsMED25 and investigated the role of OsMED25 in JA signaling in rice
OsMED25	Os09g0306700	LOC_Os09g13610	ja	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	Mutated osmed25 protein could not interact with OsMYC2, which is a positive TF in JA signaling in rice
OsMED25	Os09g0306700	LOC_Os09g13610	ja	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	The expression of JA-responsive senescence-associated genes was not upregulated in response to JA in the osmed25 mutants
OsMED25	Os09g0306700	LOC_Os09g13610	JA	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	In the present study, we isolated the loss-of function mutant of MED25, osmed25, through the map-based cloning and phenotypic complementation analysis by the introduction of OsMED25 and investigated the role of OsMED25 in JA signaling in rice
OsMED25	Os09g0306700	LOC_Os09g13610	JA	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	Mutated osmed25 protein could not interact with OsMYC2, which is a positive TF in JA signaling in rice
OsMED25	Os09g0306700	LOC_Os09g13610	JA	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	The expression of JA-responsive senescence-associated genes was not upregulated in response to JA in the osmed25 mutants
OsMED25	Os09g0306700	LOC_Os09g13610	map-based cloning	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	In the present study, we isolated the loss-of function mutant of MED25, osmed25, through the map-based cloning and phenotypic complementation analysis by the introduction of OsMED25 and investigated the role of OsMED25 in JA signaling in rice
OsMED25	Os09g0306700	LOC_Os09g13610	root development	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	The results suggest that OsMED25 participates in JA-mediated root development and OsMYC2-mediated leaf senescence in rice
OsMED25	Os09g0306700	LOC_Os09g13610	lateral root	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	S-type lateral root densities in osmed25 mutants were lower than those in the WT, whereas L-type lateral root densities in osmed25 mutants were higher than those in the WT
OsMED25	Os09g0306700	LOC_Os09g13610	JA signaling	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	In the present study, we isolated the loss-of function mutant of MED25, osmed25, through the map-based cloning and phenotypic complementation analysis by the introduction of OsMED25 and investigated the role of OsMED25 in JA signaling in rice
OsMED25	Os09g0306700	LOC_Os09g13610	JA signaling	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence	Mutated osmed25 protein could not interact with OsMYC2, which is a positive TF in JA signaling in rice
OsMED4	Os09g0540500	LOC_Os09g36890	plant development	SAD1, an RNA polymerase I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development	SAD1, an RNA polymerase I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development
OsMED4	Os09g0540500	LOC_Os09g36890	development	SAD1, an RNA polymerase I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development	SAD1, an RNA polymerase I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	anther	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	Subtractive screening of cDNA that accumulated in 12 degrees C-treated anthers identified a cDNA clone, OsMEK1, encoding a protein with features characteristic of a mitogen-activated protein (MAP) kinase kinase
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	anther	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	OsMEK1 transcript levels were induced in rice anthers by 12 degrees C treatment for 48 h
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	temperature	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	Taken together, these results lead us to conclude that at least two signaling pathways for low temperature stress exist in rice, and that a MAP kinase pathway with OsMEK1 and OsMAP1 components is possibly involved in the signaling for the higher range low-temperature stress
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	temperature	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	temperature	Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice	Taken together, our data suggest that OsMKK6 and OsMPK3 constitute a moderately low-temperature signalling pathway and regulate cold stress tolerance in rice
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	salt	Overexpression of constitutively active mitogen activated protein kinase kinase 6 enhances tolerance to salt stress in rice	In the present study, a MKK from rice (Oryza sativa), OsMKK6 was functionally characterized in salt stress by transforming its constitutively active form
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	salt	Overexpression of constitutively active mitogen activated protein kinase kinase 6 enhances tolerance to salt stress in rice	CONCLUSION: Present work suggest role of OsMKK6 gene in salt stress signaling in rice
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	seedling	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	Similar OsMEK1 induction was observed in shoots and roots of seedlings that were treated at 12 degrees C for up to 24 h
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	seedling	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	It is interesting that no induction of OsMEK1 transcripts was observed in 4 degrees C-treated seedlings
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	chilling	Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice	Enhanced chilling tolerance was observed in the transgenic plants overexpressing OsMKK6DD
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	chilling	Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice	Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	cold stress	Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice	Taken together, our data suggest that OsMKK6 and OsMPK3 constitute a moderately low-temperature signalling pathway and regulate cold stress tolerance in rice
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	root	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	Similar OsMEK1 induction was observed in shoots and roots of seedlings that were treated at 12 degrees C for up to 24 h
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	salt stress	Overexpression of constitutively active mitogen activated protein kinase kinase 6 enhances tolerance to salt stress in rice	In the present study, a MKK from rice (Oryza sativa), OsMKK6 was functionally characterized in salt stress by transforming its constitutively active form
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	salt stress	Overexpression of constitutively active mitogen activated protein kinase kinase 6 enhances tolerance to salt stress in rice	CONCLUSION: Present work suggest role of OsMKK6 gene in salt stress signaling in rice
OsMEK1|OsMKK6	Os01g0510100	LOC_Os01g32660	shoot	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	Similar OsMEK1 induction was observed in shoots and roots of seedlings that were treated at 12 degrees C for up to 24 h
OsMESL	Os07g0603600	LOC_Os07g41230	resistance	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.
OsMESL	Os07g0603600	LOC_Os07g41230	resistance	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Complementary T-DNA mutants demonstrated a phenotype similar to the wild type (WT), thereby indicating that osmesl confers resistance to pathogens
OsMESL	Os07g0603600	LOC_Os07g41230	resistance	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Overall, these results suggested that osmesl enhances disease resistance to Xoo, R
OsMESL	Os07g0603600	LOC_Os07g41230	disease	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.
OsMESL	Os07g0603600	LOC_Os07g41230	disease	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	The abundance of JA, a hormone associated with disease resistance, was significantly more in osmesl mutants than in WT plants
OsMESL	Os07g0603600	LOC_Os07g41230	disease	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Overall, these results suggested that osmesl enhances disease resistance to Xoo, R
OsMESL	Os07g0603600	LOC_Os07g41230	disease resistance	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.
OsMESL	Os07g0603600	LOC_Os07g41230	disease resistance	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	The abundance of JA, a hormone associated with disease resistance, was significantly more in osmesl mutants than in WT plants
OsMESL	Os07g0603600	LOC_Os07g41230	disease resistance	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Overall, these results suggested that osmesl enhances disease resistance to Xoo, R
OsMESL	Os07g0603600	LOC_Os07g41230	broad-spectrum disease resistance	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.
OsMESL	Os07g0603600	LOC_Os07g41230	reactive oxygen species	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.
OsMESL	Os07g0603600	LOC_Os07g41230	reactive oxygen species	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Protein interaction experiments revealed that OsMESL affects reactive oxygen species (ROS) accumulation by interacting with thioredoxin OsTrxm in rice
OsMet1-1|OsMET1a|OsDMT702	Os03g0798300	LOC_Os03g58400	root	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-1|OsMET1a|OsDMT702	Os03g0798300	LOC_Os03g58400	meristem	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-1|OsMET1a|OsDMT702	Os03g0798300	LOC_Os03g58400	anther	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-1|OsMET1a|OsDMT702	Os03g0798300	LOC_Os03g58400	panicle	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-1|OsMET1a|OsDMT702	Os03g0798300	LOC_Os03g58400	endosperm	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-1|OsMET1a|OsDMT702	Os03g0798300	LOC_Os03g58400	stress	Alterations of Rice ( Oryza sativa L.) DNA Methylation Patterns Associated with Gene Expression in Response to Rice Black Streaked Dwarf Virus	Key genes associated with maintaining DNA methylation in rice were analyzed by RT-qPCR and indicated that OsDMT702 might be responsible for the global increase of DNA methylation level in rice under RBSDV stress
OsMet1-2|OsMET1b	Os07g0182900	LOC_Os07g08500	meristem	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-2|OsMET1b	Os07g0182900	LOC_Os07g08500	anther	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-2|OsMET1b	Os07g0182900	LOC_Os07g08500	panicle	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-2|OsMET1b	Os07g0182900	LOC_Os07g08500	endosperm	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-2|OsMET1b	Os07g0182900	LOC_Os07g08500	root	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	The transcripts of OsMET1b accumulate more abundantly than those of OsMET1a in all of the tissues examined, and both genes actively transcribed at the callus, imbibed embryo, root, meristem, young panicle, anther, pistil, and endosperm, all of which contain actively dividing cells
OsMet1-2|OsMET1b	Os07g0182900	LOC_Os07g08500	methyltransferase	Mutation of a major CG methylase alters genome-wide lncRNA expression in rice	 In this study, we characterized and compared the profiles of genome-wide lncRNA profiles (including long intergenic non-coding RNAs [lincRNAs] and long noncoding natural antisense transcripts [lncNATs]) of a null mutant of the rice DNA methyltransferase 1, OsMET1-2 (designated OsMET1-2-/-) and its isogenic wild type (OsMET1-2+/+)
OsMet1-2|OsMET1b	Os07g0182900	LOC_Os07g08500	methyltransferase	Chromatin architectural alterations due to null mutation of a major CG methylase in rice.	 We constructed a high-resolution Hi-C interaction map for the null OsMET1-2 (the major CG methyltransferase in rice) mutant (osmet1-2) and isogenic wild-type rice (WT)
OsMFS1	Os09g0280600	LOC_Os09g10850	development	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Taken together, our results indicated that OsMFS1 is indispensable to the normal development of anther and embryo sacs in rice
OsMFS1	Os09g0280600	LOC_Os09g10850	pollen	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Here, we characterized a completely sterile Osmfs1 (male and female sterility 1) mutant which has its pollen and embryo sacs both aborted at the reproductive stage due to severe chromosome defection
OsMFS1	Os09g0280600	LOC_Os09g10850	anther	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Taken together, our results indicated that OsMFS1 is indispensable to the normal development of anther and embryo sacs in rice
OsMFS1	Os09g0280600	LOC_Os09g10850	sterility	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Here, we characterized a completely sterile Osmfs1 (male and female sterility 1) mutant which has its pollen and embryo sacs both aborted at the reproductive stage due to severe chromosome defection
OsMFS1	Os09g0280600	LOC_Os09g10850	map-based cloning	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Map-based cloning revealed that the OsMFS1 encodes a meiotic coiled-coil protein, and it is responsible for DSB repairing that acts as an important cofactor to stimulate the single strand invasion
OsMFS1	Os09g0280600	LOC_Os09g10850	reproductive	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Here, we characterized a completely sterile Osmfs1 (male and female sterility 1) mutant which has its pollen and embryo sacs both aborted at the reproductive stage due to severe chromosome defection
OsMFS1	Os09g0280600	LOC_Os09g10850	nucleus	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Subcellular localization analysis of OsMFS1 revealed its association with the nucleus exclusively
OsMFS1	Os09g0280600	LOC_Os09g10850	meiosis	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Expression pattern analyses showed the OsMFS1 was preferentially expressed in meiosis stage
OsMFS1	Os09g0280600	LOC_Os09g10850	sterile	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Here, we characterized a completely sterile Osmfs1 (male and female sterility 1) mutant which has its pollen and embryo sacs both aborted at the reproductive stage due to severe chromosome defection
OsMFS1	Os09g0280600	LOC_Os09g10850	meiotic	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Map-based cloning revealed that the OsMFS1 encodes a meiotic coiled-coil protein, and it is responsible for DSB repairing that acts as an important cofactor to stimulate the single strand invasion
OsMFS1	Os09g0280600	LOC_Os09g10850	male sterility	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	Here, we characterized a completely sterile Osmfs1 (male and female sterility 1) mutant which has its pollen and embryo sacs both aborted at the reproductive stage due to severe chromosome defection
OsMFS1	Os09g0280600	LOC_Os09g10850	homologous recombination	OsMFS1/OsHOP2 Complex Participates in Rice Male and Female Development.	In addition, a yeast two-hybrid (Y2H) and pull-down assay showed that OsMFS1 could physically interact with OsHOP2 protein to form a stable complex to ensure faithful homologous recombination
OsMFT1	Os06g0498800	LOC_Os06g30370	transcription factor	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 In addition, transcription factor OsLFL1 was verified to directly bind to the promoter of OsMFT1 via an RY motif and activate the expression of OsMFT1 in vivo and in vitro
OsMFT1	Os06g0498800	LOC_Os06g30370	panicle	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.
OsMFT1	Os06g0498800	LOC_Os06g30370	panicle	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 Overexpressing OsMFT1 delayed heading date by over 7 d and greatly increased spikelets per panicle and the number of branches
OsMFT1	Os06g0498800	LOC_Os06g30370	panicle	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 In contrast, OsMFT1 knockout mutants had an advanced heading date and reduced spikelets per panicle
OsMFT1	Os06g0498800	LOC_Os06g30370	panicle	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 RNA-seq and RNA in situ hybridization analysis confirmed that OsMFT1 repressed expression of FZP and five SEPALLATA-like genes, indicating that the transition from branch meristem to spikelet meristem was delayed and thus more panicle branches were produced
OsMFT1	Os06g0498800	LOC_Os06g30370	panicle	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 Therefore, OsMFT1 is a suppressor of flowering acting downstream of Ghd7 and upstream of Ehd1, and a positive regulator of panicle architecture
OsMFT1	Os06g0498800	LOC_Os06g30370	spikelet	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 RNA-seq and RNA in situ hybridization analysis confirmed that OsMFT1 repressed expression of FZP and five SEPALLATA-like genes, indicating that the transition from branch meristem to spikelet meristem was delayed and thus more panicle branches were produced
OsMFT1	Os06g0498800	LOC_Os06g30370	meristem	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 RNA-seq and RNA in situ hybridization analysis confirmed that OsMFT1 repressed expression of FZP and five SEPALLATA-like genes, indicating that the transition from branch meristem to spikelet meristem was delayed and thus more panicle branches were produced
OsMFT1	Os06g0498800	LOC_Os06g30370	spikelet meristem	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 RNA-seq and RNA in situ hybridization analysis confirmed that OsMFT1 repressed expression of FZP and five SEPALLATA-like genes, indicating that the transition from branch meristem to spikelet meristem was delayed and thus more panicle branches were produced
OsMFT1	Os06g0498800	LOC_Os06g30370	architecture	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 Therefore, OsMFT1 is a suppressor of flowering acting downstream of Ghd7 and upstream of Ehd1, and a positive regulator of panicle architecture
OsMFT1	Os06g0498800	LOC_Os06g30370	heading date	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.
OsMFT1	Os06g0498800	LOC_Os06g30370	heading date	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 Overexpressing OsMFT1 delayed heading date by over 7 d and greatly increased spikelets per panicle and the number of branches
OsMFT1	Os06g0498800	LOC_Os06g30370	heading date	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 In contrast, OsMFT1 knockout mutants had an advanced heading date and reduced spikelets per panicle
OsMFT1	Os06g0498800	LOC_Os06g30370	panicle architecture	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 Therefore, OsMFT1 is a suppressor of flowering acting downstream of Ghd7 and upstream of Ehd1, and a positive regulator of panicle architecture
OsMFT1	Os06g0498800	LOC_Os06g30370	spikelets per panicle	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.
OsMFT1	Os06g0498800	LOC_Os06g30370	spikelets per panicle	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 Overexpressing OsMFT1 delayed heading date by over 7 d and greatly increased spikelets per panicle and the number of branches
OsMFT1	Os06g0498800	LOC_Os06g30370	spikelets per panicle	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	 In contrast, OsMFT1 knockout mutants had an advanced heading date and reduced spikelets per panicle
OsMFT1	Os06g0498800	LOC_Os06g30370	transcription factor	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	 OsMFT1 was found to interact with two key drought-related transcription factors, OsbZIP66 and OsMYB26, and regulates their binding capacity on drought-related genes, thus enhancing drought tolerance in rice
OsMFT1	Os06g0498800	LOC_Os06g30370	drought	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice
OsMFT1	Os06g0498800	LOC_Os06g30370	drought	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	 OsMFT1 was found to interact with two key drought-related transcription factors, OsbZIP66 and OsMYB26, and regulates their binding capacity on drought-related genes, thus enhancing drought tolerance in rice
OsMFT1	Os06g0498800	LOC_Os06g30370	drought	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	 These results demonstrate that dynamic modulation of drought responsive genes by OsMFT1-OsMYB26 complex and OsMFT1-OsbZIP66 complex is integral to OsFTIP1 effect on impeding nuclear translocation of OsMFT1
OsMFT1	Os06g0498800	LOC_Os06g30370	drought	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	 Our findings suggest that OsMFT1 acts as a hitherto unknown nucleocytoplasmic trafficking signal that regulates drought tolerance in rice in response to environmental signals
OsMFT1	Os06g0498800	LOC_Os06g30370	tolerance	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice
OsMFT1	Os06g0498800	LOC_Os06g30370	tolerance	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	 OsMFT1 was found to interact with two key drought-related transcription factors, OsbZIP66 and OsMYB26, and regulates their binding capacity on drought-related genes, thus enhancing drought tolerance in rice
OsMFT1	Os06g0498800	LOC_Os06g30370	tolerance	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	 Our findings suggest that OsMFT1 acts as a hitherto unknown nucleocytoplasmic trafficking signal that regulates drought tolerance in rice in response to environmental signals
OsMFT1	Os06g0498800	LOC_Os06g30370	drought tolerance	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice
OsMFT1	Os06g0498800	LOC_Os06g30370	drought tolerance	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	 OsMFT1 was found to interact with two key drought-related transcription factors, OsbZIP66 and OsMYB26, and regulates their binding capacity on drought-related genes, thus enhancing drought tolerance in rice
OsMFT1	Os06g0498800	LOC_Os06g30370	drought tolerance	Nuclear Translocation of OsMFT1 That is Impeded by OsFTIP1 Promotes Drought Tolerance in Rice	 Our findings suggest that OsMFT1 acts as a hitherto unknown nucleocytoplasmic trafficking signal that regulates drought tolerance in rice in response to environmental signals
OsMFT1	Os06g0498800	LOC_Os06g30370	stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.
OsMFT1	Os06g0498800	LOC_Os06g30370	stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMFT1	Os06g0498800	LOC_Os06g30370	stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Transcriptome comparisons of osmft1 vs WT in the absence and presence of salt stress yielded several differentially expressed genes, which were associated with salt stress, plant hormone metabolism, and signaling pathways, such as B-BOX ZINC FINGER 6, Oryza sativa bZIP PROTEIN 8, and GIBBERELLIN (GA) 20-oxidase 1
OsMFT1	Os06g0498800	LOC_Os06g30370	stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	seed	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.
OsMFT1	Os06g0498800	LOC_Os06g30370	seed	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMFT1	Os06g0498800	LOC_Os06g30370	seed	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	salt	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.
OsMFT1	Os06g0498800	LOC_Os06g30370	salt	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In this study, we found that seeds of loss-of-function osmft1 mutants germinated faster than wild-type (WT) seeds under salt stress, but this was not the case for loss-of-function osmft2 mutants
OsMFT1	Os06g0498800	LOC_Os06g30370	salt	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMFT1	Os06g0498800	LOC_Os06g30370	salt	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Transcriptome comparisons of osmft1 vs WT in the absence and presence of salt stress yielded several differentially expressed genes, which were associated with salt stress, plant hormone metabolism, and signaling pathways, such as B-BOX ZINC FINGER 6, Oryza sativa bZIP PROTEIN 8, and GIBBERELLIN (GA) 20-oxidase 1
OsMFT1	Os06g0498800	LOC_Os06g30370	salt	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	seed germination	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.
OsMFT1	Os06g0498800	LOC_Os06g30370	seed germination	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMFT1	Os06g0498800	LOC_Os06g30370	seed germination	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	gibberellin	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.
OsMFT1	Os06g0498800	LOC_Os06g30370	gibberellin	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Transcriptome comparisons of osmft1 vs WT in the absence and presence of salt stress yielded several differentially expressed genes, which were associated with salt stress, plant hormone metabolism, and signaling pathways, such as B-BOX ZINC FINGER 6, Oryza sativa bZIP PROTEIN 8, and GIBBERELLIN (GA) 20-oxidase 1
OsMFT1	Os06g0498800	LOC_Os06g30370	ABA	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	salt stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.
OsMFT1	Os06g0498800	LOC_Os06g30370	salt stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In this study, we found that seeds of loss-of-function osmft1 mutants germinated faster than wild-type (WT) seeds under salt stress, but this was not the case for loss-of-function osmft2 mutants
OsMFT1	Os06g0498800	LOC_Os06g30370	salt stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMFT1	Os06g0498800	LOC_Os06g30370	salt stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Transcriptome comparisons of osmft1 vs WT in the absence and presence of salt stress yielded several differentially expressed genes, which were associated with salt stress, plant hormone metabolism, and signaling pathways, such as B-BOX ZINC FINGER 6, Oryza sativa bZIP PROTEIN 8, and GIBBERELLIN (GA) 20-oxidase 1
OsMFT1	Os06g0498800	LOC_Os06g30370	salt stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	zinc	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Transcriptome comparisons of osmft1 vs WT in the absence and presence of salt stress yielded several differentially expressed genes, which were associated with salt stress, plant hormone metabolism, and signaling pathways, such as B-BOX ZINC FINGER 6, Oryza sativa bZIP PROTEIN 8, and GIBBERELLIN (GA) 20-oxidase 1
OsMFT1	Os06g0498800	LOC_Os06g30370	ga	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	 ga 	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	abscisic acid	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.
OsMFT1	Os06g0498800	LOC_Os06g30370	Gibberellin	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.
OsMFT1	Os06g0498800	LOC_Os06g30370	Gibberellin	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Transcriptome comparisons of osmft1 vs WT in the absence and presence of salt stress yielded several differentially expressed genes, which were associated with salt stress, plant hormone metabolism, and signaling pathways, such as B-BOX ZINC FINGER 6, Oryza sativa bZIP PROTEIN 8, and GIBBERELLIN (GA) 20-oxidase 1
OsMFT1	Os06g0498800	LOC_Os06g30370	GA	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	 ABA 	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In addition, the sensitivity of OsMFT1OE seeds to GA and osmft1 seeds to ABA during seed germination increased under salt stress
OsMFT1	Os06g0498800	LOC_Os06g30370	gibberellin biosynthesis	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.
OsMFT2	Os01g0111600	LOC_Os01g02120	transcription factor	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 In vivo and in vitro assays showed that three bZIP transcription factors, OsbZIP23, OsbZIP66 and OsbZIP72, interacted with OsMFT2
OsMFT2	Os01g0111600	LOC_Os01g02120	seedlings	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Exogenous abscisic acid (ABA) treatment on imbibed seeds and seedlings indicated that OsMFT2 altered ABA sensitivity during seed germination and post-germination growth
OsMFT2	Os01g0111600	LOC_Os01g02120	growth	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Exogenous abscisic acid (ABA) treatment on imbibed seeds and seedlings indicated that OsMFT2 altered ABA sensitivity during seed germination and post-germination growth
OsMFT2	Os01g0111600	LOC_Os01g02120	seed	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.
OsMFT2	Os01g0111600	LOC_Os01g02120	seed	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Exogenous abscisic acid (ABA) treatment on imbibed seeds and seedlings indicated that OsMFT2 altered ABA sensitivity during seed germination and post-germination growth
OsMFT2	Os01g0111600	LOC_Os01g02120	seed	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 All these results demonstrated that OsMFT2 positively regulates ABA response genes through interacting with OsbZIP23/66/72 and functions in seed germination
OsMFT2	Os01g0111600	LOC_Os01g02120	seed germination	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.
OsMFT2	Os01g0111600	LOC_Os01g02120	seed germination	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Exogenous abscisic acid (ABA) treatment on imbibed seeds and seedlings indicated that OsMFT2 altered ABA sensitivity during seed germination and post-germination growth
OsMFT2	Os01g0111600	LOC_Os01g02120	seed germination	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 All these results demonstrated that OsMFT2 positively regulates ABA response genes through interacting with OsbZIP23/66/72 and functions in seed germination
OsMFT2	Os01g0111600	LOC_Os01g02120	 ABA 	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.
OsMFT2	Os01g0111600	LOC_Os01g02120	 ABA 	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Exogenous abscisic acid (ABA) treatment on imbibed seeds and seedlings indicated that OsMFT2 altered ABA sensitivity during seed germination and post-germination growth
OsMFT2	Os01g0111600	LOC_Os01g02120	 ABA 	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 OsbZIP23/66/72 bound to the promoter of Rab16A, a typical ABA responsive element containing gene, and OsMFT2 enhanced their binding activities to Rab16A promoter
OsMFT2	Os01g0111600	LOC_Os01g02120	 ABA 	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Moreover, several ABA responsive genes were differentially expressed in the imbibed seeds of OsMFT2 transgenic lines and wild-type
OsMFT2	Os01g0111600	LOC_Os01g02120	 ABA 	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Performance of transgenic plants demonstrated that overexpressing OsbZIP23 rescued the pre-harvest sprouting phenotype and expression decrease of ABA signaling genes caused by OsMFT2 knocking-out
OsMFT2	Os01g0111600	LOC_Os01g02120	 ABA 	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 All these results demonstrated that OsMFT2 positively regulates ABA response genes through interacting with OsbZIP23/66/72 and functions in seed germination
OsMFT2	Os01g0111600	LOC_Os01g02120	abscisic acid	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Exogenous abscisic acid (ABA) treatment on imbibed seeds and seedlings indicated that OsMFT2 altered ABA sensitivity during seed germination and post-germination growth
OsMFT2	Os01g0111600	LOC_Os01g02120	R protein	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Subcellular localization indicated that OsMFT2 was a nuclear protein
OsMFT2	Os01g0111600	LOC_Os01g02120	ABA	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.
OsMFT2	Os01g0111600	LOC_Os01g02120	ABA	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Exogenous abscisic acid (ABA) treatment on imbibed seeds and seedlings indicated that OsMFT2 altered ABA sensitivity during seed germination and post-germination growth
OsMFT2	Os01g0111600	LOC_Os01g02120	ABA	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 OsbZIP23/66/72 bound to the promoter of Rab16A, a typical ABA responsive element containing gene, and OsMFT2 enhanced their binding activities to Rab16A promoter
OsMFT2	Os01g0111600	LOC_Os01g02120	ABA	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Moreover, several ABA responsive genes were differentially expressed in the imbibed seeds of OsMFT2 transgenic lines and wild-type
OsMFT2	Os01g0111600	LOC_Os01g02120	ABA	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 Performance of transgenic plants demonstrated that overexpressing OsbZIP23 rescued the pre-harvest sprouting phenotype and expression decrease of ABA signaling genes caused by OsMFT2 knocking-out
OsMFT2	Os01g0111600	LOC_Os01g02120	ABA	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	 All these results demonstrated that OsMFT2 positively regulates ABA response genes through interacting with OsbZIP23/66/72 and functions in seed germination
OsMFT2	Os01g0111600	LOC_Os01g02120	stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMFT2	Os01g0111600	LOC_Os01g02120	seed	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMFT2	Os01g0111600	LOC_Os01g02120	salt	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In this study, we found that seeds of loss-of-function osmft1 mutants germinated faster than wild-type (WT) seeds under salt stress, but this was not the case for loss-of-function osmft2 mutants
OsMFT2	Os01g0111600	LOC_Os01g02120	salt	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMFT2	Os01g0111600	LOC_Os01g02120	seed germination	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMFT2	Os01g0111600	LOC_Os01g02120	salt stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 In this study, we found that seeds of loss-of-function osmft1 mutants germinated faster than wild-type (WT) seeds under salt stress, but this was not the case for loss-of-function osmft2 mutants
OsMFT2	Os01g0111600	LOC_Os01g02120	salt stress	OsMFT1 inhibits seed germination through modulating abscisic acid signaling and gibberellin biosynthesis under salt stress in rice.	 Overexpression of OsMFT1 (OsMFT1OE) or OsMFT2 increased the sensitivity to salt stress during seed germination
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	cold stress	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses	The accumulation of OsMGD mRNA in both FR13A and IR42 was also increased by ethephon, gibberellin, drought and salt treatment, but cold stress had no effect on the expression of the gene
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	salt	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses	The accumulation of OsMGD mRNA in both FR13A and IR42 was also increased by ethephon, gibberellin, drought and salt treatment, but cold stress had no effect on the expression of the gene
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	photosynthesis	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses	Furthermore, the enhanced expression of OsMGD may relate to photosynthesis, and play an important role during submergence
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	submergence	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses	Time-course studies showed that the expression of OsMGD in the rice cultivars FR13A and IR42 (submergence-susceptive cultivar) during submergence was gradually increased and that expression in FR13A was higher than in IR42
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	submergence	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses	Furthermore, the enhanced expression of OsMGD may relate to photosynthesis, and play an important role during submergence
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	drought	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses	The accumulation of OsMGD mRNA in both FR13A and IR42 was also increased by ethephon, gibberellin, drought and salt treatment, but cold stress had no effect on the expression of the gene
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	gibberellin	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses	The accumulation of OsMGD mRNA in both FR13A and IR42 was also increased by ethephon, gibberellin, drought and salt treatment, but cold stress had no effect on the expression of the gene
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	gibberellin	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses	These results suggest that the expression of OsMGD mRNA requires benzyladenine or illumination, and that the process is also mediated by ethephon and gibberellin
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	leaf	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	The leaf of osmgd2 mutants showed reduced MGDG (∼11
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	growth	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Put together, the present study demonstrated that OsMGD2 is the predominantly expressed gene encoding MGDG synthase in anther and grain and plays important roles in plant growth and development, as well as in grain quality
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	flower	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Although subcellular localization analysis demonstrated that OsMGD2 is localized to chloroplast, its expression was observed mainly in anther and endosperm, suggesting that MGDG might have an important role in the development of flower and grain in rice
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	grain	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Although subcellular localization analysis demonstrated that OsMGD2 is localized to chloroplast, its expression was observed mainly in anther and endosperm, suggesting that MGDG might have an important role in the development of flower and grain in rice
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	grain	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Knock-out mutants of OsMGD2 were generated employing the CRISPR/Cas9 system and their morphology, yield and grain quality related traits were studied
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	grain	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Put together, the present study demonstrated that OsMGD2 is the predominantly expressed gene encoding MGDG synthase in anther and grain and plays important roles in plant growth and development, as well as in grain quality
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	anther	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Although subcellular localization analysis demonstrated that OsMGD2 is localized to chloroplast, its expression was observed mainly in anther and endosperm, suggesting that MGDG might have an important role in the development of flower and grain in rice
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	anther	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Put together, the present study demonstrated that OsMGD2 is the predominantly expressed gene encoding MGDG synthase in anther and grain and plays important roles in plant growth and development, as well as in grain quality
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	development	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Although subcellular localization analysis demonstrated that OsMGD2 is localized to chloroplast, its expression was observed mainly in anther and endosperm, suggesting that MGDG might have an important role in the development of flower and grain in rice
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	yield	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Knock-out mutants of OsMGD2 were generated employing the CRISPR/Cas9 system and their morphology, yield and grain quality related traits were studied
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	plant growth	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Put together, the present study demonstrated that OsMGD2 is the predominantly expressed gene encoding MGDG synthase in anther and grain and plays important roles in plant growth and development, as well as in grain quality
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	quality	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Knock-out mutants of OsMGD2 were generated employing the CRISPR/Cas9 system and their morphology, yield and grain quality related traits were studied
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	quality	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Put together, the present study demonstrated that OsMGD2 is the predominantly expressed gene encoding MGDG synthase in anther and grain and plays important roles in plant growth and development, as well as in grain quality
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	grain quality	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Knock-out mutants of OsMGD2 were generated employing the CRISPR/Cas9 system and their morphology, yield and grain quality related traits were studied
OsMGD|OsMGD2	Os02g0802700	LOC_Os02g55910	grain quality	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene OsMGD2 in Rice.	Put together, the present study demonstrated that OsMGD2 is the predominantly expressed gene encoding MGDG synthase in anther and grain and plays important roles in plant growth and development, as well as in grain quality
OsMGD3	Os08g0299400	LOC_Os08g20420	transcription factor	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 We showed that plant phosphate (Pi) status and transcription factor OsPHR2 are involved in the transcriptional regulation of OsMGD3
OsMGD3	Os08g0299400	LOC_Os08g20420	root	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Further, OsMGD3 showed a predominant role in roots, altering lateral root growth
OsMGD3	Os08g0299400	LOC_Os08g20420	growth	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Further, OsMGD3 showed a predominant role in roots, altering lateral root growth
OsMGD3	Os08g0299400	LOC_Os08g20420	lateral root	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Further, OsMGD3 showed a predominant role in roots, altering lateral root growth
OsMGD3	Os08g0299400	LOC_Os08g20420	root growth	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Further, OsMGD3 showed a predominant role in roots, altering lateral root growth
OsMGD3	Os08g0299400	LOC_Os08g20420	phosphate	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 We showed that plant phosphate (Pi) status and transcription factor OsPHR2 are involved in the transcriptional regulation of OsMGD3
OsMGD3	Os08g0299400	LOC_Os08g20420	Pi	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 CRISPR/Cas9 knockout (KO) and overexpression (OE) lines of OsMGD3 were generated to explore its potential role in rice adaptation to Pi deficiency
OsMGD3	Os08g0299400	LOC_Os08g20420	Pi	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Compared to WT, OsMGD3 KO lines displayed a reduction while OE lines showed an enhanced, Pi acquisition and utilization
OsMGD3	Os08g0299400	LOC_Os08g20420	Pi	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Our comprehensive lipidomic analysis revealed the role of OsMGD3 in membrane lipid remodeling in addition to a role in regulating diacylglycerol and phosphatidic acid levels that affected the expression of Pi transporters
OsMGD3	Os08g0299400	LOC_Os08g20420	pi	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 CRISPR/Cas9 knockout (KO) and overexpression (OE) lines of OsMGD3 were generated to explore its potential role in rice adaptation to Pi deficiency
OsMGD3	Os08g0299400	LOC_Os08g20420	pi	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Compared to WT, OsMGD3 KO lines displayed a reduction while OE lines showed an enhanced, Pi acquisition and utilization
OsMGD3	Os08g0299400	LOC_Os08g20420	pi	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Our comprehensive lipidomic analysis revealed the role of OsMGD3 in membrane lipid remodeling in addition to a role in regulating diacylglycerol and phosphatidic acid levels that affected the expression of Pi transporters
OsMGD3	Os08g0299400	LOC_Os08g20420	 pi 	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 CRISPR/Cas9 knockout (KO) and overexpression (OE) lines of OsMGD3 were generated to explore its potential role in rice adaptation to Pi deficiency
OsMGD3	Os08g0299400	LOC_Os08g20420	 pi 	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Compared to WT, OsMGD3 KO lines displayed a reduction while OE lines showed an enhanced, Pi acquisition and utilization
OsMGD3	Os08g0299400	LOC_Os08g20420	 pi 	Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice.	 Our comprehensive lipidomic analysis revealed the role of OsMGD3 in membrane lipid remodeling in addition to a role in regulating diacylglycerol and phosphatidic acid levels that affected the expression of Pi transporters
OsMGT1	Os01g0869200	LOC_Os01g64890	aluminum	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice
OsMGT1	Os01g0869200	LOC_Os01g64890	transporter	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	When a putative rice (Oryza sativa) Mg transporter gene, Oryza sativa MAGNESIUM TRANSPORTER1 (OsMGT1), was knocked out, the tolerance to Al, but not to cadmium and lanthanum, was decreased
OsMGT1	Os01g0869200	LOC_Os01g64890	transporter	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	Taken together, our results indicate that OsMGT1 is a transporter for Mg uptake in the roots and that up-regulation of this gene is required for conferring Al tolerance in rice by increasing Mg concentration in the cell
OsMGT1	Os01g0869200	LOC_Os01g64890	transporter	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice
OsMGT1	Os01g0869200	LOC_Os01g64890	Al tolerance	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	Taken together, our results indicate that OsMGT1 is a transporter for Mg uptake in the roots and that up-regulation of this gene is required for conferring Al tolerance in rice by increasing Mg concentration in the cell
OsMGT1	Os01g0869200	LOC_Os01g64890	magnesium	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	When a putative rice (Oryza sativa) Mg transporter gene, Oryza sativa MAGNESIUM TRANSPORTER1 (OsMGT1), was knocked out, the tolerance to Al, but not to cadmium and lanthanum, was decreased
OsMGT1	Os01g0869200	LOC_Os01g64890	magnesium	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice
OsMGT1	Os01g0869200	LOC_Os01g64890	cadmium	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	When a putative rice (Oryza sativa) Mg transporter gene, Oryza sativa MAGNESIUM TRANSPORTER1 (OsMGT1), was knocked out, the tolerance to Al, but not to cadmium and lanthanum, was decreased
OsMGT1	Os01g0869200	LOC_Os01g64890	root	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	OsMGT1 was expressed in both the roots and shoots in the absence of Al, but the expression only in the roots was rapidly up-regulated by Al
OsMGT1	Os01g0869200	LOC_Os01g64890	root	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	Taken together, our results indicate that OsMGT1 is a transporter for Mg uptake in the roots and that up-regulation of this gene is required for conferring Al tolerance in rice by increasing Mg concentration in the cell
OsMGT1	Os01g0869200	LOC_Os01g64890	shoot	Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice	OsMGT1 was expressed in both the roots and shoots in the absence of Al, but the expression only in the roots was rapidly up-regulated by Al
OsMGT1	Os01g0869200	LOC_Os01g64890	leaf	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	OsMGT1 was also expressed in the phloem region of basal node, leaf blade and sheath
OsMGT1	Os01g0869200	LOC_Os01g64890	xylem	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Here, we show evidence that a rice Mg transporter OsMGT1 is required for the salt-tolerance probably by regulating transport activity of OsHKT1;5, a key transporter for the removal of Na+ from the xylem sap at the root mature zone
OsMGT1	Os01g0869200	LOC_Os01g64890	xylem	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Knockout of OsMGT1 did not affect total Na uptake, but increased Na concentration in the shoots and xylem sap, resulting in a significant increase in salt sensitivity at low external Mg2+ concentration (20-200 μM)
OsMGT1	Os01g0869200	LOC_Os01g64890	root	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Here, we show evidence that a rice Mg transporter OsMGT1 is required for the salt-tolerance probably by regulating transport activity of OsHKT1;5, a key transporter for the removal of Na+ from the xylem sap at the root mature zone
OsMGT1	Os01g0869200	LOC_Os01g64890	root	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Spatial expression analysis revealed that OsMGT1 was expressed in all root cells of the root tips, but was highly expressed in the pericycle of root mature zone
OsMGT1	Os01g0869200	LOC_Os01g64890	root	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Taken together, our results suggest that Mg2+ transported by OsMGT1 in the root mature zone is required for enhancing OsHKT1;5 activity, thereby restricting Na accumulation to the shoots
OsMGT1	Os01g0869200	LOC_Os01g64890	sheath	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	OsMGT1 was also expressed in the phloem region of basal node, leaf blade and sheath
OsMGT1	Os01g0869200	LOC_Os01g64890	salt	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.
OsMGT1	Os01g0869200	LOC_Os01g64890	salt	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Knockout of OsMGT1 did not affect total Na uptake, but increased Na concentration in the shoots and xylem sap, resulting in a significant increase in salt sensitivity at low external Mg2+ concentration (20-200 μM)
OsMGT1	Os01g0869200	LOC_Os01g64890	salt	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	OsMGT1 was expressed in both the roots and shoots, but only that in the roots was moderately up-regulated by salt stress
OsMGT1	Os01g0869200	LOC_Os01g64890	salt	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Furthermore, knockout of OsHKT1;5 in osmgt1 mutant background did not further increase its salt sensitivity
OsMGT1	Os01g0869200	LOC_Os01g64890	tolerance	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.
OsMGT1	Os01g0869200	LOC_Os01g64890	salt tolerance	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.
OsMGT1	Os01g0869200	LOC_Os01g64890	salt stress	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	OsMGT1 was expressed in both the roots and shoots, but only that in the roots was moderately up-regulated by salt stress
OsMGT1	Os01g0869200	LOC_Os01g64890	stress	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	OsMGT1 was expressed in both the roots and shoots, but only that in the roots was moderately up-regulated by salt stress
OsMGT1	Os01g0869200	LOC_Os01g64890	transporter	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.
OsMGT1	Os01g0869200	LOC_Os01g64890	transporter	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Here, we show evidence that a rice Mg transporter OsMGT1 is required for the salt-tolerance probably by regulating transport activity of OsHKT1;5, a key transporter for the removal of Na+ from the xylem sap at the root mature zone
OsMGT1	Os01g0869200	LOC_Os01g64890	phloem	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	OsMGT1 was also expressed in the phloem region of basal node, leaf blade and sheath
OsMGT1	Os01g0869200	LOC_Os01g64890	magnesium	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.
OsMGT1	Os01g0869200	LOC_Os01g64890	Salt Sensitivity	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Knockout of OsMGT1 did not affect total Na uptake, but increased Na concentration in the shoots and xylem sap, resulting in a significant increase in salt sensitivity at low external Mg2+ concentration (20-200 μM)
OsMGT1	Os01g0869200	LOC_Os01g64890	Salt Sensitivity	A magnesium transporter OsMGT1 plays a critical role in salt tolerance in rice.	Furthermore, knockout of OsHKT1;5 in osmgt1 mutant background did not further increase its salt sensitivity
OsMGT1	Os01g0869200	LOC_Os01g64890	xylem	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	Investigation of tissue expression patterns revealed that OsMGT1 was mainly expressed in the phloem region; however, Mg deficiency remarkably enhanced its expression in xylem parenchyma and mesophyll cells in shoots
OsMGT1	Os01g0869200	LOC_Os01g64890	resistance	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.
OsMGT1	Os01g0869200	LOC_Os01g64890	resistance	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	In this study, we identified a Mg transporter gene OsMGT1 that confers resistance to Mg deficiency in rice (Oryza sativa)
OsMGT1	Os01g0869200	LOC_Os01g64890	resistance	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	In conclusion, our results indicate that OsMGT1 plays an important role in rice Mg import and is required for the resistance to Mg deficiency, which can be utilized for molecular breeding of low-Mg tolerant plants
OsMGT1	Os01g0869200	LOC_Os01g64890	biomass	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	Knockout of OsMGT1 resulted in a significant reduction in Mg content and biomass when grown at Mg-limited conditions
OsMGT1	Os01g0869200	LOC_Os01g64890	biomass	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	In addition, overexpression of OsMGT1 increased Mg content and biomass under low-Mg supply
OsMGT1	Os01g0869200	LOC_Os01g64890	transporter	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	In this study, we identified a Mg transporter gene OsMGT1 that confers resistance to Mg deficiency in rice (Oryza sativa)
OsMGT1	Os01g0869200	LOC_Os01g64890	phloem	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	Investigation of tissue expression patterns revealed that OsMGT1 was mainly expressed in the phloem region; however, Mg deficiency remarkably enhanced its expression in xylem parenchyma and mesophyll cells in shoots
OsMGT1	Os01g0869200	LOC_Os01g64890	breeding	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	In conclusion, our results indicate that OsMGT1 plays an important role in rice Mg import and is required for the resistance to Mg deficiency, which can be utilized for molecular breeding of low-Mg tolerant plants
OsMGT1	Os01g0869200	LOC_Os01g64890	xylem parenchyma	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	Investigation of tissue expression patterns revealed that OsMGT1 was mainly expressed in the phloem region; however, Mg deficiency remarkably enhanced its expression in xylem parenchyma and mesophyll cells in shoots
OsMGT1	Os01g0869200	LOC_Os01g64890	magnesium	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.
OsMGT3	Os03g0684400	LOC_Os03g48000	growth	Diel magnesium fluctuations in chloroplasts contribute to photosynthesis in rice	In addition, the mesophyll-specific overexpression of OsMGT3 remarkably improved photosynthetic efficiency and growth performance in rice
OsMIOX	Os06g0561000	LOC_Os06g36560	drought	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	OsMIOX was expressed predominantly in the roots and induced by drought, H(2)O(2), salt, cold and abscisic acid
OsMIOX	Os06g0561000	LOC_Os06g36560	drought	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	Together, these data suggest that OsMIOX has a specific function in drought stress tolerance by decreasing oxidative damage
OsMIOX	Os06g0561000	LOC_Os06g36560	drought	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)
OsMIOX	Os06g0561000	LOC_Os06g36560	root	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	OsMIOX was expressed predominantly in the roots and induced by drought, H(2)O(2), salt, cold and abscisic acid
OsMIOX	Os06g0561000	LOC_Os06g36560	salt	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	OsMIOX was expressed predominantly in the roots and induced by drought, H(2)O(2), salt, cold and abscisic acid
OsMIOX	Os06g0561000	LOC_Os06g36560	oxidative	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	Together, these data suggest that OsMIOX has a specific function in drought stress tolerance by decreasing oxidative damage
OsMIOX	Os06g0561000	LOC_Os06g36560	growth	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	The transgenic rice lines overexpressing OsMIOX showed obviously improved growth performance in the medium containing 200 mM mannitol
OsMIOX	Os06g0561000	LOC_Os06g36560	drought tolerance	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	OsMIOX, a myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)
OsmiR167a	None	None	auxin	OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice.	Our results reveal that OsmiR167a represses its targets, OsARF12, OsARF17 and OsARF25, to control rice tiller angle by fine-tuning auxin asymmetric distribution in shoots
OsmiR167a	None	None	tiller	OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice.	In the overexpression of OsMIR167a plants, the expression of OsARF12, OsARF17 and OsARF25 were severely repressed, and displayed larger tiller angle as well as the osarf12/osarf17 and osarf12/ osarf25 plants
OsmiR167a	None	None	tiller	OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice.	Our results reveal that OsmiR167a represses its targets, OsARF12, OsARF17 and OsARF25, to control rice tiller angle by fine-tuning auxin asymmetric distribution in shoots
OsmiR167a	None	None	tiller angle	OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice.	In the overexpression of OsMIR167a plants, the expression of OsARF12, OsARF17 and OsARF25 were severely repressed, and displayed larger tiller angle as well as the osarf12/osarf17 and osarf12/ osarf25 plants
OsmiR167a	None	None	tiller angle	OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice.	Our results reveal that OsmiR167a represses its targets, OsARF12, OsARF17 and OsARF25, to control rice tiller angle by fine-tuning auxin asymmetric distribution in shoots
OsMIR168a	None	None	seedling	CRISPR-Cas9 mediated OsMIR168a knockout reveals its pleiotropy in rice.	The rice OsMIR168a mutants grew rapidly at the seedling stage, produced more tillers, and matured early
OsMIR168a	None	None	transcriptional regulator	CRISPR-Cas9 mediated OsMIR168a knockout reveals its pleiotropy in rice.	Many protein-coding genes and miRNAs showed differential expression in the OsMIR168a mutants, suggesting OsMIR168a exerts a major transcriptional regulatory role, likely through its potential target genes such as OsAGO1s and OsAGO18
OsmiR396	None	None	stem	SLENDER RICE1 and Oryza sativa INDETERMINATE DOMAIN2 Regulating OsmiR396 Is Involved in Stem Elongation.	SLENDER RICE1 and Oryza sativa INDETERMINATE DOMAIN2 Regulating OsmiR396 Is Involved in Stem Elongation.
OsmiR396	None	None	growth	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	The grain shape of Growth Regulating Factor8 (OsGRF8)-overexpressing transgenic plants was most similar to that of MIM396 plants, suggesting OsGRF8 is a major mediator of OsmiR396 in grain size regulation
OsmiR396	None	None	panicle	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	Here we show that sequestering OsmiR396 through target mimicry (MIM396) can substantially increase grain size in several japonica and indica rice subspecies and in plants with excessive tillers and a high panicle density
OsmiR396	None	None	grain	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	Here we show that sequestering OsmiR396 through target mimicry (MIM396) can substantially increase grain size in several japonica and indica rice subspecies and in plants with excessive tillers and a high panicle density
OsmiR396	None	None	grain	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	Thus, OsmiR396 has a major role related to the regulation of rice grain size
OsmiR396	None	None	grain	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	The grain shape of Growth Regulating Factor8 (OsGRF8)-overexpressing transgenic plants was most similar to that of MIM396 plants, suggesting OsGRF8 is a major mediator of OsmiR396 in grain size regulation
OsmiR396	None	None	grain	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	Our findings suggest that genetic regulatory networks comprising various miRNAs, such as OsmiR396 and OsmiR408, may be crucial for controlling rice grain size
OsmiR396	None	None	grain size	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	Here we show that sequestering OsmiR396 through target mimicry (MIM396) can substantially increase grain size in several japonica and indica rice subspecies and in plants with excessive tillers and a high panicle density
OsmiR396	None	None	grain size	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	Thus, OsmiR396 has a major role related to the regulation of rice grain size
OsmiR396	None	None	grain size	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	The grain shape of Growth Regulating Factor8 (OsGRF8)-overexpressing transgenic plants was most similar to that of MIM396 plants, suggesting OsGRF8 is a major mediator of OsmiR396 in grain size regulation
OsmiR396	None	None	grain size	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	Our findings suggest that genetic regulatory networks comprising various miRNAs, such as OsmiR396 and OsmiR408, may be crucial for controlling rice grain size
OsmiR396	None	None	grain shape	OsmiR396/Growth Regulating Factor modulate rice grain size through direct regulation of embryo-specific miR408	The grain shape of Growth Regulating Factor8 (OsGRF8)-overexpressing transgenic plants was most similar to that of MIM396 plants, suggesting OsGRF8 is a major mediator of OsmiR396 in grain size regulation
OsmiR528	None	None	transcription factor	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.
OsmiR528	None	None	transcription factor	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	To investigate the potential mechanism of OsmiR528 in increasing cold stress tolerance, we examined expression of stress-associated MYB transcription factors OsGAMYB-like1, OsMYBS3, OsMYB4, OsMYB3R-2, OsMYB5, OsMYB59, OsMYB30, OsMYB1R, and OsMYB20 in rice cells by qRT-PCR
OsmiR528	None	None	transcription factor	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	Our experiments demonstrated that OsmiR528 decreases expression of transcription factor OsMYB30 by targeting a F-box domain containing protein gene (Os06g06050), which is a positive regulator of OsMYB30
OsmiR528	None	None	transcription factor	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	The transcript levels of the OsBMY2, OsBMY6, and OsBMY10 were elevated by OsMYB30 knockdown, but decreased by Os-MYB30 overexpression in OsmiR528 transgenic cell lines, suggesting that OsmiR528 increases low temperature tolerance by modulating expression of stress response-related transcription factor
OsmiR528	None	None	temperature	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	The transcript levels of the OsBMY2, OsBMY6, and OsBMY10 were elevated by OsMYB30 knockdown, but decreased by Os-MYB30 overexpression in OsmiR528 transgenic cell lines, suggesting that OsmiR528 increases low temperature tolerance by modulating expression of stress response-related transcription factor
OsmiR528	None	None	tolerance	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.
OsmiR528	None	None	tolerance	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	The transcript levels of the OsBMY2, OsBMY6, and OsBMY10 were elevated by OsMYB30 knockdown, but decreased by Os-MYB30 overexpression in OsmiR528 transgenic cell lines, suggesting that OsmiR528 increases low temperature tolerance by modulating expression of stress response-related transcription factor
OsmiR528	None	None	cold stress	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.
OsmiR528	None	None	cold stress	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	To investigate the potential mechanism of OsmiR528 in increasing cold stress tolerance, we examined expression of stress-associated MYB transcription factors OsGAMYB-like1, OsMYBS3, OsMYB4, OsMYB3R-2, OsMYB5, OsMYB59, OsMYB30, OsMYB1R, and OsMYB20 in rice cells by qRT-PCR
OsmiR528	None	None	stress	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.
OsmiR528	None	None	stress	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	To investigate the potential mechanism of OsmiR528 in increasing cold stress tolerance, we examined expression of stress-associated MYB transcription factors OsGAMYB-like1, OsMYBS3, OsMYB4, OsMYB3R-2, OsMYB5, OsMYB59, OsMYB30, OsMYB1R, and OsMYB20 in rice cells by qRT-PCR
OsmiR528	None	None	stress	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	The transcript levels of the OsBMY2, OsBMY6, and OsBMY10 were elevated by OsMYB30 knockdown, but decreased by Os-MYB30 overexpression in OsmiR528 transgenic cell lines, suggesting that OsmiR528 increases low temperature tolerance by modulating expression of stress response-related transcription factor
OsmiR528	None	None	stress response	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.
OsmiR528	None	None	stress response	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	The transcript levels of the OsBMY2, OsBMY6, and OsBMY10 were elevated by OsMYB30 knockdown, but decreased by Os-MYB30 overexpression in OsmiR528 transgenic cell lines, suggesting that OsmiR528 increases low temperature tolerance by modulating expression of stress response-related transcription factor
OsmiR528	None	None	stress tolerance	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.
OsmiR528	None	None	stress tolerance	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of Stress Response-related Transcription Factor Genes in Plant Cells.	To investigate the potential mechanism of OsmiR528 in increasing cold stress tolerance, we examined expression of stress-associated MYB transcription factors OsGAMYB-like1, OsMYBS3, OsMYB4, OsMYB3R-2, OsMYB5, OsMYB59, OsMYB30, OsMYB1R, and OsMYB20 in rice cells by qRT-PCR
OsmiR528	None	None	pollen	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsmiR528	None	None	pollen	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We propose a model in which OsmiR528 regulates pollen intine formation by directly targeting OsUCL23 and in which OsUCL23 interacts with the POT protein on the PVCs and MVBs to regulate the production of metabolites during pollen development
OsmiR528	None	None	pollen	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	The study thus reveals the functions of OsmiR528 and an uclacyanin during pollen development
OsmiR528	None	None	development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsmiR528	None	None	development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We propose a model in which OsmiR528 regulates pollen intine formation by directly targeting OsUCL23 and in which OsUCL23 interacts with the POT protein on the PVCs and MVBs to regulate the production of metabolites during pollen development
OsmiR528	None	None	development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	The study thus reveals the functions of OsmiR528 and an uclacyanin during pollen development
OsmiR528	None	None	R protein	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsmiR528	None	None	copper	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsmiR528	None	None	pollen development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsmiR528	None	None	pollen development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We propose a model in which OsmiR528 regulates pollen intine formation by directly targeting OsUCL23 and in which OsUCL23 interacts with the POT protein on the PVCs and MVBs to regulate the production of metabolites during pollen development
OsmiR528	None	None	pollen development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	The study thus reveals the functions of OsmiR528 and an uclacyanin during pollen development
OsmiR530	None	None	panicle	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	Blocking OsmiR530 increases grain yield, whereas OsmiR530 overexpression significantly decreases grain size and panicle branching, leading to yield loss
OsmiR530	None	None	grain	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.
OsmiR530	None	None	grain	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	We determined that OsmiR530 negatively regulates grain yield
OsmiR530	None	None	grain	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	Blocking OsmiR530 increases grain yield, whereas OsmiR530 overexpression significantly decreases grain size and panicle branching, leading to yield loss
OsmiR530	None	None	grain yield	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.
OsmiR530	None	None	grain yield	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	We determined that OsmiR530 negatively regulates grain yield
OsmiR530	None	None	grain yield	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	Blocking OsmiR530 increases grain yield, whereas OsmiR530 overexpression significantly decreases grain size and panicle branching, leading to yield loss
OsmiR530	None	None	yield	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.
OsmiR530	None	None	yield	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	We determined that OsmiR530 negatively regulates grain yield
OsmiR530	None	None	yield	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	Blocking OsmiR530 increases grain yield, whereas OsmiR530 overexpression significantly decreases grain size and panicle branching, leading to yield loss
OsmiR530	None	None	grain size	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	Blocking OsmiR530 increases grain yield, whereas OsmiR530 overexpression significantly decreases grain size and panicle branching, leading to yield loss
OsmiR530	None	None	breeding	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	Analyses of genetic variations suggested that the OsMIR530 locus has likely been subjected to artificial selection during rice breeding
OsmiR535	None	None	panicle	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.
OsmiR535	None	None	panicle	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Furthermore, OsmiR535 overexpression imposed great influence in panicle architecture, such as more but shorter panicles, and fewer primary/secondary panicle branches
OsmiR535	None	None	panicle	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Through quantitative real-time PCR analyses, we further revealed that OsmiR535 overexpression repressed the expression of OsSPL7/12/16, as well as the OsSPLs downstream panicle related genes, including OsPIN1B, OsDEP1, OsLOG and OsSLR1
OsmiR535	None	None	panicle	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Taken together, our findings suggest that OsmiR535 multiply modulates plant height, panicle architecture and grain shape possibly by regulating OsSPLs genes in rice
OsmiR535	None	None	grain	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.
OsmiR535	None	None	grain	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Moreover, OsmiR535 overexpression increased the grain length, but did not affect grain width
OsmiR535	None	None	grain	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Taken together, our findings suggest that OsmiR535 multiply modulates plant height, panicle architecture and grain shape possibly by regulating OsSPLs genes in rice
OsmiR535	None	None	grain length	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Moreover, OsmiR535 overexpression increased the grain length, but did not affect grain width
OsmiR535	None	None	architecture	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Taken together, our findings suggest that OsmiR535 multiply modulates plant height, panicle architecture and grain shape possibly by regulating OsSPLs genes in rice
OsmiR535	None	None	branching	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.
OsmiR535	None	None	height	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Expectedly, OsmiR535 overexpression in rice reduced plant height by decreasing the 1st and 2nd internode length
OsmiR535	None	None	plant height	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.
OsmiR535	None	None	plant height	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Expectedly, OsmiR535 overexpression in rice reduced plant height by decreasing the 1st and 2nd internode length
OsmiR535	None	None	plant height	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Taken together, our findings suggest that OsmiR535 multiply modulates plant height, panicle architecture and grain shape possibly by regulating OsSPLs genes in rice
OsmiR535	None	None	internode length	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Expectedly, OsmiR535 overexpression in rice reduced plant height by decreasing the 1st and 2nd internode length
OsmiR535	None	None	panicle architecture	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Furthermore, OsmiR535 overexpression imposed great influence in panicle architecture, such as more but shorter panicles, and fewer primary/secondary panicle branches
OsmiR535	None	None	panicle architecture	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Taken together, our findings suggest that OsmiR535 multiply modulates plant height, panicle architecture and grain shape possibly by regulating OsSPLs genes in rice
OsmiR535	None	None	grain width	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Moreover, OsmiR535 overexpression increased the grain length, but did not affect grain width
OsmiR535	None	None	seedlings	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	In addition, the overexpression of OsmiR535 significantly reduced the survival rate of rice seedlings during PEG and dehydration post-stress recovery
OsmiR535	None	None	plant development	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	OsmiR535 is involved in regulating the cold-stress response, modulating plant development, and determining panicle architecture and grain length
OsmiR535	None	None	panicle	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	OsmiR535 is involved in regulating the cold-stress response, modulating plant development, and determining panicle architecture and grain length
OsmiR535	None	None	grain	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	OsmiR535 is involved in regulating the cold-stress response, modulating plant development, and determining panicle architecture and grain length
OsmiR535	None	None	grain length	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	OsmiR535 is involved in regulating the cold-stress response, modulating plant development, and determining panicle architecture and grain length
OsmiR535	None	None	drought	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	However, the role that OsmiR535 plays in plant responses to drought and salinity are elusive
OsmiR535	None	None	drought	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	Moreover, our practical application of CRISPR/Cas9 mediated genome editing created a homozygous 5 bp deletion in the coding sequence of OsmiR535, demonstrating that OsmiR535 could be a useful genetic editing target for drought and salinity tolerance and a new marker for molecular breeding of Oryza sativa
OsmiR535	None	None	salinity	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	However, the role that OsmiR535 plays in plant responses to drought and salinity are elusive
OsmiR535	None	None	salinity	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	Moreover, our practical application of CRISPR/Cas9 mediated genome editing created a homozygous 5 bp deletion in the coding sequence of OsmiR535, demonstrating that OsmiR535 could be a useful genetic editing target for drought and salinity tolerance and a new marker for molecular breeding of Oryza sativa
OsmiR535	None	None	tolerance	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	With transgenic and CRISPR/Cas9 knockout system techniques, our results verified that either inhibition or knockout of OsmiR535 in rice could enhance the tolerance of plants to NaCl, ABA, dehydration and PEG stresses
OsmiR535	None	None	tolerance	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	Moreover, our practical application of CRISPR/Cas9 mediated genome editing created a homozygous 5 bp deletion in the coding sequence of OsmiR535, demonstrating that OsmiR535 could be a useful genetic editing target for drought and salinity tolerance and a new marker for molecular breeding of Oryza sativa
OsmiR535	None	None	ethylene	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	In the current study, molecular and genetic engineering techniques were used to elucidate the possible role of OsmiR535 in response to NaCl, PEG(Poly ethylene glycol), ABA(Abscisic acid), and dehydration stresses
OsmiR535	None	None	stress	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	Our results demonstrated that OsmiR535 negatively regulates the stress response in rice
OsmiR535	None	None	architecture	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	OsmiR535 is involved in regulating the cold-stress response, modulating plant development, and determining panicle architecture and grain length
OsmiR535	None	None	breeding	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	Moreover, our practical application of CRISPR/Cas9 mediated genome editing created a homozygous 5 bp deletion in the coding sequence of OsmiR535, demonstrating that OsmiR535 could be a useful genetic editing target for drought and salinity tolerance and a new marker for molecular breeding of Oryza sativa
OsmiR535	None	None	abscisic acid	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	In the current study, molecular and genetic engineering techniques were used to elucidate the possible role of OsmiR535 in response to NaCl, PEG(Poly ethylene glycol), ABA(Abscisic acid), and dehydration stresses
OsmiR535	None	None	panicle architecture	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	OsmiR535 is involved in regulating the cold-stress response, modulating plant development, and determining panicle architecture and grain length
OsmiR535	None	None	stress response	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	OsmiR535 is involved in regulating the cold-stress response, modulating plant development, and determining panicle architecture and grain length
OsmiR535	None	None	stress response	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	Our results demonstrated that OsmiR535 negatively regulates the stress response in rice
OsmiR535	None	None	ER stress	OsmiR535, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in Oryza sativa	Our results showed that OsmiR535 is induced under stressed conditions as compared to control
OsMIZ1	Os02g0709600	LOC_Os02g47980	disease	Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice.	Furthermore, expression studies using publically available resources showed that enhanced expression of OsMIZ1 is regulated in response to disease infections, mineral deficiency, and heavy metal stresses and is also expressed in reproductive tissues in addition to roots
OsMIZ1	Os02g0709600	LOC_Os02g47980	drought	Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice.	These results highlight the possible involvement of OsMIZ1 in drought and salt stress tolerance in rice
OsMIZ1	Os02g0709600	LOC_Os02g47980	salt	Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice.	These results highlight the possible involvement of OsMIZ1 in drought and salt stress tolerance in rice
OsMIZ1	Os02g0709600	LOC_Os02g47980	tolerance	Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice.	These results highlight the possible involvement of OsMIZ1 in drought and salt stress tolerance in rice
OsMIZ1	Os02g0709600	LOC_Os02g47980	salt stress	Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice.	These results highlight the possible involvement of OsMIZ1 in drought and salt stress tolerance in rice
OsMIZ1	Os02g0709600	LOC_Os02g47980	stress	Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice.	These results highlight the possible involvement of OsMIZ1 in drought and salt stress tolerance in rice
OsMIZ1	Os02g0709600	LOC_Os02g47980	reproductive	Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice.	Furthermore, expression studies using publically available resources showed that enhanced expression of OsMIZ1 is regulated in response to disease infections, mineral deficiency, and heavy metal stresses and is also expressed in reproductive tissues in addition to roots
OsMIZ1	Os02g0709600	LOC_Os02g47980	stress tolerance	Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice.	These results highlight the possible involvement of OsMIZ1 in drought and salt stress tolerance in rice
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	transcription factor	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	By comparing the transcription factors levels between WT and osmkk1 mutant, OsMKK1 was necessary for salt-induced increase in OsDREB2B and OsMYBS3
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	salt	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	OsMKK1 activity in the wild-type seedlings and protoplasts was increased by salt stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	salt	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	Taken together, the data suggest that OsMKK1 and OsMPK4 constitute a signaling pathway that regulates salt stress tolerance in rice
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	salt stress	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	OsMKK1 activity in the wild-type seedlings and protoplasts was increased by salt stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	salt stress	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	Taken together, the data suggest that OsMKK1 and OsMPK4 constitute a signaling pathway that regulates salt stress tolerance in rice
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	tolerance	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	Taken together, the data suggest that OsMKK1 and OsMPK4 constitute a signaling pathway that regulates salt stress tolerance in rice
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	stress	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	OsMKK1 activity in the wild-type seedlings and protoplasts was increased by salt stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	stress	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	Taken together, the data suggest that OsMKK1 and OsMPK4 constitute a signaling pathway that regulates salt stress tolerance in rice
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	stress tolerance	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	Taken together, the data suggest that OsMKK1 and OsMPK4 constitute a signaling pathway that regulates salt stress tolerance in rice
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	Kinase	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	Yeast two-hybrid and in vitro and in vivo kinase assays revealed that OsMKK1 targeted OsMPK4
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	seedlings	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	OsMKK1 activity in the wild-type seedlings and protoplasts was increased by salt stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	root	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	seed	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	oxidative stress	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	seed germination	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	tolerance	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	oxidative	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	 ABA 	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 The activation of OsMKK1 and its downstream kinase OsMPK1 is dependent on Thr-25 phosphorylation of OsMKK1 in ABA signaling
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	 ABA 	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	 ABA 	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Our results indicate that OsMKK1 is a direct target of OsDMI3, and OsDMI3-mediated phosphorylation of OsMKK1 plays an important role in activating the MAPK cascade and ABA signaling
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	stress	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	ABA	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 The activation of OsMKK1 and its downstream kinase OsMPK1 is dependent on Thr-25 phosphorylation of OsMKK1 in ABA signaling
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	ABA	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	ABA	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Our results indicate that OsMKK1 is a direct target of OsDMI3, and OsDMI3-mediated phosphorylation of OsMKK1 plays an important role in activating the MAPK cascade and ABA signaling
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	Kinase	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 The activation of OsMKK1 and its downstream kinase OsMPK1 is dependent on Thr-25 phosphorylation of OsMKK1 in ABA signaling
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	kinase	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 The activation of OsMKK1 and its downstream kinase OsMPK1 is dependent on Thr-25 phosphorylation of OsMKK1 in ABA signaling
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	root growth	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	ER stress	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses	 Further analyses revealed that OsDMI3-mediated phosphorylation of OsMKK1 positively regulates ABA responses in seed germination, root growth, and tolerance to both water stress and oxidative stress
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	disease	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 These combined results suggest that OsMEK2 and OsMPK1 expression positively regulates iron- and ROS-dependent ferroptotic cell death, and blast disease (susceptibility)-related cell death was ROS-dependent but iron-independent in rice-M
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	blast	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 These combined results suggest that OsMEK2 and OsMPK1 expression positively regulates iron- and ROS-dependent ferroptotic cell death, and blast disease (susceptibility)-related cell death was ROS-dependent but iron-independent in rice-M
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	magnaporthe oryzae	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	cell death	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	cell death	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 These combined results suggest that OsMEK2 and OsMPK1 expression positively regulates iron- and ROS-dependent ferroptotic cell death, and blast disease (susceptibility)-related cell death was ROS-dependent but iron-independent in rice-M
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	Kinase	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	protein kinase	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	kinase	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	blast disease	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 These combined results suggest that OsMEK2 and OsMPK1 expression positively regulates iron- and ROS-dependent ferroptotic cell death, and blast disease (susceptibility)-related cell death was ROS-dependent but iron-independent in rice-M
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	cell death	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 OsFER2 knock-out in wild-type rice HY did not induce ROS and ferric ion (Fe(3+)) accumulation, lipid peroxidation and hypersensitive response (HR) cell death, and also downregulated the defense-related genes OsPAL1, OsPR1-b, OsRbohB, OsNADP-ME2-3, OsMEK2 and OsMPK1, and vacuolar membrane transporter OsVIT2 expression
OsMKK1|OsMEK2	Os06g0147800	LOC_Os06g05520	transporter	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 OsFER2 knock-out in wild-type rice HY did not induce ROS and ferric ion (Fe(3+)) accumulation, lipid peroxidation and hypersensitive response (HR) cell death, and also downregulated the defense-related genes OsPAL1, OsPR1-b, OsRbohB, OsNADP-ME2-3, OsMEK2 and OsMPK1, and vacuolar membrane transporter OsVIT2 expression
OsMKK3	Os06g0473200	LOC_Os06g27890	resistance	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 It is proposed that OsMKK3 mediated positive regulation of rice resistance to BPH by means of herbivory-induced phytohormone dynamics
OsMKK3	Os06g0473200	LOC_Os06g27890	jasmonate	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 It was observed that mechanical wounding, infestation of brown planthopper (BPH) Nilaparvata lugens, and treatment with methyl jasmonate (MeJA) or salicylic acid (SA) could induce the expression of OsMKK3
OsMKK3	Os06g0473200	LOC_Os06g27890	brown planthopper	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 It was observed that mechanical wounding, infestation of brown planthopper (BPH) Nilaparvata lugens, and treatment with methyl jasmonate (MeJA) or salicylic acid (SA) could induce the expression of OsMKK3
OsMKK3	Os06g0473200	LOC_Os06g27890	salicylic acid	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 It was observed that mechanical wounding, infestation of brown planthopper (BPH) Nilaparvata lugens, and treatment with methyl jasmonate (MeJA) or salicylic acid (SA) could induce the expression of OsMKK3
OsMKK3	Os06g0473200	LOC_Os06g27890	abscisic acid	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 The over-expression of OsMKK3 (oe-MKK3) increased levels of jasmonic acid (JA), jasmonoyl-L-isoleucine (JA-Ile), and abscisic acid (ABA), and decreased SA levels in rice after BPH attack
OsMKK3	Os06g0473200	LOC_Os06g27890	jasmonic	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 The over-expression of OsMKK3 (oe-MKK3) increased levels of jasmonic acid (JA), jasmonoyl-L-isoleucine (JA-Ile), and abscisic acid (ABA), and decreased SA levels in rice after BPH attack
OsMKK3	Os06g0473200	LOC_Os06g27890	jasmonic acid	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 The over-expression of OsMKK3 (oe-MKK3) increased levels of jasmonic acid (JA), jasmonoyl-L-isoleucine (JA-Ile), and abscisic acid (ABA), and decreased SA levels in rice after BPH attack
OsMKK3	Os06g0473200	LOC_Os06g27890	phytohormone	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 It is proposed that OsMKK3 mediated positive regulation of rice resistance to BPH by means of herbivory-induced phytohormone dynamics
OsMKK3	Os06g0473200	LOC_Os06g27890	 sa 	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 The over-expression of OsMKK3 (oe-MKK3) increased levels of jasmonic acid (JA), jasmonoyl-L-isoleucine (JA-Ile), and abscisic acid (ABA), and decreased SA levels in rice after BPH attack
OsMKK3	Os06g0473200	LOC_Os06g27890	SA	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 The over-expression of OsMKK3 (oe-MKK3) increased levels of jasmonic acid (JA), jasmonoyl-L-isoleucine (JA-Ile), and abscisic acid (ABA), and decreased SA levels in rice after BPH attack
OsMKK3	Os06g0473200	LOC_Os06g27890	methyl jasmonate	OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.	 It was observed that mechanical wounding, infestation of brown planthopper (BPH) Nilaparvata lugens, and treatment with methyl jasmonate (MeJA) or salicylic acid (SA) could induce the expression of OsMKK3
OsMKK3	Os06g0473200	LOC_Os06g27890	Kinase	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	 Here, we show that OsMKK3 encode a MAP kinase kinase that controls grain size and chalkiness by affecting cell proliferation in spikelet hulls
OsMKK3	Os06g0473200	LOC_Os06g27890	spikelet	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	 Here, we show that OsMKK3 encode a MAP kinase kinase that controls grain size and chalkiness by affecting cell proliferation in spikelet hulls
OsMKK3	Os06g0473200	LOC_Os06g27890	grain	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.
OsMKK3	Os06g0473200	LOC_Os06g27890	grain	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	 Here, we show that OsMKK3 encode a MAP kinase kinase that controls grain size and chalkiness by affecting cell proliferation in spikelet hulls
OsMKK3	Os06g0473200	LOC_Os06g27890	grain size	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.
OsMKK3	Os06g0473200	LOC_Os06g27890	grain size	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	 Here, we show that OsMKK3 encode a MAP kinase kinase that controls grain size and chalkiness by affecting cell proliferation in spikelet hulls
OsMKK3	Os06g0473200	LOC_Os06g27890	kinase	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	 Here, we show that OsMKK3 encode a MAP kinase kinase that controls grain size and chalkiness by affecting cell proliferation in spikelet hulls
OsMKK3	Os06g0473200	LOC_Os06g27890	domestication	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	 Wild rice accessions contained four OsMKK3 haplotypes, suggesting that the OsMKK3 haplotypes present in cultivated rice likely originated from different wild rice accessions during rice domestication
OsMKK3	Os06g0473200	LOC_Os06g27890	breeding	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	 Overall, the results indicated that beneficial OsMKK3 alleles could be used for genomic-assisted breeding for rice cultivar improvement and be polymerized with other beneficial alleles
OsMKK3	Os06g0473200	LOC_Os06g27890	chalkiness	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.
OsMKK3	Os06g0473200	LOC_Os06g27890	chalkiness	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	 Here, we show that OsMKK3 encode a MAP kinase kinase that controls grain size and chalkiness by affecting cell proliferation in spikelet hulls
OsMKK3	Os06g0473200	LOC_Os06g27890	cell proliferation	Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice.	 Here, we show that OsMKK3 encode a MAP kinase kinase that controls grain size and chalkiness by affecting cell proliferation in spikelet hulls
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	brassinosteroid	SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice	Further results revealed that OsMKK4 influenced brassinosteroid (BR) responses and the expression of BR-related genes
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	root	Arsenic stress activates MAP kinase in rice roots and leaves	Among MAPK kinase (MKKs) gene family, OsMKK4 transcripts were found to be induced in arsenite treated rice leaves and roots
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	arsenite	Arsenic stress activates MAP kinase in rice roots and leaves	Among MAPK kinase (MKKs) gene family, OsMKK4 transcripts were found to be induced in arsenite treated rice leaves and roots
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	grain	SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice	Thus, our findings have identified OsMKK4 as a factor for grain size, and suggest a possible link between the MAPK pathways and BRs in grain growth
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	grain size	SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice	Thus, our findings have identified OsMKK4 as a factor for grain size, and suggest a possible link between the MAPK pathways and BRs in grain growth
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	growth	SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice	Thus, our findings have identified OsMKK4 as a factor for grain size, and suggest a possible link between the MAPK pathways and BRs in grain growth
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	wounding response	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	biotic stress	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice	Taken together, components involving in the wounding signaling pathway, OsMKK4-OsMPK1-OsWRKY53, can be important players in regulating crosstalk between abiotic stress and biotic stress.
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	grain	Control of grain size and weight by the OsMKKK10-OsMKK4-OsMAPK6 signaling pathway in rice.	Further biochemical and genetic analyses reveal that OsMKKK10, OsMKK4 and OsMAPK6 function in a common pathway to control grain size
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	grain size	Control of grain size and weight by the OsMKKK10-OsMKK4-OsMAPK6 signaling pathway in rice.	Further biochemical and genetic analyses reveal that OsMKKK10, OsMKK4 and OsMAPK6 function in a common pathway to control grain size
OsMKK4|LARGE11	Os02g0787300	LOC_Os02g54600	Kinase	Control of grain size and weight by the OsMKKK10-OsMKK4-OsMAPK6 signaling pathway in rice.	OsMKK4A227T encoded by the large11-1D allele has stronger kinase activity than OsMKK4
OsMKKK70	Os01g0699500	LOC_Os01g50410	leaf	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.
OsMKKK70	Os01g0699500	LOC_Os01g50410	leaf	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Here we demonstrate that the Oryza sativa Mitogen Activated Protein Kinase Kinase Kinase OsMKKK70 regulates grain size and leaf angle in rice
OsMKKK70	Os01g0699500	LOC_Os01g50410	leaf	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 The osmkkk62/70 double mutant and the osmkkk55/62/70 triple mutant displayed significantly smaller seeds and a more erect leaf angle compared to the wild type, indicating that OsMKKK70 functions redundantly with its homologs OsMKKK62 and OsMKKK55
OsMKKK70	Os01g0699500	LOC_Os01g50410	leaf	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Taken together, these findings suggest that OsMKKK70 might regulates grain size and leaf angle in rice by activating OsMAPK6 and that OsMKKK70, OsMKK4, OsMAPK6, and OsWRKY53 function in a common signaling pathway that controls grain shape and leaf angle
OsMKKK70	Os01g0699500	LOC_Os01g50410	grain	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.
OsMKKK70	Os01g0699500	LOC_Os01g50410	grain	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Here we demonstrate that the Oryza sativa Mitogen Activated Protein Kinase Kinase Kinase OsMKKK70 regulates grain size and leaf angle in rice
OsMKKK70	Os01g0699500	LOC_Os01g50410	grain	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Taken together, these findings suggest that OsMKKK70 might regulates grain size and leaf angle in rice by activating OsMAPK6 and that OsMKKK70, OsMKK4, OsMAPK6, and OsWRKY53 function in a common signaling pathway that controls grain shape and leaf angle
OsMKKK70	Os01g0699500	LOC_Os01g50410	grain size	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.
OsMKKK70	Os01g0699500	LOC_Os01g50410	grain size	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Here we demonstrate that the Oryza sativa Mitogen Activated Protein Kinase Kinase Kinase OsMKKK70 regulates grain size and leaf angle in rice
OsMKKK70	Os01g0699500	LOC_Os01g50410	grain size	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Taken together, these findings suggest that OsMKKK70 might regulates grain size and leaf angle in rice by activating OsMAPK6 and that OsMKKK70, OsMKK4, OsMAPK6, and OsWRKY53 function in a common signaling pathway that controls grain shape and leaf angle
OsMKKK70	Os01g0699500	LOC_Os01g50410	Kinase	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Here we demonstrate that the Oryza sativa Mitogen Activated Protein Kinase Kinase Kinase OsMKKK70 regulates grain size and leaf angle in rice
OsMKKK70	Os01g0699500	LOC_Os01g50410	Kinase	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Biochemical analysis demonstrated that OsMKKK70 is an active kinase and that OsMKKK70 interacts with OsMKK4 and promotes OsMAPK6 phosphorylation
OsMKKK70	Os01g0699500	LOC_Os01g50410	protein kinase	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Here we demonstrate that the Oryza sativa Mitogen Activated Protein Kinase Kinase Kinase OsMKKK70 regulates grain size and leaf angle in rice
OsMKKK70	Os01g0699500	LOC_Os01g50410	erect	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 The osmkkk62/70 double mutant and the osmkkk55/62/70 triple mutant displayed significantly smaller seeds and a more erect leaf angle compared to the wild type, indicating that OsMKKK70 functions redundantly with its homologs OsMKKK62 and OsMKKK55
OsMKKK70	Os01g0699500	LOC_Os01g50410	kinase	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Here we demonstrate that the Oryza sativa Mitogen Activated Protein Kinase Kinase Kinase OsMKKK70 regulates grain size and leaf angle in rice
OsMKKK70	Os01g0699500	LOC_Os01g50410	kinase	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Biochemical analysis demonstrated that OsMKKK70 is an active kinase and that OsMKKK70 interacts with OsMKK4 and promotes OsMAPK6 phosphorylation
OsMKKK70	Os01g0699500	LOC_Os01g50410	leaf angle	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.
OsMKKK70	Os01g0699500	LOC_Os01g50410	leaf angle	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Here we demonstrate that the Oryza sativa Mitogen Activated Protein Kinase Kinase Kinase OsMKKK70 regulates grain size and leaf angle in rice
OsMKKK70	Os01g0699500	LOC_Os01g50410	leaf angle	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 The osmkkk62/70 double mutant and the osmkkk55/62/70 triple mutant displayed significantly smaller seeds and a more erect leaf angle compared to the wild type, indicating that OsMKKK70 functions redundantly with its homologs OsMKKK62 and OsMKKK55
OsMKKK70	Os01g0699500	LOC_Os01g50410	leaf angle	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Taken together, these findings suggest that OsMKKK70 might regulates grain size and leaf angle in rice by activating OsMAPK6 and that OsMKKK70, OsMKK4, OsMAPK6, and OsWRKY53 function in a common signaling pathway that controls grain shape and leaf angle
OsMKKK70	Os01g0699500	LOC_Os01g50410	grain shape	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	 Taken together, these findings suggest that OsMKKK70 might regulates grain size and leaf angle in rice by activating OsMAPK6 and that OsMKKK70, OsMKK4, OsMAPK6, and OsWRKY53 function in a common signaling pathway that controls grain shape and leaf angle
OsMKKK70	Os01g0699500	LOC_Os01g50410	Kinase	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 In this study, a function of OsMKKK70 (Mitogen Activated Protein Kinase Kinase Kinase 70) in response to CTB was characterized
OsMKKK70	Os01g0699500	LOC_Os01g50410	kinase	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 In this study, a function of OsMKKK70 (Mitogen Activated Protein Kinase Kinase Kinase 70) in response to CTB was characterized
OsMKKK70	Os01g0699500	LOC_Os01g50410	pollen	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 overexpression (OsMKKK70-OE) plants were more sensitive to cold stress at the booting stage with a lower seed setting and pollen fertility, but there was no significant difference between the osmkkk70 mutant and WT
OsMKKK70	Os01g0699500	LOC_Os01g50410	pollen	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Considering the effect of functional redundancy, we further tested the CTB response of osmkkk62/70 and osmkkk55/62/70, the double and triple mutants of OsMKKK70 with its closest homologs OsMKKK62 and OsMKKK55, and found that osmkkk62/70 and osmkkk55/62/70 displayed significantly increased CTB with a higher seed setting and pollen fertility, indicating that OsMKKK70 negatively regulates rice CTB
OsMKKK70	Os01g0699500	LOC_Os01g50410	stress	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 expression was rapidly induced by cold stress at the booting stage
OsMKKK70	Os01g0699500	LOC_Os01g50410	stress	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 overexpression (OsMKKK70-OE) plants were more sensitive to cold stress at the booting stage with a lower seed setting and pollen fertility, but there was no significant difference between the osmkkk70 mutant and WT
OsMKKK70	Os01g0699500	LOC_Os01g50410	seed	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 overexpression (OsMKKK70-OE) plants were more sensitive to cold stress at the booting stage with a lower seed setting and pollen fertility, but there was no significant difference between the osmkkk70 mutant and WT
OsMKKK70	Os01g0699500	LOC_Os01g50410	seed	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Considering the effect of functional redundancy, we further tested the CTB response of osmkkk62/70 and osmkkk55/62/70, the double and triple mutants of OsMKKK70 with its closest homologs OsMKKK62 and OsMKKK55, and found that osmkkk62/70 and osmkkk55/62/70 displayed significantly increased CTB with a higher seed setting and pollen fertility, indicating that OsMKKK70 negatively regulates rice CTB
OsMKKK70	Os01g0699500	LOC_Os01g50410	tolerance	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.
OsMKKK70	Os01g0699500	LOC_Os01g50410	cold tolerance	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.
OsMKKK70	Os01g0699500	LOC_Os01g50410	cold stress	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 expression was rapidly induced by cold stress at the booting stage
OsMKKK70	Os01g0699500	LOC_Os01g50410	cold stress	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 overexpression (OsMKKK70-OE) plants were more sensitive to cold stress at the booting stage with a lower seed setting and pollen fertility, but there was no significant difference between the osmkkk70 mutant and WT
OsMKKK70	Os01g0699500	LOC_Os01g50410	cold	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.
OsMKKK70	Os01g0699500	LOC_Os01g50410	cold	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 expression was rapidly induced by cold stress at the booting stage
OsMKKK70	Os01g0699500	LOC_Os01g50410	cold	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 overexpression (OsMKKK70-OE) plants were more sensitive to cold stress at the booting stage with a lower seed setting and pollen fertility, but there was no significant difference between the osmkkk70 mutant and WT
OsMKKK70	Os01g0699500	LOC_Os01g50410	ga	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Together, these findings suggest that OsMKKK70 negatively regulates rice CTB by fine-tuning GA levels in anthers
OsMKKK70	Os01g0699500	LOC_Os01g50410	 ga 	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Together, these findings suggest that OsMKKK70 negatively regulates rice CTB by fine-tuning GA levels in anthers
OsMKKK70	Os01g0699500	LOC_Os01g50410	protein kinase	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 In this study, a function of OsMKKK70 (Mitogen Activated Protein Kinase Kinase Kinase 70) in response to CTB was characterized
OsMKKK70	Os01g0699500	LOC_Os01g50410	GA	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Together, these findings suggest that OsMKKK70 negatively regulates rice CTB by fine-tuning GA levels in anthers
OsMKKK70	Os01g0699500	LOC_Os01g50410	Pollen Fertility	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 overexpression (OsMKKK70-OE) plants were more sensitive to cold stress at the booting stage with a lower seed setting and pollen fertility, but there was no significant difference between the osmkkk70 mutant and WT
OsMKKK70	Os01g0699500	LOC_Os01g50410	Pollen Fertility	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Considering the effect of functional redundancy, we further tested the CTB response of osmkkk62/70 and osmkkk55/62/70, the double and triple mutants of OsMKKK70 with its closest homologs OsMKKK62 and OsMKKK55, and found that osmkkk62/70 and osmkkk55/62/70 displayed significantly increased CTB with a higher seed setting and pollen fertility, indicating that OsMKKK70 negatively regulates rice CTB
OsMKKK70	Os01g0699500	LOC_Os01g50410	seed set	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 OsMKKK70 overexpression (OsMKKK70-OE) plants were more sensitive to cold stress at the booting stage with a lower seed setting and pollen fertility, but there was no significant difference between the osmkkk70 mutant and WT
OsMKKK70	Os01g0699500	LOC_Os01g50410	seed set	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Considering the effect of functional redundancy, we further tested the CTB response of osmkkk62/70 and osmkkk55/62/70, the double and triple mutants of OsMKKK70 with its closest homologs OsMKKK62 and OsMKKK55, and found that osmkkk62/70 and osmkkk55/62/70 displayed significantly increased CTB with a higher seed setting and pollen fertility, indicating that OsMKKK70 negatively regulates rice CTB
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	dwarf	A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice	Unlike the Arabidopsis atmkp1 loss-of-function mutant, which shows no abnormal phenotype without stimuli, osmkp1 showed a semi-dwarf phenotype
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	dwarf	A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice	Exogenous supply of neither gibberellin nor brassinosteroid complemented the semi-dwarf phenotype of osmkp1
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	brassinosteroid	A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice	Exogenous supply of neither gibberellin nor brassinosteroid complemented the semi-dwarf phenotype of osmkp1
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	gibberellin	A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice	Exogenous supply of neither gibberellin nor brassinosteroid complemented the semi-dwarf phenotype of osmkp1
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	panicle	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	We confirmed that GSN1 is a negative regulator of the OsMKKK10-OsMKK4-OsMPK6 cascade that determines panicle architecture
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	grain	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	Reduced expression of GSN1 resulted in larger and fewer grains, whereas increased expression resulted in more grains but reduced grain size
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	grain size	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	Reduced expression of GSN1 resulted in larger and fewer grains, whereas increased expression resulted in more grains but reduced grain size
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	architecture	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	We confirmed that GSN1 is a negative regulator of the OsMKKK10-OsMKK4-OsMPK6 cascade that determines panicle architecture
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	Kinase	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	GSN1 encodes the mitogen-activated protein kinase phosphatase OsMKP1, a dual-specificity phosphatase of unknown function
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	Kinase	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	GSN1 directly interacts with and inactivates the mitogen-activated protein kinase OsMPK6 via dephosphorylation
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	Kinase	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	Consistent with this finding, the suppression of mitogen-activated protein kinase genes OsMPK6, OsMKK4, and OsMKKK10 separately resulted in denser panicles and smaller grains, which rescued the mutant gsn1 phenotypes
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	panicle architecture	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	We confirmed that GSN1 is a negative regulator of the OsMKKK10-OsMKK4-OsMPK6 cascade that determines panicle architecture
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	protein kinase	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	GSN1 encodes the mitogen-activated protein kinase phosphatase OsMKP1, a dual-specificity phosphatase of unknown function
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	protein kinase	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	GSN1 directly interacts with and inactivates the mitogen-activated protein kinase OsMPK6 via dephosphorylation
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	protein kinase	GRAIN SIZE AND NUMBER1 Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice.	Consistent with this finding, the suppression of mitogen-activated protein kinase genes OsMPK6, OsMKK4, and OsMKKK10 separately resulted in denser panicles and smaller grains, which rescued the mutant gsn1 phenotypes
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	Kinase	A Mitogen-Activated Protein Kinase Phosphatase influences grain size and weight in rice.	LARGE8 encodes the mitogen-activated protein kinase phosphatase1 (OsMKP1)
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	protein kinase	A Mitogen-Activated Protein Kinase Phosphatase influences grain size and weight in rice.	LARGE8 encodes the mitogen-activated protein kinase phosphatase1 (OsMKP1)
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	grain	GRAIN LENGTH AND AWN 1 negatively regulates grain size in rice.	Overexpression of GLA1 caused a decrease in grain length, and the GLA1 protein interacted with OsMAPK6
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	grain	GRAIN LENGTH AND AWN 1 negatively regulates grain size in rice.	These results suggest that GLA1 may serve as a negative regulator of the OsMAPKK4-OsMAPK6 cascade, controlling grain size via the dephosphorylation of OsMAPK6
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	grain length	GRAIN LENGTH AND AWN 1 negatively regulates grain size in rice.	Overexpression of GLA1 caused a decrease in grain length, and the GLA1 protein interacted with OsMAPK6
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	grain size	GRAIN LENGTH AND AWN 1 negatively regulates grain size in rice.	These results suggest that GLA1 may serve as a negative regulator of the OsMAPKK4-OsMAPK6 cascade, controlling grain size via the dephosphorylation of OsMAPK6
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	Kinase	GRAIN LENGTH AND AWN 1 negatively regulates grain size in rice.	The gla1 mutation was mapped to a single-nucleotide polymorphism in a gene encoding a cytoplasmically-localized mitogen-activated protein kinase (MAPK) phosphatase
OsMKP1|GSN1|LARGE8|GLA1	Os05g0115800	LOC_Os05g02500	protein kinase	GRAIN LENGTH AND AWN 1 negatively regulates grain size in rice.	The gla1 mutation was mapped to a single-nucleotide polymorphism in a gene encoding a cytoplasmically-localized mitogen-activated protein kinase (MAPK) phosphatase
OsMLD1	Os03g0124300	LOC_Os03g03290	quality	The Rice Malectin Regulates Plant Cell Death and Disease Resistance by Participating in Glycoprotein Quality Control.	 Thus, OsMLD1 may play a similar role to its mammalian homologs in glycoprotein quality control, thereby regulating cell death and immunity of rice, which uncovers the function of malectin in plants
OsMLD1	Os03g0124300	LOC_Os03g03290	immunity	The Rice Malectin Regulates Plant Cell Death and Disease Resistance by Participating in Glycoprotein Quality Control.	 Thus, OsMLD1 may play a similar role to its mammalian homologs in glycoprotein quality control, thereby regulating cell death and immunity of rice, which uncovers the function of malectin in plants
OsMLD1	Os03g0124300	LOC_Os03g03290	cell death	The Rice Malectin Regulates Plant Cell Death and Disease Resistance by Participating in Glycoprotein Quality Control.	 Thus, OsMLD1 may play a similar role to its mammalian homologs in glycoprotein quality control, thereby regulating cell death and immunity of rice, which uncovers the function of malectin in plants
OsMLD1	Os03g0124300	LOC_Os03g03290	malectin	The Rice Malectin Regulates Plant Cell Death and Disease Resistance by Participating in Glycoprotein Quality Control	Thus, OsMLD1 may play a similar role to its mammalian homologs in glycoprotein quality control, thereby regulating cell death and immunity of rice, which uncovers the function of malectin in plants.
OsMLD1	Os03g0124300	LOC_Os03g03290	glycoprotein quality control	The Rice Malectin Regulates Plant Cell Death and Disease Resistance by Participating in Glycoprotein Quality Control	Thus, OsMLD1 may play a similar role to its mammalian homologs in glycoprotein quality control, thereby regulating cell death and immunity of rice, which uncovers the function of malectin in plants.
OsMLD1	Os03g0124300	LOC_Os03g03290	glycoprotein	The Rice Malectin Regulates Plant Cell Death and Disease Resistance by Participating in Glycoprotein Quality Control	Thus, OsMLD1 may play a similar role to its mammalian homologs in glycoprotein quality control, thereby regulating cell death and immunity of rice, which uncovers the function of malectin in plants.
OsMLD1	Os03g0124300	LOC_Os03g03290	disease resistance	The Rice Malectin Regulates Plant Cell Death and Disease Resistance by Participating in Glycoprotein Quality Control	Here, we demonstrate the rice OsMLD1 is an ER- and Golgi-associated malectin protein and physically interacts with rice homolog of ribophorin I (OsRpn1), and its disruption leads to spontaneous lesion mimic lesions, enhanced disease resistance, and prolonged ER stress.
OsMLD1	Os03g0124300	LOC_Os03g03290	ER stress	The Rice Malectin Regulates Plant Cell Death and Disease Resistance by Participating in Glycoprotein Quality Control	Here, we demonstrate the rice OsMLD1 is an ER- and Golgi-associated malectin protein and physically interacts with rice homolog of ribophorin I (OsRpn1), and its disruption leads to spontaneous lesion mimic lesions, enhanced disease resistance, and prolonged ER stress.
OsMLH1|PSSR1	Os01g0958900	LOC_Os01g72880	development	Rice MutL��, the MLH1-MLH3 heterodimer, participates in the formation of type I crossovers and regulation of embryo sac fertility	 OsMLH3 and OsMLH1 (MutL-homolog 1) interact to form a heterodimer (MutL��) to promote crossover formation in the macrospore and microspore mother cells and development of functional megaspore during meiosis, defective OsMLH3 or OsMLH1 in fsv1 and CRISPR/Cas9-based knockout lines results in reduced type I crossover and bivalent frequency
OsMLH1|PSSR1	Os01g0958900	LOC_Os01g72880	microspore	Rice MutL��, the MLH1-MLH3 heterodimer, participates in the formation of type I crossovers and regulation of embryo sac fertility	 OsMLH3 and OsMLH1 (MutL-homolog 1) interact to form a heterodimer (MutL��) to promote crossover formation in the macrospore and microspore mother cells and development of functional megaspore during meiosis, defective OsMLH3 or OsMLH1 in fsv1 and CRISPR/Cas9-based knockout lines results in reduced type I crossover and bivalent frequency
OsMLH1|PSSR1	Os01g0958900	LOC_Os01g72880	crossover	Rice MutL��, the MLH1-MLH3 heterodimer, participates in the formation of type I crossovers and regulation of embryo sac fertility	 OsMLH3 and OsMLH1 (MutL-homolog 1) interact to form a heterodimer (MutL��) to promote crossover formation in the macrospore and microspore mother cells and development of functional megaspore during meiosis, defective OsMLH3 or OsMLH1 in fsv1 and CRISPR/Cas9-based knockout lines results in reduced type I crossover and bivalent frequency
OsMLH1|PSSR1	Os01g0958900	LOC_Os01g72880	meiosis	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice
OsMLH1|PSSR1	Os01g0958900	LOC_Os01g72880	meiosis	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice	 Here, we report the identification of OsMLH1 and reveal its functions during meiosis in rice
OsMLH1|PSSR1	Os01g0958900	LOC_Os01g72880	crossover	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice
OsMLH1|PSSR1	Os01g0958900	LOC_Os01g72880	seed set	A retrotransposon insertion in MUTL-HOMOLOG 1 affects wild rice seed set and cultivated rice crossover rate	A retrotransposon insertion in MUTL-HOMOLOG 1 affects wild rice seed set and cultivated rice crossover rate
OsMLH3	Os09g0551900	LOC_Os09g37930	development	Rice MutL, the MLH1-MLH3 heterodimer, participates in the formation of type I crossovers and regulation of embryo sac fertility	OsMLH3 and OsMLH1 (MutL-homolog 1) interact to form a heterodimer (MutL) to promote crossover formation in the macrospore and microspore mother cells and development of functional megaspore during meiosis, defective OsMLH3 or OsMLH1 in fsv1 and CRISPR/Cas9-based knockout lines results in reduced type I crossover and bivalent frequency
OsMLH3	Os09g0551900	LOC_Os09g37930	map-based cloning	Rice MutL, the MLH1-MLH3 heterodimer, participates in the formation of type I crossovers and regulation of embryo sac fertility	Through map-based cloning and functional analyses, we isolated the causal gene of fsv1, OsMLH3 encoding a MutL-homolog 3 protein, an ortholog of HvMLH3 in barley and AtMLH3 in Arabidopsis
OsMLH3	Os09g0551900	LOC_Os09g37930	microspore	Rice MutL, the MLH1-MLH3 heterodimer, participates in the formation of type I crossovers and regulation of embryo sac fertility	OsMLH3 and OsMLH1 (MutL-homolog 1) interact to form a heterodimer (MutL) to promote crossover formation in the macrospore and microspore mother cells and development of functional megaspore during meiosis, defective OsMLH3 or OsMLH1 in fsv1 and CRISPR/Cas9-based knockout lines results in reduced type I crossover and bivalent frequency
OsMLH3	Os09g0551900	LOC_Os09g37930	crossover	Rice MutL, the MLH1-MLH3 heterodimer, participates in the formation of type I crossovers and regulation of embryo sac fertility	OsMLH3 and OsMLH1 (MutL-homolog 1) interact to form a heterodimer (MutL) to promote crossover formation in the macrospore and microspore mother cells and development of functional megaspore during meiosis, defective OsMLH3 or OsMLH1 in fsv1 and CRISPR/Cas9-based knockout lines results in reduced type I crossover and bivalent frequency
OsMLH3	Os09g0551900	LOC_Os09g37930	fertility	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice	Mutation in OsMLH3 also affects the pollen fertility
OsMLH3	Os09g0551900	LOC_Os09g37930	pollen	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice	Mutation in OsMLH3 also affects the pollen fertility
OsMLH3	Os09g0551900	LOC_Os09g37930	meiosis	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice
OsMLH3	Os09g0551900	LOC_Os09g37930	crossover	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice
OsMLO12	Os05g0183300	LOC_Os05g09050	pollen	OsMLO12, encoding seven transmembrane proteins, is involved with pollen hydration in rice.	OsMLO12 is highly expressed in mature pollen grains; plants containing alleles caused by transfer DNA insertions do not produce homozygous progeny
OsMLO12	Os05g0183300	LOC_Os05g09050	pollen hydration	OsMLO12, encoding seven transmembrane proteins, is involved with pollen hydration in rice	OsMLO12, encoding seven transmembrane proteins, is involved with pollen hydration in rice
OsMLO12	Os05g0183300	LOC_Os05g09050	pollen	OsMLO12, encoding seven transmembrane proteins, is involved with pollen hydration in rice	OsMLO12, encoding seven transmembrane proteins, is involved with pollen hydration in rice
OsMLP423	Os04g0465600	LOC_Os04g39150	drought	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.
OsMLP423	Os04g0465600	LOC_Os04g39150	drought	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 The results of real-time PCR showed that OsMLP423 was strongly induced by drought and salt stresses
OsMLP423	Os04g0465600	LOC_Os04g39150	drought	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 The physiological and biochemical phenotype analysis of transgenic plants confirmed that overexpression of OsMLP423 enhanced the tolerance to drought and salt stresses in rice
OsMLP423	Os04g0465600	LOC_Os04g39150	drought	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 Physiological analyses showed that the overexpression of OsMLP423 may regulate the water loss efficiency and ABA-responsive gene expression of rice plants under drought and salt stresses, and it reduces membrane damage and the accumulation of reactive oxygen species
OsMLP423	Os04g0465600	LOC_Os04g39150	drought	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 These results indicate that OsMLP423 is a positive regulator of drought and salinity tolerance in rice, governing the tolerance of rice to abiotic stresses through an ABA-dependent pathway
OsMLP423	Os04g0465600	LOC_Os04g39150	salinity	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 These results indicate that OsMLP423 is a positive regulator of drought and salinity tolerance in rice, governing the tolerance of rice to abiotic stresses through an ABA-dependent pathway
OsMLP423	Os04g0465600	LOC_Os04g39150	salt	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.
OsMLP423	Os04g0465600	LOC_Os04g39150	salt	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 The results of real-time PCR showed that OsMLP423 was strongly induced by drought and salt stresses
OsMLP423	Os04g0465600	LOC_Os04g39150	salt	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 The physiological and biochemical phenotype analysis of transgenic plants confirmed that overexpression of OsMLP423 enhanced the tolerance to drought and salt stresses in rice
OsMLP423	Os04g0465600	LOC_Os04g39150	salt	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 Physiological analyses showed that the overexpression of OsMLP423 may regulate the water loss efficiency and ABA-responsive gene expression of rice plants under drought and salt stresses, and it reduces membrane damage and the accumulation of reactive oxygen species
OsMLP423	Os04g0465600	LOC_Os04g39150	tolerance	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.
OsMLP423	Os04g0465600	LOC_Os04g39150	tolerance	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 The physiological and biochemical phenotype analysis of transgenic plants confirmed that overexpression of OsMLP423 enhanced the tolerance to drought and salt stresses in rice
OsMLP423	Os04g0465600	LOC_Os04g39150	tolerance	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 These results indicate that OsMLP423 is a positive regulator of drought and salinity tolerance in rice, governing the tolerance of rice to abiotic stresses through an ABA-dependent pathway
OsMLP423	Os04g0465600	LOC_Os04g39150	nucleus	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 The expression of OsMLP423-GFP fusion protein indicated that OsMLP423 was located in both the cell membrane system and nucleus
OsMLP423	Os04g0465600	LOC_Os04g39150	abiotic stress	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 These results indicate that OsMLP423 is a positive regulator of drought and salinity tolerance in rice, governing the tolerance of rice to abiotic stresses through an ABA-dependent pathway
OsMLP423	Os04g0465600	LOC_Os04g39150	ABA	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 Compared with the wild type, the overexpressed OsMLP423 showed enhanced sensitivity to ABA
OsMLP423	Os04g0465600	LOC_Os04g39150	salt stress	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.
OsMLP423	Os04g0465600	LOC_Os04g39150	salt stress	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 The results of real-time PCR showed that OsMLP423 was strongly induced by drought and salt stresses
OsMLP423	Os04g0465600	LOC_Os04g39150	salt stress	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 The physiological and biochemical phenotype analysis of transgenic plants confirmed that overexpression of OsMLP423 enhanced the tolerance to drought and salt stresses in rice
OsMLP423	Os04g0465600	LOC_Os04g39150	salt stress	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 Physiological analyses showed that the overexpression of OsMLP423 may regulate the water loss efficiency and ABA-responsive gene expression of rice plants under drought and salt stresses, and it reduces membrane damage and the accumulation of reactive oxygen species
OsMLP423	Os04g0465600	LOC_Os04g39150	biotic stress	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 These results indicate that OsMLP423 is a positive regulator of drought and salinity tolerance in rice, governing the tolerance of rice to abiotic stresses through an ABA-dependent pathway
OsMLP423	Os04g0465600	LOC_Os04g39150	reactive oxygen species	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 Physiological analyses showed that the overexpression of OsMLP423 may regulate the water loss efficiency and ABA-responsive gene expression of rice plants under drought and salt stresses, and it reduces membrane damage and the accumulation of reactive oxygen species
OsMLP423	Os04g0465600	LOC_Os04g39150	water loss	OsMLP423 Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	 Physiological analyses showed that the overexpression of OsMLP423 may regulate the water loss efficiency and ABA-responsive gene expression of rice plants under drought and salt stresses, and it reduces membrane damage and the accumulation of reactive oxygen species
OsMMP1	Os02g0740700	LOC_Os02g50730	development	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.
OsMMP1	Os02g0740700	LOC_Os02g50730	development	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	The plasma membrane-localized OsMMP1 protease affected plant development upon heterologous expression in tobacco and endogenous gene silencing in rice
OsMMP1	Os02g0740700	LOC_Os02g50730	vegetative	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	Analyses of transcript accumulation and promoter-reporter gene expression revealed that OsMMP1 is spatio-temporally expressed in vegetative and reproductive parts of plants
OsMMP1	Os02g0740700	LOC_Os02g50730	reproductive	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	Analyses of transcript accumulation and promoter-reporter gene expression revealed that OsMMP1 is spatio-temporally expressed in vegetative and reproductive parts of plants
OsMMP1	Os02g0740700	LOC_Os02g50730	cellulose	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.
OsMMP1	Os02g0740700	LOC_Os02g50730	cellulose	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	Transgenic tobacco plants expressing OsMMP1 showed enhanced deposition of cellulose and callose, leading to impairment of symplastic and apoplastic translocations
OsMMP1	Os02g0740700	LOC_Os02g50730	plasma membrane	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	The plasma membrane-localized OsMMP1 protease affected plant development upon heterologous expression in tobacco and endogenous gene silencing in rice
OsMMP1	Os02g0740700	LOC_Os02g50730	plant development	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.
OsMMP1	Os02g0740700	LOC_Os02g50730	plant development	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	The plasma membrane-localized OsMMP1 protease affected plant development upon heterologous expression in tobacco and endogenous gene silencing in rice
OsMMP1	Os02g0740700	LOC_Os02g50730	albumin	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	Bacterially expressed recombinant OsMMP1 showed protease activity with bovine serum albumin and gelatin as substrates
OsMOGS	Os01g0921200	LOC_Os01g69210	N-glycan formation	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.)	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.)
OsMOGS	Os01g0921200	LOC_Os01g69210	auxin-mediated root development	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.)	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.)
OsMOGS	Os01g0921200	LOC_Os01g69210	root development	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.)	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.)
OsMOGS	Os01g0921200	LOC_Os01g69210	auxin	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.)	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.)
OsMOS1	Os12g0566200	LOC_Os12g37860	grain	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 Here, we found that OsMOS1 promotes rice heading and affects its grain size
OsMOS1	Os12g0566200	LOC_Os12g37860	grain	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 In addition, knocking out OsMOS1 led to larger grains with longer grain lengths and higher grain weights
OsMOS1	Os12g0566200	LOC_Os12g37860	grain length	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 In addition, knocking out OsMOS1 led to larger grains with longer grain lengths and higher grain weights
OsMOS1	Os12g0566200	LOC_Os12g37860	grain size	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 Here, we found that OsMOS1 promotes rice heading and affects its grain size
OsMOS1	Os12g0566200	LOC_Os12g37860	seed	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 The seed cell size measurement showed that the cell lengths and cell widths of the outer glume epidermal cells of the osmos1 mutant were greater than those of the wild type
OsMOS1	Os12g0566200	LOC_Os12g37860	seed	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 Furthermore, we also found that the overexpression of OsMOS1 in the Arabidopsis&amp;amp;nbsp;mos1 mutant background could suppress its phenotypes of late flowering and increased seed size
OsMOS1	Os12g0566200	LOC_Os12g37860	seed	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 Thus, our study shows a conserved function of MOS1 in rice and Arabidopsis, and these findings shed light on the heading and seed size regulation in rice and suggest that OsMOS1 is a promising target for rice yield improvement
OsMOS1	Os12g0566200	LOC_Os12g37860	yield	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 Thus, our study shows a conserved function of MOS1 in rice and Arabidopsis, and these findings shed light on the heading and seed size regulation in rice and suggest that OsMOS1 is a promising target for rice yield improvement
OsMOS1	Os12g0566200	LOC_Os12g37860	grain weight	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 In addition, knocking out OsMOS1 led to larger grains with longer grain lengths and higher grain weights
OsMOS1	Os12g0566200	LOC_Os12g37860	seed size	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 Furthermore, we also found that the overexpression of OsMOS1 in the Arabidopsis&amp;amp;nbsp;mos1 mutant background could suppress its phenotypes of late flowering and increased seed size
OsMOS1	Os12g0566200	LOC_Os12g37860	seed size	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 Thus, our study shows a conserved function of MOS1 in rice and Arabidopsis, and these findings shed light on the heading and seed size regulation in rice and suggest that OsMOS1 is a promising target for rice yield improvement
OsMOS1	Os12g0566200	LOC_Os12g37860	flowering	Functional Conservation and Divergence of MOS1 That Controls Flowering Time and Seed Size in Rice and Arabidopsis.	 Furthermore, we also found that the overexpression of OsMOS1 in the Arabidopsis&amp;amp;nbsp;mos1 mutant background could suppress its phenotypes of late flowering and increased seed size
OsMOT1;1	Os08g0101500	LOC_Os08g01120	grain	Natural variation in a molybdate transporter controls grain molybdenum concentration in rice.	Identification of natural allelic variation in OsMOT1;1 may facilitate the development of rice varieties with Mo enriched grain for dietary needs and improve Mo nutrition of rice on Mo-deficient soils
OsMOT1;1	Os08g0101500	LOC_Os08g01120	development	Natural variation in a molybdate transporter controls grain molybdenum concentration in rice.	Identification of natural allelic variation in OsMOT1;1 may facilitate the development of rice varieties with Mo enriched grain for dietary needs and improve Mo nutrition of rice on Mo-deficient soils
OsMOT1;1	Os08g0101500	LOC_Os08g01120	grain	Genetic mapping of ionomic quantitative trait loci in rice grain and straw reveals OsMOT1;1 as the putative causal gene for a molybdenum QTL qMo8.	Genetic mapping of ionomic quantitative trait loci in rice grain and straw reveals OsMOT1;1 as the putative causal gene for a molybdenum QTL qMo8.
OsMOT1;1	Os08g0101500	LOC_Os08g01120	grain	Genetic mapping of ionomic quantitative trait loci in rice grain and straw reveals OsMOT1;1 as the putative causal gene for a molybdenum QTL qMo8.	Furthermore, we identified a molybdate transporter gene OsMOT1;1 as the putative causal gene for a QTL controlling molybdenum concentration in both straw and grain
OsMOT1;1	Os08g0101500	LOC_Os08g01120	transporter	Genetic mapping of ionomic quantitative trait loci in rice grain and straw reveals OsMOT1;1 as the putative causal gene for a molybdenum QTL qMo8.	Furthermore, we identified a molybdate transporter gene OsMOT1;1 as the putative causal gene for a QTL controlling molybdenum concentration in both straw and grain
OsMOT1;2	Os01g0645900	LOC_Os01g45830	leaf	Tonoplast-Localized OsMOT1;2 Participates in Interorgan Molybdate Distribution in Rice.	 At the reproductive growth stage of the WT plant, OsMOT1;2 was highly expressed in the 2nd and lower leaf blades and nodes
OsMOT1;2	Os01g0645900	LOC_Os01g45830	leaf	Tonoplast-Localized OsMOT1;2 Participates in Interorgan Molybdate Distribution in Rice.	 The deletion of OsMOT1;2 impaired interorgan Mo allocation in aerial parts: relative to the WT, the mutant exhibited decreased Mo levels in the 1st and 2nd leaf blades and grains but increased Mo levels in the 2nd and lower leaf sheaths, nodes and internodes
OsMOT1;2	Os01g0645900	LOC_Os01g45830	growth	Tonoplast-Localized OsMOT1;2 Participates in Interorgan Molybdate Distribution in Rice.	 At the reproductive growth stage of the WT plant, OsMOT1;2 was highly expressed in the 2nd and lower leaf blades and nodes
OsMOT1;2	Os01g0645900	LOC_Os01g45830	reproductive	Tonoplast-Localized OsMOT1;2 Participates in Interorgan Molybdate Distribution in Rice.	 At the reproductive growth stage of the WT plant, OsMOT1;2 was highly expressed in the 2nd and lower leaf blades and nodes
OsMOT1;2	Os01g0645900	LOC_Os01g45830	reproductive growth	Tonoplast-Localized OsMOT1;2 Participates in Interorgan Molybdate Distribution in Rice.	 At the reproductive growth stage of the WT plant, OsMOT1;2 was highly expressed in the 2nd and lower leaf blades and nodes
OsMOT1;2	Os01g0645900	LOC_Os01g45830	leaf	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice.	 OsMOT1;2 was highly expressed in the blades of the flag leaf and the second leaf during the grain filling stage
OsMOT1;2	Os01g0645900	LOC_Os01g45830	grain	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice.	 OsMOT1;2 was highly expressed in the blades of the flag leaf and the second leaf during the grain filling stage
OsMOT1;2	Os01g0645900	LOC_Os01g45830	seedling	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice.	 Knockout of OsMOT1;2 led to more Mo accumulation in roots and less Mo translocation to shoots at the seedling stage and to grains at the maturity stage
OsMOT1;2	Os01g0645900	LOC_Os01g45830	seedling	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice.	 In contrast, overexpression of OsMOT1;2 enhanced the translocation of Mo from roots to shoots at the seedling stage
OsMOT1;2	Os01g0645900	LOC_Os01g45830	grain filling	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice.	 OsMOT1;2 was highly expressed in the blades of the flag leaf and the second leaf during the grain filling stage
OsMOT1;2	Os01g0645900	LOC_Os01g45830	transporter	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice.	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice.
OsMOT1;2	Os01g0645900	LOC_Os01g45830	molybdenum remobilization	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	abiotic stress	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	These MPG genes showed differential expression under various abiotic stresses with two genes (OsMPG1 and 3) showing high induction in response to multiple stresses
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salinity	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Functional validation of OsMPG1 carried out by overexpression in the transgenic tobacco revealed its involvement in enhancing salinity stress tolerance
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salinity	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salinity stress	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Functional validation of OsMPG1 carried out by overexpression in the transgenic tobacco revealed its involvement in enhancing salinity stress tolerance
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salinity stress	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	root	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Analysis of rice microarray data indicated higher expression levels for OsMPG1 in specific tissues such as roots, leaves, shoot apical meristem and different stages of panicle and seed development, thereby indicating its developmental regulation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	shoot apical meristem	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Analysis of rice microarray data indicated higher expression levels for OsMPG1 in specific tissues such as roots, leaves, shoot apical meristem and different stages of panicle and seed development, thereby indicating its developmental regulation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	seed	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Analysis of rice microarray data indicated higher expression levels for OsMPG1 in specific tissues such as roots, leaves, shoot apical meristem and different stages of panicle and seed development, thereby indicating its developmental regulation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	shoot	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Analysis of rice microarray data indicated higher expression levels for OsMPG1 in specific tissues such as roots, leaves, shoot apical meristem and different stages of panicle and seed development, thereby indicating its developmental regulation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	panicle	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Analysis of rice microarray data indicated higher expression levels for OsMPG1 in specific tissues such as roots, leaves, shoot apical meristem and different stages of panicle and seed development, thereby indicating its developmental regulation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	meristem	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Analysis of rice microarray data indicated higher expression levels for OsMPG1 in specific tissues such as roots, leaves, shoot apical meristem and different stages of panicle and seed development, thereby indicating its developmental regulation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	seed development	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response	Analysis of rice microarray data indicated higher expression levels for OsMPG1 in specific tissues such as roots, leaves, shoot apical meristem and different stages of panicle and seed development, thereby indicating its developmental regulation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	pyrophosphorylase	Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis.	Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis.
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	grain	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Intriguingly, grain yield of OsVTC1-1 RNAi rice was also significantly reduced under salt stress, indicating that OsVTC1-1 plays an important role in salt tolerance of rice at both seedling and reproductive stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	seedling	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	seedling	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Intriguingly, grain yield of OsVTC1-1 RNAi rice was also significantly reduced under salt stress, indicating that OsVTC1-1 plays an important role in salt tolerance of rice at both seedling and reproductive stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Studies have shown that heterologous expression of rice GMPase OsVTC1-1  enhanced salt tolerance of tobacco seedlings, but the native role of OsVTC1-1 in  salt stress tolerance of rice is unknown
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	To illustrate the native function of GMPase in response of rice to salt stress, OsVTC1-1 expression was suppressed using RNAi-mediated gene silencing
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Suppressing OsVTC1-1 expression obviously decreased salt tolerance of rice varieties at vegetative stage
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Intriguingly, grain yield of OsVTC1-1 RNAi rice was also significantly reduced under salt stress, indicating that OsVTC1-1 plays an important role in salt tolerance of rice at both seedling and reproductive stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	OsVTC1-1 RNAi rice accumulated more ROS under salt stress, and supplying exogenous ascorbic acid restored salt tolerance of OsVTC1-1 RNAi lines, suggesting that OsVTC1-1 is involved in salt tolerance of rice through the biosynthesis regulation of ascorbic acid
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Altogether, results of present study showed that rice GMPase gene OsVTC1-1 plays  a critical role in salt tolerance of rice at both vegetative and reproductive stages through AsA scavenging of excess ROS
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Studies have shown that heterologous expression of rice GMPase OsVTC1-1  enhanced salt tolerance of tobacco seedlings, but the native role of OsVTC1-1 in  salt stress tolerance of rice is unknown
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Suppressing OsVTC1-1 expression obviously decreased salt tolerance of rice varieties at vegetative stage
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Intriguingly, grain yield of OsVTC1-1 RNAi rice was also significantly reduced under salt stress, indicating that OsVTC1-1 plays an important role in salt tolerance of rice at both seedling and reproductive stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	OsVTC1-1 RNAi rice accumulated more ROS under salt stress, and supplying exogenous ascorbic acid restored salt tolerance of OsVTC1-1 RNAi lines, suggesting that OsVTC1-1 is involved in salt tolerance of rice through the biosynthesis regulation of ascorbic acid
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Altogether, results of present study showed that rice GMPase gene OsVTC1-1 plays  a critical role in salt tolerance of rice at both vegetative and reproductive stages through AsA scavenging of excess ROS
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	grain yield	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Intriguingly, grain yield of OsVTC1-1 RNAi rice was also significantly reduced under salt stress, indicating that OsVTC1-1 plays an important role in salt tolerance of rice at both seedling and reproductive stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	yield	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Intriguingly, grain yield of OsVTC1-1 RNAi rice was also significantly reduced under salt stress, indicating that OsVTC1-1 plays an important role in salt tolerance of rice at both seedling and reproductive stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	vegetative	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Suppressing OsVTC1-1 expression obviously decreased salt tolerance of rice varieties at vegetative stage
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	vegetative	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Altogether, results of present study showed that rice GMPase gene OsVTC1-1 plays  a critical role in salt tolerance of rice at both vegetative and reproductive stages through AsA scavenging of excess ROS
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Studies have shown that heterologous expression of rice GMPase OsVTC1-1  enhanced salt tolerance of tobacco seedlings, but the native role of OsVTC1-1 in  salt stress tolerance of rice is unknown
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Suppressing OsVTC1-1 expression obviously decreased salt tolerance of rice varieties at vegetative stage
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Intriguingly, grain yield of OsVTC1-1 RNAi rice was also significantly reduced under salt stress, indicating that OsVTC1-1 plays an important role in salt tolerance of rice at both seedling and reproductive stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	OsVTC1-1 RNAi rice accumulated more ROS under salt stress, and supplying exogenous ascorbic acid restored salt tolerance of OsVTC1-1 RNAi lines, suggesting that OsVTC1-1 is involved in salt tolerance of rice through the biosynthesis regulation of ascorbic acid
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Altogether, results of present study showed that rice GMPase gene OsVTC1-1 plays  a critical role in salt tolerance of rice at both vegetative and reproductive stages through AsA scavenging of excess ROS
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt stress	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Studies have shown that heterologous expression of rice GMPase OsVTC1-1  enhanced salt tolerance of tobacco seedlings, but the native role of OsVTC1-1 in  salt stress tolerance of rice is unknown
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt stress	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	To illustrate the native function of GMPase in response of rice to salt stress, OsVTC1-1 expression was suppressed using RNAi-mediated gene silencing
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt stress	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Intriguingly, grain yield of OsVTC1-1 RNAi rice was also significantly reduced under salt stress, indicating that OsVTC1-1 plays an important role in salt tolerance of rice at both seedling and reproductive stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salt stress	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	OsVTC1-1 RNAi rice accumulated more ROS under salt stress, and supplying exogenous ascorbic acid restored salt tolerance of OsVTC1-1 RNAi lines, suggesting that OsVTC1-1 is involved in salt tolerance of rice through the biosynthesis regulation of ascorbic acid
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	reproductive	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	reproductive	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Intriguingly, grain yield of OsVTC1-1 RNAi rice was also significantly reduced under salt stress, indicating that OsVTC1-1 plays an important role in salt tolerance of rice at both seedling and reproductive stages
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	reproductive	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Altogether, results of present study showed that rice GMPase gene OsVTC1-1 plays  a critical role in salt tolerance of rice at both vegetative and reproductive stages through AsA scavenging of excess ROS
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	stress	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Studies have shown that heterologous expression of rice GMPase OsVTC1-1  enhanced salt tolerance of tobacco seedlings, but the native role of OsVTC1-1 in  salt stress tolerance of rice is unknown
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	stress tolerance	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases Salt Tolerance of  Rice at Seedling and Reproductive Stages	Studies have shown that heterologous expression of rice GMPase OsVTC1-1  enhanced salt tolerance of tobacco seedlings, but the native role of OsVTC1-1 in  salt stress tolerance of rice is unknown
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	resistance	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	resistance	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 These results suggest that the OsVTC1-1 gene regulates rice blast resistance through several defense mechanisms, including hormone synthesis and signaling pathways
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	defense response	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	defense response	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 Genes and proteins related to defense response, plant hormone synthesis, and signaling pathways, especially salicylic acid and jasmonic acid, were up-regulated in the OsVTC1-1 RNAi lines after rice blast inoculation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	defense	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	defense	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 Genes and proteins related to defense response, plant hormone synthesis, and signaling pathways, especially salicylic acid and jasmonic acid, were up-regulated in the OsVTC1-1 RNAi lines after rice blast inoculation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	defense	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 These results suggest that the OsVTC1-1 gene regulates rice blast resistance through several defense mechanisms, including hormone synthesis and signaling pathways
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	salicylic acid	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 Genes and proteins related to defense response, plant hormone synthesis, and signaling pathways, especially salicylic acid and jasmonic acid, were up-regulated in the OsVTC1-1 RNAi lines after rice blast inoculation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	blast	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 Using OsVTC1-1 RNAi lines, this study investigated the role of the OsVTC1-1 gene during rice blast fungus inoculation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	blast	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 The OsVTC1-1 RNAi inoculated with rice blast fungus induced changes to cell wall monosaccharides, photosynthetic efficiency, reactive oxygen species (ROS) accumulation, and malondialdehyde (MDA) content
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	blast	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 Additionally, the OsVTC1-1 RNAi lines were shown to be more resistant to rice blast fungus than the wild type
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	blast	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 Genes and proteins related to defense response, plant hormone synthesis, and signaling pathways, especially salicylic acid and jasmonic acid, were up-regulated in the OsVTC1-1 RNAi lines after rice blast inoculation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	blast	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 These results suggest that the OsVTC1-1 gene regulates rice blast resistance through several defense mechanisms, including hormone synthesis and signaling pathways
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	magnaporthe oryzae	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	blast resistance	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 These results suggest that the OsVTC1-1 gene regulates rice blast resistance through several defense mechanisms, including hormone synthesis and signaling pathways
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	cell wall	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 The OsVTC1-1 RNAi inoculated with rice blast fungus induced changes to cell wall monosaccharides, photosynthetic efficiency, reactive oxygen species (ROS) accumulation, and malondialdehyde (MDA) content
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	jasmonic	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 Genes and proteins related to defense response, plant hormone synthesis, and signaling pathways, especially salicylic acid and jasmonic acid, were up-regulated in the OsVTC1-1 RNAi lines after rice blast inoculation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	jasmonic acid	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 Genes and proteins related to defense response, plant hormone synthesis, and signaling pathways, especially salicylic acid and jasmonic acid, were up-regulated in the OsVTC1-1 RNAi lines after rice blast inoculation
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	resistant	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 Additionally, the OsVTC1-1 RNAi lines were shown to be more resistant to rice blast fungus than the wild type
OsMPG1|OsVTC1-1	Os01g0847200	LOC_Os01g62840	reactive oxygen species	OsVTC1-1 Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to Magnaporthe oryzae.	 The OsVTC1-1 RNAi inoculated with rice blast fungus induced changes to cell wall monosaccharides, photosynthetic efficiency, reactive oxygen species (ROS) accumulation, and malondialdehyde (MDA) content
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	transcription factor	OsMPH1 regulates plant height and improves grain yield in rice.	Using a large-scale hybrid transcription factor approach, we identified the novel MYB-like transcription factor OsMPH1 (MYB-like gene of Plant Height 1), which is involved in the regulation of plant height in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	grain	OsMPH1 regulates plant height and improves grain yield in rice.	OsMPH1 regulates plant height and improves grain yield in rice.
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	grain	OsMPH1 regulates plant height and improves grain yield in rice.	Overexpression of OsMPH1 leads to increases of plant height and grain yield in rice, while knockdown of OsMPH1 leads to the opposite phenotypes
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	grain yield	OsMPH1 regulates plant height and improves grain yield in rice.	OsMPH1 regulates plant height and improves grain yield in rice.
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	grain yield	OsMPH1 regulates plant height and improves grain yield in rice.	Overexpression of OsMPH1 leads to increases of plant height and grain yield in rice, while knockdown of OsMPH1 leads to the opposite phenotypes
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	yield	OsMPH1 regulates plant height and improves grain yield in rice.	OsMPH1 regulates plant height and improves grain yield in rice.
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	yield	OsMPH1 regulates plant height and improves grain yield in rice.	Overexpression of OsMPH1 leads to increases of plant height and grain yield in rice, while knockdown of OsMPH1 leads to the opposite phenotypes
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	yield	OsMPH1 regulates plant height and improves grain yield in rice.	These results imply that OsMPH1 might be involved in specific recognition and signal transduction processes related to plant height and yield formation, providing further insights into the mechanisms underlying the regulation of plant height and providing a candidate gene for the efficient improvement of rice yield
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	height	OsMPH1 regulates plant height and improves grain yield in rice.	OsMPH1 regulates plant height and improves grain yield in rice.
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	height	OsMPH1 regulates plant height and improves grain yield in rice.	Using a large-scale hybrid transcription factor approach, we identified the novel MYB-like transcription factor OsMPH1 (MYB-like gene of Plant Height 1), which is involved in the regulation of plant height in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	height	OsMPH1 regulates plant height and improves grain yield in rice.	Overexpression of OsMPH1 leads to increases of plant height and grain yield in rice, while knockdown of OsMPH1 leads to the opposite phenotypes
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	height	OsMPH1 regulates plant height and improves grain yield in rice.	These results imply that OsMPH1 might be involved in specific recognition and signal transduction processes related to plant height and yield formation, providing further insights into the mechanisms underlying the regulation of plant height and providing a candidate gene for the efficient improvement of rice yield
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	plant height	OsMPH1 regulates plant height and improves grain yield in rice.	OsMPH1 regulates plant height and improves grain yield in rice.
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	plant height	OsMPH1 regulates plant height and improves grain yield in rice.	Using a large-scale hybrid transcription factor approach, we identified the novel MYB-like transcription factor OsMPH1 (MYB-like gene of Plant Height 1), which is involved in the regulation of plant height in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	plant height	OsMPH1 regulates plant height and improves grain yield in rice.	Overexpression of OsMPH1 leads to increases of plant height and grain yield in rice, while knockdown of OsMPH1 leads to the opposite phenotypes
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	plant height	OsMPH1 regulates plant height and improves grain yield in rice.	These results imply that OsMPH1 might be involved in specific recognition and signal transduction processes related to plant height and yield formation, providing further insights into the mechanisms underlying the regulation of plant height and providing a candidate gene for the efficient improvement of rice yield
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	transcription factor	OsMYB45 plays an important role in rice resistance to cadmium stress	Here, we report that a transcription factor OsMYB45 is involved in Cd stress response in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	resistance	OsMYB45 plays an important role in rice resistance to cadmium stress	OsMYB45 plays an important role in rice resistance to cadmium stress
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	tolerance	OsMYB45 plays an important role in rice resistance to cadmium stress	Taken together, OsMYB45 plays an important role in tolerance to Cd stress in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	stress	OsMYB45 plays an important role in rice resistance to cadmium stress	OsMYB45 plays an important role in rice resistance to cadmium stress
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	stress	OsMYB45 plays an important role in rice resistance to cadmium stress	Here, we report that a transcription factor OsMYB45 is involved in Cd stress response in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	stress	OsMYB45 plays an important role in rice resistance to cadmium stress	OsMYB45 is highly expressed in rice leaves, husks, stamens, pistils, and lateral roots, and its expression is induced by Cd stress
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	stress	OsMYB45 plays an important role in rice resistance to cadmium stress	Taken together, OsMYB45 plays an important role in tolerance to Cd stress in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	nucleus	OsMYB45 plays an important role in rice resistance to cadmium stress	OsMYB45 fused to green fluorescent protein localized to the cell nucleus in onion epidermal cells
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	lateral root	OsMYB45 plays an important role in rice resistance to cadmium stress	OsMYB45 is highly expressed in rice leaves, husks, stamens, pistils, and lateral roots, and its expression is induced by Cd stress
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	cadmium	OsMYB45 plays an important role in rice resistance to cadmium stress	OsMYB45 plays an important role in rice resistance to cadmium stress
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	stress response	OsMYB45 plays an important role in rice resistance to cadmium stress	Here, we report that a transcription factor OsMYB45 is involved in Cd stress response in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	transcription factor	OsMYB45 plays an important role in rice resistance to cadmium stress.	Here, we report that a transcription factor OsMYB45 is involved in Cd stress response in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	resistance	OsMYB45 plays an important role in rice resistance to cadmium stress.	OsMYB45 plays an important role in rice resistance to cadmium stress.
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	tolerance	OsMYB45 plays an important role in rice resistance to cadmium stress.	Taken together, OsMYB45 plays an important role in tolerance to Cd stress in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	stress	OsMYB45 plays an important role in rice resistance to cadmium stress.	Here, we report that a transcription factor OsMYB45 is involved in Cd stress response in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	stress	OsMYB45 plays an important role in rice resistance to cadmium stress.	OsMYB45 is highly expressed in rice leaves, husks, stamens, pistils, and lateral roots, and its expression is induced by Cd stress
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	stress	OsMYB45 plays an important role in rice resistance to cadmium stress.	Taken together, OsMYB45 plays an important role in tolerance to Cd stress in rice
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	nucleus	OsMYB45 plays an important role in rice resistance to cadmium stress.	OsMYB45 fused to green fluorescent protein localized to the cell nucleus in onion epidermal cells
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	lateral root	OsMYB45 plays an important role in rice resistance to cadmium stress.	OsMYB45 is highly expressed in rice leaves, husks, stamens, pistils, and lateral roots, and its expression is induced by Cd stress
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	cadmium	OsMYB45 plays an important role in rice resistance to cadmium stress.	OsMYB45 plays an important role in rice resistance to cadmium stress.
OsMPH1|OsMYB45	Os06g0670300	LOC_Os06g45890	stress response	OsMYB45 plays an important role in rice resistance to cadmium stress.	Here, we report that a transcription factor OsMYB45 is involved in Cd stress response in rice
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	 ABA 	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	Nipponbare) C(2) H(2) -type ZFP ZFP182 in ABA-induced antioxidant defense and the relationship between ZFP182 and two rice MAPKs, OsMPK1 and OsMPK5 in ABA signaling were investigated
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	 ABA 	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	ABA treatment induced the increases in the expression of ZFP182, OsMPK1 and OsMPK5, and the activities of superoxide dismutase (SOD) and ascorbate peroxidase (APX) in rice leaves
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	 ABA 	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	Besides, OsMPK1 and OsMPK5 were shown to be required for the up-regulation in the expression of ZFP182 in ABA signaling, but ZFP182 did not mediate the ABA-induced up-regulation in the expression of OsMPK1 and OsMPK5
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	defense	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	Nipponbare) C(2) H(2) -type ZFP ZFP182 in ABA-induced antioxidant defense and the relationship between ZFP182 and two rice MAPKs, OsMPK1 and OsMPK5 in ABA signaling were investigated
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	cold stress	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level	A time course (30-120 min) experiment using a variety of elicitors and stresses revealed that the OsSIPK mRNA is strongly induced by jasmonic acid (JA), salicylic acid (SA), ethephon, abscisic acid, cycloheximide (CHX), JA/SA + CHX, cantharidin, okadaic acid, hydrogen peroxide, chitosan, sodium chloride, and cold stress (12 degrees C), but not with wounding by cut, gaseous pollutants ozone, and sulfur dioxide, high temperature, ultraviolet C irradiation, sucrose, and drought
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	jasmonic acid	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level	A time course (30-120 min) experiment using a variety of elicitors and stresses revealed that the OsSIPK mRNA is strongly induced by jasmonic acid (JA), salicylic acid (SA), ethephon, abscisic acid, cycloheximide (CHX), JA/SA + CHX, cantharidin, okadaic acid, hydrogen peroxide, chitosan, sodium chloride, and cold stress (12 degrees C), but not with wounding by cut, gaseous pollutants ozone, and sulfur dioxide, high temperature, ultraviolet C irradiation, sucrose, and drought
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	 ABA 	OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice	ABA treatment induced the expression of OsDMI3 and OsMPK1 and the activities of OsDMI3 and OsMPK1 in rice leaves
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	 ABA 	OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice	Our data indicate that there exists a cross-talk between OsDMI3 and OsMPK1 in ABA signalling, in which OsDMI3 functions upstream of OsMPK1 to regulate the activities of antioxidant enzymes and the production of H2 O2 in rice
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	jasmonic	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level	A time course (30-120 min) experiment using a variety of elicitors and stresses revealed that the OsSIPK mRNA is strongly induced by jasmonic acid (JA), salicylic acid (SA), ethephon, abscisic acid, cycloheximide (CHX), JA/SA + CHX, cantharidin, okadaic acid, hydrogen peroxide, chitosan, sodium chloride, and cold stress (12 degrees C), but not with wounding by cut, gaseous pollutants ozone, and sulfur dioxide, high temperature, ultraviolet C irradiation, sucrose, and drought
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	salicylic acid	Rice OsSIPK and its orthologs: a central master switch for stress responses	Of these, rice OsSIPK (Salicylic acid (SA)-Induced Protein Kinase) and its orthologs in other plants are of particular interest
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	temperature	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level	A time course (30-120 min) experiment using a variety of elicitors and stresses revealed that the OsSIPK mRNA is strongly induced by jasmonic acid (JA), salicylic acid (SA), ethephon, abscisic acid, cycloheximide (CHX), JA/SA + CHX, cantharidin, okadaic acid, hydrogen peroxide, chitosan, sodium chloride, and cold stress (12 degrees C), but not with wounding by cut, gaseous pollutants ozone, and sulfur dioxide, high temperature, ultraviolet C irradiation, sucrose, and drought
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	drought	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level	A time course (30-120 min) experiment using a variety of elicitors and stresses revealed that the OsSIPK mRNA is strongly induced by jasmonic acid (JA), salicylic acid (SA), ethephon, abscisic acid, cycloheximide (CHX), JA/SA + CHX, cantharidin, okadaic acid, hydrogen peroxide, chitosan, sodium chloride, and cold stress (12 degrees C), but not with wounding by cut, gaseous pollutants ozone, and sulfur dioxide, high temperature, ultraviolet C irradiation, sucrose, and drought
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	salicylic acid	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level	) mitogen-activated protein kinase (MAPK), OsSIPK (salicylic acid-induced protein kinase)
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	salicylic acid	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level	A time course (30-120 min) experiment using a variety of elicitors and stresses revealed that the OsSIPK mRNA is strongly induced by jasmonic acid (JA), salicylic acid (SA), ethephon, abscisic acid, cycloheximide (CHX), JA/SA + CHX, cantharidin, okadaic acid, hydrogen peroxide, chitosan, sodium chloride, and cold stress (12 degrees C), but not with wounding by cut, gaseous pollutants ozone, and sulfur dioxide, high temperature, ultraviolet C irradiation, sucrose, and drought
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	seedling	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level	Steady state mRNA analyses of OsSIPK showed weak constitutive expression in leaves of 2-week-old rice seedlings
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	 ja 	Rice OsSIPK and its orthologs: a central master switch for stress responses	In this minireview, we discuss the recent progress on rice OsSIPK and its orthologs as a central master switch for mediating plant responses against ozone, wounding, and JA as examples
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	wounding response	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	abiotic stress	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice	Taken together, components involving in the wounding signaling pathway, OsMKK4-OsMPK1-OsWRKY53, can be important players in regulating crosstalk between abiotic stress and biotic stress.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	biotic stress	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice	Taken together, components involving in the wounding signaling pathway, OsMKK4-OsMPK1-OsWRKY53, can be important players in regulating crosstalk between abiotic stress and biotic stress.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	grain size	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	protein kinase	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	biomass production	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	biomass	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	cell proliferation	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production	Thus, OsMAPK6, a mitogen-activated protein kinase, plays a pivotal role in grain size, via cell proliferation, and BR signaling and homeostasis, in  rice.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	BR signaling	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production	Thus, OsMAPK6, a mitogen-activated protein kinase, plays a pivotal role in grain size, via cell proliferation, and BR signaling and homeostasis, in  rice.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	BR homeostasis	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production	Thus, OsMAPK6, a mitogen-activated protein kinase, plays a pivotal role in grain size, via cell proliferation, and BR signaling and homeostasis, in  rice.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	grain	Control of grain size and weight by the OsMKKK10-OsMKK4-OsMAPK6 signaling pathway in rice.	 Further biochemical and genetic analyses reveal that OsMKKK10, OsMKK4 and OsMAPK6 function in a common pathway to control grain size
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	grain size	Control of grain size and weight by the OsMKKK10-OsMKK4-OsMAPK6 signaling pathway in rice.	 Further biochemical and genetic analyses reveal that OsMKKK10, OsMKK4 and OsMAPK6 function in a common pathway to control grain size
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	defense	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	defense	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	 Furthermore, bip130 can be phosphorylated by OsMPK1 at Thr-153 in vitro, and Thr-153 is essential for the ABA-induced antioxidant defense by OsMPK1
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	defense	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	 These results reveal that OsMPK1 phosphorylates bip130 at Thr-153 to regulate ABA-induced antioxidant defense
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	abscisic acid	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	transcription factor	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 The OsMPK1:GFP and OsWRKY90:GFP transcription factor were localized to the nuclei, suggesting that OsMPK1 in the cytoplasm moves into the nuclei to interact with the WRKY90
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	disease	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 These combined results suggest that OsMEK2 and OsMPK1 expression positively regulates iron- and ROS-dependent ferroptotic cell death, and blast disease (susceptibility)-related cell death was ROS-dependent but iron-independent in rice-M
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	blast	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 These combined results suggest that OsMEK2 and OsMPK1 expression positively regulates iron- and ROS-dependent ferroptotic cell death, and blast disease (susceptibility)-related cell death was ROS-dependent but iron-independent in rice-M
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	magnaporthe oryzae	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	cell death	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	cell death	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 These combined results suggest that OsMEK2 and OsMPK1 expression positively regulates iron- and ROS-dependent ferroptotic cell death, and blast disease (susceptibility)-related cell death was ROS-dependent but iron-independent in rice-M
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	cytoplasm	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 The OsMPK1:GFP and OsWRKY90:GFP transcription factor were localized to the nuclei, suggesting that OsMPK1 in the cytoplasm moves into the nuclei to interact with the WRKY90
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	Kinase	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	protein kinase	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	kinase	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	blast disease	Mitogen-Activated Protein Kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice- Magnaporthe oryzae Interactions	 These combined results suggest that OsMEK2 and OsMPK1 expression positively regulates iron- and ROS-dependent ferroptotic cell death, and blast disease (susceptibility)-related cell death was ROS-dependent but iron-independent in rice-M
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	Kinase	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	The mitogen-activated protein kinase OsMPK1 is involved in abscisic acid (ABA) biosynthesis in rice (Oryza sativa L
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	Kinase	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 We also found that OsABA2 has feedback regulation on OsMPK1 kinase activity
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	kinase	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	The mitogen-activated protein kinase OsMPK1 is involved in abscisic acid (ABA) biosynthesis in rice (Oryza sativa L
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	kinase	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 We also found that OsABA2 has feedback regulation on OsMPK1 kinase activity
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	ABA	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 However, the underlying molecular mechanisms of OsMPK1 in regulating ABA biosynthesis are poorly understood
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	ABA	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Further research reveals that OsMPK1 and OsABA2 coordinately regulate the biosynthesis of ABA, and phosphorylation of OsABA2 at Ser197 by OsMPK1 plays a crucial role in regulating the biosynthesis of ABA
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	abscisic acid	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	abscisic acid	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	The mitogen-activated protein kinase OsMPK1 is involved in abscisic acid (ABA) biosynthesis in rice (Oryza sativa L
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	protein kinase	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	The mitogen-activated protein kinase OsMPK1 is involved in abscisic acid (ABA) biosynthesis in rice (Oryza sativa L
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	ABA biosynthesis	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 However, the underlying molecular mechanisms of OsMPK1 in regulating ABA biosynthesis are poorly understood
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	dehydrogenase	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 Here, by using yeast two-hybrid assay and firefly luciferase complementary imaging assay, we show that OsMPK1 physically interact with a short-chain dehydrogenase protein OsABA2
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	 ABA 	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	 However, the underlying molecular mechanisms of OsMPK1 in regulating ABA biosynthesis are poorly understood
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	abscisic acid biosynthesis	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	leaf	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	resistance	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	resistance	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 OsMAPK6 physically interacted with and phosphorylated OsLIC leading to decreased OsLIC DNA-binding activity, therefore, overexpression of OsLIC partially suppressed OsMAPK6-mediated rice resistance
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	blight	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	bacterial blight	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	R protein	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsMPK1|OsMAPK6|OsSIPK	Os06g0154500	LOC_Os06g06090	zinc	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsMPK11|OsMAPK11	Os06g0367900	LOC_Os06g26340	Kinase	OsMYB57 transcriptionally regulates OsMAPK11 to interact with OsPAL2;3 and modulate rice allelopathy.	Chromatin immunoprecipitation incorporated with HiSeq demonstrated that OsMYB57 transcriptionally regulated a mitogen-activated protein kinase (OsMAPK11); in addition, OsMAPK11 interacted with OsPAL2;3
OsMPK11|OsMAPK11	Os06g0367900	LOC_Os06g26340	protein kinase	OsMYB57 transcriptionally regulates OsMAPK11 to interact with OsPAL2;3 and modulate rice allelopathy.	Chromatin immunoprecipitation incorporated with HiSeq demonstrated that OsMYB57 transcriptionally regulated a mitogen-activated protein kinase (OsMAPK11); in addition, OsMAPK11 interacted with OsPAL2;3
OsMPK13|OsBIMK2	Os02g0135200	LOC_Os02g04230	seedling	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses	Expression of OsBIMK2 was also up-regulated during early stage after inoculation with MAGNAPORTHE GRISEA in BTH-treated rice seedlings and during an incompatible interaction between M
OsMPK13|OsBIMK2	Os02g0135200	LOC_Os02g04230	disease resistance	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses	Expression of OSBIMK2 was activated upon treatment with benzothiadiazole (BTH), which is capable of inducing disease resistance in rice
OsMPK13|OsBIMK2	Os02g0135200	LOC_Os02g04230	disease resistance	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses	Over-expression of the rice OSBIMK2 gene in transgenic tobacco resulted in an enhanced disease resistance against tomato mosaic virus and a fungal pathogen, ALTERNARIA ALTERNATA
OsMPK13|OsBIMK2	Os02g0135200	LOC_Os02g04230	disease resistance	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses	These results suggest that OSBIMK2 plays a role in disease resistance responses
OsMPK13|OsBIMK2	Os02g0135200	LOC_Os02g04230	disease	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses	Expression of OSBIMK2 was activated upon treatment with benzothiadiazole (BTH), which is capable of inducing disease resistance in rice
OsMPK13|OsBIMK2	Os02g0135200	LOC_Os02g04230	disease	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses	Over-expression of the rice OSBIMK2 gene in transgenic tobacco resulted in an enhanced disease resistance against tomato mosaic virus and a fungal pathogen, ALTERNARIA ALTERNATA
OsMPK13|OsBIMK2	Os02g0135200	LOC_Os02g04230	disease	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses	These results suggest that OSBIMK2 plays a role in disease resistance responses
OsMPK13|OsBIMK2	Os02g0135200	LOC_Os02g04230	disease	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses
OsMPK14	Os05g0143500	LOC_Os05g05160	drought	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	Semi-quantitative RT-PCR was performed to detect the expression patterns of OsMPK14 in rice shoots and roots under darkness, drought, high salinity, low temperature and abscisic acid treatments
OsMPK14	Os05g0143500	LOC_Os05g05160	drought	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	The OsMPK14 mRNA was induced by abscisic acid, low temperature and high salinity, but weakly inhibited by drought
OsMPK14	Os05g0143500	LOC_Os05g05160	temperature	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	Semi-quantitative RT-PCR was performed to detect the expression patterns of OsMPK14 in rice shoots and roots under darkness, drought, high salinity, low temperature and abscisic acid treatments
OsMPK14	Os05g0143500	LOC_Os05g05160	temperature	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	The OsMPK14 mRNA was induced by abscisic acid, low temperature and high salinity, but weakly inhibited by drought
OsMPK14	Os05g0143500	LOC_Os05g05160	root	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	Semi-quantitative RT-PCR was performed to detect the expression patterns of OsMPK14 in rice shoots and roots under darkness, drought, high salinity, low temperature and abscisic acid treatments
OsMPK14	Os05g0143500	LOC_Os05g05160	root	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	In addition, the expression of OsMPK14 was up-regulated in roots, but down-regulated in shoots by light
OsMPK14	Os05g0143500	LOC_Os05g05160	salinity	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	Semi-quantitative RT-PCR was performed to detect the expression patterns of OsMPK14 in rice shoots and roots under darkness, drought, high salinity, low temperature and abscisic acid treatments
OsMPK14	Os05g0143500	LOC_Os05g05160	salinity	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	The OsMPK14 mRNA was induced by abscisic acid, low temperature and high salinity, but weakly inhibited by drought
OsMPK14	Os05g0143500	LOC_Os05g05160	shoot	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	Semi-quantitative RT-PCR was performed to detect the expression patterns of OsMPK14 in rice shoots and roots under darkness, drought, high salinity, low temperature and abscisic acid treatments
OsMPK14	Os05g0143500	LOC_Os05g05160	shoot	Cloning and Expression Analysis of a Mitogen-Activated Protein Kinase Gene OsMPK14 in Rice	In addition, the expression of OsMPK14 was up-regulated in roots, but down-regulated in shoots by light
OsMPK15	Os11g0271100	LOC_Os11g17080	resistance	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.
OsMPK15	Os11g0271100	LOC_Os11g17080	resistance	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	In this article, to characterize the mechanisms, the knock-out and overexpression mutants of OsMPK15 were constructed and the disease resistance was investigated under the various fungal and bacterial inoculations
OsMPK15	Os11g0271100	LOC_Os11g17080	resistance	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The knock-out mutant of OsMPK15 resulted in the constitutive expression of pathogenesis-related (PR) genes, increased accumulation of reactive oxygen species (ROS) triggered by the pathogen-associated molecular pattern (PAMP) elicitor chitin, and significantly enhanced the disease resistance to different races of Magnaporthe oryzae and Xanthomonas oryzae pv
OsMPK15	Os11g0271100	LOC_Os11g17080	resistance	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	We conclude that OsMPK15 may negatively regulate the disease resistance through modulating SA- and JA-mediated signaling pathway
OsMPK15	Os11g0271100	LOC_Os11g17080	disease	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.
OsMPK15	Os11g0271100	LOC_Os11g17080	disease	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	In this article, to characterize the mechanisms, the knock-out and overexpression mutants of OsMPK15 were constructed and the disease resistance was investigated under the various fungal and bacterial inoculations
OsMPK15	Os11g0271100	LOC_Os11g17080	disease	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The knock-out mutant of OsMPK15 resulted in the constitutive expression of pathogenesis-related (PR) genes, increased accumulation of reactive oxygen species (ROS) triggered by the pathogen-associated molecular pattern (PAMP) elicitor chitin, and significantly enhanced the disease resistance to different races of Magnaporthe oryzae and Xanthomonas oryzae pv
OsMPK15	Os11g0271100	LOC_Os11g17080	disease	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	We conclude that OsMPK15 may negatively regulate the disease resistance through modulating SA- and JA-mediated signaling pathway
OsMPK15	Os11g0271100	LOC_Os11g17080	disease resistance	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.
OsMPK15	Os11g0271100	LOC_Os11g17080	disease resistance	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	In this article, to characterize the mechanisms, the knock-out and overexpression mutants of OsMPK15 were constructed and the disease resistance was investigated under the various fungal and bacterial inoculations
OsMPK15	Os11g0271100	LOC_Os11g17080	disease resistance	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The knock-out mutant of OsMPK15 resulted in the constitutive expression of pathogenesis-related (PR) genes, increased accumulation of reactive oxygen species (ROS) triggered by the pathogen-associated molecular pattern (PAMP) elicitor chitin, and significantly enhanced the disease resistance to different races of Magnaporthe oryzae and Xanthomonas oryzae pv
OsMPK15	Os11g0271100	LOC_Os11g17080	disease resistance	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	We conclude that OsMPK15 may negatively regulate the disease resistance through modulating SA- and JA-mediated signaling pathway
OsMPK15	Os11g0271100	LOC_Os11g17080	magnaporthe oryzae	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The knock-out mutant of OsMPK15 resulted in the constitutive expression of pathogenesis-related (PR) genes, increased accumulation of reactive oxygen species (ROS) triggered by the pathogen-associated molecular pattern (PAMP) elicitor chitin, and significantly enhanced the disease resistance to different races of Magnaporthe oryzae and Xanthomonas oryzae pv
OsMPK15	Os11g0271100	LOC_Os11g17080	xoo	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.
OsMPK15	Os11g0271100	LOC_Os11g17080	ja	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.
OsMPK15	Os11g0271100	LOC_Os11g17080	JA	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.
OsMPK15	Os11g0271100	LOC_Os11g17080	sa	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.
OsMPK15	Os11g0271100	LOC_Os11g17080	SA	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.
OsMPK15	Os11g0271100	LOC_Os11g17080	reactive oxygen species	The OsMPK15 Negatively Regulates Magnaporthe oryza and Xoo Disease Resistance via SA and JA Signaling Pathway in Rice.	The knock-out mutant of OsMPK15 resulted in the constitutive expression of pathogenesis-related (PR) genes, increased accumulation of reactive oxygen species (ROS) triggered by the pathogen-associated molecular pattern (PAMP) elicitor chitin, and significantly enhanced the disease resistance to different races of Magnaporthe oryzae and Xanthomonas oryzae pv
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	seedling	Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice	An MBP (myelin basic protein) kinase assay of the immunoprecipitation complex indicated that OsMPK3 and OsMPK6 were activated in response to a moderately low temperature (12 degrees C), but not a severely low temperature (4 degrees C) in rice seedlings
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	jasmonic	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae	Activation of OsMPK6 resulted in the formation of lesion mimics and local resistance to Xoo, accompanied by the accumulation of salicylic acid (SA) and jasmonic acid (JA), and the induced expression of SA- and JA-signaling genes
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	defense	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	These results suggest that OsMPK6 functions as a repressor to regulate rice defense responses upon bacterial invasion
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	defense	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae	Nuclear localization of OsMPK6 was essential for local resistance, suggesting that modulating the expression of defense-responsive genes through transcription regulators may be the primary mechanism of OsMPK6-mediated local resistance
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	defense response	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	These results suggest that OsMPK6 functions as a repressor to regulate rice defense responses upon bacterial invasion
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	transcription regulator	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae	Nuclear localization of OsMPK6 was essential for local resistance, suggesting that modulating the expression of defense-responsive genes through transcription regulators may be the primary mechanism of OsMPK6-mediated local resistance
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	salicylic acid	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae	Activation of OsMPK6 resulted in the formation of lesion mimics and local resistance to Xoo, accompanied by the accumulation of salicylic acid (SA) and jasmonic acid (JA), and the induced expression of SA- and JA-signaling genes
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	disease resistance	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	Here we report that OsMPK6 is an important regulator in rice disease resistance
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	disease resistance	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	temperature	Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice	An MBP (myelin basic protein) kinase assay of the immunoprecipitation complex indicated that OsMPK3 and OsMPK6 were activated in response to a moderately low temperature (12 degrees C), but not a severely low temperature (4 degrees C) in rice seedlings
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	 sa 	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae	The knock-out of OsMPK6 resulted in enhanced Xoo resistance, increased accumulation of SA and enhanced resistance to X
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	disease	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	Here we report that OsMPK6 is an important regulator in rice disease resistance
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	disease	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	jasmonic acid	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae	Activation of OsMPK6 resulted in the formation of lesion mimics and local resistance to Xoo, accompanied by the accumulation of salicylic acid (SA) and jasmonic acid (JA), and the induced expression of SA- and JA-signaling genes
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	 xoo 	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae	The knock-out of OsMPK6 resulted in enhanced Xoo resistance, increased accumulation of SA and enhanced resistance to X
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	 xoo 	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae	Xoo infection induced the expression of PR1a, the marker gene of systemic acquired resistance (SAR), in systemic health tissues of OsMPK6-knock-out plants
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	stress	A redox-sensitive cysteine residue regulates the kinase activities of OsMPK3 and OsMPK6 in vitro.	Here, immunoprecipitated OsMPK3 and OsMPK6 were initially activated in 15min, and this activation transiently increased in rice seedlings under H2O2 stress
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	seedlings	A redox-sensitive cysteine residue regulates the kinase activities of OsMPK3 and OsMPK6 in vitro.	Here, immunoprecipitated OsMPK3 and OsMPK6 were initially activated in 15min, and this activation transiently increased in rice seedlings under H2O2 stress
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	Kinase	A redox-sensitive cysteine residue regulates the kinase activities of OsMPK3 and OsMPK6 in vitro.	A redox-sensitive cysteine residue regulates the kinase activities of OsMPK3 and OsMPK6 in vitro.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	 ABA 	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	An ABA treatment dephosphorylated/inactivated OsMPK6 via protein tyrosine phosphatases, OsPTP1/2, leading to the impaired activation of WRKY45 and a reduction in Magnaporthe oryzae resistance, even after BTH treatment
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	magnaporthe oryzae	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	An ABA treatment dephosphorylated/inactivated OsMPK6 via protein tyrosine phosphatases, OsPTP1/2, leading to the impaired activation of WRKY45 and a reduction in Magnaporthe oryzae resistance, even after BTH treatment
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	ABA	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	An ABA treatment dephosphorylated/inactivated OsMPK6 via protein tyrosine phosphatases, OsPTP1/2, leading to the impaired activation of WRKY45 and a reduction in Magnaporthe oryzae resistance, even after BTH treatment
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	resistance	WRKY45 phosphorylation at threonine 266 acts negatively on WRKY45-dependent blast resistance in rice.	WRKY45 is a central regulator of disease resistance mediated by salicylic acid signaling in rice and its activation involves phosphorylation by OsMPK6
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	disease	WRKY45 phosphorylation at threonine 266 acts negatively on WRKY45-dependent blast resistance in rice.	WRKY45 is a central regulator of disease resistance mediated by salicylic acid signaling in rice and its activation involves phosphorylation by OsMPK6
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	salicylic acid	WRKY45 phosphorylation at threonine 266 acts negatively on WRKY45-dependent blast resistance in rice.	WRKY45 is a central regulator of disease resistance mediated by salicylic acid signaling in rice and its activation involves phosphorylation by OsMPK6
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	disease resistance	WRKY45 phosphorylation at threonine 266 acts negatively on WRKY45-dependent blast resistance in rice.	WRKY45 is a central regulator of disease resistance mediated by salicylic acid signaling in rice and its activation involves phosphorylation by OsMPK6
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	stem	Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis.	Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	growth	Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis.	Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	resistance	Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis.	Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	ethylene	Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis.	 The overexpression of OsMPK4 (oe-MPK4) enhanced constitutive and/or SSB-induced levels of JA, jasmonoyl-l-isoleucine (JA-Ile), ethylene (ET), and SA, as well as the activity of elicited trypsin proteinase inhibitors (TrypPIs), and reduced SSB performance
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	plant growth	Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis.	Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	resistance	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 Using transgenic plants defective in early signaling, we show that OsMPK3 is required, and that OsMPK6 and OsWRKY70 contribute to indole-mediated defense priming of JA-dependent herbivore resistance
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	defense	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 Using transgenic plants defective in early signaling, we show that OsMPK3 is required, and that OsMPK6 and OsWRKY70 contribute to indole-mediated defense priming of JA-dependent herbivore resistance
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	transcription factor	ERECTA1 Acts Upstream of the OsMKKK10-OsMKK4-OsMPK6 Cascade to Control Spikelet Number by Regulating Cytokinin Metabolism in Rice 	 OsMPK6 directly interacts with and phosphorylates the zinc finger transcription factor DST to enhance its transcriptional activation of CYTOKININ OXIDASE2 (OsCKX2), indicating that the OsER1-OsMKKK10-OsMKK4-OsMPK6 pathway shapes panicle morphology by regulating cytokinin metabolism
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	panicle	ERECTA1 Acts Upstream of the OsMKKK10-OsMKK4-OsMPK6 Cascade to Control Spikelet Number by Regulating Cytokinin Metabolism in Rice 	 OsMPK6 directly interacts with and phosphorylates the zinc finger transcription factor DST to enhance its transcriptional activation of CYTOKININ OXIDASE2 (OsCKX2), indicating that the OsER1-OsMKKK10-OsMKK4-OsMPK6 pathway shapes panicle morphology by regulating cytokinin metabolism
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	spikelet	ERECTA1 Acts Upstream of the OsMKKK10-OsMKK4-OsMPK6 Cascade to Control Spikelet Number by Regulating Cytokinin Metabolism in Rice 	 Furthermore, overexpression of either DST or OsCKX2 rescued the spikelet number phenotype of the oser1, osmkkk10, osmkk4, and osmpk6 mutants, suggesting that the DST-OsCKX2 module genetically functions downstream of the OsER1-OsMKKK10-OsMKK4-OsMPK6 pathway
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	cytokinin	ERECTA1 Acts Upstream of the OsMKKK10-OsMKK4-OsMPK6 Cascade to Control Spikelet Number by Regulating Cytokinin Metabolism in Rice 	 OsMPK6 directly interacts with and phosphorylates the zinc finger transcription factor DST to enhance its transcriptional activation of CYTOKININ OXIDASE2 (OsCKX2), indicating that the OsER1-OsMKKK10-OsMKK4-OsMPK6 pathway shapes panicle morphology by regulating cytokinin metabolism
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	spikelet number	ERECTA1 Acts Upstream of the OsMKKK10-OsMKK4-OsMPK6 Cascade to Control Spikelet Number by Regulating Cytokinin Metabolism in Rice 	 Furthermore, overexpression of either DST or OsCKX2 rescued the spikelet number phenotype of the oser1, osmkkk10, osmkk4, and osmpk6 mutants, suggesting that the DST-OsCKX2 module genetically functions downstream of the OsER1-OsMKKK10-OsMKK4-OsMPK6 pathway
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	zinc	ERECTA1 Acts Upstream of the OsMKKK10-OsMKK4-OsMPK6 Cascade to Control Spikelet Number by Regulating Cytokinin Metabolism in Rice 	 OsMPK6 directly interacts with and phosphorylates the zinc finger transcription factor DST to enhance its transcriptional activation of CYTOKININ OXIDASE2 (OsCKX2), indicating that the OsER1-OsMKKK10-OsMKK4-OsMPK6 pathway shapes panicle morphology by regulating cytokinin metabolism
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	resistance	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	resistance	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Compared with wild type, the osmpk6 mutant exhibited high resistance to the bacterial pathogen Xanthomonas oryzae pv
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	resistance	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 By contrast, the OsMPK6-overexpression line (OE-1) was found to be susceptible to the bacterial pathogens, indicating that OsMPK6 negatively regulated Xoo resistance
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	blight	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	bacterial blight	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	defense	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	The R89 is essential for the kinase activity of OsMPK6 which negatively regulates cell death and defense response in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	defense	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Our findings provide insight into a vital role of the R89 of OsMPK6 in regulating cell death and defense response in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	map-based cloning	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Map-based cloning and complementation demonstrated that a G702A single-base substitution in the second exon of OsMPK6 led to the lesion mimic phenotype of the osmpk6 mutant
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	defense response	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	The R89 is essential for the kinase activity of OsMPK6 which negatively regulates cell death and defense response in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	defense response	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Our findings provide insight into a vital role of the R89 of OsMPK6 in regulating cell death and defense response in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	cell death	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	cell death	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	The R89 is essential for the kinase activity of OsMPK6 which negatively regulates cell death and defense response in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	cell death	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Here, we identified and characterized a rice lesion mimic mutant osmpk6 which displayed hypersensitive response-like lesions in company with cell death and hydrogen peroxide hyperaccumulation
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	cell death	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Our findings provide insight into a vital role of the R89 of OsMPK6 in regulating cell death and defense response in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	pathogen	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Compared with wild type, the osmpk6 mutant exhibited high resistance to the bacterial pathogen Xanthomonas oryzae pv
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	cytoplasm	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 OsMPK6 encodes a cytoplasm and nucleus-targeted mitogen-activated protein kinase and is expressed in the various organs
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	Kinase	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	The R89 is essential for the kinase activity of OsMPK6 which negatively regulates cell death and defense response in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	Kinase	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 OsMPK6 encodes a cytoplasm and nucleus-targeted mitogen-activated protein kinase and is expressed in the various organs
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	Kinase	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Furthermore, the G702A single-base substitution caused a R89K mutation at both polypeptide substrate-binding site and active site of OsMPK6, and kinase activity assay revealed that the R89K mutation led to reduction of OsMPK6 activity, suggesting that the R89 is essential for the function of OsMPK6
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	protein kinase	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 OsMPK6 encodes a cytoplasm and nucleus-targeted mitogen-activated protein kinase and is expressed in the various organs
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	 xoo 	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 By contrast, the OsMPK6-overexpression line (OE-1) was found to be susceptible to the bacterial pathogens, indicating that OsMPK6 negatively regulated Xoo resistance
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	kinase	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	The R89 is essential for the kinase activity of OsMPK6 which negatively regulates cell death and defense response in rice
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	kinase	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 OsMPK6 encodes a cytoplasm and nucleus-targeted mitogen-activated protein kinase and is expressed in the various organs
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	kinase	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Furthermore, the G702A single-base substitution caused a R89K mutation at both polypeptide substrate-binding site and active site of OsMPK6, and kinase activity assay revealed that the R89K mutation led to reduction of OsMPK6 activity, suggesting that the R89 is essential for the function of OsMPK6
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	lesion	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Here, we identified and characterized a rice lesion mimic mutant osmpk6 which displayed hypersensitive response-like lesions in company with cell death and hydrogen peroxide hyperaccumulation
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	lesion	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Map-based cloning and complementation demonstrated that a G702A single-base substitution in the second exon of OsMPK6 led to the lesion mimic phenotype of the osmpk6 mutant
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	lesion mimic	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Here, we identified and characterized a rice lesion mimic mutant osmpk6 which displayed hypersensitive response-like lesions in company with cell death and hydrogen peroxide hyperaccumulation
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	lesion mimic	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice	 Map-based cloning and complementation demonstrated that a G702A single-base substitution in the second exon of OsMPK6 led to the lesion mimic phenotype of the osmpk6 mutant
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	immunity	Ustilaginoidea virens secretes a family of phosphatases that stabilize the negative immune regulator OsMPK6 and suppress plant immunity.	 SCRE6 interacts with and dephosphorylates the negative immune regulator OsMPK6 in rice, thus enhancing its stability and suppressing plant immunity
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	stress	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	salt	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	salt	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	 Under salt stress, OsMPK4 could interact with IPA1 and phosphorylate IPA1 at Thr180, leading to degradation of IPA1
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	salt	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	 Genetic evidence shows that IPA1 is a negative regulator of salt tolerance in rice, whereas OsMPK4 promotes salt response in an IPA1-dependent manner
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	tolerance	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	tolerance	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	 Genetic evidence shows that IPA1 is a negative regulator of salt tolerance in rice, whereas OsMPK4 promotes salt response in an IPA1-dependent manner
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	salt tolerance	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	salt tolerance	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	 Genetic evidence shows that IPA1 is a negative regulator of salt tolerance in rice, whereas OsMPK4 promotes salt response in an IPA1-dependent manner
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	salt stress	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.
OsMPK6|OsMPK4	Os10g0533600	LOC_Os10g38950	salt stress	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	 Under salt stress, OsMPK4 could interact with IPA1 and phosphorylate IPA1 at Thr180, leading to degradation of IPA1
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	resistance	A group D MAPK protects plants from autotoxicity by suppressing herbivore-induced defense signaling.	Expression silencing of OsMAPK20-5 (irMAPK) increased the accumulation of ethylene and nitric oxide (NO) following gravid female BPH infestation, and thereby increased rice plant resistance to BPH adults and oviposited eggs
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	resistance	A group D MAPK protects plants from autotoxicity by suppressing herbivore-induced defense signaling.	Taken together, our study shows that although OsMAPK20-5 can reduce the resistance of rice plants to planthoppers, it also enables rice plants to control excessive defense responses and thereby prevents defense response-related autotoxicity
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	defense	A group D MAPK protects plants from autotoxicity by suppressing herbivore-induced defense signaling.	Taken together, our study shows that although OsMAPK20-5 can reduce the resistance of rice plants to planthoppers, it also enables rice plants to control excessive defense responses and thereby prevents defense response-related autotoxicity
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	ethylene	A group D MAPK protects plants from autotoxicity by suppressing herbivore-induced defense signaling.	Expression silencing of OsMAPK20-5 (irMAPK) increased the accumulation of ethylene and nitric oxide (NO) following gravid female BPH infestation, and thereby increased rice plant resistance to BPH adults and oviposited eggs
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	defense response	A group D MAPK protects plants from autotoxicity by suppressing herbivore-induced defense signaling.	Taken together, our study shows that although OsMAPK20-5 can reduce the resistance of rice plants to planthoppers, it also enables rice plants to control excessive defense responses and thereby prevents defense response-related autotoxicity
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	leaf	Silencing OsMAPK20-5 has different effects on rice pests in the field.	In this context, we observed that silencing OsMAPK20-5 increased the percentage of leaf roll caused by leaf folder Cnaphalocrocis medinalis and the severity of rice blast caused by Magnaporthe grisea but decreased the severity of sheath blight caused by Rhizoctonia solani
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	resistance	Silencing OsMAPK20-5 has different effects on rice pests in the field.	These findings show that silencing OsMAPK20-5 has different effects on rice pests in the field, and these differences have important implications for the evolution and exploitation of resistance strategies in plants
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	sheath	Silencing OsMAPK20-5 has different effects on rice pests in the field.	In this context, we observed that silencing OsMAPK20-5 increased the percentage of leaf roll caused by leaf folder Cnaphalocrocis medinalis and the severity of rice blast caused by Magnaporthe grisea but decreased the severity of sheath blight caused by Rhizoctonia solani
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	blast	Silencing OsMAPK20-5 has different effects on rice pests in the field.	In this context, we observed that silencing OsMAPK20-5 increased the percentage of leaf roll caused by leaf folder Cnaphalocrocis medinalis and the severity of rice blast caused by Magnaporthe grisea but decreased the severity of sheath blight caused by Rhizoctonia solani
OsMPK7|OsMAPK20-5	Os05g0566400	LOC_Os05g49140	blight	Silencing OsMAPK20-5 has different effects on rice pests in the field.	In this context, we observed that silencing OsMAPK20-5 increased the percentage of leaf roll caused by leaf folder Cnaphalocrocis medinalis and the severity of rice blast caused by Magnaporthe grisea but decreased the severity of sheath blight caused by Rhizoctonia solani
OsMPS	Os02g0618400	LOC_Os02g40530	salt	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	OsMPS is induced by salt stress and expressed in vegetative and reproductive tissues
OsMPS	Os02g0618400	LOC_Os02g40530	biomass	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	Over-expression of OsMPS reduces growth under non-stress conditions, while knockdown plants display increased biomass
OsMPS	Os02g0618400	LOC_Os02g40530	reproductive	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	OsMPS is induced by salt stress and expressed in vegetative and reproductive tissues
OsMPS	Os02g0618400	LOC_Os02g40530	phytohormone	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	Expression profiling revealed that OsMPS negatively regulates the expression of EXPANSIN (EXP) and cell-wall biosynthesis as well as phytohormone signaling genes
OsMPS	Os02g0618400	LOC_Os02g40530	phytohormone	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	The multiple responses of OsMPS and its target genes to various hormones suggest an integrative function of OsMPS in the cross-talk between phytohormones and the environment to regulate adaptive growth
OsMPS	Os02g0618400	LOC_Os02g40530	cytokinin	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	OsMPS expression is induced by abscisic acid and cytokinin, but is repressed by auxin, gibberellin and brassinolide
OsMPS	Os02g0618400	LOC_Os02g40530	cytokinin	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	Furthermore, the expression of OsMPS-dependent genes is regulated by auxin, cytokinin and abscisic acid
OsMPS	Os02g0618400	LOC_Os02g40530	vegetative	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	OsMPS is induced by salt stress and expressed in vegetative and reproductive tissues
OsMPS	Os02g0618400	LOC_Os02g40530	salt stress	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	OsMPS is induced by salt stress and expressed in vegetative and reproductive tissues
OsMPS	Os02g0618400	LOC_Os02g40530	transcription factor	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	Here, the role of MULTIPASS (OsMPS), an R2R3-type MYB transcription factor of rice, was explored
OsMPS	Os02g0618400	LOC_Os02g40530	gibberellin	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	OsMPS expression is induced by abscisic acid and cytokinin, but is repressed by auxin, gibberellin and brassinolide
OsMPS	Os02g0618400	LOC_Os02g40530	auxin	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	OsMPS expression is induced by abscisic acid and cytokinin, but is repressed by auxin, gibberellin and brassinolide
OsMPS	Os02g0618400	LOC_Os02g40530	auxin	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	Growth retardation caused by OsMPS over-expression is partially restored by auxin application
OsMPS	Os02g0618400	LOC_Os02g40530	auxin	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	Furthermore, the expression of OsMPS-dependent genes is regulated by auxin, cytokinin and abscisic acid
OsMPS	Os02g0618400	LOC_Os02g40530	growth	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	Over-expression of OsMPS reduces growth under non-stress conditions, while knockdown plants display increased biomass
OsMPS	Os02g0618400	LOC_Os02g40530	growth	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	Growth retardation caused by OsMPS over-expression is partially restored by auxin application
OsMPS	Os02g0618400	LOC_Os02g40530	growth	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways	The multiple responses of OsMPS and its target genes to various hormones suggest an integrative function of OsMPS in the cross-talk between phytohormones and the environment to regulate adaptive growth
OsMRE11	Os04g0635900	LOC_Os04g54340	meiosis	MRE11 is required for homologous synapsis and DSB processing in rice meiosis	Taken together, our results provide evidence that OsMRE11 performs a function essential for maintaining the normal HR process and inhibiting non-homologous recombination during meiosis
OsMRE11	Os04g0635900	LOC_Os04g54340	meiotic	MRE11 is required for homologous synapsis and DSB processing in rice meiosis	Immunofluorescence studies further demonstrated that OsMRE11 is required for homologous synapsis and DSB processing but is dispensable for meiotic DSB formation
OsMRE11	Os04g0635900	LOC_Os04g54340	meiotic	MRE11 is required for homologous synapsis and DSB processing in rice meiosis	We found that OsMRE11 protein was located on meiotic chromosomes from interphase to late pachytene
OsMRE11	Os04g0635900	LOC_Os04g54340	seed	MRE11 is required for homologous synapsis and DSB processing in rice meiosis	The OsMRE11-deficient plants exhibited normal vegetative growth but could not set seed
OsMRE11	Os04g0635900	LOC_Os04g54340	growth	MRE11 is required for homologous synapsis and DSB processing in rice meiosis	The OsMRE11-deficient plants exhibited normal vegetative growth but could not set seed
OsMRE11	Os04g0635900	LOC_Os04g54340	vegetative	MRE11 is required for homologous synapsis and DSB processing in rice meiosis	The OsMRE11-deficient plants exhibited normal vegetative growth but could not set seed
OsMRE11	Os04g0635900	LOC_Os04g54340	growth	OsMre11 Is Required for Mitosis during Rice Growth and Development	OsMre11 Is Required for Mitosis during Rice Growth and Development
OsMRE11	Os04g0635900	LOC_Os04g54340	development	OsMre11 Is Required for Mitosis during Rice Growth and Development	OsMre11 Is Required for Mitosis during Rice Growth and Development
OsMRE11	Os04g0635900	LOC_Os04g54340	development	OsMre11 Is Required for Mitosis during Rice Growth and Development	These results indicated that OsMre11 plays vital roles in DNA replication and damage repair of the mitotic cell cycle, which ensure the development and fertility of rice by maintaining genome stability
OsMRE11	Os04g0635900	LOC_Os04g54340	fertility	OsMre11 Is Required for Mitosis during Rice Growth and Development	These results indicated that OsMre11 plays vital roles in DNA replication and damage repair of the mitotic cell cycle, which ensure the development and fertility of rice by maintaining genome stability
OsMRE11	Os04g0635900	LOC_Os04g54340	meristem	OsMre11 Is Required for Mitosis during Rice Growth and Development	The decreased number of cells in the apical meristem and the appearance of chromosomal fragments and bridges during the mitotic cell cycle in rice mre11 mutant roots revealed an essential role of OsMre11
OsMRE11	Os04g0635900	LOC_Os04g54340	mitosis	OsMre11 Is Required for Mitosis during Rice Growth and Development	OsMre11 Is Required for Mitosis during Rice Growth and Development
OsMRE11	Os04g0635900	LOC_Os04g54340	cell cycle	OsMre11 Is Required for Mitosis during Rice Growth and Development	The decreased number of cells in the apical meristem and the appearance of chromosomal fragments and bridges during the mitotic cell cycle in rice mre11 mutant roots revealed an essential role of OsMre11
OsMRE11	Os04g0635900	LOC_Os04g54340	cell cycle	OsMre11 Is Required for Mitosis during Rice Growth and Development	These results indicated that OsMre11 plays vital roles in DNA replication and damage repair of the mitotic cell cycle, which ensure the development and fertility of rice by maintaining genome stability
OsMRE11	Os04g0635900	LOC_Os04g54340	homologous recombination	OsMre11 Is Required for Mitosis during Rice Growth and Development	Moreover, OsMre11 could form a complex with OsRad50 and OsNbs1, and they might function together in non-homologous end joining and homologous recombination repair pathways
OsMRP5	Os03g0142800	LOC_Os03g04920	seed	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.
OsMRP5	Os03g0142800	LOC_Os03g04920	seed	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.	The OsMRP5 gene, of which mutations are known to reduce seed PA as well as seed yield and viability, was down-regulated specifically in rice seeds by using an artificial microRNA driven by the rice seed specific promoter Ole18
OsMRP5	Os03g0142800	LOC_Os03g04920	seed	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.	Put together, the present study demonstrated that seed specific silencing of OsMRP5 could significantly reduce the PA content and increase Pi levels in seeds; however, it also significantly lowers seed weight in rice
OsMRP5	Os03g0142800	LOC_Os03g04920	yield	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.	The OsMRP5 gene, of which mutations are known to reduce seed PA as well as seed yield and viability, was down-regulated specifically in rice seeds by using an artificial microRNA driven by the rice seed specific promoter Ole18
OsMRP5	Os03g0142800	LOC_Os03g04920	seed weight	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.	Put together, the present study demonstrated that seed specific silencing of OsMRP5 could significantly reduce the PA content and increase Pi levels in seeds; however, it also significantly lowers seed weight in rice
OsMRP5	Os03g0142800	LOC_Os03g04920	Pi	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.	Put together, the present study demonstrated that seed specific silencing of OsMRP5 could significantly reduce the PA content and increase Pi levels in seeds; however, it also significantly lowers seed weight in rice
OsMRP5	Os03g0142800	LOC_Os03g04920	pi	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.	Put together, the present study demonstrated that seed specific silencing of OsMRP5 could significantly reduce the PA content and increase Pi levels in seeds; however, it also significantly lowers seed weight in rice
OsMRP5	Os03g0142800	LOC_Os03g04920	vegetative	Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds.	OsMRP5 is expressed in both vegetative tissues and developing seeds, and the two mutations do not change the level of RNA transcription
OsMRP5	Os03g0142800	LOC_Os03g04920	phosphorus	Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds.	A T-DNA insertion line, 4A-02500, in which OsMRP5 was disrupted, also showed the same high inorganic phosphorus phenotype as Os-lpa-XS110-3 and appeared to be homozygous lethal
OsMRPL15	Os08g0310100	LOC_Os08g21840	development	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.
OsMRPL15	Os08g0310100	LOC_Os08g21840	pollen	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.
OsMRPL15	Os08g0310100	LOC_Os08g21840	pollen	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	 Osmrpl15 pollen was completely sterile, with abnormalities appearing at the tricellular stage including the absence of starch granules and disrupted mitochondrial structure
OsMRPL15	Os08g0310100	LOC_Os08g21840	pollen	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	 Loss of OsMRPL15 caused abnormal accumulation of mitoribosomal proteins and large subunit rRNA in pollen mitochondria
OsMRPL15	Os08g0310100	LOC_Os08g21840	pollen	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	 Osmrpl15 pollen contained smaller amounts of intermediates related to starch metabolism than wild-type pollen, while biosynthesis of several amino acids was upregulated, possibly to compensate for defective mitochondrial protein biosynthesis and initiate consumption of carbohydrates necessary for starch biosynthesis
OsMRPL15	Os08g0310100	LOC_Os08g21840	starch	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	 Osmrpl15 pollen was completely sterile, with abnormalities appearing at the tricellular stage including the absence of starch granules and disrupted mitochondrial structure
OsMRPL15	Os08g0310100	LOC_Os08g21840	starch	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	 Osmrpl15 pollen contained smaller amounts of intermediates related to starch metabolism than wild-type pollen, while biosynthesis of several amino acids was upregulated, possibly to compensate for defective mitochondrial protein biosynthesis and initiate consumption of carbohydrates necessary for starch biosynthesis
OsMRPL15	Os08g0310100	LOC_Os08g21840	mitochondria	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	 Loss of OsMRPL15 caused abnormal accumulation of mitoribosomal proteins and large subunit rRNA in pollen mitochondria
OsMRPL15	Os08g0310100	LOC_Os08g21840	pollen development	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.
OsMRPL15	Os08g0310100	LOC_Os08g21840	starch biosynthesis	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	 Osmrpl15 pollen contained smaller amounts of intermediates related to starch metabolism than wild-type pollen, while biosynthesis of several amino acids was upregulated, possibly to compensate for defective mitochondrial protein biosynthesis and initiate consumption of carbohydrates necessary for starch biosynthesis
OsMSD	Os05g0323900	LOC_Os05g25850	mitochondria	Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes	The results suggest that only the mitochondrial SOD, OsMSD, attenuated the stress induction of OsAOX1a/b specifically
OsMSH4	Os07g0486000	LOC_Os07g30240	meiosis	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5
OsMSH4	Os07g0486000	LOC_Os07g30240	Holliday junctions	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5	The MSH4-MSH5 heterodimer has been demonstrated in mammals to stabilize the formation of progenitor and double Holliday junctions that may be resolved as crossovers (COs).
OsMSH4	Os07g0486000	LOC_Os07g30240	crossover	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5	The MSH4-MSH5 heterodimer has been demonstrated in mammals to stabilize the formation of progenitor and double Holliday junctions that may be resolved as crossovers (COs).
OsMSH4	Os07g0486000	LOC_Os07g30240	pollen	The role of OsMSH4 in male and female gamete development in rice meiosis.	Cytological analysis showed that developments of both pollen and embryo sacs in an Osmsh4 mutant were blocked due to defective chromosome pairing
OsMSH4	Os07g0486000	LOC_Os07g30240	development	The role of OsMSH4 in male and female gamete development in rice meiosis.	The role of OsMSH4 in male and female gamete development in rice meiosis.
OsMSH5	Os05g0498300	LOC_Os05g41880	sterile	The role of OsMSH5 in crossover formation during rice meiosis	The synaptonemal complex is well installed in Osmsh5, while the chiasma frequency is greatly reduced to approximately 10% of that observed in the wild-type, leading to the homologous non-disjunction and complete sterile phenotype
OsMSH5	Os05g0498300	LOC_Os05g41880	meiotic	The role of OsMSH5 in crossover formation during rice meiosis	Immunofluorescence studies indicate that OsMSH5 chromosomal localization is limited to the early meiotic prophase I
OsMSH5	Os05g0498300	LOC_Os05g41880	meiotic	The role of OsMSH5 in crossover formation during rice meiosis	OsMSH5 can be loaded onto meiotic chromosomes in Oszip4, Osmer3, and hei10
OsMSH5	Os05g0498300	LOC_Os05g41880	meiosis	The role of OsMSH5 in crossover formation during rice meiosis	Here, we report the identification and characterization of its rice homolog, OsMSH5, and demonstrate its function in rice meiosis
OsMSH5	Os05g0498300	LOC_Os05g41880	meiosis	The role of OsMSH5 in crossover formation during rice meiosis	The role of OsMSH5 in crossover formation during rice meiosis
OsMSH5	Os05g0498300	LOC_Os05g41880	panicle	The role of OsMSH5 in crossover formation during rice meiosis	OsMSH5 is predominantly expressed in panicles
OsMSH5	Os05g0498300	LOC_Os05g41880	sterility	The role of OsMSH5 in crossover formation during rice meiosis	Five independent Osmsh5 mutants exhibited normal vegetative growth and severe sterility
OsMSH5	Os05g0498300	LOC_Os05g41880	vegetative	The role of OsMSH5 in crossover formation during rice meiosis	Five independent Osmsh5 mutants exhibited normal vegetative growth and severe sterility
OsMSH5	Os05g0498300	LOC_Os05g41880	growth	The role of OsMSH5 in crossover formation during rice meiosis	Five independent Osmsh5 mutants exhibited normal vegetative growth and severe sterility
OsMSH5	Os05g0498300	LOC_Os05g41880	crossover	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5	The MSH4-MSH5 heterodimer has been demonstrated in mammals to stabilize the formation of progenitor and double Holliday junctions that may be resolved as crossovers (COs).
OsMSH5	Os05g0498300	LOC_Os05g41880	Holliday junctions	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5	The MSH4-MSH5 heterodimer has been demonstrated in mammals to stabilize the formation of progenitor and double Holliday junctions that may be resolved as crossovers (COs).
OsMSH5	Os05g0498300	LOC_Os05g41880	meiosis	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5
OsMSH6	Os09g0407600	LOC_Os09g24220	breeding	Specific-Locus Amplified Fragment Sequencing Reveals Spontaneous Single-Nucleotide Mutations in Rice OsMsh6 Mutants.	Our data suggests that OsMsh6 (LOC_Os09g24220) is important in ensuring genome stability by recognizing mismatches that arise spontaneously and provides useful information for investigating the function of the OsMsh6 gene in DNA repair and exploiting MMR mutants in rice induced mutation breeding
OsMSI1	Os03g0640100	LOC_Os03g43890	development	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	OsMSI1 was ubiquitously expressed and appears to be essential for development in rice, as the mutation of OsMSI1 was lethal
OsMSI1	Os03g0640100	LOC_Os03g43890	development	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	These results suggest that OsRBR1 and OsRBR2 function with OsMSI1 in reproductive development in rice
OsMSI1	Os03g0640100	LOC_Os03g43890	floral	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	Similar to the protein interaction between AtRBR and AtMSI1 that is essential for floral de-velopment in Arabidopsis, OsMSI1 was identified as an interaction partner of OsRBR1 and OsRBR2
OsMSI1	Os03g0640100	LOC_Os03g43890	reproductive	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	These results suggest that OsRBR1 and OsRBR2 function with OsMSI1 in reproductive development in rice
OsMSI1	Os03g0640100	LOC_Os03g43890	reproductive development	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	These results suggest that OsRBR1 and OsRBR2 function with OsMSI1 in reproductive development in rice
OsMSP1|MSP1|OsTMS15	Os01g0917500	LOC_Os01g68870	temperature	Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line ostms15.	 We propose that the recovered protein interaction together with slow development under low temperature compensates for the defective tapetum initiation, which further restores ostms15 fertility
OsMSP1|MSP1|OsTMS15	Os01g0917500	LOC_Os01g68870	development	Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line ostms15.	 OsTMS15 encodes an LRR-RLK protein MULTIPLE SPOROCYTE1 (MSP1) which was reported to interact with its ligand to initiate tapetum development for pollen formation
OsMSP1|MSP1|OsTMS15	Os01g0917500	LOC_Os01g68870	development	Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line ostms15.	 We propose that the recovered protein interaction together with slow development under low temperature compensates for the defective tapetum initiation, which further restores ostms15 fertility
OsMSP1|MSP1|OsTMS15	Os01g0917500	LOC_Os01g68870	fertility	Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line ostms15.	 We propose that the recovered protein interaction together with slow development under low temperature compensates for the defective tapetum initiation, which further restores ostms15 fertility
OsMSP1|MSP1|OsTMS15	Os01g0917500	LOC_Os01g68870	pollen	Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line ostms15.	 OsTMS15 encodes an LRR-RLK protein MULTIPLE SPOROCYTE1 (MSP1) which was reported to interact with its ligand to initiate tapetum development for pollen formation
OsMSP1|MSP1|OsTMS15	Os01g0917500	LOC_Os01g68870	tapetum	Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line ostms15.	 OsTMS15 encodes an LRR-RLK protein MULTIPLE SPOROCYTE1 (MSP1) which was reported to interact with its ligand to initiate tapetum development for pollen formation
OsMSP1|MSP1|OsTMS15	Os01g0917500	LOC_Os01g68870	tapetum	Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line ostms15.	 We propose that the recovered protein interaction together with slow development under low temperature compensates for the defective tapetum initiation, which further restores ostms15 fertility
OsMSP1|MSP1|OsTMS15	Os01g0917500	LOC_Os01g68870	pollen formation	Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line ostms15.	 OsTMS15 encodes an LRR-RLK protein MULTIPLE SPOROCYTE1 (MSP1) which was reported to interact with its ligand to initiate tapetum development for pollen formation
OsMSR15	Os03g0610400	LOC_Os03g41390	seed	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	Expression of OsMSR15 in Arabidopsis conferred drought tolerance, and transgenic plants showed hypersensitivity to exogenous ABA during the seed germination and post-germination stages
OsMSR15	Os03g0610400	LOC_Os03g41390	drought	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis
OsMSR15	Os03g0610400	LOC_Os03g41390	drought	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	Expression of OsMSR15 was strongly up-regulated by cold, drought and heat stresses in different tissues at different developmental stages of rice
OsMSR15	Os03g0610400	LOC_Os03g41390	drought	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	Expression of OsMSR15 in Arabidopsis conferred drought tolerance, and transgenic plants showed hypersensitivity to exogenous ABA during the seed germination and post-germination stages
OsMSR15	Os03g0610400	LOC_Os03g41390	drought	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	The obtained results indicate that OsMSR15 is an important regulator involved in plant response to drought stress
OsMSR15	Os03g0610400	LOC_Os03g41390	seed germination	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	Expression of OsMSR15 in Arabidopsis conferred drought tolerance, and transgenic plants showed hypersensitivity to exogenous ABA during the seed germination and post-germination stages
OsMSR15	Os03g0610400	LOC_Os03g41390	tolerance	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis
OsMSR15	Os03g0610400	LOC_Os03g41390	ABA	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	Expression of OsMSR15 in Arabidopsis conferred drought tolerance, and transgenic plants showed hypersensitivity to exogenous ABA during the seed germination and post-germination stages
OsMSR15	Os03g0610400	LOC_Os03g41390	drought tolerance	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis
OsMSR15	Os03g0610400	LOC_Os03g41390	drought tolerance	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	Expression of OsMSR15 in Arabidopsis conferred drought tolerance, and transgenic plants showed hypersensitivity to exogenous ABA during the seed germination and post-germination stages
OsMSR15	Os03g0610400	LOC_Os03g41390	stress	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	The obtained results indicate that OsMSR15 is an important regulator involved in plant response to drought stress
OsMSR15	Os03g0610400	LOC_Os03g41390	zinc	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis
OsMSR15	Os03g0610400	LOC_Os03g41390	zinc	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	OsMSR15 contains two C2H2-type zinc nger motifs, a nuclear localization signal (B box), a Leu-rich domain (L-box) and a conserved EAR-motif close to its C-terminus
OsMSR15	Os03g0610400	LOC_Os03g41390	R protein	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis
OsMSR15	Os03g0610400	LOC_Os03g41390	drought stress	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	The obtained results indicate that OsMSR15 is an important regulator involved in plant response to drought stress
OsMSR15	Os03g0610400	LOC_Os03g41390	ABA	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	Expression of OsMSR15 in Arabidopsis conferred drought tolerance, and transgenic plants showed hypersensitivity to exogenous ABA during the seed germination and post-germination stages
OsMSR2	Os01g0955100	LOC_Os01g72530	drought	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	Expression of OsMSR2 was strongly up-regulated by a wide spectrum of stresses, including cold, drought, and heat in different tissues at different developmental stages of rice, as revealed by both microarray and quantitative real-time RT-PCR analyses
OsMSR2	Os01g0955100	LOC_Os01g72530	drought	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	Expression of OsMSR2 conferred enhanced tolerance to high salt and drought in Arabidopsis (Arabidopsis thaliana) accompanied by altered expression of stress/ABA-responsive genes
OsMSR2	Os01g0955100	LOC_Os01g72530	drought	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	The results suggest that expression of OsMSR2 modulated salt and drought tolerance in Arabidopsis through ABA-mediated pathways
OsMSR2	Os01g0955100	LOC_Os01g72530	drought	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis
OsMSR2	Os01g0955100	LOC_Os01g72530	ABA	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis
OsMSR2	Os01g0955100	LOC_Os01g72530	drought tolerance	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	The results suggest that expression of OsMSR2 modulated salt and drought tolerance in Arabidopsis through ABA-mediated pathways
OsMSR2	Os01g0955100	LOC_Os01g72530	salt	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	Expression of OsMSR2 conferred enhanced tolerance to high salt and drought in Arabidopsis (Arabidopsis thaliana) accompanied by altered expression of stress/ABA-responsive genes
OsMSR2	Os01g0955100	LOC_Os01g72530	salt	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	The results suggest that expression of OsMSR2 modulated salt and drought tolerance in Arabidopsis through ABA-mediated pathways
OsMSR2	Os01g0955100	LOC_Os01g72530	salt	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis
OsMSR2	Os01g0955100	LOC_Os01g72530	salt tolerance	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis
OsMSR2	Os01g0955100	LOC_Os01g72530	transporter	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ChIP-seq analysis identified that the direct targets of ONAC127 and ONAC129 in developing rice seeds include monosaccharide transporter OsMST6, sugar transporter OsSWEET4, calmodulin-like protein OsMSR2 and AP2/ERF factor OsEATB
OsMSR2	Os01g0955100	LOC_Os01g72530	sugar	A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling	ChIP-seq analysis identified that the direct targets of ONAC127 and ONAC129 in developing rice seeds include monosaccharide transporter OsMST6, sugar transporter OsSWEET4, calmodulin-like protein OsMSR2 and AP2/ERF factor OsEATB
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	root	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Overexpression of OsMsr9 in Arabidopsis and rice showed enhanced salt stress tolerance displaying increased shoot and root elongation, higher survival rates in transgenic plants compared with wild type
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	shoot	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Overexpression of OsMsr9 in Arabidopsis and rice showed enhanced salt stress tolerance displaying increased shoot and root elongation, higher survival rates in transgenic plants compared with wild type
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	drought	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	In a previous study, it has been shown that OsMsr9 was induced by cold, drought and heat stresses
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Here, we report that OsMsr9 plays roles in salt tolerance in plants
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Quantitative real-time PCR (qPCR) analysis revealed that OsMsr9 was also rapidly and strongly induced by salt stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Overexpression of OsMsr9 in Arabidopsis and rice showed enhanced salt stress tolerance displaying increased shoot and root elongation, higher survival rates in transgenic plants compared with wild type
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	OsMsr9 might act as a positive regulator of plant salt tolerance with reinforced expression of stress-related genes, such as RD29A, DREB2A and RAB18 in transgenic plants under salt conditions
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	These results indicate that OsMsr9 could be a useful gene in developing transgenic crops with enhanced salt tolerance
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	tolerance	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Here, we report that OsMsr9 plays roles in salt tolerance in plants
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	tolerance	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Overexpression of OsMsr9 in Arabidopsis and rice showed enhanced salt stress tolerance displaying increased shoot and root elongation, higher survival rates in transgenic plants compared with wild type
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	tolerance	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	OsMsr9 might act as a positive regulator of plant salt tolerance with reinforced expression of stress-related genes, such as RD29A, DREB2A and RAB18 in transgenic plants under salt conditions
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	tolerance	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	These results indicate that OsMsr9 could be a useful gene in developing transgenic crops with enhanced salt tolerance
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	root elongation	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Overexpression of OsMsr9 in Arabidopsis and rice showed enhanced salt stress tolerance displaying increased shoot and root elongation, higher survival rates in transgenic plants compared with wild type
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt tolerance	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Here, we report that OsMsr9 plays roles in salt tolerance in plants
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt tolerance	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	OsMsr9 might act as a positive regulator of plant salt tolerance with reinforced expression of stress-related genes, such as RD29A, DREB2A and RAB18 in transgenic plants under salt conditions
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt tolerance	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	These results indicate that OsMsr9 could be a useful gene in developing transgenic crops with enhanced salt tolerance
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt stress	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Quantitative real-time PCR (qPCR) analysis revealed that OsMsr9 was also rapidly and strongly induced by salt stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	salt stress	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Overexpression of OsMsr9 in Arabidopsis and rice showed enhanced salt stress tolerance displaying increased shoot and root elongation, higher survival rates in transgenic plants compared with wild type
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	stress	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Quantitative real-time PCR (qPCR) analysis revealed that OsMsr9 was also rapidly and strongly induced by salt stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	stress	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Overexpression of OsMsr9 in Arabidopsis and rice showed enhanced salt stress tolerance displaying increased shoot and root elongation, higher survival rates in transgenic plants compared with wild type
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	stress tolerance	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Overexpression of OsMsr9 in Arabidopsis and rice showed enhanced salt stress tolerance displaying increased shoot and root elongation, higher survival rates in transgenic plants compared with wild type
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	root	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 expression level modulates root architecture and drought stress tolerance in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	root	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 knockdown (OsFBX257(KD) ) lines show reduced total root length and depth, crown root number, panicle size and survival under stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	panicle	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 knockdown (OsFBX257(KD) ) lines show reduced total root length and depth, crown root number, panicle size and survival under stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	drought	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	drought	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 expression level modulates root architecture and drought stress tolerance in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	drought	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 is a promising breeding target for alleviating drought stress-induced damage in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	stress	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	stress	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 expression level modulates root architecture and drought stress tolerance in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	stress	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 knockdown (OsFBX257(KD) ) lines show reduced total root length and depth, crown root number, panicle size and survival under stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	drought stress	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	drought stress	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 expression level modulates root architecture and drought stress tolerance in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	drought stress	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 is a promising breeding target for alleviating drought stress-induced damage in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	drought stress 	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	drought stress 	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 expression level modulates root architecture and drought stress tolerance in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	tolerance	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 expression level modulates root architecture and drought stress tolerance in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	ABA	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	stress tolerance	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 expression level modulates root architecture and drought stress tolerance in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	architecture	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 expression level modulates root architecture and drought stress tolerance in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	panicle size	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 knockdown (OsFBX257(KD) ) lines show reduced total root length and depth, crown root number, panicle size and survival under stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	breeding	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 is a promising breeding target for alleviating drought stress-induced damage in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	protein kinase	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 is co-expressed in a network involving protein kinases and phosphatases
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	crown	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 knockdown (OsFBX257(KD) ) lines show reduced total root length and depth, crown root number, panicle size and survival under stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	crown root	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 knockdown (OsFBX257(KD) ) lines show reduced total root length and depth, crown root number, panicle size and survival under stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	 ABA 	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	root length	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 knockdown (OsFBX257(KD) ) lines show reduced total root length and depth, crown root number, panicle size and survival under stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	phosphatase	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 We show that OsFBX257 can bind the kinases OsCDPK1 and OsSAPK2, and that its phosphorylation can be reversed by phosphatase OsPP2C08
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	ER stress	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 knockdown (OsFBX257(KD) ) lines show reduced total root length and depth, crown root number, panicle size and survival under stress
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	root architecture	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 expression level modulates root architecture and drought stress tolerance in rice
OsMsr9|OsFBX257	Os07g0561300	LOC_Os07g37400	root number	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 OsFBX257 knockdown (OsFBX257(KD) ) lines show reduced total root length and depth, crown root number, panicle size and survival under stress
OsMSRA4.1	Os10g0563600	LOC_Os10g41400	abiotic stress	OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses	OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses
OsMSRB1.1	Os06g0472000	LOC_Os06g27760	abiotic stress	OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses	OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	homeostasis	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	This paper presents evidence that OsMAPK2 (Oryza sativa MAP kinase gene 2) is responsive to Pi deficiency and involved in Pi homeostasis
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	homeostasis	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	Our results indicated that OsMAPK2 enables tolerance phosphate deficiency and is involved in Pi homeostasis
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	temperature	Expression of Oryza sativa MAP kinase gene is developmentally regulated and stress-responsive	In suspension-cultured cells, the OsMAPK2 mRNA transcript increased markedly upon temperature downshift from 26degreesC to 4degreesC and sucrose starvation
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	temperature	Expression of Oryza sativa MAP kinase gene is developmentally regulated and stress-responsive	In contrast, the OsMAPK2 mRNA level rapidly declined in rice cell challenged by high temperature
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	disease resistance	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses	These results suggest that OsBIMK1 plays an important role in rice disease resistance
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	disease resistance	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	abiotic stress	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Present results demonstrating dramatic transcriptional and transient regulation of the OsMSRMK2 expression by diverse biotic/abiotic stresses, a first report for any rice (or plant) MAPK to date, suggest a role for OsMSRMK2 in rice defense/stress response pathways
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	salt	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Using in vitro system, we show that the expression of OsMSRMK2 mRNA was potently enhanced within 15 min by signalling molecules, protein phosphatase inhibitors, ultraviolet irradiation, fungal elicitor, heavy metals, high salt and sucrose, and drought
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	phosphate	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	We found that full-length expression of OsMAPK2 was up-regulated in both rice plants and cell culture in the absence of inorganic phosphate (Pi)
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	phosphate	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	Our results indicated that OsMAPK2 enables tolerance phosphate deficiency and is involved in Pi homeostasis
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	phosphate	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	cold stress	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	By contrast, overexpression lines exhibited increased OsMAPK5 kinase activity and increased tolerance to drought, salt, and cold stresses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	jasmonic acid	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses	Expression of OsBIMK1 was activated rapidly upon treatment with benzothiadiazole (BTH) as well as with dichloroisonicotinic acid, probenazole, jasmonic acid and its methyl ester, Pseudomonas syringae pv
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	disease resistance	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	These results strongly suggest that OsMAPK5 can positively regulate drought, salt, and cold tolerance and negatively modulate PR gene expression and broad-spectrum disease resistance
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	root development	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	The transgenic rice and Arabidopsis plants overexpressing OsMAPK2 showed affected root development and increased plant Pi content compared with wild-type plants
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	root	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	The transgenic rice and Arabidopsis plants overexpressing OsMAPK2 showed affected root development and increased plant Pi content compared with wild-type plants
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	salicylic acid	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	OsMSRMK2 expression was further modulated by co-application of JA, salicylic acid, and ethylene and required de novo synthesized protein factor(s) in its transient regulation
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	defense	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	Nipponbare) C(2) H(2) -type ZFP ZFP182 in ABA-induced antioxidant defense and the relationship between ZFP182 and two rice MAPKs, OsMPK1 and OsMPK5 in ABA signaling were investigated
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	ethylene	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	OsMSRMK2 expression was further modulated by co-application of JA, salicylic acid, and ethylene and required de novo synthesized protein factor(s) in its transient regulation
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	seedling	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Nipponbare), we identified a single copy gene called OsMSRMK2 from jasmonic acid (JA) treated rice seedling leaf cDNA library
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	pi	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	This paper presents evidence that OsMAPK2 (Oryza sativa MAP kinase gene 2) is responsive to Pi deficiency and involved in Pi homeostasis
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	pi	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	The transgenic rice and Arabidopsis plants overexpressing OsMAPK2 showed affected root development and increased plant Pi content compared with wild-type plants
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	pi	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	Overexpression of OsMAPK2 controlled the expression of several Pi starvation-responsive genes
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	pi	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	Our results indicated that OsMAPK2 enables tolerance phosphate deficiency and is involved in Pi homeostasis
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	panicle	Expression of Oryza sativa MAP kinase gene is developmentally regulated and stress-responsive	Analysis at the mRNA level has shown that OsMAPK2 is expressed in all plant organs and high relative amounts of OsMAPK2 were detected in the mature panicles in comparison with in the immature panicles
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	panicle	Expression of Oryza sativa MAP kinase gene is developmentally regulated and stress-responsive	These results suggest that this OsMAPK2 may function in the stress-signalling pathway as well as panicle development in rice
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	abiotic stress	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	The OsMAPK2 gene has been found to function in plant tolerance to diverse biotic/abiotic stresses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	seedling	Expression of Oryza sativa MAP kinase gene is developmentally regulated and stress-responsive	A similarly rapid response of OsMAPK2 was observed in stress-treated seedlings, demonstrating that response of the MAPK pathway occurs also in intact plants
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	drought	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	The OsMAPK5 gene, its protein, and kinase activity were inducible by abscisic acid as well as various biotic (pathogen infection) and abiotic (wounding, drought, salt, and cold) stresses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	drought	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	By contrast, overexpression lines exhibited increased OsMAPK5 kinase activity and increased tolerance to drought, salt, and cold stresses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	drought	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	These results strongly suggest that OsMAPK5 can positively regulate drought, salt, and cold tolerance and negatively modulate PR gene expression and broad-spectrum disease resistance
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	biotic stress	Overexpression of OsMAPK2 Enhances Low Phosphate Tolerance in Rice and Arabidopsis thaliana	The OsMAPK2 gene has been found to function in plant tolerance to diverse biotic/abiotic stresses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	defense	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Present results demonstrating dramatic transcriptional and transient regulation of the OsMSRMK2 expression by diverse biotic/abiotic stresses, a first report for any rice (or plant) MAPK to date, suggest a role for OsMSRMK2 in rice defense/stress response pathways
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	temperature	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	Taken together, these results lead us to conclude that at least two signaling pathways for low temperature stress exist in rice, and that a MAP kinase pathway with OsMEK1 and OsMAP1 components is possibly involved in the signaling for the higher range low-temperature stress
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	temperature	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice	Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	temperature	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Moreover, high (37 degrees C) and low temperatures (12 degrees C) and environmental pollutants-ozone and sulfur dioxide-differentially regulate the OsMSRMK2 mRNA accumulation in leaves of intact plants
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	biotic stress	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Present results demonstrating dramatic transcriptional and transient regulation of the OsMSRMK2 expression by diverse biotic/abiotic stresses, a first report for any rice (or plant) MAPK to date, suggest a role for OsMSRMK2 in rice defense/stress response pathways
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	salt	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	The OsMAPK5 gene, its protein, and kinase activity were inducible by abscisic acid as well as various biotic (pathogen infection) and abiotic (wounding, drought, salt, and cold) stresses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	salt	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	By contrast, overexpression lines exhibited increased OsMAPK5 kinase activity and increased tolerance to drought, salt, and cold stresses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	salt	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	These results strongly suggest that OsMAPK5 can positively regulate drought, salt, and cold tolerance and negatively modulate PR gene expression and broad-spectrum disease resistance
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	jasmonic	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses	Expression of OsBIMK1 was activated rapidly upon treatment with benzothiadiazole (BTH) as well as with dichloroisonicotinic acid, probenazole, jasmonic acid and its methyl ester, Pseudomonas syringae pv
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	jasmonic	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Nipponbare), we identified a single copy gene called OsMSRMK2 from jasmonic acid (JA) treated rice seedling leaf cDNA library
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	leaf	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Nipponbare), we identified a single copy gene called OsMSRMK2 from jasmonic acid (JA) treated rice seedling leaf cDNA library
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	jasmonic acid	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Nipponbare), we identified a single copy gene called OsMSRMK2 from jasmonic acid (JA) treated rice seedling leaf cDNA library
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	disease	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses	These results suggest that OsBIMK1 plays an important role in rice disease resistance
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	disease	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	disease	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	These results strongly suggest that OsMAPK5 can positively regulate drought, salt, and cold tolerance and negatively modulate PR gene expression and broad-spectrum disease resistance
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	ABA	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	Nipponbare) C(2) H(2) -type ZFP ZFP182 in ABA-induced antioxidant defense and the relationship between ZFP182 and two rice MAPKs, OsMPK1 and OsMPK5 in ABA signaling were investigated
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	ABA	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	ABA treatment induced the increases in the expression of ZFP182, OsMPK1 and OsMPK5, and the activities of superoxide dismutase (SOD) and ascorbate peroxidase (APX) in rice leaves
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	ABA	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	Besides, OsMPK1 and OsMPK5 were shown to be required for the up-regulation in the expression of ZFP182 in ABA signaling, but ZFP182 did not mediate the ABA-induced up-regulation in the expression of OsMPK1 and OsMPK5
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	cold tolerance	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase	These results strongly suggest that OsMAPK5 can positively regulate drought, salt, and cold tolerance and negatively modulate PR gene expression and broad-spectrum disease resistance
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	drought	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues	Using in vitro system, we show that the expression of OsMSRMK2 mRNA was potently enhanced within 15 min by signalling molecules, protein phosphatase inhibitors, ultraviolet irradiation, fungal elicitor, heavy metals, high salt and sucrose, and drought
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	transcription factor	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	resistance	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	Using transgenic plants defective in early signaling, we show that OsMPK3 is required, and that OsMPK6 and OsWRKY70 contribute to indole-mediated defense priming of JA-dependent herbivore resistance
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	defense	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	Using transgenic plants defective in early signaling, we show that OsMPK3 is required, and that OsMPK6 and OsWRKY70 contribute to indole-mediated defense priming of JA-dependent herbivore resistance
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	jasmonate	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	jasmonic	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	jasmonic acid	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	Kinase	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	protein kinase	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
OsMSRMK2|OsMAP1|OsMPK5|OsMAPK2|OsMAPK5|OsBIMK1|OsMPK3	Os03g0285800	LOC_Os03g17700	root	Development of efficient protocol for rice transformation overexpressing MAP kinase and their effect on root phenotypic traits.	It was observed that OsMPK6 overexpression lines had a more robust and spread out root architectural system while OsMPK3 overexpression lines had a typical bushy phenotype
OsMST1	Os04g0452700	LOC_Os04g37980	transporter	Characterization and expression of monosaccharide transporters (osMSTs) in rice	OsMST1-3 (Oryza sativa monosaccharide transporters 1-3) have two sets of putative six transmembrane domains separated by a central long hydrophilic region
OsMST3	Os07g0106200	LOC_Os07g01560	root	Characterization and expression of monosaccharide transporters (osMSTs) in rice	Northern blot and in situ hybridization analyses showed that OsMST3 mRNA is detectable in leaf blades, leaf sheaths, calli and roots, especially the xylem as well as in sclerenchyma cells in the root
OsMST3	Os07g0106200	LOC_Os07g01560	xylem	Characterization and expression of monosaccharide transporters (osMSTs) in rice	Northern blot and in situ hybridization analyses showed that OsMST3 mRNA is detectable in leaf blades, leaf sheaths, calli and roots, especially the xylem as well as in sclerenchyma cells in the root
OsMST3	Os07g0106200	LOC_Os07g01560	leaf	Characterization and expression of monosaccharide transporters (osMSTs) in rice	Northern blot and in situ hybridization analyses showed that OsMST3 mRNA is detectable in leaf blades, leaf sheaths, calli and roots, especially the xylem as well as in sclerenchyma cells in the root
OsMST3	Os07g0106200	LOC_Os07g01560	transporter	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	6% identity with the rice monosaccharide transporter OsMST3
OsMST3	Os07g0106200	LOC_Os07g01560	cell wall	Characterization and expression of monosaccharide transporters (osMSTs) in rice	These results suggested that OsMST3 is involved in the accumulation of monosaccharides required for cell wall synthesis at the stage of cell thickening
OsMST3	Os07g0106200	LOC_Os07g01560	sheath	Characterization and expression of monosaccharide transporters (osMSTs) in rice	Northern blot and in situ hybridization analyses showed that OsMST3 mRNA is detectable in leaf blades, leaf sheaths, calli and roots, especially the xylem as well as in sclerenchyma cells in the root
OsMST4	Os03g0218400	LOC_Os03g11900	endosperm	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	Cellular location in young caryopses through RNA in situ hybridization showed that OsMST4 mRNA mainly accumulates in the vascular parenchyma of the chalazal vein, cross-cells, nucellar tissue and endosperm
OsMST4	Os03g0218400	LOC_Os03g11900	grain	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	These data indicate that OsMST4 is actively involved in monosaccharides supply for seed development during the course of grain filling
OsMST4	Os03g0218400	LOC_Os03g11900	seed development	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	These data indicate that OsMST4 is actively involved in monosaccharides supply for seed development during the course of grain filling
OsMST4	Os03g0218400	LOC_Os03g11900	transporter	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	The deduced OsMST4 protein shows typical features of monosaccharide transporters, and shares high homology with other plant homologues
OsMST4	Os03g0218400	LOC_Os03g11900	transporter	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	Heterologous expression in yeast (Saccharomyces cerevisiae) showed that OsMST4 is a functional monosaccharide transporter capable of transporting glucose, fructose, mannose and galactose
OsMST4	Os03g0218400	LOC_Os03g11900	transporter	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)
OsMST4	Os03g0218400	LOC_Os03g11900	grain filling	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	These data indicate that OsMST4 is actively involved in monosaccharides supply for seed development during the course of grain filling
OsMST4	Os03g0218400	LOC_Os03g11900	seed	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	These data indicate that OsMST4 is actively involved in monosaccharides supply for seed development during the course of grain filling
OsMST5	Os08g0178200	LOC_Os08g08070	seed development	Sugar transporters involved in flowering and grain development of rice	These data presented suggest that bothOsSUT2andOsMST5 play a role during the development at the early stage of the seed development
OsMST5	Os08g0178200	LOC_Os08g08070	flower	Sugar transporters involved in flowering and grain development of rice	To investigate sugar transport processes during flowering and in developing grains of rice, we newly isolated two genomic clonesOsSUT2(Oryzasativasucrosetransporter 2) andOsMST5(Oryzasativamonosaccharidetransporter 5) and their corresponding cDNAs
OsMST5	Os08g0178200	LOC_Os08g08070	grain	Sugar transporters involved in flowering and grain development of rice	To investigate sugar transport processes during flowering and in developing grains of rice, we newly isolated two genomic clonesOsSUT2(Oryzasativasucrosetransporter 2) andOsMST5(Oryzasativamonosaccharidetransporter 5) and their corresponding cDNAs
OsMST5	Os08g0178200	LOC_Os08g08070	seed	Sugar transporters involved in flowering and grain development of rice	These data presented suggest that bothOsSUT2andOsMST5 play a role during the development at the early stage of the seed development
OsMST5	Os08g0178200	LOC_Os08g08070	transporter	Characterization of Rice Functional Monosaccharide Transporter,OsMST5	cDNA of a monosaccharide transporter in rice, OsMST5 (Oryza sativa monosaccharide transporter 5) was cloned and its sugar transport activity was characterized by heterologous expression analysis
OsMST5	Os08g0178200	LOC_Os08g08070	transporter	Characterization of Rice Functional Monosaccharide Transporter,OsMST5	Characterization of Rice Functional Monosaccharide Transporter,OsMST5
OsMST5	Os08g0178200	LOC_Os08g08070	transporter	Sugar transporters involved in flowering and grain development of rice	To investigate sugar transport processes during flowering and in developing grains of rice, we newly isolated two genomic clonesOsSUT2(Oryzasativasucrosetransporter 2) andOsMST5(Oryzasativamonosaccharidetransporter 5) and their corresponding cDNAs
OsMST5	Os08g0178200	LOC_Os08g08070	pollen	Characterization of Rice Functional Monosaccharide Transporter,OsMST5	Most of the OsMST5 was expressed in panicles before pollination, indicating that it is associated with pollen development in rice
OsMST5	Os08g0178200	LOC_Os08g08070	panicle	Characterization of Rice Functional Monosaccharide Transporter,OsMST5	Most of the OsMST5 was expressed in panicles before pollination, indicating that it is associated with pollen development in rice
OsMST5	Os08g0178200	LOC_Os08g08070	panicle	Sugar transporters involved in flowering and grain development of rice	Northern blot analysis revealed thatOsSUT2andOsMST5mRNA accumulates in panicles before pollination
OsMST6	Os07g0559700	LOC_Os07g37320	endosperm	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	RNA in situ hybridization analysis indicated that OsMST6 is predominantly expressed in the vascular parenchyma of the chalazal vein, cross-cells, nucellar tissue and endosperm of young seeds, in mesophyll cells of source leaf blades, and in pollens and the connective vein of anthers
OsMST6	Os07g0559700	LOC_Os07g37320	anther	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	RNA in situ hybridization analysis indicated that OsMST6 is predominantly expressed in the vascular parenchyma of the chalazal vein, cross-cells, nucellar tissue and endosperm of young seeds, in mesophyll cells of source leaf blades, and in pollens and the connective vein of anthers
OsMST6	Os07g0559700	LOC_Os07g37320	transporter	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	In this study, a new monosaccharide transporter gene OsMST6 was identified from rice (Oryza sativa L
OsMST6	Os07g0559700	LOC_Os07g37320	transporter	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	The predicted OsMST6 protein shows typical features of sugar transporters and shares 79
OsMST6	Os07g0559700	LOC_Os07g37320	transporter	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	Heterologous expression in yeast (Saccharomyces cerevisiae) demonstrated that OsMST6 is a broad-spectrum monosaccharide transporter, with a K (m) of 266
OsMST6	Os07g0559700	LOC_Os07g37320	transporter	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)
OsMST6	Os07g0559700	LOC_Os07g37320	pollen	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	RNA in situ hybridization analysis indicated that OsMST6 is predominantly expressed in the vascular parenchyma of the chalazal vein, cross-cells, nucellar tissue and endosperm of young seeds, in mesophyll cells of source leaf blades, and in pollens and the connective vein of anthers
OsMST6	Os07g0559700	LOC_Os07g37320	salt	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	In addition, OsMST6 expression is up-regulated by salt stress and sugars
OsMST6	Os07g0559700	LOC_Os07g37320	grain	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	In developing seeds, OsMST6 expression level is high at the early and middle grain filling stages and gradually declines later
OsMST6	Os07g0559700	LOC_Os07g37320	salt stress	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	In addition, OsMST6 expression is up-regulated by salt stress and sugars
OsMST6	Os07g0559700	LOC_Os07g37320	grain filling	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	In developing seeds, OsMST6 expression level is high at the early and middle grain filling stages and gradually declines later
OsMST6	Os07g0559700	LOC_Os07g37320	leaf	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	RNA in situ hybridization analysis indicated that OsMST6 is predominantly expressed in the vascular parenchyma of the chalazal vein, cross-cells, nucellar tissue and endosperm of young seeds, in mesophyll cells of source leaf blades, and in pollens and the connective vein of anthers
OsMST6	Os07g0559700	LOC_Os07g37320	seed	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	In developing seeds, OsMST6 expression level is high at the early and middle grain filling stages and gradually declines later
OsMST6	Os07g0559700	LOC_Os07g37320	seed	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	RNA in situ hybridization analysis indicated that OsMST6 is predominantly expressed in the vascular parenchyma of the chalazal vein, cross-cells, nucellar tissue and endosperm of young seeds, in mesophyll cells of source leaf blades, and in pollens and the connective vein of anthers
OsMST6	Os07g0559700	LOC_Os07g37320	seed	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	The physiological role of OsMST6 for seed development and its roles in other sink and source tissues are discussed
OsMST6	Os07g0559700	LOC_Os07g37320	seed development	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	The physiological role of OsMST6 for seed development and its roles in other sink and source tissues are discussed
OsMST8	Os01g0567500	LOC_Os01g38670	transporter	Effects of chilling on male gametophyte development in rice	Expression of rice anther specific monosaccharide transporter (OsMST8) is greatly affected by chilling treatment
OsMST8	Os01g0567500	LOC_Os01g38670	chilling	Effects of chilling on male gametophyte development in rice	Expression of rice anther specific monosaccharide transporter (OsMST8) is greatly affected by chilling treatment
OsMST8	Os01g0567500	LOC_Os01g38670	chilling	Effects of chilling on male gametophyte development in rice	Perturbed carbohydrate metabolism, which is particularly triggered by repressed genes OsINV4 and OsMST8 during chilling, causes unusual starch storage in the endothecium and this also contributes to other symptoms such as vacuolation and poor microspore wall formation
OsMST8	Os01g0567500	LOC_Os01g38670	anther	Effects of chilling on male gametophyte development in rice	Expression of rice anther specific monosaccharide transporter (OsMST8) is greatly affected by chilling treatment
OsMST8	Os01g0567500	LOC_Os01g38670	microspore	Effects of chilling on male gametophyte development in rice	Perturbed carbohydrate metabolism, which is particularly triggered by repressed genes OsINV4 and OsMST8 during chilling, causes unusual starch storage in the endothecium and this also contributes to other symptoms such as vacuolation and poor microspore wall formation
OsMST8	Os01g0567500	LOC_Os01g38670	starch	Effects of chilling on male gametophyte development in rice	Perturbed carbohydrate metabolism, which is particularly triggered by repressed genes OsINV4 and OsMST8 during chilling, causes unusual starch storage in the endothecium and this also contributes to other symptoms such as vacuolation and poor microspore wall formation
OsMT-I-4b|OsMT1c	Os12g0568200	LOC_Os12g38051	seedling	Expression patterns of the rice class I metallothionein gene family in response to lead stress in rice seedlings and functional complementation of its members in lead-sensitive yeast cells	Pb2+ induced the expression of 6 OsMT-I genes in seedling shoots, but had no obvious effects on the expression of OsMT-I-1a, OsMT-I-1b, OsMT-I-4a and OsMT-I-4b
OsMT-I-4b|OsMT1c	Os12g0568200	LOC_Os12g38051	shoot	Expression patterns of the rice class I metallothionein gene family in response to lead stress in rice seedlings and functional complementation of its members in lead-sensitive yeast cells	Pb2+ induced the expression of 6 OsMT-I genes in seedling shoots, but had no obvious effects on the expression of OsMT-I-1a, OsMT-I-1b, OsMT-I-4a and OsMT-I-4b
OsMT-II-1a	Os10g0542100	LOC_Os10g39610	seed	Characterization of a rice class II metallothionein gene: tissue expression patterns and induction in response to abiotic factors	Northern blot analysis showed that accumulation of OsMT-II-1a mRNA is specifically abundant in developing seeds and 2-day glumes after pollination, and OsMT-II-1a transcription can markedly be induced by H2O2, paraquat, SNP, ethephon, ABA and SA, but barely by metal ions or other exogenous abiotic factors such as low temperature and PEG
OsMT-II-1a	Os10g0542100	LOC_Os10g39610	seed	Characterization of a rice class II metallothionein gene: tissue expression patterns and induction in response to abiotic factors	Taken together, the above results suggest that the processes of pollination and seed development might be mediated, at least in part, by expression of the OsMT-II-1a gene that is regulated by several abiotic factors
OsMT-II-1a	Os10g0542100	LOC_Os10g39610	ABA	Characterization of a rice class II metallothionein gene: tissue expression patterns and induction in response to abiotic factors	Northern blot analysis showed that accumulation of OsMT-II-1a mRNA is specifically abundant in developing seeds and 2-day glumes after pollination, and OsMT-II-1a transcription can markedly be induced by H2O2, paraquat, SNP, ethephon, ABA and SA, but barely by metal ions or other exogenous abiotic factors such as low temperature and PEG
OsMT-II-1a	Os10g0542100	LOC_Os10g39610	seed development	Characterization of a rice class II metallothionein gene: tissue expression patterns and induction in response to abiotic factors	Taken together, the above results suggest that the processes of pollination and seed development might be mediated, at least in part, by expression of the OsMT-II-1a gene that is regulated by several abiotic factors
OsMT-II-1a	Os10g0542100	LOC_Os10g39610	temperature	Characterization of a rice class II metallothionein gene: tissue expression patterns and induction in response to abiotic factors	Northern blot analysis showed that accumulation of OsMT-II-1a mRNA is specifically abundant in developing seeds and 2-day glumes after pollination, and OsMT-II-1a transcription can markedly be induced by H2O2, paraquat, SNP, ethephon, ABA and SA, but barely by metal ions or other exogenous abiotic factors such as low temperature and PEG
OsMT|OsMEX1	Os04g0602400	LOC_Os04g51330	chloroplast	Expression and functional analysis of rice plastidic maltose transporter, OsMEX1	OsMEX1-green fluorescent protein fusion experiment confirmed that OsMEX1 localizes at the chloroplast envelope in both rice and Arabidopsis
OsMT|OsMEX1	Os04g0602400	LOC_Os04g51330	transporter	Expression and functional analysis of rice plastidic maltose transporter, OsMEX1	This result demonstrates that OsMEX1 functions as a plastidic maltose transporter in Arabidopsis
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	zinc	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	Both transgenic plants and yeasts harboring OsMT1a accumulated more Zn(2+) than wild type controls, suggesting OsMT1a is most likely to be involved in zinc homeostasis
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	zinc	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	Furthermore, the transcripts of several Zn(2+)-induced CCCH zinc finger transcription factors accumulated in OsMT1a transgenic plants, suggesting that OsMT1a not only participates directly in ROS scavenging pathway but also regulates expression of the zinc finger transcription factors via the alteration of Zn(2+) homeostasis, which leads to improved plant stress tolerance
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	zinc	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	root	A metallothionein-like protein of rice (rgMT) functions in E. coli and its gene expression is induced by abiotic stresses	The rgMT gene expression was induced in rice leaves and roots under several abiotic stresses from salts (NaCl and NaHCO3), drought (PEG) and metals (CuCl2, ZnCl2, CdCl2)
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	transcription factor	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	Furthermore, the transcripts of several Zn(2+)-induced CCCH zinc finger transcription factors accumulated in OsMT1a transgenic plants, suggesting that OsMT1a not only participates directly in ROS scavenging pathway but also regulates expression of the zinc finger transcription factors via the alteration of Zn(2+) homeostasis, which leads to improved plant stress tolerance
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	abiotic stress	A metallothionein-like protein of rice (rgMT) functions in E. coli and its gene expression is induced by abiotic stresses	The rgMT gene expression was induced in rice leaves and roots under several abiotic stresses from salts (NaCl and NaHCO3), drought (PEG) and metals (CuCl2, ZnCl2, CdCl2)
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	abiotic stress	A metallothionein-like protein of rice (rgMT) functions in E. coli and its gene expression is induced by abiotic stresses	A metallothionein-like protein of rice (rgMT) functions in E. coli and its gene expression is induced by abiotic stresses
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	root	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	Expression analysis revealed that OsMT1a predominantly expressed in the roots, and was induced by dehydration
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	salt	A metallothionein-like protein of rice (rgMT) functions in E. coli and its gene expression is induced by abiotic stresses	The rgMT gene expression was induced in rice leaves and roots under several abiotic stresses from salts (NaCl and NaHCO3), drought (PEG) and metals (CuCl2, ZnCl2, CdCl2)
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	drought tolerance	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	drought	A metallothionein-like protein of rice (rgMT) functions in E. coli and its gene expression is induced by abiotic stresses	The rgMT gene expression was induced in rice leaves and roots under several abiotic stresses from salts (NaCl and NaHCO3), drought (PEG) and metals (CuCl2, ZnCl2, CdCl2)
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	drought	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	Transgenic rice plants overexpressing OsMT1a demonstrated enhanced tolerance to drought
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	drought	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	homeostasis	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	Both transgenic plants and yeasts harboring OsMT1a accumulated more Zn(2+) than wild type controls, suggesting OsMT1a is most likely to be involved in zinc homeostasis
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	homeostasis	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	Furthermore, the transcripts of several Zn(2+)-induced CCCH zinc finger transcription factors accumulated in OsMT1a transgenic plants, suggesting that OsMT1a not only participates directly in ROS scavenging pathway but also regulates expression of the zinc finger transcription factors via the alteration of Zn(2+) homeostasis, which leads to improved plant stress tolerance
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	homeostasis	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	root	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	Phenotypic analysis revealed that OsMT1e overexpression enhanced the rice growth concerning the increased shoot or root elongation, dry weight and chlorophyll contents, whereas the RNAi lines displayed a sensitive growth phenotype compared to wild-type
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	growth	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	Phenotypic analysis revealed that OsMT1e overexpression enhanced the rice growth concerning the increased shoot or root elongation, dry weight and chlorophyll contents, whereas the RNAi lines displayed a sensitive growth phenotype compared to wild-type
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	shoot	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	Phenotypic analysis revealed that OsMT1e overexpression enhanced the rice growth concerning the increased shoot or root elongation, dry weight and chlorophyll contents, whereas the RNAi lines displayed a sensitive growth phenotype compared to wild-type
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	seed	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	OsMT1e was dominantly expressed in roots at all developmental stages and, to less extent, expressed in leaves at vegetative and seed filling stages
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	tolerance	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	Expression of OsMT1e in a yeast Cd-sensitive strain ycf1 conferred cellular tolerance to Cd, even though the ycf1 + OsMT1e cells accumulated more Cd than the control cells (ycf1 + pYES2)
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	vegetative	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	OsMT1e was dominantly expressed in roots at all developmental stages and, to less extent, expressed in leaves at vegetative and seed filling stages
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	root elongation	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	Phenotypic analysis revealed that OsMT1e overexpression enhanced the rice growth concerning the increased shoot or root elongation, dry weight and chlorophyll contents, whereas the RNAi lines displayed a sensitive growth phenotype compared to wild-type
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	nucleus	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	OsMT1e was mainly targeted to the nucleus and substantially induced by Cd exposure
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	cadmium	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	chlorophyll content	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	Phenotypic analysis revealed that OsMT1e overexpression enhanced the rice growth concerning the increased shoot or root elongation, dry weight and chlorophyll contents, whereas the RNAi lines displayed a sensitive growth phenotype compared to wild-type
OsMT1a|rgMT|OsMT1e	Os11g0704500	LOC_Os11g47809	seed filling	Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation	OsMT1e was dominantly expressed in roots at all developmental stages and, to less extent, expressed in leaves at vegetative and seed filling stages
OsMT1d	Os12g0571100	LOC_Os12g38300	leaf	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.
OsMT1d	Os12g0571100	LOC_Os12g38300	senescence	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.
OsMT2b	Os05g0111300	LOC_Os05g02070	adventitious root	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	In contrast with wild-type plants, OsMT2b-RNA interference (RNAi) transgenic plants had serious handicap in plant growth and root formation, whereas OsMT2b-overexpressing transformants were dwarfed and presented more adventitious roots and big lateral roots
OsMT2b	Os05g0111300	LOC_Os05g02070	seed	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	Taken together, these results indicate a possible feedback regulation mechanism of OsMT2b to the level of endogenous cytokinins that is involved in root development and seed embryo germination of rice
OsMT2b	Os05g0111300	LOC_Os05g02070	seed	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice
OsMT2b	Os05g0111300	LOC_Os05g02070	bacterial blight	Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice	Transgenic plants overexpressing OsMT2b showed increased susceptibility to bacterial blight and blast fungus
OsMT2b	Os05g0111300	LOC_Os05g02070	meristem	The promoter and the 5'-untranslated region of rice metallothionein OsMT2b gene are capable of directing high-level gene expression in germinated rice embryos	Histochemical staining analysis of transgenic rice carrying OsMT2b::GUS chimeric gene showed that high-level GUS activity was detected in germinated embryos and at the meristematic part of other tissues during germination
OsMT2b	Os05g0111300	LOC_Os05g02070	root	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	OsMT2b was preferentially expressed in rice immature panicles, scutellum of germinating embryos, and primordium of lateral roots
OsMT2b	Os05g0111300	LOC_Os05g02070	root	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	In contrast with wild-type plants, OsMT2b-RNA interference (RNAi) transgenic plants had serious handicap in plant growth and root formation, whereas OsMT2b-overexpressing transformants were dwarfed and presented more adventitious roots and big lateral roots
OsMT2b	Os05g0111300	LOC_Os05g02070	root	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	Taken together, these results indicate a possible feedback regulation mechanism of OsMT2b to the level of endogenous cytokinins that is involved in root development and seed embryo germination of rice
OsMT2b	Os05g0111300	LOC_Os05g02070	root	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice
OsMT2b	Os05g0111300	LOC_Os05g02070	growth	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	In contrast with wild-type plants, OsMT2b-RNA interference (RNAi) transgenic plants had serious handicap in plant growth and root formation, whereas OsMT2b-overexpressing transformants were dwarfed and presented more adventitious roots and big lateral roots
OsMT2b	Os05g0111300	LOC_Os05g02070	root development	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	Taken together, these results indicate a possible feedback regulation mechanism of OsMT2b to the level of endogenous cytokinins that is involved in root development and seed embryo germination of rice
OsMT2b	Os05g0111300	LOC_Os05g02070	root development	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice
OsMT2b	Os05g0111300	LOC_Os05g02070	panicle	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	OsMT2b was preferentially expressed in rice immature panicles, scutellum of germinating embryos, and primordium of lateral roots
OsMT2b	Os05g0111300	LOC_Os05g02070	seedling	The promoter and the 5'-untranslated region of rice metallothionein OsMT2b gene are capable of directing high-level gene expression in germinated rice embryos	A rice subfamily p2 (type 2) MT gene, OsMT2b, has been shown previously to exhibit the most abundant gene expression in young rice seedling
OsMT2b	Os05g0111300	LOC_Os05g02070	seedling	The promoter and the 5'-untranslated region of rice metallothionein OsMT2b gene are capable of directing high-level gene expression in germinated rice embryos	We found that the OsMT2b gene is strongly and differentially expressed in germinated rice embryos during seed germination and seedling development
OsMT2b	Os05g0111300	LOC_Os05g02070	dwarf	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	In contrast with wild-type plants, OsMT2b-RNA interference (RNAi) transgenic plants had serious handicap in plant growth and root formation, whereas OsMT2b-overexpressing transformants were dwarfed and presented more adventitious roots and big lateral roots
OsMT2b	Os05g0111300	LOC_Os05g02070	seed germination	The promoter and the 5'-untranslated region of rice metallothionein OsMT2b gene are capable of directing high-level gene expression in germinated rice embryos	We found that the OsMT2b gene is strongly and differentially expressed in germinated rice embryos during seed germination and seedling development
OsMT2b	Os05g0111300	LOC_Os05g02070	blast	Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice	We found that the expression of a metallothionein gene (OsMT2b) was synergically down-regulated by OsRac1 and rice (Oryza sativa) blast-derived elicitors
OsMT2b	Os05g0111300	LOC_Os05g02070	blast	Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice	Transgenic plants overexpressing OsMT2b showed increased susceptibility to bacterial blight and blast fungus
OsMT2b	Os05g0111300	LOC_Os05g02070	cytokinin	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	Here, we characterized rice (Oryza sativa) METALLOTHIONEIN2b (OsMT2b) molecularly and found that its expression was down-regulated by cytokinins
OsMT2b	Os05g0111300	LOC_Os05g02070	cytokinin	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	Taken together, these results indicate a possible feedback regulation mechanism of OsMT2b to the level of endogenous cytokinins that is involved in root development and seed embryo germination of rice
OsMT2b	Os05g0111300	LOC_Os05g02070	cytokinin	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice
OsMT2b	Os05g0111300	LOC_Os05g02070	lateral root	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	OsMT2b was preferentially expressed in rice immature panicles, scutellum of germinating embryos, and primordium of lateral roots
OsMT2b	Os05g0111300	LOC_Os05g02070	lateral root	Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice	In contrast with wild-type plants, OsMT2b-RNA interference (RNAi) transgenic plants had serious handicap in plant growth and root formation, whereas OsMT2b-overexpressing transformants were dwarfed and presented more adventitious roots and big lateral roots
OsMT2b	Os05g0111300	LOC_Os05g02070	seed	The promoter and the 5'-untranslated region of rice metallothionein OsMT2b gene are capable of directing high-level gene expression in germinated rice embryos	A rice subfamily p2 (type 2) MT gene, OsMT2b, has been shown previously to exhibit the most abundant gene expression in young rice seedling
OsMT2b	Os05g0111300	LOC_Os05g02070	seed	The promoter and the 5'-untranslated region of rice metallothionein OsMT2b gene are capable of directing high-level gene expression in germinated rice embryos	We found that the OsMT2b gene is strongly and differentially expressed in germinated rice embryos during seed germination and seedling development
OsMT2b	Os05g0111300	LOC_Os05g02070	blight	Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice	Transgenic plants overexpressing OsMT2b showed increased susceptibility to bacterial blight and blast fungus
OsMT2b	Os05g0111300	LOC_Os05g02070	stem	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.	Expression of OsMT2b was found to be regulated negatively by ethylene and hydrogen peroxide in rice stem node under flooding stress, but little is known about its response to sugar depletion
OsMT2b	Os05g0111300	LOC_Os05g02070	ethylene	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.	Expression of OsMT2b was found to be regulated negatively by ethylene and hydrogen peroxide in rice stem node under flooding stress, but little is known about its response to sugar depletion
OsMT2b	Os05g0111300	LOC_Os05g02070	sugar	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.
OsMT2b	Os05g0111300	LOC_Os05g02070	sugar	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.	A 146-bp sugar response complex MTSRC is identified in the promoter of rice metallothionein OsMT2b gene conferring high-level expression of luciferase reporter gene and bioactive recombinant haFGF in transgenic rice
OsMT2b	Os05g0111300	LOC_Os05g02070	sugar	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.	Expression of OsMT2b was found to be regulated negatively by ethylene and hydrogen peroxide in rice stem node under flooding stress, but little is known about its response to sugar depletion
OsMT2b	Os05g0111300	LOC_Os05g02070	sugar	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.	We found that the expression of OsMT2b gene is induced by sugar starvation in both rice suspension cells and germinated embryos
OsMT2b	Os05g0111300	LOC_Os05g02070	sugar	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.	Deletion analysis and functional assay of the OsMT2b promoter revealed that the 5'-flanking region of the OsMT2b between nucleotides -<U+2009>351 and -<U+2009>121, which contains the sugar response complex (-<U+2009>266 to -<U+2009>121, designated MTSRC) is responsible for high-level promoter activity under sugar starvation
OsMT2b	Os05g0111300	LOC_Os05g02070	node	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.	Expression of OsMT2b was found to be regulated negatively by ethylene and hydrogen peroxide in rice stem node under flooding stress, but little is known about its response to sugar depletion
OsMTA2	Os02g0672600	LOC_Os02g45110	methyltransferase	The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice.	In this study, we reported that OsFIP and OsMTA2 are the components of m6A RNA methyltransferase complex in rice and uncovered a previously unknown function of m6A RNA methylation in regulation of plant sporogenesis
OsMTA2	Os02g0672600	LOC_Os02g45110	growth	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OsMTA2	Os02g0672600	LOC_Os02g45110	growth	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
OsMTA2	Os02g0672600	LOC_Os02g45110	development	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OsMTA2	Os02g0672600	LOC_Os02g45110	development	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
OsMTA2	Os02g0672600	LOC_Os02g45110	pollen	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OsMTA2	Os02g0672600	LOC_Os02g45110	pollen	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
OsMTA2	Os02g0672600	LOC_Os02g45110	plant growth	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OsMTA2	Os02g0672600	LOC_Os02g45110	plant growth	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
OsMTA2	Os02g0672600	LOC_Os02g45110	pollen development	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2
OsMTA2	Os02g0672600	LOC_Os02g45110	pollen development	OseIF3h Regulates Plant Growth and Pollen Development at Translational Level Presumably through Interaction with OsMTA2	Therefore, we infer that OseIF3h interacts with OsMTA2 to target a particular subset of genes at translational level, regulating plant growth and pollen development
Osmtd1	Os08g0441300	LOC_Os08g34258	architecture	A T-DNA insertion mutant Osmtd1 aas altered in architecture by upregulating MicroRNA156f in rice.	A T-DNA insertion mutant Osmtd1 aas altered in architecture by upregulating MicroRNA156f in rice.
Osmtd1	Os08g0441300	LOC_Os08g34258	dwarf	A T-DNA insertion mutant Osmtd1 aas altered in architecture by upregulating MicroRNA156f in rice.	Here, we identified a T-DNA insertion mutant Osmtd1 (Oryza sativa multi-tillering and dwarf mutant)
Osmtd1	Os08g0441300	LOC_Os08g34258	leaf	The Copy Number Variation of OsMTD1 Regulates Rice Plant Architecture	Moreover, we revealed that OsMTD1 not only influences rice tiller number and leaf angle, but also represses pri-miR156f transcription in the CNV region
Osmtd1	Os08g0441300	LOC_Os08g34258	tiller	The Copy Number Variation of OsMTD1 Regulates Rice Plant Architecture	Moreover, we revealed that OsMTD1 not only influences rice tiller number and leaf angle, but also represses pri-miR156f transcription in the CNV region
Osmtd1	Os08g0441300	LOC_Os08g34258	architecture	The Copy Number Variation of OsMTD1 Regulates Rice Plant Architecture	The Copy Number Variation of OsMTD1 Regulates Rice Plant Architecture
Osmtd1	Os08g0441300	LOC_Os08g34258	plant architecture	The Copy Number Variation of OsMTD1 Regulates Rice Plant Architecture	The Copy Number Variation of OsMTD1 Regulates Rice Plant Architecture
Osmtd1	Os08g0441300	LOC_Os08g34258	tiller number	The Copy Number Variation of OsMTD1 Regulates Rice Plant Architecture	Moreover, we revealed that OsMTD1 not only influences rice tiller number and leaf angle, but also represses pri-miR156f transcription in the CNV region
Osmtd1	Os08g0441300	LOC_Os08g34258	leaf angle	The Copy Number Variation of OsMTD1 Regulates Rice Plant Architecture	Moreover, we revealed that OsMTD1 not only influences rice tiller number and leaf angle, but also represses pri-miR156f transcription in the CNV region
OsMTI-1b	Os03g0288000	LOC_Os03g17870	tolerance	Heterologous expression of a rice metallothionein isoform (OsMTI-1b) in Saccharomyces cerevisiae enhances cadmium, hydrogen peroxide and ethanol tolerance.	cerevisiae cells expressing OsMTI-1b showed more tolerance to Cd(2+) and accumulated more Cd(2+) ions when they were grown in the medium containing CdCl(2)
OsMTI-3a	Os01g0200700	LOC_Os01g10400	metallolthionein	Functional characterization of a type 3 metallolthionein isoform (OsMTI-3a) from  rice	Functional characterization of a type 3 metallolthionein isoform (OsMTI-3a) from  rice
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	vascular bundle	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Both OsMT2b and OsMT2c were mainly and constitutively expressed in the phloem region of enlarged and diffuse vascular bundles in the nodes and of the anther
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	grain	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Knockout of either OsMT2b or OsMT2c increased zinc (Zn) accumulation in the nodes, but decreased Zn distribution to the panicle, resulting in decreased grain yield
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	grain	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Our results suggest that both OsMT2b and OsMT2c play an important role mainly in the distribution of Zn to grain through chelation and subsequent transport of Zn in the phloem in rice
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	anther	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Both OsMT2b and OsMT2c were mainly and constitutively expressed in the phloem region of enlarged and diffuse vascular bundles in the nodes and of the anther
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	grain yield	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Knockout of either OsMT2b or OsMT2c increased zinc (Zn) accumulation in the nodes, but decreased Zn distribution to the panicle, resulting in decreased grain yield
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	yield	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Knockout of either OsMT2b or OsMT2c increased zinc (Zn) accumulation in the nodes, but decreased Zn distribution to the panicle, resulting in decreased grain yield
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	zinc	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Knockout of either OsMT2b or OsMT2c increased zinc (Zn) accumulation in the nodes, but decreased Zn distribution to the panicle, resulting in decreased grain yield
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	phloem	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Both OsMT2b and OsMT2c were mainly and constitutively expressed in the phloem region of enlarged and diffuse vascular bundles in the nodes and of the anther
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	phloem	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Our results suggest that both OsMT2b and OsMT2c play an important role mainly in the distribution of Zn to grain through chelation and subsequent transport of Zn in the phloem in rice
OsMTI2B|OsMT2c	Os01g0974200	LOC_Os01g74300	Zn distribution	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain	Knockout of either OsMT2b or OsMT2c increased zinc (Zn) accumulation in the nodes, but decreased Zn distribution to the panicle, resulting in decreased grain yield
OsMTN	Os06g0112200	LOC_Os06g02220	submergence	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)	OsMTN transcripts and OsMTN-specific activity increased slowly and in parallel upon submergence, indicating that regulation occurred mainly at the transcriptional level
OsMTN	Os06g0112200	LOC_Os06g02220	submergence	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)
OsMTN	Os06g0112200	LOC_Os06g02220	ethylene	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)	Neither ethylene, MTA, nor Met regulated OsMTN expression
OsMTN	Os06g0112200	LOC_Os06g02220	ethylene	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)
OsMTOPVIB	Os06g0708200	LOC_Os06g49450	meiotic	OsMTOPVIB promotes meiotic DNA double-strand break formation in rice	OsMTOPVIB promotes meiotic DNA double-strand break formation in rice
OsMTOPVIB	Os06g0708200	LOC_Os06g49450	meiotic	OsMTOPVIB is required for meiotic bipolar spindle assembly.	OsMTOPVIB is required for meiotic bipolar spindle assembly.
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	tolerance	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	stress	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.	Real time RT-PCR analysis demonstrated OsMTP11 expression was substantially enhanced following 4 h under Cd, Zn, Ni, and Mn treatments, suggesting possible roles of OsMTP11 involvement in heavy metal stress responses
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	stress	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.	DNA methylation assays of genomic DNA in rice treated with Cd, Zn, Ni, and Mn revealed that decreased DNA methylation levels were present in the OsMTP11 promoter region, which was consistent with OsMTP11 induced-expression patterns resulting from heavy metal stress
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	Al tolerance	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	manganese	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	stress response	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.	Real time RT-PCR analysis demonstrated OsMTP11 expression was substantially enhanced following 4 h under Cd, Zn, Ni, and Mn treatments, suggesting possible roles of OsMTP11 involvement in heavy metal stress responses
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	transporter	OsMTP11 is localised at the Golgi and contributes to Mn tolerance.	This indicates their importance for OsMTP11 function and is a starting point for refining transporter activity/specificity
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	growth	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	Knockdown of OsMTP11 resulted in growth inhibition in the presence of high concentrations of Mn, and also led to increased accumulation of Mn in the shoots and roots
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	tolerance	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	The expression of OsMTP11 was found to enhance Mn tolerance in the Mn-sensitive yeast mutant pmr1
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	tolerance	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	The overexpression of OsMTP11 was found to enhance Mn tolerance in rice, and under supplementation with a toxic level of Mn, decreased Mn concentration was observed in the shoots and roots
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	tolerance	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	These findings suggest that OsMTP11 is a TGN-localized Mn transporter that is required for Mn homeostasis and contributes towards Mn tolerance in rice
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	homeostasis	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	These findings suggest that OsMTP11 is a TGN-localized Mn transporter that is required for Mn homeostasis and contributes towards Mn tolerance in rice
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	transporter	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	Here we report on the rice gene OsMTP11 that encodes a putative CDF transporter that is homologous to members of the Mn-CDF cluster
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	transporter	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	These findings suggest that OsMTP11 is a TGN-localized Mn transporter that is required for Mn homeostasis and contributes towards Mn tolerance in rice
OsMTP11	Os01g0837700|Os01g0837800	LOC_Os01g62070	plasma membrane	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	Subcellular localization in rice protoplasts and tobacco epidermal cells revealed that OsMTP11 localizes to the trans-Golgi network (TGN), and a significant relocalization to the plasma membrane can be triggered by high extracellular Mn in tobacco epidermal cells
OsMUS81	Os01g0948100	LOC_Os01g71960	DNA damaging	Two alternatively spliced transcripts generated from OsMUS81, a rice homolog of yeast MUS81, are up-regulated by DNA-damaging treatments.	Two alternatively spliced transcripts generated from OsMUS81, a rice homolog of yeast MUS81, are up-regulated by DNA-damaging treatments.
OsMUS81	Os01g0948100	LOC_Os01g71960	homologous recombination	Two alternatively spliced transcripts generated from OsMUS81, a rice homolog of yeast MUS81, are up-regulated by DNA-damaging treatments.	These findings suggest that OsMus81 functions in maintaining genome integrity through homologous recombination.
OsMUS81	Os01g0948100	LOC_Os01g71960	recombination	MUS81 is required for atypical recombination intermediate resolution but not crossover designation in rice	MUS81 is required for atypical recombination intermediate resolution but not crossover designation in rice
OsMUTE	Os05g0597000	LOC_Os05g51820	stomatal	Multiple transcriptional factors control stomata development in rice.	More importantly, we found that OsSCR/OsSHR controls the initiation of stomatal lineage cells and the formation of subsidiary cells, and the transcription of OsSCR is activated by OsSPCH and OsMUTE
OsMY1	Os01g0757600	LOC_Os01g55280	panicle	Isolation and characterization of OsMY1, a putative partner of OsRac5 from Oryza sativa L	One of its putative partners, OsMY1, was isolated by yeast two-hybrid screening from rice panicle cDNA library
OsMY1	Os01g0757600	LOC_Os01g55280	panicle	Isolation and characterization of OsMY1, a putative partner of OsRac5 from Oryza sativa L	Real-time PCR shows that OsMY1 and OsRac5 are coordinately expressed in rice leaves and panicles with similar expression patterns
OsMY1	Os01g0757600	LOC_Os01g55280	growth	Isolation and characterization of OsMY1, a putative partner of OsRac5 from Oryza sativa L	Our results suggest that OsMY1 is an important target of OsRac5 and that these two genes are involved in the same biological processes in rice growth and development
Osmyb1	Os05g0429900	LOC_Os05g35500	flower	Cloning and expression of five myb-related genes from rice seed	In seed, the mRNA levels of Osmyb1 and Osmyb4 genes reached a maximum at 14 days after flowering (DAF), suggesting that these genes may play a role in seed maturation
Osmyb1	Os05g0429900	LOC_Os05g35500	seed	Cloning and expression of five myb-related genes from rice seed	In seed, the mRNA levels of Osmyb1 and Osmyb4 genes reached a maximum at 14 days after flowering (DAF), suggesting that these genes may play a role in seed maturation
OsMYB102	Os06g0637500	LOC_Os06g43090	leaf	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.
OsMYB102	Os06g0637500	LOC_Os06g43090	leaf	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Moreover, an osmyb102 knockout mutant showed an accelerated senescence phenotype under dark-induced and ABA-induced leaf senescence conditions
OsMYB102	Os06g0637500	LOC_Os06g43090	leaf	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Collectively, these results demonstrate that OsMYB102 plays a critical role in leaf senescence by downregulating ABA accumulation and ABA signaling responses
OsMYB102	Os06g0637500	LOC_Os06g43090	leaf senescence	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.
OsMYB102	Os06g0637500	LOC_Os06g43090	leaf senescence	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Moreover, an osmyb102 knockout mutant showed an accelerated senescence phenotype under dark-induced and ABA-induced leaf senescence conditions
OsMYB102	Os06g0637500	LOC_Os06g43090	leaf senescence	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Collectively, these results demonstrate that OsMYB102 plays a critical role in leaf senescence by downregulating ABA accumulation and ABA signaling responses
OsMYB102	Os06g0637500	LOC_Os06g43090	transcription factor	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.
OsMYB102	Os06g0637500	LOC_Os06g43090	senescence	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.
OsMYB102	Os06g0637500	LOC_Os06g43090	senescence	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Here, we examined the rice MYB TF gene OsMYB102 and found that an OsMYB102 T-DNA activation-tagged line (termed osmyb102-D), which constitutively expresses OsMYB102 under the control of four tandem repeats of the 35S promoter, and OsMYB102-overexpressing transgenic lines (35S:OsMYB102 and 35S:GFP-OsMYB102) maintain green leaves much longer than the wild type under natural, dark-induced, and abscisic acid (ABA)-induced senescence conditions
OsMYB102	Os06g0637500	LOC_Os06g43090	senescence	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Moreover, an osmyb102 knockout mutant showed an accelerated senescence phenotype under dark-induced and ABA-induced leaf senescence conditions
OsMYB102	Os06g0637500	LOC_Os06g43090	senescence	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Further studies demonstrated that overexpression of OsMYB102 regulates the expression of SAGs, including genes associated with ABA degradation and ABA signaling (OsABF4, OsNAP, and OsCYP707A6), under dark-induced senescence conditions
OsMYB102	Os06g0637500	LOC_Os06g43090	senescence	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Collectively, these results demonstrate that OsMYB102 plays a critical role in leaf senescence by downregulating ABA accumulation and ABA signaling responses
OsMYB102	Os06g0637500	LOC_Os06g43090	ABA	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Further studies demonstrated that overexpression of OsMYB102 regulates the expression of SAGs, including genes associated with ABA degradation and ABA signaling (OsABF4, OsNAP, and OsCYP707A6), under dark-induced senescence conditions
OsMYB102	Os06g0637500	LOC_Os06g43090	ABA	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	OsMYB102 inhibits ABA accumulation by directly activating the transcription of OsCYP707A6, which encodes the ABA catabolic enzyme ABSCISIC ACID 8'-HYDROXYLASE
OsMYB102	Os06g0637500	LOC_Os06g43090	ABA	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Collectively, these results demonstrate that OsMYB102 plays a critical role in leaf senescence by downregulating ABA accumulation and ABA signaling responses
OsMYB102	Os06g0637500	LOC_Os06g43090	ABA	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Further studies demonstrated that overexpression of OsMYB102 regulates the expression of SAGs, including genes associated with ABA degradation and ABA signaling (OsABF4, OsNAP, and OsCYP707A6), under dark-induced senescence conditions
OsMYB102	Os06g0637500	LOC_Os06g43090	ABA	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	OsMYB102 inhibits ABA accumulation by directly activating the transcription of OsCYP707A6, which encodes the ABA catabolic enzyme ABSCISIC ACID 8'-HYDROXYLASE
OsMYB102	Os06g0637500	LOC_Os06g43090	ABA	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Collectively, these results demonstrate that OsMYB102 plays a critical role in leaf senescence by downregulating ABA accumulation and ABA signaling responses
OsMYB102	Os06g0637500	LOC_Os06g43090	abscisic acid	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.
OsMYB102	Os06g0637500	LOC_Os06g43090	abscisic acid	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	Here, we examined the rice MYB TF gene OsMYB102 and found that an OsMYB102 T-DNA activation-tagged line (termed osmyb102-D), which constitutively expresses OsMYB102 under the control of four tandem repeats of the 35S promoter, and OsMYB102-overexpressing transgenic lines (35S:OsMYB102 and 35S:GFP-OsMYB102) maintain green leaves much longer than the wild type under natural, dark-induced, and abscisic acid (ABA)-induced senescence conditions
OsMYB102	Os06g0637500	LOC_Os06g43090	abscisic acid	The rice transcription factor OsMYB102 delays leaf senescence by downregulating abscisic acid accumulation and signaling.	OsMYB102 inhibits ABA accumulation by directly activating the transcription of OsCYP707A6, which encodes the ABA catabolic enzyme ABSCISIC ACID 8'-HYDROXYLASE
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	leaf	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	leaf	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	Leaf rolling is one of the important traits in rice (Oryza sativa L
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	leaf	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	Overexpression of OsMYB103L in rice resulted in a rolled leaf phenotype
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	leaf	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	These findings suggest that OsMYB103L may target CESA genes for regulation of cellulose synthesis and could potentially be engineered for desirable leaf shape and mechanical strength in rice
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	transcription factor	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	transcription factor	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	MYB transcription factors are one of the largest gene families and have important roles in plant development, metabolism and stress responses
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	transcription factor	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	In this study, we report the functional characterization of a rice gene, OsMYB103L, which encodes an R2R3-MYB transcription factor
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	leaf shape	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	These findings suggest that OsMYB103L may target CESA genes for regulation of cellulose synthesis and could potentially be engineered for desirable leaf shape and mechanical strength in rice
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	cellulose	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	Further analyses showed that expression levels of several cellulose synthase genes (CESAs) were significantly increased, as was the cellulose content in OsMYB103L overexpressing lines
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	cellulose	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	Knockdown of OsMYB103L by RNA interference led to a decreased level of cellulose content and reduced mechanical strength in leaves
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	cellulose	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	These findings suggest that OsMYB103L may target CESA genes for regulation of cellulose synthesis and could potentially be engineered for desirable leaf shape and mechanical strength in rice
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	breeding	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	) breeding
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	cell wall	CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.	OsMYB103L may also function as a master switch to regulate the expression of several downstream TFs, which involved in secondary cell wall biosynthesis
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	cell wall	CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.	Our findings revealed that OsMYB103L plays an important role in GA-regulating secondary cell wall synthesis, and the manipulation of this gene provide a new strategy to help the straw decay in soil
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	ga	CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.	Furthermore, OsMYB103L physically interacts with SLENDER RICE1 (SLR1), a DELLA repressor of GA signaling, and involved in GA-mediated regulation of cellulose synthesis pathway
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	cellulose	CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.	OsMYB103L mediates cellulose biosynthesis and secondary walls formation mainly through directly binding the CESA4, CESA7, CESA9 and BC1 promoters and regulating their expression
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	cellulose	CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.	Furthermore, OsMYB103L physically interacts with SLENDER RICE1 (SLR1), a DELLA repressor of GA signaling, and involved in GA-mediated regulation of cellulose synthesis pathway
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	GA	CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.	Furthermore, OsMYB103L physically interacts with SLENDER RICE1 (SLR1), a DELLA repressor of GA signaling, and involved in GA-mediated regulation of cellulose synthesis pathway
OsMYB103L|CEF1	Os08g0151300	LOC_Os08g05520	R protein	CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.	Biochemical assays demonstrated that OsMYB103L is a nuclear protein and shows high transcriptional activation activity at C-terminus
OsMYB106	Os08g0433400	LOC_Os08g33660	transcription factor	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress	 Using comparative interactomics, we isolated two OsBAG4-interacting proteins, OsMYB106 (a MYB transcription factor) and OsSUVH7 (a DNA methylation reader), that were crucial for OsHKT1;5 expression
OsMYB106	Os08g0433400	LOC_Os08g33660	salt	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress	 Elimination of the MITE or knockout of OsMYB106 or OsSUVH7 decreased OsHKT1;5 expression and increased salt sensitivity
OsMYB106	Os08g0433400	LOC_Os08g33660	Salt Sensitivity	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress	 Elimination of the MITE or knockout of OsMYB106 or OsSUVH7 decreased OsHKT1;5 expression and increased salt sensitivity
OsMYB106	Os08g0433400	LOC_Os08g33660	stress	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Intriguingly, salt stress facilitates the nuclear relocation of OsDNAJ15 so that it can interact with OsBAG4, and OsDNAJ15 and OsBAG4 synergistically facilitate the DNA-binding activity of OsMYB106 to positively regulate the expression of OsHKT1;5
OsMYB106	Os08g0433400	LOC_Os08g33660	salt	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Intriguingly, salt stress facilitates the nuclear relocation of OsDNAJ15 so that it can interact with OsBAG4, and OsDNAJ15 and OsBAG4 synergistically facilitate the DNA-binding activity of OsMYB106 to positively regulate the expression of OsHKT1;5
OsMYB106	Os08g0433400	LOC_Os08g33660	salt stress	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	 Intriguingly, salt stress facilitates the nuclear relocation of OsDNAJ15 so that it can interact with OsBAG4, and OsDNAJ15 and OsBAG4 synergistically facilitate the DNA-binding activity of OsMYB106 to positively regulate the expression of OsHKT1;5
OsMYB108	Os09g0538400	LOC_Os09g36730	cell wall	OsMYB108 loss-of-function enriches p-coumaroylated and tricin lignin units in rice cell walls	OsMYB108 loss-of-function enriches p-coumaroylated and tricin lignin units in rice cell walls
OsMYB108	Os09g0538400	LOC_Os09g36730	lignin	OsMYB108 loss-of-function enriches p-coumaroylated and tricin lignin units in rice cell walls	OsMYB108 loss-of-function enriches p-coumaroylated and tricin lignin units in rice cell walls
OsMYB108	Os09g0538400	LOC_Os09g36730	lignin	OsMYB108 loss-of-function enriches p-coumaroylated and tricin lignin units in rice cell walls	NMR analysis also showed that the relative abundances of major lignin linkage types were altered in the OsMYB108 mutants
OsMyb1R|LHY-like_chr.2|CMYB1	Os02g0685200	LOC_Os02g46030	stem	CMYB1 encoding a MYB transcriptional activator is involved in abiotic stress and circadian rhythm in rice	Therefore, CMYB1 probably also plays a role in modulating cell cycle in rice stem and node and involves the internodes elongation.
OsMyb1R|LHY-like_chr.2|CMYB1	Os02g0685200	LOC_Os02g46030	transcription activator	CMYB1 encoding a MYB transcriptional activator is involved in abiotic stress and circadian rhythm in rice	Based on the subcellular localization and transcription activation activity, it could be confirmed that CMYB1 functions as a transcription activator in rice cells.
OsMYB1R1	Os01g0192300	LOC_Os01g09640	nucleus	Overexpression of OsMYB1R1-VP64 fusion protein increases grain yield in rice by delaying flowering time.	OsMYB1R1 protein had transcriptional activation activity and was localized to the nucleus
Osmyb2	Os03g0315400	LOC_Os03g20090	salt stress	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	The OsMYB2-overexpressing plants accumulated greater amounts of soluble sugars and proline than wild-type plants under salt stress
Osmyb2	Os03g0315400	LOC_Os03g20090	transporter	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	Overexpression of OsMYB2 enhanced up-regulation of genes encoding proline synthase and transporters
Osmyb2	Os03g0315400	LOC_Os03g20090	abiotic stress	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	This study isolated a rice R2R3-type MYB gene, OsMYB2, and functionally characterized its role in tolerance to abiotic stress by generating transgenic rice plants with overexpressing and RNA interference OsMYB2
Osmyb2	Os03g0315400	LOC_Os03g20090	growth	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	No difference in growth and development between the OsMYB2-overexpressing and wild-type plants was observed under normal growth conditions, but the OsMYB2-overexpressing plants were more tolerant to salt, cold, and dehydration stresses and more sensitive to abscisic acid than wild-type plants
Osmyb2	Os03g0315400	LOC_Os03g20090	transcription factor	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	These findings suggest that OsMYB2 encodes a stress-responsive MYB transcription factor that plays a regulatory role in tolerance of rice to salt, cold, and dehydration stress
Osmyb2	Os03g0315400	LOC_Os03g20090	salt	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	Expression of OsMYB2 was up-regulated by salt, cold, and dehydration stress
Osmyb2	Os03g0315400	LOC_Os03g20090	salt	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	No difference in growth and development between the OsMYB2-overexpressing and wild-type plants was observed under normal growth conditions, but the OsMYB2-overexpressing plants were more tolerant to salt, cold, and dehydration stresses and more sensitive to abscisic acid than wild-type plants
Osmyb2	Os03g0315400	LOC_Os03g20090	salt	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	The OsMYB2-overexpressing plants accumulated greater amounts of soluble sugars and proline than wild-type plants under salt stress
Osmyb2	Os03g0315400	LOC_Os03g20090	salt	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	These findings suggest that OsMYB2 encodes a stress-responsive MYB transcription factor that plays a regulatory role in tolerance of rice to salt, cold, and dehydration stress
Osmyb2	Os03g0315400	LOC_Os03g20090	salt	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice
OsMYB22	Os01g0874300	LOC_Os01g65370	resistance	Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice.	 Among these affected genes, OsCEBiP (chitin elicitor-binding protein precursor) was found to be directly regulated by OsMYB22 and its interacting protein OsMYC2, a key component of JA signaling, and this contributed to temperature-modulated blast resistance
OsMYB22	Os01g0874300	LOC_Os01g65370	ja	Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice.	 Among these affected genes, OsCEBiP (chitin elicitor-binding protein precursor) was found to be directly regulated by OsMYB22 and its interacting protein OsMYC2, a key component of JA signaling, and this contributed to temperature-modulated blast resistance
OsMYB22	Os01g0874300	LOC_Os01g65370	JA	Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice.	 Among these affected genes, OsCEBiP (chitin elicitor-binding protein precursor) was found to be directly regulated by OsMYB22 and its interacting protein OsMYC2, a key component of JA signaling, and this contributed to temperature-modulated blast resistance
OsMYB22	Os01g0874300	LOC_Os01g65370	blast	Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice.	 Among these affected genes, OsCEBiP (chitin elicitor-binding protein precursor) was found to be directly regulated by OsMYB22 and its interacting protein OsMYC2, a key component of JA signaling, and this contributed to temperature-modulated blast resistance
OsMYB22	Os01g0874300	LOC_Os01g65370	blast resistance	Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice.	 Among these affected genes, OsCEBiP (chitin elicitor-binding protein precursor) was found to be directly regulated by OsMYB22 and its interacting protein OsMYC2, a key component of JA signaling, and this contributed to temperature-modulated blast resistance
OsMYB22	Os01g0874300	LOC_Os01g65370	JA signaling	Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice.	 Among these affected genes, OsCEBiP (chitin elicitor-binding protein precursor) was found to be directly regulated by OsMYB22 and its interacting protein OsMYC2, a key component of JA signaling, and this contributed to temperature-modulated blast resistance
OsMYB22	Os01g0874300	LOC_Os01g65370	 ja 	Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice.	 Among these affected genes, OsCEBiP (chitin elicitor-binding protein precursor) was found to be directly regulated by OsMYB22 and its interacting protein OsMYC2, a key component of JA signaling, and this contributed to temperature-modulated blast resistance
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	root	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Furthermore, primary roots of OsMYB2P-1-overexpressing plants were shorter than those in wild-type plants under Pi-sufficient conditions, while primary roots and adventitious roots of OsMYB2P-1-overexpressing plants were longer than those of wild-type plants under Pi-deficient conditions
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	root	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	These results suggest that OsMYB2P-1 may also be associated with the regulation of root system architecture
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	root	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	architecture	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	These results suggest that OsMYB2P-1 may also be associated with the regulation of root system architecture
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	architecture	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	primary root	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Furthermore, primary roots of OsMYB2P-1-overexpressing plants were shorter than those in wild-type plants under Pi-sufficient conditions, while primary roots and adventitious roots of OsMYB2P-1-overexpressing plants were longer than those of wild-type plants under Pi-deficient conditions
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	root architecture	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	transcription factor	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	An R2R3 MYB transcription factor, OsMYB2P-1, was identified from microarray data by monitoring the expression profile of rice (Oryza sativa ssp
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	transcription factor	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	transporter	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	phosphate	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	adventitious root	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Furthermore, primary roots of OsMYB2P-1-overexpressing plants were shorter than those in wild-type plants under Pi-sufficient conditions, while primary roots and adventitious roots of OsMYB2P-1-overexpressing plants were longer than those of wild-type plants under Pi-deficient conditions
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	pi	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Expression of OsMYB2P-1 was induced by Pi starvation
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	pi	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Overexpression of OsMYB2P-1 in Arabidopsis (Arabidopsis thaliana) and rice enhanced tolerance to Pi starvation, while suppression of OsMYB2P-1 by RNA interference in rice rendered the transgenic rice more sensitive to Pi deficiency
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	pi	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsMYB2P-1	Os05g0140100	LOC_Os05g04820	pi	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	These findings demonstrate that OsMYB2P-1 is a novel R2R3 MYB transcriptional factor associated with Pi starvation signaling in rice
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	 The genetic effect of SG3 on grain length was dependent on GS3 status
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	 SG3 overexpression and knockdown plants showed shortened and elongated grains, respectively, which demonstrated that SG3 acts as a negative regulator of grain length
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	 The isolation of the SG3 MYB gene provides new gene resource and contributes to the regulatory network of grain length in rice
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain length	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	 The genetic effect of SG3 on grain length was dependent on GS3 status
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain length	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	 SG3 overexpression and knockdown plants showed shortened and elongated grains, respectively, which demonstrated that SG3 acts as a negative regulator of grain length
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain length	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	 The isolation of the SG3 MYB gene provides new gene resource and contributes to the regulatory network of grain length in rice
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	breeding	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	 SG3 and GS3 were frequently in coupling phase in indica rice, making them good targets for the breeding of cultivars with short or long grains
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	transcriptional regulator	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	 A gene encoding an R2R3 MYB domain transcriptional regulator was identified as the candidate gene for SG3
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	transcription activator	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	 SG3 was preferentially expressed in panicles after flowering, and SG3 acted as a transcription activator
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 The SMG3 allele from M494 causes an increase in the number of grains per panicle but produces smaller grain size and thousand grain weight
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Microscopy analysis shows that SMG3 mainly produces long grains by increasing in both cell length and cell number in the length direction, which thus enhances grain weight by promoting cell expansion and cell proliferation
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Overexpression of SMG3 in rice produces a phenotype with more grains but reduces grain length and weight
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Our results reveal that SMG3 plays an important role in the coordinated regulation of grain size, grain number per panicle, and grain weight, providing a new insight into synergistical modification on the grain appearance quality, grain number per panicle, and grain weight in rice
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain length	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Overexpression of SMG3 in rice produces a phenotype with more grains but reduces grain length and weight
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain size	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 The SMG3 allele from M494 causes an increase in the number of grains per panicle but produces smaller grain size and thousand grain weight
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain size	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Our results reveal that SMG3 plays an important role in the coordinated regulation of grain size, grain number per panicle, and grain weight, providing a new insight into synergistical modification on the grain appearance quality, grain number per panicle, and grain weight in rice
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	panicle	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 The SMG3 allele from M494 causes an increase in the number of grains per panicle but produces smaller grain size and thousand grain weight
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grains per panicle	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 The SMG3 allele from M494 causes an increase in the number of grains per panicle but produces smaller grain size and thousand grain weight
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain number	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Our results reveal that SMG3 plays an important role in the coordinated regulation of grain size, grain number per panicle, and grain weight, providing a new insight into synergistical modification on the grain appearance quality, grain number per panicle, and grain weight in rice
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	nucleus	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 The SMG3 is constitutively expressed in various organs in rice, and the SMG3 protein is located in the nucleus
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	cell proliferation	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Microscopy analysis shows that SMG3 mainly produces long grains by increasing in both cell length and cell number in the length direction, which thus enhances grain weight by promoting cell expansion and cell proliferation
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain weight	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 The SMG3 allele from M494 causes an increase in the number of grains per panicle but produces smaller grain size and thousand grain weight
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain weight	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Microscopy analysis shows that SMG3 mainly produces long grains by increasing in both cell length and cell number in the length direction, which thus enhances grain weight by promoting cell expansion and cell proliferation
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain weight	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Our results reveal that SMG3 plays an important role in the coordinated regulation of grain size, grain number per panicle, and grain weight, providing a new insight into synergistical modification on the grain appearance quality, grain number per panicle, and grain weight in rice
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	cell expansion	Identification of SMG3, a QTL Coordinately Controls Grain Size, Grain Number per Panicle, and Grain Weight in Rice.	 Microscopy analysis shows that SMG3 mainly produces long grains by increasing in both cell length and cell number in the length direction, which thus enhances grain weight by promoting cell expansion and cell proliferation
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 interacts with another grain size regulator, DGS1
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	grain size	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 interacts with another grain size regulator, DGS1
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	BR	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 and DGS1 are involved in BR signaling
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	BR signaling	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 and DGS1 are involved in BR signaling
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	 BR 	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 and DGS1 are involved in BR signaling
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	Ubiquitin	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 encodes a homolog of Arabidopsis (Arabidopsis thaliana) UBIQUITIN CONJUGATING ENZYME 32, which is a conserved ERAD-associated E2 ubiquitin conjugating enzyme
Osmyb3|SG3|SMG3	Os03g0410000	LOC_Os03g29614	Ubiquitin	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 Further analyses showed that DGS1 is an active E3 ubiquitin ligase and colocates with SMG3 in the ER
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	starch	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	These results suggested that OsMYB30 exhibited a regulatory effect on the breakdown of starch through the regulation of the BMY genes
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	starch	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	These results together suggested that OsMYB30 might be a novel regulator of cold tolerance through the negative regulation of the BMY genes by interacting with OsJAZ9 to fine tune the starch breakdown and the content of maltose which might contribute to the cold tolerance as a compatible solute
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	tolerance	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	tolerance	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	In this study, we characterized a cold-responsive R2R3-type MYB gene OsMYB30 for its regulatory function in cold tolerance in rice (Oryza sativa)
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	tolerance	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	Functional analysis revealed that overexpression of OsMYB30 in rice resulted in increased cold sensitivity, while the osmyb30 knockout mutant showed increased cold tolerance
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	tolerance	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	These results together suggested that OsMYB30 might be a novel regulator of cold tolerance through the negative regulation of the BMY genes by interacting with OsJAZ9 to fine tune the starch breakdown and the content of maltose which might contribute to the cold tolerance as a compatible solute
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	transcription factor	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	cold tolerance	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	cold tolerance	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	In this study, we characterized a cold-responsive R2R3-type MYB gene OsMYB30 for its regulatory function in cold tolerance in rice (Oryza sativa)
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	cold tolerance	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	Functional analysis revealed that overexpression of OsMYB30 in rice resulted in increased cold sensitivity, while the osmyb30 knockout mutant showed increased cold tolerance
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	cold tolerance	The OsMYB30 transcription factor suppresses cold tolerance by interacting with a JAZ protein and suppressing beta-amylase expression.	These results together suggested that OsMYB30 might be a novel regulator of cold tolerance through the negative regulation of the BMY genes by interacting with OsJAZ9 to fine tune the starch breakdown and the content of maltose which might contribute to the cold tolerance as a compatible solute
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	shoot	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	These results indicate that OsMYB5P is associated with the regulation of shoot development and root- system architecture
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	development	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	OsMYB5P protein is localized to the nucleus and functions as a transcription activator in plant development
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	development	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	These results indicate that OsMYB5P is associated with the regulation of shoot development and root- system architecture
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	tolerance	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Overexpression of OsMYB5P in rice and Arabidopsis (Arabidopsis thaliana Col-0) increases tolerance to phosphate starvation, whereas OsMYB5P knock-out through RNA interference increases sensitivity to Pi depletion in rice
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	tolerance	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Together, these results demonstrate that overexpression of OsMYB5P increases tolerance to Pi deficiency in plants by modulating Pi transporters at the transcriptional level in monocots and dicots
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	architecture	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	These results indicate that OsMYB5P is associated with the regulation of shoot development and root- system architecture
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	nucleus	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	OsMYB5P protein is localized to the nucleus and functions as a transcription activator in plant development
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	plant development	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	OsMYB5P protein is localized to the nucleus and functions as a transcription activator in plant development
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	Pi	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Overexpression of OsMYB5P in rice and Arabidopsis (Arabidopsis thaliana Col-0) increases tolerance to phosphate starvation, whereas OsMYB5P knock-out through RNA interference increases sensitivity to Pi depletion in rice
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	Pi	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Overexpression of OsMYB5P led to increased Pi accumulation in shoots and roots
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	Pi	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	In addition, overexpression of OsMYB5P in Arabidopsis triggered increased expression of AtPht1;3, an Arabidopsis Pi transporter, in shoots and roots under normal and Pi-deficient conditions
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	Pi	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Together, these results demonstrate that overexpression of OsMYB5P increases tolerance to Pi deficiency in plants by modulating Pi transporters at the transcriptional level in monocots and dicots
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	transcription activator	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	OsMYB5P protein is localized to the nucleus and functions as a transcription activator in plant development
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	phosphate	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	phosphate	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Overexpression of OsMYB5P in rice and Arabidopsis (Arabidopsis thaliana Col-0) increases tolerance to phosphate starvation, whereas OsMYB5P knock-out through RNA interference increases sensitivity to Pi depletion in rice
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	pi	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Overexpression of OsMYB5P in rice and Arabidopsis (Arabidopsis thaliana Col-0) increases tolerance to phosphate starvation, whereas OsMYB5P knock-out through RNA interference increases sensitivity to Pi depletion in rice
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	pi	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Overexpression of OsMYB5P led to increased Pi accumulation in shoots and roots
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	pi	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	In addition, overexpression of OsMYB5P in Arabidopsis triggered increased expression of AtPht1;3, an Arabidopsis Pi transporter, in shoots and roots under normal and Pi-deficient conditions
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	pi	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Together, these results demonstrate that overexpression of OsMYB5P increases tolerance to Pi deficiency in plants by modulating Pi transporters at the transcriptional level in monocots and dicots
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	phosphate transport	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	phosphate starvation	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Overexpression of OsMYB5P in rice and Arabidopsis (Arabidopsis thaliana Col-0) increases tolerance to phosphate starvation, whereas OsMYB5P knock-out through RNA interference increases sensitivity to Pi depletion in rice
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	phosphate acquisition	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	resistance	Sclerenchyma cell thickening through enhanced lignification induced by OsMYB30 prevents fungal penetration of rice leaves.	Here, we report the involvement of the OsMYB30 gene in the bsr-d1-mediated blast resistance
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	blast	Sclerenchyma cell thickening through enhanced lignification induced by OsMYB30 prevents fungal penetration of rice leaves.	Here, we report the involvement of the OsMYB30 gene in the bsr-d1-mediated blast resistance
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	lignin	Sclerenchyma cell thickening through enhanced lignification induced by OsMYB30 prevents fungal penetration of rice leaves.	We further find that OsMYB30 binds to and activates the promoters of 4-coumarate:coenzyme A ligase genes (Os4CL3 and Os4CL5) resulting in accumulation of lignin subunits G and S
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	blast resistance	Sclerenchyma cell thickening through enhanced lignification induced by OsMYB30 prevents fungal penetration of rice leaves.	Here, we report the involvement of the OsMYB30 gene in the bsr-d1-mediated blast resistance
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	It acts as a positive regulator of cold tolerance by repressing some cold-related genes such as OsWRKY45-1, OsSRFP1, OsCYL4 and OsMYB30
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	cold tolerance	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	It acts as a positive regulator of cold tolerance by repressing some cold-related genes such as OsWRKY45-1, OsSRFP1, OsCYL4 and OsMYB30
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	cold stress	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Under cold stress treatments, the transcription of four cold-related genes OsWRKY45-1, OsSRFP1, OsCYL4, and OsMYB30 was repressed in OsGATA16-overexpressing (OE) rice compared with wild-type (WT)
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	stress	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Under cold stress treatments, the transcription of four cold-related genes OsWRKY45-1, OsSRFP1, OsCYL4, and OsMYB30 was repressed in OsGATA16-overexpressing (OE) rice compared with wild-type (WT)
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	cold	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	Under cold stress treatments, the transcription of four cold-related genes OsWRKY45-1, OsSRFP1, OsCYL4, and OsMYB30 was repressed in OsGATA16-overexpressing (OE) rice compared with wild-type (WT)
OsMYB30|OsMYB5P	Os02g0624300	LOC_Os02g41510	cold	OsGATA16, a GATA Transcription Factor, Confers Cold Tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice	It acts as a positive regulator of cold tolerance by repressing some cold-related genes such as OsWRKY45-1, OsSRFP1, OsCYL4 and OsMYB30
OsMYB305	Os01g0637800	LOC_Os01g45090	nitrogen	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.
OsMYB305	Os01g0637800	LOC_Os01g45090	nitrogen	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Here, we characterized the roles of the MYB transcription factor OsMYB305 in nitrogen uptake and assimilation in rice
OsMYB305	Os01g0637800	LOC_Os01g45090	transcription factor	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Here, we characterized the roles of the MYB transcription factor OsMYB305 in nitrogen uptake and assimilation in rice
OsMYB305	Os01g0637800	LOC_Os01g45090	root	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	OsMYB305 encoded a transcriptional activator and its expression was induced by N deficiency in rice root
OsMYB305	Os01g0637800	LOC_Os01g45090	growth	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Our results revealed that OsMYB305 overexpression suppressed cellulose biosynthesis under low-nitrogen condition, thereby freeing up carbohydrate for nitrate uptake and assimilation and enhancing rice growth
OsMYB305	Os01g0637800	LOC_Os01g45090	shoot	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Under low-N condition, OsMYB305 overexpression significantly increased the tiller number, shoot dry weight and total N concentration
OsMYB305	Os01g0637800	LOC_Os01g45090	tiller	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Under low-N condition, OsMYB305 overexpression significantly increased the tiller number, shoot dry weight and total N concentration
OsMYB305	Os01g0637800	LOC_Os01g45090	cellulose	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Our results revealed that OsMYB305 overexpression suppressed cellulose biosynthesis under low-nitrogen condition, thereby freeing up carbohydrate for nitrate uptake and assimilation and enhancing rice growth
OsMYB305	Os01g0637800	LOC_Os01g45090	nitrate	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Our results revealed that OsMYB305 overexpression suppressed cellulose biosynthesis under low-nitrogen condition, thereby freeing up carbohydrate for nitrate uptake and assimilation and enhancing rice growth
OsMYB305	Os01g0637800	LOC_Os01g45090	tiller number	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Under low-N condition, OsMYB305 overexpression significantly increased the tiller number, shoot dry weight and total N concentration
OsMYB305	Os01g0637800	LOC_Os01g45090	transcriptional activator	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	OsMYB305 encoded a transcriptional activator and its expression was induced by N deficiency in rice root
OsMYB36a	Os08g0248700	LOC_Os08g15020	Casparian strip	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis
OsMYB36a	Os08g0248700	LOC_Os08g15020	root endodermis	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis
OsMYB36b	Os02g0786300|Os02g0786400	LOC_Os02g54520	Casparian strip	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis
OsMYB36b	Os02g0786300|Os02g0786400	LOC_Os02g54520	root endodermis	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis
OsMYB36c	Os03g0771100	LOC_Os03g56090	Casparian strip	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis
OsMYB36c	Os03g0771100	LOC_Os03g56090	root endodermis	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis
OsMYB38	Os02g0641900	LOC_Os02g42870	cold stress	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	The gene was isolated by screening yeast one-hybrid library using the minimal promoter region of the OsMYB38 that is necessary for cold stress-responsive expression
OsMYB38	Os02g0641900	LOC_Os02g42870	cold	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	The gene was isolated by screening yeast one-hybrid library using the minimal promoter region of the OsMYB38 that is necessary for cold stress-responsive expression
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	cold tolerance	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	Transgenic plants overexpressing OsMYB3R-2 exhibited enhanced cold tolerance
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	drought	Overexpression of an R1R2R3 MYB Gene, OsMYB3R-2, Increases Tolerance to Freezing, Drought, and Salt Stress in Transgenic Arabidopsis	Overexpression of an R1R2R3 MYB Gene, OsMYB3R-2, Increases Tolerance to Freezing, Drought, and Salt Stress in Transgenic Arabidopsis
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	mitosis	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	We show that OsMYB3R-2 specifically bound to a mitosis-specific activator cis-element, (T/C)C(T/C)AACGG(T/C)(T/C)A, a conserved sequence that was found in promoters of cyclin genes such as OsCycB1;1 and OsKNOLLE2
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	chilling	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	These results suggest that OsMYB3R-2 targets OsCycB1;1 and regulates the progress of the cell cycle during chilling stress
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	chilling	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	cell cycle	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	These results suggest that OsMYB3R-2 targets OsCycB1;1 and regulates the progress of the cell cycle during chilling stress
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	cell cycle	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	Therefore, a cold resistance mechanism in rice could be mediated by regulating the cell cycle, which is controlled by key genes including OsMYB3R-2
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	cell cycle	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	salt	Overexpression of an R1R2R3 MYB Gene, OsMYB3R-2, Increases Tolerance to Freezing, Drought, and Salt Stress in Transgenic Arabidopsis	Overexpression of an R1R2R3 MYB Gene, OsMYB3R-2, Increases Tolerance to Freezing, Drought, and Salt Stress in Transgenic Arabidopsis
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	transcription factor	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes	Cold treatment greatly induced the expression of OsMYB3R-2, which encodes an active transcription factor
OsMYB3R-2	Os01g0841500	LOC_Os01g62410	salt stress	Overexpression of an R1R2R3 MYB Gene, OsMYB3R-2, Increases Tolerance to Freezing, Drought, and Salt Stress in Transgenic Arabidopsis	Overexpression of an R1R2R3 MYB Gene, OsMYB3R-2, Increases Tolerance to Freezing, Drought, and Salt Stress in Transgenic Arabidopsis
Osmyb4	Os04g0517100	LOC_Os04g43680	disease	Evaluation of transgenic tomato plants ectopically expressing the rice Osmyb4 gene	Like Arabidopsis, tomato plants overexpressing Osmyb4 acquired a higher tolerance to drought stress and to virus disease
Osmyb4	Os04g0517100	LOC_Os04g43680	abiotic stress	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	Real-time PCR analysis revealed that the abiotic stress-related genes, OsVHA-B, OsNHX1, COR413-TM1, and OsMyb4, were up-regulated in overexpressing lines, while these same genes were down-regulated in RNAi lines
Osmyb4	Os04g0517100	LOC_Os04g43680	abiotic stress	The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants	The Osmyb4 rice gene, coding for a transcription factor, proved to be efficient against different abiotic stresses as a trans(cis)gene in several plant species, although the effectiveness was dependent on the host genomic background
Osmyb4	Os04g0517100	LOC_Os04g43680	growth	The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants	These results provide evidence that the cold dependent expression of Osmyb4 can efficiently improved frost tolerance and germination vigour at low temperature without deleterious effect on plant growth
Osmyb4	Os04g0517100	LOC_Os04g43680	chilling	Overexpression of the rice Osmyb4 gene increases chilling and freezing tolerance of Arabidopsis thaliana plants	Overexpression of the rice Osmyb4 gene increases chilling and freezing tolerance of Arabidopsis thaliana plants
Osmyb4	Os04g0517100	LOC_Os04g43680	temperature	The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants	These results provide evidence that the cold dependent expression of Osmyb4 can efficiently improved frost tolerance and germination vigour at low temperature without deleterious effect on plant growth
Osmyb4	Os04g0517100	LOC_Os04g43680	seed	Cloning and expression of five myb-related genes from rice seed	In seed, the mRNA levels of Osmyb1 and Osmyb4 genes reached a maximum at 14 days after flowering (DAF), suggesting that these genes may play a role in seed maturation
Osmyb4	Os04g0517100	LOC_Os04g43680	transcription factor	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development	The R2R3-type OsMyb4 transcription factor of rice has been shown to play a role in the regulation of osmotic adjustment in heterologous overexpression studies
Osmyb4	Os04g0517100	LOC_Os04g43680	transcription factor	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development
Osmyb4	Os04g0517100	LOC_Os04g43680	transcription factor	The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants	The Osmyb4 rice gene, coding for a transcription factor, proved to be efficient against different abiotic stresses as a trans(cis)gene in several plant species, although the effectiveness was dependent on the host genomic background
Osmyb4	Os04g0517100	LOC_Os04g43680	chilling	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development	OsMyb4 network was dissected based on commonalities between the global chilling stress transcriptome and the transcriptome configured by OsMyb4 overexpression
Osmyb4	Os04g0517100	LOC_Os04g43680	flower	Cloning and expression of five myb-related genes from rice seed	In seed, the mRNA levels of Osmyb1 and Osmyb4 genes reached a maximum at 14 days after flowering (DAF), suggesting that these genes may play a role in seed maturation
Osmyb4	Os04g0517100	LOC_Os04g43680	temperature	Response of transgenic rape plants bearing the Osmyb4 gene from rice encoding a trans-factor to low above-zero temperature	Response of transgenic rape plants bearing the Osmyb4 gene from rice encoding a trans-factor to low above-zero temperature
Osmyb4	Os04g0517100	LOC_Os04g43680	transcription factor	The ectopic expression of the rice Osmyb4 gene in Arabidopsis increases tolerance to abiotic, environmental and biotic stresses	The Osmyb4 rice gene encodes a Myb transcription factor involved in cold acclimation
Osmyb4	Os04g0517100	LOC_Os04g43680	cold tolerance	Overexpression of the rice Osmyb4 gene increases chilling and freezing tolerance of Arabidopsis thaliana plants	Finally, in Osmyb4 transgenic plants, the expression of genes participating in different cold-induced pathways is affected, suggesting that Myb4 represents a master switch in cold tolerance
Osmyb4	Os04g0517100	LOC_Os04g43680	drought	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development	OsMyb4 network is independent of drought response element binding protein/C-repeat binding factor (DREB/CBF) and its sub-regulons operate with possible co-regulators including nuclear factor-Y
Osmyb4	Os04g0517100	LOC_Os04g43680	biotic stress	The ectopic expression of the rice Osmyb4 gene in Arabidopsis increases tolerance to abiotic, environmental and biotic stresses	The ectopic expression of the rice Osmyb4 gene in Arabidopsis increases tolerance to abiotic, environmental and biotic stresses
Osmyb4	Os04g0517100	LOC_Os04g43680	panicle	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development
Osmyb4	Os04g0517100	LOC_Os04g43680	drought	Evaluation of transgenic tomato plants ectopically expressing the rice Osmyb4 gene	Like Arabidopsis, tomato plants overexpressing Osmyb4 acquired a higher tolerance to drought stress and to virus disease
Osmyb4	Os04g0517100	LOC_Os04g43680	transcription factor	Evaluation of transgenic tomato plants ectopically expressing the rice Osmyb4 gene	The rice Osmyb4 gene, coding for a MYB transcription factor, is expressed at low levels in rice coleoptiles under normal conditions and strongly induced at 4 °C
Osmyb4	Os04g0517100	LOC_Os04g43680	temperature	Metabolic response to cold and freezing of Osteospermum ecklonis overexpressing Osmyb4	In this study, we explored the potential of Osmyb4 to enhance the cold and freezing tolerance of Osteospermum ecklonis, an ornamental and perennial plant native to South Africa, because of an increasing interest in growing this species in Europe where winter temperatures are low
Osmyb4	Os04g0517100	LOC_Os04g43680	defense	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development	OsMyb4 controls a hierarchical network comprised of several regulatory sub-clusters associated with cellular defense and rescue, metabolism and development
Osmyb4	Os04g0517100	LOC_Os04g43680	biotic stress	Metabolic response to cold and freezing of Osteospermum ecklonis overexpressing Osmyb4	The constitutive expression of the rice Osmyb4 gene in Arabidopsis plants gives rise to enhanced abiotic and biotic stress tolerance, probably by activating several stress-inducible pathways
Osmyb4	Os04g0517100	LOC_Os04g43680	leaf	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Over-expression of Osmyb4 cDNA in rice leaf tissues by agro-infection failed to result in similar over-expression of aminotransferase, ankyrin and WRKY 12 as expected
Osmyb4	Os04g0517100	LOC_Os04g43680	sheath	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.
Osmyb4	Os04g0517100	LOC_Os04g43680	sheath	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Although the role of OsMYB4 in sheath blight resistance was found to be definitive based on our initial results, artificial over-expression of this TF was observed to be insufficient in regulating the disease resistance related genes
Osmyb4	Os04g0517100	LOC_Os04g43680	disease	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.
Osmyb4	Os04g0517100	LOC_Os04g43680	disease	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Among the downstream genes of these promoters, five genes which are known to have a role in disease resistance were selected and the binding capacity of OsMYB4 protein in the promoter regions was analyzed by docking studies
Osmyb4	Os04g0517100	LOC_Os04g43680	disease	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Although the role of OsMYB4 in sheath blight resistance was found to be definitive based on our initial results, artificial over-expression of this TF was observed to be insufficient in regulating the disease resistance related genes
Osmyb4	Os04g0517100	LOC_Os04g43680	disease resistance	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.
Osmyb4	Os04g0517100	LOC_Os04g43680	disease resistance	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Among the downstream genes of these promoters, five genes which are known to have a role in disease resistance were selected and the binding capacity of OsMYB4 protein in the promoter regions was analyzed by docking studies
Osmyb4	Os04g0517100	LOC_Os04g43680	disease resistance	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Although the role of OsMYB4 in sheath blight resistance was found to be definitive based on our initial results, artificial over-expression of this TF was observed to be insufficient in regulating the disease resistance related genes
Osmyb4	Os04g0517100	LOC_Os04g43680	blight	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.
Osmyb4	Os04g0517100	LOC_Os04g43680	blight	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Although the role of OsMYB4 in sheath blight resistance was found to be definitive based on our initial results, artificial over-expression of this TF was observed to be insufficient in regulating the disease resistance related genes
Osmyb4	Os04g0517100	LOC_Os04g43680	resistance	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Among the downstream genes of these promoters, five genes which are known to have a role in disease resistance were selected and the binding capacity of OsMYB4 protein in the promoter regions was analyzed by docking studies
Osmyb4	Os04g0517100	LOC_Os04g43680	resistance	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Although the role of OsMYB4 in sheath blight resistance was found to be definitive based on our initial results, artificial over-expression of this TF was observed to be insufficient in regulating the disease resistance related genes
Osmyb4	Os04g0517100	LOC_Os04g43680	blight disease	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.
OsMYB46	Os12g0515300	LOC_Os12g33070	transcription factor	Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors	It was also found that the rice and maize MYB transcription factors, OsMYB46 and ZmMYB46, are functional orthologs of Arabidopsis MYB46/MYB83 and, when overexpressed in Arabidopsis, they were able to activate the entire secondary wall biosynthetic program
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	 ABA 	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	 ABA 	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Collectively, these results suggested that OsMYB48-1 functions as a novel MYB-related TF which plays a positive role in drought and salinity tolerance by regulating stress-induced ABA synthesis
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	salinity	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Expression of OsMYB48-1 was strongly induced by polyethylene glycol (PEG), abscisic acid (ABA), H2O2, and dehydration, while being slightly induced by high salinity and cold treatment
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	salinity	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Overexpression of OsMYB48-1 in rice significantly improved tolerance to simulated drought and salinity stresses caused by mannitol, PEG, and NaCl, respectively, and drought stress was caused by drying the soil
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	salinity	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Collectively, these results suggested that OsMYB48-1 functions as a novel MYB-related TF which plays a positive role in drought and salinity tolerance by regulating stress-induced ABA synthesis
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	salinity	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	transcription factor	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	drought	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Overexpression of OsMYB48-1 in rice significantly improved tolerance to simulated drought and salinity stresses caused by mannitol, PEG, and NaCl, respectively, and drought stress was caused by drying the soil
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	drought	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	drought	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Collectively, these results suggested that OsMYB48-1 functions as a novel MYB-related TF which plays a positive role in drought and salinity tolerance by regulating stress-induced ABA synthesis
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	drought	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	ethylene	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Expression of OsMYB48-1 was strongly induced by polyethylene glycol (PEG), abscisic acid (ABA), H2O2, and dehydration, while being slightly induced by high salinity and cold treatment
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	salinity stress	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Overexpression of OsMYB48-1 in rice significantly improved tolerance to simulated drought and salinity stresses caused by mannitol, PEG, and NaCl, respectively, and drought stress was caused by drying the soil
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	abiotic stress	Characterization of transcription factor MYB59 and expression profiling in response to low K(+) and NO(3)(-) in indica rice (Oryza sativa L.).	 Quantitative real-time PCR uncovered that the OsMYB59 reacted to abiotic stresses where its expression was increased in BRRI dhan56 but decreased in other varieties on K(+) deficient medium
OsMYB48-1|OsMYB59	Os01g0975300	LOC_Os01g74410	biotic stress	Characterization of transcription factor MYB59 and expression profiling in response to low K(+) and NO(3)(-) in indica rice (Oryza sativa L.).	 Quantitative real-time PCR uncovered that the OsMYB59 reacted to abiotic stresses where its expression was increased in BRRI dhan56 but decreased in other varieties on K(+) deficient medium
OsMYB4P	Os11g0558200	LOC_Os11g35390	transcriptional activator	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice
OsMYB4P	Os11g0558200	LOC_Os11g35390	MYB transcriptional activator	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice
OsMYB4P	Os11g0558200	LOC_Os11g35390	phosphate acquisition	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice
OsMYB4P	Os11g0558200	LOC_Os11g35390	phosphate	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice
OsMYB4P	Os11g0558200	LOC_Os11g35390	nucleus	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	OsMYB4P was localized in the nucleus and acted as a transcriptional activator.
OsMYB4P	Os11g0558200	LOC_Os11g35390	root system architecture	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	In addition, root system architecture was altered considerably as a result of OsMYB4P overexpression.
OsMYB4P	Os11g0558200	LOC_Os11g35390	root	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	In addition, root system architecture was altered considerably as a result of OsMYB4P overexpression.
OsMYB4P	Os11g0558200	LOC_Os11g35390	architecture	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	In addition, root system architecture was altered considerably as a result of OsMYB4P overexpression.
OsMYB4P	Os11g0558200	LOC_Os11g35390	Pi	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	These results demonstrate that OsMYB4P may be associated with efficient utilization of Pi in rice through transcriptional activation of Pi homeostasis-related genes.
OsMYB4P	Os11g0558200	LOC_Os11g35390	Pi homeostasis	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice	These results demonstrate that OsMYB4P may be associated with efficient utilization of Pi in rice through transcriptional activation of Pi homeostasis-related genes.
Osmyb5	Os05g0490600	LOC_Os05g41166	seed	Cloning and expression of five myb-related genes from rice seed	Another myb-like clone, Osmyb5, was obtained by screening a rice seed cDNA library with probes designed to recognize the AACA-like binding domain in GAMYB and PHMYB3
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	seedlings	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.	In the present research, a full-length MYB gene OsMYB511 was identified from rice seedlings through microarray data
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	development	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.	Tissue-specific expression analysis indicated that OsMYB511 was highly expressed in rice panicles at earlier development stage
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	cold stress	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.	Induction of OsMYB511 by cold stress was dramatic in japonica cultivar Jiucaiqing as compared to indica IR26
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	abiotic stress	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	stress	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	stress	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.	Induction of OsMYB511 by cold stress was dramatic in japonica cultivar Jiucaiqing as compared to indica IR26
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	transcription activator	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	transcription activator	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.	The subcellular localization and yeast hybrid assay suggested that OsMYB511 is nucleus-localized transcription activator
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	biotic stress	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.	OsMYB511 encodes a MYB domain transcription activator early regulated by abiotic stress in rice.
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	drought	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Compared with wild-type (WT) plants, transgenic plants over-expressing OsMYBR1 exhibited much greater tolerance to drought stress and decreased sensitivity to abscisic acid (ABA)
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	drought	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Our results provide evidence that OsMYBR1 is involved in mediating plant responses to ABA and drought
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	tolerance	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Compared with wild-type (WT) plants, transgenic plants over-expressing OsMYBR1 exhibited much greater tolerance to drought stress and decreased sensitivity to abscisic acid (ABA)
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	ABA	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Our results provide evidence that OsMYBR1 is involved in mediating plant responses to ABA and drought
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	stress	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Compared with wild-type (WT) plants, transgenic plants over-expressing OsMYBR1 exhibited much greater tolerance to drought stress and decreased sensitivity to abscisic acid (ABA)
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	abscisic acid	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Compared with wild-type (WT) plants, transgenic plants over-expressing OsMYBR1 exhibited much greater tolerance to drought stress and decreased sensitivity to abscisic acid (ABA)
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	ABA	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Our results provide evidence that OsMYBR1 is involved in mediating plant responses to ABA and drought
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	drought stress	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Compared with wild-type (WT) plants, transgenic plants over-expressing OsMYBR1 exhibited much greater tolerance to drought stress and decreased sensitivity to abscisic acid (ABA)
OsMYB511|OsMYBR1	Os04g0583900	LOC_Os04g49450	drought stress	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Compared with wild-type (WT) plants, transgenic plants over-expressing OsMYBR1 exhibited much greater tolerance to drought stress and decreased sensitivity to abscisic acid (ABA)
OsMYB55|OsPL	Os05g0553400	LOC_Os05g48010	temperature	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism	Here, we show that OsMYB55 is induced by high temperature and overexpression of OsMYB55 resulted in improved plant growth under high temperature and decreased the negative effect of high temperature on grain yield
OsMYB55|OsPL	Os05g0553400	LOC_Os05g48010	temperature	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism	OsMYB55 overexpression resulted in an increase in total amino acid content and of the individual amino acids produced by the activation of the above mentioned genes and known for their roles in stress tolerance, namely L-glutamic acid, GABA and arginine especially under high temperature condition
OsMYB55|OsPL	Os05g0553400	LOC_Os05g48010	temperature	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism	In conclusion, overexpression of OsMYB55 improves rice plant tolerance to high temperature, and this high tolerance is associated with enhanced amino acid metabolism through transcription activation
OsMYB55|OsPL	Os05g0553400	LOC_Os05g48010	temperature	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism
OsMYB55|OsPL	Os05g0553400	LOC_Os05g48010	transcription factor	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism
OsMYB55|OsPL	Os05g0553400	LOC_Os05g48010	grain yield	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism	Here, we show that OsMYB55 is induced by high temperature and overexpression of OsMYB55 resulted in improved plant growth under high temperature and decreased the negative effect of high temperature on grain yield
OsMYB55|OsPL	Os05g0553400	LOC_Os05g48010	growth	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism	Here, we show that OsMYB55 is induced by high temperature and overexpression of OsMYB55 resulted in improved plant growth under high temperature and decreased the negative effect of high temperature on grain yield
OsMYB55|OsPL	Os05g0553400	LOC_Os05g48010	grain	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism	Here, we show that OsMYB55 is induced by high temperature and overexpression of OsMYB55 resulted in improved plant growth under high temperature and decreased the negative effect of high temperature on grain yield
OsMYB55|OsPL	Os05g0553400	LOC_Os05g48010	yield	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism	Here, we show that OsMYB55 is induced by high temperature and overexpression of OsMYB55 resulted in improved plant growth under high temperature and decreased the negative effect of high temperature on grain yield
OsMYB57	Os04g0533200	LOC_Os04g45060	Kinase	OsMYB57 transcriptionally regulates OsMAPK11 to interact with OsPAL2;3 and modulate rice allelopathy.	Chromatin immunoprecipitation incorporated with HiSeq demonstrated that OsMYB57 transcriptionally regulated a mitogen-activated protein kinase (OsMAPK11); in addition, OsMAPK11 interacted with OsPAL2;3
OsMYB57	Os04g0533200	LOC_Os04g45060	protein kinase	OsMYB57 transcriptionally regulates OsMAPK11 to interact with OsPAL2;3 and modulate rice allelopathy.	Chromatin immunoprecipitation incorporated with HiSeq demonstrated that OsMYB57 transcriptionally regulated a mitogen-activated protein kinase (OsMAPK11); in addition, OsMAPK11 interacted with OsPAL2;3
OsMYB57	Os04g0533200	LOC_Os04g45060	transcription activator	OsMYB57 transcriptionally regulates OsMAPK11 to interact with OsPAL2;3 and modulate rice allelopathy.	Increasing the OsMYB57 expression in rice using the transcription activator VP64 resulted in increased inhibitory ratios against barnyardgrass
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	root	RRS1 shapes robust root system to enhance drought resistance in rice.	RRS1 shapes robust root system to enhance drought resistance in rice.
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	root	RRS1 shapes robust root system to enhance drought resistance in rice.	 RRS1 knockout plants showed enhanced root growth, including longer root length, longer lateral root length, and larger lateral root density
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	root	RRS1 shapes robust root system to enhance drought resistance in rice.	 RRS1 represses root development by directly activating the expression of OsIAA3 which is involved in the auxin signaling pathway
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	development	RRS1 shapes robust root system to enhance drought resistance in rice.	 RRS1 represses root development by directly activating the expression of OsIAA3 which is involved in the auxin signaling pathway
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	auxin	RRS1 shapes robust root system to enhance drought resistance in rice.	 RRS1 represses root development by directly activating the expression of OsIAA3 which is involved in the auxin signaling pathway
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	resistance	RRS1 shapes robust root system to enhance drought resistance in rice.	RRS1 shapes robust root system to enhance drought resistance in rice.
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	resistance	RRS1 shapes robust root system to enhance drought resistance in rice.	 Knockout of RRS1 enhances drought resistance by promoting water absorption and improving water use efficiency
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	drought	RRS1 shapes robust root system to enhance drought resistance in rice.	RRS1 shapes robust root system to enhance drought resistance in rice.
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	drought	RRS1 shapes robust root system to enhance drought resistance in rice.	 Knockout of RRS1 enhances drought resistance by promoting water absorption and improving water use efficiency
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	root development	RRS1 shapes robust root system to enhance drought resistance in rice.	 RRS1 represses root development by directly activating the expression of OsIAA3 which is involved in the auxin signaling pathway
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	root growth	RRS1 shapes robust root system to enhance drought resistance in rice.	 RRS1 knockout plants showed enhanced root growth, including longer root length, longer lateral root length, and larger lateral root density
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	lateral root	RRS1 shapes robust root system to enhance drought resistance in rice.	 RRS1 knockout plants showed enhanced root growth, including longer root length, longer lateral root length, and larger lateral root density
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	drought resistance	RRS1 shapes robust root system to enhance drought resistance in rice.	RRS1 shapes robust root system to enhance drought resistance in rice.
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	drought resistance	RRS1 shapes robust root system to enhance drought resistance in rice.	 Knockout of RRS1 enhances drought resistance by promoting water absorption and improving water use efficiency
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	root length	RRS1 shapes robust root system to enhance drought resistance in rice.	 RRS1 knockout plants showed enhanced root growth, including longer root length, longer lateral root length, and larger lateral root density
OsMYB58|OsMYB63|RRS1	Os04g0594100	LOC_Os04g50770	lateral root length	RRS1 shapes robust root system to enhance drought resistance in rice.	 RRS1 knockout plants showed enhanced root growth, including longer root length, longer lateral root length, and larger lateral root density
OsMYB6	Os04g0676700	LOC_Os04g58020	transcription factor	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	These results indicate that OsMYB6 gene functions as a stress-responsive transcription factor which plays a positive regulatory role in response to drought and salt stress resistance, and may be used as a candidate gene for molecular breeding of salt-tolerant and drought-tolerant crop varieties
OsMYB6	Os04g0676700	LOC_Os04g58020	growth	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Overexpression of OsMYB6 in rice did not suggest a negative effect on the growth and development of transgenic plants, but OsMYB6-overexpressing plants showed increased tolerance to drought and salt stress compared with wild-type plants, as are evaluated by higher proline content, higher CAT and SOD activities, lower REL and MDA content in transgenic plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	development	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Overexpression of OsMYB6 in rice did not suggest a negative effect on the growth and development of transgenic plants, but OsMYB6-overexpressing plants showed increased tolerance to drought and salt stress compared with wild-type plants, as are evaluated by higher proline content, higher CAT and SOD activities, lower REL and MDA content in transgenic plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	drought	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In the present study, we cloned and characterized the OsMYB6 gene, which was induced by drought and salinity stress
OsMYB6	Os04g0676700	LOC_Os04g58020	drought	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Overexpression of OsMYB6 in rice did not suggest a negative effect on the growth and development of transgenic plants, but OsMYB6-overexpressing plants showed increased tolerance to drought and salt stress compared with wild-type plants, as are evaluated by higher proline content, higher CAT and SOD activities, lower REL and MDA content in transgenic plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	drought	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In addition, the expression of abiotic stress-responsive genes were significantly higher in OsMYB6 transgenic plants than that in wild-type plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	drought	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	These results indicate that OsMYB6 gene functions as a stress-responsive transcription factor which plays a positive regulatory role in response to drought and salt stress resistance, and may be used as a candidate gene for molecular breeding of salt-tolerant and drought-tolerant crop varieties
OsMYB6	Os04g0676700	LOC_Os04g58020	salinity	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In the present study, we cloned and characterized the OsMYB6 gene, which was induced by drought and salinity stress
OsMYB6	Os04g0676700	LOC_Os04g58020	salt	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Overexpression of OsMYB6 in rice did not suggest a negative effect on the growth and development of transgenic plants, but OsMYB6-overexpressing plants showed increased tolerance to drought and salt stress compared with wild-type plants, as are evaluated by higher proline content, higher CAT and SOD activities, lower REL and MDA content in transgenic plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	salt	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In addition, the expression of abiotic stress-responsive genes were significantly higher in OsMYB6 transgenic plants than that in wild-type plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	salt	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	These results indicate that OsMYB6 gene functions as a stress-responsive transcription factor which plays a positive regulatory role in response to drought and salt stress resistance, and may be used as a candidate gene for molecular breeding of salt-tolerant and drought-tolerant crop varieties
OsMYB6	Os04g0676700	LOC_Os04g58020	tolerance	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Overexpression of OsMYB6 in rice did not suggest a negative effect on the growth and development of transgenic plants, but OsMYB6-overexpressing plants showed increased tolerance to drought and salt stress compared with wild-type plants, as are evaluated by higher proline content, higher CAT and SOD activities, lower REL and MDA content in transgenic plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	abiotic stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In addition, the expression of abiotic stress-responsive genes were significantly higher in OsMYB6 transgenic plants than that in wild-type plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	salt stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Overexpression of OsMYB6 in rice did not suggest a negative effect on the growth and development of transgenic plants, but OsMYB6-overexpressing plants showed increased tolerance to drought and salt stress compared with wild-type plants, as are evaluated by higher proline content, higher CAT and SOD activities, lower REL and MDA content in transgenic plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	salt stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In addition, the expression of abiotic stress-responsive genes were significantly higher in OsMYB6 transgenic plants than that in wild-type plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	salt stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	These results indicate that OsMYB6 gene functions as a stress-responsive transcription factor which plays a positive regulatory role in response to drought and salt stress resistance, and may be used as a candidate gene for molecular breeding of salt-tolerant and drought-tolerant crop varieties
OsMYB6	Os04g0676700	LOC_Os04g58020	stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In the present study, we cloned and characterized the OsMYB6 gene, which was induced by drought and salinity stress
OsMYB6	Os04g0676700	LOC_Os04g58020	stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Overexpression of OsMYB6 in rice did not suggest a negative effect on the growth and development of transgenic plants, but OsMYB6-overexpressing plants showed increased tolerance to drought and salt stress compared with wild-type plants, as are evaluated by higher proline content, higher CAT and SOD activities, lower REL and MDA content in transgenic plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In addition, the expression of abiotic stress-responsive genes were significantly higher in OsMYB6 transgenic plants than that in wild-type plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	These results indicate that OsMYB6 gene functions as a stress-responsive transcription factor which plays a positive regulatory role in response to drought and salt stress resistance, and may be used as a candidate gene for molecular breeding of salt-tolerant and drought-tolerant crop varieties
OsMYB6	Os04g0676700	LOC_Os04g58020	breeding	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	These results indicate that OsMYB6 gene functions as a stress-responsive transcription factor which plays a positive regulatory role in response to drought and salt stress resistance, and may be used as a candidate gene for molecular breeding of salt-tolerant and drought-tolerant crop varieties
OsMYB6	Os04g0676700	LOC_Os04g58020	nucleus	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Subcellular localization of OsMYB6-YFP fusion protein in protoplast cells indicated that OsMYB6 was localized in the nucleus
OsMYB6	Os04g0676700	LOC_Os04g58020	biotic stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In addition, the expression of abiotic stress-responsive genes were significantly higher in OsMYB6 transgenic plants than that in wild-type plants under drought and salt stress conditions
OsMYB6	Os04g0676700	LOC_Os04g58020	salinity stress	Overexpression of a MYB Family Gene, OsMYB6, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	In the present study, we cloned and characterized the OsMYB6 gene, which was induced by drought and salinity stress
OsMYB60	Os12g0125000	LOC_Os12g03150	leaf	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	 Downregulation of TL by RNA interference (RNAi) and overexpression of OsMYB60 resulted in twisted leaf blades in transgenic rice
OsMYB60	Os12g0125000	LOC_Os12g03150	leaf	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	 This suggests that TL may play a cis-regulatory role on OsMYB60 in leaf morphological development
OsMYB60	Os12g0125000	LOC_Os12g03150	leaf	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	 We further discovered that a C2H2 transcription factor, OsZFP7, is an OsMYB60 binding partner and involved in leaf development
OsMYB60	Os12g0125000	LOC_Os12g03150	transcription factor	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	 We further discovered that a C2H2 transcription factor, OsZFP7, is an OsMYB60 binding partner and involved in leaf development
OsMYB60	Os12g0125000	LOC_Os12g03150	leaf development	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	 We further discovered that a C2H2 transcription factor, OsZFP7, is an OsMYB60 binding partner and involved in leaf development
OsMYB60	Os12g0125000	LOC_Os12g03150	development	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	 This suggests that TL may play a cis-regulatory role on OsMYB60 in leaf morphological development
OsMYB60	Os12g0125000	LOC_Os12g03150	development	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	 We further discovered that a C2H2 transcription factor, OsZFP7, is an OsMYB60 binding partner and involved in leaf development
OsMYB60	Os12g0125000	LOC_Os12g03150	leaf	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Quantitative reverse-transcription PCR showed that the loss-of-function of OsMYB60 led to downregulation of wax biosynthetic genes, leading to reduced amounts of total wax components on leaf surfaces under normal conditions
OsMYB60	Os12g0125000	LOC_Os12g03150	leaf	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Taken together, these results demonstrate that OsMYB60 contributes to enhancing rice resilience to drought stress by promoting cuticular wax biosynthesis on leaf surfaces
OsMYB60	Os12g0125000	LOC_Os12g03150	transcription factor	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Here, we show that the MYB transcription factor OsMYB60 positively regulates cuticular wax biosynthesis and this helps rice (Oryza sativa) plants tolerate drought stress
OsMYB60	Os12g0125000	LOC_Os12g03150	drought	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.
OsMYB60	Os12g0125000	LOC_Os12g03150	drought	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Here, we show that the MYB transcription factor OsMYB60 positively regulates cuticular wax biosynthesis and this helps rice (Oryza sativa) plants tolerate drought stress
OsMYB60	Os12g0125000	LOC_Os12g03150	drought	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Compared with the wild type (japonica cultivar &#x27;Dongjin&#x27;), osmyb60 null mutants (osmyb60-1 and osmyb60-2) exhibited increased drought sensitivity, with higher chlorophyll leaching and faster rates of water loss
OsMYB60	Os12g0125000	LOC_Os12g03150	drought	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Taken together, these results demonstrate that OsMYB60 contributes to enhancing rice resilience to drought stress by promoting cuticular wax biosynthesis on leaf surfaces
OsMYB60	Os12g0125000	LOC_Os12g03150	stress	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.
OsMYB60	Os12g0125000	LOC_Os12g03150	stress	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Here, we show that the MYB transcription factor OsMYB60 positively regulates cuticular wax biosynthesis and this helps rice (Oryza sativa) plants tolerate drought stress
OsMYB60	Os12g0125000	LOC_Os12g03150	stress	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Taken together, these results demonstrate that OsMYB60 contributes to enhancing rice resilience to drought stress by promoting cuticular wax biosynthesis on leaf surfaces
OsMYB60	Os12g0125000	LOC_Os12g03150	chlorophyll	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Compared with the wild type (japonica cultivar &#x27;Dongjin&#x27;), osmyb60 null mutants (osmyb60-1 and osmyb60-2) exhibited increased drought sensitivity, with higher chlorophyll leaching and faster rates of water loss
OsMYB60	Os12g0125000	LOC_Os12g03150	drought stress	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.
OsMYB60	Os12g0125000	LOC_Os12g03150	drought stress	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Here, we show that the MYB transcription factor OsMYB60 positively regulates cuticular wax biosynthesis and this helps rice (Oryza sativa) plants tolerate drought stress
OsMYB60	Os12g0125000	LOC_Os12g03150	drought stress	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Taken together, these results demonstrate that OsMYB60 contributes to enhancing rice resilience to drought stress by promoting cuticular wax biosynthesis on leaf surfaces
OsMYB60	Os12g0125000	LOC_Os12g03150	drought sensitivity	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Compared with the wild type (japonica cultivar &#x27;Dongjin&#x27;), osmyb60 null mutants (osmyb60-1 and osmyb60-2) exhibited increased drought sensitivity, with higher chlorophyll leaching and faster rates of water loss
OsMYB60	Os12g0125000	LOC_Os12g03150	water loss	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Compared with the wild type (japonica cultivar &#x27;Dongjin&#x27;), osmyb60 null mutants (osmyb60-1 and osmyb60-2) exhibited increased drought sensitivity, with higher chlorophyll leaching and faster rates of water loss
OsMYB60	Os12g0125000	LOC_Os12g03150	drought stress 	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.
OsMYB60	Os12g0125000	LOC_Os12g03150	drought stress 	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Taken together, these results demonstrate that OsMYB60 contributes to enhancing rice resilience to drought stress by promoting cuticular wax biosynthesis on leaf surfaces
OsMYB60	Os12g0125000	LOC_Os12g03150	cuticular wax biosynthesis	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.
OsMYB60	Os12g0125000	LOC_Os12g03150	cuticular wax biosynthesis	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Here, we show that the MYB transcription factor OsMYB60 positively regulates cuticular wax biosynthesis and this helps rice (Oryza sativa) plants tolerate drought stress
OsMYB60	Os12g0125000	LOC_Os12g03150	cuticular wax biosynthesis	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Taken together, these results demonstrate that OsMYB60 contributes to enhancing rice resilience to drought stress by promoting cuticular wax biosynthesis on leaf surfaces
OsMYB60	Os12g0125000	LOC_Os12g03150	wax biosynthesis	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.
OsMYB60	Os12g0125000	LOC_Os12g03150	wax biosynthesis	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Here, we show that the MYB transcription factor OsMYB60 positively regulates cuticular wax biosynthesis and this helps rice (Oryza sativa) plants tolerate drought stress
OsMYB60	Os12g0125000	LOC_Os12g03150	wax biosynthesis	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	 Taken together, these results demonstrate that OsMYB60 contributes to enhancing rice resilience to drought stress by promoting cuticular wax biosynthesis on leaf surfaces
OsMYB7	Os07g0558100	LOC_Os07g37210	leaf	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.
OsMYB7	Os07g0558100	LOC_Os07g37210	leaf	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	) R2R3-type MYB transcription factor OsMYB7 determines leaf angle in a developmental stage-specific manner
OsMYB7	Os07g0558100	LOC_Os07g37210	leaf	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 These results suggest that OsMYB7 promotes leaf inclination partially through decreasing free auxin levels and promoting cell elongation at the adaxial side of lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	transcription factor	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	) R2R3-type MYB transcription factor OsMYB7 determines leaf angle in a developmental stage-specific manner
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 In agreement with these observations, OsMYB7 was preferentially expressed in the lamina joints of post-mature leaves
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Although OsMYB7 repressed lignin biosynthesis, it enhanced thickening of sclerenchyma cell walls by elevating cellulose contents at the lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Furthermore, we found that OsMYB7 affects endogenous auxin levels in lamina joints, and the adaxial cells of lamina joints in OsMYB7-overexpressing lines and osmyb7 knockout mutants exhibited enhanced and reduced elongation, respectively, compared to the wild type
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 These results suggest that OsMYB7 promotes leaf inclination partially through decreasing free auxin levels and promoting cell elongation at the adaxial side of lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	auxin	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Furthermore, we found that OsMYB7 affects endogenous auxin levels in lamina joints, and the adaxial cells of lamina joints in OsMYB7-overexpressing lines and osmyb7 knockout mutants exhibited enhanced and reduced elongation, respectively, compared to the wild type
OsMYB7	Os07g0558100	LOC_Os07g37210	auxin	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 These results suggest that OsMYB7 promotes leaf inclination partially through decreasing free auxin levels and promoting cell elongation at the adaxial side of lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	mature leaves	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 In agreement with these observations, OsMYB7 was preferentially expressed in the lamina joints of post-mature leaves
OsMYB7	Os07g0558100	LOC_Os07g37210	cellulose	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Although OsMYB7 repressed lignin biosynthesis, it enhanced thickening of sclerenchyma cell walls by elevating cellulose contents at the lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	cell wall	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Since OsMYB7 homologs are transcriptional repressors of lignin biosynthesis, we examined whether OsMYB7 might inhibit thickening of secondary cell walls
OsMYB7	Os07g0558100	LOC_Os07g37210	cell wall	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Although OsMYB7 repressed lignin biosynthesis, it enhanced thickening of sclerenchyma cell walls by elevating cellulose contents at the lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	cell elongation	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 These results suggest that OsMYB7 promotes leaf inclination partially through decreasing free auxin levels and promoting cell elongation at the adaxial side of lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	erect	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 OsMYB7-overexpressing lines produced wide-angled leaves and osmyb7 knockout mutants exhibited erect leaves
OsMYB7	Os07g0558100	LOC_Os07g37210	lignin	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Since OsMYB7 homologs are transcriptional repressors of lignin biosynthesis, we examined whether OsMYB7 might inhibit thickening of secondary cell walls
OsMYB7	Os07g0558100	LOC_Os07g37210	lignin	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Although OsMYB7 repressed lignin biosynthesis, it enhanced thickening of sclerenchyma cell walls by elevating cellulose contents at the lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	lignin biosynthesis	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Since OsMYB7 homologs are transcriptional repressors of lignin biosynthesis, we examined whether OsMYB7 might inhibit thickening of secondary cell walls
OsMYB7	Os07g0558100	LOC_Os07g37210	lignin biosynthesis	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Although OsMYB7 repressed lignin biosynthesis, it enhanced thickening of sclerenchyma cell walls by elevating cellulose contents at the lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	leaf angle	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.
OsMYB7	Os07g0558100	LOC_Os07g37210	leaf angle	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	) R2R3-type MYB transcription factor OsMYB7 determines leaf angle in a developmental stage-specific manner
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina joint	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina joint	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 In agreement with these observations, OsMYB7 was preferentially expressed in the lamina joints of post-mature leaves
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina joint	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Although OsMYB7 repressed lignin biosynthesis, it enhanced thickening of sclerenchyma cell walls by elevating cellulose contents at the lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina joint	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Furthermore, we found that OsMYB7 affects endogenous auxin levels in lamina joints, and the adaxial cells of lamina joints in OsMYB7-overexpressing lines and osmyb7 knockout mutants exhibited enhanced and reduced elongation, respectively, compared to the wild type
OsMYB7	Os07g0558100	LOC_Os07g37210	lamina joint	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 These results suggest that OsMYB7 promotes leaf inclination partially through decreasing free auxin levels and promoting cell elongation at the adaxial side of lamina joints
OsMYB7	Os07g0558100	LOC_Os07g37210	transcriptional repressor	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Since OsMYB7 homologs are transcriptional repressors of lignin biosynthesis, we examined whether OsMYB7 might inhibit thickening of secondary cell walls
OsMYB7	Os07g0558100	LOC_Os07g37210	secondary cell wall	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	 Since OsMYB7 homologs are transcriptional repressors of lignin biosynthesis, we examined whether OsMYB7 might inhibit thickening of secondary cell walls
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	pollen	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	anther	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	anther	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	To understand how OsMYB80 regulates anther development, RNA-seq analysis was conducted to identify genes differentially regulated by OsMYB80 in rice anthers
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	development	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	cell death	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	The osmyb80 mutants exhibited premature tapetum cell death, lack of Ubisch bodies, no exine, and microspore degeneration
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	sterile	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	Here we isolated two allelic male sterile mutants of OsMYB80 and investigated how OsMYB80 regulates male fertility in rice
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	fertility	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	fertility	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	Here we isolated two allelic male sterile mutants of OsMYB80 and investigated how OsMYB80 regulates male fertility in rice
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	fertility	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	Functional annotation of the 188 genes suggested that OsMYB80 regulates male fertility by directly targeting multiple biological processes
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	tapetum	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	The osmyb80 mutants exhibited premature tapetum cell death, lack of Ubisch bodies, no exine, and microspore degeneration
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	microspore	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	The osmyb80 mutants exhibited premature tapetum cell death, lack of Ubisch bodies, no exine, and microspore degeneration
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	anther development	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	anther development	OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways.	To understand how OsMYB80 regulates anther development, RNA-seq analysis was conducted to identify genes differentially regulated by OsMYB80 in rice anthers
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	development	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	Moreover, BM1 affects the expression of several known genes related to tapetum and microspore development
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	fertility	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	Collectively, our results suggest that BM1 is one of key regulators for rice male fertility and may serve as a potential target for rice male-sterile line breeding and hybrid seed production
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	pollen	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	The bm1 mutant exhibited slightly lagging meiosis, aborted transition of the tapetum to a secretory type, premature tapetal degeneration, and abnormal pollen exine formation, leading to ultimately lacks of visible pollens in the mature white anthers
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	seed	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	Collectively, our results suggest that BM1 is one of key regulators for rice male fertility and may serve as a potential target for rice male-sterile line breeding and hybrid seed production
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	map-based cloning	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	Map-based cloning, complementation and targeted mutagenesis using CRISPR/Cas9 technology demonstrated that the mutated LOC_Os04g39470 is the causal gene in bm1
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	breeding	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	Collectively, our results suggest that BM1 is one of key regulators for rice male fertility and may serve as a potential target for rice male-sterile line breeding and hybrid seed production
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	tapetum	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	The bm1 mutant exhibited slightly lagging meiosis, aborted transition of the tapetum to a secretory type, premature tapetal degeneration, and abnormal pollen exine formation, leading to ultimately lacks of visible pollens in the mature white anthers
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	tapetum	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	Moreover, BM1 affects the expression of several known genes related to tapetum and microspore development
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	tapetal	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	The bm1 mutant exhibited slightly lagging meiosis, aborted transition of the tapetum to a secretory type, premature tapetal degeneration, and abnormal pollen exine formation, leading to ultimately lacks of visible pollens in the mature white anthers
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	microspore	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	Moreover, BM1 affects the expression of several known genes related to tapetum and microspore development
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	pollen exine formation	The MYB transcription factor Baymax1 plays a critical role in rice male fertility	The bm1 mutant exhibited slightly lagging meiosis, aborted transition of the tapetum to a secretory type, premature tapetal degeneration, and abnormal pollen exine formation, leading to ultimately lacks of visible pollens in the mature white anthers
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	transcription factor	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	Results: In this study, we obtained several lines in which the MYB transcription factor OsMS188 was knocked out through the CRISPR-Cas9 approach
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	development	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	development	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	The osms188 lines exhibited a male-sterile phenotype with aberrant development and degeneration of tapetal cells, absence of the sexine layer and defective anther cuticles
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	development	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	Conclusion: Overall, OsMS188 is a key regulator of tapetum development and pollen wall formation
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	pollen	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	Conclusion: Overall, OsMS188 is a key regulator of tapetum development and pollen wall formation
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	anther	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	The osms188 lines exhibited a male-sterile phenotype with aberrant development and degeneration of tapetal cells, absence of the sexine layer and defective anther cuticles
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	tapetum	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	tapetum	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	Conclusion: Overall, OsMS188 is a key regulator of tapetum development and pollen wall formation
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	tapetal	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	The osms188 lines exhibited a male-sterile phenotype with aberrant development and degeneration of tapetal cells, absence of the sexine layer and defective anther cuticles
OsMYB80|BM1|OsMS188	Os04g0470600	LOC_Os04g39470	pollen wall	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	Conclusion: Overall, OsMS188 is a key regulator of tapetum development and pollen wall formation
OsMYB91	Os12g0572000	LOC_Os12g38400	growth	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.
OsMYB91	Os12g0572000	LOC_Os12g38400	growth	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	Plants over-expressing OsMYB91 showed reduced plant growth and accumulation of endogenous ABA under control conditions
OsMYB91	Os12g0572000	LOC_Os12g38400	growth	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	These results suggested that OsMYB91 was a stress-responsive gene that might be involved in coordinating rice tolerance to abiotic stress and plant growth by regulating SLR1 expression
OsMYB91	Os12g0572000	LOC_Os12g38400	salt	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.
OsMYB91	Os12g0572000	LOC_Os12g38400	salt	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	OsMYB91 was induced by abiotic stress, especially by salt stress
OsMYB91	Os12g0572000	LOC_Os12g38400	tolerance	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.
OsMYB91	Os12g0572000	LOC_Os12g38400	tolerance	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	These results suggested that OsMYB91 was a stress-responsive gene that might be involved in coordinating rice tolerance to abiotic stress and plant growth by regulating SLR1 expression
OsMYB91	Os12g0572000	LOC_Os12g38400	abiotic stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	OsMYB91 was induced by abiotic stress, especially by salt stress
OsMYB91	Os12g0572000	LOC_Os12g38400	abiotic stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	In addition, expression of OsMYB91 was also induced by other abiotic stresses and hormone treatment
OsMYB91	Os12g0572000	LOC_Os12g38400	abiotic stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	These results suggested that OsMYB91 was a stress-responsive gene that might be involved in coordinating rice tolerance to abiotic stress and plant growth by regulating SLR1 expression
OsMYB91	Os12g0572000	LOC_Os12g38400	ABA	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	Plants over-expressing OsMYB91 showed reduced plant growth and accumulation of endogenous ABA under control conditions
OsMYB91	Os12g0572000	LOC_Os12g38400	salt stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.
OsMYB91	Os12g0572000	LOC_Os12g38400	salt stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	OsMYB91 was induced by abiotic stress, especially by salt stress
OsMYB91	Os12g0572000	LOC_Os12g38400	stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.
OsMYB91	Os12g0572000	LOC_Os12g38400	stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	OsMYB91 was induced by abiotic stress, especially by salt stress
OsMYB91	Os12g0572000	LOC_Os12g38400	stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	These results suggested that OsMYB91 was a stress-responsive gene that might be involved in coordinating rice tolerance to abiotic stress and plant growth by regulating SLR1 expression
OsMYB91	Os12g0572000	LOC_Os12g38400	biotic stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	OsMYB91 was induced by abiotic stress, especially by salt stress
OsMYB91	Os12g0572000	LOC_Os12g38400	biotic stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	In addition, expression of OsMYB91 was also induced by other abiotic stresses and hormone treatment
OsMYB91	Os12g0572000	LOC_Os12g38400	biotic stress	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	These results suggested that OsMYB91 was a stress-responsive gene that might be involved in coordinating rice tolerance to abiotic stress and plant growth by regulating SLR1 expression
OsMYB91	Os12g0572000	LOC_Os12g38400	ABA	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	Plants over-expressing OsMYB91 showed reduced plant growth and accumulation of endogenous ABA under control conditions
OsMYB91	Os12g0572000	LOC_Os12g38400	stress tolerance	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.
OsMYB91	Os12g0572000	LOC_Os12g38400	plant growth	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.
OsMYB91	Os12g0572000	LOC_Os12g38400	plant growth	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	Plants over-expressing OsMYB91 showed reduced plant growth and accumulation of endogenous ABA under control conditions
OsMYB91	Os12g0572000	LOC_Os12g38400	plant growth	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	These results suggested that OsMYB91 was a stress-responsive gene that might be involved in coordinating rice tolerance to abiotic stress and plant growth by regulating SLR1 expression
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	ga	A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells	Mutation of the two W boxes prevents the binding of OsWRKY71 to the mutated promoter, and releases the suppression of the OsGAMYB-activated Amy32b expression by OsWRKY71, suggesting that OsWRKY71 blocks GA signaling by functionally interfering with OsGAMYB
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	anther	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	High-level OsGAMYB expression was detected in the aleurone cells, inflorescence shoot apical region, stamen primordia, and tapetum cells of the anther, but only low-level expression occurred in organs at the vegetative stage or in the elongating stem
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	ga	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	No alpha-amylase expression in the endosperm was induced in these mutants in response to GA treatment, indicating that the Tos17 insertion had knocked out OsGAMYB function
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	tapetum	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	High-level OsGAMYB expression was detected in the aleurone cells, inflorescence shoot apical region, stamen primordia, and tapetum cells of the anther, but only low-level expression occurred in organs at the vegetative stage or in the elongating stem
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	inflorescence	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	High-level OsGAMYB expression was detected in the aleurone cells, inflorescence shoot apical region, stamen primordia, and tapetum cells of the anther, but only low-level expression occurred in organs at the vegetative stage or in the elongating stem
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	stem	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	High-level OsGAMYB expression was detected in the aleurone cells, inflorescence shoot apical region, stamen primordia, and tapetum cells of the anther, but only low-level expression occurred in organs at the vegetative stage or in the elongating stem
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	transcription factor	Two cis-acting elements necessary and sufficient for gibberellin-upregulated proteinase expression in rice seeds	The sequences were also required for effective transactivation by the transcription factor OsGAMyb
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	endosperm	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	No alpha-amylase expression in the endosperm was induced in these mutants in response to GA treatment, indicating that the Tos17 insertion had knocked out OsGAMYB function
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	pollen	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	These results demonstrate that, in addition to its role in the induction of alpha-amylase in aleurone, OsGAMYB also is important for floral organ development and essential for pollen development
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	flower	GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers	Thus, OsGAMYB and OsGAMYB-like genes are regulated by miR159 in flowers
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	shoot	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	High-level OsGAMYB expression was detected in the aleurone cells, inflorescence shoot apical region, stamen primordia, and tapetum cells of the anther, but only low-level expression occurred in organs at the vegetative stage or in the elongating stem
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	vegetative	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	High-level OsGAMYB expression was detected in the aleurone cells, inflorescence shoot apical region, stamen primordia, and tapetum cells of the anther, but only low-level expression occurred in organs at the vegetative stage or in the elongating stem
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	stamen	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	High-level OsGAMYB expression was detected in the aleurone cells, inflorescence shoot apical region, stamen primordia, and tapetum cells of the anther, but only low-level expression occurred in organs at the vegetative stage or in the elongating stem
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	ga	Two cis-acting elements necessary and sufficient for gibberellin-upregulated proteinase expression in rice seeds	Four copies of either GARE or CARE showed transactivation neither by OsGAMyb nor by GA induction
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	floral	Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development	These results demonstrate that, in addition to its role in the induction of alpha-amylase in aleurone, OsGAMYB also is important for floral organ development and essential for pollen development
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	transcription factor	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> Further analysis showed that transcription factor of OsGAMYB was an activator of OsTPP1, and expression of OsGAMYB was decreased by both the exogenous and endogenous ABA, subsequently reduced the expression of OsTPP1, which suggested a new signaling pathway required for seed germination in rice
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	seed	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> Further analysis showed that transcription factor of OsGAMYB was an activator of OsTPP1, and expression of OsGAMYB was decreased by both the exogenous and endogenous ABA, subsequently reduced the expression of OsTPP1, which suggested a new signaling pathway required for seed germination in rice
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	seed germination	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> Further analysis showed that transcription factor of OsGAMYB was an activator of OsTPP1, and expression of OsGAMYB was decreased by both the exogenous and endogenous ABA, subsequently reduced the expression of OsTPP1, which suggested a new signaling pathway required for seed germination in rice
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	tillering	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	tillering	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	These data suggest that miR319 regulates rice tiller bud development and tillering through targeting OsTCP21 and OsGAmyb
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	development	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	These data suggest that miR319 regulates rice tiller bud development and tillering through targeting OsTCP21 and OsGAmyb
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	grain	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	grain	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	tiller	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Moreover, OsTCP21 and OsGAmyb overexpression lines and STTM319 had increased tiller bud length and biomass, whereas both were decreased in OsTCP21 and OsGAmyb knockout lines and OE319a
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	tiller	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	These data suggest that miR319 regulates rice tiller bud development and tillering through targeting OsTCP21 and OsGAmyb
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	tiller	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	grain yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	grain yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	tiller number	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsMYBGA|OsGAMYB	Os01g0812000	LOC_Os01g59660	transcription factor	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	Using transient dual-luciferase and yeast one-hybrid assays, IPA1 was found to directly activate the expression of OsWRKY51 and OsWRKY71, which would interfere with the binding affinity of GA-induced transcription factor OsGAMYB to inhibit the expression of amylase genes
OsMYBS1	Os01g0524500	LOC_Os01g34060	seed	Three Novel MYB Proteins with One DNA Binding Repeat Mediate Sugar and Hormone Regulation of alpha-Amylase Gene Expression	Transient expression assays with barley half-seeds showed that OsMYBS1 and OsMYBS2 transactivate a promoter containing the TATCCA element when sugar is provided, whereas OsMYBS3 represses transcription of the same promoter under sugar starvation
OsMYBS1	Os01g0524500	LOC_Os01g34060	seed	Three Novel MYB Proteins with One DNA Binding Repeat Mediate Sugar and Hormone Regulation of alpha-Amylase Gene Expression	Two-hybrid experiments with barley half-seeds showed that OsMYBS1 is able to form a homodimer
OsMYBS2	Os10g0562100	LOC_Os10g41260	seed	Three Novel MYB Proteins with One DNA Binding Repeat Mediate Sugar and Hormone Regulation of alpha-Amylase Gene Expression	Transient expression assays with barley half-seeds showed that OsMYBS1 and OsMYBS2 transactivate a promoter containing the TATCCA element when sugar is provided, whereas OsMYBS3 represses transcription of the same promoter under sugar starvation
OsMYBS2	Os10g0562100	LOC_Os10g41260	cytoplasm	The coordination of OsbZIP72 and OsMYBS2 with reverse roles regulates the transcription of OsPsbS1 in rice	GF14A protein affects the repression activity of OsMYBS2 by regulating its nucleocytoplasmic shuttling, and Ser53 is necessary for OsMYBS2 to be retained in the cytoplasm
OsMYBS2	Os10g0562100	LOC_Os10g41260	transcription factor	Knockdown expression of a MYB-related transcription factor gene, OsMYBS2, enhances production of recombinant proteins in rice suspension cells.	The OsMYBS2 transcription factor was shown recently to reduce activation of the αAmy3 promoter by competing for the binding site of the TA box of the αAmy3 promoter with the potent OsMYBS1 activator
OsMYBS2	Os10g0562100	LOC_Os10g41260	transcription factor	Knockdown expression of a MYB-related transcription factor gene, OsMYBS2, enhances production of recombinant proteins in rice suspension cells.	CONCLUSIONS: Our results demonstrate that knockdown of the transcription factor gene OsMYBS2 increased the activity of the αAmy3 promoter and improved the yield of recombinant proteins secreted in rice cell suspension cultures
OsMYBS2	Os10g0562100	LOC_Os10g41260	yield	Knockdown expression of a MYB-related transcription factor gene, OsMYBS2, enhances production of recombinant proteins in rice suspension cells.	CONCLUSIONS: Our results demonstrate that knockdown of the transcription factor gene OsMYBS2 increased the activity of the αAmy3 promoter and improved the yield of recombinant proteins secreted in rice cell suspension cultures
OsMYC2	Os10g0575000	LOC_Os10g42430	transcription factor	Jasmonic acid regulates spikelet development in rice	OsJAZ1 also interacts with OsMYC2, a transcription factor in the JA signalling pathway, and represses OsMYC2's role in activating OsMADS1, an E-class gene crucial to the spikelet development.
OsMYC2	Os10g0575000	LOC_Os10g42430	JA signalling	Jasmonic acid regulates spikelet development in rice	OsJAZ1 also interacts with OsMYC2, a transcription factor in the JA signalling pathway, and represses OsMYC2's role in activating OsMADS1, an E-class gene crucial to the spikelet development.
OsMYC2	Os10g0575000	LOC_Os10g42430	resistance	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.
OsMYC2	Os10g0575000	LOC_Os10g42430	resistance	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Overall, we conclude that OsMYC2 acts as a positive regulator of early JA signals in the JA-induced resistance against Xoo in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	xoo	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Overall, we conclude that OsMYC2 acts as a positive regulator of early JA signals in the JA-induced resistance against Xoo in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	ja	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	The up-regulation of OsMYC2 in response to JA was regulated by OsJAZ8
OsMYC2	Os10g0575000	LOC_Os10g42430	ja	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Overall, we conclude that OsMYC2 acts as a positive regulator of early JA signals in the JA-induced resistance against Xoo in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	blight	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.
OsMYC2	Os10g0575000	LOC_Os10g42430	resistant	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Transgenic rice plants overexpressing OsMYC2 exhibited a JA-hypersensitive phenotype and were more resistant to Xoo
OsMYC2	Os10g0575000	LOC_Os10g42430	JA	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	The up-regulation of OsMYC2 in response to JA was regulated by OsJAZ8
OsMYC2	Os10g0575000	LOC_Os10g42430	JA	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Overall, we conclude that OsMYC2 acts as a positive regulator of early JA signals in the JA-induced resistance against Xoo in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	bacterial blight	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.
OsMYC2	Os10g0575000	LOC_Os10g42430	ja	OsMYC2, an essential factor for JA-inductive sakuranetin production in rice, interacts with MYC2-like proteins that enhance its transactivation ability.	Our results indicate that JA signalling via OsMYC2 is reinforced by OsMYL1 and OsMYL2, resulting in the inductive production of sakuranetin during defence responses in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	JA	OsMYC2, an essential factor for JA-inductive sakuranetin production in rice, interacts with MYC2-like proteins that enhance its transactivation ability.	Our results indicate that JA signalling via OsMYC2 is reinforced by OsMYL1 and OsMYL2, resulting in the inductive production of sakuranetin during defence responses in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	defence	OsMYC2, an essential factor for JA-inductive sakuranetin production in rice, interacts with MYC2-like proteins that enhance its transactivation ability.	Our results indicate that JA signalling via OsMYC2 is reinforced by OsMYL1 and OsMYL2, resulting in the inductive production of sakuranetin during defence responses in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	defence response	OsMYC2, an essential factor for JA-inductive sakuranetin production in rice, interacts with MYC2-like proteins that enhance its transactivation ability.	Our results indicate that JA signalling via OsMYC2 is reinforced by OsMYL1 and OsMYL2, resulting in the inductive production of sakuranetin during defence responses in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	JA signalling	OsMYC2, an essential factor for JA-inductive sakuranetin production in rice, interacts with MYC2-like proteins that enhance its transactivation ability.	Our results indicate that JA signalling via OsMYC2 is reinforced by OsMYL1 and OsMYL2, resulting in the inductive production of sakuranetin during defence responses in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	transcription factor	OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.	Furthermore, a substantial change was noted in the expression of distinct types of transcription factors, such as MYB-type factors, likely depicting the importance of OsMYC2 in not only defence responses but also other morphogenetic events
OsMYC2	Os10g0575000	LOC_Os10g42430	jasmonic	OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.	OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.
OsMYC2	Os10g0575000	LOC_Os10g42430	jasmonic acid	OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.	OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.
OsMYC2	Os10g0575000	LOC_Os10g42430	defence	OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.	Furthermore, a substantial change was noted in the expression of distinct types of transcription factors, such as MYB-type factors, likely depicting the importance of OsMYC2 in not only defence responses but also other morphogenetic events
OsMYC2	Os10g0575000	LOC_Os10g42430	defence response	OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.	Furthermore, a substantial change was noted in the expression of distinct types of transcription factors, such as MYB-type factors, likely depicting the importance of OsMYC2 in not only defence responses but also other morphogenetic events
OsMYC2	Os10g0575000	LOC_Os10g42430	leaf	Identification of OsMYC2-regulated senescence-associated genes in rice.	The jasmonic acid (JA)-responsive transcription factor OsMYC2 acts as a positive regulator of leaf senescence by direct regulation of some senescence-associated genes in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	leaf	Identification of OsMYC2-regulated senescence-associated genes in rice.	Here, we report that OsMYC2 plays an important role in leaf senescence under dark-induced senescence (DIS) conditions
OsMYC2	Os10g0575000	LOC_Os10g42430	leaf	Identification of OsMYC2-regulated senescence-associated genes in rice.	Overexpression of OsMYC2 significantly promoted leaf senescence, indicated by reduction of chlorophyll content under DIS conditions in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	leaf	Identification of OsMYC2-regulated senescence-associated genes in rice.	These results suggest that OsMYC2 acts as a positive regulator of leaf senescence by direct- or indirect-regulation of SAGs in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	leaf senescence	Identification of OsMYC2-regulated senescence-associated genes in rice.	The jasmonic acid (JA)-responsive transcription factor OsMYC2 acts as a positive regulator of leaf senescence by direct regulation of some senescence-associated genes in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	leaf senescence	Identification of OsMYC2-regulated senescence-associated genes in rice.	Here, we report that OsMYC2 plays an important role in leaf senescence under dark-induced senescence (DIS) conditions
OsMYC2	Os10g0575000	LOC_Os10g42430	leaf senescence	Identification of OsMYC2-regulated senescence-associated genes in rice.	Overexpression of OsMYC2 significantly promoted leaf senescence, indicated by reduction of chlorophyll content under DIS conditions in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	leaf senescence	Identification of OsMYC2-regulated senescence-associated genes in rice.	These results suggest that OsMYC2 acts as a positive regulator of leaf senescence by direct- or indirect-regulation of SAGs in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	transcription factor	Identification of OsMYC2-regulated senescence-associated genes in rice.	The jasmonic acid (JA)-responsive transcription factor OsMYC2 acts as a positive regulator of leaf senescence by direct regulation of some senescence-associated genes in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	senescence	Identification of OsMYC2-regulated senescence-associated genes in rice.	The jasmonic acid (JA)-responsive transcription factor OsMYC2 acts as a positive regulator of leaf senescence by direct regulation of some senescence-associated genes in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	senescence	Identification of OsMYC2-regulated senescence-associated genes in rice.	Here, we report that OsMYC2 plays an important role in leaf senescence under dark-induced senescence (DIS) conditions
OsMYC2	Os10g0575000	LOC_Os10g42430	senescence	Identification of OsMYC2-regulated senescence-associated genes in rice.	These results suggest that OsMYC2 acts as a positive regulator of leaf senescence by direct- or indirect-regulation of SAGs in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	jasmonic	Identification of OsMYC2-regulated senescence-associated genes in rice.	The jasmonic acid (JA)-responsive transcription factor OsMYC2 acts as a positive regulator of leaf senescence by direct regulation of some senescence-associated genes in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	jasmonic acid	Identification of OsMYC2-regulated senescence-associated genes in rice.	The jasmonic acid (JA)-responsive transcription factor OsMYC2 acts as a positive regulator of leaf senescence by direct regulation of some senescence-associated genes in rice
OsMYC2	Os10g0575000	LOC_Os10g42430	growth	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	In agreement with AtMYC2 function, OsMYC2 over-expression and RNAi lines showed enhanced and suppressed seedling growth compared to WT plants respectively under blue light, and showed little effect under white light or dark
OsMYC2	Os10g0575000	LOC_Os10g42430	seedling	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	However, the role of OsMYC2 in seedling development under ABA, dark or light of specific wavelengths was not known
OsMYC2	Os10g0575000	LOC_Os10g42430	seedling	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	In agreement with AtMYC2 function, OsMYC2 over-expression and RNAi lines showed enhanced and suppressed seedling growth compared to WT plants respectively under blue light, and showed little effect under white light or dark
OsMYC2	Os10g0575000	LOC_Os10g42430	seedling	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	However, in contrast to AtMYC2 function, OsMYC2 influences seedling development under red light and show no effect in ABA-mediated seed germination
OsMYC2	Os10g0575000	LOC_Os10g42430	development	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	However, the role of OsMYC2 in seedling development under ABA, dark or light of specific wavelengths was not known
OsMYC2	Os10g0575000	LOC_Os10g42430	development	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	However, in contrast to AtMYC2 function, OsMYC2 influences seedling development under red light and show no effect in ABA-mediated seed germination
OsMYC2	Os10g0575000	LOC_Os10g42430	seed	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	However, in contrast to AtMYC2 function, OsMYC2 influences seedling development under red light and show no effect in ABA-mediated seed germination
OsMYC2	Os10g0575000	LOC_Os10g42430	seed germination	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	However, in contrast to AtMYC2 function, OsMYC2 influences seedling development under red light and show no effect in ABA-mediated seed germination
OsMYC2	Os10g0575000	LOC_Os10g42430	resistance	Rice stripe virus suppresses jasmonic acid-mediated resistance by hijacking brassinosteroid signaling pathway in rice	Moreover, the enhancement of RSV resistance conferred by BR is impaired in OsMYC2 (a key positive regulator of JA response) knockout plants, suggesting that BR-mediated RSV resistance requires active JA pathway
OsMYC2	Os10g0575000	LOC_Os10g42430	ja	Rice stripe virus suppresses jasmonic acid-mediated resistance by hijacking brassinosteroid signaling pathway in rice	Moreover, the enhancement of RSV resistance conferred by BR is impaired in OsMYC2 (a key positive regulator of JA response) knockout plants, suggesting that BR-mediated RSV resistance requires active JA pathway
OsMYC2	Os10g0575000	LOC_Os10g42430	JA	Rice stripe virus suppresses jasmonic acid-mediated resistance by hijacking brassinosteroid signaling pathway in rice	Moreover, the enhancement of RSV resistance conferred by BR is impaired in OsMYC2 (a key positive regulator of JA response) knockout plants, suggesting that BR-mediated RSV resistance requires active JA pathway
OsMYC2	Os10g0575000	LOC_Os10g42430	defense	Rice stripe virus suppresses jasmonic acid-mediated resistance by hijacking brassinosteroid signaling pathway in rice	OsGSK2 physically interacts with OsMYC2, resulting in the degradation of OsMYC2 by phosphorylation and reduces JA-mediated defense to facilitate virus infection
OsMYC2	Os10g0575000	LOC_Os10g42430	BR	Rice stripe virus suppresses jasmonic acid-mediated resistance by hijacking brassinosteroid signaling pathway in rice	Moreover, the enhancement of RSV resistance conferred by BR is impaired in OsMYC2 (a key positive regulator of JA response) knockout plants, suggesting that BR-mediated RSV resistance requires active JA pathway
OsMYC2	Os10g0575000	LOC_Os10g42430	RSV	Rice stripe virus suppresses jasmonic acid-mediated resistance by hijacking brassinosteroid signaling pathway in rice	Moreover, the enhancement of RSV resistance conferred by BR is impaired in OsMYC2 (a key positive regulator of JA response) knockout plants, suggesting that BR-mediated RSV resistance requires active JA pathway
OsMYC2	Os10g0575000	LOC_Os10g42430	resistance	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae
OsMYC2	Os10g0575000	LOC_Os10g42430	resistance	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	Here, we report that Pi starvation in rice activates the OsMYC2 signaling and enhances resistance to Xanthomonas oryzae pv
OsMYC2	Os10g0575000	LOC_Os10g42430	resistance	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	Molecular analyses and infection studies using OsPHR2-Ov1 and phr2 mutants further demonstrated that OsPHR2 enhances antibacterial resistance via transcriptional regulation of OsMYC2 expression, indicating a positive role of OsPHR2-OsMYC2 crosstalk in modulating the OsMYC2 signaling and Xoo infection
OsMYC2	Os10g0575000	LOC_Os10g42430	resistance	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	Genetic analysis and infection assays using myc2 mutants revealed that Pi starvation-induced OsMYC2 signaling activation and consequent Xoo resistance depends on the regulation of OsMYC2
OsMYC2	Os10g0575000	LOC_Os10g42430	xoo	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	Molecular analyses and infection studies using OsPHR2-Ov1 and phr2 mutants further demonstrated that OsPHR2 enhances antibacterial resistance via transcriptional regulation of OsMYC2 expression, indicating a positive role of OsPHR2-OsMYC2 crosstalk in modulating the OsMYC2 signaling and Xoo infection
OsMYC2	Os10g0575000	LOC_Os10g42430	xoo	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	Genetic analysis and infection assays using myc2 mutants revealed that Pi starvation-induced OsMYC2 signaling activation and consequent Xoo resistance depends on the regulation of OsMYC2
OsMYC2	Os10g0575000	LOC_Os10g42430	phosphate	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae
OsMYC2	Os10g0575000	LOC_Os10g42430	Pi	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	Here, we report that Pi starvation in rice activates the OsMYC2 signaling and enhances resistance to Xanthomonas oryzae pv
OsMYC2	Os10g0575000	LOC_Os10g42430	Pi	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	Genetic analysis and infection assays using myc2 mutants revealed that Pi starvation-induced OsMYC2 signaling activation and consequent Xoo resistance depends on the regulation of OsMYC2
OsMYC2	Os10g0575000	LOC_Os10g42430	pi	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	Here, we report that Pi starvation in rice activates the OsMYC2 signaling and enhances resistance to Xanthomonas oryzae pv
OsMYC2	Os10g0575000	LOC_Os10g42430	pi	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	Genetic analysis and infection assays using myc2 mutants revealed that Pi starvation-induced OsMYC2 signaling activation and consequent Xoo resistance depends on the regulation of OsMYC2
OsMYC2	Os10g0575000	LOC_Os10g42430	phosphate starvation	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae
osmyoXIB	Os02g0816900	LOC_Os02g57190	anther	ORYZA SATIVA MYOSIN XI B controls pollen development by photoperiod-sensitive protein localizations	Under both SD and LD conditions, the OSMYOXIB transcript was detected in whole anthers
osmyoXIB	Os02g0816900	LOC_Os02g57190	anther	ORYZA SATIVA MYOSIN XI B controls pollen development by photoperiod-sensitive protein localizations	However, under SD conditions, the OSMYOXIB-GUS fusion protein was localized only in the epidermal layer of anthers due to the lack of 3'-untranslated region (3'-UTR) and to dilute (DIL) domain sequences following the Ds insertion
OsNAAT1	Os02g0306401	LOC_Os02g20360	root	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice	In the present study, we identified six rice NAAT genes (OsNAAT1-6) by screening a cDNA library made from Fe-deficient rice roots and by searching databases
OsNAAT1	Os02g0306401	LOC_Os02g20360	root	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice	Northern blot and RT-PCR analysis showed that OsNAAT1, but not OsNAAT2-6, was strongly up-regulated by Fe deficiency, both in roots and shoots
OsNAAT1	Os02g0306401	LOC_Os02g20360	root	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice	Promoter-GUS analysis revealed that OsNAAT1 was expressed in companion and pericycle cells adjacent to the protoxylem of Fe-sufficient roots
OsNAAT1	Os02g0306401	LOC_Os02g20360	shoot	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice	Northern blot and RT-PCR analysis showed that OsNAAT1, but not OsNAAT2-6, was strongly up-regulated by Fe deficiency, both in roots and shoots
OsNAAT1	Os02g0306401	LOC_Os02g20360	shoot	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice	OsNAAT1 expression was also observed in the companion cells of Fe-sufficient shoots, and was clearly induced in all the cells of Fe-deficient leaves
OsNAAT1	Os02g0306401	LOC_Os02g20360	xylem	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice	Promoter-GUS analysis revealed that OsNAAT1 was expressed in companion and pericycle cells adjacent to the protoxylem of Fe-sufficient roots
OsNAAT1	Os02g0306401	LOC_Os02g20360	Fe	Effects of Fe and Mn cations on Cd uptake by rice plant in hydroponic culture experiment	Meanwhile, application of sufficient doses of Fe and Cd in solution culture increased RE of CAL1, OsNRAMP5, OsNRAMP1, OsIRT1, and OsNAAT1 in roots, whereas expression level of OsHMA3 was decreased
OsNAAT2	Os02g0302700	LOC_Os02g19970	root	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice	Northern blot and RT-PCR analysis showed that OsNAAT1, but not OsNAAT2-6, was strongly up-regulated by Fe deficiency, both in roots and shoots
OsNAAT2	Os02g0302700	LOC_Os02g19970	shoot	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice	Northern blot and RT-PCR analysis showed that OsNAAT1, but not OsNAAT2-6, was strongly up-regulated by Fe deficiency, both in roots and shoots
OsNAC016	Os01g0104200	LOC_Os01g01430	brassinosteroid	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Further investigation revealed that OsNAC016 regulated the expression of the brassinosteroid biosynthesis gene D2 by binding to its promoter
OsNAC016	Os01g0104200	LOC_Os01g01430	BR	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Moreover, OsNAC016 interacted with and was phosphorylated by GSK3/SHAGGY-LIKE KINASE2 (GSK2), a negative regulator in the BR pathway
OsNAC016	Os01g0104200	LOC_Os01g01430	Brassinosteroid	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Further investigation revealed that OsNAC016 regulated the expression of the brassinosteroid biosynthesis gene D2 by binding to its promoter
OsNAC016	Os01g0104200	LOC_Os01g01430	drought	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.
OsNAC016	Os01g0104200	LOC_Os01g01430	drought	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	drought	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Our findings establish that OsNAC016 is positively involved in BR-regulated rice architecture, negatively modulates ABA-mediated drought tolerance, and is regulated by GSK2, SAPK8, and OsPUB43 through post-translational modification
OsNAC016	Os01g0104200	LOC_Os01g01430	tolerance	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.
OsNAC016	Os01g0104200	LOC_Os01g01430	tolerance	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	ABA	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	drought tolerance	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.
OsNAC016	Os01g0104200	LOC_Os01g01430	drought tolerance	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	drought tolerance	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Our findings establish that OsNAC016 is positively involved in BR-regulated rice architecture, negatively modulates ABA-mediated drought tolerance, and is regulated by GSK2, SAPK8, and OsPUB43 through post-translational modification
OsNAC016	Os01g0104200	LOC_Os01g01430	stress	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	stress tolerance	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	architecture	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.
OsNAC016	Os01g0104200	LOC_Os01g01430	stomatal	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	protein kinase	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Further, OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE8 (SAPK8) phosphorylated OsNAC016 and reduced its stability
OsNAC016	Os01g0104200	LOC_Os01g01430	erect	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 The loss-of-function mutant osnac016 exhibited erect leaves and shortened internodes, but OsNAC016-overexpressing plants had opposite phenotypes
OsNAC016	Os01g0104200	LOC_Os01g01430	plant architecture	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.
OsNAC016	Os01g0104200	LOC_Os01g01430	drought stress	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	water loss	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	drought stress 	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	 BR 	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Moreover, OsNAC016 interacted with and was phosphorylated by GSK3/SHAGGY-LIKE KINASE2 (GSK2), a negative regulator in the BR pathway
OsNAC016	Os01g0104200	LOC_Os01g01430	 ABA 	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Meanwhile, the mutant osnac016 had improved drought stress tolerance, supported by a decreased water loss rate and enhanced stomatal closure in response to exogenous ABA, but OsNAC016-overexpressing plants showed attenuated drought tolerance and reduced ABA sensitivity
OsNAC016	Os01g0104200	LOC_Os01g01430	osmotic stress	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	 Further, OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE8 (SAPK8) phosphorylated OsNAC016 and reduced its stability
OsNAC055	Os03g0109000	LOC_Os03g01870	transcription factor	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.
OsNAC055	Os03g0109000	LOC_Os03g01870	transcription factor	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 In this study, we identified a rice NAC (NAM, ATAF1/2, CUC2) transcription factor OsNAC055 that regulates GA-mediated lignin biosynthesis
OsNAC055	Os03g0109000	LOC_Os03g01870	transcription factor	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 As a nucleus-localized transcription factor, OsNAC055 exhibits the transcriptional activation activity
OsNAC055	Os03g0109000	LOC_Os03g01870	transcription factor	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 Together, our results provide the evidence that OsNAC055 functions as an essential transcription factor to regulate the GA-mediated lignin biosynthesis, which provides a strategy for manipulating lignin production
OsNAC055	Os03g0109000	LOC_Os03g01870	ga	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 On the other hand, phytohormone measurement showed that OsNAC055 overexpression significantly increased exogenous GA3 levels in rice plants by regulating GA biosynthetic gene OsGA20ox2
OsNAC055	Os03g0109000	LOC_Os03g01870	ga	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 Moreover, yeast two-hybrid and bimolecular fluorescence complement (BiFC) assays indicated that OsNAC055 interacts with SLENDER RICE1 (SLR1), the repressor in GA signaling
OsNAC055	Os03g0109000	LOC_Os03g01870	GA	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 On the other hand, phytohormone measurement showed that OsNAC055 overexpression significantly increased exogenous GA3 levels in rice plants by regulating GA biosynthetic gene OsGA20ox2
OsNAC055	Os03g0109000	LOC_Os03g01870	GA	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 Moreover, yeast two-hybrid and bimolecular fluorescence complement (BiFC) assays indicated that OsNAC055 interacts with SLENDER RICE1 (SLR1), the repressor in GA signaling
OsNAC055	Os03g0109000	LOC_Os03g01870	lignin	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.
OsNAC055	Os03g0109000	LOC_Os03g01870	lignin	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 In this study, we identified a rice NAC (NAM, ATAF1/2, CUC2) transcription factor OsNAC055 that regulates GA-mediated lignin biosynthesis
OsNAC055	Os03g0109000	LOC_Os03g01870	lignin	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 Overexpression of OsNAC055 increases the lignin content in rice straw
OsNAC055	Os03g0109000	LOC_Os03g01870	lignin	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 Further ChIP-qPCR analysis and transient transactivation assays indicated that OsNAC055 directly activates rice lignin biosynthetic genes CINNAMOYL-CoA REDUCTASE 10 (OsCCR10) and CINNAMYL ALCOHOL DEHYDROGENASE 2 (OsCAD2) by binding to their promoters
OsNAC055	Os03g0109000	LOC_Os03g01870	lignin	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 Together, our results provide the evidence that OsNAC055 functions as an essential transcription factor to regulate the GA-mediated lignin biosynthesis, which provides a strategy for manipulating lignin production
OsNAC055	Os03g0109000	LOC_Os03g01870	phytohormone	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 On the other hand, phytohormone measurement showed that OsNAC055 overexpression significantly increased exogenous GA3 levels in rice plants by regulating GA biosynthetic gene OsGA20ox2
OsNAC055	Os03g0109000	LOC_Os03g01870	GA biosynthetic	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 On the other hand, phytohormone measurement showed that OsNAC055 overexpression significantly increased exogenous GA3 levels in rice plants by regulating GA biosynthetic gene OsGA20ox2
OsNAC055	Os03g0109000	LOC_Os03g01870	 ga 	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 On the other hand, phytohormone measurement showed that OsNAC055 overexpression significantly increased exogenous GA3 levels in rice plants by regulating GA biosynthetic gene OsGA20ox2
OsNAC055	Os03g0109000	LOC_Os03g01870	 ga 	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 Moreover, yeast two-hybrid and bimolecular fluorescence complement (BiFC) assays indicated that OsNAC055 interacts with SLENDER RICE1 (SLR1), the repressor in GA signaling
OsNAC055	Os03g0109000	LOC_Os03g01870	lignin biosynthesis	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.
OsNAC055	Os03g0109000	LOC_Os03g01870	lignin biosynthesis	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 In this study, we identified a rice NAC (NAM, ATAF1/2, CUC2) transcription factor OsNAC055 that regulates GA-mediated lignin biosynthesis
OsNAC055	Os03g0109000	LOC_Os03g01870	lignin biosynthesis	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 Together, our results provide the evidence that OsNAC055 functions as an essential transcription factor to regulate the GA-mediated lignin biosynthesis, which provides a strategy for manipulating lignin production
OsNAC055	Os03g0109000	LOC_Os03g01870	dehydrogenase	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	 Further ChIP-qPCR analysis and transient transactivation assays indicated that OsNAC055 directly activates rice lignin biosynthetic genes CINNAMOYL-CoA REDUCTASE 10 (OsCCR10) and CINNAMYL ALCOHOL DEHYDROGENASE 2 (OsCAD2) by binding to their promoters
OsNAC109	Os09g0552800	LOC_Os09g38000	leaf	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.	Our results demonstrated that OsNAC109 is essential to rice leaf senescence, growth and development through and phytohormone-associated genes in rice
OsNAC109	Os09g0552800	LOC_Os09g38000	leaf senescence	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.	Our results demonstrated that OsNAC109 is essential to rice leaf senescence, growth and development through and phytohormone-associated genes in rice
OsNAC109	Os09g0552800	LOC_Os09g38000	growth	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.
OsNAC109	Os09g0552800	LOC_Os09g38000	growth	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.	We demonstrate that OsNAC109 regulates senescence, growth and development via binding to the cis-element CNTCSSNNSCAVG and altering the expression of multiple and hormone-associated genes in rice
OsNAC109	Os09g0552800	LOC_Os09g38000	growth	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.	Our results demonstrated that OsNAC109 is essential to rice leaf senescence, growth and development through and phytohormone-associated genes in rice
OsNAC109	Os09g0552800	LOC_Os09g38000	development	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.
OsNAC109	Os09g0552800	LOC_Os09g38000	development	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.	We demonstrate that OsNAC109 regulates senescence, growth and development via binding to the cis-element CNTCSSNNSCAVG and altering the expression of multiple and hormone-associated genes in rice
OsNAC109	Os09g0552800	LOC_Os09g38000	development	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.	Our results demonstrated that OsNAC109 is essential to rice leaf senescence, growth and development through and phytohormone-associated genes in rice
OsNAC109	Os09g0552800	LOC_Os09g38000	nucleus	OsNAC109 regulates senescence, growth and development by altering the expression of and phytohormone-associated genes in rice.	YL3 was expressed in all tissues tested and predicted to encode a transcriptional factor OsNAC109 which localizes to the nucleus
OsNAC14	Os01g0675800	LOC_Os01g48446	defense	Overexpression ofOsNAC14Improves Drought Tolerance in Rice.	Collectively, these results indicate that OsNAC14 mediates drought tolerance by recruiting factors involved in DNA damage repair and defense response resulting in improved tolerance to drought
OsNAC14	Os01g0675800	LOC_Os01g48446	drought	Overexpression ofOsNAC14Improves Drought Tolerance in Rice.	Collectively, these results indicate that OsNAC14 mediates drought tolerance by recruiting factors involved in DNA damage repair and defense response resulting in improved tolerance to drought
OsNAC14	Os01g0675800	LOC_Os01g48446	tolerance	Overexpression ofOsNAC14Improves Drought Tolerance in Rice.	Collectively, these results indicate that OsNAC14 mediates drought tolerance by recruiting factors involved in DNA damage repair and defense response resulting in improved tolerance to drought
OsNAC14	Os01g0675800	LOC_Os01g48446	defense response	Overexpression ofOsNAC14Improves Drought Tolerance in Rice.	Collectively, these results indicate that OsNAC14 mediates drought tolerance by recruiting factors involved in DNA damage repair and defense response resulting in improved tolerance to drought
OsNAC14	Os01g0675800	LOC_Os01g48446	drought tolerance	Overexpression ofOsNAC14Improves Drought Tolerance in Rice.	Collectively, these results indicate that OsNAC14 mediates drought tolerance by recruiting factors involved in DNA damage repair and defense response resulting in improved tolerance to drought
OsNAC15	Os07g0684800	LOC_Os07g48550	transcription factor	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	 OsNAC15 is a functional transcription factor with transactivation and DNA binding activities
OsNAC15	Os07g0684800	LOC_Os07g48550	stress	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	 OsNAC15 expresses in all tissues of different developmental stages, and is repressed by Zn deficiency and induced by Cd stress
OsNAC15	Os07g0684800	LOC_Os07g48550	stress	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	 Expression analysis of rice ZIP family genes suggested that the knockout of OsNAC15 activates or inhibits their transcriptions under Zn deficiency or Cd stress conditions
OsNAC15	Os07g0684800	LOC_Os07g48550	tolerance	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.
OsNAC15	Os07g0684800	LOC_Os07g48550	vegetative	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	 Knockout of OsNAC15 reduced ZDT and CDT at the vegetative stage
OsNAC15	Os07g0684800	LOC_Os07g48550	zinc	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.
OsNAC15	Os07g0684800	LOC_Os07g48550	zinc	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	 The yeast one-hybrid assay, transient transcriptional activity assay using the dual-luciferase reporter system and electrophoretic mobility shift assay demonstrated that OsNAC15 directly binds to the zinc deficiency-responsive element motifs in the promoters of OsZIP7 and OsZIP10 to repress their transcriptions
OsNAC15	Os07g0684800	LOC_Os07g48550	cadmium	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.
OsNAC17	Os03g0327100	LOC_Os03g21030	drought	Rice NAC17 transcription factor enhances drought tolerance by modulating lignin accumulation.	 OsNAC17 is localized to the nucleus, and its expression was significantly induced under drought conditions
OsNAC17	Os03g0327100	LOC_Os03g21030	drought	Rice NAC17 transcription factor enhances drought tolerance by modulating lignin accumulation.	 Together, our results show that OsNAC17 contributes to drought tolerance through lignin biosynthesis in rice
OsNAC17	Os03g0327100	LOC_Os03g21030	tolerance	Rice NAC17 transcription factor enhances drought tolerance by modulating lignin accumulation.	 Together, our results show that OsNAC17 contributes to drought tolerance through lignin biosynthesis in rice
OsNAC17	Os03g0327100	LOC_Os03g21030	drought tolerance	Rice NAC17 transcription factor enhances drought tolerance by modulating lignin accumulation.	 Together, our results show that OsNAC17 contributes to drought tolerance through lignin biosynthesis in rice
OsNAC17	Os03g0327100	LOC_Os03g21030	lignin	Rice NAC17 transcription factor enhances drought tolerance by modulating lignin accumulation.	 Further investigation revealed that OsNAC17 positively regulates several lignin biosynthetic genes and promotes lignin accumulation in leaves and roots
OsNAC17	Os03g0327100	LOC_Os03g21030	lignin	Rice NAC17 transcription factor enhances drought tolerance by modulating lignin accumulation.	 Together, our results show that OsNAC17 contributes to drought tolerance through lignin biosynthesis in rice
OsNAC17	Os03g0327100	LOC_Os03g21030	lignin biosynthesis	Rice NAC17 transcription factor enhances drought tolerance by modulating lignin accumulation.	 Together, our results show that OsNAC17 contributes to drought tolerance through lignin biosynthesis in rice
OsNAC17	Os03g0327100	LOC_Os03g21030	transcriptional activator	Rice NAC17 transcription factor enhances drought tolerance by modulating lignin accumulation.	 A transactivation assay in yeast revealed that the OsNAC17 is a transcriptional activator, harboring an activation domain in the C-terminal region
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	salt	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	ABA	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	The expression of OsNAC19 in rice leaves could be induced by the infection of blast fungus, and by application of exogenous methyl jasmonate (MeJA), ABA and ethylene but ethylene had a relatively weak induction effect
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	sheath	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	The expression of gene OsNAC19 was high in rice seedling roots, culms and blade sheathes, but its expression in rice leaves was low
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	oxidative	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	Here, a rice homologue of SRO (similar to RCD one), termed OsSRO1c, was identified as a direct target gene of SNAC1 (stress-responsive NAC 1) involved in the regulation of stomatal aperture and oxidative response
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	oxidative	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	oxidative	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	root architecture	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Such up-regulated genes that are commonly and specifically up-regulated in OsNAC9 transgenic roots may account for the altered root architecture conferring increased drought resistance phenotype
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	root architecture	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	Here, a rice homologue of SRO (similar to RCD one), termed OsSRO1c, was identified as a direct target gene of SNAC1 (stress-responsive NAC 1) involved in the regulation of stomatal aperture and oxidative response
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Under drought conditions, RCc3:OsNAC9 plants showed an increased grain yield of 28%-72%, whilst the GOS2:OsNAC9 plants remained unchanged
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The aerenchyma of RCc3:OsNAC9 roots was enlarged to a greater extent than those of GOS2:OsNAC9 and non-transgenic (NT) roots, suggesting the importance of this phenotype for enhanced drought resistance
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Such up-regulated genes that are commonly and specifically up-regulated in OsNAC9 transgenic roots may account for the altered root architecture conferring increased drought resistance phenotype
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	ethylene	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	The expression of OsNAC19 in rice leaves could be induced by the infection of blast fungus, and by application of exogenous methyl jasmonate (MeJA), ABA and ethylene but ethylene had a relatively weak induction effect
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	root	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	The expression of gene OsNAC19 was high in rice seedling roots, culms and blade sheathes, but its expression in rice leaves was low
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	yield	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Field evaluations over two cultivating seasons showed that grain yields of the RCc3:OsNAC9 and the GOS2:OsNAC9 plants were increased by 13%-18% and 13%-32% under normal conditions, respectively
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	yield	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Under drought conditions, RCc3:OsNAC9 plants showed an increased grain yield of 28%-72%, whilst the GOS2:OsNAC9 plants remained unchanged
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	yield	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	yield	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	Here, we show that overexpression of stress responsive gene SNAC1 (STRESS-RESPONSIVE NAC 1) significantly enhances drought resistance in transgenic rice (22-34% higher seed setting than control) in the field under severe drought stress conditions at the reproductive stage while showing no phenotypic changes or yield penalty
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	The OsSKIPa-overexpressing rice showed significantly increased reactive oxygen species-scavenging ability and transcript levels of many stress-related genes, including SNAC1 and rice homologs of CBF2, PP2C, and RD22, under drought stress conditions
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	salinity	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	Our data suggest that SNAC1 holds promising utility in improving drought and salinity tolerance in rice
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	grain	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Field evaluations over two cultivating seasons showed that grain yields of the RCc3:OsNAC9 and the GOS2:OsNAC9 plants were increased by 13%-18% and 13%-32% under normal conditions, respectively
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	grain	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Under drought conditions, RCc3:OsNAC9 plants showed an increased grain yield of 28%-72%, whilst the GOS2:OsNAC9 plants remained unchanged
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	grain	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	architecture	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Such up-regulated genes that are commonly and specifically up-regulated in OsNAC9 transgenic roots may account for the altered root architecture conferring increased drought resistance phenotype
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	architecture	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought resistance	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The aerenchyma of RCc3:OsNAC9 roots was enlarged to a greater extent than those of GOS2:OsNAC9 and non-transgenic (NT) roots, suggesting the importance of this phenotype for enhanced drought resistance
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought resistance	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Such up-regulated genes that are commonly and specifically up-regulated in OsNAC9 transgenic roots may account for the altered root architecture conferring increased drought resistance phenotype
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought resistance	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	jasmonate	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	The expression of OsNAC19 in rice leaves could be induced by the infection of blast fungus, and by application of exogenous methyl jasmonate (MeJA), ABA and ethylene but ethylene had a relatively weak induction effect
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	blast	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	In this research, a full-length cDNA clone OsNAC19 (Oryza sativa NAC19), encoding a novel NAC-domain protein, was isolated from a cDNA library prepared with rice leaves infected by incompatible race 131 of blast fungus (Magnaporthe grisea)
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	blast	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	The expression of OsNAC19 in rice leaves could be induced by the infection of blast fungus, and by application of exogenous methyl jasmonate (MeJA), ABA and ethylene but ethylene had a relatively weak induction effect
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	seed	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	Here, we show that overexpression of stress responsive gene SNAC1 (STRESS-RESPONSIVE NAC 1) significantly enhances drought resistance in transgenic rice (22-34% higher seed setting than control) in the field under severe drought stress conditions at the reproductive stage while showing no phenotypic changes or yield penalty
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	culm	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	The expression of gene OsNAC19 was high in rice seedling roots, culms and blade sheathes, but its expression in rice leaves was low
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	Here, we show that overexpression of stress responsive gene SNAC1 (STRESS-RESPONSIVE NAC 1) significantly enhances drought resistance in transgenic rice (22-34% higher seed setting than control) in the field under severe drought stress conditions at the reproductive stage while showing no phenotypic changes or yield penalty
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	SNAC1 is induced predominantly in guard cells by drought and encodes a NAM, ATAF, and CUC (NAC) transcription factor with transactivation activity
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	Our data suggest that SNAC1 holds promising utility in improving drought and salinity tolerance in rice
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought resistance	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	Here, we show that overexpression of stress responsive gene SNAC1 (STRESS-RESPONSIVE NAC 1) significantly enhances drought resistance in transgenic rice (22-34% higher seed setting than control) in the field under severe drought stress conditions at the reproductive stage while showing no phenotypic changes or yield penalty
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	root	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Root-specific (RCc3) and constitutive (GOS2) promoters were used to overexpress OsNAC9 and produced the transgenic RCc3:OsNAC9 and GOS2:OsNAC9 plants
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	root	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The aerenchyma of RCc3:OsNAC9 roots was enlarged to a greater extent than those of GOS2:OsNAC9 and non-transgenic (NT) roots, suggesting the importance of this phenotype for enhanced drought resistance
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	root	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Interestingly, O-methyltransferase, a gene necessary for barrier formation, was specifically up-regulated only in the RCc3:OsNAC9 roots
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	root	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Such up-regulated genes that are commonly and specifically up-regulated in OsNAC9 transgenic roots may account for the altered root architecture conferring increased drought resistance phenotype
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	root	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	seedling	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	The expression of gene OsNAC19 was high in rice seedling roots, culms and blade sheathes, but its expression in rice leaves was low
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	transcription factor	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	reproductive	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	Here, we show that overexpression of stress responsive gene SNAC1 (STRESS-RESPONSIVE NAC 1) significantly enhances drought resistance in transgenic rice (22-34% higher seed setting than control) in the field under severe drought stress conditions at the reproductive stage while showing no phenotypic changes or yield penalty
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	grain yield	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Field evaluations over two cultivating seasons showed that grain yields of the RCc3:OsNAC9 and the GOS2:OsNAC9 plants were increased by 13%-18% and 13%-32% under normal conditions, respectively
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	grain yield	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	Under drought conditions, RCc3:OsNAC9 plants showed an increased grain yield of 28%-72%, whilst the GOS2:OsNAC9 plants remained unchanged
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	grain yield	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	transcription factor	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	SNAC1 is induced predominantly in guard cells by drought and encodes a NAM, ATAF, and CUC (NAC) transcription factor with transactivation activity
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	Here, a rice homologue of SRO (similar to RCD one), termed OsSRO1c, was identified as a direct target gene of SNAC1 (stress-responsive NAC 1) involved in the regulation of stomatal aperture and oxidative response
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	transcription factor	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	A stress-responsive NAC transcription factor gene SNAC1 has been reported for its function in the positive regulation of drought resistance in rice, and several downstream SNAC1 targets have been identified
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	resistance	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	A stress-responsive NAC transcription factor gene SNAC1 has been reported for its function in the positive regulation of drought resistance in rice, and several downstream SNAC1 targets have been identified
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	A stress-responsive NAC transcription factor gene SNAC1 has been reported for its function in the positive regulation of drought resistance in rice, and several downstream SNAC1 targets have been identified
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	However, a complete regulatory network mediated by SNAC1 in drought response remains unknown
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	In this study, we performed Chromatin immunoprecipitation sequencing (ChIP-Seq) and RNA-Seq of SNAC1-overexpression transgenic rice (SNAC1-OE) lines and wild-type under normal and moderate drought stress conditions, to identify all SNAC1 target genes at a genome-wide scale by RNA-Seq analyses
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	ABA	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	SNAC1 can bind to the OsbZIP23 promoter, an important ABA signaling regulator, and positively regulate the expression of several ABA signaling genes
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	stress	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	In this study, we performed Chromatin immunoprecipitation sequencing (ChIP-Seq) and RNA-Seq of SNAC1-overexpression transgenic rice (SNAC1-OE) lines and wild-type under normal and moderate drought stress conditions, to identify all SNAC1 target genes at a genome-wide scale by RNA-Seq analyses
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	ABA	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	SNAC1 can bind to the OsbZIP23 promoter, an important ABA signaling regulator, and positively regulate the expression of several ABA signaling genes
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought stress	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	In this study, we performed Chromatin immunoprecipitation sequencing (ChIP-Seq) and RNA-Seq of SNAC1-overexpression transgenic rice (SNAC1-OE) lines and wild-type under normal and moderate drought stress conditions, to identify all SNAC1 target genes at a genome-wide scale by RNA-Seq analyses
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought resistance	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	A stress-responsive NAC transcription factor gene SNAC1 has been reported for its function in the positive regulation of drought resistance in rice, and several downstream SNAC1 targets have been identified
OsNAC19|SNAC1|OsNAC9	Os03g0815100	LOC_Os03g60080	drought stress	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	In this study, we performed Chromatin immunoprecipitation sequencing (ChIP-Seq) and RNA-Seq of SNAC1-overexpression transgenic rice (SNAC1-OE) lines and wild-type under normal and moderate drought stress conditions, to identify all SNAC1 target genes at a genome-wide scale by RNA-Seq analyses
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	branching	Overexpression of a NAC-domain protein promotes shoot branching in rice	Overexpression of OsNAC2 regulates shoot branching in rice
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	tiller	Overexpression of a NAC-domain protein promotes shoot branching in rice	Overexpression of OsNAC2 contributes tiller bud outgrowth, but does not affect tiller bud initiation
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	tiller	Overexpression of a NAC-domain protein promotes shoot branching in rice	Here, an activation-tagging mutant Ostil1 (Oryza sativa tillering1) was characterized, which showed increased tillers, enlarged tiller angle and semidwarf phenotype
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	tillering	Overexpression of a NAC-domain protein promotes shoot branching in rice	Here, an activation-tagging mutant Ostil1 (Oryza sativa tillering1) was characterized, which showed increased tillers, enlarged tiller angle and semidwarf phenotype
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	dwarf	Overexpression of a NAC-domain protein promotes shoot branching in rice	Here, an activation-tagging mutant Ostil1 (Oryza sativa tillering1) was characterized, which showed increased tillers, enlarged tiller angle and semidwarf phenotype
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	yield	Overexpression of a NAC-domain protein promotes shoot branching in rice	This suggests that OsNAC2 has potential utility for improving plant structure for higher light-use efficiency and higher yield potential in rice
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	shoot	Overexpression of a NAC-domain protein promotes shoot branching in rice	Overexpression of OsNAC2 regulates shoot branching in rice
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	tiller angle	Overexpression of a NAC-domain protein promotes shoot branching in rice	Here, an activation-tagging mutant Ostil1 (Oryza sativa tillering1) was characterized, which showed increased tillers, enlarged tiller angle and semidwarf phenotype
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	growth	Overexpression of a NAC-domain protein promotes shoot branching in rice	Overexpression of OsNAC2 contributes tiller bud outgrowth, but does not affect tiller bud initiation
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	transcription factor	OsNAC2 encoding a NAC transcription factor affects plant height through mediating the gibberellic acid pathway in rice.	OsNAC2 encoding a NAC transcription factor affects plant height through mediating the gibberellic acid pathway in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	height	OsNAC2 encoding a NAC transcription factor affects plant height through mediating the gibberellic acid pathway in rice.	OsNAC2 encoding a NAC transcription factor affects plant height through mediating the gibberellic acid pathway in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	height	OsNAC2 encoding a NAC transcription factor affects plant height through mediating the gibberellic acid pathway in rice.	Taken together, we proposed that OsNAC2 is a negative regulator of the plant height and flowering time, which acts by directly regulating key genes of the GA pathway in rice
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ga	OsNAC2 encoding a NAC transcription factor affects plant height through mediating the gibberellic acid pathway in rice.	Taken together, we proposed that OsNAC2 is a negative regulator of the plant height and flowering time, which acts by directly regulating key genes of the GA pathway in rice
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	flowering time	OsNAC2 encoding a NAC transcription factor affects plant height through mediating the gibberellic acid pathway in rice.	Taken together, we proposed that OsNAC2 is a negative regulator of the plant height and flowering time, which acts by directly regulating key genes of the GA pathway in rice
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	GA	OsNAC2 encoding a NAC transcription factor affects plant height through mediating the gibberellic acid pathway in rice.	Taken together, we proposed that OsNAC2 is a negative regulator of the plant height and flowering time, which acts by directly regulating key genes of the GA pathway in rice
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	resistance	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	With reduced yields under drought conditions at the flowering stage, OsNAC2 overexpression lines had lower resistance to high salt and drought conditions
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	drought	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	With reduced yields under drought conditions at the flowering stage, OsNAC2 overexpression lines had lower resistance to high salt and drought conditions
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	salt	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	With reduced yields under drought conditions at the flowering stage, OsNAC2 overexpression lines had lower resistance to high salt and drought conditions
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	tolerance	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	transcription factor	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	abiotic stress	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	abiotic stress	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	We further confirmed that OsNAC2 directly binds the promoters of LATE EMBRYOGENESIS ABUNDANT 3 (OsLEA3) and Stress-Activated Protein Kinases 1 (OsSAPK1), two marker genes in the abiotic stress and ABA response pathways, respectively
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	abiotic stress	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	Our results suggest that in rice OsNAC2 regulates both abiotic stress responses and ABA-mediated responses, and acts at the junction between the ABA and abiotic stress pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	We further confirmed that OsNAC2 directly binds the promoters of LATE EMBRYOGENESIS ABUNDANT 3 (OsLEA3) and Stress-Activated Protein Kinases 1 (OsSAPK1), two marker genes in the abiotic stress and ABA response pathways, respectively
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	Our results suggest that in rice OsNAC2 regulates both abiotic stress responses and ABA-mediated responses, and acts at the junction between the ABA and abiotic stress pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	stress	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	stress	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	We further confirmed that OsNAC2 directly binds the promoters of LATE EMBRYOGENESIS ABUNDANT 3 (OsLEA3) and Stress-Activated Protein Kinases 1 (OsSAPK1), two marker genes in the abiotic stress and ABA response pathways, respectively
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	stress	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	Our results suggest that in rice OsNAC2 regulates both abiotic stress responses and ABA-mediated responses, and acts at the junction between the ABA and abiotic stress pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	biotic stress	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	biotic stress	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	We further confirmed that OsNAC2 directly binds the promoters of LATE EMBRYOGENESIS ABUNDANT 3 (OsLEA3) and Stress-Activated Protein Kinases 1 (OsSAPK1), two marker genes in the abiotic stress and ABA response pathways, respectively
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	biotic stress	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	Our results suggest that in rice OsNAC2 regulates both abiotic stress responses and ABA-mediated responses, and acts at the junction between the ABA and abiotic stress pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	We further confirmed that OsNAC2 directly binds the promoters of LATE EMBRYOGENESIS ABUNDANT 3 (OsLEA3) and Stress-Activated Protein Kinases 1 (OsSAPK1), two marker genes in the abiotic stress and ABA response pathways, respectively
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	Our results suggest that in rice OsNAC2 regulates both abiotic stress responses and ABA-mediated responses, and acts at the junction between the ABA and abiotic stress pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	stress tolerance	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	stress response	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	Our results suggest that in rice OsNAC2 regulates both abiotic stress responses and ABA-mediated responses, and acts at the junction between the ABA and abiotic stress pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	protein kinase	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	We further confirmed that OsNAC2 directly binds the promoters of LATE EMBRYOGENESIS ABUNDANT 3 (OsLEA3) and Stress-Activated Protein Kinases 1 (OsSAPK1), two marker genes in the abiotic stress and ABA response pathways, respectively
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	leaf	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Overexpression of OsNAC2 dramatically accelerated leaf senescence, whereas its knockdown lines showed a delay in leaf senescence
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	leaf senescence	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Overexpression of OsNAC2 dramatically accelerated leaf senescence, whereas its knockdown lines showed a delay in leaf senescence
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	senescence	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Overexpression of OsNAC2 dramatically accelerated leaf senescence, whereas its knockdown lines showed a delay in leaf senescence
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	grain	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Additionally, reduced OsNAC2 expression leads to about 10% increase in the grain yield of RNAi lines
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	grain yield	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Additionally, reduced OsNAC2 expression leads to about 10% increase in the grain yield of RNAi lines
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	yield	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Additionally, reduced OsNAC2 expression leads to about 10% increase in the grain yield of RNAi lines
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Moreover, ectopic expression of OsNAC2 leads to an increase in ABA levels via directly upregulating expression of ABA biosynthetic genes (OsNCED3 and OsZEP1) as well as downregulating the ABA catabolic gene (OsABA8ox1)
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Interestingly, OsNAC2 is upregulated by a lower level of ABA but downregulated by a higher level of ABA, indicating a feedback repression of OsNAC2 by ABA
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Moreover, ectopic expression of OsNAC2 leads to an increase in ABA levels via directly upregulating expression of ABA biosynthetic genes (OsNCED3 and OsZEP1) as well as downregulating the ABA catabolic gene (OsABA8ox1)
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.	Interestingly, OsNAC2 is upregulated by a lower level of ABA but downregulated by a higher level of ABA, indicating a feedback repression of OsNAC2 by ABA
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	panicle	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	Overexpression of miR164b or down-regulation of OsNAC2 led to decreased panicle length and grain yield in the main panicle
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	grain	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	grain	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	Overexpression of miR164b or down-regulation of OsNAC2 led to decreased panicle length and grain yield in the main panicle
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	grain yield	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	grain yield	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	Overexpression of miR164b or down-regulation of OsNAC2 led to decreased panicle length and grain yield in the main panicle
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	yield	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	yield	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	Overexpression of miR164b or down-regulation of OsNAC2 led to decreased panicle length and grain yield in the main panicle
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	yield	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	In summary, we identified an efficient new strategy to substantially increase rice yield and improve plant architecture through over-expression of OsmiR164b-resistant OsNAC2
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	architecture	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	architecture	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	In summary, we identified an efficient new strategy to substantially increase rice yield and improve plant architecture through over-expression of OsmiR164b-resistant OsNAC2
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	plant architecture	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	plant architecture	Overexpression of OsmiR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	In summary, we identified an efficient new strategy to substantially increase rice yield and improve plant architecture through over-expression of OsmiR164b-resistant OsNAC2
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	seedlings	OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.	Additionally, OsNAC2 expression was enhanced in rice seedlings exposed to a high NaCl concentration
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	cell death	OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.	OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	PCD	OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.	Overall, our results suggest that OsNAC2 accelerates NaCl-induced PCD and provide new insights into the mechanisms affecting ROS accumulation, plant caspase-like activity, and K+efflux
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	root	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	root	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 predominantly expressed in primary root tips, crown roots and lateral root primordia, implying it influences root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	root	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	Thus, we describe that OsNAC2 functions as an upstream integrator of auxin and cytokinin signals that affect CRL and CDK production to regulate cell division during root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	auxin	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	auxin	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	Thus, we describe that OsNAC2 functions as an upstream integrator of auxin and cytokinin signals that affect CRL and CDK production to regulate cell division during root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	development	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 predominantly expressed in primary root tips, crown roots and lateral root primordia, implying it influences root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	development	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	Thus, we describe that OsNAC2 functions as an upstream integrator of auxin and cytokinin signals that affect CRL and CDK production to regulate cell division during root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	cell division	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	Thus, we describe that OsNAC2 functions as an upstream integrator of auxin and cytokinin signals that affect CRL and CDK production to regulate cell division during root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	root development	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	root development	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 predominantly expressed in primary root tips, crown roots and lateral root primordia, implying it influences root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	root development	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	Thus, we describe that OsNAC2 functions as an upstream integrator of auxin and cytokinin signals that affect CRL and CDK production to regulate cell division during root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	cytokinin	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	cytokinin	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	Thus, we describe that OsNAC2 functions as an upstream integrator of auxin and cytokinin signals that affect CRL and CDK production to regulate cell division during root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	iaa	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	Additionally, OsNAC2 can directly bind to the promoters of IAA inactivation-related genes (GH3
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	crown	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 predominantly expressed in primary root tips, crown roots and lateral root primordia, implying it influences root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	crown root	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 predominantly expressed in primary root tips, crown roots and lateral root primordia, implying it influences root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	lateral root	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 predominantly expressed in primary root tips, crown roots and lateral root primordia, implying it influences root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	primary root	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	OsNAC2 predominantly expressed in primary root tips, crown roots and lateral root primordia, implying it influences root development
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	IAA	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	Additionally, OsNAC2 can directly bind to the promoters of IAA inactivation-related genes (GH3
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	drought	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Overexpressing a microRNA (miR164b)-resistant OsNAC2 mutant gene, which generates transcripts that cannot be targeted by miR164b, improves rice plant architecture and yield; however, the performance of these mOsNAC2-overexpressing lines, named ZUOErN3 and ZUOErN4, under abiotic stress conditions such as drought have not yet been fully characterized
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	drought	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Taken together, our results show that OsNAC2 plays a positive regulatory role in drought and salt tolerance in rice through ABA-mediated pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	salt	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Taken together, our results show that OsNAC2 plays a positive regulatory role in drought and salt tolerance in rice through ABA-mediated pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	tolerance	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Taken together, our results show that OsNAC2 plays a positive regulatory role in drought and salt tolerance in rice through ABA-mediated pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	abiotic stress	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Overexpressing a microRNA (miR164b)-resistant OsNAC2 mutant gene, which generates transcripts that cannot be targeted by miR164b, improves rice plant architecture and yield; however, the performance of these mOsNAC2-overexpressing lines, named ZUOErN3 and ZUOErN4, under abiotic stress conditions such as drought have not yet been fully characterized
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	salt tolerance	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Taken together, our results show that OsNAC2 plays a positive regulatory role in drought and salt tolerance in rice through ABA-mediated pathways
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	stress	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Overexpressing a microRNA (miR164b)-resistant OsNAC2 mutant gene, which generates transcripts that cannot be targeted by miR164b, improves rice plant architecture and yield; however, the performance of these mOsNAC2-overexpressing lines, named ZUOErN3 and ZUOErN4, under abiotic stress conditions such as drought have not yet been fully characterized
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	architecture	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Overexpressing a microRNA (miR164b)-resistant OsNAC2 mutant gene, which generates transcripts that cannot be targeted by miR164b, improves rice plant architecture and yield; however, the performance of these mOsNAC2-overexpressing lines, named ZUOErN3 and ZUOErN4, under abiotic stress conditions such as drought have not yet been fully characterized
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	biotic stress	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Overexpressing a microRNA (miR164b)-resistant OsNAC2 mutant gene, which generates transcripts that cannot be targeted by miR164b, improves rice plant architecture and yield; however, the performance of these mOsNAC2-overexpressing lines, named ZUOErN3 and ZUOErN4, under abiotic stress conditions such as drought have not yet been fully characterized
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	plant architecture	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Overexpressing a microRNA (miR164b)-resistant OsNAC2 mutant gene, which generates transcripts that cannot be targeted by miR164b, improves rice plant architecture and yield; however, the performance of these mOsNAC2-overexpressing lines, named ZUOErN3 and ZUOErN4, under abiotic stress conditions such as drought have not yet been fully characterized
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	growth	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	Moreover, OsNAC2 delays the germination of seeds and coleoptile growth through the ABA pathway instead of the ethylene and GA pathway, by targeting the promoters of OsNCED3, OsZEP1, and OsABA8ox1
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	seedling	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	seedling	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	Further study proved that OsNAC2 directly activates the expressions of OsACO and OsACO3, enhancing ethylene synthesis, and then retards seedling establishment
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	seedling	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	We also found that OsNAC2 regulates downstream targets in a time-dependent manner by binding to the promoter of OsKO2 in the seedling period but not in the germination stage
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	Moreover, OsNAC2 delays the germination of seeds and coleoptile growth through the ABA pathway instead of the ethylene and GA pathway, by targeting the promoters of OsNCED3, OsZEP1, and OsABA8ox1
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ethylene	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	Further study proved that OsNAC2 directly activates the expressions of OsACO and OsACO3, enhancing ethylene synthesis, and then retards seedling establishment
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ethylene	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	Moreover, OsNAC2 delays the germination of seeds and coleoptile growth through the ABA pathway instead of the ethylene and GA pathway, by targeting the promoters of OsNCED3, OsZEP1, and OsABA8ox1
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ga	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	Moreover, OsNAC2 delays the germination of seeds and coleoptile growth through the ABA pathway instead of the ethylene and GA pathway, by targeting the promoters of OsNCED3, OsZEP1, and OsABA8ox1
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	ABA	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	Moreover, OsNAC2 delays the germination of seeds and coleoptile growth through the ABA pathway instead of the ethylene and GA pathway, by targeting the promoters of OsNCED3, OsZEP1, and OsABA8ox1
OsNAC2|OsTIL1|OMTN2|OsORE1	Os04g0460600	LOC_Os04g38720	GA	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling	Moreover, OsNAC2 delays the germination of seeds and coleoptile growth through the ABA pathway instead of the ethylene and GA pathway, by targeting the promoters of OsNCED3, OsZEP1, and OsABA8ox1
OsNAC3	Os07g0225300	LOC_Os07g12340	transcription factor	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.
OsNAC3	Os07g0225300	LOC_Os07g12340	root	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 Immunostaining showed that OsNAC3 was localized in all root cells
OsNAC3	Os07g0225300	LOC_Os07g12340	salt	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.
OsNAC3	Os07g0225300	LOC_Os07g12340	salt	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 RESULTS: In this study, we functionally characterized a rice NAC TF OsNAC3 for its involvement in ABA response and salt tolerance
OsNAC3	Os07g0225300	LOC_Os07g12340	salt	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 OsNAC3 knockout decreased rice plants&#39; sensitivity to ABA but increased salt stress sensitivity, while OsNAC3 overexpression showed an opposite effect
OsNAC3	Os07g0225300	LOC_Os07g12340	salt	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 Furthermore, qRT-PCR and transcriptomic analysis were performed to identify the key OsNAC3 regulated genes related to ABA response and salt tolerance, such as OsHKT1;4, OsHKT1;5, OsLEA3-1, OsPM-1, OsPP2C68, and OsRAB-21
OsNAC3	Os07g0225300	LOC_Os07g12340	salt	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 CONCLUSIONS: This study shows that rice OsNAC3 is an important regulatory factor in ABA signal response and salt tolerance
OsNAC3	Os07g0225300	LOC_Os07g12340	tolerance	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.
OsNAC3	Os07g0225300	LOC_Os07g12340	tolerance	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 RESULTS: In this study, we functionally characterized a rice NAC TF OsNAC3 for its involvement in ABA response and salt tolerance
OsNAC3	Os07g0225300	LOC_Os07g12340	tolerance	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 CONCLUSIONS: This study shows that rice OsNAC3 is an important regulatory factor in ABA signal response and salt tolerance
OsNAC3	Os07g0225300	LOC_Os07g12340	ABA	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.
OsNAC3	Os07g0225300	LOC_Os07g12340	ABA	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 RESULTS: In this study, we functionally characterized a rice NAC TF OsNAC3 for its involvement in ABA response and salt tolerance
OsNAC3	Os07g0225300	LOC_Os07g12340	ABA	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 ABA and NaCl treatment induced OsNAC3 expression in roots
OsNAC3	Os07g0225300	LOC_Os07g12340	ABA	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 OsNAC3 knockout decreased rice plants&#39; sensitivity to ABA but increased salt stress sensitivity, while OsNAC3 overexpression showed an opposite effect
OsNAC3	Os07g0225300	LOC_Os07g12340	ABA	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 Furthermore, qRT-PCR and transcriptomic analysis were performed to identify the key OsNAC3 regulated genes related to ABA response and salt tolerance, such as OsHKT1;4, OsHKT1;5, OsLEA3-1, OsPM-1, OsPP2C68, and OsRAB-21
OsNAC3	Os07g0225300	LOC_Os07g12340	ABA	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 CONCLUSIONS: This study shows that rice OsNAC3 is an important regulatory factor in ABA signal response and salt tolerance
OsNAC3	Os07g0225300	LOC_Os07g12340	salt tolerance	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.
OsNAC3	Os07g0225300	LOC_Os07g12340	salt tolerance	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 RESULTS: In this study, we functionally characterized a rice NAC TF OsNAC3 for its involvement in ABA response and salt tolerance
OsNAC3	Os07g0225300	LOC_Os07g12340	salt tolerance	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 Furthermore, qRT-PCR and transcriptomic analysis were performed to identify the key OsNAC3 regulated genes related to ABA response and salt tolerance, such as OsHKT1;4, OsHKT1;5, OsLEA3-1, OsPM-1, OsPP2C68, and OsRAB-21
OsNAC3	Os07g0225300	LOC_Os07g12340	salt tolerance	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 CONCLUSIONS: This study shows that rice OsNAC3 is an important regulatory factor in ABA signal response and salt tolerance
OsNAC3	Os07g0225300	LOC_Os07g12340	salt stress	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 OsNAC3 knockout decreased rice plants&#39; sensitivity to ABA but increased salt stress sensitivity, while OsNAC3 overexpression showed an opposite effect
OsNAC3	Os07g0225300	LOC_Os07g12340	stress	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 OsNAC3 knockout decreased rice plants&#39; sensitivity to ABA but increased salt stress sensitivity, while OsNAC3 overexpression showed an opposite effect
OsNAC3	Os07g0225300	LOC_Os07g12340	 ABA 	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.
OsNAC3	Os07g0225300	LOC_Os07g12340	 ABA 	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 RESULTS: In this study, we functionally characterized a rice NAC TF OsNAC3 for its involvement in ABA response and salt tolerance
OsNAC3	Os07g0225300	LOC_Os07g12340	 ABA 	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 ABA and NaCl treatment induced OsNAC3 expression in roots
OsNAC3	Os07g0225300	LOC_Os07g12340	 ABA 	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 OsNAC3 knockout decreased rice plants&#39; sensitivity to ABA but increased salt stress sensitivity, while OsNAC3 overexpression showed an opposite effect
OsNAC3	Os07g0225300	LOC_Os07g12340	 ABA 	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 Furthermore, qRT-PCR and transcriptomic analysis were performed to identify the key OsNAC3 regulated genes related to ABA response and salt tolerance, such as OsHKT1;4, OsHKT1;5, OsLEA3-1, OsPM-1, OsPP2C68, and OsRAB-21
OsNAC3	Os07g0225300	LOC_Os07g12340	 ABA 	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	 CONCLUSIONS: This study shows that rice OsNAC3 is an important regulatory factor in ABA signal response and salt tolerance
OsNAC4	Os01g0816100	LOC_Os01g60020	transcription factor	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4	We recently identified the OsNAC4 gene, which encodes a plant-specific transcription factor that exhibited rapid but transient transcriptional activation during the early stages of HR cell death
OsNAC4	Os01g0816100	LOC_Os01g60020	transcription factor	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4
OsNAC4	Os01g0816100	LOC_Os01g60020	transcription factor	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death	We report that overexpression of OsNAC4, which encodes a plant-specific transcription factor, leads to HR cell death accompanied by the loss of plasma membrane integrity, nuclear DNA fragmentation and typical morphological changes
OsNAC4	Os01g0816100	LOC_Os01g60020	transcription factor	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death	We report that overexpression of OsNAC4, which encodes a plant-specific transcription factor, leads to HR cell death accompanied by the loss of plasma membrane integrity, nuclear DNA fragmentation and typical morphological changes
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death	In OsNAC4 knock-down lines, HR cell death is markedly decreased in response to avirulent bacterial strains
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death	A microarray analysis showed that the expression of 139 genes including OsHSP90 and IREN, encoding a Ca(2+)-dependent nuclease, were different between the OsNAC4 knock-down line and control line during HR cell death
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4	We recently identified the OsNAC4 gene, which encodes a plant-specific transcription factor that exhibited rapid but transient transcriptional activation during the early stages of HR cell death
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4	Overexpression of OsNAC4 in rice plants induced cell death accompanied by all characteristics of HR cell death: DNA fragmentation, loss of plasma membrane integrity, and protein degradation
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4	In OsNAC4 RNAi knock-down lines exposed to an avirulent bacterial strain, the cellular response was characterized by a marked decrease in HR cell death compared to wild-type rice cells
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4	Here we report that although OsNAC4 overexpression caused rapid protein degradation during HR cell death, neither IREN nor OsHSP90 were involved
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4	Thus, three important processes that accompany HR cell death are regulated by independent signaling pathways that are collectively induced by OsNAC4
OsNAC4	Os01g0816100	LOC_Os01g60020	cell death	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4
OsNAC5	Os11g0184900	LOC_Os11g08210	abiotic stress	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress	To understand the functions of transcription factor OsNAC5 in response to abiotic stress, we generated transgenic rice plants with knockdown OsNAC5 by RNA-interfered (RNAi) and overexpressing OsNAC5, and investigated the effects of cold, drought and salt stress on wild-type (WT), RNAi and overexpression rice lines
OsNAC5	Os11g0184900	LOC_Os11g08210	abiotic stress	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress	These findings highlight the important role of OsNAC5 played in the tolerance of rice plants to abiotic stress by regulating downstream targets associated with accumulation of compatible solutes, Na(+) ions, H(2)O(2) and malondialdehyde
OsNAC5	Os11g0184900	LOC_Os11g08210	abiotic stress	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress
OsNAC5	Os11g0184900	LOC_Os11g08210	flower	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Both the RCc3:OsNAC5 and GOS2:OsNAC5 plants were found to have larger roots due to an enlarged stele and aerenchyma at flowering stage
OsNAC5	Os11g0184900	LOC_Os11g08210	salt	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress	To understand the functions of transcription factor OsNAC5 in response to abiotic stress, we generated transgenic rice plants with knockdown OsNAC5 by RNA-interfered (RNAi) and overexpressing OsNAC5, and investigated the effects of cold, drought and salt stress on wild-type (WT), RNAi and overexpression rice lines
OsNAC5	Os11g0184900	LOC_Os11g08210	grain	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Field evaluations over three growing seasons revealed that the grain yield of the RCc3:OsNAC5 and GOS2:OsNAC5 plants were increased by 9%-23% and 9%-26% under normal conditions, respectively
OsNAC5	Os11g0184900	LOC_Os11g08210	grain	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Under drought conditions, however, RCc3:OsNAC5 plants showed a significantly higher grain yield of 22%-63%, whilst the GOS2:OsNAC5 plants showed a reduced or similar yield to the nontransgenic (NT) controls
OsNAC5	Os11g0184900	LOC_Os11g08210	grain	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Our present findings demonstrate that the root-specific overexpression of OsNAC5 enlarges roots significantly and thereby enhances drought tolerance and grain yield under field conditions
OsNAC5	Os11g0184900	LOC_Os11g08210	grain	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field
OsNAC5	Os11g0184900	LOC_Os11g08210	drought tolerance	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	The root diameter was enlarged to a greater extent in the RCc3:OsNAC5, suggesting the importance of this phenotype for enhanced drought tolerance
OsNAC5	Os11g0184900	LOC_Os11g08210	drought tolerance	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Our present findings demonstrate that the root-specific overexpression of OsNAC5 enlarges roots significantly and thereby enhances drought tolerance and grain yield under field conditions
OsNAC5	Os11g0184900	LOC_Os11g08210	drought tolerance	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field
OsNAC5	Os11g0184900	LOC_Os11g08210	grain yield	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Field evaluations over three growing seasons revealed that the grain yield of the RCc3:OsNAC5 and GOS2:OsNAC5 plants were increased by 9%-23% and 9%-26% under normal conditions, respectively
OsNAC5	Os11g0184900	LOC_Os11g08210	grain yield	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Under drought conditions, however, RCc3:OsNAC5 plants showed a significantly higher grain yield of 22%-63%, whilst the GOS2:OsNAC5 plants showed a reduced or similar yield to the nontransgenic (NT) controls
OsNAC5	Os11g0184900	LOC_Os11g08210	grain yield	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Our present findings demonstrate that the root-specific overexpression of OsNAC5 enlarges roots significantly and thereby enhances drought tolerance and grain yield under field conditions
OsNAC5	Os11g0184900	LOC_Os11g08210	grain yield	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field
OsNAC5	Os11g0184900	LOC_Os11g08210	growth	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Of the genes specifically up-regulated in the RCc3:OsNAC5 roots, GLP, PDX, MERI5 and O-methyltransferase were implicated in root growth and development
OsNAC5	Os11g0184900	LOC_Os11g08210	transcription factor	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress	To understand the functions of transcription factor OsNAC5 in response to abiotic stress, we generated transgenic rice plants with knockdown OsNAC5 by RNA-interfered (RNAi) and overexpressing OsNAC5, and investigated the effects of cold, drought and salt stress on wild-type (WT), RNAi and overexpression rice lines
OsNAC5	Os11g0184900	LOC_Os11g08210	abiotic stress	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	Expression of OsNAC5 is induced by abiotic stresses such as drought, cold, high salinity, abscisic acid and methyl jasmonic acid
OsNAC5	Os11g0184900	LOC_Os11g08210	abiotic stress	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice
OsNAC5	Os11g0184900	LOC_Os11g08210	salinity	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	We show that OsNAC5 expression is up-regulated by natural (aging) and induced senescence processes (dark, ABA application, high salinity, cold and Fe-deficiency) and its expression is not affected in the presence of 6-benzylaminopurine (a senescence inhibitor) under dark-induced senescence
OsNAC5	Os11g0184900	LOC_Os11g08210	drought	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	Expression of OsNAC5 is induced by abiotic stresses such as drought, cold, high salinity, abscisic acid and methyl jasmonic acid
OsNAC5	Os11g0184900	LOC_Os11g08210	panicle	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	Using four different rice cultivars, we show that OsNAC5 up-regulation is higher and earlier in flag leaves and panicles of IR75862 plants, which have higher seed concentrations of Fe, Zn and protein
OsNAC5	Os11g0184900	LOC_Os11g08210	jasmonic	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	Expression of OsNAC5 is induced by abiotic stresses such as drought, cold, high salinity, abscisic acid and methyl jasmonic acid
OsNAC5	Os11g0184900	LOC_Os11g08210	seed	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	Using four different rice cultivars, we show that OsNAC5 up-regulation is higher and earlier in flag leaves and panicles of IR75862 plants, which have higher seed concentrations of Fe, Zn and protein
OsNAC5	Os11g0184900	LOC_Os11g08210	seed	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	We suggest that OsNAC5 is a novel senescence-associated ABA-dependent NAC transcription factor and its function could be related to Fe, Zn and amino acids remobilization from green tissues to seeds
OsNAC5	Os11g0184900	LOC_Os11g08210	transcription factor	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	The transcription factor OsNAC5 in rice is a member of the plant-specific NAC family that regulates stress responses
OsNAC5	Os11g0184900	LOC_Os11g08210	transcription factor	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice
OsNAC5	Os11g0184900	LOC_Os11g08210	salinity	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	Expression of OsNAC5 is induced by abiotic stresses such as drought, cold, high salinity, abscisic acid and methyl jasmonic acid
OsNAC5	Os11g0184900	LOC_Os11g08210	salinity	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	OsNAC5-overexpressing transgenic plants also had improved tolerance to high salinity compared to control plants
OsNAC5	Os11g0184900	LOC_Os11g08210	salt stress	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress	To understand the functions of transcription factor OsNAC5 in response to abiotic stress, we generated transgenic rice plants with knockdown OsNAC5 by RNA-interfered (RNAi) and overexpressing OsNAC5, and investigated the effects of cold, drought and salt stress on wild-type (WT), RNAi and overexpression rice lines
OsNAC5	Os11g0184900	LOC_Os11g08210	 ABA 	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	We show that OsNAC5 expression is up-regulated by natural (aging) and induced senescence processes (dark, ABA application, high salinity, cold and Fe-deficiency) and its expression is not affected in the presence of 6-benzylaminopurine (a senescence inhibitor) under dark-induced senescence
OsNAC5	Os11g0184900	LOC_Os11g08210	 ABA 	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	Salt induction of OsNAC5 expression is abolished by nicotinamide, an inhibitor of ABA effects
OsNAC5	Os11g0184900	LOC_Os11g08210	growth	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	Collectively, our results indicate that the stress-responsive proteins OsNAC5 and OsNAC6 are transcriptional activators that enhance stress tolerance by upregulating the expression of stress-inducible rice genes such as OsLEA3, although the effects of these proteins on growth are different
OsNAC5	Os11g0184900	LOC_Os11g08210	growth	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	Furthermore, because OsNAC5 overexpression did not retard growth, OsNAC5 may be a useful gene that can improve the stress tolerance of rice without affecting its growth
OsNAC5	Os11g0184900	LOC_Os11g08210	yield	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Field evaluations over three growing seasons revealed that the grain yield of the RCc3:OsNAC5 and GOS2:OsNAC5 plants were increased by 9%-23% and 9%-26% under normal conditions, respectively
OsNAC5	Os11g0184900	LOC_Os11g08210	yield	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Under drought conditions, however, RCc3:OsNAC5 plants showed a significantly higher grain yield of 22%-63%, whilst the GOS2:OsNAC5 plants showed a reduced or similar yield to the nontransgenic (NT) controls
OsNAC5	Os11g0184900	LOC_Os11g08210	yield	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Our present findings demonstrate that the root-specific overexpression of OsNAC5 enlarges roots significantly and thereby enhances drought tolerance and grain yield under field conditions
OsNAC5	Os11g0184900	LOC_Os11g08210	yield	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field
OsNAC5	Os11g0184900	LOC_Os11g08210	transcription factor	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	Differential expression of selected genes (encoding 7 transport proteins, the OsNAS3 enzyme and the OsNAC5 transcription factor) was confirmed by quantitative RT-PCR
OsNAC5	Os11g0184900	LOC_Os11g08210	transcription factor	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	We suggest that OsNAC5 is a novel senescence-associated ABA-dependent NAC transcription factor and its function could be related to Fe, Zn and amino acids remobilization from green tissues to seeds
OsNAC5	Os11g0184900	LOC_Os11g08210	transcription factor	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor
OsNAC5	Os11g0184900	LOC_Os11g08210	grain	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor
OsNAC5	Os11g0184900	LOC_Os11g08210	drought	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Under drought conditions, however, RCc3:OsNAC5 plants showed a significantly higher grain yield of 22%-63%, whilst the GOS2:OsNAC5 plants showed a reduced or similar yield to the nontransgenic (NT) controls
OsNAC5	Os11g0184900	LOC_Os11g08210	drought	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	The root diameter was enlarged to a greater extent in the RCc3:OsNAC5, suggesting the importance of this phenotype for enhanced drought tolerance
OsNAC5	Os11g0184900	LOC_Os11g08210	drought	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Our present findings demonstrate that the root-specific overexpression of OsNAC5 enlarges roots significantly and thereby enhances drought tolerance and grain yield under field conditions
OsNAC5	Os11g0184900	LOC_Os11g08210	drought	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field
OsNAC5	Os11g0184900	LOC_Os11g08210	drought	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress	To understand the functions of transcription factor OsNAC5 in response to abiotic stress, we generated transgenic rice plants with knockdown OsNAC5 by RNA-interfered (RNAi) and overexpressing OsNAC5, and investigated the effects of cold, drought and salt stress on wild-type (WT), RNAi and overexpression rice lines
OsNAC5	Os11g0184900	LOC_Os11g08210	oxidative	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress	In addition, knockdown and overexpression of OsNAC5 enhanced and reduced accumulation of malondialdehyde and H(2)O(2), suggesting that knockdown of OsNAC5 renders RNAi plants more susceptible to oxidative damage
OsNAC5	Os11g0184900	LOC_Os11g08210	grain filling	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor
OsNAC5	Os11g0184900	LOC_Os11g08210	senescence	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	We show that OsNAC5 expression is up-regulated by natural (aging) and induced senescence processes (dark, ABA application, high salinity, cold and Fe-deficiency) and its expression is not affected in the presence of 6-benzylaminopurine (a senescence inhibitor) under dark-induced senescence
OsNAC5	Os11g0184900	LOC_Os11g08210	senescence	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	We suggest that OsNAC5 is a novel senescence-associated ABA-dependent NAC transcription factor and its function could be related to Fe, Zn and amino acids remobilization from green tissues to seeds
OsNAC5	Os11g0184900	LOC_Os11g08210	jasmonic acid	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	Expression of OsNAC5 is induced by abiotic stresses such as drought, cold, high salinity, abscisic acid and methyl jasmonic acid
OsNAC5	Os11g0184900	LOC_Os11g08210	root	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Here, we report the results of field evaluations of transgenic rice plants overexpressing OsNAC5, under the control of either the root-specific (RCc3) or constitutive (GOS2) promoters
OsNAC5	Os11g0184900	LOC_Os11g08210	root	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Both the RCc3:OsNAC5 and GOS2:OsNAC5 plants were found to have larger roots due to an enlarged stele and aerenchyma at flowering stage
OsNAC5	Os11g0184900	LOC_Os11g08210	root	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	The root diameter was enlarged to a greater extent in the RCc3:OsNAC5, suggesting the importance of this phenotype for enhanced drought tolerance
OsNAC5	Os11g0184900	LOC_Os11g08210	root	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Also identified were 19 and 18 up-regulated genes that are specific to the RCc3:OsNAC5 and GOS2:OsNAC5 roots, respectively
OsNAC5	Os11g0184900	LOC_Os11g08210	root	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Of the genes specifically up-regulated in the RCc3:OsNAC5 roots, GLP, PDX, MERI5 and O-methyltransferase were implicated in root growth and development
OsNAC5	Os11g0184900	LOC_Os11g08210	root	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	Our present findings demonstrate that the root-specific overexpression of OsNAC5 enlarges roots significantly and thereby enhances drought tolerance and grain yield under field conditions
OsNAC5	Os11g0184900	LOC_Os11g08210	root	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field
OsNAC5	Os11g0184900	LOC_Os11g08210	salt	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	Salt induction of OsNAC5 expression is abolished by nicotinamide, an inhibitor of ABA effects
OsNAC5	Os11g0184900	LOC_Os11g08210	transcription factor	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Here, we report that the rice (Oryza sativa) gene CINNAMOYL-CoA REDUCTASE 10 (OsCCR10) is directly activated by the OsNAC5 transcription factor, which mediates drought tolerance through regulating lignin accumulation
OsNAC5	Os11g0184900	LOC_Os11g08210	drought	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Here, we report that the rice (Oryza sativa) gene CINNAMOYL-CoA REDUCTASE 10 (OsCCR10) is directly activated by the OsNAC5 transcription factor, which mediates drought tolerance through regulating lignin accumulation
OsNAC5	Os11g0184900	LOC_Os11g08210	tolerance	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Here, we report that the rice (Oryza sativa) gene CINNAMOYL-CoA REDUCTASE 10 (OsCCR10) is directly activated by the OsNAC5 transcription factor, which mediates drought tolerance through regulating lignin accumulation
OsNAC5	Os11g0184900	LOC_Os11g08210	drought tolerance	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Here, we report that the rice (Oryza sativa) gene CINNAMOYL-CoA REDUCTASE 10 (OsCCR10) is directly activated by the OsNAC5 transcription factor, which mediates drought tolerance through regulating lignin accumulation
OsNAC5	Os11g0184900	LOC_Os11g08210	lignin	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	 Here, we report that the rice (Oryza sativa) gene CINNAMOYL-CoA REDUCTASE 10 (OsCCR10) is directly activated by the OsNAC5 transcription factor, which mediates drought tolerance through regulating lignin accumulation
OsNAC5	Os11g0184900	LOC_Os11g08210	transcription factor	Enhanced expression of OsNAC5 leads to up-regulation of OsNAC6 and changes rice (Oryza sativa L.) ionome.	 Aiming a better understanding of the role of OsNAC5 in rice plants, we investigated a mutant line carrying a T-DNA insertion in the promoter of OsNAC5, which resulted in enhanced expression of the transcription factor
OsNAC5	Os11g0184900	LOC_Os11g08210	seedling	Enhanced expression of OsNAC5 leads to up-regulation of OsNAC6 and changes rice (Oryza sativa L.) ionome.	 Plants with OsNAC5 enhanced expression were shorter at the seedling stage and had reduced yield at maturity
OsNAC5	Os11g0184900	LOC_Os11g08210	yield	Enhanced expression of OsNAC5 leads to up-regulation of OsNAC6 and changes rice (Oryza sativa L.) ionome.	 Plants with OsNAC5 enhanced expression were shorter at the seedling stage and had reduced yield at maturity
OsNAC5	Os11g0184900	LOC_Os11g08210	Fe	Enhanced expression of OsNAC5 leads to up-regulation of OsNAC6 and changes rice (Oryza sativa L.) ionome.	 Ionomic analysis of leaves and seeds from the OsNAC5 enhanced expression line revealed lower Fe and Zn concentrations in leaves and higher Fe concentrations in seeds than in WT plants, further suggesting that OsNAC5 may be involved in regulating the ionome in rice plants
OsNAC52	Os05g0421600	LOC_Os05g34830	seedlings	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Transgenic plants over-expressing OsNAC52 were highly sensitive to ABA (Abscisic acid), and the growth of the 35S-OsNAC52 transgenic seedlings was significantly more restrained by ABA treatment than those of the wild-type seedlings
OsNAC52	Os05g0421600	LOC_Os05g34830	growth	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Transgenic plants over-expressing OsNAC52 were highly sensitive to ABA (Abscisic acid), and the growth of the 35S-OsNAC52 transgenic seedlings was significantly more restrained by ABA treatment than those of the wild-type seedlings
OsNAC52	Os05g0421600	LOC_Os05g34830	growth	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Furthermore, over-expression of OsNAC52 activated the expression of downstream genes in transgenic Arabidopsis, resulting in enhanced tolerance to drought stresses but not growth retardation
OsNAC52	Os05g0421600	LOC_Os05g34830	drought	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Furthermore, over-expression of OsNAC52 activated the expression of downstream genes in transgenic Arabidopsis, resulting in enhanced tolerance to drought stresses but not growth retardation
OsNAC52	Os05g0421600	LOC_Os05g34830	tolerance	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Furthermore, over-expression of OsNAC52 activated the expression of downstream genes in transgenic Arabidopsis, resulting in enhanced tolerance to drought stresses but not growth retardation
OsNAC52	Os05g0421600	LOC_Os05g34830	tolerance	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	The results from this study indicate that this novel rice OsNAC52 gene functions as an important transcriptional activator in ABA-inducible gene expression and may be useful in improving plant tolerance to abiotic stress
OsNAC52	Os05g0421600	LOC_Os05g34830	abiotic stress	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	The results from this study indicate that this novel rice OsNAC52 gene functions as an important transcriptional activator in ABA-inducible gene expression and may be useful in improving plant tolerance to abiotic stress
OsNAC52	Os05g0421600	LOC_Os05g34830	ABA	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Transgenic plants over-expressing OsNAC52 were highly sensitive to ABA (Abscisic acid), and the growth of the 35S-OsNAC52 transgenic seedlings was significantly more restrained by ABA treatment than those of the wild-type seedlings
OsNAC52	Os05g0421600	LOC_Os05g34830	stress	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	The results from this study indicate that this novel rice OsNAC52 gene functions as an important transcriptional activator in ABA-inducible gene expression and may be useful in improving plant tolerance to abiotic stress
OsNAC52	Os05g0421600	LOC_Os05g34830	biotic stress	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	The results from this study indicate that this novel rice OsNAC52 gene functions as an important transcriptional activator in ABA-inducible gene expression and may be useful in improving plant tolerance to abiotic stress
OsNAC52	Os05g0421600	LOC_Os05g34830	drought stress	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Furthermore, over-expression of OsNAC52 activated the expression of downstream genes in transgenic Arabidopsis, resulting in enhanced tolerance to drought stresses but not growth retardation
OsNAC52	Os05g0421600	LOC_Os05g34830	transcriptional activator	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	The results from this study indicate that this novel rice OsNAC52 gene functions as an important transcriptional activator in ABA-inducible gene expression and may be useful in improving plant tolerance to abiotic stress
OsNAC52	Os05g0421600	LOC_Os05g34830	ABA	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Transgenic plants over-expressing OsNAC52 were highly sensitive to ABA (Abscisic acid), and the growth of the 35S-OsNAC52 transgenic seedlings was significantly more restrained by ABA treatment than those of the wild-type seedlings
OsNAC52	Os05g0421600	LOC_Os05g34830	abscisic acid	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Transgenic plants over-expressing OsNAC52 were highly sensitive to ABA (Abscisic acid), and the growth of the 35S-OsNAC52 transgenic seedlings was significantly more restrained by ABA treatment than those of the wild-type seedlings
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	biotic stress	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice	Our results imply that OsNAC6, besides having a role in plant adaptation to abiotic stresses, also integrates signals derived from both abiotic and biotic stresses
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	yield	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Transgenic rice plants over-expressing OsNAC6 constitutively exhibited growth retardation and low reproductive yields
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	seedling	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The root phenotype of OsNAC6 knock-out seedlings was observed to be similar to that of the OsHDAC1(OE) seedlings
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	seedling	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	Conversely, the root phenotype of the OsNAC6 overexpressors was similar to that of the OsHDAC1 knock-out seedlings
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	seedling	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	These observations indicate that OsHDAC1 negatively regulates the OsNAC6 gene that primarily mediates the alteration in the root growth of the OsHDAC1(OE) seedlings
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	seedling	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	jasmonic acid	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice	OsNAC6 was also induced by jasmonic acid (JA), a plant hormone that activates defense responses against herbivores and pathogens
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	salinity	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Expression of OsNAC6 is induced by abiotic stresses, including cold, drought and high salinity
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	growth	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	The growth of these plants was similar to that of control plants, whereas the growth of OsNAC6-overexpressing transgenic plants was retarded
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	growth	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice	Collectively, our results indicate that the stress-responsive proteins OsNAC5 and OsNAC6 are transcriptional activators that enhance stress tolerance by upregulating the expression of stress-inducible rice genes such as OsLEA3, although the effects of these proteins on growth are different
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	transcription factor	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice	These data suggest SNAC2 is a novel stress responsive NAC transcription factor that possesses potential utility in improving stress tolerance of rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	transcription factor	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	reproductive	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Transgenic rice plants over-expressing OsNAC6 constitutively exhibited growth retardation and low reproductive yields
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	salinity	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice	Northern blot and SNAC2 promoter activity analyses suggest that SNAC2 gene was induced by drought, salinity, cold, wounding, and abscisic acid (ABA) treatment
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	salt	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice	Here we show that OsNAC6 is induced by cold, salt, drought and abscisic acid (ABA)
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	defense response	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice	OsNAC6 was also induced by jasmonic acid (JA), a plant hormone that activates defense responses against herbivores and pathogens
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	growth	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Transgenic rice plants over-expressing OsNAC6 constitutively exhibited growth retardation and low reproductive yields
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	growth	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	By utilizing stress-inducible promoters, such as the OsNAC6 promoter, it is hoped that stress-inducible over-expression of OsNAC6 in rice can improve stress tolerance by suppressing the negative effects of OsNAC6 on growth under normal growth conditions
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice	Northern blot and SNAC2 promoter activity analyses suggest that SNAC2 gene was induced by drought, salinity, cold, wounding, and abscisic acid (ABA) treatment
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	disease	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	OsNAC6 gene expression is also induced by wounding and blast disease
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	transcription factor	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	The OsNAC6 gene is a member of the NAC transcription factor gene family in rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	transcription factor	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	blast disease	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	OsNAC6 gene expression is also induced by wounding and blast disease
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	salt tolerance	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	defense	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice	OsNAC6 was also induced by jasmonic acid (JA), a plant hormone that activates defense responses against herbivores and pathogens
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	abiotic stress	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Expression of OsNAC6 is induced by abiotic stresses, including cold, drought and high salinity
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	jasmonic	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice	OsNAC6 was also induced by jasmonic acid (JA), a plant hormone that activates defense responses against herbivores and pathogens
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice	Here we show that OsNAC6 is induced by cold, salt, drought and abscisic acid (ABA)
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The root phenotype of OsNAC6 knock-out seedlings was observed to be similar to that of the OsHDAC1(OE) seedlings
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	Conversely, the root phenotype of the OsNAC6 overexpressors was similar to that of the OsHDAC1 knock-out seedlings
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	These observations indicate that OsHDAC1 negatively regulates the OsNAC6 gene that primarily mediates the alteration in the root growth of the OsHDAC1(OE) seedlings
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	root	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	biotic stress	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Expression of OsNAC6 is induced by abiotic stresses, including cold, drought and high salinity
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	biotic stress	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	The results of microarray analysis revealed that many genes that are inducible by abiotic and biotic stresses were upregulated in rice plants over-expressing OsNAC6
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	biotic stress	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Collectively, these results indicate that OsNAC6 functions as a transcriptional activator in response to abiotic and biotic stresses in plants
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	biotic stress	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	growth	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	These observations indicate that OsHDAC1 negatively regulates the OsNAC6 gene that primarily mediates the alteration in the root growth of the OsHDAC1(OE) seedlings
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	growth	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice	The histone deacetylase OsHDAC1 epigenetically regulates theOsNAC6gene that controls seedling root growth in rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	salt	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	blast	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	OsNAC6 gene expression is also induced by wounding and blast disease
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	abiotic stress	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice	Our results imply that OsNAC6, besides having a role in plant adaptation to abiotic stresses, also integrates signals derived from both abiotic and biotic stresses
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice	Expression of OsNAC6 is induced by abiotic stresses, including cold, drought and high salinity
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	root	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	grain	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Multiyear drought field tests demonstrated that the grain yield of OsNAC6 root-specific overexpressing transgenic rice lines was less affected by drought stress than were non-transgenic controls
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	development	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Collectively, OsNAC6 orchestrates novel molecular drought tolerance mechanisms and has potential for the biotechnological development of high-yielding crops under water limiting conditions
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Multiyear drought field tests demonstrated that the grain yield of OsNAC6 root-specific overexpressing transgenic rice lines was less affected by drought stress than were non-transgenic controls
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Genome-wide analyses of loss- and gain-of-function mutants revealed that OsNAC6 up-regulates the expression of direct target genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, 3'-phophoadenosine 5'-phosphosulfate accumulation, and glycosylation, which represent multiple drought tolerance pathways
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Collectively, OsNAC6 orchestrates novel molecular drought tolerance mechanisms and has potential for the biotechnological development of high-yielding crops under water limiting conditions
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	tolerance	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Genome-wide analyses of loss- and gain-of-function mutants revealed that OsNAC6 up-regulates the expression of direct target genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, 3'-phophoadenosine 5'-phosphosulfate accumulation, and glycosylation, which represent multiple drought tolerance pathways
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	tolerance	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Collectively, OsNAC6 orchestrates novel molecular drought tolerance mechanisms and has potential for the biotechnological development of high-yielding crops under water limiting conditions
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	transcription factor	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	grain yield	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Multiyear drought field tests demonstrated that the grain yield of OsNAC6 root-specific overexpressing transgenic rice lines was less affected by drought stress than were non-transgenic controls
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	yield	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Multiyear drought field tests demonstrated that the grain yield of OsNAC6 root-specific overexpressing transgenic rice lines was less affected by drought stress than were non-transgenic controls
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought tolerance	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought tolerance	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Genome-wide analyses of loss- and gain-of-function mutants revealed that OsNAC6 up-regulates the expression of direct target genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, 3'-phophoadenosine 5'-phosphosulfate accumulation, and glycosylation, which represent multiple drought tolerance pathways
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought tolerance	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Collectively, OsNAC6 orchestrates novel molecular drought tolerance mechanisms and has potential for the biotechnological development of high-yielding crops under water limiting conditions
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	stress	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Multiyear drought field tests demonstrated that the grain yield of OsNAC6 root-specific overexpressing transgenic rice lines was less affected by drought stress than were non-transgenic controls
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought stress	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Multiyear drought field tests demonstrated that the grain yield of OsNAC6 root-specific overexpressing transgenic rice lines was less affected by drought stress than were non-transgenic controls
OsNAC6|SNAC2	Os01g0884300	LOC_Os01g66120	drought stress	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Multiyear drought field tests demonstrated that the grain yield of OsNAC6 root-specific overexpressing transgenic rice lines was less affected by drought stress than were non-transgenic controls
OsNAC78|OsNTL6	Os02g0822400	LOC_Os02g57650	transcription factor	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 interacts with the NAC (NAM, ATAF, and CUC) transcription factor OsNTL6 at the ER
OsNAC78|OsNTL6	Os02g0822400	LOC_Os02g57650	resistance	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsNAC78|OsNTL6	Os02g0822400	LOC_Os02g57650	disease	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsNAC78|OsNTL6	Os02g0822400	LOC_Os02g57650	disease resistance	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsNAC78|OsNTL6	Os02g0822400	LOC_Os02g57650	stress	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsNAC78|OsNTL6	Os02g0822400	LOC_Os02g57650	nucleus	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsNTL6 localizes to the ER and is relocated to the nucleus after cleavage of the transmembrane domain
OsNAC78|OsNTL6	Os02g0822400	LOC_Os02g57650	ER stress	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	 OsHLP1 suppresses OsNTL6 protein accumulation, whereas OsNTL6 counteracts OsHLP1 by alleviating sensitivity to ER stress and decreasing disease resistance in OsHLP1 overexpression plants
OsNADH-GOGAT1|OsGOGAT1	Os01g0681900|Os01g0682001	LOC_Os01g48960	nitrogen	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.
OsNADH-GOGAT1|OsGOGAT1	Os01g0681900|Os01g0682001	LOC_Os01g48960	nitrogen	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	Combining OsAMT1;2 and OsGOGAT1 activation then provides a good breeding strategy for improving plant growth, nitrogen use efficiency and grain productivity especially under nitrogen limitation through the increment of both nitrogen uptake and assimilation
OsNADH-GOGAT1|OsGOGAT1	Os01g0681900|Os01g0682001	LOC_Os01g48960	grain	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	We show that the double activation of OsAMT1;2 and OsGOGAT1 increases plant performance in agriculture, providing better N grain filling without yield penalty under paddy field conditions, and better grain yield and N content when plants are grown under N-limiting in field conditions
OsNADH-GOGAT1|OsGOGAT1	Os01g0681900|Os01g0682001	LOC_Os01g48960	grain	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	Combining OsAMT1;2 and OsGOGAT1 activation then provides a good breeding strategy for improving plant growth, nitrogen use efficiency and grain productivity especially under nitrogen limitation through the increment of both nitrogen uptake and assimilation
OsNADH-GOGAT1|OsGOGAT1	Os01g0681900|Os01g0682001	LOC_Os01g48960	grain yield	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	We show that the double activation of OsAMT1;2 and OsGOGAT1 increases plant performance in agriculture, providing better N grain filling without yield penalty under paddy field conditions, and better grain yield and N content when plants are grown under N-limiting in field conditions
OsNADH-GOGAT1|OsGOGAT1	Os01g0681900|Os01g0682001	LOC_Os01g48960	yield	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	We show that the double activation of OsAMT1;2 and OsGOGAT1 increases plant performance in agriculture, providing better N grain filling without yield penalty under paddy field conditions, and better grain yield and N content when plants are grown under N-limiting in field conditions
OsNADH-GOGAT1|OsGOGAT1	Os01g0681900|Os01g0682001	LOC_Os01g48960	plant growth	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	Combining OsAMT1;2 and OsGOGAT1 activation then provides a good breeding strategy for improving plant growth, nitrogen use efficiency and grain productivity especially under nitrogen limitation through the increment of both nitrogen uptake and assimilation
OsNADH-GOGAT1|OsGOGAT1	Os01g0681900|Os01g0682001	LOC_Os01g48960	breeding	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	Combining OsAMT1;2 and OsGOGAT1 activation then provides a good breeding strategy for improving plant growth, nitrogen use efficiency and grain productivity especially under nitrogen limitation through the increment of both nitrogen uptake and assimilation
OsNADH-GOGAT1|OsGOGAT1	Os01g0681900|Os01g0682001	LOC_Os01g48960	grain filling	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	We show that the double activation of OsAMT1;2 and OsGOGAT1 increases plant performance in agriculture, providing better N grain filling without yield penalty under paddy field conditions, and better grain yield and N content when plants are grown under N-limiting in field conditions
OsNADH-GOGAT2	Os05g0555600	LOC_Os05g48200	spikelet number	Disruption of a Novel NADH-Glutamate Synthase2 Gene Caused Marked Reduction in Spikelet Number of Rice	In rice grown under paddy field conditions, disruption of the OsNADH-GOGAT2 gene caused a remarkable decrease in spikelet number per panicle associated with a reductions in yield and whole plant biomass, when compared with wild-type (WT) plants
OsNADH-GOGAT2	Os05g0555600	LOC_Os05g48200	yield	Disruption of a Novel NADH-Glutamate Synthase2 Gene Caused Marked Reduction in Spikelet Number of Rice	In rice grown under paddy field conditions, disruption of the OsNADH-GOGAT2 gene caused a remarkable decrease in spikelet number per panicle associated with a reductions in yield and whole plant biomass, when compared with wild-type (WT) plants
OsNADH-GOGAT2	Os05g0555600	LOC_Os05g48200	spikelet	Disruption of a Novel NADH-Glutamate Synthase2 Gene Caused Marked Reduction in Spikelet Number of Rice	In rice grown under paddy field conditions, disruption of the OsNADH-GOGAT2 gene caused a remarkable decrease in spikelet number per panicle associated with a reductions in yield and whole plant biomass, when compared with wild-type (WT) plants
OsNADH-GOGAT2	Os05g0555600	LOC_Os05g48200	panicle	Disruption of a Novel NADH-Glutamate Synthase2 Gene Caused Marked Reduction in Spikelet Number of Rice	In rice grown under paddy field conditions, disruption of the OsNADH-GOGAT2 gene caused a remarkable decrease in spikelet number per panicle associated with a reductions in yield and whole plant biomass, when compared with wild-type (WT) plants
OsNADH-GOGAT2	Os05g0555600	LOC_Os05g48200	sheath	Disruption of a Novel NADH-Glutamate Synthase2 Gene Caused Marked Reduction in Spikelet Number of Rice	OsNADH-GOGAT2, a newly identified gene, was expressed mainly in fully expanded leaf blades and leaf sheaths
OsNADH-GOGAT2	Os05g0555600	LOC_Os05g48200	biomass	Disruption of a Novel NADH-Glutamate Synthase2 Gene Caused Marked Reduction in Spikelet Number of Rice	In rice grown under paddy field conditions, disruption of the OsNADH-GOGAT2 gene caused a remarkable decrease in spikelet number per panicle associated with a reductions in yield and whole plant biomass, when compared with wild-type (WT) plants
OsNADH-GOGAT2	Os05g0555600	LOC_Os05g48200	leaf	Disruption of a Novel NADH-Glutamate Synthase2 Gene Caused Marked Reduction in Spikelet Number of Rice	OsNADH-GOGAT2, a newly identified gene, was expressed mainly in fully expanded leaf blades and leaf sheaths
OsNADK1	Os01g0957000	LOC_Os01g72690	transcription factor	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	, OsWRKY21 and OsWRKY42, showed correlated co-expression patterns with OsNADK1 in osnadk1 and the plants overexpressing or underexpressing OsNADK1, implying roles for these transcription factors in OsNADK1-mediated processes
OsNADK1	Os01g0957000	LOC_Os01g72690	growth	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	Moreover, certain stress-related genes showed differential expression patterns in osnadk1 under both normal growth and drought-stress conditions compared with WT
OsNADK1	Os01g0957000	LOC_Os01g72690	drought	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	Compared with wild-type (WT) rice, the mutant plant osnadk1 in which OsNADK1 was knocked out was a dwarf at the heading stage and had decreased NADP(H)/NAD(H), ascorbic acid (ASA)/dehydroascorbate (DHA) and reduced glutathione (GSH)/oxidized glutathione (GSSG) ratios, which led to increased oxidation states in the rice cells and sensitivity to drought
OsNADK1	Os01g0957000	LOC_Os01g72690	drought	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	In addition, overexpression of OsNADK1 enhanced the drought tolerance of rice plants, whereas loss of function of the gene reduced the tolerance
OsNADK1	Os01g0957000	LOC_Os01g72690	tolerance	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.
OsNADK1	Os01g0957000	LOC_Os01g72690	tolerance	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	In addition, overexpression of OsNADK1 enhanced the drought tolerance of rice plants, whereas loss of function of the gene reduced the tolerance
OsNADK1	Os01g0957000	LOC_Os01g72690	drought tolerance	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	In addition, overexpression of OsNADK1 enhanced the drought tolerance of rice plants, whereas loss of function of the gene reduced the tolerance
OsNADK1	Os01g0957000	LOC_Os01g72690	dwarf	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	Compared with wild-type (WT) rice, the mutant plant osnadk1 in which OsNADK1 was knocked out was a dwarf at the heading stage and had decreased NADP(H)/NAD(H), ascorbic acid (ASA)/dehydroascorbate (DHA) and reduced glutathione (GSH)/oxidized glutathione (GSSG) ratios, which led to increased oxidation states in the rice cells and sensitivity to drought
OsNADK1	Os01g0957000	LOC_Os01g72690	Kinase	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.
OsNADK1	Os01g0957000	LOC_Os01g72690	kinase	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	The NAD kinase OsNADK1 affects the intracellular redox balance and enhances the tolerance of rice to drought.
OsNAGK1|NAGK1	Os04g0550500	LOC_Os04g46460	chloroplast	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Transient expression of OsGlnB cDNA or OsNAGK1 cDNA fused with sGFP in rice leaf blades strongly suggested that the PII-like protein as well as OsNAGK1 protein is located in chloroplasts
OsNAGK1|NAGK1	Os04g0550500	LOC_Os04g46460	root	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Both OsGlnB and OsNAGK1 genes were expressed in roots, leaf blades, leaf sheaths and spikelets of rice, and these two genes were coordinately expressed in leaf blades during the life span
OsNAGK1|NAGK1	Os04g0550500	LOC_Os04g46460	spikelet	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Both OsGlnB and OsNAGK1 genes were expressed in roots, leaf blades, leaf sheaths and spikelets of rice, and these two genes were coordinately expressed in leaf blades during the life span
OsNAGK1|NAGK1	Os04g0550500	LOC_Os04g46460	leaf	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Transient expression of OsGlnB cDNA or OsNAGK1 cDNA fused with sGFP in rice leaf blades strongly suggested that the PII-like protein as well as OsNAGK1 protein is located in chloroplasts
OsNAGK1|NAGK1	Os04g0550500	LOC_Os04g46460	leaf	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Both OsGlnB and OsNAGK1 genes were expressed in roots, leaf blades, leaf sheaths and spikelets of rice, and these two genes were coordinately expressed in leaf blades during the life span
OsNAGK1|NAGK1	Os04g0550500	LOC_Os04g46460	sheath	Interaction of N-acetylglutamate kinase with a PII-like protein in rice	Both OsGlnB and OsNAGK1 genes were expressed in roots, leaf blades, leaf sheaths and spikelets of rice, and these two genes were coordinately expressed in leaf blades during the life span
OsNAP	Os03g0327800	LOC_Os03g21060	grain	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	OsNAP-overexpressing transgenic plants displayed an accelerated leaf senescence phenotype at the grain-filling stage, which might be caused by the elevated JA levels and the increased expression of the JA biosynthesis-related genes LOX2 and AOC1, and showed enhanced tolerance ability to MeJA treatment at the seedling stage
OsNAP	Os03g0327800	LOC_Os03g21060	ABA	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Analysis of the OsNAP transcript levels in rice showed that this gene was significantly induced by ABA and abiotic stresses, including high salinity, drought and low temperature
OsNAP	Os03g0327800	LOC_Os03g21060	ABA	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway
OsNAP	Os03g0327800	LOC_Os03g21060	senescence	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	RESULTS: In this study, we reported a member of the NAC transcription factor family named OsNAP whose expression is associated with leaf senescence, and investigated its preliminary function during the process of leaf senescence
OsNAP	Os03g0327800	LOC_Os03g21060	senescence	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	The results of qRT-PCR showed that the OsNAP transcripts were accumulated gradually in response to leaf senescence and treatment with methyl jasmonic acid (MeJA)
OsNAP	Os03g0327800	LOC_Os03g21060	senescence	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	OsNAP-overexpressing transgenic plants displayed an accelerated leaf senescence phenotype at the grain-filling stage, which might be caused by the elevated JA levels and the increased expression of the JA biosynthesis-related genes LOX2 and AOC1, and showed enhanced tolerance ability to MeJA treatment at the seedling stage
OsNAP	Os03g0327800	LOC_Os03g21060	senescence	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	Nevertheless, the leaf senescence process was delayed in OsNAP RNAi transgenic plants with a dramatic drop in JA levels and with decreased expression levels of the JA biosynthesis-related genes AOS2, AOC1 and OPR7
OsNAP	Os03g0327800	LOC_Os03g21060	senescence	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	CONCLUSIONS: These results suggest that OsNAP acts as a positive regulator of leaf senescence and this regulation may occur via the JA pathway
OsNAP	Os03g0327800	LOC_Os03g21060	ja	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	OsNAP-overexpressing transgenic plants displayed an accelerated leaf senescence phenotype at the grain-filling stage, which might be caused by the elevated JA levels and the increased expression of the JA biosynthesis-related genes LOX2 and AOC1, and showed enhanced tolerance ability to MeJA treatment at the seedling stage
OsNAP	Os03g0327800	LOC_Os03g21060	ja	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	Nevertheless, the leaf senescence process was delayed in OsNAP RNAi transgenic plants with a dramatic drop in JA levels and with decreased expression levels of the JA biosynthesis-related genes AOS2, AOC1 and OPR7
OsNAP	Os03g0327800	LOC_Os03g21060	ja	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	CONCLUSIONS: These results suggest that OsNAP acts as a positive regulator of leaf senescence and this regulation may occur via the JA pathway
OsNAP	Os03g0327800	LOC_Os03g21060	yield	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Rice plants overexpressing OsNAP did not show growth retardation, but showed a significantly reduced rate of water loss, enhanced tolerance to high salinity, drought and low temperature at the vegetative stage, and improved yield under drought stress at the flowering stage
OsNAP	Os03g0327800	LOC_Os03g21060	flower	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Rice plants overexpressing OsNAP did not show growth retardation, but showed a significantly reduced rate of water loss, enhanced tolerance to high salinity, drought and low temperature at the vegetative stage, and improved yield under drought stress at the flowering stage
OsNAP	Os03g0327800	LOC_Os03g21060	abiotic stress	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Analysis of the OsNAP transcript levels in rice showed that this gene was significantly induced by ABA and abiotic stresses, including high salinity, drought and low temperature
OsNAP	Os03g0327800	LOC_Os03g21060	abiotic stress	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Our data suggest that OsNAP functions as a transcriptional activator that plays a role in mediating abiotic stress responses in rice
OsNAP	Os03g0327800	LOC_Os03g21060	abiotic stress	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway
OsNAP	Os03g0327800	LOC_Os03g21060	transcription factor	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	OsNAP is a member of the NAC transcription factor family; it is localized in the nucleus, and shows transcriptional activator activity in yeast
OsNAP	Os03g0327800	LOC_Os03g21060	transcription factor	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Microarray analysis of transgenic plants overexpressing OsNAP revealed that many stress-related genes were up-regulated, including OsPP2C06/OsABI2, OsPP2C09, OsPP2C68 and OsSalT, and some genes coding for stress-related transcription factors (OsDREB1A, OsMYB2, OsAP37 and OsAP59)
OsNAP	Os03g0327800	LOC_Os03g21060	transcription factor	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway
OsNAP	Os03g0327800	LOC_Os03g21060	transcription factor	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	RESULTS: In this study, we reported a member of the NAC transcription factor family named OsNAP whose expression is associated with leaf senescence, and investigated its preliminary function during the process of leaf senescence
OsNAP	Os03g0327800	LOC_Os03g21060	leaf	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	RESULTS: In this study, we reported a member of the NAC transcription factor family named OsNAP whose expression is associated with leaf senescence, and investigated its preliminary function during the process of leaf senescence
OsNAP	Os03g0327800	LOC_Os03g21060	leaf	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	The results of qRT-PCR showed that the OsNAP transcripts were accumulated gradually in response to leaf senescence and treatment with methyl jasmonic acid (MeJA)
OsNAP	Os03g0327800	LOC_Os03g21060	leaf	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	OsNAP-overexpressing transgenic plants displayed an accelerated leaf senescence phenotype at the grain-filling stage, which might be caused by the elevated JA levels and the increased expression of the JA biosynthesis-related genes LOX2 and AOC1, and showed enhanced tolerance ability to MeJA treatment at the seedling stage
OsNAP	Os03g0327800	LOC_Os03g21060	leaf	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	Nevertheless, the leaf senescence process was delayed in OsNAP RNAi transgenic plants with a dramatic drop in JA levels and with decreased expression levels of the JA biosynthesis-related genes AOS2, AOC1 and OPR7
OsNAP	Os03g0327800	LOC_Os03g21060	leaf	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	CONCLUSIONS: These results suggest that OsNAP acts as a positive regulator of leaf senescence and this regulation may occur via the JA pathway
OsNAP	Os03g0327800	LOC_Os03g21060	salinity	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Analysis of the OsNAP transcript levels in rice showed that this gene was significantly induced by ABA and abiotic stresses, including high salinity, drought and low temperature
OsNAP	Os03g0327800	LOC_Os03g21060	salinity	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Rice plants overexpressing OsNAP did not show growth retardation, but showed a significantly reduced rate of water loss, enhanced tolerance to high salinity, drought and low temperature at the vegetative stage, and improved yield under drought stress at the flowering stage
OsNAP	Os03g0327800	LOC_Os03g21060	drought	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Analysis of the OsNAP transcript levels in rice showed that this gene was significantly induced by ABA and abiotic stresses, including high salinity, drought and low temperature
OsNAP	Os03g0327800	LOC_Os03g21060	drought	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Rice plants overexpressing OsNAP did not show growth retardation, but showed a significantly reduced rate of water loss, enhanced tolerance to high salinity, drought and low temperature at the vegetative stage, and improved yield under drought stress at the flowering stage
OsNAP	Os03g0327800	LOC_Os03g21060	seedling	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	OsNAP-overexpressing transgenic plants displayed an accelerated leaf senescence phenotype at the grain-filling stage, which might be caused by the elevated JA levels and the increased expression of the JA biosynthesis-related genes LOX2 and AOC1, and showed enhanced tolerance ability to MeJA treatment at the seedling stage
OsNAP	Os03g0327800	LOC_Os03g21060	jasmonic	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	The results of qRT-PCR showed that the OsNAP transcripts were accumulated gradually in response to leaf senescence and treatment with methyl jasmonic acid (MeJA)
OsNAP	Os03g0327800	LOC_Os03g21060	temperature	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Analysis of the OsNAP transcript levels in rice showed that this gene was significantly induced by ABA and abiotic stresses, including high salinity, drought and low temperature
OsNAP	Os03g0327800	LOC_Os03g21060	temperature	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Rice plants overexpressing OsNAP did not show growth retardation, but showed a significantly reduced rate of water loss, enhanced tolerance to high salinity, drought and low temperature at the vegetative stage, and improved yield under drought stress at the flowering stage
OsNAP	Os03g0327800	LOC_Os03g21060	growth	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Rice plants overexpressing OsNAP did not show growth retardation, but showed a significantly reduced rate of water loss, enhanced tolerance to high salinity, drought and low temperature at the vegetative stage, and improved yield under drought stress at the flowering stage
OsNAP	Os03g0327800	LOC_Os03g21060	jasmonic acid	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence	The results of qRT-PCR showed that the OsNAP transcripts were accumulated gradually in response to leaf senescence and treatment with methyl jasmonic acid (MeJA)
OsNAP	Os03g0327800	LOC_Os03g21060	vegetative	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Rice plants overexpressing OsNAP did not show growth retardation, but showed a significantly reduced rate of water loss, enhanced tolerance to high salinity, drought and low temperature at the vegetative stage, and improved yield under drought stress at the flowering stage
OsNAP	Os03g0327800	LOC_Os03g21060	abscisic acid	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice
OsNAP	Os03g0327800	LOC_Os03g21060	leaf senescence	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice
OsNAP	Os03g0327800	LOC_Os03g21060	abscisic acid biosynthesis	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice
OsNAP	Os03g0327800	LOC_Os03g21060	grain-filling	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice	Additionally, reduced OsNAP expression leads to delayed leaf senescence and an extended grain-filling period, resulting in a 6.3% and 10.3% increase in the grain yield of two independent representative RNAi lines, respectively.
OsNAP	Os03g0327800	LOC_Os03g21060	yield	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice	Thus, fine-tuning OsNAP expression should be a useful strategy for improving rice yield in the future
OsNAPL6	Os02g0576700	LOC_Os02g36710	salinity	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	For instance, we show that OsNAPL6 is recruited to OsRad51 promoter activating its expression, leading to a more efficient DNA repair and abrogation of programmed cell death under salinity and genotoxic stress conditions
OsNAPL6	Os02g0576700	LOC_Os02g36710	abiotic stress	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	Utilizing overexpression and knockdown approaches, we found a positive correlation between OsNAPL6 expression levels and adaptation to multiple abiotic stresses
OsNAPL6	Os02g0576700	LOC_Os02g36710	abiotic stress	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	These results suggest that the histone chaperone OsNAPL6 may serve a regulatory role in abiotic stress physiology possibly via modulating nucleosome dynamics at various stress-associated genomic loci
OsNAPL6	Os02g0576700	LOC_Os02g36710	cell death	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	For instance, we show that OsNAPL6 is recruited to OsRad51 promoter activating its expression, leading to a more efficient DNA repair and abrogation of programmed cell death under salinity and genotoxic stress conditions
OsNAPL6	Os02g0576700	LOC_Os02g36710	stress	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	Results of comparative transcriptome profiling and promoter-recruitment studies indicate that OsNAPL6 functions during stress response via modulation of expression of various genes involved in diverse functions
OsNAPL6	Os02g0576700	LOC_Os02g36710	stress	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	For instance, we show that OsNAPL6 is recruited to OsRad51 promoter activating its expression, leading to a more efficient DNA repair and abrogation of programmed cell death under salinity and genotoxic stress conditions
OsNAPL6	Os02g0576700	LOC_Os02g36710	stress	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	These results suggest that the histone chaperone OsNAPL6 may serve a regulatory role in abiotic stress physiology possibly via modulating nucleosome dynamics at various stress-associated genomic loci
OsNAPL6	Os02g0576700	LOC_Os02g36710	biotic stress	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	Utilizing overexpression and knockdown approaches, we found a positive correlation between OsNAPL6 expression levels and adaptation to multiple abiotic stresses
OsNAPL6	Os02g0576700	LOC_Os02g36710	biotic stress	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	These results suggest that the histone chaperone OsNAPL6 may serve a regulatory role in abiotic stress physiology possibly via modulating nucleosome dynamics at various stress-associated genomic loci
OsNAPL6	Os02g0576700	LOC_Os02g36710	stress response	A NAP-family histone chaperone acts in abiotic stress response and adaptation.	Results of comparative transcriptome profiling and promoter-recruitment studies indicate that OsNAPL6 functions during stress response via modulation of expression of various genes involved in diverse functions
OsNaPRT1	Os03g0837300	LOC_Os03g62110	leaf	Mutation of OsNaPRT1 in the NAD Salvage Pathway Leads to Withered Leaf Tips in Rice	Mutation of OsNaPRT1 in the NAD Salvage Pathway Leads to Withered Leaf Tips in Rice
OsNaPRT1	Os03g0837300	LOC_Os03g62110	leaf	Mutation of OsNaPRT1 in the NAD Salvage Pathway Leads to Withered Leaf Tips in Rice	A point mutation in OsNaPRT1 leads to dwarfism and the withered leaf tip phenotype, and the lts1 mutant displays early leaf senescence compared to the wild type
OsNaPRT1	Os03g0837300	LOC_Os03g62110	senescence	Mutation of OsNaPRT1 in the NAD Salvage Pathway Leads to Withered Leaf Tips in Rice	A point mutation in OsNaPRT1 leads to dwarfism and the withered leaf tip phenotype, and the lts1 mutant displays early leaf senescence compared to the wild type
OsNaPRT1	Os03g0837300	LOC_Os03g62110	early leaf senescence	Mutation of OsNaPRT1 in the NAD Salvage Pathway Leads to Withered Leaf Tips in Rice	A point mutation in OsNaPRT1 leads to dwarfism and the withered leaf tip phenotype, and the lts1 mutant displays early leaf senescence compared to the wild type
OsNaPRT1	Os03g0837300	LOC_Os03g62110	leaf senescence	Mutation of OsNaPRT1 in the NAD Salvage Pathway Leads to Withered Leaf Tips in Rice	A point mutation in OsNaPRT1 leads to dwarfism and the withered leaf tip phenotype, and the lts1 mutant displays early leaf senescence compared to the wild type
OsNAR2.1	Os02g0595900	LOC_Os02g38230	transporter	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges
OsNAR2.1	Os02g0595900	LOC_Os02g38230	nitrate	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges
OsNAR2.1	Os02g0595900	LOC_Os02g38230	nitrate	Identification and functional assay of the interaction motifs in the partner protein OsNAR2.1 of the two-component system for high-affinity nitrate transport.	Identification and functional assay of the interaction motifs in the partner protein OsNAR2.1 of the two-component system for high-affinity nitrate transport.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	R protein	Identification and functional assay of the interaction motifs in the partner protein OsNAR2.1 of the two-component system for high-affinity nitrate transport.	Identification and functional assay of the interaction motifs in the partner protein OsNAR2.1 of the two-component system for high-affinity nitrate transport.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	nitrate	Two short sequences in OsNAR2.1 promoter are necessary for fully activating the nitrate induced gene expression in rice roots.	Two short sequences in OsNAR2.1 promoter are necessary for fully activating the nitrate induced gene expression in rice roots.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	root	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	R protein	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	lateral root	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	nitrate	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	grain	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	drought	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	tolerance	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	grain yield	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	yield	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	drought tolerance	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	stress	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	drought stress	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	drought stress 	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.	OsNAR2.1 Positively Regulates Drought Tolerance and Grain Yield Under Drought Stress Conditions in Rice.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	nitrate	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.
OsNAR2.1	Os02g0595900	LOC_Os02g38230	nitrogen	Co-Overexpression of OsNAR2.1 and OsNRT2.3a Increased Agronomic Nitrogen Use Efficiency in Transgenic Rice Plants	Co-Overexpression of OsNAR2.1 and OsNRT2.3a Increased Agronomic Nitrogen Use Efficiency in Transgenic Rice Plants
OsNAR2.1	Os02g0595900	LOC_Os02g38230	nitrogen	OsNAR2.1 induced endogenous nitrogen concentration variation affects transcriptional expression of miRNAs in rice.	OsNAR2.1 induced endogenous nitrogen concentration variation affects transcriptional expression of miRNAs in rice.
OsNAR2.2	Os04g0480200	LOC_Os04g40410	root	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.
OsNAR2.2	Os04g0480200	LOC_Os04g40410	growth	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.
OsNAR2.2	Os04g0480200	LOC_Os04g40410	development	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.
OsNAR2.2	Os04g0480200	LOC_Os04g40410	nitrate	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.
OsNAR2.2	Os04g0480200	LOC_Os04g40410	root growth	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.
OsNAS1	Os03g0307300	LOC_Os03g19427	transcription factor	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsNAS1	Os03g0307300	LOC_Os03g19427	iron	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron
OsNAS1	Os03g0307300	LOC_Os03g19427	vascular bundle	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	In Fe-deficient plants, OsNAS1 and OsNAS2 were expressed in the vascular bundles of green leaves and in all cells of leaves showing severe chlorosis
OsNAS1	Os03g0307300	LOC_Os03g19427	ethylene	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsNAS1	Os03g0307300	LOC_Os03g19427	root	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	OsNAS1 and OsNAS2 transcripts were detected in Fe-sufficient roots but not in leaves, and levels of both increased markedly in both roots and leaves in response to Fe deficiency
OsNAS1	Os03g0307300	LOC_Os03g19427	root	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	Promoter-GUS analysis revealed that OsNAS1 and OsNAS2 were expressed in Fe-sufficient roots in companion cells and pericycle cells adjacent to the protoxylem
OsNAS1	Os03g0307300	LOC_Os03g19427	root	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	With Fe deficiency, OsNAS1 and OsNAS2 expression extended to all root cells along with an increase in phytosiderophore secretion
OsNAS1	Os03g0307300	LOC_Os03g19427	xylem	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	Promoter-GUS analysis revealed that OsNAS1 and OsNAS2 were expressed in Fe-sufficient roots in companion cells and pericycle cells adjacent to the protoxylem
OsNAS2	Os03g0307200	LOC_Os03g19420	root	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	OsNAS1 and OsNAS2 transcripts were detected in Fe-sufficient roots but not in leaves, and levels of both increased markedly in both roots and leaves in response to Fe deficiency
OsNAS2	Os03g0307200	LOC_Os03g19420	root	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	Promoter-GUS analysis revealed that OsNAS1 and OsNAS2 were expressed in Fe-sufficient roots in companion cells and pericycle cells adjacent to the protoxylem
OsNAS2	Os03g0307200	LOC_Os03g19420	root	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	With Fe deficiency, OsNAS1 and OsNAS2 expression extended to all root cells along with an increase in phytosiderophore secretion
OsNAS2	Os03g0307200	LOC_Os03g19420	iron	Activation of Rice nicotianamine synthase 2 (OsNAS2) enhances iron availability for biofortification	Activation of iron deficiency-inducible OsNAS2 resulted in a rise in Fe content (3
OsNAS2	Os03g0307200	LOC_Os03g19420	iron	Activation of Rice nicotianamine synthase 2 (OsNAS2) enhances iron availability for biofortification	Activation of Rice nicotianamine synthase 2 (OsNAS2) enhances iron availability for biofortification
OsNAS2	Os03g0307200	LOC_Os03g19420	ethylene	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsNAS2	Os03g0307200	LOC_Os03g19420	zinc	Bio-available zinc in rice seeds is increased by activation tagging of nicotianamine synthase	Mice fed with OsNAS2-D1 seeds recovered more rapidly from a zinc deficiency than did control mice receiving WT seeds
OsNAS2	Os03g0307200	LOC_Os03g19420	zinc	Bio-available zinc in rice seeds is increased by activation tagging of nicotianamine synthase	These results demonstrate that the level of bio-available zinc in rice grains can be enhanced significantly by activation tagging of OsNAS2
OsNAS2	Os03g0307200	LOC_Os03g19420	seed	Activation of Rice nicotianamine synthase 2 (OsNAS2) enhances iron availability for biofortification	Mice fed with OsNAS2-D1 seeds recovered more rapidly from anemia, indicating that bioavailable Fe contents were improved by this increase in OsNAS2 expression
OsNAS2	Os03g0307200	LOC_Os03g19420	seed	Bio-available zinc in rice seeds is increased by activation tagging of nicotianamine synthase	Mice fed with OsNAS2-D1 seeds recovered more rapidly from a zinc deficiency than did control mice receiving WT seeds
OsNAS2	Os03g0307200	LOC_Os03g19420	endosperm	Bio-available zinc in rice seeds is increased by activation tagging of nicotianamine synthase	In the endosperm, the OsNAS2 activation-tagged line contained up to 20-fold more NA and 2
OsNAS2	Os03g0307200	LOC_Os03g19420	vascular bundle	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	In Fe-deficient plants, OsNAS1 and OsNAS2 were expressed in the vascular bundles of green leaves and in all cells of leaves showing severe chlorosis
OsNAS2	Os03g0307200	LOC_Os03g19420	transcription factor	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsNAS2	Os03g0307200	LOC_Os03g19420	xylem	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	Promoter-GUS analysis revealed that OsNAS1 and OsNAS2 were expressed in Fe-sufficient roots in companion cells and pericycle cells adjacent to the protoxylem
OsNAS2	Os03g0307200	LOC_Os03g19420	iron	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron
OsNAS2	Os03g0307200	LOC_Os03g19420	grain	Bio-available zinc in rice seeds is increased by activation tagging of nicotianamine synthase	These results demonstrate that the level of bio-available zinc in rice grains can be enhanced significantly by activation tagging of OsNAS2
OsNAS2	Os03g0307200	LOC_Os03g19420	zinc	Rice NICOTIANAMINE SYNTHASE 2 expression improves dietary iron and zinc levels in wheat.	We obtained significant increases of iron and zinc content in wheat grains of plants expressing either OsNAS2 or PvFERRTIN, or both genes
OsNAS2	Os03g0307200	LOC_Os03g19420	iron	Rice NICOTIANAMINE SYNTHASE 2 expression improves dietary iron and zinc levels in wheat.	We obtained significant increases of iron and zinc content in wheat grains of plants expressing either OsNAS2 or PvFERRTIN, or both genes
OsNAS2	Os03g0307200	LOC_Os03g19420	tolerance	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.	 Our research suggests that simultaneous activation of OsNAS2 and OsNAS3 can enhance Fe and Zn accumulation in rice grains while also increasing plant tolerance to growing situations with metal deficiency and excess metal availability
OsNAS2	Os03g0307200	LOC_Os03g19420	zinc	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.
OsNAS2	Os03g0307200	LOC_Os03g19420	iron	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.
OsNAS2	Os03g0307200	LOC_Os03g19420	Fe	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.	 Our research suggests that simultaneous activation of OsNAS2 and OsNAS3 can enhance Fe and Zn accumulation in rice grains while also increasing plant tolerance to growing situations with metal deficiency and excess metal availability
OsNAS3	Os07g0689600	LOC_Os07g48980	root	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	In contrast, the OsNAS3 transcript was present in leaves but was very low in roots of Fe-sufficient plants
OsNAS3	Os07g0689600	LOC_Os07g48980	root	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	Further, OsNAS3 expression was induced in roots but was suppressed in leaves in response to Fe deficiency
OsNAS3	Os07g0689600	LOC_Os07g48980	root	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	OsNAS3 expression was restricted to the pericycle and companion cells of the roots, and in companion cells of leaves irrespective of Fe status
OsNAS3	Os07g0689600	LOC_Os07g48980	root	Iron fortification of rice seeds through activation of the nicotianamine synthase gene	Shoots and roots of the OsNAS3 activation-tagged plants (OsNAS3-D1) accumulated more Fe and Zn
OsNAS3	Os07g0689600	LOC_Os07g48980	shoot	Iron fortification of rice seeds through activation of the nicotianamine synthase gene	Shoots and roots of the OsNAS3 activation-tagged plants (OsNAS3-D1) accumulated more Fe and Zn
OsNAS3	Os07g0689600	LOC_Os07g48980	seed	Iron fortification of rice seeds through activation of the nicotianamine synthase gene	Seeds from our OsNAS3-D1 plants grown on a paddy field contained elevated amounts of Fe (2
OsNAS3	Os07g0689600	LOC_Os07g48980	seed	Iron fortification of rice seeds through activation of the nicotianamine synthase gene	6-fold in OsNAS3-D1 seeds
OsNAS3	Os07g0689600	LOC_Os07g48980	seed	Iron fortification of rice seeds through activation of the nicotianamine synthase gene	Analysis by size exclusion chromatography coupled with inductively coupled plasma mass spectroscopy showed that WT and OsNAS3-D1 seeds contained equal amounts of Fe bound to IP6, whereas OsNAS3-D1 had 7-fold more Fe bound to a low molecular mass, which was likely NA
OsNAS3	Os07g0689600	LOC_Os07g48980	transcription factor	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor	Differential expression of selected genes (encoding 7 transport proteins, the OsNAS3 enzyme and the OsNAC5 transcription factor) was confirmed by quantitative RT-PCR
OsNAS3	Os07g0689600	LOC_Os07g48980	iron	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron
OsNAS3	Os07g0689600	LOC_Os07g48980	tolerance	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.	 Our research suggests that simultaneous activation of OsNAS2 and OsNAS3 can enhance Fe and Zn accumulation in rice grains while also increasing plant tolerance to growing situations with metal deficiency and excess metal availability
OsNAS3	Os07g0689600	LOC_Os07g48980	zinc	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.
OsNAS3	Os07g0689600	LOC_Os07g48980	iron	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.
OsNAS3	Os07g0689600	LOC_Os07g48980	Fe	Concomitant Activation of OsNAS2 and OsNAS3 Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.	 Our research suggests that simultaneous activation of OsNAS2 and OsNAS3 can enhance Fe and Zn accumulation in rice grains while also increasing plant tolerance to growing situations with metal deficiency and excess metal availability
OsNBL1	Os10g0478900	LOC_Os10g33855	leaf	OsNBL1, a Multi-Organelle Localized Protein, Plays Essential Roles in Rice Senescence, Disease Resistance, and Salt Tolerance	Disruption of OsNBL1 resulted in accelerated dark-induced leaf senescence, accompanied by a reduction in chlorophyll content and up-regulation of several senescence-associated genes
OsNBL1	Os10g0478900	LOC_Os10g33855	leaf senescence	OsNBL1, a Multi-Organelle Localized Protein, Plays Essential Roles in Rice Senescence, Disease Resistance, and Salt Tolerance	Disruption of OsNBL1 resulted in accelerated dark-induced leaf senescence, accompanied by a reduction in chlorophyll content and up-regulation of several senescence-associated genes
OsNBL1	Os10g0478900	LOC_Os10g33855	senescence	OsNBL1, a Multi-Organelle Localized Protein, Plays Essential Roles in Rice Senescence, Disease Resistance, and Salt Tolerance	OsNBL1 is a multi-organelle localized protein and interacts with OsClpP6, which is associated with senescence
OsNBL1	Os10g0478900	LOC_Os10g33855	chlorophyll content	OsNBL1, a Multi-Organelle Localized Protein, Plays Essential Roles in Rice Senescence, Disease Resistance, and Salt Tolerance	Disruption of OsNBL1 resulted in accelerated dark-induced leaf senescence, accompanied by a reduction in chlorophyll content and up-regulation of several senescence-associated genes
OsNBL1	Os10g0478900	LOC_Os10g33855	chlorophyll content	OsNBL1, a Multi-Organelle Localized Protein, Plays Essential Roles in Rice Senescence, Disease Resistance, and Salt Tolerance	Plants overexpressing OsNBL1 showed delayed dark-induced senescence, consistent with a higher chlorophyll content compared to wild-type plants
OsNBL3	Os03g0159700	LOC_Os03g06370	resistance	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	RNA interference lines of OsNBL3 exhibited enhanced disease resistance similar to that of nbl3, while the disease resistance in overexpression lines did not differ from that of the wild type
OsNBL3	Os03g0159700	LOC_Os03g06370	resistance	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	Overall, the results demonstrated that the PPR protein-coding gene OsNBL3 is essential for mitochondrial development and functions, and its disruption causes the lesion mimic phenotype and enhances disease resistance and tolerance to salt in rice
OsNBL3	Os03g0159700	LOC_Os03g06370	development	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	Overall, the results demonstrated that the PPR protein-coding gene OsNBL3 is essential for mitochondrial development and functions, and its disruption causes the lesion mimic phenotype and enhances disease resistance and tolerance to salt in rice
OsNBL3	Os03g0159700	LOC_Os03g06370	disease	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	RNA interference lines of OsNBL3 exhibited enhanced disease resistance similar to that of nbl3, while the disease resistance in overexpression lines did not differ from that of the wild type
OsNBL3	Os03g0159700	LOC_Os03g06370	disease	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	Overall, the results demonstrated that the PPR protein-coding gene OsNBL3 is essential for mitochondrial development and functions, and its disruption causes the lesion mimic phenotype and enhances disease resistance and tolerance to salt in rice
OsNBL3	Os03g0159700	LOC_Os03g06370	disease resistance	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	RNA interference lines of OsNBL3 exhibited enhanced disease resistance similar to that of nbl3, while the disease resistance in overexpression lines did not differ from that of the wild type
OsNBL3	Os03g0159700	LOC_Os03g06370	disease resistance	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	Overall, the results demonstrated that the PPR protein-coding gene OsNBL3 is essential for mitochondrial development and functions, and its disruption causes the lesion mimic phenotype and enhances disease resistance and tolerance to salt in rice
OsNBL3	Os03g0159700	LOC_Os03g06370	salt	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	Overall, the results demonstrated that the PPR protein-coding gene OsNBL3 is essential for mitochondrial development and functions, and its disruption causes the lesion mimic phenotype and enhances disease resistance and tolerance to salt in rice
OsNBL3	Os03g0159700	LOC_Os03g06370	tolerance	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	Overall, the results demonstrated that the PPR protein-coding gene OsNBL3 is essential for mitochondrial development and functions, and its disruption causes the lesion mimic phenotype and enhances disease resistance and tolerance to salt in rice
OsNBL3	Os03g0159700	LOC_Os03g06370	R protein	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	Overall, the results demonstrated that the PPR protein-coding gene OsNBL3 is essential for mitochondrial development and functions, and its disruption causes the lesion mimic phenotype and enhances disease resistance and tolerance to salt in rice
OsNBL3	Os03g0159700	LOC_Os03g06370	lesion	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	Overall, the results demonstrated that the PPR protein-coding gene OsNBL3 is essential for mitochondrial development and functions, and its disruption causes the lesion mimic phenotype and enhances disease resistance and tolerance to salt in rice
OsNBL3	Os03g0159700	LOC_Os03g06370	lesion mimic	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses	Overall, the results demonstrated that the PPR protein-coding gene OsNBL3 is essential for mitochondrial development and functions, and its disruption causes the lesion mimic phenotype and enhances disease resistance and tolerance to salt in rice
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	seed	RNAi-mediated Suppression of Three Rice Carotenoid Cleavage Dioxygenase Genes, OsCCD1, 4a, and 4b, Increases Carotenoid Content of Rice.	 Collectively, the blocking of OsCCD4a activity might have potential as a practical tool for enhancing the carotenoid level of the carotenoid-accumulating seed endosperms as well as leaves of rice plants
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	tolerance	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.	 Overexpression of OsNCED1 improved the HS tolerance of rice at the heading and flowering stage
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	tolerance	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.	 These results suggested that OsNCED1 overexpression can improve the heat tolerance of rice by enhancing the antioxidant capacity
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	stress	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	stress tolerance	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	flowering	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.	 Overexpression of OsNCED1 improved the HS tolerance of rice at the heading and flowering stage
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	heat stress	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	Heat Stress	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	heat tolerance	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of OsNCED1 Gene in Heat Stress Tolerance.	 These results suggested that OsNCED1 overexpression can improve the heat tolerance of rice by enhancing the antioxidant capacity
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	seedlings	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Rice seedlings overexpressing OsNCED1 showed enhanced heat tolerance with more abundant ABA content, whereas the knockout mutant osnced1 accumulated less ABA and showed more sensitive to heat stress
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	stress	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Here, we found that OsNCED1 was a heat stress inducible gene
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	stress	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Rice seedlings overexpressing OsNCED1 showed enhanced heat tolerance with more abundant ABA content, whereas the knockout mutant osnced1 accumulated less ABA and showed more sensitive to heat stress
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	seedling	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Together, our results indicate that OsNCED1 positively regulates heat tolerance of rice seedling by raising endogenous ABA contents, which leads to the improved antioxidant capacity and activated expression of heat and ABA related genes
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	defense	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Moreover, real time-quantitative PCR (RT-qPCR) analysis showed that overexpression of OsNCED1 significantly activated the expression of genes involved in antioxidant enzymes, ABA signaling pathway, heat response, and defense
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	tolerance	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Rice seedlings overexpressing OsNCED1 showed enhanced heat tolerance with more abundant ABA content, whereas the knockout mutant osnced1 accumulated less ABA and showed more sensitive to heat stress
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	tolerance	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Together, our results indicate that OsNCED1 positively regulates heat tolerance of rice seedling by raising endogenous ABA contents, which leads to the improved antioxidant capacity and activated expression of heat and ABA related genes
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	ABA	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Rice seedlings overexpressing OsNCED1 showed enhanced heat tolerance with more abundant ABA content, whereas the knockout mutant osnced1 accumulated less ABA and showed more sensitive to heat stress
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	ABA	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Moreover, real time-quantitative PCR (RT-qPCR) analysis showed that overexpression of OsNCED1 significantly activated the expression of genes involved in antioxidant enzymes, ABA signaling pathway, heat response, and defense
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	ABA	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Together, our results indicate that OsNCED1 positively regulates heat tolerance of rice seedling by raising endogenous ABA contents, which leads to the improved antioxidant capacity and activated expression of heat and ABA related genes
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	 ABA 	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Rice seedlings overexpressing OsNCED1 showed enhanced heat tolerance with more abundant ABA content, whereas the knockout mutant osnced1 accumulated less ABA and showed more sensitive to heat stress
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	 ABA 	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Moreover, real time-quantitative PCR (RT-qPCR) analysis showed that overexpression of OsNCED1 significantly activated the expression of genes involved in antioxidant enzymes, ABA signaling pathway, heat response, and defense
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	 ABA 	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Together, our results indicate that OsNCED1 positively regulates heat tolerance of rice seedling by raising endogenous ABA contents, which leads to the improved antioxidant capacity and activated expression of heat and ABA related genes
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	reactive oxygen species	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Under heat stress, increased expression of OsNCED1 could reduce membrane damage and reactive oxygen species (ROS) level of plants, and elevate the activity of antioxidant enzymes
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	heat stress	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Here, we found that OsNCED1 was a heat stress inducible gene
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	heat stress	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Rice seedlings overexpressing OsNCED1 showed enhanced heat tolerance with more abundant ABA content, whereas the knockout mutant osnced1 accumulated less ABA and showed more sensitive to heat stress
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	heat stress	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Under heat stress, increased expression of OsNCED1 could reduce membrane damage and reactive oxygen species (ROS) level of plants, and elevate the activity of antioxidant enzymes
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	Heat Stress	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Here, we found that OsNCED1 was a heat stress inducible gene
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	Heat Stress	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Rice seedlings overexpressing OsNCED1 showed enhanced heat tolerance with more abundant ABA content, whereas the knockout mutant osnced1 accumulated less ABA and showed more sensitive to heat stress
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	Heat Stress	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Under heat stress, increased expression of OsNCED1 could reduce membrane damage and reactive oxygen species (ROS) level of plants, and elevate the activity of antioxidant enzymes
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	heat tolerance	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Rice seedlings overexpressing OsNCED1 showed enhanced heat tolerance with more abundant ABA content, whereas the knockout mutant osnced1 accumulated less ABA and showed more sensitive to heat stress
OsNCED1|OsCCD4a	Os02g0704000	LOC_Os02g47510	heat tolerance	9-cis-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	 Together, our results indicate that OsNCED1 positively regulates heat tolerance of rice seedling by raising endogenous ABA contents, which leads to the improved antioxidant capacity and activated expression of heat and ABA related genes
OsNCED2	Os12g0435200	LOC_Os12g24800	anther	ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice	The differences in endogenous ABA levels in Doongara and R31 correlated with differences in expression of the ABA biosynthetic genes encoding zeaxanthin epoxidase (OSZEP1) and 9-cis-epoxycarotenoid dioxygenase (OSNCED2, OSNCED3) in anthers
OsNCED2	Os12g0435200	LOC_Os12g24800	ABA	ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice	The differences in endogenous ABA levels in Doongara and R31 correlated with differences in expression of the ABA biosynthetic genes encoding zeaxanthin epoxidase (OSZEP1) and 9-cis-epoxycarotenoid dioxygenase (OSNCED2, OSNCED3) in anthers
OsNCED2	Os12g0435200	LOC_Os12g24800	ABA	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	Overexpression of OsFbx352 led to a reduction in expression of genes responsible for ABA synthesis (OsNced2, OsNced3) and an increase in expression of genes encoding ABA catabolism (OsAba-ox2, OsAba-ox3) in the presence of glucose
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	The data suggest that, in addition to ABA biosynthesis, the monocot OsNCED3 gene may have additional functions in shaping leaf morphology and vascular bundle development in Arabidopsis
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology
OsNCED3	Os03g0645900	LOC_Os03g44380	seed	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Furthermore, overexpression of OsNCED3 in wild-type Arabidopsis plants results in increased accumulation of ABA, reduced relative water loss, delayed seed germination, and greater drought tolerance relative to that of wild-type
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	ABA controls H(2)O(2) accumulation through the induction of OsCATB in rice leaves under water stress	As a key gene in ABA biosynthesis, OsNCED3 was significantly induced in rice by water stress treatment and such induction preceded the rapid increase in ABA
OsNCED3	Os03g0645900	LOC_Os03g44380	anther	ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice	The differences in endogenous ABA levels in Doongara and R31 correlated with differences in expression of the ABA biosynthetic genes encoding zeaxanthin epoxidase (OSZEP1) and 9-cis-epoxycarotenoid dioxygenase (OSNCED2, OSNCED3) in anthers
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice	The differences in endogenous ABA levels in Doongara and R31 correlated with differences in expression of the ABA biosynthetic genes encoding zeaxanthin epoxidase (OSZEP1) and 9-cis-epoxycarotenoid dioxygenase (OSNCED2, OSNCED3) in anthers
OsNCED3	Os03g0645900	LOC_Os03g44380	drought tolerance	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Furthermore, overexpression of OsNCED3 in wild-type Arabidopsis plants results in increased accumulation of ABA, reduced relative water loss, delayed seed germination, and greater drought tolerance relative to that of wild-type
OsNCED3	Os03g0645900	LOC_Os03g44380	vascular bundle	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	The data suggest that, in addition to ABA biosynthesis, the monocot OsNCED3 gene may have additional functions in shaping leaf morphology and vascular bundle development in Arabidopsis
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice	Overexpression of OsFbx352 led to a reduction in expression of genes responsible for ABA synthesis (OsNced2, OsNced3) and an increase in expression of genes encoding ABA catabolism (OsAba-ox2, OsAba-ox3) in the presence of glucose
OsNCED3	Os03g0645900	LOC_Os03g44380	leaf	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Transgenic Arabidopsis lines overexpressing the monocot OsNCED3 gene in a wild-type background result in a smaller and rounder leaf shape and midvein
OsNCED3	Os03g0645900	LOC_Os03g44380	leaf	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	The data suggest that, in addition to ABA biosynthesis, the monocot OsNCED3 gene may have additional functions in shaping leaf morphology and vascular bundle development in Arabidopsis
OsNCED3	Os03g0645900	LOC_Os03g44380	leaf	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology
OsNCED3	Os03g0645900	LOC_Os03g44380	leaf shape	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Transgenic Arabidopsis lines overexpressing the monocot OsNCED3 gene in a wild-type background result in a smaller and rounder leaf shape and midvein
OsNCED3	Os03g0645900	LOC_Os03g44380	seed germination	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Furthermore, overexpression of OsNCED3 in wild-type Arabidopsis plants results in increased accumulation of ABA, reduced relative water loss, delayed seed germination, and greater drought tolerance relative to that of wild-type
OsNCED3	Os03g0645900	LOC_Os03g44380	drought	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Furthermore, overexpression of OsNCED3 in wild-type Arabidopsis plants results in increased accumulation of ABA, reduced relative water loss, delayed seed germination, and greater drought tolerance relative to that of wild-type
OsNCED3	Os03g0645900	LOC_Os03g44380	leaf	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Further analysis found that nced3 mutants contained lower ABA content compared with wild-type plants, overexpression of OsNCED3 in transgenic plants could enhance water stress tolerance, promote leaf senescence and increase ABA content
OsNCED3	Os03g0645900	LOC_Os03g44380	leaf	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	leaf senescence	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Further analysis found that nced3 mutants contained lower ABA content compared with wild-type plants, overexpression of OsNCED3 in transgenic plants could enhance water stress tolerance, promote leaf senescence and increase ABA content
OsNCED3	Os03g0645900	LOC_Os03g44380	leaf senescence	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	senescence	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Further analysis found that nced3 mutants contained lower ABA content compared with wild-type plants, overexpression of OsNCED3 in transgenic plants could enhance water stress tolerance, promote leaf senescence and increase ABA content
OsNCED3	Os03g0645900	LOC_Os03g44380	senescence	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	seed	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	tolerance	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Here, we report important functions of OsNCED3 in multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	tolerance	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 The OsNCED3 is constitutively expressed in various tissues under normal condition, Its expression is highly induced by NaCl, PEG, and H2O2 stress, suggesting the roles for OsNCED3 in response to the multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	abiotic stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Here, we report important functions of OsNCED3 in multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	abiotic stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 The OsNCED3 is constitutively expressed in various tissues under normal condition, Its expression is highly induced by NaCl, PEG, and H2O2 stress, suggesting the roles for OsNCED3 in response to the multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	abiotic stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Further analysis found that nced3 mutants contained lower ABA content compared with wild-type plants, overexpression of OsNCED3 in transgenic plants could enhance water stress tolerance, promote leaf senescence and increase ABA content
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Here, we report important functions of OsNCED3 in multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 The OsNCED3 is constitutively expressed in various tissues under normal condition, Its expression is highly induced by NaCl, PEG, and H2O2 stress, suggesting the roles for OsNCED3 in response to the multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Further analysis found that nced3 mutants contained lower ABA content compared with wild-type plants, overexpression of OsNCED3 in transgenic plants could enhance water stress tolerance, promote leaf senescence and increase ABA content
OsNCED3	Os03g0645900	LOC_Os03g44380	stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	biotic stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Here, we report important functions of OsNCED3 in multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	biotic stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 The OsNCED3 is constitutively expressed in various tissues under normal condition, Its expression is highly induced by NaCl, PEG, and H2O2 stress, suggesting the roles for OsNCED3 in response to the multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	biotic stress	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Further analysis found that nced3 mutants contained lower ABA content compared with wild-type plants, overexpression of OsNCED3 in transgenic plants could enhance water stress tolerance, promote leaf senescence and increase ABA content
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	quality	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	stress tolerance	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Here, we report important functions of OsNCED3 in multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	stress tolerance	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 The OsNCED3 is constitutively expressed in various tissues under normal condition, Its expression is highly induced by NaCl, PEG, and H2O2 stress, suggesting the roles for OsNCED3 in response to the multi-abiotic stress tolerance in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	stress tolerance	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 Further analysis found that nced3 mutants contained lower ABA content compared with wild-type plants, overexpression of OsNCED3 in transgenic plants could enhance water stress tolerance, promote leaf senescence and increase ABA content
OsNCED3	Os03g0645900	LOC_Os03g44380	stress tolerance	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	plant growth	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA biosynthesis	9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice	 We conclude that OsNCED3 mediates seed dormancy, plant growth, abiotic stress tolerance, and leaf senescence by regulating ABA biosynthesis in rice; and may provide a new strategy for improving the quality of crop
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	The Wild Rice Locus CTS-12 Mediates ABA-Dependent Stomatal Opening Modulation to Limit Water Loss Under Severe Chilling Stress	 CRISPR/Cas9-edited OsNCED3 resulted in chilling sensitive of japonica rice ZH11, demonstrating the involvement of ABA pathway in chilling stress response
OsNCED3	Os03g0645900	LOC_Os03g44380	stress	The Wild Rice Locus CTS-12 Mediates ABA-Dependent Stomatal Opening Modulation to Limit Water Loss Under Severe Chilling Stress	 CRISPR/Cas9-edited OsNCED3 resulted in chilling sensitive of japonica rice ZH11, demonstrating the involvement of ABA pathway in chilling stress response
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA	The Wild Rice Locus CTS-12 Mediates ABA-Dependent Stomatal Opening Modulation to Limit Water Loss Under Severe Chilling Stress	 CRISPR/Cas9-edited OsNCED3 resulted in chilling sensitive of japonica rice ZH11, demonstrating the involvement of ABA pathway in chilling stress response
OsNCED3	Os03g0645900	LOC_Os03g44380	chilling	The Wild Rice Locus CTS-12 Mediates ABA-Dependent Stomatal Opening Modulation to Limit Water Loss Under Severe Chilling Stress	 CRISPR/Cas9-edited OsNCED3 resulted in chilling sensitive of japonica rice ZH11, demonstrating the involvement of ABA pathway in chilling stress response
OsNCED3	Os03g0645900	LOC_Os03g44380	stress response	The Wild Rice Locus CTS-12 Mediates ABA-Dependent Stomatal Opening Modulation to Limit Water Loss Under Severe Chilling Stress	 CRISPR/Cas9-edited OsNCED3 resulted in chilling sensitive of japonica rice ZH11, demonstrating the involvement of ABA pathway in chilling stress response
OsNCED3	Os03g0645900	LOC_Os03g44380	chilling stress	The Wild Rice Locus CTS-12 Mediates ABA-Dependent Stomatal Opening Modulation to Limit Water Loss Under Severe Chilling Stress	 CRISPR/Cas9-edited OsNCED3 resulted in chilling sensitive of japonica rice ZH11, demonstrating the involvement of ABA pathway in chilling stress response
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA	SiMYB19 from Foxtail Millet (Setaria italica) Confers Transgenic Rice Tolerance to High Salt Stress in the Field.	 SiMYB19 overexpression promotes abscisic acid (ABA) accumulation in transgenic rice and upregulates the ABA synthesis gene OsNCED3 and the ABA signal transduction pathway-related genes OsPK1 and OsABF2
OsNCED3	Os03g0645900	LOC_Os03g44380	abscisic acid	SiMYB19 from Foxtail Millet (Setaria italica) Confers Transgenic Rice Tolerance to High Salt Stress in the Field.	 SiMYB19 overexpression promotes abscisic acid (ABA) accumulation in transgenic rice and upregulates the ABA synthesis gene OsNCED3 and the ABA signal transduction pathway-related genes OsPK1 and OsABF2
OsNCED3	Os03g0645900	LOC_Os03g44380	signal transduction	SiMYB19 from Foxtail Millet (Setaria italica) Confers Transgenic Rice Tolerance to High Salt Stress in the Field.	 SiMYB19 overexpression promotes abscisic acid (ABA) accumulation in transgenic rice and upregulates the ABA synthesis gene OsNCED3 and the ABA signal transduction pathway-related genes OsPK1 and OsABF2
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	SiMYB19 from Foxtail Millet (Setaria italica) Confers Transgenic Rice Tolerance to High Salt Stress in the Field.	 SiMYB19 overexpression promotes abscisic acid (ABA) accumulation in transgenic rice and upregulates the ABA synthesis gene OsNCED3 and the ABA signal transduction pathway-related genes OsPK1 and OsABF2
OsNCED3	Os03g0645900	LOC_Os03g44380	resistance	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 This study shows that overexpression of OsNCED3 in rice improves resistance to BPH, and has potential merit in rice breeding programs
OsNCED3	Os03g0645900	LOC_Os03g44380	defense	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.
OsNCED3	Os03g0645900	LOC_Os03g44380	defense	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 In rice, OsNCED3 was shown to promote ABA synthesis, and improve abiotic stress tolerance, but the function of OsNCED3 in regulating rice defense against the brown planthopper (Nilaparvata lugens; BPH) has been unclear
OsNCED3	Os03g0645900	LOC_Os03g44380	abiotic stress	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 In rice, OsNCED3 was shown to promote ABA synthesis, and improve abiotic stress tolerance, but the function of OsNCED3 in regulating rice defense against the brown planthopper (Nilaparvata lugens; BPH) has been unclear
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 In rice, OsNCED3 was shown to promote ABA synthesis, and improve abiotic stress tolerance, but the function of OsNCED3 in regulating rice defense against the brown planthopper (Nilaparvata lugens; BPH) has been unclear
OsNCED3	Os03g0645900	LOC_Os03g44380	brown planthopper	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.
OsNCED3	Os03g0645900	LOC_Os03g44380	brown planthopper	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 In rice, OsNCED3 was shown to promote ABA synthesis, and improve abiotic stress tolerance, but the function of OsNCED3 in regulating rice defense against the brown planthopper (Nilaparvata lugens; BPH) has been unclear
OsNCED3	Os03g0645900	LOC_Os03g44380	stress	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 In rice, OsNCED3 was shown to promote ABA synthesis, and improve abiotic stress tolerance, but the function of OsNCED3 in regulating rice defense against the brown planthopper (Nilaparvata lugens; BPH) has been unclear
OsNCED3	Os03g0645900	LOC_Os03g44380	biotic stress	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 In rice, OsNCED3 was shown to promote ABA synthesis, and improve abiotic stress tolerance, but the function of OsNCED3 in regulating rice defense against the brown planthopper (Nilaparvata lugens; BPH) has been unclear
OsNCED3	Os03g0645900	LOC_Os03g44380	stress tolerance	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 In rice, OsNCED3 was shown to promote ABA synthesis, and improve abiotic stress tolerance, but the function of OsNCED3 in regulating rice defense against the brown planthopper (Nilaparvata lugens; BPH) has been unclear
OsNCED3	Os03g0645900	LOC_Os03g44380	breeding	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 This study shows that overexpression of OsNCED3 in rice improves resistance to BPH, and has potential merit in rice breeding programs
OsNCED3	Os03g0645900	LOC_Os03g44380	resistant	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 Rice lines overexpressing OsNCED3 (OE) were more resistant to BPH than the wild-type cv
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	 In rice, OsNCED3 was shown to promote ABA synthesis, and improve abiotic stress tolerance, but the function of OsNCED3 in regulating rice defense against the brown planthopper (Nilaparvata lugens; BPH) has been unclear
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Furthermore, Overexpression of OsABT decreased the abscisic acid (ABA) content, while downregulating the ABA synthesis genes OsNCED3 and OsNCED4 and upregulating the ABA catabolic gene OsABA8ox2
OsNCED3	Os03g0645900	LOC_Os03g44380	abscisic acid	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Furthermore, Overexpression of OsABT decreased the abscisic acid (ABA) content, while downregulating the ABA synthesis genes OsNCED3 and OsNCED4 and upregulating the ABA catabolic gene OsABA8ox2
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Furthermore, Overexpression of OsABT decreased the abscisic acid (ABA) content, while downregulating the ABA synthesis genes OsNCED3 and OsNCED4 and upregulating the ABA catabolic gene OsABA8ox2
OsNCED3	Os03g0645900	LOC_Os03g44380	growth	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	development	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.
OsNCED3	Os03g0645900	LOC_Os03g44380	grain	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.
OsNCED3	Os03g0645900	LOC_Os03g44380	grain	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Intriguingly, the overexpression of OsNCED3 resulted in increased grain size and weight, whereas the disruption of OsNCED3 function decreased grain size and weight
OsNCED3	Os03g0645900	LOC_Os03g44380	grain size	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Intriguingly, the overexpression of OsNCED3 resulted in increased grain size and weight, whereas the disruption of OsNCED3 function decreased grain size and weight
OsNCED3	Os03g0645900	LOC_Os03g44380	resistance	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.
OsNCED3	Os03g0645900	LOC_Os03g44380	resistance	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 However, the overexpression of OsNCED3 enhanced PHS resistance by regulating proper ABA/GA ratio in the embryo
OsNCED3	Os03g0645900	LOC_Os03g44380	seed	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	seed	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Nucleotide diversity analyses suggested that OsNCED3 may be selected during japonica populations adaptation of seed dormancy and germination
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	abscisic acid	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 OsNCED3 encodes a chloroplast-localized abscisic acid (ABA) biosynthetic enzyme highly expressed in the embryo of developing seeds
OsNCED3	Os03g0645900	LOC_Os03g44380	 ABA 	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	ABA biosynthesis	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.
OsNCED3	Os03g0645900	LOC_Os03g44380	dormancy	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	dormancy	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Nucleotide diversity analyses suggested that OsNCED3 may be selected during japonica populations adaptation of seed dormancy and germination
OsNCED3	Os03g0645900	LOC_Os03g44380	embryo	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 OsNCED3 encodes a chloroplast-localized abscisic acid (ABA) biosynthetic enzyme highly expressed in the embryo of developing seeds
OsNCED3	Os03g0645900	LOC_Os03g44380	embryo	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 However, the overexpression of OsNCED3 enhanced PHS resistance by regulating proper ABA/GA ratio in the embryo
OsNCED3	Os03g0645900	LOC_Os03g44380	seed dormancy	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice
OsNCED3	Os03g0645900	LOC_Os03g44380	seed dormancy	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	 Nucleotide diversity analyses suggested that OsNCED3 may be selected during japonica populations adaptation of seed dormancy and germination
OsNCED4	Os07g0154100	LOC_Os07g05940	salt	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsNCED4	Os07g0154100	LOC_Os07g05940	drought	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
OsNCED4	Os07g0154100	LOC_Os07g05940	 ABA 	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
OsNCED4	Os07g0154100	LOC_Os07g05940	drought	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsNCED4	Os07g0154100	LOC_Os07g05940	ethylene	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice	Overexpression of OsDSR2 could increase salt and simulated drought (polyethyleneglycol)-stress sensitivities in rice by downregulating the expression of ABA- and stress-responsive genes including OsNCED4, SNAC1, OsbZIP23, P5CS, Oslea3 and rab16C
OsNCED4	Os07g0154100	LOC_Os07g05940	leaf	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	The 9-cis-epoxycarotenoid dioxygenases OsNCED4 was cloned from rice in conjunction with OsNCED 1-3 and 5, of which 3 has been shown to function in ABA biosynthesis and alteration of leaf morphology
OsNCED4	Os07g0154100	LOC_Os07g05940	leaf	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Heterologous expression of OsNCED4 in Arabidopsis increased ABA levels and altered plant size and leaf shape, delayed seed germination, caused sugar oversensitivity in post-germination growth, and enhanced tolerance to drought
OsNCED4	Os07g0154100	LOC_Os07g05940	seed	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Heterologous expression of OsNCED4 in Arabidopsis increased ABA levels and altered plant size and leaf shape, delayed seed germination, caused sugar oversensitivity in post-germination growth, and enhanced tolerance to drought
OsNCED4	Os07g0154100	LOC_Os07g05940	drought	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Heterologous expression of OsNCED4 in Arabidopsis increased ABA levels and altered plant size and leaf shape, delayed seed germination, caused sugar oversensitivity in post-germination growth, and enhanced tolerance to drought
OsNCED4	Os07g0154100	LOC_Os07g05940	salt	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	 At the one-leaf stage, similar regulation of OsNCED3 and OsNCED4 gene expression in roots or leaves in response to moderate salt stress (150<U+00A0>mM NaCl) was observed
OsNCED4	Os07g0154100	LOC_Os07g05940	seed germination	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Heterologous expression of OsNCED4 in Arabidopsis increased ABA levels and altered plant size and leaf shape, delayed seed germination, caused sugar oversensitivity in post-germination growth, and enhanced tolerance to drought
OsNCED4	Os07g0154100	LOC_Os07g05940	tolerance	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Heterologous expression of OsNCED4 in Arabidopsis increased ABA levels and altered plant size and leaf shape, delayed seed germination, caused sugar oversensitivity in post-germination growth, and enhanced tolerance to drought
OsNCED4	Os07g0154100	LOC_Os07g05940	 ABA 	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	The 9-cis-epoxycarotenoid dioxygenases OsNCED4 was cloned from rice in conjunction with OsNCED 1-3 and 5, of which 3 has been shown to function in ABA biosynthesis and alteration of leaf morphology
OsNCED4	Os07g0154100	LOC_Os07g05940	 ABA 	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	 Thus, transgenic Arabidopsis plants overexpressing OsNCED4 were generated in the 129B08/nced3 mutant background to explore OsNCED4 function in ABA biosynthesis
OsNCED4	Os07g0154100	LOC_Os07g05940	 ABA 	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Heterologous expression of OsNCED4 in Arabidopsis increased ABA levels and altered plant size and leaf shape, delayed seed germination, caused sugar oversensitivity in post-germination growth, and enhanced tolerance to drought
OsNCED4	Os07g0154100	LOC_Os07g05940	 ABA 	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Like OsNCED3, OsNCED4 is functionally active in ABA biosynthesis in rice
OsNCED4	Os07g0154100	LOC_Os07g05940	 ABA 	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	 OsNCED3 and OsNCED4 might play redundant roles in controlling ABA biosynthesis in rice, as suggested by GUS staining assay, but this should be further analyzed through complementation of rice NCED knockout mutants
OsNCED4	Os07g0154100	LOC_Os07g05940	salt stress	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	 At the one-leaf stage, similar regulation of OsNCED3 and OsNCED4 gene expression in roots or leaves in response to moderate salt stress (150<U+00A0>mM NaCl) was observed
OsNCED4	Os07g0154100	LOC_Os07g05940	stress	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	 At the one-leaf stage, similar regulation of OsNCED3 and OsNCED4 gene expression in roots or leaves in response to moderate salt stress (150<U+00A0>mM NaCl) was observed
OsNCED4	Os07g0154100	LOC_Os07g05940	leaf shape	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Heterologous expression of OsNCED4 in Arabidopsis increased ABA levels and altered plant size and leaf shape, delayed seed germination, caused sugar oversensitivity in post-germination growth, and enhanced tolerance to drought
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	The 9-cis-epoxycarotenoid dioxygenases OsNCED4 was cloned from rice in conjunction with OsNCED 1-3 and 5, of which 3 has been shown to function in ABA biosynthesis and alteration of leaf morphology
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	 Thus, transgenic Arabidopsis plants overexpressing OsNCED4 were generated in the 129B08/nced3 mutant background to explore OsNCED4 function in ABA biosynthesis
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Heterologous expression of OsNCED4 in Arabidopsis increased ABA levels and altered plant size and leaf shape, delayed seed germination, caused sugar oversensitivity in post-germination growth, and enhanced tolerance to drought
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Like OsNCED3, OsNCED4 is functionally active in ABA biosynthesis in rice
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	 OsNCED3 and OsNCED4 might play redundant roles in controlling ABA biosynthesis in rice, as suggested by GUS staining assay, but this should be further analyzed through complementation of rice NCED knockout mutants
OsNCED4	Os07g0154100	LOC_Os07g05940	sugar	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Heterologous expression of OsNCED4 in Arabidopsis increased ABA levels and altered plant size and leaf shape, delayed seed germination, caused sugar oversensitivity in post-germination growth, and enhanced tolerance to drought
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA biosynthesis	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	The 9-cis-epoxycarotenoid dioxygenases OsNCED4 was cloned from rice in conjunction with OsNCED 1-3 and 5, of which 3 has been shown to function in ABA biosynthesis and alteration of leaf morphology
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA biosynthesis	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	 Thus, transgenic Arabidopsis plants overexpressing OsNCED4 were generated in the 129B08/nced3 mutant background to explore OsNCED4 function in ABA biosynthesis
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA biosynthesis	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Like OsNCED3, OsNCED4 is functionally active in ABA biosynthesis in rice
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA biosynthesis	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	 OsNCED3 and OsNCED4 might play redundant roles in controlling ABA biosynthesis in rice, as suggested by GUS staining assay, but this should be further analyzed through complementation of rice NCED knockout mutants
OsNCED4	Os07g0154100	LOC_Os07g05940	ABA	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Furthermore, Overexpression of OsABT decreased the abscisic acid (ABA) content, while downregulating the ABA synthesis genes OsNCED3 and OsNCED4 and upregulating the ABA catabolic gene OsABA8ox2
OsNCED4	Os07g0154100	LOC_Os07g05940	abscisic acid	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Furthermore, Overexpression of OsABT decreased the abscisic acid (ABA) content, while downregulating the ABA synthesis genes OsNCED3 and OsNCED4 and upregulating the ABA catabolic gene OsABA8ox2
OsNCED4	Os07g0154100	LOC_Os07g05940	 ABA 	OsABT Is Involved in Abscisic Acid Signaling Pathway and Salt Tolerance of Roots at the Rice Seedling Stage.	 Furthermore, Overexpression of OsABT decreased the abscisic acid (ABA) content, while downregulating the ABA synthesis genes OsNCED3 and OsNCED4 and upregulating the ABA catabolic gene OsABA8ox2
OsNCED5	Os12g0617400	LOC_Os12g42280	drought	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
OsNCED5	Os12g0617400	LOC_Os12g42280	ABA	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
OsNCED5	Os12g0617400	LOC_Os12g42280	leaf	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	However, OsNCED5 overexpression increased ABA level, enhanced tolerance to the stresses, and accelerated leaf senescence
OsNCED5	Os12g0617400	LOC_Os12g42280	leaf	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Additionally, ectopic expression of OsNCED5 tested in Arabidopsis thaliana altered plant size and leaf morphology and delayed seed germination and flowering time
OsNCED5	Os12g0617400	LOC_Os12g42280	leaf senescence	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	However, OsNCED5 overexpression increased ABA level, enhanced tolerance to the stresses, and accelerated leaf senescence
OsNCED5	Os12g0617400	LOC_Os12g42280	senescence	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	However, OsNCED5 overexpression increased ABA level, enhanced tolerance to the stresses, and accelerated leaf senescence
OsNCED5	Os12g0617400	LOC_Os12g42280	resistance	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Thus, OsNCED5 may regulate plant development and stress resistance through control of ABA biosynthesis
OsNCED5	Os12g0617400	LOC_Os12g42280	development	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Thus, OsNCED5 may regulate plant development and stress resistance through control of ABA biosynthesis
OsNCED5	Os12g0617400	LOC_Os12g42280	seed	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Additionally, ectopic expression of OsNCED5 tested in Arabidopsis thaliana altered plant size and leaf morphology and delayed seed germination and flowering time
OsNCED5	Os12g0617400	LOC_Os12g42280	seed germination	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Additionally, ectopic expression of OsNCED5 tested in Arabidopsis thaliana altered plant size and leaf morphology and delayed seed germination and flowering time
OsNCED5	Os12g0617400	LOC_Os12g42280	tolerance	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	However, OsNCED5 overexpression increased ABA level, enhanced tolerance to the stresses, and accelerated leaf senescence
OsNCED5	Os12g0617400	LOC_Os12g42280	abiotic stress	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Transcript analysis showed that OsNCED5 regulated ABA-dependent abiotic stress and senescence-related gene expression
OsNCED5	Os12g0617400	LOC_Os12g42280	ABA	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	However, OsNCED5 overexpression increased ABA level, enhanced tolerance to the stresses, and accelerated leaf senescence
OsNCED5	Os12g0617400	LOC_Os12g42280	ABA	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Thus, OsNCED5 may regulate plant development and stress resistance through control of ABA biosynthesis
OsNCED5	Os12g0617400	LOC_Os12g42280	stress	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Transcript analysis showed that OsNCED5 regulated ABA-dependent abiotic stress and senescence-related gene expression
OsNCED5	Os12g0617400	LOC_Os12g42280	stress	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Thus, OsNCED5 may regulate plant development and stress resistance through control of ABA biosynthesis
OsNCED5	Os12g0617400	LOC_Os12g42280	biotic stress	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Transcript analysis showed that OsNCED5 regulated ABA-dependent abiotic stress and senescence-related gene expression
OsNCED5	Os12g0617400	LOC_Os12g42280	ABA	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	However, OsNCED5 overexpression increased ABA level, enhanced tolerance to the stresses, and accelerated leaf senescence
OsNCED5	Os12g0617400	LOC_Os12g42280	ABA	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Thus, OsNCED5 may regulate plant development and stress resistance through control of ABA biosynthesis
OsNCED5	Os12g0617400	LOC_Os12g42280	plant development	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Thus, OsNCED5 may regulate plant development and stress resistance through control of ABA biosynthesis
OsNCED5	Os12g0617400	LOC_Os12g42280	flowering time	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Additionally, ectopic expression of OsNCED5 tested in Arabidopsis thaliana altered plant size and leaf morphology and delayed seed germination and flowering time
OsNCED5	Os12g0617400	LOC_Os12g42280	ABA biosynthesis	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Thus, OsNCED5 may regulate plant development and stress resistance through control of ABA biosynthesis
OsNDPK1	Os07g0492000	LOC_Os07g30970	leaf	Physiological and Biochemical Characterization of Three Nucleoside Diphosphate Kinase Isozymes from Rice (Oryza sativaL.)	Expression analysis indicated that all the OsNDPKs are expressed in the leaf, leaf sheath, and immature seeds, except for OsNDPK1, in the leaf sheath
OsNDPK1	Os07g0492000	LOC_Os07g30970	jasmonic acid	Enhanced expression of a gene encoding a nucleoside diphosphate kinase 1 (OsNDPK1) in rice plants upon infection with bacterial pathogens	OsNDPK1 gene expression was also strongly induced in response to exposure to salicylic acid, jasmonic acid, and abscisic acid, although the level of transcripts and their pattern of expression depended on the inducer
OsNDPK1	Os07g0492000	LOC_Os07g30970	mitochondria	Enhanced expression of a gene encoding a nucleoside diphosphate kinase 1 (OsNDPK1) in rice plants upon infection with bacterial pathogens	Three different programs for predicting subcellular targeting indicated that OsNDPK1 and NP922751 were non-organellar, OsNDPK2 plastidic, and OsNDPK3 mitochondrial
OsNDPK1	Os07g0492000	LOC_Os07g30970	mitochondria	Physiological and Biochemical Characterization of Three Nucleoside Diphosphate Kinase Isozymes from Rice (Oryza sativaL.)	Transient expression of green fluorescence protein-fused proteins in onion cells indicated that OsNDPK2 and OsNDPK3 are localized to plastid and mitochondria respectively, while OsNDPK1 is localized to the cytosol
OsNDPK1	Os07g0492000	LOC_Os07g30970	seed	Physiological and Biochemical Characterization of Three Nucleoside Diphosphate Kinase Isozymes from Rice (Oryza sativaL.)	Expression analysis indicated that all the OsNDPKs are expressed in the leaf, leaf sheath, and immature seeds, except for OsNDPK1, in the leaf sheath
OsNDPK1	Os07g0492000	LOC_Os07g30970	salicylic acid	Enhanced expression of a gene encoding a nucleoside diphosphate kinase 1 (OsNDPK1) in rice plants upon infection with bacterial pathogens	OsNDPK1 gene expression was also strongly induced in response to exposure to salicylic acid, jasmonic acid, and abscisic acid, although the level of transcripts and their pattern of expression depended on the inducer
OsNDPK1	Os07g0492000	LOC_Os07g30970	sheath	Physiological and Biochemical Characterization of Three Nucleoside Diphosphate Kinase Isozymes from Rice (Oryza sativaL.)	Expression analysis indicated that all the OsNDPKs are expressed in the leaf, leaf sheath, and immature seeds, except for OsNDPK1, in the leaf sheath
OsNDPK1	Os07g0492000	LOC_Os07g30970	jasmonic	Enhanced expression of a gene encoding a nucleoside diphosphate kinase 1 (OsNDPK1) in rice plants upon infection with bacterial pathogens	OsNDPK1 gene expression was also strongly induced in response to exposure to salicylic acid, jasmonic acid, and abscisic acid, although the level of transcripts and their pattern of expression depended on the inducer
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	mitochondria	Physiological and Biochemical Characterization of Three Nucleoside Diphosphate Kinase Isozymes from Rice (Oryza sativaL.)	Transient expression of green fluorescence protein-fused proteins in onion cells indicated that OsNDPK2 and OsNDPK3 are localized to plastid and mitochondria respectively, while OsNDPK1 is localized to the cytosol
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	mitochondria	Enhanced expression of a gene encoding a nucleoside diphosphate kinase 1 (OsNDPK1) in rice plants upon infection with bacterial pathogens	Three different programs for predicting subcellular targeting indicated that OsNDPK1 and NP922751 were non-organellar, OsNDPK2 plastidic, and OsNDPK3 mitochondrial
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	chloroplast	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	The WSL12 protein localized to the chloroplast
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	chloroplast	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	These results indicate that the OsNDPK2 encoded by WSL12 plays an important role in chloroplast development and chlorophyll biosynthesis by regulating the expression levels of related genes
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	development	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	These results indicate that the OsNDPK2 encoded by WSL12 plays an important role in chloroplast development and chlorophyll biosynthesis by regulating the expression levels of related genes
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	map-based cloning	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	Map-based cloning revealed that the WSL12 locus encoded OsNDPK2, one of the three nucleoside diphosphate kinases (OsNDPKs)
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	salinity	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	The wsl12 mutant showed higher superoxide anion level and enhanced sensitivity to abscisic acid (ABA) and salinity
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	salinity	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	In addition, WSL12 also affects the response to abiotic stress, such as ABA and salinity in rice, and is beneficial to molecular breeding of stress tolerance
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	tolerance	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	In addition, WSL12 also affects the response to abiotic stress, such as ABA and salinity in rice, and is beneficial to molecular breeding of stress tolerance
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	abiotic stress	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	In addition, WSL12 also affects the response to abiotic stress, such as ABA and salinity in rice, and is beneficial to molecular breeding of stress tolerance
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	ABA	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	The transcription pattern of many genes involved in chlorophyll biosynthesis, ABA synthesis, light signaling pathway, reactive oxygen species-scavenging pathway and the other two OsNDPKs was altered in the wsl12 mutant
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	ABA	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	In addition, WSL12 also affects the response to abiotic stress, such as ABA and salinity in rice, and is beneficial to molecular breeding of stress tolerance
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	stress	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	In addition, WSL12 also affects the response to abiotic stress, such as ABA and salinity in rice, and is beneficial to molecular breeding of stress tolerance
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	breeding	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	In addition, WSL12 also affects the response to abiotic stress, such as ABA and salinity in rice, and is beneficial to molecular breeding of stress tolerance
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	biotic stress	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	In addition, WSL12 also affects the response to abiotic stress, such as ABA and salinity in rice, and is beneficial to molecular breeding of stress tolerance
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	ABA	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	The transcription pattern of many genes involved in chlorophyll biosynthesis, ABA synthesis, light signaling pathway, reactive oxygen species-scavenging pathway and the other two OsNDPKs was altered in the wsl12 mutant
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	ABA	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	In addition, WSL12 also affects the response to abiotic stress, such as ABA and salinity in rice, and is beneficial to molecular breeding of stress tolerance
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	abscisic acid	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	The wsl12 mutant showed higher superoxide anion level and enhanced sensitivity to abscisic acid (ABA) and salinity
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	stress tolerance	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	In addition, WSL12 also affects the response to abiotic stress, such as ABA and salinity in rice, and is beneficial to molecular breeding of stress tolerance
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	reactive oxygen species	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	The transcription pattern of many genes involved in chlorophyll biosynthesis, ABA synthesis, light signaling pathway, reactive oxygen species-scavenging pathway and the other two OsNDPKs was altered in the wsl12 mutant
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	chloroplast development	White stripe leaf 12 (WSL12), encoding a nucleoside diphosphate kinase 2 (OsNDPK2), regulates chloroplast development and abiotic stress response in rice (Oryza sativa L.).	These results indicate that the OsNDPK2 encoded by WSL12 plays an important role in chloroplast development and chlorophyll biosynthesis by regulating the expression levels of related genes
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	leaf	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	We isolated a rice mutant named yss2 (young seedling stripe2) with a striated seedling phenotype beginning from leaf 2 of delayed plant growth
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	leaf	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Real-time RT-PCR analysis demonstrated that YSS2 transcripts accumulated highly in L4 sections at the early leaf development stage
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	seedlings	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Chlorotic yss2 seedlings have decreased pigment contents and impaired chloroplast development
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	chloroplast	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Chlorotic yss2 seedlings have decreased pigment contents and impaired chloroplast development
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	chloroplast	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Expression levels of genes associated with Chl biosynthesis and photosynthesis in yss2 were mostly decreased, but genes involved in chloroplast biogenesis were up-regulated compared to the wild type
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	chloroplast	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Our overall data suggest that YSS2 has important roles in chloroplast biogenesis
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	growth	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	We isolated a rice mutant named yss2 (young seedling stripe2) with a striated seedling phenotype beginning from leaf 2 of delayed plant growth
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	leaf development	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Real-time RT-PCR analysis demonstrated that YSS2 transcripts accumulated highly in L4 sections at the early leaf development stage
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	seedling	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	We isolated a rice mutant named yss2 (young seedling stripe2) with a striated seedling phenotype beginning from leaf 2 of delayed plant growth
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	development	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Chlorotic yss2 seedlings have decreased pigment contents and impaired chloroplast development
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	development	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Real-time RT-PCR analysis demonstrated that YSS2 transcripts accumulated highly in L4 sections at the early leaf development stage
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	photosynthesis	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Expression levels of genes associated with Chl biosynthesis and photosynthesis in yss2 were mostly decreased, but genes involved in chloroplast biogenesis were up-regulated compared to the wild type
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	Chl biosynthesis	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Expression levels of genes associated with Chl biosynthesis and photosynthesis in yss2 were mostly decreased, but genes involved in chloroplast biogenesis were up-regulated compared to the wild type
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	Kinase	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	The YSS2 allele encodes a NDPK2 (nucleoside diphosphate kinase 2) protein showing high similarity to other types of NDPKs
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	chloroplast development	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Chlorotic yss2 seedlings have decreased pigment contents and impaired chloroplast development
OsNDPK2|WSL12|YSS2	Os12g0548300	LOC_Os12g36194	plant growth	A Young Seedling Stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	We isolated a rice mutant named yss2 (young seedling stripe2) with a striated seedling phenotype beginning from leaf 2 of delayed plant growth
OsNDPK3	Os05g0595400	LOC_Os05g51700	mitochondria	Enhanced expression of a gene encoding a nucleoside diphosphate kinase 1 (OsNDPK1) in rice plants upon infection with bacterial pathogens	Three different programs for predicting subcellular targeting indicated that OsNDPK1 and NP922751 were non-organellar, OsNDPK2 plastidic, and OsNDPK3 mitochondrial
OsNDPK3	Os05g0595400	LOC_Os05g51700	mitochondria	Physiological and Biochemical Characterization of Three Nucleoside Diphosphate Kinase Isozymes from Rice (Oryza sativaL.)	Transient expression of green fluorescence protein-fused proteins in onion cells indicated that OsNDPK2 and OsNDPK3 are localized to plastid and mitochondria respectively, while OsNDPK1 is localized to the cytosol
OsNDPK4	Os10g0563700	LOC_Os10g41410	root	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).
OsNDPK4	Os10g0563700	LOC_Os10g41410	root	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Dysfunctional mutation of OsNDPK4 resulted in severe defects in root development of rice
OsNDPK4	Os10g0563700	LOC_Os10g41410	root	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	The rice mutant Osndpk4 showed severe defects in root development from the early seedling stage
OsNDPK4	Os10g0563700	LOC_Os10g41410	resistance	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	However, the resistance of Osndpk4 against bacterial blight was significantly enhanced
OsNDPK4	Os10g0563700	LOC_Os10g41410	resistance	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Osndpk4 showed enhanced resistance to the bacterial pathogen Xanthomonas oryzae pv
OsNDPK4	Os10g0563700	LOC_Os10g41410	development	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).
OsNDPK4	Os10g0563700	LOC_Os10g41410	development	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Dysfunctional mutation of OsNDPK4 resulted in severe defects in root development of rice
OsNDPK4	Os10g0563700	LOC_Os10g41410	development	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	The rice mutant Osndpk4 showed severe defects in root development from the early seedling stage
OsNDPK4	Os10g0563700	LOC_Os10g41410	development	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Our results demonstrate that OsNDPK4 plays important roles in energy homeostasis, development process, and defense responses in rice
OsNDPK4	Os10g0563700	LOC_Os10g41410	seedling	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	The rice mutant Osndpk4 showed severe defects in root development from the early seedling stage
OsNDPK4	Os10g0563700	LOC_Os10g41410	blight	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	However, the resistance of Osndpk4 against bacterial blight was significantly enhanced
OsNDPK4	Os10g0563700	LOC_Os10g41410	bacterial blight	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	However, the resistance of Osndpk4 against bacterial blight was significantly enhanced
OsNDPK4	Os10g0563700	LOC_Os10g41410	defense	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).
OsNDPK4	Os10g0563700	LOC_Os10g41410	defense	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Detailed analysis revealed that the dysfunction of OsNDPK4 might reorchestrate energy homeostasis and hormone metabolism and signalling, resulting in repression of translation, DNA replication and cell cycle progression, and priming of biotic stress defense
OsNDPK4	Os10g0563700	LOC_Os10g41410	defense	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Our results demonstrate that OsNDPK4 plays important roles in energy homeostasis, development process, and defense responses in rice
OsNDPK4	Os10g0563700	LOC_Os10g41410	map-based cloning	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Map-based cloning identified that the mutation occurred in the OsNDPK4 gene
OsNDPK4	Os10g0563700	LOC_Os10g41410	defense response	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).
OsNDPK4	Os10g0563700	LOC_Os10g41410	defense response	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Our results demonstrate that OsNDPK4 plays important roles in energy homeostasis, development process, and defense responses in rice
OsNDPK4	Os10g0563700	LOC_Os10g41410	root development	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).
OsNDPK4	Os10g0563700	LOC_Os10g41410	root development	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Dysfunctional mutation of OsNDPK4 resulted in severe defects in root development of rice
OsNDPK4	Os10g0563700	LOC_Os10g41410	root development	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	The rice mutant Osndpk4 showed severe defects in root development from the early seedling stage
OsNDPK4	Os10g0563700	LOC_Os10g41410	stress	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	In addition, transcriptomic analysis showed that OsNDPK4 was significantly associated with a number of biological processes, including translation, protein modification, metabolism, biotic stress response, etc
OsNDPK4	Os10g0563700	LOC_Os10g41410	stress	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Detailed analysis revealed that the dysfunction of OsNDPK4 might reorchestrate energy homeostasis and hormone metabolism and signalling, resulting in repression of translation, DNA replication and cell cycle progression, and priming of biotic stress defense
OsNDPK4	Os10g0563700	LOC_Os10g41410	pathogen	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Osndpk4 showed enhanced resistance to the bacterial pathogen Xanthomonas oryzae pv
OsNDPK4	Os10g0563700	LOC_Os10g41410	homeostasis	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Detailed analysis revealed that the dysfunction of OsNDPK4 might reorchestrate energy homeostasis and hormone metabolism and signalling, resulting in repression of translation, DNA replication and cell cycle progression, and priming of biotic stress defense
OsNDPK4	Os10g0563700	LOC_Os10g41410	biotic stress	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	In addition, transcriptomic analysis showed that OsNDPK4 was significantly associated with a number of biological processes, including translation, protein modification, metabolism, biotic stress response, etc
OsNDPK4	Os10g0563700	LOC_Os10g41410	biotic stress	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Detailed analysis revealed that the dysfunction of OsNDPK4 might reorchestrate energy homeostasis and hormone metabolism and signalling, resulting in repression of translation, DNA replication and cell cycle progression, and priming of biotic stress defense
OsNDPK4	Os10g0563700	LOC_Os10g41410	cell cycle	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	Detailed analysis revealed that the dysfunction of OsNDPK4 might reorchestrate energy homeostasis and hormone metabolism and signalling, resulting in repression of translation, DNA replication and cell cycle progression, and priming of biotic stress defense
OsNDPK4	Os10g0563700	LOC_Os10g41410	Kinase	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).
OsNDPK4	Os10g0563700	LOC_Os10g41410	kinase	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).
OsNDPK4	Os10g0563700	LOC_Os10g41410	stress response	A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).	In addition, transcriptomic analysis showed that OsNDPK4 was significantly associated with a number of biological processes, including translation, protein modification, metabolism, biotic stress response, etc
OsNDUFA9|FLO13	Os02g0816800	LOC_Os02g57180	development	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.
OsNDUFA9|FLO13	Os02g0816800	LOC_Os02g57180	development	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.	Our results demonstrate that the OsNDUFA9 subunit of complex I is essential for embryo development and starch synthesis in rice endosperm
OsNDUFA9|FLO13	Os02g0816800	LOC_Os02g57180	starch	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.
OsNDUFA9|FLO13	Os02g0816800	LOC_Os02g57180	starch	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.	Our results demonstrate that the OsNDUFA9 subunit of complex I is essential for embryo development and starch synthesis in rice endosperm
OsNDUFA9|FLO13	Os02g0816800	LOC_Os02g57180	mitochondria	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.	OsNDUFA9 was ubiquitously expressed in various tissues and the OsNDUFA9 protein was localized to the mitochondria
OsNDUFA9|FLO13	Os02g0816800	LOC_Os02g57180	mitochondria	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.	Quantitative RT-PCR and protein blotting indicated loss of function of OsNDUFA9 altered gene expression and protein accumulation associated with respiratory electron chain complex in the mitochondria
OsNDUFA9|FLO13	Os02g0816800	LOC_Os02g57180	endosperm	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.	Our results demonstrate that the OsNDUFA9 subunit of complex I is essential for embryo development and starch synthesis in rice endosperm
OsNek3	Os07g0176600	LOC_Os07g08000	cell wall	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	On the other hand, plants overexpressing OsNek3 occasionally produced a peculiar pollen structure in which the outer cell wall of four pollen grains fused together even at the mature pollen stages, which resembled that of quartet mutants in Arabidopsis
OsNek3	Os07g0176600	LOC_Os07g08000	pollen	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	OsNek3 was preferentially expressed in mature pollen
OsNek3	Os07g0176600	LOC_Os07g08000	pollen	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	A knockout mutant with Tos17 inserted into OsNek3 did not show any pollen-defective phenotype
OsNek3	Os07g0176600	LOC_Os07g08000	pollen	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	On the other hand, plants overexpressing OsNek3 occasionally produced a peculiar pollen structure in which the outer cell wall of four pollen grains fused together even at the mature pollen stages, which resembled that of quartet mutants in Arabidopsis
OsNek3	Os07g0176600	LOC_Os07g08000	pollen	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	OsNek3 was shown to interact with a LIM domain-containing protein, OsPLIM2b, whose expression was strongly specific in mature pollen, suggesting that OsNek3 might play a role in pollen germination
OsNek3	Os07g0176600	LOC_Os07g08000	sterility	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11
OsNek3	Os07g0176600	LOC_Os07g08000	mitochondria	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	These results suggest that OsNek3 is downstream of DCW11 in retrograde signaling from the mitochondria to the nucleus and is involved in CW-CMS
OsNek3	Os07g0176600	LOC_Os07g08000	mitochondria	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11
OsNek3	Os07g0176600	LOC_Os07g08000	grain	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	On the other hand, plants overexpressing OsNek3 occasionally produced a peculiar pollen structure in which the outer cell wall of four pollen grains fused together even at the mature pollen stages, which resembled that of quartet mutants in Arabidopsis
OsNF-YA3	Os03g0647600	LOC_Os03g44540	transcription factor	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Collectively, our findings establish OsNF-YA3 as an important transcription factor that positively modulates GA-regulated plant growth and negatively controls ABA-mediated water-deficit and salt tolerance
OsNF-YA3	Os03g0647600	LOC_Os03g44540	growth	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.
OsNF-YA3	Os03g0647600	LOC_Os03g44540	growth	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 OsNF-YA3 loss-of-function mutants exhibit stunted growth, compromised GA biosynthetic gene expression, and decreased GA levels, while its overexpression lines have promoted growth and enhanced GA content
OsNF-YA3	Os03g0647600	LOC_Os03g44540	growth	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Collectively, our findings establish OsNF-YA3 as an important transcription factor that positively modulates GA-regulated plant growth and negatively controls ABA-mediated water-deficit and salt tolerance
OsNF-YA3	Os03g0647600	LOC_Os03g44540	Kinase	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Furthermore, OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9), the positive component in ABA signaling, interacts with OsNF-YA3 and mediates OsNF-YA3 phosphorylation, resulting in its degradation in plants
OsNF-YA3	Os03g0647600	LOC_Os03g44540	kinase	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Furthermore, OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9), the positive component in ABA signaling, interacts with OsNF-YA3 and mediates OsNF-YA3 phosphorylation, resulting in its degradation in plants
OsNF-YA3	Os03g0647600	LOC_Os03g44540	stress	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.
OsNF-YA3	Os03g0647600	LOC_Os03g44540	stress	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 On the other side, OsNF-YA3 negatively regulates plant osmotic stress tolerance by repressing ABA response
OsNF-YA3	Os03g0647600	LOC_Os03g44540	salt	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Collectively, our findings establish OsNF-YA3 as an important transcription factor that positively modulates GA-regulated plant growth and negatively controls ABA-mediated water-deficit and salt tolerance
OsNF-YA3	Os03g0647600	LOC_Os03g44540	tolerance	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.
OsNF-YA3	Os03g0647600	LOC_Os03g44540	tolerance	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 On the other side, OsNF-YA3 negatively regulates plant osmotic stress tolerance by repressing ABA response
OsNF-YA3	Os03g0647600	LOC_Os03g44540	tolerance	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Collectively, our findings establish OsNF-YA3 as an important transcription factor that positively modulates GA-regulated plant growth and negatively controls ABA-mediated water-deficit and salt tolerance
OsNF-YA3	Os03g0647600	LOC_Os03g44540	ABA	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 On the other side, OsNF-YA3 negatively regulates plant osmotic stress tolerance by repressing ABA response
OsNF-YA3	Os03g0647600	LOC_Os03g44540	ABA	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 OsNF-YA3 reduces ABA levels by transcriptionally regulating ABA catabolic genes OsABA8ox1 and OsABA8ox3 by binding to their promoters
OsNF-YA3	Os03g0647600	LOC_Os03g44540	ABA	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Furthermore, OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9), the positive component in ABA signaling, interacts with OsNF-YA3 and mediates OsNF-YA3 phosphorylation, resulting in its degradation in plants
OsNF-YA3	Os03g0647600	LOC_Os03g44540	salt tolerance	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Collectively, our findings establish OsNF-YA3 as an important transcription factor that positively modulates GA-regulated plant growth and negatively controls ABA-mediated water-deficit and salt tolerance
OsNF-YA3	Os03g0647600	LOC_Os03g44540	stress tolerance	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.
OsNF-YA3	Os03g0647600	LOC_Os03g44540	stress tolerance	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 On the other side, OsNF-YA3 negatively regulates plant osmotic stress tolerance by repressing ABA response
OsNF-YA3	Os03g0647600	LOC_Os03g44540	plant growth	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.
OsNF-YA3	Os03g0647600	LOC_Os03g44540	plant growth	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Collectively, our findings establish OsNF-YA3 as an important transcription factor that positively modulates GA-regulated plant growth and negatively controls ABA-mediated water-deficit and salt tolerance
OsNF-YA3	Os03g0647600	LOC_Os03g44540	ga	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 OsNF-YA3 loss-of-function mutants exhibit stunted growth, compromised GA biosynthetic gene expression, and decreased GA levels, while its overexpression lines have promoted growth and enhanced GA content
OsNF-YA3	Os03g0647600	LOC_Os03g44540	ga	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Chromatin immunoprecipitation-quantitative polymerase chain reaction analysis and transient transcriptional regulation assays demonstrate that OsNF-YA3 activates GA biosynthetic gene OsGA20ox1 expression
OsNF-YA3	Os03g0647600	LOC_Os03g44540	 ga 	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 OsNF-YA3 loss-of-function mutants exhibit stunted growth, compromised GA biosynthetic gene expression, and decreased GA levels, while its overexpression lines have promoted growth and enhanced GA content
OsNF-YA3	Os03g0647600	LOC_Os03g44540	 ga 	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Chromatin immunoprecipitation-quantitative polymerase chain reaction analysis and transient transcriptional regulation assays demonstrate that OsNF-YA3 activates GA biosynthetic gene OsGA20ox1 expression
OsNF-YA3	Os03g0647600	LOC_Os03g44540	protein kinase	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Furthermore, OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9), the positive component in ABA signaling, interacts with OsNF-YA3 and mediates OsNF-YA3 phosphorylation, resulting in its degradation in plants
OsNF-YA3	Os03g0647600	LOC_Os03g44540	GA	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 OsNF-YA3 loss-of-function mutants exhibit stunted growth, compromised GA biosynthetic gene expression, and decreased GA levels, while its overexpression lines have promoted growth and enhanced GA content
OsNF-YA3	Os03g0647600	LOC_Os03g44540	GA	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Chromatin immunoprecipitation-quantitative polymerase chain reaction analysis and transient transcriptional regulation assays demonstrate that OsNF-YA3 activates GA biosynthetic gene OsGA20ox1 expression
OsNF-YA3	Os03g0647600	LOC_Os03g44540	GA biosynthetic	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 OsNF-YA3 loss-of-function mutants exhibit stunted growth, compromised GA biosynthetic gene expression, and decreased GA levels, while its overexpression lines have promoted growth and enhanced GA content
OsNF-YA3	Os03g0647600	LOC_Os03g44540	GA biosynthetic	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Chromatin immunoprecipitation-quantitative polymerase chain reaction analysis and transient transcriptional regulation assays demonstrate that OsNF-YA3 activates GA biosynthetic gene OsGA20ox1 expression
OsNF-YA3	Os03g0647600	LOC_Os03g44540	 ABA 	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 On the other side, OsNF-YA3 negatively regulates plant osmotic stress tolerance by repressing ABA response
OsNF-YA3	Os03g0647600	LOC_Os03g44540	 ABA 	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 OsNF-YA3 reduces ABA levels by transcriptionally regulating ABA catabolic genes OsABA8ox1 and OsABA8ox3 by binding to their promoters
OsNF-YA3	Os03g0647600	LOC_Os03g44540	 ABA 	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Furthermore, OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9), the positive component in ABA signaling, interacts with OsNF-YA3 and mediates OsNF-YA3 phosphorylation, resulting in its degradation in plants
OsNF-YA3	Os03g0647600	LOC_Os03g44540	osmotic stress	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.
OsNF-YA3	Os03g0647600	LOC_Os03g44540	osmotic stress	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 On the other side, OsNF-YA3 negatively regulates plant osmotic stress tolerance by repressing ABA response
OsNF-YA3	Os03g0647600	LOC_Os03g44540	osmotic stress	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	 Furthermore, OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9), the positive component in ABA signaling, interacts with OsNF-YA3 and mediates OsNF-YA3 phosphorylation, resulting in its degradation in plants
OsNF-YA4	Os03g0696300	LOC_Os03g48970	drought	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	In contrast, OsNF-YA4 expression was not increased by drought stress and its overexpression in transgenic rice plants did not affect their sensitivity to drought stress
OsNF-YA4	Os03g0696300	LOC_Os03g48970	drought	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	OsNF-YA4 expression was highly induced by the stress-related hormone abscisic acid (ABA), while OsNF-YA7 was not, indicating that OsNF-YA7 mediates drought tolerance in an ABA-independent manner
OsNF-YA4	Os03g0696300	LOC_Os03g48970	tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	OsNF-YA4 expression was highly induced by the stress-related hormone abscisic acid (ABA), while OsNF-YA7 was not, indicating that OsNF-YA7 mediates drought tolerance in an ABA-independent manner
OsNF-YA4	Os03g0696300	LOC_Os03g48970	drought tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	OsNF-YA4 expression was highly induced by the stress-related hormone abscisic acid (ABA), while OsNF-YA7 was not, indicating that OsNF-YA7 mediates drought tolerance in an ABA-independent manner
OsNF-YA4	Os03g0696300	LOC_Os03g48970	stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	In contrast, OsNF-YA4 expression was not increased by drought stress and its overexpression in transgenic rice plants did not affect their sensitivity to drought stress
OsNF-YA4	Os03g0696300	LOC_Os03g48970	drought stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	In contrast, OsNF-YA4 expression was not increased by drought stress and its overexpression in transgenic rice plants did not affect their sensitivity to drought stress
OsNF-YA4	Os03g0696300	LOC_Os03g48970	drought stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	In contrast, OsNF-YA4 expression was not increased by drought stress and its overexpression in transgenic rice plants did not affect their sensitivity to drought stress
OsNF-YA4	Os03g0696300	LOC_Os03g48970	abscisic acid	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	OsNF-YA4 expression was highly induced by the stress-related hormone abscisic acid (ABA), while OsNF-YA7 was not, indicating that OsNF-YA7 mediates drought tolerance in an ABA-independent manner
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Expression of OsNF-YA7 was induced by drought stress and its overexpression in transgenic rice plants improved their drought tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	OsNF-YA4 expression was highly induced by the stress-related hormone abscisic acid (ABA), while OsNF-YA7 was not, indicating that OsNF-YA7 mediates drought tolerance in an ABA-independent manner
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Analysis of the OsNF-YA7 promoter revealed three ABA-independent DRE/CTR elements and RNA-seq analysis identified 48 genes downstream of OsNFYA7 action putatively involved in the OsNF-YA7-mediated drought tolerance pathway
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Taken together, our results suggest an important role for OsNF-YA7 in rice drought stress tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
OsNF-YA7	Os08g0196700	LOC_Os08g09690	tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Expression of OsNF-YA7 was induced by drought stress and its overexpression in transgenic rice plants improved their drought tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	OsNF-YA4 expression was highly induced by the stress-related hormone abscisic acid (ABA), while OsNF-YA7 was not, indicating that OsNF-YA7 mediates drought tolerance in an ABA-independent manner
OsNF-YA7	Os08g0196700	LOC_Os08g09690	tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Analysis of the OsNF-YA7 promoter revealed three ABA-independent DRE/CTR elements and RNA-seq analysis identified 48 genes downstream of OsNFYA7 action putatively involved in the OsNF-YA7-mediated drought tolerance pathway
OsNF-YA7	Os08g0196700	LOC_Os08g09690	tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Taken together, our results suggest an important role for OsNF-YA7 in rice drought stress tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	transcription factor	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Expression of OsNF-YA7 was induced by drought stress and its overexpression in transgenic rice plants improved their drought tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	OsNF-YA4 expression was highly induced by the stress-related hormone abscisic acid (ABA), while OsNF-YA7 was not, indicating that OsNF-YA7 mediates drought tolerance in an ABA-independent manner
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Analysis of the OsNF-YA7 promoter revealed three ABA-independent DRE/CTR elements and RNA-seq analysis identified 48 genes downstream of OsNFYA7 action putatively involved in the OsNF-YA7-mediated drought tolerance pathway
OsNF-YA7	Os08g0196700	LOC_Os08g09690	stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
OsNF-YA7	Os08g0196700	LOC_Os08g09690	stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Expression of OsNF-YA7 was induced by drought stress and its overexpression in transgenic rice plants improved their drought tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Taken together, our results suggest an important role for OsNF-YA7 in rice drought stress tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Expression of OsNF-YA7 was induced by drought stress and its overexpression in transgenic rice plants improved their drought tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Taken together, our results suggest an important role for OsNF-YA7 in rice drought stress tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Expression of OsNF-YA7 was induced by drought stress and its overexpression in transgenic rice plants improved their drought tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	drought stress	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Taken together, our results suggest an important role for OsNF-YA7 in rice drought stress tolerance
OsNF-YA7	Os08g0196700	LOC_Os08g09690	abscisic acid	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
OsNF-YA7	Os08g0196700	LOC_Os08g09690	abscisic acid	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	OsNF-YA4 expression was highly induced by the stress-related hormone abscisic acid (ABA), while OsNF-YA7 was not, indicating that OsNF-YA7 mediates drought tolerance in an ABA-independent manner
OsNF-YA7	Os08g0196700	LOC_Os08g09690	stress tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
OsNF-YA7	Os08g0196700	LOC_Os08g09690	stress tolerance	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Taken together, our results suggest an important role for OsNF-YA7 in rice drought stress tolerance
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Transcriptional profiling and promoter analysis revealed that OsNF-YB1 was highly expressed at the early stages of rice endosperm development (5-7 DAP, days after pollination)
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Repression of OsNF-YB1 resulted in differential expression of the genes in cell cycle pathway, which caused abnormal seeds with defected embryo and endosperm
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Basic cytological analysis demonstrated that the reduced endosperm cell numbers disintegrated with the development of those abnormal seeds in OsNF-YB1 RNAi plants
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Taken together, these results suggested that the endosperm-specific gene OsNF-YB1 might be a cell cycle regulator and played a role in maintaining the endosperm cell proliferation
OsNF-YB1	Os02g0725900	LOC_Os02g49410	cell cycle	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Repression of OsNF-YB1 resulted in differential expression of the genes in cell cycle pathway, which caused abnormal seeds with defected embryo and endosperm
OsNF-YB1	Os02g0725900	LOC_Os02g49410	cell cycle	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Taken together, these results suggested that the endosperm-specific gene OsNF-YB1 might be a cell cycle regulator and played a role in maintaining the endosperm cell proliferation
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm development	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Transcriptional profiling and promoter analysis revealed that OsNF-YB1 was highly expressed at the early stages of rice endosperm development (5-7 DAP, days after pollination)
OsNF-YB1	Os02g0725900	LOC_Os02g49410	development	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Transcriptional profiling and promoter analysis revealed that OsNF-YB1 was highly expressed at the early stages of rice endosperm development (5-7 DAP, days after pollination)
OsNF-YB1	Os02g0725900	LOC_Os02g49410	development	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Basic cytological analysis demonstrated that the reduced endosperm cell numbers disintegrated with the development of those abnormal seeds in OsNF-YB1 RNAi plants
OsNF-YB1	Os02g0725900	LOC_Os02g49410	sucrose transporter	NF-YB1-regulated expression of sucrose transporters in aleurone facilitates sugar loading to rice endosperm	NF-YB1-regulated expression of sucrose transporters in aleurone facilitates sugar loading to rice endosperm
OsNF-YB1	Os02g0725900	LOC_Os02g49410	sugar	NF-YB1-regulated expression of sucrose transporters in aleurone facilitates sugar loading to rice endosperm	NF-YB1-regulated expression of sucrose transporters in aleurone facilitates sugar loading to rice endosperm
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm	NF-YB1-regulated expression of sucrose transporters in aleurone facilitates sugar loading to rice endosperm	NF-YB1-regulated expression of sucrose transporters in aleurone facilitates sugar loading to rice endosperm
OsNF-YB1	Os02g0725900	LOC_Os02g49410	grain	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.
OsNF-YB1	Os02g0725900	LOC_Os02g49410	grain	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Knockdown of OsNF-YB1 expression by RNAi significantly retarded grain filling, leading to small grains with chalky endosperm as well as altered starch quality
OsNF-YB1	Os02g0725900	LOC_Os02g49410	grain	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	RNA sequencing analysis revealed that genes related to membrane transport and ATP biosynthesis were enriched in the down-regulated category in OsNF-YB1 RNAi plants, which is consistent with the crucial role of OsNF-YB1 in rice grain filling and endosperm development
OsNF-YB1	Os02g0725900	LOC_Os02g49410	development	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.
OsNF-YB1	Os02g0725900	LOC_Os02g49410	development	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	RNA sequencing analysis revealed that genes related to membrane transport and ATP biosynthesis were enriched in the down-regulated category in OsNF-YB1 RNAi plants, which is consistent with the crucial role of OsNF-YB1 in rice grain filling and endosperm development
OsNF-YB1	Os02g0725900	LOC_Os02g49410	development	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	It is proposed that OsNF-YB1 specifically regulate the transcription of downstream genes during rice endosperm development by forming protein complexes consisting of OsNF-YB1, OsNF-YC and ERF, providing informative insights into the molecular functional mechanisms of the NF-Y factor
OsNF-YB1	Os02g0725900	LOC_Os02g49410	starch	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Knockdown of OsNF-YB1 expression by RNAi significantly retarded grain filling, leading to small grains with chalky endosperm as well as altered starch quality
OsNF-YB1	Os02g0725900	LOC_Os02g49410	transcription factor	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.
OsNF-YB1	Os02g0725900	LOC_Os02g49410	transcription factor	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Interestingly, different from the binding sites reported for other NF-Y complexes, the GCC box, the binding motif of ERF transcription factors, was enriched in the binding peaks of OsNF-YB1
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Knockdown of OsNF-YB1 expression by RNAi significantly retarded grain filling, leading to small grains with chalky endosperm as well as altered starch quality
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	RNA sequencing analysis revealed that genes related to membrane transport and ATP biosynthesis were enriched in the down-regulated category in OsNF-YB1 RNAi plants, which is consistent with the crucial role of OsNF-YB1 in rice grain filling and endosperm development
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	It is proposed that OsNF-YB1 specifically regulate the transcription of downstream genes during rice endosperm development by forming protein complexes consisting of OsNF-YB1, OsNF-YC and ERF, providing informative insights into the molecular functional mechanisms of the NF-Y factor
OsNF-YB1	Os02g0725900	LOC_Os02g49410	nucleus	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Whereas OsNF-YB1 shows subcellular localization in both the cytosol and the nucleus in roots, it was specifically targeted to the nucleus of aleurone layer cells, which was facilitated by interacting with OsNF-YC proteins preferentially expressed in the aleurone layer
OsNF-YB1	Os02g0725900	LOC_Os02g49410	grain filling	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.
OsNF-YB1	Os02g0725900	LOC_Os02g49410	grain filling	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Knockdown of OsNF-YB1 expression by RNAi significantly retarded grain filling, leading to small grains with chalky endosperm as well as altered starch quality
OsNF-YB1	Os02g0725900	LOC_Os02g49410	grain filling	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	RNA sequencing analysis revealed that genes related to membrane transport and ATP biosynthesis were enriched in the down-regulated category in OsNF-YB1 RNAi plants, which is consistent with the crucial role of OsNF-YB1 in rice grain filling and endosperm development
OsNF-YB1	Os02g0725900	LOC_Os02g49410	sugar	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Identification of the genome-wide targets of OsNF-YB1 by ChIP sequencing showed that OsNF-YB1 directly regulates genes involved in the transport of nutrients such as sugar and amino acids
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm development	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm development	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	RNA sequencing analysis revealed that genes related to membrane transport and ATP biosynthesis were enriched in the down-regulated category in OsNF-YB1 RNAi plants, which is consistent with the crucial role of OsNF-YB1 in rice grain filling and endosperm development
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm development	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	It is proposed that OsNF-YB1 specifically regulate the transcription of downstream genes during rice endosperm development by forming protein complexes consisting of OsNF-YB1, OsNF-YC and ERF, providing informative insights into the molecular functional mechanisms of the NF-Y factor
OsNF-YB1	Os02g0725900	LOC_Os02g49410	quality	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	Knockdown of OsNF-YB1 expression by RNAi significantly retarded grain filling, leading to small grains with chalky endosperm as well as altered starch quality
OsNF-YB1	Os02g0725900	LOC_Os02g49410	seed size	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa)	Seeds of osnf-yb1 and osbzip76 mutants showed reduced size and reduced apparent amylose content.
OsNF-YB1	Os02g0725900	LOC_Os02g49410	amylose content	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa)	Seeds of osnf-yb1 and osbzip76 mutants showed reduced size and reduced apparent amylose content.
OsNF-YB1	Os02g0725900	LOC_Os02g49410	endosperm cellularization	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa)	Seeds of osnf-yb1 and osbzip76 mutants showed reduced size and reduced apparent amylose content.
OsNF-YB1	Os02g0725900	LOC_Os02g49410	auxin	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells	Suppression of RGB1 expression also resulted in the lower auxin content in grains, which was correlated with the lower expression of OsNF-YB1 and OsYUC11 during grain filling stage
OsNF-YB1	Os02g0725900	LOC_Os02g49410	grain	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells	Suppression of RGB1 expression also resulted in the lower auxin content in grains, which was correlated with the lower expression of OsNF-YB1 and OsYUC11 during grain filling stage
OsNF-YB1	Os02g0725900	LOC_Os02g49410	grain filling	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells	Suppression of RGB1 expression also resulted in the lower auxin content in grains, which was correlated with the lower expression of OsNF-YB1 and OsYUC11 during grain filling stage
OsNF-YB9	Os06g0285200	LOC_Os06g17480	transcription factor	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.
OsNF-YB9	Os06g0285200	LOC_Os06g17480	growth	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.
OsNF-YB9	Os06g0285200	LOC_Os06g17480	development	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.
OsNF-YB9	Os06g0285200	LOC_Os06g17480	development	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	OsNF-YB9 interacted with MADS1, a key regulator of floral development
OsNF-YB9	Os06g0285200	LOC_Os06g17480	floral	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	OsNF-YB9 interacted with MADS1, a key regulator of floral development
OsNF-YB9	Os06g0285200	LOC_Os06g17480	reproductive	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.
OsNF-YB9	Os06g0285200	LOC_Os06g17480	reproductive	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	OsNF-YB9 overexpression also resulted in morphological defects in the reproductive organs and led to pseudovivipary
OsNF-YB9	Os06g0285200	LOC_Os06g17480	heading date	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	OsNF-YB9 delayed the heading date when ectopically expressed in rice
OsNF-YB9	Os06g0285200	LOC_Os06g17480	reproductive growth	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.
OsNF-YB9	Os06g0285200	LOC_Os06g17480	endosperm cellularization	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa)	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa)
OsNF-YC10	None	LOC_Os01g24460	spikelet	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	qRT-PCR and mRNA in situ hybridization analysis revealed that OsNF-YC10 was highly expressed in endosperm and spikelet hull at late developmental stages
OsNF-YC10	None	LOC_Os01g24460	spikelet	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	Cytological experiments revealed significantly reduced cell number of spikelet hull in osnf-yc10 lines compared with that in WT
OsNF-YC10	None	LOC_Os01g24460	spikelet	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	Taken together, it is suggested that OsNF-YC10 regulates the grains size and shape by influencing the cell proliferation of spikelet hulls
OsNF-YC10	None	LOC_Os01g24460	grain	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	These results indicated that OsNF-YC10 plays an important role in determining grain size and shape
OsNF-YC10	None	LOC_Os01g24460	grain	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	OsNF-YC10 was further revealed to influence the expression of GW8 (a positive regulator of grain width), GW7 (a negative regulator of grain width) and cell cycle-regulated genes CYCD4, CYCA2
OsNF-YC10	None	LOC_Os01g24460	grain size	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	These results indicated that OsNF-YC10 plays an important role in determining grain size and shape
OsNF-YC10	None	LOC_Os01g24460	endosperm	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	qRT-PCR and mRNA in situ hybridization analysis revealed that OsNF-YC10 was highly expressed in endosperm and spikelet hull at late developmental stages
OsNF-YC10	None	LOC_Os01g24460	cell cycle	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	OsNF-YC10 was further revealed to influence the expression of GW8 (a positive regulator of grain width), GW7 (a negative regulator of grain width) and cell cycle-regulated genes CYCD4, CYCA2
OsNF-YC10	None	LOC_Os01g24460	R protein	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	The results showed that OsNF-YC10 was a nuclear protein showing transcription activation activity
OsNF-YC10	None	LOC_Os01g24460	cell proliferation	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	Taken together, it is suggested that OsNF-YC10 regulates the grains size and shape by influencing the cell proliferation of spikelet hulls
OsNF-YC10	None	LOC_Os01g24460	grain width	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	OsNF-YC10 was further revealed to influence the expression of GW8 (a positive regulator of grain width), GW7 (a negative regulator of grain width) and cell cycle-regulated genes CYCD4, CYCA2
OsNF-YC13	Os01g0183400	LOC_Os01g08790	transcription factor	Activation-tagging in indica rice identifies a novel transcription factor subunit, NF-YC13 associated with salt tolerance.	Now, we screened 927 seeds from 70 Ac/Ds plants for salinity tolerance and identified one activation-tagged salt tolerant DS plant (DS-16, T3 generation) that showed enhanced expression of a novel 'histone-like transcription factor' belonging to rice NF-Y subfamily C and was named as OsNF-YC13
OsNF-YC13	Os01g0183400	LOC_Os01g08790	salinity	Activation-tagging in indica rice identifies a novel transcription factor subunit, NF-YC13 associated with salt tolerance.	Now, we screened 927 seeds from 70 Ac/Ds plants for salinity tolerance and identified one activation-tagged salt tolerant DS plant (DS-16, T3 generation) that showed enhanced expression of a novel 'histone-like transcription factor' belonging to rice NF-Y subfamily C and was named as OsNF-YC13
OsNF-YC13	Os01g0183400	LOC_Os01g08790	salt	Activation-tagging in indica rice identifies a novel transcription factor subunit, NF-YC13 associated with salt tolerance.	Now, we screened 927 seeds from 70 Ac/Ds plants for salinity tolerance and identified one activation-tagged salt tolerant DS plant (DS-16, T3 generation) that showed enhanced expression of a novel 'histone-like transcription factor' belonging to rice NF-Y subfamily C and was named as OsNF-YC13
OsNF-YC13	Os01g0183400	LOC_Os01g08790	salt	Activation-tagging in indica rice identifies a novel transcription factor subunit, NF-YC13 associated with salt tolerance.	Real time expression analysis confirmed upregulation of transcript levels of OsNF-YC13 during salt treatment in a tissue specific manner
OsNF-YC13	Os01g0183400	LOC_Os01g08790	tolerance	Activation-tagging in indica rice identifies a novel transcription factor subunit, NF-YC13 associated with salt tolerance.	Now, we screened 927 seeds from 70 Ac/Ds plants for salinity tolerance and identified one activation-tagged salt tolerant DS plant (DS-16, T3 generation) that showed enhanced expression of a novel 'histone-like transcription factor' belonging to rice NF-Y subfamily C and was named as OsNF-YC13
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	transporter	Conservation of the salt overly sensitive pathway in rice	The rice transporter, denoted by OsSOS1, demonstrated a capacity for Na+/H+ exchange in plasma membrane vesicles of yeast (Saccharomyces cerevisiae) cells and reduced their net cellular Na+ content
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	salt	Isolation and characterization of a new Na+/H+ antiporter gene OsNHA1 from rice (Oryza sativa L.)	The semi-quantitative RT-PCR assay revealed that the expression of OsNHA1 was up-regulated in both shoots and roots of rice seedlings under salt stress, whereas it was not induced in the rice seedlings treated by drought stress
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	seedling	Isolation and characterization of a new Na+/H+ antiporter gene OsNHA1 from rice (Oryza sativa L.)	The semi-quantitative RT-PCR assay revealed that the expression of OsNHA1 was up-regulated in both shoots and roots of rice seedlings under salt stress, whereas it was not induced in the rice seedlings treated by drought stress
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	leaf	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)	In addition, lower expression of OsHKT1;5 and OsSOS1 in old leaves may decrease frequency of retrieving Na+ from old leaf cells
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	salt	Conservation of the salt overly sensitive pathway in rice	Moreover, OsSOS1 suppressed the salt sensitivity of a sos1-1 mutant of Arabidopsis
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	salt	Conservation of the salt overly sensitive pathway in rice	OsCIPK24 and OsCBL4 acted coordinately to activate OsSOS1 in yeast cells and they could be exchanged with their Arabidopsis counterpart to form heterologous protein kinase modules that activated both OsSOS1 and AtSOS1 and suppressed the salt sensitivity of sos2 and sos3 mutants of Arabidopsis
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	shoot	Isolation and characterization of a new Na+/H+ antiporter gene OsNHA1 from rice (Oryza sativa L.)	The semi-quantitative RT-PCR assay revealed that the expression of OsNHA1 was up-regulated in both shoots and roots of rice seedlings under salt stress, whereas it was not induced in the rice seedlings treated by drought stress
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	salt stress	Isolation and characterization of a new Na+/H+ antiporter gene OsNHA1 from rice (Oryza sativa L.)	The semi-quantitative RT-PCR assay revealed that the expression of OsNHA1 was up-regulated in both shoots and roots of rice seedlings under salt stress, whereas it was not induced in the rice seedlings treated by drought stress
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	root	Isolation and characterization of a new Na+/H+ antiporter gene OsNHA1 from rice (Oryza sativa L.)	The semi-quantitative RT-PCR assay revealed that the expression of OsNHA1 was up-regulated in both shoots and roots of rice seedlings under salt stress, whereas it was not induced in the rice seedlings treated by drought stress
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	drought	Isolation and characterization of a new Na+/H+ antiporter gene OsNHA1 from rice (Oryza sativa L.)	The semi-quantitative RT-PCR assay revealed that the expression of OsNHA1 was up-regulated in both shoots and roots of rice seedlings under salt stress, whereas it was not induced in the rice seedlings treated by drought stress
OsNHA1|OsSOS1	Os12g0641100	LOC_Os12g44360	alkaline stress	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots	Moreover, real-time RT-PCR analysis revealed that OsDMI3 up-regulated the transcript levels of OsSOS1 and PM-H+-ATPase genes OsA3 and OsA8 in saline-alkaline stressed rice plants
OsNHAD	Os09g0109800	LOC_Os09g02214	chloroplast	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).
OsNHAD	Os09g0109800	LOC_Os09g02214	chloroplast	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	Confocal laser scanning microscopy analysis of OsNHAD::GFP fusion in tobacco leaves shows that OsNHAD resides in the chloroplast envelop
OsNHAD	Os09g0109800	LOC_Os09g02214	chloroplast	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	Knock-down of OsNHAD by RNA interference led to increased rice sensitivity to Na+, manifested by stunted plant growth, enhanced cellular damage, reduced PSII activity and changed chloroplast morphology
OsNHAD	Os09g0109800	LOC_Os09g02214	growth	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	Complementation test reveals that OsNHAD was able to functionally restore the Arabidopsis mutant atnhd1-1 growth phenotype
OsNHAD	Os09g0109800	LOC_Os09g02214	resistance	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).
OsNHAD	Os09g0109800	LOC_Os09g02214	salt	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).
OsNHAD	Os09g0109800	LOC_Os09g02214	salt	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	These results suggest that OsNHAD possibly mediates homeostasis of sodium ions in the subcellular compartments and tissues of the plants when challenged to salt stress
OsNHAD	Os09g0109800	LOC_Os09g02214	salt stress	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).
OsNHAD	Os09g0109800	LOC_Os09g02214	salt stress	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	These results suggest that OsNHAD possibly mediates homeostasis of sodium ions in the subcellular compartments and tissues of the plants when challenged to salt stress
OsNHAD	Os09g0109800	LOC_Os09g02214	stress	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).
OsNHAD	Os09g0109800	LOC_Os09g02214	stress	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	OsNHAD transcripts mainly express in leaves and are induced by Na+ stress
OsNHAD	Os09g0109800	LOC_Os09g02214	stress	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	These results suggest that OsNHAD possibly mediates homeostasis of sodium ions in the subcellular compartments and tissues of the plants when challenged to salt stress
OsNHAD	Os09g0109800	LOC_Os09g02214	plant growth	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	Knock-down of OsNHAD by RNA interference led to increased rice sensitivity to Na+, manifested by stunted plant growth, enhanced cellular damage, reduced PSII activity and changed chloroplast morphology
OsNHAD	Os09g0109800	LOC_Os09g02214	homeostasis	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	These results suggest that OsNHAD possibly mediates homeostasis of sodium ions in the subcellular compartments and tissues of the plants when challenged to salt stress
OsNHAD	Os09g0109800	LOC_Os09g02214	transporter	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).
OsNHAD	Os09g0109800	LOC_Os09g02214	transporter	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	In this study, we functionally identified an uncharacterized sodium ion transporter named OsNHAD which encodes a putative Na+ <U+2044> H+ antiporter in rice
OsNHX1	Os07g0666900	LOC_Os07g47100	abiotic stress	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice	Real-time PCR analysis revealed that the abiotic stress-related genes, OsVHA-B, OsNHX1, COR413-TM1, and OsMyb4, were up-regulated in overexpressing lines, while these same genes were down-regulated in RNAi lines
OsNHX1	Os07g0666900	LOC_Os07g47100	salt	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	The expression of OsNHX1, OsNHX2, OsNHX3, and OsNHX5 is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA
OsNHX1	Os07g0666900	LOC_Os07g47100	lateral root	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX1	Os07g0666900	LOC_Os07g47100	shoot	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX1	Os07g0666900	LOC_Os07g47100	salt	Molecular cloning and expression of the Na+/H+ exchanger gene in Oryza sativa	These results suggest that the product of the novel gene, OsNHX1, functions as a Na+/H+ exchanger, and plays important roles in salt tolerance of rice
OsNHX1	Os07g0666900	LOC_Os07g47100	salt tolerance	Function, intracellular localization and the importance in salt tolerance of a vacuolar Na(+)/H(+) antiporter from rice	In addition, overexpression of OsNHX1 improved the salt tolerance of transgenic rice cells and plants
OsNHX1	Os07g0666900	LOC_Os07g47100	salt tolerance	Function, intracellular localization and the importance in salt tolerance of a vacuolar Na(+)/H(+) antiporter from rice	These results suggest that OsNHX1 on the tonoplasts plays important roles in the compartmentation of Na(+) and K(+) highly accumulated in the cytoplasm into the vacuoles, and the amount of the antiporter is one of the most important factors determining salt tolerance in rice
OsNHX1	Os07g0666900	LOC_Os07g47100	root	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX1	Os07g0666900	LOC_Os07g47100	root	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	OsNHX1 promoter-GUS activity only was localized to the guard cells and trichome, whereas OsNHX5 promoter-GUS activity only was localized to the root tip and pollen grains
OsNHX1	Os07g0666900	LOC_Os07g47100	root	Function, intracellular localization and the importance in salt tolerance of a vacuolar Na(+)/H(+) antiporter from rice	Treatment with high concentrations of NaCl and KCl increased the transcript levels of OsNHX1 in rice roots and shoots
OsNHX1	Os07g0666900	LOC_Os07g47100	pollen	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	OsNHX1 promoter-GUS activity only was localized to the guard cells and trichome, whereas OsNHX5 promoter-GUS activity only was localized to the root tip and pollen grains
OsNHX1	Os07g0666900	LOC_Os07g47100	shoot	Function, intracellular localization and the importance in salt tolerance of a vacuolar Na(+)/H(+) antiporter from rice	Treatment with high concentrations of NaCl and KCl increased the transcript levels of OsNHX1 in rice roots and shoots
OsNHX1	Os07g0666900	LOC_Os07g47100	salt	Function, intracellular localization and the importance in salt tolerance of a vacuolar Na(+)/H(+) antiporter from rice	In addition, overexpression of OsNHX1 improved the salt tolerance of transgenic rice cells and plants
OsNHX1	Os07g0666900	LOC_Os07g47100	salt	Function, intracellular localization and the importance in salt tolerance of a vacuolar Na(+)/H(+) antiporter from rice	These results suggest that OsNHX1 on the tonoplasts plays important roles in the compartmentation of Na(+) and K(+) highly accumulated in the cytoplasm into the vacuoles, and the amount of the antiporter is one of the most important factors determining salt tolerance in rice
OsNHX1	Os07g0666900	LOC_Os07g47100	vascular bundle	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX1	Os07g0666900	LOC_Os07g47100	salt stress	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	The expression of OsNHX1, OsNHX2, OsNHX3, and OsNHX5 is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA
OsNHX1	Os07g0666900	LOC_Os07g47100	salt tolerance	Molecular cloning and expression of the Na+/H+ exchanger gene in Oryza sativa	These results suggest that the product of the novel gene, OsNHX1, functions as a Na+/H+ exchanger, and plays important roles in salt tolerance of rice
OsNHX1	Os07g0666900	LOC_Os07g47100	grain	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	OsNHX1 promoter-GUS activity only was localized to the guard cells and trichome, whereas OsNHX5 promoter-GUS activity only was localized to the root tip and pollen grains
OsNHX1	Os07g0666900	LOC_Os07g47100	seedling	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX1	Os07g0666900	LOC_Os07g47100	tolerance	Enhanced Salt Tolerance Conferred by the Complete 2.3 kb cDNA of the Rice Vacuolar Na(+)/H(+) Antiporter Gene Compared to 1.9 kb Coding Region with 5' UTR in Transgenic Lines of Rice.	It also shows that inclusion of the complete un-translated regions (UTRs) of the alternatively spliced OsNHX1 gene provides a higher level of tolerance to the transgenic rice
OsNHX1	Os07g0666900	LOC_Os07g47100	grain	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions	OsNHX1 overexpression in rice resulted in a decrease in cl , and an increase in biomass, grain yield under drought
OsNHX1	Os07g0666900	LOC_Os07g47100	drought	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions	OsNHX1 overexpression in rice resulted in a decrease in cl , and an increase in biomass, grain yield under drought
OsNHX1	Os07g0666900	LOC_Os07g47100	drought	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions	Taken together, the natural variation in OsNHX1 could be utilized to manipulate the stomatal dynamics for an improved rice drought tolerance
OsNHX1	Os07g0666900	LOC_Os07g47100	tolerance	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions	Taken together, the natural variation in OsNHX1 could be utilized to manipulate the stomatal dynamics for an improved rice drought tolerance
OsNHX1	Os07g0666900	LOC_Os07g47100	grain yield	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions	OsNHX1 overexpression in rice resulted in a decrease in cl , and an increase in biomass, grain yield under drought
OsNHX1	Os07g0666900	LOC_Os07g47100	yield	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions	OsNHX1 overexpression in rice resulted in a decrease in cl , and an increase in biomass, grain yield under drought
OsNHX1	Os07g0666900	LOC_Os07g47100	drought tolerance	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions	Taken together, the natural variation in OsNHX1 could be utilized to manipulate the stomatal dynamics for an improved rice drought tolerance
OsNHX1	Os07g0666900	LOC_Os07g47100	stomatal	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions	Herein, using genome-wide association study, we showed that the genetic variation in OsNHX1 was strongly associated with the changes in cl , the time constant of stomatal closure, in 206 rice accessions
OsNHX1	Os07g0666900	LOC_Os07g47100	stomatal	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions	Taken together, the natural variation in OsNHX1 could be utilized to manipulate the stomatal dynamics for an improved rice drought tolerance
OsNHX2|OsNHX3	Os05g0148600	LOC_Os05g05590	salt	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	The expression of OsNHX1, OsNHX2, OsNHX3, and OsNHX5 is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA
OsNHX2|OsNHX3	Os05g0148600	LOC_Os05g05590	salt stress	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	The expression of OsNHX1, OsNHX2, OsNHX3, and OsNHX5 is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA
OsNHX4	Os06g0318500	LOC_Os06g21360	salt	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 The real-time quantitative PCR (qRT-PCR) and transcriptome analysis revealed that OsWRKY54 regulated the expression of some essential genes related to salt tolerance, such as OsNHX4 and OsHKT1;5
OsNHX4	Os06g0318500	LOC_Os06g21360	salt tolerance	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 The real-time quantitative PCR (qRT-PCR) and transcriptome analysis revealed that OsWRKY54 regulated the expression of some essential genes related to salt tolerance, such as OsNHX4 and OsHKT1;5
OsNHX5	Os09g0286400	LOC_Os09g11450	pollen	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	OsNHX1 promoter-GUS activity only was localized to the guard cells and trichome, whereas OsNHX5 promoter-GUS activity only was localized to the root tip and pollen grains
OsNHX5	Os09g0286400	LOC_Os09g11450	seedling	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX5	Os09g0286400	LOC_Os09g11450	grain	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	OsNHX1 promoter-GUS activity only was localized to the guard cells and trichome, whereas OsNHX5 promoter-GUS activity only was localized to the root tip and pollen grains
OsNHX5	Os09g0286400	LOC_Os09g11450	vascular bundle	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX5	Os09g0286400	LOC_Os09g11450	lateral root	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX5	Os09g0286400	LOC_Os09g11450	salt	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	The expression of OsNHX1, OsNHX2, OsNHX3, and OsNHX5 is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA
OsNHX5	Os09g0286400	LOC_Os09g11450	shoot	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX5	Os09g0286400	LOC_Os09g11450	salt stress	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	The expression of OsNHX1, OsNHX2, OsNHX3, and OsNHX5 is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA
OsNHX5	Os09g0286400	LOC_Os09g11450	root	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	When we studied the expression of beta-glucuronidase (GUS) driven by either the OsNHX1 or the OsNHX5 promoter, we observed activity in the stele, the emerging part of lateral roots, the vascular bundle, the water pore, and the basal part of seedling shoots with both promoters
OsNHX5	Os09g0286400	LOC_Os09g11450	root	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	OsNHX1 promoter-GUS activity only was localized to the guard cells and trichome, whereas OsNHX5 promoter-GUS activity only was localized to the root tip and pollen grains
OsNHX5	Os09g0286400	LOC_Os09g11450	leaf	OsNHX5-mediated pH homeostasis is required for post-Golgi trafficking of seed storage proteins in rice endosperm cells.	The OsNHX5 protein colocalizes to the Golgi, the trans-Golgi network (TGN) and the pre-vacuolar compartment (PVC) in tobacco leaf epidermal cells
OsNHX5	Os09g0286400	LOC_Os09g11450	seed	OsNHX5-mediated pH homeostasis is required for post-Golgi trafficking of seed storage proteins in rice endosperm cells.	Our results demonstrated an important role of OsNHX5 in regulating endomembrane luminal pH, which is essential for seed storage protein trafficking in rice
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	nitrogen	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	grain	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	These properties enable indica OsNR2 to confer increased effective tiller number, grain yield and NUE on japonica rice, effects enhanced by interaction with an additionally introgressed indica OsNRT1
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	tiller	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	These properties enable indica OsNR2 to confer increased effective tiller number, grain yield and NUE on japonica rice, effects enhanced by interaction with an additionally introgressed indica OsNRT1
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	grain yield	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	These properties enable indica OsNR2 to confer increased effective tiller number, grain yield and NUE on japonica rice, effects enhanced by interaction with an additionally introgressed indica OsNRT1
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	yield	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	yield	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	These properties enable indica OsNR2 to confer increased effective tiller number, grain yield and NUE on japonica rice, effects enhanced by interaction with an additionally introgressed indica OsNRT1
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	breeding	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	In consequence, indica OsNR2 provides an important breeding resource for the sustainable increases in japonica rice yields necessary for future global food security
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	tiller number	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	These properties enable indica OsNR2 to confer increased effective tiller number, grain yield and NUE on japonica rice, effects enhanced by interaction with an additionally introgressed indica OsNRT1
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	nitrate	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	leaf	New Insights into the Transcriptional Regulation of Genes Involved in the Nitrogen Use Efficiency under Potassium Chlorate in Rice ( Oryza sativa L.)	In addition, the expression of OsNR2 was differentially regulated between the roots, stem, and leaf tissues, and between introgression lines
OsNIA1|OsNia1|OsNR2	Os02g0770800	LOC_Os02g53130	stem	New Insights into the Transcriptional Regulation of Genes Involved in the Nitrogen Use Efficiency under Potassium Chlorate in Rice ( Oryza sativa L.)	However, in the stem and leaves, OsNR2 was upregulated in the NR introgression lines, but downregulation in the NRT introgression lines
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	transcription factor	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 OsNLP2 was localized to the plant cell nucleus, suggesting that it acts as a transcription factor
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	development	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 OsNLP2 expression was involved in susceptible disease development
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	resistance	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 These combined results suggest that OsNLP2 acts as a negative regulator of ferroptotic HR cell death and defense responses in rice, and may be a valuable gene source for molecular breeding of rice with broad-spectrum resistance to blast disease
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	disease	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 OsNLP2 expression was involved in susceptible disease development
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	disease	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 These combined results suggest that OsNLP2 acts as a negative regulator of ferroptotic HR cell death and defense responses in rice, and may be a valuable gene source for molecular breeding of rice with broad-spectrum resistance to blast disease
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	defense response	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 These combined results suggest that OsNLP2 acts as a negative regulator of ferroptotic HR cell death and defense responses in rice, and may be a valuable gene source for molecular breeding of rice with broad-spectrum resistance to blast disease
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	defense	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 These combined results suggest that OsNLP2 acts as a negative regulator of ferroptotic HR cell death and defense responses in rice, and may be a valuable gene source for molecular breeding of rice with broad-spectrum resistance to blast disease
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	blast	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 These combined results suggest that OsNLP2 acts as a negative regulator of ferroptotic HR cell death and defense responses in rice, and may be a valuable gene source for molecular breeding of rice with broad-spectrum resistance to blast disease
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	magnaporthe oryzae	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	magnaporthe oryzae	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 Here, we report that OsNLP2 negatively regulates ferroptotic cell death and immune responses in rice during Magnaporthe oryzae infection
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	cell death	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	cell death	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 Here, we report that OsNLP2 negatively regulates ferroptotic cell death and immune responses in rice during Magnaporthe oryzae infection
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	cell death	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 These combined results suggest that OsNLP2 acts as a negative regulator of ferroptotic HR cell death and defense responses in rice, and may be a valuable gene source for molecular breeding of rice with broad-spectrum resistance to blast disease
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	breeding	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 These combined results suggest that OsNLP2 acts as a negative regulator of ferroptotic HR cell death and defense responses in rice, and may be a valuable gene source for molecular breeding of rice with broad-spectrum resistance to blast disease
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	immune response	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	immune response	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 Here, we report that OsNLP2 negatively regulates ferroptotic cell death and immune responses in rice during Magnaporthe oryzae infection
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	blast disease	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 These combined results suggest that OsNLP2 acts as a negative regulator of ferroptotic HR cell death and defense responses in rice, and may be a valuable gene source for molecular breeding of rice with broad-spectrum resistance to blast disease
OsNIN-like2|OsNLP2	Os04g0495800	LOC_Os04g41850	disease development	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to Magnaporthe oryzae in Rice.	 OsNLP2 expression was involved in susceptible disease development
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	transcription factor	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	Five transcription factors (TFs) belonging to three distinct TF families: one TCP (OsPCF2), one CPP (OsCPP5) and three NIN-like (OsNIN-like2, OsNIN-like3 and OsNIN-like4) were identified as binding to OsNHX1 promoter
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	grain	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Here we report that the OsNLP3 (NIN-like protein 3) regulates NUE and grain yield in rice under N sufficient conditions
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	grain	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Loss-of-function of OsNLP3 reduces plant growth, grain yield, and NUE under sufficient nitrate conditions, whereas under low nitrate or different ammonium conditions, osnlp3 mutants show no clear difference from the wild type
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	grain	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Importantly, under sufficient N conditions in the field, OsNLP3 overexpression lines display improved grain yield and NUE compared with the wild type
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	grain	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Therefore, OsNLP3 is a promising candidate gene for the genetic improvement of grain yield and NUE in rice
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	grain yield	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Here we report that the OsNLP3 (NIN-like protein 3) regulates NUE and grain yield in rice under N sufficient conditions
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	grain yield	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Loss-of-function of OsNLP3 reduces plant growth, grain yield, and NUE under sufficient nitrate conditions, whereas under low nitrate or different ammonium conditions, osnlp3 mutants show no clear difference from the wild type
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	grain yield	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Importantly, under sufficient N conditions in the field, OsNLP3 overexpression lines display improved grain yield and NUE compared with the wild type
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	grain yield	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Therefore, OsNLP3 is a promising candidate gene for the genetic improvement of grain yield and NUE in rice
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	yield	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Here we report that the OsNLP3 (NIN-like protein 3) regulates NUE and grain yield in rice under N sufficient conditions
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	yield	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Importantly, under sufficient N conditions in the field, OsNLP3 overexpression lines display improved grain yield and NUE compared with the wild type
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	yield	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Therefore, OsNLP3 is a promising candidate gene for the genetic improvement of grain yield and NUE in rice
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	plant growth	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Loss-of-function of OsNLP3 reduces plant growth, grain yield, and NUE under sufficient nitrate conditions, whereas under low nitrate or different ammonium conditions, osnlp3 mutants show no clear difference from the wild type
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	nitrate	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 OsNLP3 transcript level is significantly induced by N starvation and its protein nucleocytosolic shuttling is specifically regulated by nitrate
OsNIN-like3|OsNLP3	Os01g0236700	LOC_Os01g13540	nitrate	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	 Loss-of-function of OsNLP3 reduces plant growth, grain yield, and NUE under sufficient nitrate conditions, whereas under low nitrate or different ammonium conditions, osnlp3 mutants show no clear difference from the wild type
OsNIN-like4|OsNLP5	Os11g0264300	LOC_Os11g16290	drought	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	In addition, although the OsNHX1 response to salt and PEG-induced drought stress in either shoots or roots was quite similar in both rice genotypes, the expression of OsPCF2 in roots under salt stress and the OsNIN-like4 in roots subjected to PEG was mainly up-regulated in Hasawi, indicating that these TFs may be associated with the salt and drought stress tolerance observed for this genotype
OsNIN-like4|OsNLP5	Os11g0264300	LOC_Os11g16290	salt	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	In addition, although the OsNHX1 response to salt and PEG-induced drought stress in either shoots or roots was quite similar in both rice genotypes, the expression of OsPCF2 in roots under salt stress and the OsNIN-like4 in roots subjected to PEG was mainly up-regulated in Hasawi, indicating that these TFs may be associated with the salt and drought stress tolerance observed for this genotype
OsNIN-like4|OsNLP5	Os11g0264300	LOC_Os11g16290	tolerance	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	In addition, although the OsNHX1 response to salt and PEG-induced drought stress in either shoots or roots was quite similar in both rice genotypes, the expression of OsPCF2 in roots under salt stress and the OsNIN-like4 in roots subjected to PEG was mainly up-regulated in Hasawi, indicating that these TFs may be associated with the salt and drought stress tolerance observed for this genotype
OsNIN-like4|OsNLP5	Os11g0264300	LOC_Os11g16290	salt stress	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	In addition, although the OsNHX1 response to salt and PEG-induced drought stress in either shoots or roots was quite similar in both rice genotypes, the expression of OsPCF2 in roots under salt stress and the OsNIN-like4 in roots subjected to PEG was mainly up-regulated in Hasawi, indicating that these TFs may be associated with the salt and drought stress tolerance observed for this genotype
OsNIN-like4|OsNLP5	Os11g0264300	LOC_Os11g16290	stress	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	In addition, although the OsNHX1 response to salt and PEG-induced drought stress in either shoots or roots was quite similar in both rice genotypes, the expression of OsPCF2 in roots under salt stress and the OsNIN-like4 in roots subjected to PEG was mainly up-regulated in Hasawi, indicating that these TFs may be associated with the salt and drought stress tolerance observed for this genotype
OsNIN-like4|OsNLP5	Os11g0264300	LOC_Os11g16290	drought stress	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	In addition, although the OsNHX1 response to salt and PEG-induced drought stress in either shoots or roots was quite similar in both rice genotypes, the expression of OsPCF2 in roots under salt stress and the OsNIN-like4 in roots subjected to PEG was mainly up-regulated in Hasawi, indicating that these TFs may be associated with the salt and drought stress tolerance observed for this genotype
OsNIN-like4|OsNLP5	Os11g0264300	LOC_Os11g16290	drought stress 	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	In addition, although the OsNHX1 response to salt and PEG-induced drought stress in either shoots or roots was quite similar in both rice genotypes, the expression of OsPCF2 in roots under salt stress and the OsNIN-like4 in roots subjected to PEG was mainly up-regulated in Hasawi, indicating that these TFs may be associated with the salt and drought stress tolerance observed for this genotype
OsNIN-like4|OsNLP5	Os11g0264300	LOC_Os11g16290	stress tolerance	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	In addition, although the OsNHX1 response to salt and PEG-induced drought stress in either shoots or roots was quite similar in both rice genotypes, the expression of OsPCF2 in roots under salt stress and the OsNIN-like4 in roots subjected to PEG was mainly up-regulated in Hasawi, indicating that these TFs may be associated with the salt and drought stress tolerance observed for this genotype
OsNIN1	Os03g0314800	LOC_Os03g20020	mitochondria	Genes for alkaline/neutral invertase in rice: alkaline/neutral invertases are located in plant mitochondria and also in plastids	Analyses using five types of web software for the prediction of protein localization in the cell, Predotar, PSORT, Mitoprot, TargetP, and ChloroP, strongly supported the possibility that OsNIN1 is transported into the mitochondria and that OsNIN3 is transported into plastids
OsNIN1	Os03g0314800	LOC_Os03g20020	mitochondria	Genes for alkaline/neutral invertase in rice: alkaline/neutral invertases are located in plant mitochondria and also in plastids	Transient expression of fusion proteins combining the amino terminal region of these two proteins with sGFP demonstrated that N-OsNIN1::GFP and N-OsNIN3::GFP fusion proteins were transported into the mitochondria and plastids, respectively
OsNIN3	Os02g0529400	LOC_Os02g32730	mitochondria	Genes for alkaline/neutral invertase in rice: alkaline/neutral invertases are located in plant mitochondria and also in plastids	Analyses using five types of web software for the prediction of protein localization in the cell, Predotar, PSORT, Mitoprot, TargetP, and ChloroP, strongly supported the possibility that OsNIN1 is transported into the mitochondria and that OsNIN3 is transported into plastids
OsNIN3	Os02g0529400	LOC_Os02g32730	mitochondria	Genes for alkaline/neutral invertase in rice: alkaline/neutral invertases are located in plant mitochondria and also in plastids	Transient expression of fusion proteins combining the amino terminal region of these two proteins with sGFP demonstrated that N-OsNIN1::GFP and N-OsNIN3::GFP fusion proteins were transported into the mitochondria and plastids, respectively
OsNINJA1	Os05g0558800	LOC_Os05g48500	leaf	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	Furthermore, OsNINJA1 negatively affected JA-regulated leaf senescence under dark-induced senescence conditions
OsNINJA1	Os05g0558800	LOC_Os05g48500	leaf senescence	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	Furthermore, OsNINJA1 negatively affected JA-regulated leaf senescence under dark-induced senescence conditions
OsNINJA1	Os05g0558800	LOC_Os05g48500	senescence	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	Furthermore, OsNINJA1 negatively affected JA-regulated leaf senescence under dark-induced senescence conditions
OsNINJA1	Os05g0558800	LOC_Os05g48500	ja	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	The expression of OsNINJA1 was upregulated at an early phase after JA treatment, and OsNINJA1 interacted with several OsJAZ proteins in a C domain-dependent manner
OsNINJA1	Os05g0558800	LOC_Os05g48500	ja	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	These results indicate that OsNINJA1 acts as a negative regulator of OsMYC2-mediated JA signaling in rice
OsNINJA1	Os05g0558800	LOC_Os05g48500	blight	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	Transgenic rice plants overexpressing OsNINJA1 exhibited a JA-insensitive phenotype and were more susceptible to rice bacterial blight caused by Xanthomonas oryzae pv
OsNINJA1	Os05g0558800	LOC_Os05g48500	JA	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	The expression of OsNINJA1 was upregulated at an early phase after JA treatment, and OsNINJA1 interacted with several OsJAZ proteins in a C domain-dependent manner
OsNINJA1	Os05g0558800	LOC_Os05g48500	JA	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	These results indicate that OsNINJA1 acts as a negative regulator of OsMYC2-mediated JA signaling in rice
OsNINJA1	Os05g0558800	LOC_Os05g48500	bacterial blight	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	Transgenic rice plants overexpressing OsNINJA1 exhibited a JA-insensitive phenotype and were more susceptible to rice bacterial blight caused by Xanthomonas oryzae pv
OsNIP1;1	Os02g0232900	LOC_Os02g13870	xylem	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Overexpression of OsNIP1;1 or OsNIP3;3 provides a route for arsenite to leak out of the stele, thus restricting arsenite loading into the xylem
OsNIP1;1	Os02g0232900	LOC_Os02g13870	root	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	The overexpressed OsNIP1;1 and OsNIP3;3 proteins were localized in all root cells without polarity
OsNIP1;1	Os02g0232900	LOC_Os02g13870	shoot	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Overexpression of OsNIP1;1 or OsNIP3;3 in rice did not affect arsenite uptake but decreased root-to-shoot translocation of arsenite and shoot arsenic concentration markedly
OsNIP1;1	Os02g0232900	LOC_Os02g13870	Ubiquitin	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	We generated transgenic rice overexpressing two aquaporin genes, OsNIP1;1 and OsNIP3;3, under the control of a maize ubiquitin promoter or the rice OsLsi1 promoter, and tested the effect on arsenite uptake and translocation
OsNIP1;1	Os02g0232900	LOC_Os02g13870	arsenite	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.
OsNIP1;1	Os02g0232900	LOC_Os02g13870	arsenite	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	We generated transgenic rice overexpressing two aquaporin genes, OsNIP1;1 and OsNIP3;3, under the control of a maize ubiquitin promoter or the rice OsLsi1 promoter, and tested the effect on arsenite uptake and translocation
OsNIP1;1	Os02g0232900	LOC_Os02g13870	arsenite	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	OsNIP1;1 and OsNIP3;3 were highly permeable to arsenite in Xenopus oocyte assays
OsNIP1;1	Os02g0232900	LOC_Os02g13870	arsenite	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Overexpression of OsNIP1;1 or OsNIP3;3 in rice did not affect arsenite uptake but decreased root-to-shoot translocation of arsenite and shoot arsenic concentration markedly
OsNIP1;1	Os02g0232900	LOC_Os02g13870	arsenite	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Overexpression of OsNIP1;1 or OsNIP3;3 provides a route for arsenite to leak out of the stele, thus restricting arsenite loading into the xylem
OsNIP1;1	Os02g0232900	LOC_Os02g13870	arsenic accumulation	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.
OsNIP1;2	Os01g0202800	LOC_Os01g10600	root	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 Aluminum stress specifically and quickly induced OsNIP1;2 expression in the root
OsNIP1;2	Os01g0202800	LOC_Os01g10600	root	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 Moreover, the Osnip1;2 mutants had considerably more Al accumulated in the root cell wall but less in the cytosol than the wild-type rice
OsNIP1;2	Os01g0202800	LOC_Os01g10600	root	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 In addition, compared with the wild-type rice plants, the Osnip1;2 mutants contained more Al in the root but less in the shoot
OsNIP1;2	Os01g0202800	LOC_Os01g10600	root	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 These results suggest that OsNIP1;2 confers internal Al detoxification via taking out the root cell wall&#x27;s Al, sequestering it to the root cell&#x27;s vacuole, and re-distributing it to the above-ground tissues
OsNIP1;2	Os01g0202800	LOC_Os01g10600	shoot	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 In addition, compared with the wild-type rice plants, the Osnip1;2 mutants contained more Al in the root but less in the shoot
OsNIP1;2	Os01g0202800	LOC_Os01g10600	stress	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 Aluminum stress specifically and quickly induced OsNIP1;2 expression in the root
OsNIP1;2	Os01g0202800	LOC_Os01g10600	aluminum	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.
OsNIP1;2	Os01g0202800	LOC_Os01g10600	aluminum	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 Aluminum stress specifically and quickly induced OsNIP1;2 expression in the root
OsNIP1;2	Os01g0202800	LOC_Os01g10600	cell wall	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 Moreover, the Osnip1;2 mutants had considerably more Al accumulated in the root cell wall but less in the cytosol than the wild-type rice
OsNIP1;2	Os01g0202800	LOC_Os01g10600	cell wall	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 These results suggest that OsNIP1;2 confers internal Al detoxification via taking out the root cell wall&#x27;s Al, sequestering it to the root cell&#x27;s vacuole, and re-distributing it to the above-ground tissues
OsNIP1;2	Os01g0202800	LOC_Os01g10600	plasma membrane	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.
OsNIP1;2	Os01g0202800	LOC_Os01g10600	detoxification	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.
OsNIP1;2	Os01g0202800	LOC_Os01g10600	detoxification	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 These results suggest that OsNIP1;2 confers internal Al detoxification via taking out the root cell wall&#x27;s Al, sequestering it to the root cell&#x27;s vacuole, and re-distributing it to the above-ground tissues
OsNIP1;2	Os01g0202800	LOC_Os01g10600	cytosol	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	 Moreover, the Osnip1;2 mutants had considerably more Al accumulated in the root cell wall but less in the cytosol than the wild-type rice
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	boron	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	boric acid	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	boron distribution	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	growth	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	plasma membrane	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	GFP-tagged OsNIP3;1 expressed in tobacco BY2 cells was localized to the plasma membrane.
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	exodermal cells	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	Promoter-GUS analysis suggested that OsNIP3;1 is expressed mainly in exodermal cells and steles in roots, as well as in cells around the vascular bundles in leaf sheaths and pericycle cells around the xylem in leaf blades.
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	steles	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	Promoter-GUS analysis suggested that OsNIP3;1 is expressed mainly in exodermal cells and steles in roots, as well as in cells around the vascular bundles in leaf sheaths and pericycle cells around the xylem in leaf blades.
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	root	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	Promoter-GUS analysis suggested that OsNIP3;1 is expressed mainly in exodermal cells and steles in roots, as well as in cells around the vascular bundles in leaf sheaths and pericycle cells around the xylem in leaf blades.
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	sheath	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	Promoter-GUS analysis suggested that OsNIP3;1 is expressed mainly in exodermal cells and steles in roots, as well as in cells around the vascular bundles in leaf sheaths and pericycle cells around the xylem in leaf blades.
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	leaf	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions	Promoter-GUS analysis suggested that OsNIP3;1 is expressed mainly in exodermal cells and steles in roots, as well as in cells around the vascular bundles in leaf sheaths and pericycle cells around the xylem in leaf blades.
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	growth	Dwarf and tiller-enhancing 1 regulates growth and development by influencing boron uptake in boron limited conditions in rice.	These data provide evidence that DTE1 is critical for vegetative growth and reproductive development in rice grown under B-deficient conditions
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	development	Dwarf and tiller-enhancing 1 regulates growth and development by influencing boron uptake in boron limited conditions in rice.	These data provide evidence that DTE1 is critical for vegetative growth and reproductive development in rice grown under B-deficient conditions
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	map-based cloning	Dwarf and tiller-enhancing 1 regulates growth and development by influencing boron uptake in boron limited conditions in rice.	Map-based cloning revealed that dte1 encodes a NOD26-LIKE INTRINSIC PROTEIN orthologous to known B channel proteins AtNIP5;1 in Arabidopsis and TASSEL-LESS1 in maize
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	vegetative	Dwarf and tiller-enhancing 1 regulates growth and development by influencing boron uptake in boron limited conditions in rice.	These data provide evidence that DTE1 is critical for vegetative growth and reproductive development in rice grown under B-deficient conditions
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	reproductive	Dwarf and tiller-enhancing 1 regulates growth and development by influencing boron uptake in boron limited conditions in rice.	These data provide evidence that DTE1 is critical for vegetative growth and reproductive development in rice grown under B-deficient conditions
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	plasma membrane	Dwarf and tiller-enhancing 1 regulates growth and development by influencing boron uptake in boron limited conditions in rice.	Subcellular localization showed DTE1 is mainly localized in the plasma membrane
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	reproductive development	Dwarf and tiller-enhancing 1 regulates growth and development by influencing boron uptake in boron limited conditions in rice.	These data provide evidence that DTE1 is critical for vegetative growth and reproductive development in rice grown under B-deficient conditions
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	xylem	Preferential distribution of boron to developing tissues is mediated by the intrinsic protein OsNIP3;1.	OsNIP3;1 was polarly localized at the xylem parenchyma cells of enlarged vascular bundles of nodes facing toward the xylem vessels
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	xylem	Preferential distribution of boron to developing tissues is mediated by the intrinsic protein OsNIP3;1.	These results indicate that OsNIP3;1 located in the nodes is involved in the preferential distribution of B to the developing tissues by unloading B from the xylem in rice and that it is regulated at both transcriptional and protein level in response to external B level
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	vascular bundle	Preferential distribution of boron to developing tissues is mediated by the intrinsic protein OsNIP3;1.	OsNIP3;1 was polarly localized at the xylem parenchyma cells of enlarged vascular bundles of nodes facing toward the xylem vessels
OsNIP3;1|DTE1	Os10g0513200	LOC_Os10g36924	xylem parenchyma	Preferential distribution of boron to developing tissues is mediated by the intrinsic protein OsNIP3;1.	OsNIP3;1 was polarly localized at the xylem parenchyma cells of enlarged vascular bundles of nodes facing toward the xylem vessels
OsNIP3;2	Os08g0152000	LOC_Os08g05590	shoot	The Nodulin 26-like intrinsic membrane protein OsNIP3;2 is involved in arsenite uptake by lateral roots in rice.	Knockout of OsNIP3;2 significantly decreased As concentration in the roots, but had little effect on shoot As concentration
OsNIP3;2	Os08g0152000	LOC_Os08g05590	lateral root	The Nodulin 26-like intrinsic membrane protein OsNIP3;2 is involved in arsenite uptake by lateral roots in rice.	The Nodulin 26-like intrinsic membrane protein OsNIP3;2 is involved in arsenite uptake by lateral roots in rice.
OsNIP3;2	Os08g0152000	LOC_Os08g05590	lateral root	The Nodulin 26-like intrinsic membrane protein OsNIP3;2 is involved in arsenite uptake by lateral roots in rice.	Our results indicate that OsNIP3;2 is involved in As(III) uptake by lateral roots, but its contribution to As accumulation in the shoots is limited
OsNIP3;2	Os08g0152000	LOC_Os08g05590	arsenite	The Nodulin 26-like intrinsic membrane protein OsNIP3;2 is involved in arsenite uptake by lateral roots in rice.	The Nodulin 26-like intrinsic membrane protein OsNIP3;2 is involved in arsenite uptake by lateral roots in rice.
OsNIP3;3	Os08g0152100	LOC_Os08g05600	xylem	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Overexpression of OsNIP1;1 or OsNIP3;3 provides a route for arsenite to leak out of the stele, thus restricting arsenite loading into the xylem
OsNIP3;3	Os08g0152100	LOC_Os08g05600	root	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	The overexpressed OsNIP1;1 and OsNIP3;3 proteins were localized in all root cells without polarity
OsNIP3;3	Os08g0152100	LOC_Os08g05600	shoot	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Overexpression of OsNIP1;1 or OsNIP3;3 in rice did not affect arsenite uptake but decreased root-to-shoot translocation of arsenite and shoot arsenic concentration markedly
OsNIP3;3	Os08g0152100	LOC_Os08g05600	arsenite	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.
OsNIP3;3	Os08g0152100	LOC_Os08g05600	arsenite	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	OsNIP1;1 and OsNIP3;3 were highly permeable to arsenite in Xenopus oocyte assays
OsNIP3;3	Os08g0152100	LOC_Os08g05600	arsenite	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Overexpression of OsNIP1;1 or OsNIP3;3 in rice did not affect arsenite uptake but decreased root-to-shoot translocation of arsenite and shoot arsenic concentration markedly
OsNIP3;3	Os08g0152100	LOC_Os08g05600	arsenite	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Overexpression of OsNIP1;1 or OsNIP3;3 provides a route for arsenite to leak out of the stele, thus restricting arsenite loading into the xylem
OsNIP3;3	Os08g0152100	LOC_Os08g05600	arsenic accumulation	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.
OsNIT1	Os02g0635200	LOC_Os02g42350	root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	osnit1 and osnit2 displayed decreased primary root length and lateral root density
OsNIT1	Os02g0635200	LOC_Os02g42350	root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	Both osnit1 and osnit2 showed root growth hypersensitivity to external ammonium; however, less root growth sensitivity to external IAN, higher expression of three IAA-amido synthetase (GH3) genes, and a lower rate of 3H-IAA movement towards the roots were observed
OsNIT1	Os02g0635200	LOC_Os02g42350	growth	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	Both osnit1 and osnit2 showed root growth hypersensitivity to external ammonium; however, less root growth sensitivity to external IAN, higher expression of three IAA-amido synthetase (GH3) genes, and a lower rate of 3H-IAA movement towards the roots were observed
OsNIT1	Os02g0635200	LOC_Os02g42350	lateral root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	osnit1 and osnit2 displayed decreased primary root length and lateral root density
OsNIT1	Os02g0635200	LOC_Os02g42350	primary root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	osnit1 and osnit2 displayed decreased primary root length and lateral root density
OsNIT1	Os02g0635200	LOC_Os02g42350	nitrate	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.
OsNIT1	Os02g0635200	LOC_Os02g42350	root length	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	osnit1 and osnit2 displayed decreased primary root length and lateral root density
OsNIT1	Os02g0635200	LOC_Os02g42350	root growth	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	Both osnit1 and osnit2 showed root growth hypersensitivity to external ammonium; however, less root growth sensitivity to external IAN, higher expression of three IAA-amido synthetase (GH3) genes, and a lower rate of 3H-IAA movement towards the roots were observed
OsNIT2	Os02g0635000	LOC_Os02g42330	root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	osnit1 and osnit2 displayed decreased primary root length and lateral root density
OsNIT2	Os02g0635000	LOC_Os02g42330	root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	1 and OsNIT2 caused further decreases in lateral root density under nitrate supply
OsNIT2	Os02g0635000	LOC_Os02g42330	root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	Both osnit1 and osnit2 showed root growth hypersensitivity to external ammonium; however, less root growth sensitivity to external IAN, higher expression of three IAA-amido synthetase (GH3) genes, and a lower rate of 3H-IAA movement towards the roots were observed
OsNIT2	Os02g0635000	LOC_Os02g42330	growth	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	Both osnit1 and osnit2 showed root growth hypersensitivity to external ammonium; however, less root growth sensitivity to external IAN, higher expression of three IAA-amido synthetase (GH3) genes, and a lower rate of 3H-IAA movement towards the roots were observed
OsNIT2	Os02g0635000	LOC_Os02g42330	lateral root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	osnit1 and osnit2 displayed decreased primary root length and lateral root density
OsNIT2	Os02g0635000	LOC_Os02g42330	lateral root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	1 and OsNIT2 caused further decreases in lateral root density under nitrate supply
OsNIT2	Os02g0635000	LOC_Os02g42330	primary root	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	osnit1 and osnit2 displayed decreased primary root length and lateral root density
OsNIT2	Os02g0635000	LOC_Os02g42330	nitrate	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.
OsNIT2	Os02g0635000	LOC_Os02g42330	nitrate	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	1 and OsNIT2 caused further decreases in lateral root density under nitrate supply
OsNIT2	Os02g0635000	LOC_Os02g42330	root length	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	osnit1 and osnit2 displayed decreased primary root length and lateral root density
OsNIT2	Os02g0635000	LOC_Os02g42330	root growth	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	Both osnit1 and osnit2 showed root growth hypersensitivity to external ammonium; however, less root growth sensitivity to external IAN, higher expression of three IAA-amido synthetase (GH3) genes, and a lower rate of 3H-IAA movement towards the roots were observed
OsNLA1	Os07g0673200	LOC_Os07g47590	nitrogen	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	In this study, we found that the Oryza sativa (rice) ortholog of Arabidopsis thaliana Nitrogen Limitation Adaptation (NLA), OsNLA1 protein, a RING-type E3 ubiquitin-ligase, was predominantly localized in the plasma membrane, and could interact with rice phosphate transporters OsPT2 and OsPT8
OsNLA1	Os07g0673200	LOC_Os07g47590	leaf	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Overexpression of OsNLA1 or repression of OsPT2/PT8 restored the high leaf Pi concentration in osnla1 mutants to a level similar to that of wild type plants
OsNLA1	Os07g0673200	LOC_Os07g47590	homeostasis	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Our results show that OsNLA1 is involved in maintaining phosphate homeostasis in rice by mediating the degradation of OsPT2 and OsPT8, and OsNLA1 differs from the ortholog in Arabidopsis in several aspects
OsNLA1	Os07g0673200	LOC_Os07g47590	plasma membrane	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	In this study, we found that the Oryza sativa (rice) ortholog of Arabidopsis thaliana Nitrogen Limitation Adaptation (NLA), OsNLA1 protein, a RING-type E3 ubiquitin-ligase, was predominantly localized in the plasma membrane, and could interact with rice phosphate transporters OsPT2 and OsPT8
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Mutation in OsNLA1 (osnla1) led to significant increase of Pi concentration in leaves in a nitrate-independent manner
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Overexpression of OsNLA1 or repression of OsPT2/PT8 restored the high leaf Pi concentration in osnla1 mutants to a level similar to that of wild type plants
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	In contrast to what has been observed in Arabidopsis, the transcript abundance of OsNLA1 did not decrease under Pi limited conditions or in OsmiR827 (microRNA827)- or OsPHR2 (PHOSPHATE STARVATION RESPONSE 2)-overexpressing transgenic lines
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	In this study, we found that the Oryza sativa (rice) ortholog of Arabidopsis thaliana Nitrogen Limitation Adaptation (NLA), OsNLA1 protein, a RING-type E3 ubiquitin-ligase, was predominantly localized in the plasma membrane, and could interact with rice phosphate transporters OsPT2 and OsPT8
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Our results show that OsNLA1 is involved in maintaining phosphate homeostasis in rice by mediating the degradation of OsPT2 and OsPT8, and OsNLA1 differs from the ortholog in Arabidopsis in several aspects
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Mutation in OsNLA1 (osnla1) led to significant increase of Pi concentration in leaves in a nitrate-independent manner
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Overexpression of OsNLA1 or repression of OsPT2/PT8 restored the high leaf Pi concentration in osnla1 mutants to a level similar to that of wild type plants
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	In contrast to what has been observed in Arabidopsis, the transcript abundance of OsNLA1 did not decrease under Pi limited conditions or in OsmiR827 (microRNA827)- or OsPHR2 (PHOSPHATE STARVATION RESPONSE 2)-overexpressing transgenic lines
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate transport	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	In this study, we found that the Oryza sativa (rice) ortholog of Arabidopsis thaliana Nitrogen Limitation Adaptation (NLA), OsNLA1 protein, a RING-type E3 ubiquitin-ligase, was predominantly localized in the plasma membrane, and could interact with rice phosphate transporters OsPT2 and OsPT8
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate starvation	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	In contrast to what has been observed in Arabidopsis, the transcript abundance of OsNLA1 did not decrease under Pi limited conditions or in OsmiR827 (microRNA827)- or OsPHR2 (PHOSPHATE STARVATION RESPONSE 2)-overexpressing transgenic lines
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate homeostasis	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Our results show that OsNLA1 is involved in maintaining phosphate homeostasis in rice by mediating the degradation of OsPT2 and OsPT8, and OsNLA1 differs from the ortholog in Arabidopsis in several aspects
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate starvation response	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	In contrast to what has been observed in Arabidopsis, the transcript abundance of OsNLA1 did not decrease under Pi limited conditions or in OsmiR827 (microRNA827)- or OsPHR2 (PHOSPHATE STARVATION RESPONSE 2)-overexpressing transgenic lines
OsNLA1	Os07g0673200	LOC_Os07g47590	nitrogen	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	When grown under limiting nitrate levels, OsNLA1 transgenic lines also displayed a similar pattern in Pi accumulation and Pi toxicity symptoms compared to wild-type suggesting an existence of cross-talk between nitrogen (N) and phosphorous (P), which is regulated by OsNLA1
OsNLA1	Os07g0673200	LOC_Os07g47590	shoot	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	When grown under sufficient Pi and nitrate levels, OsNLA1 knockdown (Osnla1-1, Osnla1-2, and Osnla1-3) lines accumulated higher Pi content in their shoot tissues compared to wild-type, whereas, over-expression lines (OsNLA1-OE1, OsNLA1-OE2, and OsNLA1-OE3) accumulated the least levels of Pi
OsNLA1	Os07g0673200	LOC_Os07g47590	homeostasis	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Taken together, these results show that OsNLA1 is involved in Pi homeostasis regulating Pi uptake and accumulation in rice plants and may provide an opportunity to enhance P use efficiency by manipulating nitrate supply in the soil
OsNLA1	Os07g0673200	LOC_Os07g47590	nitrate	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	When grown under sufficient Pi and nitrate levels, OsNLA1 knockdown (Osnla1-1, Osnla1-2, and Osnla1-3) lines accumulated higher Pi content in their shoot tissues compared to wild-type, whereas, over-expression lines (OsNLA1-OE1, OsNLA1-OE2, and OsNLA1-OE3) accumulated the least levels of Pi
OsNLA1	Os07g0673200	LOC_Os07g47590	nitrate	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	When grown under limiting nitrate levels, OsNLA1 transgenic lines also displayed a similar pattern in Pi accumulation and Pi toxicity symptoms compared to wild-type suggesting an existence of cross-talk between nitrogen (N) and phosphorous (P), which is regulated by OsNLA1
OsNLA1	Os07g0673200	LOC_Os07g47590	nitrate	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Taken together, these results show that OsNLA1 is involved in Pi homeostasis regulating Pi uptake and accumulation in rice plants and may provide an opportunity to enhance P use efficiency by manipulating nitrate supply in the soil
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	When grown under sufficient Pi and nitrate levels, OsNLA1 knockdown (Osnla1-1, Osnla1-2, and Osnla1-3) lines accumulated higher Pi content in their shoot tissues compared to wild-type, whereas, over-expression lines (OsNLA1-OE1, OsNLA1-OE2, and OsNLA1-OE3) accumulated the least levels of Pi
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	When grown under limiting nitrate levels, OsNLA1 transgenic lines also displayed a similar pattern in Pi accumulation and Pi toxicity symptoms compared to wild-type suggesting an existence of cross-talk between nitrogen (N) and phosphorous (P), which is regulated by OsNLA1
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Moreover, OsNLA1 was also found to interact with OsPHO2, a known regulator of Pi homeostasis, in a Yeast Two-Hybrid (Y2H) assay
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Taken together, these results show that OsNLA1 is involved in Pi homeostasis regulating Pi uptake and accumulation in rice plants and may provide an opportunity to enhance P use efficiency by manipulating nitrate supply in the soil
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	In this study, by using transgenic approaches, we have revealed the critical role of OsNLA1 in phosphate (Pi) accumulation of rice plants
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	When grown under sufficient Pi and nitrate levels, OsNLA1 knockdown (Osnla1-1, Osnla1-2, and Osnla1-3) lines accumulated higher Pi content in their shoot tissues compared to wild-type, whereas, over-expression lines (OsNLA1-OE1, OsNLA1-OE2, and OsNLA1-OE3) accumulated the least levels of Pi
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	When grown under limiting nitrate levels, OsNLA1 transgenic lines also displayed a similar pattern in Pi accumulation and Pi toxicity symptoms compared to wild-type suggesting an existence of cross-talk between nitrogen (N) and phosphorous (P), which is regulated by OsNLA1
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Moreover, OsNLA1 was also found to interact with OsPHO2, a known regulator of Pi homeostasis, in a Yeast Two-Hybrid (Y2H) assay
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Taken together, these results show that OsNLA1 is involved in Pi homeostasis regulating Pi uptake and accumulation in rice plants and may provide an opportunity to enhance P use efficiency by manipulating nitrate supply in the soil
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi homeostasis	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Moreover, OsNLA1 was also found to interact with OsPHO2, a known regulator of Pi homeostasis, in a Yeast Two-Hybrid (Y2H) assay
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi homeostasis	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Taken together, these results show that OsNLA1 is involved in Pi homeostasis regulating Pi uptake and accumulation in rice plants and may provide an opportunity to enhance P use efficiency by manipulating nitrate supply in the soil
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi uptake	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Taken together, these results show that OsNLA1 is involved in Pi homeostasis regulating Pi uptake and accumulation in rice plants and may provide an opportunity to enhance P use efficiency by manipulating nitrate supply in the soil
OsNLA1	Os07g0673200	LOC_Os07g47590	root	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Loss-of-function of OsNLA1 caused P overaccumulation and growth inhibitions in both root and shoot under Pi-sufficient condition
OsNLA1	Os07g0673200	LOC_Os07g47590	root	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Furthermore, mutation of OsNLA1 affected expression of Pi tranporters and root hair development under Pi-sufficient and/or Pi-deficient conditions
OsNLA1	Os07g0673200	LOC_Os07g47590	growth	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Loss-of-function of OsNLA1 caused P overaccumulation and growth inhibitions in both root and shoot under Pi-sufficient condition
OsNLA1	Os07g0673200	LOC_Os07g47590	shoot	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Loss-of-function of OsNLA1 caused P overaccumulation and growth inhibitions in both root and shoot under Pi-sufficient condition
OsNLA1	Os07g0673200	LOC_Os07g47590	development	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Furthermore, mutation of OsNLA1 affected expression of Pi tranporters and root hair development under Pi-sufficient and/or Pi-deficient conditions
OsNLA1	Os07g0673200	LOC_Os07g47590	homeostasis	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	OsNLA1 plays a key role in maintaining phosphate homeostasis in rice
OsNLA1	Os07g0673200	LOC_Os07g47590	root hair	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Furthermore, mutation of OsNLA1 affected expression of Pi tranporters and root hair development under Pi-sufficient and/or Pi-deficient conditions
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Furthermore, mutation of OsNLA1 affected expression of Pi tranporters and root hair development under Pi-sufficient and/or Pi-deficient conditions
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	OsNLA1 plays a key role in maintaining phosphate homeostasis in rice
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Furthermore, mutation of OsNLA1 affected expression of Pi tranporters and root hair development under Pi-sufficient and/or Pi-deficient conditions
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate homeostasis	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate homeostasis	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	OsNLA1 plays a key role in maintaining phosphate homeostasis in rice
OsNLA1	Os07g0673200	LOC_Os07g47590	root	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	Combining OsNLA1 mutation with OsPT8 overexpression resulted in As(V) hypersensitivity, As hyperaccumulation, and higher shoot to root ratio of As in rice
OsNLA1	Os07g0673200	LOC_Os07g47590	shoot	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	Combining OsNLA1 mutation with OsPT8 overexpression resulted in As(V) hypersensitivity, As hyperaccumulation, and higher shoot to root ratio of As in rice
OsNLA1	Os07g0673200	LOC_Os07g47590	tolerance	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.
OsNLA1	Os07g0673200	LOC_Os07g47590	tolerance	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	In this study, the role of OsNLA1 in arsenate uptake and tolerance in rice was analyzed
OsNLA1	Os07g0673200	LOC_Os07g47590	stress	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	OsNLA1 expression was induced in response to As(V) stress
OsNLA1	Os07g0673200	LOC_Os07g47590	stress	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	The osnla1 mutant was more sensitive to As(V) stress than those of the wild type (WT)
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	These results indicated that OsNLA1 plays an important role in arsenate uptake and tolerance, mainly via regulating the amount of Pi transporters
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	These results indicated that OsNLA1 plays an important role in arsenate uptake and tolerance, mainly via regulating the amount of Pi transporters
OsNLA1	Os07g0673200	LOC_Os07g47590	pollen	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	OsNLA1 promoter activity was observed in roots, ligules, leaves, sheaths, pollen grains, and surrounding the vascular tissues of anthers, suggesting that OsNLA1 is important throughout the development of rice
OsNLA1	Os07g0673200	LOC_Os07g47590	pollen	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	Disruption of OsNLA1 resulted in increased Pi uptake from roots as well as impaired pollen development and reduced grain production
OsNLA1	Os07g0673200	LOC_Os07g47590	grain	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	Disruption of OsNLA1 resulted in increased Pi uptake from roots as well as impaired pollen development and reduced grain production
OsNLA1	Os07g0673200	LOC_Os07g47590	development	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	OsNLA1 promoter activity was observed in roots, ligules, leaves, sheaths, pollen grains, and surrounding the vascular tissues of anthers, suggesting that OsNLA1 is important throughout the development of rice
OsNLA1	Os07g0673200	LOC_Os07g47590	development	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	Disruption of OsNLA1 resulted in increased Pi uptake from roots as well as impaired pollen development and reduced grain production
OsNLA1	Os07g0673200	LOC_Os07g47590	reproductive	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	In summary, our study reveals that Pi-induced OsNLA1 expression regulated by a unique mechanism functions in Pi acquisition, Pi translocation, and reproductive success
OsNLA1	Os07g0673200	LOC_Os07g47590	pollen development	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	Disruption of OsNLA1 resulted in increased Pi uptake from roots as well as impaired pollen development and reduced grain production
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	Rice (Oryza sativa) OsNLA1 has been proposed to play a crucial role in regulating phosphate (Pi) acquisition in roots, similar to that of Arabidopsis AtNLA
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	However, unlike AtNLA, OsNLA1 is not a target of miR827, a Pi starvation-induced miRNA
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	It is, therefore, of interest to know whether the expression of OsNLA1 depends on Pi supply and how it is regulated
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	In this study, we provide evidence that OsNLA1 controls Pi acquisition by directing the degradation of several OsPHT1 Pi transporters (i
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	Disruption of OsNLA1 resulted in increased Pi uptake from roots as well as impaired pollen development and reduced grain production
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	In summary, our study reveals that Pi-induced OsNLA1 expression regulated by a unique mechanism functions in Pi acquisition, Pi translocation, and reproductive success
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	However, unlike AtNLA, OsNLA1 is not a target of miR827, a Pi starvation-induced miRNA
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	It is, therefore, of interest to know whether the expression of OsNLA1 depends on Pi supply and how it is regulated
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	In this study, we provide evidence that OsNLA1 controls Pi acquisition by directing the degradation of several OsPHT1 Pi transporters (i
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	Disruption of OsNLA1 resulted in increased Pi uptake from roots as well as impaired pollen development and reduced grain production
OsNLA1	Os07g0673200	LOC_Os07g47590	pi	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	In summary, our study reveals that Pi-induced OsNLA1 expression regulated by a unique mechanism functions in Pi acquisition, Pi translocation, and reproductive success
OsNLA1	Os07g0673200	LOC_Os07g47590	Pi uptake	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	Disruption of OsNLA1 resulted in increased Pi uptake from roots as well as impaired pollen development and reduced grain production
OsNLA1	Os07g0673200	LOC_Os07g47590	phosphate transport	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.	uORF and Phosphate-Regulated Expression of Rice OsNLA1 Controls Phosphate Transport and Reproduction.
OsNLP1	Os03g0131100	LOC_Os03g03900	grain	Rice NIN-LIKE PROTEIN 1 rapidly responds to nitrogen deficiency and improves yield and nitrogen use efficiency	Overexpression of OsNLP1 improves plant growth, grain yield and NUE under different N conditions while knockout of OsNLP1 impairs grain yield and NUE under N limiting conditions
OsNLP1	Os03g0131100	LOC_Os03g03900	grain yield	Rice NIN-LIKE PROTEIN 1 rapidly responds to nitrogen deficiency and improves yield and nitrogen use efficiency	Overexpression of OsNLP1 improves plant growth, grain yield and NUE under different N conditions while knockout of OsNLP1 impairs grain yield and NUE under N limiting conditions
OsNLP1	Os03g0131100	LOC_Os03g03900	yield	Rice NIN-LIKE PROTEIN 1 rapidly responds to nitrogen deficiency and improves yield and nitrogen use efficiency	Overexpression of OsNLP1 improves plant growth, grain yield and NUE under different N conditions while knockout of OsNLP1 impairs grain yield and NUE under N limiting conditions
OsNLP1	Os03g0131100	LOC_Os03g03900	yield	Rice NIN-LIKE PROTEIN 1 rapidly responds to nitrogen deficiency and improves yield and nitrogen use efficiency	Therefore, our results demonstrate that OsNLP1 is a key regulator of N utilization and represents a potential target for improving NUE and yield in rice
OsNLP1	Os03g0131100	LOC_Os03g03900	nucleus	Rice NIN-LIKE PROTEIN 1 rapidly responds to nitrogen deficiency and improves yield and nitrogen use efficiency	OsNLP1 protein localizes in nucleus and its transcript level is rapidly induced by N starvation
OsNLP1	Os03g0131100	LOC_Os03g03900	plant growth	Rice NIN-LIKE PROTEIN 1 rapidly responds to nitrogen deficiency and improves yield and nitrogen use efficiency	Overexpression of OsNLP1 improves plant growth, grain yield and NUE under different N conditions while knockout of OsNLP1 impairs grain yield and NUE under N limiting conditions
OsNLP1	Os03g0131100	LOC_Os03g03900	nitrate	Rice NIN-LIKE PROTEIN 1 rapidly responds to nitrogen deficiency and improves yield and nitrogen use efficiency	OsNLP1 regulates nitrate and ammonium utilization by cooperatively orchestrating multiple N uptake and assimilation genes
OsNLP4	Os09g0549450	LOC_Os09g37710	nitrogen	Enhanced OsNLP4-OsNiR cascade confers nitrogen use efficiency by promoting tiller number in rice	We found that OsNLP4 transactivated OsNiR encoding nitrite reductase that was critical in nitrogen assimilation in rice
OsNLP4	Os09g0549450	LOC_Os09g37710	yield	Rice NIN-LIKE PROTEIN 4 plays a pivotal role in nitrogen use efficiency	In contrast, the OsNLP4 overexpression lines remarkably increased yield by 30% and NUE by 47% under moderate N level compared with wild type
OsNLP4	Os09g0549450	LOC_Os09g37710	biomass	Rice NIN-LIKE PROTEIN 4 plays a pivotal role in nitrogen use efficiency	Moreover, overexpression of OsNLP4 can recover the phenotype of Arabidopsis nlp7 mutant and enhance its biomass
OsNLP4	Os09g0549450	LOC_Os09g37710	nitrogen	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	In recent years, NIN-like proteins (NLPs) have been described as key transcription factors of nitrogen responses in Arabidopsis thaliana, which implies that OsNLP4 is involved in the regulation of nitrate assimilation and nitrogen use efficiency in rice
OsNLP4	Os09g0549450	LOC_Os09g37710	transcription factor	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	In recent years, NIN-like proteins (NLPs) have been described as key transcription factors of nitrogen responses in Arabidopsis thaliana, which implies that OsNLP4 is involved in the regulation of nitrate assimilation and nitrogen use efficiency in rice
OsNLP4	Os09g0549450	LOC_Os09g37710	growth	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate
OsNLP4	Os09g0549450	LOC_Os09g37710	growth	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	Here, we show that OsNLP4 can influence plant growth by affecting nitrate reductase (NR) activity
OsNLP4	Os09g0549450	LOC_Os09g37710	growth	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	The growth of OsNLP4 knockdown mutants was reduced when nitrate was supply, but not when ammonium was supply
OsNLP4	Os09g0549450	LOC_Os09g37710	growth	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	We propose that, in addition to the regulation of gene expression within the nitrate signaling pathway, OsNLP4 can affect the NR activity and nitrate-dependent growth of rice
OsNLP4	Os09g0549450	LOC_Os09g37710	plant growth	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	Here, we show that OsNLP4 can influence plant growth by affecting nitrate reductase (NR) activity
OsNLP4	Os09g0549450	LOC_Os09g37710	iron	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	Furthermore, the concentrations of iron and molybdenum, essential elements for NR activity, were reduced in OsNLP4 knockdown mutants
OsNLP4	Os09g0549450	LOC_Os09g37710	nitrate	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate
OsNLP4	Os09g0549450	LOC_Os09g37710	nitrate	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	In recent years, NIN-like proteins (NLPs) have been described as key transcription factors of nitrogen responses in Arabidopsis thaliana, which implies that OsNLP4 is involved in the regulation of nitrate assimilation and nitrogen use efficiency in rice
OsNLP4	Os09g0549450	LOC_Os09g37710	nitrate	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	Here, we show that OsNLP4 can influence plant growth by affecting nitrate reductase (NR) activity
OsNLP4	Os09g0549450	LOC_Os09g37710	nitrate	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	The growth of OsNLP4 knockdown mutants was reduced when nitrate was supply, but not when ammonium was supply
OsNLP4	Os09g0549450	LOC_Os09g37710	nitrate	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	The nitrate concentration was significantly reduced in osnlp4 mutants
OsNLP4	Os09g0549450	LOC_Os09g37710	nitrate	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	We propose that, in addition to the regulation of gene expression within the nitrate signaling pathway, OsNLP4 can affect the NR activity and nitrate-dependent growth of rice
OsNLP4	Os09g0549450	LOC_Os09g37710	nitrate	Growth and nitrate reductase activity are impaired in rice osnlp4 mutantssupplied with nitrate	Our results support a working model for the role of OsNLP4 in the nitrate signaling pathway
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	OsNMCP1 overexpression resulted in a deeper and thicker root system and enhanced drought resistance compared to the wild-type control
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	The reported drought resistance or root growth related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	The reported drought resistance or root growth related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	OsNMCP1 overexpression resulted in a deeper and thicker root system and enhanced drought resistance compared to the wild-type control
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	The reported drought resistance or root growth related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We report that OsNMCP1 is localized at the nuclear periphery and induced by drought stress
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	OsNMCP1 overexpression resulted in a deeper and thicker root system and enhanced drought resistance compared to the wild-type control
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	The reported drought resistance or root growth related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We report that OsNMCP1 is localized at the nuclear periphery and induced by drought stress
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	The reported drought resistance or root growth related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We report that OsNMCP1 is localized at the nuclear periphery and induced by drought stress
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	The reported drought resistance or root growth related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	OsNMCP1 overexpression resulted in a deeper and thicker root system and enhanced drought resistance compared to the wild-type control
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	The reported drought resistance or root growth related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	The reported drought resistance or root growth related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	The reported drought resistance or root growth related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	OsNMCP1 overexpression resulted in a deeper and thicker root system, and enhanced drought resistance compared to the wild-type control
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	OsNMCP1 overexpression resulted in a deeper and thicker root system, and enhanced drought resistance compared to the wild-type control
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We report that OsNMCP1 is localized at the nuclear periphery in rice (Oryza sativa) and induced by drought stress
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	OsNMCP1 overexpression resulted in a deeper and thicker root system, and enhanced drought resistance compared to the wild-type control
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We report that OsNMCP1 is localized at the nuclear periphery in rice (Oryza sativa) and induced by drought stress
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We report that OsNMCP1 is localized at the nuclear periphery in rice (Oryza sativa) and induced by drought stress
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	root growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	OsNMCP1 overexpression resulted in a deeper and thicker root system, and enhanced drought resistance compared to the wild-type control
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsNMCP1	Os02g0709900|Os02g0710102	LOC_Os02g48010	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	A dominant negative form of OsNMD3 with a truncated nuclear localization sequence (OsNMD3(deltaNLS)) was retained in the cytoplasm, consequently interfering with the release of OsNMD3 from pre-60S particles and disturbing the assembly of ribosome subunits
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Moreover, global expression profiles of the wild-type and transgenic plants were investigated using the Illumina RNA sequencing approach
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	A dominant negative form of OsNMD3 with a truncated nuclear localization sequence (OsNMD3(deltaNLS)) was retained in the cytoplasm, consequently interfering with the release of OsNMD3 from pre-60S particles and disturbing the assembly of ribosome subunits
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Moreover, global expression profiles of the wild-type and transgenic plants were investigated using the Illumina RNA sequencing approach
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cytoplasm	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
OsNMD3	Os10g0573900	LOC_Os10g42320	cytoplasm	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	sativa NMD3 (OsNMD3) shares all the common motifs and shuttles between the nucleus and cytoplasm via CRM1/XPO1
OsNMD3	Os10g0573900	LOC_Os10g42320	cytoplasm	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	A dominant negative form of OsNMD3 with a truncated nuclear localization sequence (OsNMD3(deltaNLS)) was retained in the cytoplasm, consequently interfering with the release of OsNMD3 from pre-60S particles and disturbing the assembly of ribosome subunits
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	plant growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	development	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	development	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	A dominant negative form of OsNMD3 with a truncated nuclear localization sequence (OsNMD3(deltaNLS)) was retained in the cytoplasm, consequently interfering with the release of OsNMD3 from pre-60S particles and disturbing the assembly of ribosome subunits
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Moreover, global expression profiles of the wild-type and transgenic plants were investigated using the Illumina RNA sequencing approach
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	development	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	A dominant negative form of OsNMD3 with a truncated nuclear localization sequence (OsNMD3(deltaNLS)) was retained in the cytoplasm, consequently interfering with the release of OsNMD3 from pre-60S particles and disturbing the assembly of ribosome subunits
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Moreover, global expression profiles of the wild-type and transgenic plants were investigated using the Illumina RNA sequencing approach
OsNMD3	Os10g0573900	LOC_Os10g42320	plant development	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
OsNMD3	Os10g0573900	LOC_Os10g42320	development	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	nucleus	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	sativa NMD3 (OsNMD3) shares all the common motifs and shuttles between the nucleus and cytoplasm via CRM1/XPO1
OsNMD3	Os10g0573900	LOC_Os10g42320	Pi	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	SA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	This study chose a highly conserved trans-factor, the 60S ribosomal subunit nuclear export adaptor NMD3, to characterize the mechanism of ribosome biogenesis in the monocot plant Oryza sativa (rice)
OsNMD3	Os10g0573900	LOC_Os10g42320	SA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	sativa NMD3 (OsNMD3) shares all the common motifs and shuttles between the nucleus and cytoplasm via CRM1/XPO1
OsNMD3	Os10g0573900	LOC_Os10g42320	SA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	A dominant negative form of OsNMD3 with a truncated nuclear localization sequence (OsNMD3(deltaNLS)) was retained in the cytoplasm, consequently interfering with the release of OsNMD3 from pre-60S particles and disturbing the assembly of ribosome subunits
OsNMD3	Os10g0573900	LOC_Os10g42320	GA	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Moreover, global expression profiles of the wild-type and transgenic plants were investigated using the Illumina RNA sequencing approach
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	cellulose	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Analyses of the transactivation activity and cellulose biosynthesis level revealed low protein synthesis efficiency in the transgenic plants compared with the wild-type plants
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	plant development	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
OsNMD3	Os10g0573900	LOC_Os10g42320	development	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	development	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNMD3	Os10g0573900	LOC_Os10g42320	growth	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	These expression profiles suggested that overexpression of OsNMD3(deltaNLS) affected ribosome biogenesis and certain basic pathways, leading to pleiotropic abnormalities in plant growth
OsNOA1	Os02g0104700	LOC_Os02g01440	root	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	OsNOA1 transgenic expression rescued Atnoa1 in seedling development and vegetative growth under normal conditions, enhanced the salt tolerance of Atnoa1 in seed germination, seedling root growth and chlorophyll synthesis, and reduced Na+/K+ ratio in Atnoa1; NO relative content assay implicates that NO synthesis was re-established via OsNOA1 expression in Atnoa1; Northern blot and Semi-Q RT-PCR assays demonstrate that salt tolerance-related gene expression was re-established as well via OsNOA1 expression in Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	seedling	NOA1 functions in a temperature-dependent manner to regulate chlorophyll biosynthesis and Rubisco formation in rice	On the other hand, de-etiolated OsNOA1-silenced seedlings maintained similar levels of chlorophyll and Rubisco as WT, even after being shifted to 15 degrees C for various times
OsNOA1	Os02g0104700	LOC_Os02g01440	chloroplast	OsNOA1/RIF1 is a functional homolog of AtNOA1/RIF1: implication for a highly conserved plant cGTPase essential for chloroplast function	The OsNOA1/RIF1-EYFP fusion protein was targeted to chloroplasts in transgenic Arabidopsis plants
OsNOA1	Os02g0104700	LOC_Os02g01440	chloroplast	OsNOA1/RIF1 is a functional homolog of AtNOA1/RIF1: implication for a highly conserved plant cGTPase essential for chloroplast function	*Quantitative iTRAQ-LC-MS/MS proteomics investigations revealed proteome changes in the rice mutant consistent with the expected functional role of OsNOA1/RIF1 in chloroplast translation
OsNOA1	Os02g0104700	LOC_Os02g01440	chloroplast	OsNOA1/RIF1 is a functional homolog of AtNOA1/RIF1: implication for a highly conserved plant cGTPase essential for chloroplast function	OsNOA1/RIF1 is a functional homolog of AtNOA1/RIF1: implication for a highly conserved plant cGTPase essential for chloroplast function
OsNOA1	Os02g0104700	LOC_Os02g01440	growth	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	OsNOA1 transgenic expression rescued Atnoa1 in seedling development and vegetative growth under normal conditions, enhanced the salt tolerance of Atnoa1 in seed germination, seedling root growth and chlorophyll synthesis, and reduced Na+/K+ ratio in Atnoa1; NO relative content assay implicates that NO synthesis was re-established via OsNOA1 expression in Atnoa1; Northern blot and Semi-Q RT-PCR assays demonstrate that salt tolerance-related gene expression was re-established as well via OsNOA1 expression in Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	seedling	OsNOA1/RIF1 is a functional homolog of AtNOA1/RIF1: implication for a highly conserved plant cGTPase essential for chloroplast function	*Rice (Oryza sativa) OsNOA1/RIF1 RNAi mutant seedlings were chlorotic with reduced pigment contents and lower photosystem II (PSII) efficiency
OsNOA1	Os02g0104700	LOC_Os02g01440	seed	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	OsNOA1 transgenic expression rescued Atnoa1 in seedling development and vegetative growth under normal conditions, enhanced the salt tolerance of Atnoa1 in seed germination, seedling root growth and chlorophyll synthesis, and reduced Na+/K+ ratio in Atnoa1; NO relative content assay implicates that NO synthesis was re-established via OsNOA1 expression in Atnoa1; Northern blot and Semi-Q RT-PCR assays demonstrate that salt tolerance-related gene expression was re-established as well via OsNOA1 expression in Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	salt tolerance	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	OsNOA1 transgenic expression rescued Atnoa1 in seedling development and vegetative growth under normal conditions, enhanced the salt tolerance of Atnoa1 in seed germination, seedling root growth and chlorophyll synthesis, and reduced Na+/K+ ratio in Atnoa1; NO relative content assay implicates that NO synthesis was re-established via OsNOA1 expression in Atnoa1; Northern blot and Semi-Q RT-PCR assays demonstrate that salt tolerance-related gene expression was re-established as well via OsNOA1 expression in Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	salt tolerance	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	Our data indicate that the re-establishment of NO synthesis and salt tolerance-related gene expression by OsNOA1 expression may account for the restoration of Atnoa1 in terms of developmental and salt tolerance phenotypes
OsNOA1	Os02g0104700	LOC_Os02g01440	salt tolerance	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	All the above results point to a notion that OsNOA1 may play similar roles as AtNOA1, and NO involvement in salt tolerance may be ascribed to its regulation of salt tolerance-related gene expression
OsNOA1	Os02g0104700	LOC_Os02g01440	salt tolerance	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	salt	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	OsNOA1 transgenic expression rescued Atnoa1 in seedling development and vegetative growth under normal conditions, enhanced the salt tolerance of Atnoa1 in seed germination, seedling root growth and chlorophyll synthesis, and reduced Na+/K+ ratio in Atnoa1; NO relative content assay implicates that NO synthesis was re-established via OsNOA1 expression in Atnoa1; Northern blot and Semi-Q RT-PCR assays demonstrate that salt tolerance-related gene expression was re-established as well via OsNOA1 expression in Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	salt	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	Our data indicate that the re-establishment of NO synthesis and salt tolerance-related gene expression by OsNOA1 expression may account for the restoration of Atnoa1 in terms of developmental and salt tolerance phenotypes
OsNOA1	Os02g0104700	LOC_Os02g01440	salt	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	All the above results point to a notion that OsNOA1 may play similar roles as AtNOA1, and NO involvement in salt tolerance may be ascribed to its regulation of salt tolerance-related gene expression
OsNOA1	Os02g0104700	LOC_Os02g01440	salt	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	seedling	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	OsNOA1 transgenic expression rescued Atnoa1 in seedling development and vegetative growth under normal conditions, enhanced the salt tolerance of Atnoa1 in seed germination, seedling root growth and chlorophyll synthesis, and reduced Na+/K+ ratio in Atnoa1; NO relative content assay implicates that NO synthesis was re-established via OsNOA1 expression in Atnoa1; Northern blot and Semi-Q RT-PCR assays demonstrate that salt tolerance-related gene expression was re-established as well via OsNOA1 expression in Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	temperature	NOA1 functions in a temperature-dependent manner to regulate chlorophyll biosynthesis and Rubisco formation in rice	Etiolated OsNOA1-silenced plants accumulated chlorophyll and Rubisco to normal levels only at 30 degrees C, and lost this ability at low temperature
OsNOA1	Os02g0104700	LOC_Os02g01440	temperature	NOA1 functions in a temperature-dependent manner to regulate chlorophyll biosynthesis and Rubisco formation in rice	Overall, our results suggest OsNOA1 functions in a temperature-dependent manner to regulate chlorophyll biosynthesis, Rubisco formation and plastid development in rice
OsNOA1	Os02g0104700	LOC_Os02g01440	seed germination	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	OsNOA1 transgenic expression rescued Atnoa1 in seedling development and vegetative growth under normal conditions, enhanced the salt tolerance of Atnoa1 in seed germination, seedling root growth and chlorophyll synthesis, and reduced Na+/K+ ratio in Atnoa1; NO relative content assay implicates that NO synthesis was re-established via OsNOA1 expression in Atnoa1; Northern blot and Semi-Q RT-PCR assays demonstrate that salt tolerance-related gene expression was re-established as well via OsNOA1 expression in Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	vegetative	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	OsNOA1 transgenic expression rescued Atnoa1 in seedling development and vegetative growth under normal conditions, enhanced the salt tolerance of Atnoa1 in seed germination, seedling root growth and chlorophyll synthesis, and reduced Na+/K+ ratio in Atnoa1; NO relative content assay implicates that NO synthesis was re-established via OsNOA1 expression in Atnoa1; Northern blot and Semi-Q RT-PCR assays demonstrate that salt tolerance-related gene expression was re-established as well via OsNOA1 expression in Atnoa1
OsNOA1	Os02g0104700	LOC_Os02g01440	salinity	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1	We employed the knockout mutant for AtNOA1, Atnoa1 that is sensitive to salinity, as a tool to evaluate the functions of a rice homologous gene, OsNOA1
OsNOA1	Os02g0104700	LOC_Os02g01440	chloroplast	OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures.	OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures.
OsNOA1	Os02g0104700	LOC_Os02g01440	chloroplast	OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures.	Additionally, our data showed 90% of the suppressed proteins in both types of transgenic plants at lower temperatures were located in the chloroplast, suggesting a primary effect of OsNOA1 on chloroplast proteins
OsNOA1	Os02g0104700	LOC_Os02g01440	chloroplast	OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures.	Transcript analyses, along with in vitro pull-down experiments further demonstrated OsNOA1 is associated with the function of chloroplast ribosomes
OsNOA1	Os02g0104700	LOC_Os02g01440	chloroplast	OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures.	Our results suggest OsNOA1 functions in a threshold-dependent manner for regulation of chloroplast proteins at lower temperatures, which may be mediated by interactions between OsNOA1 and chloroplast ribosomes
OsNOMT	Os12g0240900	LOC_Os12g13800	jasmonic	Purification and identification of naringenin 7-O-methyltransferase, a key enzyme in biosynthesis of flavonoid phytoalexin sakuranetin in rice	Os12g0240900 expression was induced by jasmonic acid treatment in rice leaves prior to sakuranetin accumulation, and the Os12g0240900 protein showed reasonable kinetic properties to OsNOMT
OsNOMT	Os12g0240900	LOC_Os12g13800	jasmonic acid	Purification and identification of naringenin 7-O-methyltransferase, a key enzyme in biosynthesis of flavonoid phytoalexin sakuranetin in rice	Os12g0240900 expression was induced by jasmonic acid treatment in rice leaves prior to sakuranetin accumulation, and the Os12g0240900 protein showed reasonable kinetic properties to OsNOMT
Osnop	Os06g0607900	LOC_Os06g40570	sterile	The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein	Phenotype screens of Ds insertional lines identified a male sterile Orysa sativa no pollen (Osnop) mutant with a pollen-less phenotype at the flowering stage
Osnop	Os06g0607900	LOC_Os06g40570	pollen	The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein	Phenotype screens of Ds insertional lines identified a male sterile Orysa sativa no pollen (Osnop) mutant with a pollen-less phenotype at the flowering stage
Osnop	Os06g0607900	LOC_Os06g40570	pollen	The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein	Thus, the delegen 14 gene is the best candidate for Osnop, corresponding to the pollen-less phenotype in the mutant
Osnop	Os06g0607900	LOC_Os06g40570	pollen	The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein	The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein
Osnop	Os06g0607900	LOC_Os06g40570	flower	The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein	Phenotype screens of Ds insertional lines identified a male sterile Orysa sativa no pollen (Osnop) mutant with a pollen-less phenotype at the flowering stage
OsNP1	Os10g0524500	LOC_Os10g38050	growth	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	The osnp1 mutant plant displays normal vegetative growth but complete male sterility insensitive to environmental conditions
OsNP1	Os10g0524500	LOC_Os10g38050	pollen	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	OsNP1 encodes a putative glucose-methanol-choline oxidoreductase regulating tapetum degeneration and pollen exine formation; it is specifically expressed in the tapetum and miscrospores
OsNP1	Os10g0524500	LOC_Os10g38050	pollen	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	OsNP1 was coupled with an alpha-amylase gene to devitalize transgenic pollen and the red fluorescence protein (DsRed) gene to mark transgenic seed and transformed into the osnp1 mutant
OsNP1	Os10g0524500	LOC_Os10g38050	sterility	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	The osnp1 mutant plant displays normal vegetative growth but complete male sterility insensitive to environmental conditions
OsNP1	Os10g0524500	LOC_Os10g38050	seed	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	OsNP1 was coupled with an alpha-amylase gene to devitalize transgenic pollen and the red fluorescence protein (DsRed) gene to mark transgenic seed and transformed into the osnp1 mutant
OsNP1	Os10g0524500	LOC_Os10g38050	vegetative	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	The osnp1 mutant plant displays normal vegetative growth but complete male sterility insensitive to environmental conditions
OsNP1	Os10g0524500	LOC_Os10g38050	tapetum	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	OsNP1 encodes a putative glucose-methanol-choline oxidoreductase regulating tapetum degeneration and pollen exine formation; it is specifically expressed in the tapetum and miscrospores
OsNP1	Os10g0524500	LOC_Os10g38050	male sterility	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	The osnp1 mutant plant displays normal vegetative growth but complete male sterility insensitive to environmental conditions
OsNP1	Os10g0524500	LOC_Os10g38050	pollen exine formation	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	OsNP1 encodes a putative glucose-methanol-choline oxidoreductase regulating tapetum degeneration and pollen exine formation; it is specifically expressed in the tapetum and miscrospores
OsNPC3	Os11g0593000	LOC_Os11g38050	ABA sensitivity	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions	The expression of the ABA biosynthetic gene OsAO3 is downregulated in OsERF106MZ-overexpressing roots under normal conditions, while the expression of OsNPC3, an AtNPC4 homolog involved in ABA sensitivity, is reduced in OsERF106MZ-overexpressing roots under both normal and NaCl-treated conditions.
OsNPF2.2	Os12g0638200	LOC_Os12g44100	transporter	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.
OsNPF2.2	Os12g0638200	LOC_Os12g44100	nitrate	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.
OsNPF2.2	Os12g0638200	LOC_Os12g44100	vascular development	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.
OsNPF2.2	Os12g0638200	LOC_Os12g44100	nitrate transporter	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.
OsNPF2.4	Os03g0687000	LOC_Os03g48180	nitrate transporter	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport
OsNPF2.4	Os03g0687000	LOC_Os03g48180	nitrate	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport
OsNPF2.4	Os03g0687000	LOC_Os03g48180	plasma membrane	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport	In this study, we showed that rice OsNPF2.4 is located in the plasma membrane and is expressed mainly in the epidermis, xylem parenchyma, and phloem companion cells
OsNPF2.4	Os03g0687000	LOC_Os03g48180	epidermis	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport	In this study, we showed that rice OsNPF2.4 is located in the plasma membrane and is expressed mainly in the epidermis, xylem parenchyma, and phloem companion cells
OsNPF2.4	Os03g0687000	LOC_Os03g48180	xylem parenchyma	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport	In this study, we showed that rice OsNPF2.4 is located in the plasma membrane and is expressed mainly in the epidermis, xylem parenchyma, and phloem companion cells
OsNPF2.4	Os03g0687000	LOC_Os03g48180	NO3- transporter	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport	Functional analysis in oocytes showed that OsNPF2.4 is a pH-dependent, low-affinity NO3- transporter.
OsNPF4.5	Os01g0748950	LOC_Os01g54515	nitrogen	Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants.	Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants.
OsNPF4.5	Os01g0748950	LOC_Os01g54515	transporter	Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants.	Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants.
OsNPF4.5	Os01g0748950	LOC_Os01g54515	nitrate	Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants.	Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants.
OsNPF4.5	Os01g0748950	LOC_Os01g54515	nitrate transporter	Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants.	Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants.
OsNPF6.1	Os01g0103100	LOC_Os01g01360	nitrate	Genome-wide associated study identifies NAC42-activated nitrate transporter conferring high nitrogen use efficiency in rice	In addition to root, we also observed its expression on rice lamina joint (Supplementary Fig. 8g, h), so we believed that OsNPF6.1 played roles in direct uptake and redistribution of nitrate.
OsNPF7.1	Os07g0603800	LOC_Os07g41250	tillering	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.
OsNPF7.1	Os07g0603800	LOC_Os07g41250	grain	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.
OsNPF7.1	Os07g0603800	LOC_Os07g41250	grain yield	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.
OsNPF7.1	Os07g0603800	LOC_Os07g41250	yield	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	growth	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	transporter	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	nitrate	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	nitrate transporter	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	grain	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	tiller	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	grain yield	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	transporter	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	tiller number	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	nitrate	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
OsNPF7.2	Os02g0699000	LOC_Os02g47090	nitrate transporter	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
OsNPF7.4	Os04g0597600	LOC_Os04g50940	tillering	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.
OsNPF7.4	Os04g0597600	LOC_Os04g50940	grain	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.
OsNPF7.4	Os04g0597600	LOC_Os04g50940	grain yield	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.
OsNPF7.4	Os04g0597600	LOC_Os04g50940	yield	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.
OsNPF7.6	Os04g0597400|Os04g0597501	LOC_Os04g50930	nitrogen	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.
OsNPF7.6	Os04g0597400|Os04g0597501	LOC_Os04g50930	yield	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.
OsNPF7.6	Os04g0597400|Os04g0597501	LOC_Os04g50930	transporter	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.
OsNPF7.6	Os04g0597400|Os04g0597501	LOC_Os04g50930	nitrate	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.
OsNPF7.6	Os04g0597400|Os04g0597501	LOC_Os04g50930	nitrate transporter	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.	Overexpression of Nitrate Transporter 1/Peptide Gene OsNPF7.6 Increases Rice Yield and Nitrogen Use Efficiency.
OsNPF7.7	Os10g0579600	LOC_Os10g42870	root	Two Splicing Variants of OsNPF7.7 Regulate Shoot Branching and Nitrogen Utilization Efficiency in Rice	Overexpression of OsNPF7.7-1 could promote nitrate influx and concentration in root, whereas overexpression of OsNPF7.7-2 could improve ammonium influx and concentration in root.
OsNPF7.9	Os02g0689900	LOC_Os02g46460	transporter	The nitrate transporter OsNPF7.9 mediates nitrate allocation and the divergent nitrate use efficiency between indica and japonica rice.	The nitrate transporter OsNPF7.9 mediates nitrate allocation and the divergent nitrate use efficiency between indica and japonica rice.
OsNPF7.9	Os02g0689900	LOC_Os02g46460	nitrate	The nitrate transporter OsNPF7.9 mediates nitrate allocation and the divergent nitrate use efficiency between indica and japonica rice.	The nitrate transporter OsNPF7.9 mediates nitrate allocation and the divergent nitrate use efficiency between indica and japonica rice.
OsNPF7.9	Os02g0689900	LOC_Os02g46460	nitrate transporter	The nitrate transporter OsNPF7.9 mediates nitrate allocation and the divergent nitrate use efficiency between indica and japonica rice.	The nitrate transporter OsNPF7.9 mediates nitrate allocation and the divergent nitrate use efficiency between indica and japonica rice.
OsNPH1b	Os04g0304200	LOC_Os04g23890	seedlings	Rice NPH1 homologues, OsNPH1a and OsNPH1b, are differently photoregulated.	Northern blot analysis showed that OsNPH1a was strongly expressed in coleoptiles, whereas OsNPH1b was highly expressed in leaves of dark-grown rice seedlings
OsNPH1b	Os04g0304200	LOC_Os04g23890	seedlings	Rice NPH1 homologues, OsNPH1a and OsNPH1b, are differently photoregulated.	When the dark-grown seedlings were transferred to the continuous white light, the abundance of the OsNPH1a transcript in coleoptiles rapidly declined to the minimum levels, whereas the OsNPH1b transcript level in leaves gradually increased
OsNPH1b	Os04g0304200	LOC_Os04g23890	seedlings	Rice NPH1 homologues, OsNPH1a and OsNPH1b, are differently photoregulated.	These results lead us to conclude that expression of OsNPH1a and OsNPH1b is differently photoregulated in different tissues of rice seedlings
OsNPK1-PK|OsMAPKKK62|OsMKKK62	Os01g0699600	LOC_Os01g50420	pollen	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Considering the effect of functional redundancy, we further tested the CTB response of osmkkk62/70 and osmkkk55/62/70, the double and triple mutants of OsMKKK70 with its closest homologs OsMKKK62 and OsMKKK55, and found that osmkkk62/70 and osmkkk55/62/70 displayed significantly increased CTB with a higher seed setting and pollen fertility, indicating that OsMKKK70 negatively regulates rice CTB
OsNPK1-PK|OsMAPKKK62|OsMKKK62	Os01g0699600	LOC_Os01g50420	seed	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Considering the effect of functional redundancy, we further tested the CTB response of osmkkk62/70 and osmkkk55/62/70, the double and triple mutants of OsMKKK70 with its closest homologs OsMKKK62 and OsMKKK55, and found that osmkkk62/70 and osmkkk55/62/70 displayed significantly increased CTB with a higher seed setting and pollen fertility, indicating that OsMKKK70 negatively regulates rice CTB
OsNPK1-PK|OsMAPKKK62|OsMKKK62	Os01g0699600	LOC_Os01g50420	Pollen Fertility	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Considering the effect of functional redundancy, we further tested the CTB response of osmkkk62/70 and osmkkk55/62/70, the double and triple mutants of OsMKKK70 with its closest homologs OsMKKK62 and OsMKKK55, and found that osmkkk62/70 and osmkkk55/62/70 displayed significantly increased CTB with a higher seed setting and pollen fertility, indicating that OsMKKK70 negatively regulates rice CTB
OsNPK1-PK|OsMAPKKK62|OsMKKK62	Os01g0699600	LOC_Os01g50420	seed set	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Considering the effect of functional redundancy, we further tested the CTB response of osmkkk62/70 and osmkkk55/62/70, the double and triple mutants of OsMKKK70 with its closest homologs OsMKKK62 and OsMKKK55, and found that osmkkk62/70 and osmkkk55/62/70 displayed significantly increased CTB with a higher seed setting and pollen fertility, indicating that OsMKKK70 negatively regulates rice CTB
OsNPPR3|FLO14	Os03g0728200	LOC_Os03g51840	development	Lose-of-Function of a Rice Nucleolus-Localized Pentatricopeptide Repeat Protein Is Responsible for the floury endosperm14 Mutant Phenotypes.	Quantitative RT-PCR analysis demonstrated that OsNPPR3 was universally expressed in various tissues, with pronounced levels during rice endosperm development
OsNPPR3|FLO14	Os03g0728200	LOC_Os03g51840	mitochondria	Lose-of-Function of a Rice Nucleolus-Localized Pentatricopeptide Repeat Protein Is Responsible for the floury endosperm14 Mutant Phenotypes.	Molecular analysis further suggested that OsNPPR3 was involved in the regulation of expression levels and splicing of a few genes in mitochondria
OsNPPR3|FLO14	Os03g0728200	LOC_Os03g51840	endosperm	Lose-of-Function of a Rice Nucleolus-Localized Pentatricopeptide Repeat Protein Is Responsible for the floury endosperm14 Mutant Phenotypes.	Quantitative RT-PCR analysis demonstrated that OsNPPR3 was universally expressed in various tissues, with pronounced levels during rice endosperm development
OsNPPR3|FLO14	Os03g0728200	LOC_Os03g51840	endosperm development	Lose-of-Function of a Rice Nucleolus-Localized Pentatricopeptide Repeat Protein Is Responsible for the floury endosperm14 Mutant Phenotypes.	Quantitative RT-PCR analysis demonstrated that OsNPPR3 was universally expressed in various tissues, with pronounced levels during rice endosperm development
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	ethylene	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	The antisense expression of OsNPR1 (as-npr1), which reduced the expression of the gene by 50%, increased elicited levels of JA and ethylene (ET) as well as of expression of a lipoxygenase gene OsHI-LOX and an ACC synthase gene OsACS2
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	ethylene	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	jasmonic	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	Here, using suppressive substrate hybridization, we identified a NPR1 gene from rice, OsNPR1, and found that its expression levels were upregulated in response to infestation by the rice striped stem borer (SSB) Chilo suppressalis and rice leaf folder (LF) Cnaphalocrocis medinalis, and to mechanical wounding and treatment with jasmonic acid (JA) and salicylic acid (SA)
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	jasmonic acid	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	Here, using suppressive substrate hybridization, we identified a NPR1 gene from rice, OsNPR1, and found that its expression levels were upregulated in response to infestation by the rice striped stem borer (SSB) Chilo suppressalis and rice leaf folder (LF) Cnaphalocrocis medinalis, and to mechanical wounding and treatment with jasmonic acid (JA) and salicylic acid (SA)
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	defense	OsWRKY71, a rice transcription factor, is involved in rice defense response	Furthermore, two marker genes in defense signaling pathway, OsNPR1 and OsPR1b, were constitutively expressed in OsWRKY71-overexpressing transgenic plants
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	defense	OsWRKY71, a rice transcription factor, is involved in rice defense response	These results suggest that OsWRKY71 might function as a transcriptional regulator upstream of OsNPR1 and OsPR1b in rice defense signaling pathways
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	sa	Cytokinins act synergistically with salicylic acid to activate defense gene expression in rice	These effects were diminished by RNAi-knockdown of OsNPR1 or WRKY45, the key regulators of the SA signaling pathway in rice, indicating that the effects of CK depend on these two regulators
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blast	Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence	1 and NH1, in the establishment of full basal resistance to rice blast
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blight	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	OsNPR1/NH1, a rice homolog of NPR1 that is the key regulator of systemic acquired resistance in Arabidopsis thaliana, was shown to be involved in the resistance of rice to bacterial blight disease caused by Xanthomonas oryzae pv
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	magnaporthe oryzae	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blight	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	In our study, three rice homologous genes, OsNPR1/NH1, OsNPR2/NH2 and OsNPR3, were found to be induced by rice bacterial blight Xanthomonas oryzae pv
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blight	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Over-expression of OsNPR1 conferred disease resistance to bacterial blight, but also enhanced herbivore susceptibility in transgenic plants
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blight	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	In our study, three rice homologous genes, OsNPR1/NH1, OsNPR2/NH2 and OsNPR3, were found to be induced by rice bacterial blight Xanthomonas oryzae pv
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	sa	Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light	These results indicate that NH1 may be involved in the regulation of SA in response to environmental changes
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	leaf	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	Here, using suppressive substrate hybridization, we identified a NPR1 gene from rice, OsNPR1, and found that its expression levels were upregulated in response to infestation by the rice striped stem borer (SSB) Chilo suppressalis and rice leaf folder (LF) Cnaphalocrocis medinalis, and to mechanical wounding and treatment with jasmonic acid (JA) and salicylic acid (SA)
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	defense	Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light	Northern analysis shows that NH1ox rice spontaneously activates defense genes, contrasting with NPR1-overexpressing Arabidopsis, where defense genes are not activated until induction
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	sa	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Different subcellular localizations of OsNPR1 antagonistically regulated SA- and jasmonic acid (JA)-responsive genes, but not SA and JA levels, indicating that OsNPR1 might mediate antagonistic cross-talk between the SA- and JA-dependent pathways in rice
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	bacterial blight	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	In our study, three rice homologous genes, OsNPR1/NH1, OsNPR2/NH2 and OsNPR3, were found to be induced by rice bacterial blight Xanthomonas oryzae pv
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	jasmonic acid	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Different subcellular localizations of OsNPR1 antagonistically regulated SA- and jasmonic acid (JA)-responsive genes, but not SA and JA levels, indicating that OsNPR1 might mediate antagonistic cross-talk between the SA- and JA-dependent pathways in rice
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	transcription factor	Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light	Wild-type NH1, but not a point mutant corresponding to npr1-1, interacts strongly with the rice transcription factor rTGA2
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	resistant	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	The resistant plants showed increased expression of a subset of defense-responsive genes functioning in the NH1 (an Arabidopsis NPR1 orthologue)-involved defense signal transduction pathway
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	ja	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	The antisense expression of OsNPR1 (as-npr1), which reduced the expression of the gene by 50%, increased elicited levels of JA and ethylene (ET) as well as of expression of a lipoxygenase gene OsHI-LOX and an ACC synthase gene OsACS2
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	ja	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	dwarf	Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light	However, when grown in growth chambers (GCs) under low light, NH1ox plants are dwarfed, indicating elevated sensitivity to light
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	flower	Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light	Greenhouse-grown NH1ox plants develop lesion-mimic spots on leaves at preflowering stage although no other developmental effects are observed
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	defense response	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	Our results suggest that OsNPR1 is an early responding gene in herbivore-induced defense and that plants can use it to activate a specific and appropriate defense response against invaders by modulating signaling pathways
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	growth	Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light	However, when grown in growth chambers (GCs) under low light, NH1ox plants are dwarfed, indicating elevated sensitivity to light
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease resistance	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	transcription factor	Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice	TGA transcription factors are well known to participate in NPR1/NH1-mediated defense signaling, which is crucial to systemic acquired resistance in plants
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blight disease	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	OsNPR1/NH1, a rice homolog of NPR1 that is the key regulator of systemic acquired resistance in Arabidopsis thaliana, was shown to be involved in the resistance of rice to bacterial blight disease caused by Xanthomonas oryzae pv
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blast	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	However, the role of OsNPR1/NH1 in rice basal resistance to blast fungus M
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blast	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	salicylic acid	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	Here, using suppressive substrate hybridization, we identified a NPR1 gene from rice, OsNPR1, and found that its expression levels were upregulated in response to infestation by the rice striped stem borer (SSB) Chilo suppressalis and rice leaf folder (LF) Cnaphalocrocis medinalis, and to mechanical wounding and treatment with jasmonic acid (JA) and salicylic acid (SA)
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease resistance	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	oryzae, thus providing new insights into the role of OsNPR1 in rice disease resistance
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	bacterial blight	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	OsNPR1/NH1, a rice homolog of NPR1 that is the key regulator of systemic acquired resistance in Arabidopsis thaliana, was shown to be involved in the resistance of rice to bacterial blight disease caused by Xanthomonas oryzae pv
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease resistance	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Over-expression of OsNPR1 conferred disease resistance to bacterial blight, but also enhanced herbivore susceptibility in transgenic plants
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease resistance	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	defense	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	The resistant plants showed increased expression of a subset of defense-responsive genes functioning in the NH1 (an Arabidopsis NPR1 orthologue)-involved defense signal transduction pathway
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	jasmonic	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Different subcellular localizations of OsNPR1 antagonistically regulated SA- and jasmonic acid (JA)-responsive genes, but not SA and JA levels, indicating that OsNPR1 might mediate antagonistic cross-talk between the SA- and JA-dependent pathways in rice
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	defense	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	Our results suggest that OsNPR1 is an early responding gene in herbivore-induced defense and that plants can use it to activate a specific and appropriate defense response against invaders by modulating signaling pathways
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	OsNPR1/NH1, a rice homolog of NPR1 that is the key regulator of systemic acquired resistance in Arabidopsis thaliana, was shown to be involved in the resistance of rice to bacterial blight disease caused by Xanthomonas oryzae pv
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	bacterial blight	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	In our study, three rice homologous genes, OsNPR1/NH1, OsNPR2/NH2 and OsNPR3, were found to be induced by rice bacterial blight Xanthomonas oryzae pv
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	bacterial blight	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Over-expression of OsNPR1 conferred disease resistance to bacterial blight, but also enhanced herbivore susceptibility in transgenic plants
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Over-expression of OsNPR1 conferred disease resistance to bacterial blight, but also enhanced herbivore susceptibility in transgenic plants
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease resistance	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	defense	Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice	TGA transcription factors are well known to participate in NPR1/NH1-mediated defense signaling, which is crucial to systemic acquired resistance in plants
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	defense	Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice	Silencing of GLO1 results in enhanced resistance to Xoo, increased expression of defense regulators NH1, NH3, and WRKY45, and activation of PR1 expression
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blast	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	However, the role of OsNPR1/NH1 in rice basal resistance to blast fungus M
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blast	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	These results revealed that OsNPR1 is involved in rice basal resistance to the blast pathogen M
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	blast	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	ja	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility	Different subcellular localizations of OsNPR1 antagonistically regulated SA- and jasmonic acid (JA)-responsive genes, but not SA and JA levels, indicating that OsNPR1 might mediate antagonistic cross-talk between the SA- and JA-dependent pathways in rice
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	salicylic acid	Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light	The GC-grown NH1ox plants show much higher salicylic acid (SA) levels than the wild type, whereas greenhouse-grown NH1ox plants contain lower SA
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	stem	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice	Here, using suppressive substrate hybridization, we identified a NPR1 gene from rice, OsNPR1, and found that its expression levels were upregulated in response to infestation by the rice striped stem borer (SSB) Chilo suppressalis and rice leaf folder (LF) Cnaphalocrocis medinalis, and to mechanical wounding and treatment with jasmonic acid (JA) and salicylic acid (SA)
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	salicylic acid	Isolation and characterization of the rice NPR1 promoter	Expression of the rice gene OsNPR1 is induced by salicylic acid (SA)
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	OsNPR1/NH1, a rice homolog of NPR1 that is the key regulator of systemic acquired resistance in Arabidopsis thaliana, was shown to be involved in the resistance of rice to bacterial blight disease caused by Xanthomonas oryzae pv
OsNPR1|NH1	Os01g0194300	LOC_Os01g09800	disease	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	oryzae, thus providing new insights into the role of OsNPR1 in rice disease resistance
OsNR1	Os08g0468100	LOC_Os08g36480	seed germination	NLP2-NR Module Associated NO Is Involved in Regulating Seed Germination in Rice under Salt Stress	NLP2-NR Module Associated NO Is Involved in Regulating Seed Germination in Rice under Salt Stress
OsNR1	Os08g0468100	LOC_Os08g36480	salt stress	NLP2-NR Module Associated NO Is Involved in Regulating Seed Germination in Rice under Salt Stress	NLP2-NR Module Associated NO Is Involved in Regulating Seed Germination in Rice under Salt Stress
OsNRAMP1	Os07g0258400	LOC_Os07g15460	cadmium	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice
OsNRAMP1	Os07g0258400	LOC_Os07g15460	growth	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice	The growth of yeast expressing OsNRAMP1 was impaired in the presence of Cd compared with yeast transformed with an empty vector
OsNRAMP1	Os07g0258400	LOC_Os07g15460	iron	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice	The role of the iron transporter OsNRAMP1 in Cd uptake and transport in rice was investigated here
OsNRAMP1	Os07g0258400	LOC_Os07g15460	iron	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice
OsNRAMP1	Os07g0258400	LOC_Os07g15460	transporter	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice	The role of the iron transporter OsNRAMP1 in Cd uptake and transport in rice was investigated here
OsNRAMP1	Os07g0258400	LOC_Os07g15460	transporter	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice
OsNRAMP1	Os07g0258400	LOC_Os07g15460	root	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice	The expression of OsNRAMP1 in the roots was higher in a high Cd-accumulating cultivar (Habataki) than a low Cd-accumulating cultivar (Sasanishiki) regardless of the presence of Cd, and the amino acid sequence of OsNRAMP1 showed 100% identity between Sasanishiki and Habataki
OsNRAMP1	Os07g0258400	LOC_Os07g15460	root	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice	These results suggest that OsNRAMP1 participates in cellular Cd uptake and Cd transport within plants, and the higher expression of OsNRAMP1 in the roots could lead to an increase in Cd accumulation in the shoots
OsNRAMP1	Os07g0258400	LOC_Os07g15460	shoot	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice	These results suggest that OsNRAMP1 participates in cellular Cd uptake and Cd transport within plants, and the higher expression of OsNRAMP1 in the roots could lead to an increase in Cd accumulation in the shoots
OsNRAMP1	Os07g0258400	LOC_Os07g15460	transporter	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice	Rice has seven putative metal transporter NRAMP genes, but microarray analysis showed that only OsNRAMP1 is highly up-regulated by iron (Fe) deficiency
OsNRAMP1	Os07g0258400	LOC_Os07g15460	transporter	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice
OsNRAMP1	Os07g0258400	LOC_Os07g15460	root	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice	OsNRAMP1 expression was observed mainly in roots and was higher in the roots of a high-Cd-accumulating cultivar (Habataki) than in those of a low-Cd-accumulating cultivar (Sasanishiki)
OsNRAMP1	Os07g0258400	LOC_Os07g15460	root	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice	These results suggest that OsNRAMP1 participates in cellular Cd uptake and that the differences observed in Cd accumulation among cultivars are because of differences in OsNRAMP1 expression levels in roots
OsNRAMP1	Os07g0258400	LOC_Os07g15460	iron	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice	Rice has seven putative metal transporter NRAMP genes, but microarray analysis showed that only OsNRAMP1 is highly up-regulated by iron (Fe) deficiency
OsNRAMP1	Os07g0258400	LOC_Os07g15460	iron	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice
OsNRAMP1	Os07g0258400	LOC_Os07g15460	leaf	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	 Immunostaining showed that OsNRAMP1 was localized in all root cells except the central vasculature, and in leaf mesophyll cells
OsNRAMP1	Os07g0258400	LOC_Os07g15460	root	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	 Immunostaining showed that OsNRAMP1 was localized in all root cells except the central vasculature, and in leaf mesophyll cells
OsNRAMP1	Os07g0258400	LOC_Os07g15460	root	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	 The knockout of OsNRAMP1 resulted in significant decreases in root uptake of Cd and Mn and their accumulation in rice shoots and grains, and increased sensitivity to Mn deficiency
OsNRAMP1	Os07g0258400	LOC_Os07g15460	manganese	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	OsNRAMP1 contributes to cadmium and manganese uptake in rice 
OsNRAMP1	Os07g0258400	LOC_Os07g15460	manganese	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	 Here, we showed that OsNRAMP1 was able to transport Cd and manganese (Mn) when expressed in yeast, but did not transport Fe or As
OsNRAMP1	Os07g0258400	LOC_Os07g15460	cadmium	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	OsNRAMP1 contributes to cadmium and manganese uptake in rice 
OsNRAMP1	Os07g0258400	LOC_Os07g15460	plasma membrane	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	 OsNRAMP1 was mainly expressed in roots and leaves and encoded a plasma membrane-localized protein
OsNRAMP1	Os07g0258400	LOC_Os07g15460	iron	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	 Previous studies reported that the rice OsNRAMP1 (Natural Resistance-Associated Macrophage Protein 1) could transport iron (Fe), Cd and arsenic (As) in heterologous yeast assays
OsNRAMP1	Os07g0258400	LOC_Os07g15460	Fe	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	 Here, we showed that OsNRAMP1 was able to transport Cd and manganese (Mn) when expressed in yeast, but did not transport Fe or As
OsNRAMP1	Os07g0258400	LOC_Os07g15460	Fe	OsNRAMP1 contributes to cadmium and manganese uptake in rice 	 OsNRAMP1 expression was induced by Cd treatment and Fe deficiency
OsNRAMP1	Os07g0258400	LOC_Os07g15460	resistance	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.
OsNRAMP1	Os07g0258400	LOC_Os07g15460	resistance	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 The osnramp1 mutants had increased content of H(2) O(2) and activity of superoxide dismutase, but decreased activity of catalase, exhibiting enhanced broad-spectrum resistance against bacterial and fungal pathogens
OsNRAMP1	Os07g0258400	LOC_Os07g15460	resistance	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Altered expression of metal ion-dependent ROS-scavenging enzymes genes and lower accumulation of cations such as Mn coordinately triggered compromised metal ion-dependent enzyme-catalyzing activity and modulated ROS homeostasis, which together contributed to disease resistance in osnramp1 mutants
OsNRAMP1	Os07g0258400	LOC_Os07g15460	resistance	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Taken together, a proof-of-concept was achieved that broad-spectrum disease resistance and toxic heavy metal-safe rice was engineered by removal of OsNRAMP1 gene
OsNRAMP1	Os07g0258400	LOC_Os07g15460	disease	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.
OsNRAMP1	Os07g0258400	LOC_Os07g15460	disease	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Altered expression of metal ion-dependent ROS-scavenging enzymes genes and lower accumulation of cations such as Mn coordinately triggered compromised metal ion-dependent enzyme-catalyzing activity and modulated ROS homeostasis, which together contributed to disease resistance in osnramp1 mutants
OsNRAMP1	Os07g0258400	LOC_Os07g15460	disease	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Taken together, a proof-of-concept was achieved that broad-spectrum disease resistance and toxic heavy metal-safe rice was engineered by removal of OsNRAMP1 gene
OsNRAMP1	Os07g0258400	LOC_Os07g15460	disease resistance	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.
OsNRAMP1	Os07g0258400	LOC_Os07g15460	disease resistance	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Altered expression of metal ion-dependent ROS-scavenging enzymes genes and lower accumulation of cations such as Mn coordinately triggered compromised metal ion-dependent enzyme-catalyzing activity and modulated ROS homeostasis, which together contributed to disease resistance in osnramp1 mutants
OsNRAMP1	Os07g0258400	LOC_Os07g15460	disease resistance	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Taken together, a proof-of-concept was achieved that broad-spectrum disease resistance and toxic heavy metal-safe rice was engineered by removal of OsNRAMP1 gene
OsNRAMP1	Os07g0258400	LOC_Os07g15460	immunity	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Here, we show that rice heavy metal transporter OsNRAMP1 plays important roles in plant immunity by modulating metal ions and reactive oxygen species (ROS) homeostasis
OsNRAMP1	Os07g0258400	LOC_Os07g15460	homeostasis	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Here, we show that rice heavy metal transporter OsNRAMP1 plays important roles in plant immunity by modulating metal ions and reactive oxygen species (ROS) homeostasis
OsNRAMP1	Os07g0258400	LOC_Os07g15460	transporter	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.
OsNRAMP1	Os07g0258400	LOC_Os07g15460	transporter	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Here, we show that rice heavy metal transporter OsNRAMP1 plays important roles in plant immunity by modulating metal ions and reactive oxygen species (ROS) homeostasis
OsNRAMP1	Os07g0258400	LOC_Os07g15460	metal transport	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.
OsNRAMP1	Os07g0258400	LOC_Os07g15460	metal transport	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Here, we show that rice heavy metal transporter OsNRAMP1 plays important roles in plant immunity by modulating metal ions and reactive oxygen species (ROS) homeostasis
OsNRAMP1	Os07g0258400	LOC_Os07g15460	broad-spectrum disease resistance	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Taken together, a proof-of-concept was achieved that broad-spectrum disease resistance and toxic heavy metal-safe rice was engineered by removal of OsNRAMP1 gene
OsNRAMP1	Os07g0258400	LOC_Os07g15460	reactive oxygen species	The rice heavy metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homeostasis.	 Here, we show that rice heavy metal transporter OsNRAMP1 plays important roles in plant immunity by modulating metal ions and reactive oxygen species (ROS) homeostasis
OsNRAMP3	Os06g0676000	LOC_Os06g46310	leaf	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice	Additionally, compared with wild type, leaf Mn content in osnramp3 plants was mostly in older leaves
OsNRAMP3	Os06g0676000	LOC_Os06g46310	root	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice	Serious necrosis appeared on young leaves and root tips of the OsNRAMP3 knockout line cultivated under low Mn conditions, and high Mn supplies could rescue this phenotype
OsNRAMP3	Os06g0676000	LOC_Os06g46310	vascular bundle	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice	OsNRAMP3 encodes a plasma membrane-localized protein and was specifically expressed in vascular bundles, especially in phloem cells
OsNRAMP3	Os06g0676000	LOC_Os06g46310	vascular bundle	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice	We conclude that OsNRAMP3 is a vascular bundle-localized Mn-influx transporter involved in Mn distribution and contributes to remobilization of Mn from old to young leaves
OsNRAMP3	Os06g0676000	LOC_Os06g46310	vascular bundle	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice
OsNRAMP3	Os06g0676000	LOC_Os06g46310	transporter	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice	Yeast complementation assay showed that OsNRAMP3 is a functional Mn-influx transporter
OsNRAMP3	Os06g0676000	LOC_Os06g46310	transporter	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice	We conclude that OsNRAMP3 is a vascular bundle-localized Mn-influx transporter involved in Mn distribution and contributes to remobilization of Mn from old to young leaves
OsNRAMP3	Os06g0676000	LOC_Os06g46310	transporter	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice
OsNRAMP3	Os06g0676000	LOC_Os06g46310	manganese	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice
OsNRAMP5	Os07g0257200	LOC_Os07g15370	shoot	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport	OsNRAMP5 RNAi (OsNRAMP5i) plants accumulated less Mn in the roots, and less Mn and Fe in shoots, and xylem sap
OsNRAMP5	Os07g0257200	LOC_Os07g15370	shoot	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport	The suppression of OsNRAMP5 promoted Cd translocation to shoots, highlighting the importance of this gene for Cd phytoremediation
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice	Functional analysis revealed that the defective transporter protein encoded by the mutant osnramp5 greatly decreases Cd uptake by roots, resulting in decreased Cd in the straw and grain
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice	Functional analysis revealed that the defective transporter protein encoded by the mutant osnramp5 greatly decreases Cd uptake by roots, resulting in decreased Cd in the straw and grain
OsNRAMP5	Os07g0257200	LOC_Os07g15370	xylem	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport	OsNRAMP5 expression was restricted to roots epidermis, exodermis, and outer layers of the cortex as well as in tissues around the xylem
OsNRAMP5	Os07g0257200	LOC_Os07g15370	xylem	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport	OsNRAMP5 RNAi (OsNRAMP5i) plants accumulated less Mn in the roots, and less Mn and Fe in shoots, and xylem sap
OsNRAMP5	Os07g0257200	LOC_Os07g15370	growth	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport	OsNRAMP5 localized to the plasma membrane, and complemented the growth of yeast strains defective in Mn, Fe, and Cd transport
OsNRAMP5	Os07g0257200	LOC_Os07g15370	growth	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport	These data reveal that OsNRAMP5 contributes to Mn, Cd, and Fe transport in rice and is important for plant growth and development
OsNRAMP5	Os07g0257200	LOC_Os07g15370	grain	Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice	Functional analysis revealed that the defective transporter protein encoded by the mutant osnramp5 greatly decreases Cd uptake by roots, resulting in decreased Cd in the straw and grain
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport	OsNRAMP5 expression was restricted to roots epidermis, exodermis, and outer layers of the cortex as well as in tissues around the xylem
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport	OsNRAMP5 RNAi (OsNRAMP5i) plants accumulated less Mn in the roots, and less Mn and Fe in shoots, and xylem sap
OsNRAMP5	Os07g0257200	LOC_Os07g15370	growth	Knockout of OsNramp5 using the CRISPR/Cas9 system produces low Cd-accumulating indica rice without compromising yield.	 Hydroponic culture showed that Cd concentrations in shoots and roots of osnramp5 mutants were dramatically decreased, resulting in rescue of impaired growth in high Cd condition
OsNRAMP5	Os07g0257200	LOC_Os07g15370	development	Knockout of OsNramp5 using the CRISPR/Cas9 system produces low Cd-accumulating indica rice without compromising yield.	 Here, we report the development of new indica rice lines with low Cd accumulation and no transgenes by knocking out the metal transporter gene OsNramp5 using CRISPR/Cas9 system
OsNRAMP5	Os07g0257200	LOC_Os07g15370	yield	Knockout of OsNramp5 using the CRISPR/Cas9 system produces low Cd-accumulating indica rice without compromising yield.	 In particular, the plant yield was not significantly affected in osnramp5 mutants
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	Knockout of OsNramp5 using the CRISPR/Cas9 system produces low Cd-accumulating indica rice without compromising yield.	 Here, we report the development of new indica rice lines with low Cd accumulation and no transgenes by knocking out the metal transporter gene OsNramp5 using CRISPR/Cas9 system
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).	OsNramp5 is a key gene involved in the control of the uptake of Cd, Mn, and other metal ions by rice root cells
OsNRAMP5	Os07g0257200	LOC_Os07g15370	yield	Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).	 The determination of metal content and the statistics of related agronomic traits revealed that the functionally deficient OsNramp5 not only significantly reduced the accumulation of Cd in the grains of the mutants but also affected rice yield and quality
OsNRAMP5	Os07g0257200	LOC_Os07g15370	yield	Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).	 Additionally, we also found that the increase in the concentration of Mn in the soil restored the phenotype of the declined yield and quality due to the functional deficiency of OsNramp5
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).	Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).
OsNRAMP5	Os07g0257200	LOC_Os07g15370	cadmium	Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).	 In the present study, three Huanghuazhan-based OsNramp5 mutants [LCH1 (Low Cadmium Huanghuazhan 1), LCH2 (Low Cadmium Huanghuazhan 2), and LCH3 (Low Cadmium Huanghuazhan 3)] were obtained using clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9) technology
OsNRAMP5	Os07g0257200	LOC_Os07g15370	quality	Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).	 The determination of metal content and the statistics of related agronomic traits revealed that the functionally deficient OsNramp5 not only significantly reduced the accumulation of Cd in the grains of the mutants but also affected rice yield and quality
OsNRAMP5	Os07g0257200	LOC_Os07g15370	quality	Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).	 However, with the decrease of OsNramp5 mutation degree, its effects on chlorenchyma Mn accumulation, yield, and quality were also diminished
OsNRAMP5	Os07g0257200	LOC_Os07g15370	quality	Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).	 Additionally, we also found that the increase in the concentration of Mn in the soil restored the phenotype of the declined yield and quality due to the functional deficiency of OsNramp5
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	Altered root structure affects both expression and cellular localization of transporters for mineral element uptake in rice.	 The expression level of some transporter genes including OsLsi1 and OsLsi2 for Si uptake and OsNramp5 for Mn uptake was significantly decreased in the mutant compared with the wild-type rice
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	Effects of external Mn2+ activities on OsNRAMP5 expression level and Cd accumulation in indica rice.	 Besides, OsNRAMP5 expression level in roots seemed more related to root Mn accumulation
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	Effects of external Mn2+ activities on OsNRAMP5 expression level and Cd accumulation in indica rice.	 At last, multi-level regulating and processing of the process from gene expression to protein translation might account for the inconsistent relationship between root OsNRAMP5 expression level and Cd accumulation in roots
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	Effects of external Mn2+ activities on OsNRAMP5 expression level and Cd accumulation in indica rice.	Manganese (Mn) transporter OsNRAMP5 was widely reported to regulate cadmium (Cd) uptake in rice
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	Effects of external Mn2+ activities on OsNRAMP5 expression level and Cd accumulation in indica rice.	 The fact that function of OsNRAMP5 mainly focuses on Mn uptake, together with the fact that many transporter genes involved in Cd uptake might result in the insignificant correlation between OsNRAMP5 expression level and Cd accumulation in roots
OsNRAMP5	Os07g0257200	LOC_Os07g15370	manganese	Effects of external Mn2+ activities on OsNRAMP5 expression level and Cd accumulation in indica rice.	Manganese (Mn) transporter OsNRAMP5 was widely reported to regulate cadmium (Cd) uptake in rice
OsNRAMP5	Os07g0257200	LOC_Os07g15370	cadmium	Effects of external Mn2+ activities on OsNRAMP5 expression level and Cd accumulation in indica rice.	Manganese (Mn) transporter OsNRAMP5 was widely reported to regulate cadmium (Cd) uptake in rice
OsNRAMP5	Os07g0257200	LOC_Os07g15370	xylem	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	 Overexpression of OsNRAMP5 decreased Cd translocation from roots to shoots by disrupting radial transport of Cd into the stele for xylem loading, demonstrating the effect of transporter localization and polarity on ion homeostasis
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	 Overexpressed OsNRAMP5 protein was localized to the plasma membrane of all cell types in the root tips and lateral root primordia without polarity
OsNRAMP5	Os07g0257200	LOC_Os07g15370	grain	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain
OsNRAMP5	Os07g0257200	LOC_Os07g15370	grain	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	 When grown in three Cd-contaminated paddy soils, OsNRAMP5 overexpression decreased grain Cd concentration by 49-94% compared with wild type
OsNRAMP5	Os07g0257200	LOC_Os07g15370	homeostasis	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	 Overexpression of OsNRAMP5 decreased Cd translocation from roots to shoots by disrupting radial transport of Cd into the stele for xylem loading, demonstrating the effect of transporter localization and polarity on ion homeostasis
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	 Overexpression of OsNRAMP5 decreased Cd translocation from roots to shoots by disrupting radial transport of Cd into the stele for xylem loading, demonstrating the effect of transporter localization and polarity on ion homeostasis
OsNRAMP5	Os07g0257200	LOC_Os07g15370	cadmium	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain
OsNRAMP5	Os07g0257200	LOC_Os07g15370	cadmium accumulation	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain
OsNRAMP5	Os07g0257200	LOC_Os07g15370	plasma membrane	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	 Overexpressed OsNRAMP5 protein was localized to the plasma membrane of all cell types in the root tips and lateral root primordia without polarity
OsNRAMP5	Os07g0257200	LOC_Os07g15370	lateral root	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain	 Overexpressed OsNRAMP5 protein was localized to the plasma membrane of all cell types in the root tips and lateral root primordia without polarity
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	Knockout of OsNRAMP5 enhances rice tolerance to cadmium toxicity in response to varying external cadmium concentrations via distinct mechanisms.	 The effect of OsNRAMP5 knockout on reducing root Cd uptake weakened, however its effect on improving root-to-shoot Cd translocation was constant with increasing environmental Cd concentrations
OsNRAMP5	Os07g0257200	LOC_Os07g15370	tolerance	Knockout of OsNRAMP5 enhances rice tolerance to cadmium toxicity in response to varying external cadmium concentrations via distinct mechanisms.	Knockout of OsNRAMP5 enhances rice tolerance to cadmium toxicity in response to varying external cadmium concentrations via distinct mechanisms.
OsNRAMP5	Os07g0257200	LOC_Os07g15370	tolerance	Knockout of OsNRAMP5 enhances rice tolerance to cadmium toxicity in response to varying external cadmium concentrations via distinct mechanisms.	 It is vital to evaluate the effects of knocking out OsNRAMP5 on Cd and Mn accumulation, as well as Cd tolerance of rice plants in response to varying environmental Cd concentrations, and to uncover the underlying mechanism, which until now, has remained largely unexplored
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	Knockout of OsNRAMP5 enhances rice tolerance to cadmium toxicity in response to varying external cadmium concentrations via distinct mechanisms.	OsNRAMP5 is a transporter responsible for cadmium (Cd) and manganese (Mn) uptake and root-to-shoot translocation of Mn in rice plants
OsNRAMP5	Os07g0257200	LOC_Os07g15370	manganese	Knockout of OsNRAMP5 enhances rice tolerance to cadmium toxicity in response to varying external cadmium concentrations via distinct mechanisms.	OsNRAMP5 is a transporter responsible for cadmium (Cd) and manganese (Mn) uptake and root-to-shoot translocation of Mn in rice plants
OsNRAMP5	Os07g0257200	LOC_Os07g15370	cadmium	Knockout of OsNRAMP5 enhances rice tolerance to cadmium toxicity in response to varying external cadmium concentrations via distinct mechanisms.	Knockout of OsNRAMP5 enhances rice tolerance to cadmium toxicity in response to varying external cadmium concentrations via distinct mechanisms.
OsNRAMP5	Os07g0257200	LOC_Os07g15370	cadmium	Knockout of OsNRAMP5 enhances rice tolerance to cadmium toxicity in response to varying external cadmium concentrations via distinct mechanisms.	OsNRAMP5 is a transporter responsible for cadmium (Cd) and manganese (Mn) uptake and root-to-shoot translocation of Mn in rice plants
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.	 Among several genes involved in rice Cd accumulation, the loss of function of OsNRAMP5 is known to be effective in reducing grain concentration by inhibiting root uptake
OsNRAMP5	Os07g0257200	LOC_Os07g15370	grain	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.	 Among several genes involved in rice Cd accumulation, the loss of function of OsNRAMP5 is known to be effective in reducing grain concentration by inhibiting root uptake
OsNRAMP5	Os07g0257200	LOC_Os07g15370	grain	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.	 With the aim of improving Mn uptake in OsNRAMP5 mutants while still restricting the grain Cd concentration below the upper limit of international standards, we identified a novel OsNRAMP5 allele encoding a protein in which glutamine (Q) at position 337 was replaced by lysine (K)
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.	 However, disruption of this gene simultaneously decreases manganese (Mn) uptake because OsNRAMP5 is a major Mn transporter
OsNRAMP5	Os07g0257200	LOC_Os07g15370	manganese	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.
OsNRAMP5	Os07g0257200	LOC_Os07g15370	manganese	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.	 However, disruption of this gene simultaneously decreases manganese (Mn) uptake because OsNRAMP5 is a major Mn transporter
OsNRAMP5	Os07g0257200	LOC_Os07g15370	cadmium	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	OsNRAMP5 Is a Major Transporter for Lead Uptake in Rice.	 Knockout of OsNRAMP5 in rice by CRISPR/Cas9 gene editing resulted in significant decreases in root uptake of Pb and accumulation in rice shoots
OsNRAMP5	Os07g0257200	LOC_Os07g15370	grain	OsNRAMP5 Is a Major Transporter for Lead Uptake in Rice.	 When grown in Pb-contaminated paddy soil, OsNRAMP5 knockout mutants accumulated approximately 50 and 70% lower Pb concentrations in the grain and straw, respectively, than the wild type
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	OsNRAMP5 Is a Major Transporter for Lead Uptake in Rice.	OsNRAMP5 Is a Major Transporter for Lead Uptake in Rice.
OsNRAMP5	Os07g0257200	LOC_Os07g15370	transporter	OsNRAMP5 Is a Major Transporter for Lead Uptake in Rice.	 These results indicate that OsNRAMP5 is a major transporter for Pb uptake in rice, in addition to its role in the uptake of manganese and cadmium
OsNRAMP5	Os07g0257200	LOC_Os07g15370	manganese	OsNRAMP5 Is a Major Transporter for Lead Uptake in Rice.	 These results indicate that OsNRAMP5 is a major transporter for Pb uptake in rice, in addition to its role in the uptake of manganese and cadmium
OsNRAMP5	Os07g0257200	LOC_Os07g15370	cadmium	OsNRAMP5 Is a Major Transporter for Lead Uptake in Rice.	 These results indicate that OsNRAMP5 is a major transporter for Pb uptake in rice, in addition to its role in the uptake of manganese and cadmium
OsNRAMP5	Os07g0257200	LOC_Os07g15370	xylem	Duplication of a manganese/cadmium transporter gene reduces cadmium accumulation in rice grain.	 Higher expression of OsNramp5 increased uptake of Cd and Mn into the root cells but decreased Cd release to the xylem
OsNRAMP5	Os07g0257200	LOC_Os07g15370	root	Duplication of a manganese/cadmium transporter gene reduces cadmium accumulation in rice grain.	 Higher expression of OsNramp5 increased uptake of Cd and Mn into the root cells but decreased Cd release to the xylem
OsNramp6	Os01g0503400	LOC_Os01g31870	growth	Two NRAMP6 Isoforms Function as Iron and Manganese Transporters and Contribute to Disease Resistance in Rice.	Furthermore, nramp6 plants showed reduced biomass, pointing to a role of OsNramp6 in plant growth
OsNramp6	Os01g0503400	LOC_Os01g31870	resistance	Two NRAMP6 Isoforms Function as Iron and Manganese Transporters and Contribute to Disease Resistance in Rice.	Also, loss of function of OsNramp6 results in enhanced resistance to M
OsNramp6	Os01g0503400	LOC_Os01g31870	immunity	Two NRAMP6 Isoforms Function as Iron and Manganese Transporters and Contribute to Disease Resistance in Rice.	oryzae, supporting the idea that OsNramp6 negatively regulates rice immunity
OsNramp6	Os01g0503400	LOC_Os01g31870	plant growth	Two NRAMP6 Isoforms Function as Iron and Manganese Transporters and Contribute to Disease Resistance in Rice.	Furthermore, nramp6 plants showed reduced biomass, pointing to a role of OsNramp6 in plant growth
OsNRT1.1A|OsNPF6.3	Os08g0155400	LOC_Os08g05910	flowering	Expression of the Nitrate Transporter Gene OsNRT1.1A/OsNPF6.3 Confers High Yield and Early Maturation in Rice	The improved growth and early-flowering phenotypes and the upregulation of early-flowering genes in OsNRT1.1A-OE plants are consistent with the results from the osnrt1.1a mutant, which collectively demonstrated that OsNRT1.1A plays important roles in promoting both N utilization and flowering.
OsNRT1.1A|OsNPF6.3	Os08g0155400	LOC_Os08g05910	N utilization	Expression of the Nitrate Transporter Gene OsNRT1.1A/OsNPF6.3 Confers High Yield and Early Maturation in Rice	The improved growth and early-flowering phenotypes and the upregulation of early-flowering genes in OsNRT1.1A-OE plants are consistent with the results from the osnrt1.1a mutant, which collectively demonstrated that OsNRT1.1A plays important roles in promoting both N utilization and flowering.
OsNRT1.3|NRT1.1B|OsNPF6.5	Os10g0554200	LOC_Os10g40600	nitrate	Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies	Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies
OsNRT1.3|NRT1.1B|OsNPF6.5	Os10g0554200	LOC_Os10g40600	nitrate transporter	Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies	Here we show that variation in a nitrate-transporter gene, NRT1.1B (OsNPF6.5), may contribute  to this divergence in nitrate use.
OsNRT1.3|NRT1.1B|OsNPF6.5	Os10g0554200	LOC_Os10g40600	nitrogen	NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice.	NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice.
OsNRT1.3|NRT1.1B|OsNPF6.5	Os10g0554200	LOC_Os10g40600	root	NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice.	NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	yield	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	transporter	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	manganese	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	nitrate	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	nitrate transporter	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.	Overexpression of a High-Affinity Nitrate Transporter OsNRT2.1 Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	root	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	root elongation	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	transporter	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	nitrate	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.
OsNRT2.1	Os02g0112100	LOC_Os02g02170	nitrate transporter	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.	Overexpression of Nitrate Transporter OsNRT2.1 Enhances Nitrate-Dependent Root Elongation.
OsNRT2.3	Os01g0704100	LOC_Os01g50820	nitrate	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges
OsNRT2.3	Os01g0704100	LOC_Os01g50820	transporter	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges
OsNRT2.4	Os01g0547600	LOC_Os01g36720	root	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.
OsNRT2.4	Os01g0547600	LOC_Os01g36720	growth	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.
OsNRT2.4	Os01g0547600	LOC_Os01g36720	transporter	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.
OsNRT2.4	Os01g0547600	LOC_Os01g36720	nitrate	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.
OsNRT2.4	Os01g0547600	LOC_Os01g36720	nitrate transporter	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	transporter	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	Map-based cloning revealed that all of the observed mutant phenotypes result from a missense mutation in a putative NST gene, Oryza sativa Nucleotide Sugar Transporter1 (OsNST1)
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	transporter	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	OsNST1 was identified as a Golgi-localized transporter by analysis of a fluorescence-tagged OsNST1 expressed in rice protoplast cells and demonstration of UDP-glucose transport activity via uptake assays in yeast
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	growth	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	The inferior mechanical strength and abnormal development of bc14 plants suggest that OsNST1 has pleiotropic effects on cell wall biosynthesis and plant growth
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	cell wall	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	The inferior mechanical strength and abnormal development of bc14 plants suggest that OsNST1 has pleiotropic effects on cell wall biosynthesis and plant growth
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	cellulose	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	Compositional sugar analyses in total and fractionated wall residues of wild-type and bc14 culms showed a deficiency in the synthesis of glucoconjugated polysaccharides in bc14, indicating that OsNST1 supplies the glucosyl substrate for the formation of matrix polysaccharides, and thereby modulates cellulose biosynthesis
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	cellulose	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	A previously undescribed Golgi NST mutant, brittle culm14 (bc14), displays reduced mechanical strength caused by decreased cellulose content and altered wall structure, and exhibits abnormalities in plant development
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	cellulose	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	Compositional sugar analyses in total and fractionated wall residues of wild-type and bc14 culms showed a deficiency in the synthesis of glucoconjugated polysaccharides in bc14, indicating that OsNST1 supplies the glucosyl substrate for the formation of matrix polysaccharides, and thereby modulates cellulose biosynthesis
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	cell wall	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	The inferior mechanical strength and abnormal development of bc14 plants suggest that OsNST1 has pleiotropic effects on cell wall biosynthesis and plant growth
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	cell wall	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	Identification of OsNST1 has improved our understanding of how cell wall polysaccharide synthesis is regulated by Golgi NSTs in plants
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	culm	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	Compositional sugar analyses in total and fractionated wall residues of wild-type and bc14 culms showed a deficiency in the synthesis of glucoconjugated polysaccharides in bc14, indicating that OsNST1 supplies the glucosyl substrate for the formation of matrix polysaccharides, and thereby modulates cellulose biosynthesis
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	cell wall	Golgi-localized UDP-glucose transporter is required for cell wall integrity in rice	We previously examined cell wall composition of bc14 and wild type plants
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	culm	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	A previously undescribed Golgi NST mutant, brittle culm14 (bc14), displays reduced mechanical strength caused by decreased cellulose content and altered wall structure, and exhibits abnormalities in plant development
OsNST1|BC14	Os02g0614100	LOC_Os02g40030	culm	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice	Compositional sugar analyses in total and fractionated wall residues of wild-type and bc14 culms showed a deficiency in the synthesis of glucoconjugated polysaccharides in bc14, indicating that OsNST1 supplies the glucosyl substrate for the formation of matrix polysaccharides, and thereby modulates cellulose biosynthesis
OsNSUN2	Os09g0471900	LOC_Os09g29630	temperature	OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature.	Furthermore, the photosystem of osnsun2 mutant was vulnerable to high ambient temperature and failed to undergo repair under tolerable heat stress
OsNSUN2	Os09g0471900	LOC_Os09g29630	photosynthesis	OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature.	Thus, OsNSUN2 mutation reduced photosynthesis efficiency and accumulated excessive reactive oxygen species upon heat treatment
OsNSUN2	Os09g0471900	LOC_Os09g29630	stress	OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature.	Furthermore, the photosystem of osnsun2 mutant was vulnerable to high ambient temperature and failed to undergo repair under tolerable heat stress
OsNSUN2	Os09g0471900	LOC_Os09g29630	methyltransferase	OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature.	Herein, we identified OsNSUN2 as an RNA 5-methylcytosine (m5C) methyltransferase in rice
OsNSUN2	Os09g0471900	LOC_Os09g29630	reactive oxygen species	OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature.	Thus, OsNSUN2 mutation reduced photosynthesis efficiency and accumulated excessive reactive oxygen species upon heat treatment
OsNSUN2	Os09g0471900	LOC_Os09g29630	heat stress	OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature.	Furthermore, the photosystem of osnsun2 mutant was vulnerable to high ambient temperature and failed to undergo repair under tolerable heat stress
OsNSUN2	Os09g0471900	LOC_Os09g29630	Heat Stress	OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature.	Furthermore, the photosystem of osnsun2 mutant was vulnerable to high ambient temperature and failed to undergo repair under tolerable heat stress
OsNSUN2	Os09g0471900	LOC_Os09g29630	photosystem	OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature.	Furthermore, the photosystem of osnsun2 mutant was vulnerable to high ambient temperature and failed to undergo repair under tolerable heat stress
OsNTL3	Os01g0261200	LOC_Os01g15640	transcription factor	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.
OsNTL3	Os01g0261200	LOC_Os01g15640	transcription factor	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	OsNTL3 encodes a NAC transcription factor with a predicted C-terminal transmembrane domain
OsNTL3	Os01g0261200	LOC_Os01g15640	seedlings	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Loss-of-function mutation of OsNTL3 confers heat sensitivity while inducible expression of the truncated form of OsNTL3 without the transmembrane domain increases heat tolerance in rice seedlings
OsNTL3	Os01g0261200	LOC_Os01g15640	tolerance	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	In the current study, we discovered that OsNTL3 is required for heat stress tolerance in rice
OsNTL3	Os01g0261200	LOC_Os01g15640	tolerance	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Loss-of-function mutation of OsNTL3 confers heat sensitivity while inducible expression of the truncated form of OsNTL3 without the transmembrane domain increases heat tolerance in rice seedlings
OsNTL3	Os01g0261200	LOC_Os01g15640	stress	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	In the current study, we discovered that OsNTL3 is required for heat stress tolerance in rice
OsNTL3	Os01g0261200	LOC_Os01g15640	stress	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Interestingly, OsNTL3 directly binds to OsbZIP74 promoter and regulates its expression in response to heat stress
OsNTL3	Os01g0261200	LOC_Os01g15640	stress	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	In turn, up-regulation of OsNTL3 by heat stress is dependent on OsbZIP74
OsNTL3	Os01g0261200	LOC_Os01g15640	stress	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Thus, our work reveals the important role of OsNTL3 in thermotolerance, and a regulatory circuit mediated by OsbZIP74 and OsNTL3 in communications among ER, plasma membrane and nucleus under heat stress conditions
OsNTL3	Os01g0261200	LOC_Os01g15640	nucleus	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Thus, our work reveals the important role of OsNTL3 in thermotolerance, and a regulatory circuit mediated by OsbZIP74 and OsNTL3 in communications among ER, plasma membrane and nucleus under heat stress conditions
OsNTL3	Os01g0261200	LOC_Os01g15640	R protein	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	RNA-Seq analysis revealed that OsNTL3 regulates the expression of genes involved in ER protein folding and other processes
OsNTL3	Os01g0261200	LOC_Os01g15640	plasma membrane	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Thus, our work reveals the important role of OsNTL3 in thermotolerance, and a regulatory circuit mediated by OsbZIP74 and OsNTL3 in communications among ER, plasma membrane and nucleus under heat stress conditions
OsNTL3	Os01g0261200	LOC_Os01g15640	stress tolerance	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	In the current study, we discovered that OsNTL3 is required for heat stress tolerance in rice
OsNTL3	Os01g0261200	LOC_Os01g15640	heat tolerance	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Loss-of-function mutation of OsNTL3 confers heat sensitivity while inducible expression of the truncated form of OsNTL3 without the transmembrane domain increases heat tolerance in rice seedlings
OsNTL3	Os01g0261200	LOC_Os01g15640	Heat Stress	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	In the current study, we discovered that OsNTL3 is required for heat stress tolerance in rice
OsNTL3	Os01g0261200	LOC_Os01g15640	Heat Stress	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Interestingly, OsNTL3 directly binds to OsbZIP74 promoter and regulates its expression in response to heat stress
OsNTL3	Os01g0261200	LOC_Os01g15640	Heat Stress	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	In turn, up-regulation of OsNTL3 by heat stress is dependent on OsbZIP74
OsNTL3	Os01g0261200	LOC_Os01g15640	Heat Stress	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Thus, our work reveals the important role of OsNTL3 in thermotolerance, and a regulatory circuit mediated by OsbZIP74 and OsNTL3 in communications among ER, plasma membrane and nucleus under heat stress conditions
OsNTL5	Os08g0562200	LOC_Os08g44820	transcription factor	A Membrane-Bound NAC-Like Transcription Factor OsNTL5 Represses the Flowering in Oryza sativa.	A Membrane-Bound NAC-Like Transcription Factor OsNTL5 Represses the Flowering in Oryza sativa.
OsNTL5	Os08g0562200	LOC_Os08g44820	nucleus	A Membrane-Bound NAC-Like Transcription Factor OsNTL5 Represses the Flowering in Oryza sativa.	The protein subcellular localization assay suggested that N-terminal part of the OsNTL5 is localized to the nucleus after the protein is cleaved from its membrane-spanning domain at the C-terminal end and functions as a TF
OsNUC1	Os04g0620700	LOC_Os04g52960	salt	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	) nucleolin gene, OsNUC1, transcripts were expressed in rice leaves, flowers, seeds and roots but differentially expressed within and between two pairs of salt-sensitive and salt-resistant rice lines when subjected to salt stress
OsNUC1	Os04g0620700	LOC_Os04g52960	salt	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	Salt-resistant lines exhibited higher OsNUC1 transcript expression levels than salt-sensitive lines during 0
OsNUC1	Os04g0620700	LOC_Os04g52960	salt	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	Without salt stress, OsNUC1-L expressing Arabidopsis thaliana Atnuc1-L1 plants displayed a substantial but incomplete revertant phenotype, whereas OsNUC1-S expression only induced a weak effect
OsNUC1	Os04g0620700	LOC_Os04g52960	salt	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	We propose that OsNUC1-S plays an important role in salt resistance during salt stress, a new role for nucleolin in plants
OsNUC1	Os04g0620700	LOC_Os04g52960	salt	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress
OsNUC1	Os04g0620700	LOC_Os04g52960	root	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	) nucleolin gene, OsNUC1, transcripts were expressed in rice leaves, flowers, seeds and roots but differentially expressed within and between two pairs of salt-sensitive and salt-resistant rice lines when subjected to salt stress
OsNUC1	Os04g0620700	LOC_Os04g52960	flower	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	) nucleolin gene, OsNUC1, transcripts were expressed in rice leaves, flowers, seeds and roots but differentially expressed within and between two pairs of salt-sensitive and salt-resistant rice lines when subjected to salt stress
OsNUC1	Os04g0620700	LOC_Os04g52960	seed	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	) nucleolin gene, OsNUC1, transcripts were expressed in rice leaves, flowers, seeds and roots but differentially expressed within and between two pairs of salt-sensitive and salt-resistant rice lines when subjected to salt stress
OsNUC1	Os04g0620700	LOC_Os04g52960	salt stress	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	) nucleolin gene, OsNUC1, transcripts were expressed in rice leaves, flowers, seeds and roots but differentially expressed within and between two pairs of salt-sensitive and salt-resistant rice lines when subjected to salt stress
OsNUC1	Os04g0620700	LOC_Os04g52960	salt stress	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	Without salt stress, OsNUC1-L expressing Arabidopsis thaliana Atnuc1-L1 plants displayed a substantial but incomplete revertant phenotype, whereas OsNUC1-S expression only induced a weak effect
OsNUC1	Os04g0620700	LOC_Os04g52960	salt stress	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	We propose that OsNUC1-S plays an important role in salt resistance during salt stress, a new role for nucleolin in plants
OsNUC1	Os04g0620700	LOC_Os04g52960	salt stress	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress
OsNUC1	Os04g0620700	LOC_Os04g52960	resistant	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	) nucleolin gene, OsNUC1, transcripts were expressed in rice leaves, flowers, seeds and roots but differentially expressed within and between two pairs of salt-sensitive and salt-resistant rice lines when subjected to salt stress
OsNUC1	Os04g0620700	LOC_Os04g52960	resistant	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress	Salt-resistant lines exhibited higher OsNUC1 transcript expression levels than salt-sensitive lines during 0
OsNUC1	Os04g0620700	LOC_Os04g52960	growth	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
OsNUC1	Os04g0620700	LOC_Os04g52960	shoot	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
OsNUC1	Os04g0620700	LOC_Os04g52960	salt	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
OsNUC1	Os04g0620700	LOC_Os04g52960	salt stress	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
OsNUC1	Os04g0620700	LOC_Os04g52960	stress	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
OsNUDX14	Os06g0129700	LOC_Os06g03910	development	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 This study revealed that OsNUDX14 is associated with plant development and grain chalkiness, providing a potential opportunity to optimize plant architecture and quality for crop breeding
OsNUDX14	Os06g0129700	LOC_Os06g03910	grain	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 In addition, OsNUDX14 affected grain chalkiness in rice
OsNUDX14	Os06g0129700	LOC_Os06g03910	grain	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 This study revealed that OsNUDX14 is associated with plant development and grain chalkiness, providing a potential opportunity to optimize plant architecture and quality for crop breeding
OsNUDX14	Os06g0129700	LOC_Os06g03910	plant development	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 This study revealed that OsNUDX14 is associated with plant development and grain chalkiness, providing a potential opportunity to optimize plant architecture and quality for crop breeding
OsNUDX14	Os06g0129700	LOC_Os06g03910	mature leaves	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 Results showed that OsNUDX14 is constitutively expressed in various tissues and most strongly expressed in mature leaves
OsNUDX14	Os06g0129700	LOC_Os06g03910	mitochondria	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 In the present study, we identified and characterized OsNUDX14 localized in the mitochondria in rice
OsNUDX14	Os06g0129700	LOC_Os06g03910	quality	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 This study revealed that OsNUDX14 is associated with plant development and grain chalkiness, providing a potential opportunity to optimize plant architecture and quality for crop breeding
OsNUDX14	Os06g0129700	LOC_Os06g03910	architecture	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 This study revealed that OsNUDX14 is associated with plant development and grain chalkiness, providing a potential opportunity to optimize plant architecture and quality for crop breeding
OsNUDX14	Os06g0129700	LOC_Os06g03910	breeding	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 This study revealed that OsNUDX14 is associated with plant development and grain chalkiness, providing a potential opportunity to optimize plant architecture and quality for crop breeding
OsNUDX14	Os06g0129700	LOC_Os06g03910	chalkiness	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 In addition, OsNUDX14 affected grain chalkiness in rice
OsNUDX14	Os06g0129700	LOC_Os06g03910	lignin	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 Furthermore, transcript profile analysis indicated that OsNUDX14 is associated with lignin biosynthesis in rice
OsNUDX14	Os06g0129700	LOC_Os06g03910	plant architecture	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 This study revealed that OsNUDX14 is associated with plant development and grain chalkiness, providing a potential opportunity to optimize plant architecture and quality for crop breeding
OsNUDX14	Os06g0129700	LOC_Os06g03910	lignin biosynthesis	Nudix hydrolase 14 influences plant development and grain chalkiness in rice.	 Furthermore, transcript profile analysis indicated that OsNUDX14 is associated with lignin biosynthesis in rice
OsNUDX2	Os02g0793300	LOC_Os02g55030	stress	Rice Nudix Hydrolase OsNUDX2 Sanitizes Oxidized Nucleotides.	 These results suggest that the different substrate specificity and identity among plant 8-oxo-dGTP-hydrolyzing NUDXs and OsNUDX2 reduces UV stress by sanitizing the oxidized nucleotides
OsNUS1|V1	Os03g0656900	LOC_Os03g45400	leaf	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice	We report here the effects of v1 mutation on the expressions of plastid and nuclear genes during leaf development
OsNUS1|V1	Os03g0656900	LOC_Os03g45400	leaf	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice	This period coincides very closely with the leaf developmental stage (late P4) at which the V1 gene gives the signal that determines the virescent phenotype
OsNUS1|V1	Os03g0656900	LOC_Os03g45400	leaf	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice
OsNUS1|V1	Os03g0656900	LOC_Os03g45400	seedling	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice	On the contrary, in the v1 seedlings grown at a restrictive temperature (20°C), this stage-specific accumulation of the rpo and rps transcripts was missing
OsNUS1|V1	Os03g0656900	LOC_Os03g45400	temperature	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice	The rice nuclear mutant, virescent-1 (v1), is temperature-conditional and develops chlorotic leaves when grown at restrictive temperatures
OsNUS1|V1	Os03g0656900	LOC_Os03g45400	temperature	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice	On the contrary, in the v1 seedlings grown at a restrictive temperature (20°C), this stage-specific accumulation of the rpo and rps transcripts was missing
OsNUS1|V1	Os03g0656900	LOC_Os03g45400	leaf development	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice	We report here the effects of v1 mutation on the expressions of plastid and nuclear genes during leaf development
OsNUS1|V1	Os03g0656900	LOC_Os03g45400	leaf development	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice	This period coincides very closely with the leaf developmental stage (late P4) at which the V1 gene gives the signal that determines the virescent phenotype
OsNUS1|V1	Os03g0656900	LOC_Os03g45400	leaf development	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice	A virescent gene V1 determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice
OsO3L2	Os06g0559400	LOC_Os06g36390	seedlings	Engineering low-cadmium rice through stress-inducible expression of OXS3-family member genes.	However, despite generating 625 putative transformants, only 7 lines survived as T1 seedlings and only 1 line of each overexpressed OsO3L2 or OsO3L3-produced T2 progeny
OsO3L2	Os06g0559400	LOC_Os06g36390	root	Engineering low-cadmium rice through stress-inducible expression of OXS3-family member genes.	Analysis of the expression profile suggested that low Cd accumulation may be due to high expression of OsO3L2 and OsO3L3 in the root tip region
OsO3L2	Os06g0559400	LOC_Os06g36390	root	Engineering low-cadmium rice through stress-inducible expression of OXS3-family member genes.	Cellular localization of OsO3L2 and OsO3L3 indicate that they are histone H2A interacting nuclear proteins in vascular cells and especially in the root tip region
OsO3L2	Os06g0559400	LOC_Os06g36390	R protein	Engineering low-cadmium rice through stress-inducible expression of OXS3-family member genes.	Cellular localization of OsO3L2 and OsO3L3 indicate that they are histone H2A interacting nuclear proteins in vascular cells and especially in the root tip region
OsO3L3	Os02g0227100	LOC_Os02g13370	root	Engineering low-cadmium rice through stress-inducible expression of OXS3-family member genes.	Analysis of the expression profile suggested that low Cd accumulation may be due to high expression of OsO3L2 and OsO3L3 in the root tip region
OsO3L3	Os02g0227100	LOC_Os02g13370	root	Engineering low-cadmium rice through stress-inducible expression of OXS3-family member genes.	Cellular localization of OsO3L2 and OsO3L3 indicate that they are histone H2A interacting nuclear proteins in vascular cells and especially in the root tip region
OsO3L3	Os02g0227100	LOC_Os02g13370	R protein	Engineering low-cadmium rice through stress-inducible expression of OXS3-family member genes.	Cellular localization of OsO3L2 and OsO3L3 indicate that they are histone H2A interacting nuclear proteins in vascular cells and especially in the root tip region
OsOASTL-A1	Os03g0747800	LOC_Os03g53650	root	OsOASTL-A1 functions as a cytosolic cysteine synthase and affects arsenic tolerance in rice.	Transgenic rice plants expressing pOsOASTL-A1::GUS suggested that OsOASTL-A1 was strongly expressed in the outer cortex and the vascular cylinder in the root mature zone
OsOASTL-A1	Os03g0747800	LOC_Os03g53650	growth	OsOASTL-A1 functions as a cytosolic cysteine synthase and affects arsenic tolerance in rice.	Tissue expression analysis revealed that OsOASTL-A1 mainly expressed in roots at the vegetative growth stage and in nodes at the reproductive stage
OsOASTL-A1	Os03g0747800	LOC_Os03g53650	tolerance	OsOASTL-A1 functions as a cytosolic cysteine synthase and affects arsenic tolerance in rice.	OsOASTL-A1 functions as a cytosolic cysteine synthase and affects arsenic tolerance in rice.
OsOASTL-A1	Os03g0747800	LOC_Os03g53650	vegetative	OsOASTL-A1 functions as a cytosolic cysteine synthase and affects arsenic tolerance in rice.	Tissue expression analysis revealed that OsOASTL-A1 mainly expressed in roots at the vegetative growth stage and in nodes at the reproductive stage
OsOASTL-A1	Os03g0747800	LOC_Os03g53650	stress	OsOASTL-A1 functions as a cytosolic cysteine synthase and affects arsenic tolerance in rice.	Knockout of OsOASTL-A1 led to significantly lower levels of cysteine, glutathione and phytochelatins in roots and increased sensitivity to arsenate stress
OsOASTL-A1	Os03g0747800	LOC_Os03g53650	reproductive	OsOASTL-A1 functions as a cytosolic cysteine synthase and affects arsenic tolerance in rice.	Tissue expression analysis revealed that OsOASTL-A1 mainly expressed in roots at the vegetative growth stage and in nodes at the reproductive stage
OsOAT	Os03g0643300	LOC_Os03g44150	oxidative	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice	In addition, OsOAT-overexpressing plants showed significantly increased tolerance to oxidative stress
OsOAT	Os03g0643300	LOC_Os03g44150	oxidative	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice
OsOAT	Os03g0643300	LOC_Os03g44150	transcription factor	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice	We confirmed that OsOAT is a direct target of the stress-responsive NAC transcription factor SNAC2
OsOAT	Os03g0643300	LOC_Os03g44150	growth	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice	Overexpression of OsOAT caused significantly increased delta-OAT activity and Pro accumulation under normal growth conditions
OsOAT	Os03g0643300	LOC_Os03g44150	drought	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice	Both ABA-dependent and ABA-independent pathways contributed to the drought-induced expression of OsOAT
OsOAT	Os03g0643300	LOC_Os03g44150	drought	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice	Overexpression of the OsOAT gene in rice resulted in significantly enhanced drought and osmotic stress tolerance
OsOAT	Os03g0643300	LOC_Os03g44150	drought	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice
OsOAT	Os03g0643300	LOC_Os03g44150	phytohormone	An ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice	OsOAT is responsive to multiple stresses and phytohormone treatments
OsOAT	Os03g0643300	LOC_Os03g44150	nitrogen	Ornithine ��-aminotransferase is critical for floret development and seed setting through mediating nitrogen reutilization in rice.	 In the Osoat mutant, metabolic abnormality induced by nitrogen deficiency in floret causes malformed glumes, incapable glume opening and anther indehiscence
OsOAT	Os03g0643300	LOC_Os03g44150	nitrogen	Ornithine ��-aminotransferase is critical for floret development and seed setting through mediating nitrogen reutilization in rice.	 Therefore, OsOAT is crucial for nitrogen reutilization and plays a critical role in floret development and seed setting in rice
OsOAT	Os03g0643300	LOC_Os03g44150	anther	Ornithine ��-aminotransferase is critical for floret development and seed setting through mediating nitrogen reutilization in rice.	 In the Osoat mutant, metabolic abnormality induced by nitrogen deficiency in floret causes malformed glumes, incapable glume opening and anther indehiscence
OsOAT	Os03g0643300	LOC_Os03g44150	development	Ornithine ��-aminotransferase is critical for floret development and seed setting through mediating nitrogen reutilization in rice.	 Therefore, OsOAT is crucial for nitrogen reutilization and plays a critical role in floret development and seed setting in rice
OsOAT	Os03g0643300	LOC_Os03g44150	seed	Ornithine ��-aminotransferase is critical for floret development and seed setting through mediating nitrogen reutilization in rice.	 Therefore, OsOAT is crucial for nitrogen reutilization and plays a critical role in floret development and seed setting in rice
OsOAT	Os03g0643300	LOC_Os03g44150	seedlings	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 osoat mutant was identified as a temperature-sensitive male sterile mutant with deformed floral organs and seedlings sensitive to cold stress
OsOAT	Os03g0643300	LOC_Os03g44150	plant development	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.
OsOAT	Os03g0643300	LOC_Os03g44150	fertility	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.
OsOAT	Os03g0643300	LOC_Os03g44150	stress	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 osoat mutant was identified as a temperature-sensitive male sterile mutant with deformed floral organs and seedlings sensitive to cold stress
OsOAT	Os03g0643300	LOC_Os03g44150	stress	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 Moreover, indica varieties carrying WYG-type OsOAT generally have higher seed-setting rates than those carrying HHZ-type OsOAT under cold stress at reproductive stage, highlighting the favorable selection for WYG-type OsOAT during domestication and breeding to cope with low temperatures
OsOAT	Os03g0643300	LOC_Os03g44150	domestication	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 Moreover, indica varieties carrying WYG-type OsOAT generally have higher seed-setting rates than those carrying HHZ-type OsOAT under cold stress at reproductive stage, highlighting the favorable selection for WYG-type OsOAT during domestication and breeding to cope with low temperatures
OsOAT	Os03g0643300	LOC_Os03g44150	tolerance	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.
OsOAT	Os03g0643300	LOC_Os03g44150	cold tolerance	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.
OsOAT	Os03g0643300	LOC_Os03g44150	cold stress	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 osoat mutant was identified as a temperature-sensitive male sterile mutant with deformed floral organs and seedlings sensitive to cold stress
OsOAT	Os03g0643300	LOC_Os03g44150	cold stress	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 Moreover, indica varieties carrying WYG-type OsOAT generally have higher seed-setting rates than those carrying HHZ-type OsOAT under cold stress at reproductive stage, highlighting the favorable selection for WYG-type OsOAT during domestication and breeding to cope with low temperatures
OsOAT	Os03g0643300	LOC_Os03g44150	cold	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.
OsOAT	Os03g0643300	LOC_Os03g44150	cold	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 osoat mutant was identified as a temperature-sensitive male sterile mutant with deformed floral organs and seedlings sensitive to cold stress
OsOAT	Os03g0643300	LOC_Os03g44150	cold	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 Comparative transcriptome analysis showed that OsOAT mutation and cold treatment of the wild-type plant led to similar changes in the global gene expression profiles in anthers
OsOAT	Os03g0643300	LOC_Os03g44150	cold	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 OsOAT genes in indica rice Huanghuazhan (HHZ) and japonica rice Wuyungeng (WYG) are different in gene structure and response to cold
OsOAT	Os03g0643300	LOC_Os03g44150	cold	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 Moreover, indica varieties carrying WYG-type OsOAT generally have higher seed-setting rates than those carrying HHZ-type OsOAT under cold stress at reproductive stage, highlighting the favorable selection for WYG-type OsOAT during domestication and breeding to cope with low temperatures
OsOAT	Os03g0643300	LOC_Os03g44150	floral	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 osoat mutant was identified as a temperature-sensitive male sterile mutant with deformed floral organs and seedlings sensitive to cold stress
OsOAT	Os03g0643300	LOC_Os03g44150	reproductive	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 Moreover, indica varieties carrying WYG-type OsOAT generally have higher seed-setting rates than those carrying HHZ-type OsOAT under cold stress at reproductive stage, highlighting the favorable selection for WYG-type OsOAT during domestication and breeding to cope with low temperatures
OsOAT	Os03g0643300	LOC_Os03g44150	breeding	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 Moreover, indica varieties carrying WYG-type OsOAT generally have higher seed-setting rates than those carrying HHZ-type OsOAT under cold stress at reproductive stage, highlighting the favorable selection for WYG-type OsOAT during domestication and breeding to cope with low temperatures
OsOAT	Os03g0643300	LOC_Os03g44150	sterile	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 osoat mutant was identified as a temperature-sensitive male sterile mutant with deformed floral organs and seedlings sensitive to cold stress
OsOAT	Os03g0643300	LOC_Os03g44150	floral organ	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 osoat mutant was identified as a temperature-sensitive male sterile mutant with deformed floral organs and seedlings sensitive to cold stress
OsOAT	Os03g0643300	LOC_Os03g44150	male fertility	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.
OsOAT	Os03g0643300	LOC_Os03g44150	seed-setting	Ornithine δ-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	 Moreover, indica varieties carrying WYG-type OsOAT generally have higher seed-setting rates than those carrying HHZ-type OsOAT under cold stress at reproductive stage, highlighting the favorable selection for WYG-type OsOAT during domestication and breeding to cope with low temperatures
OsOBF1|OsbZIP87	Os12g0560900	LOC_Os12g37410	temperature	LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants	Whereas the expression patterns of lip19 and OsOBF1 in response to low temperatures were totally opposite, the locations of their expression were almost identical
OsObgC1	Os07g0669200	LOC_Os07g47300	chloroplast	Oryza sativa ObgC1 Acts as a Key Regulator of DNA Replication and Ribosome Biogenesis in Chloroplast Nucleoids	Conclusion: Our findings here indicate that the OsObgC1 retains the evolutionarily biological conserved roles of prokaryotic Obg, which acts as a signaling hub that regulates DNA replication and ribosome biogenesis in chloroplast nucleoids
OsOFP14	Os04g0415100	LOC_Os04g33870	transcription suppressor	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	Since OsOFP14 is a member of a transcription suppressor family, we speculated that OsOFP14 antagonistically or synergistically modulates GS9 activity.
OsOFP14	Os04g0415100	LOC_Os04g33870	grain shape	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.
OsOFP14	Os04g0415100	LOC_Os04g33870	grain size	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.
OsOFP19	Os05g0324600	LOC_Os05g25910	grain	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	Here, we report that OsOFP19 negatively modulates brassinosteroid (BR) response and integrates it with cell division pattern to affect plant architecture, including grain shape, through interaction with both DLT (DWARF AND LOW-TILLERING) and OSH1 (Oryza sativa homeobox1)
OsOFP19	Os05g0324600	LOC_Os05g25910	cell division	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.
OsOFP19	Os05g0324600	LOC_Os05g25910	cell division	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	Here, we report that OsOFP19 negatively modulates brassinosteroid (BR) response and integrates it with cell division pattern to affect plant architecture, including grain shape, through interaction with both DLT (DWARF AND LOW-TILLERING) and OSH1 (Oryza sativa homeobox1)
OsOFP19	Os05g0324600	LOC_Os05g25910	cell division	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	Further studies revealed that OsOFP19 interacts with OSH1, and this interaction enhances the transcriptional activity of each other and leads to a transition from anticlinal to periclinal cell division
OsOFP19	Os05g0324600	LOC_Os05g25910	architecture	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.
OsOFP19	Os05g0324600	LOC_Os05g25910	brassinosteroid	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.
OsOFP19	Os05g0324600	LOC_Os05g25910	brassinosteroid	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	Here, we report that OsOFP19 negatively modulates brassinosteroid (BR) response and integrates it with cell division pattern to affect plant architecture, including grain shape, through interaction with both DLT (DWARF AND LOW-TILLERING) and OSH1 (Oryza sativa homeobox1)
OsOFP19	Os05g0324600	LOC_Os05g25910	Brassinosteroid	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.
OsOFP19	Os05g0324600	LOC_Os05g25910	Brassinosteroid	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	Here, we report that OsOFP19 negatively modulates brassinosteroid (BR) response and integrates it with cell division pattern to affect plant architecture, including grain shape, through interaction with both DLT (DWARF AND LOW-TILLERING) and OSH1 (Oryza sativa homeobox1)
OsOFP19	Os05g0324600	LOC_Os05g25910	Brassinosteroid Signaling	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.
OsOFP19	Os05g0324600	LOC_Os05g25910	plant architecture	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.
OsOFP19	Os05g0324600	LOC_Os05g25910	plant architecture	OsOFP19 modulates plant architecture by integrating cell division pattern and brassinosteroid signaling.	Here, we report that OsOFP19 negatively modulates brassinosteroid (BR) response and integrates it with cell division pattern to affect plant architecture, including grain shape, through interaction with both DLT (DWARF AND LOW-TILLERING) and OSH1 (Oryza sativa homeobox1)
OsOFP19	Os05g0324600	LOC_Os05g25910	brassinosteroid	Overexpression of SlOFP20 affects floral organ and pollen development.	SlOFP20 overexpression altered the expression levels of some brassinosteroid (BR)-associated genes, implying that SlOFP20 may play a negative role in the BR response, similar to its ortholog OsOFP19 in rice
OsOFP19	Os05g0324600	LOC_Os05g25910	BR	Overexpression of SlOFP20 affects floral organ and pollen development.	SlOFP20 overexpression altered the expression levels of some brassinosteroid (BR)-associated genes, implying that SlOFP20 may play a negative role in the BR response, similar to its ortholog OsOFP19 in rice
OsOFP19	Os05g0324600	LOC_Os05g25910	Brassinosteroid	Overexpression of SlOFP20 affects floral organ and pollen development.	SlOFP20 overexpression altered the expression levels of some brassinosteroid (BR)-associated genes, implying that SlOFP20 may play a negative role in the BR response, similar to its ortholog OsOFP19 in rice
OsOFP2	Os01g0625900	LOC_Os01g43610	leaf	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Rice plants overexpressing OsOFP2 were reduced in height and exhibited altered leaf morphology, seed shape, and positioning of vascular bundles in stems
OsOFP2	Os01g0625900	LOC_Os01g43610	vascular bundle	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Rice plants overexpressing OsOFP2 were reduced in height and exhibited altered leaf morphology, seed shape, and positioning of vascular bundles in stems
OsOFP2	Os01g0625900	LOC_Os01g43610	seed	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Rice plants overexpressing OsOFP2 were reduced in height and exhibited altered leaf morphology, seed shape, and positioning of vascular bundles in stems
OsOFP2	Os01g0625900	LOC_Os01g43610	development	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Also, we found that OsOFP2 was expressed in plant vasculature and determined that putative vascular development KNOX and BELL proteins interact with OsOFP2
OsOFP2	Os01g0625900	LOC_Os01g43610	development	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	We propose that OsOFP2 could modulate KNOX-BELL function to control diverse aspects of development including vasculature development
OsOFP2	Os01g0625900	LOC_Os01g43610	gibberellin	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Reduced expression of the gibberellin biosynthesis gene GA 20-oxidase 7 coincided with lower gibberellin content in OsOFP2 overexpression lines
OsOFP2	Os01g0625900	LOC_Os01g43610	ga	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Reduced expression of the gibberellin biosynthesis gene GA 20-oxidase 7 coincided with lower gibberellin content in OsOFP2 overexpression lines
OsOFP2	Os01g0625900	LOC_Os01g43610	height	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Rice plants overexpressing OsOFP2 were reduced in height and exhibited altered leaf morphology, seed shape, and positioning of vascular bundles in stems
OsOFP2	Os01g0625900	LOC_Os01g43610	nucleus	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	OsOFP2 was found to localize to the nucleus and to the cytosol
OsOFP2	Os01g0625900	LOC_Os01g43610	Gibberellin	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Reduced expression of the gibberellin biosynthesis gene GA 20-oxidase 7 coincided with lower gibberellin content in OsOFP2 overexpression lines
OsOFP2	Os01g0625900	LOC_Os01g43610	GA	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Reduced expression of the gibberellin biosynthesis gene GA 20-oxidase 7 coincided with lower gibberellin content in OsOFP2 overexpression lines
OsOFP2	Os01g0625900	LOC_Os01g43610	vascular development	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Also, we found that OsOFP2 was expressed in plant vasculature and determined that putative vascular development KNOX and BELL proteins interact with OsOFP2
OsOFP2	Os01g0625900	LOC_Os01g43610	gibberellin biosynthesis	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Reduced expression of the gibberellin biosynthesis gene GA 20-oxidase 7 coincided with lower gibberellin content in OsOFP2 overexpression lines
OsOFP3	Os01g0732300	LOC_Os01g53160	salt tolerance	Rice miR168a-5p regulates seed length, nitrogen allocation and salt tolerance by targeting OsOFP3, OsNPF2.4 and OsAGO1a, respectively	Rice miR168a-5p regulates seed length, nitrogen allocation and salt tolerance by targeting OsOFP3, OsNPF2.4 and OsAGO1a, respectively
OsOFP6	Os01g0823500	LOC_Os01g60810	root	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	OsOFP6 was shown to interfere with auxin in regulating lateral root growth and initiation, as RNAi plants had increased density of lateral roots under IAA (indole-3-acetic acid) treatment
OsOFP6	Os01g0823500	LOC_Os01g60810	growth	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	Here, we report that rice OsOFP6 regulates growth and development, and alters responses to drought and cold stresses
OsOFP6	Os01g0823500	LOC_Os01g60810	growth	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	OsOFP6 was shown to interfere with auxin in regulating lateral root growth and initiation, as RNAi plants had increased density of lateral roots under IAA (indole-3-acetic acid) treatment
OsOFP6	Os01g0823500	LOC_Os01g60810	grain	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	Knock-down of OsOFP6 by RNA interference (RNAi) resulted in semi-dwarf stature, altered grain shape, and shorter lateral roots
OsOFP6	Os01g0823500	LOC_Os01g60810	drought	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	Here, we report that rice OsOFP6 regulates growth and development, and alters responses to drought and cold stresses
OsOFP6	Os01g0823500	LOC_Os01g60810	drought	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	Furthermore, under drought conditions OE lines showed slower water loss and less accumulation of H2O2 compared with RNAi plants, which displayed faster water loss and higher H2O2, implying that OsOFP6 may confer both drought avoidance and drought tolerance in rice plants
OsOFP6	Os01g0823500	LOC_Os01g60810	tolerance	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	Furthermore, under drought conditions OE lines showed slower water loss and less accumulation of H2O2 compared with RNAi plants, which displayed faster water loss and higher H2O2, implying that OsOFP6 may confer both drought avoidance and drought tolerance in rice plants
OsOFP6	Os01g0823500	LOC_Os01g60810	cold stress	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	Here, we report that rice OsOFP6 regulates growth and development, and alters responses to drought and cold stresses
OsOFP6	Os01g0823500	LOC_Os01g60810	cold stress	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	In addition, under cold treatment OE and RNAi plants exhibited lower and higher relative electrical conductivity (REC), respectively, suggesting an important role of OsOFP6 in response to cold stress
OsOFP6	Os01g0823500	LOC_Os01g60810	drought tolerance	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	Furthermore, under drought conditions OE lines showed slower water loss and less accumulation of H2O2 compared with RNAi plants, which displayed faster water loss and higher H2O2, implying that OsOFP6 may confer both drought avoidance and drought tolerance in rice plants
OsOFP6	Os01g0823500	LOC_Os01g60810	auxin	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	OsOFP6 was shown to interfere with auxin in regulating lateral root growth and initiation, as RNAi plants had increased density of lateral roots under IAA (indole-3-acetic acid) treatment
OsOFP6	Os01g0823500	LOC_Os01g60810	auxin	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	OsOFP6 also affects polar auxin transport, which was demonstrated by the different responses of RNAi and OsOFP6-overexpression (OE) plants to treatment with N-1-naphthylphalamic acid (NPA)
OsOFP6	Os01g0823500	LOC_Os01g60810	stress	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	In addition, under cold treatment OE and RNAi plants exhibited lower and higher relative electrical conductivity (REC), respectively, suggesting an important role of OsOFP6 in response to cold stress
OsOFP6	Os01g0823500	LOC_Os01g60810	iaa	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	OsOFP6 was shown to interfere with auxin in regulating lateral root growth and initiation, as RNAi plants had increased density of lateral roots under IAA (indole-3-acetic acid) treatment
OsOFP6	Os01g0823500	LOC_Os01g60810	auxin transport	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	OsOFP6 also affects polar auxin transport, which was demonstrated by the different responses of RNAi and OsOFP6-overexpression (OE) plants to treatment with N-1-naphthylphalamic acid (NPA)
OsOFP6	Os01g0823500	LOC_Os01g60810	lateral root	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	Knock-down of OsOFP6 by RNA interference (RNAi) resulted in semi-dwarf stature, altered grain shape, and shorter lateral roots
OsOFP6	Os01g0823500	LOC_Os01g60810	lateral root	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	OsOFP6 was shown to interfere with auxin in regulating lateral root growth and initiation, as RNAi plants had increased density of lateral roots under IAA (indole-3-acetic acid) treatment
OsOFP6	Os01g0823500	LOC_Os01g60810	water loss	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	Furthermore, under drought conditions OE lines showed slower water loss and less accumulation of H2O2 compared with RNAi plants, which displayed faster water loss and higher H2O2, implying that OsOFP6 may confer both drought avoidance and drought tolerance in rice plants
OsOFP6	Os01g0823500	LOC_Os01g60810	IAA	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	OsOFP6 was shown to interfere with auxin in regulating lateral root growth and initiation, as RNAi plants had increased density of lateral roots under IAA (indole-3-acetic acid) treatment
OsOFP6	Os01g0823500	LOC_Os01g60810	leaf	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Transgenic plants with knock-down of OsOFP6 by RNA interference showed increased leaf angle, which resulted from the thinner secondary cell wall with reduced amounts of cellulose and lignin, whilst overexpression of OsOFP6 in rice led to the thinker secondary cell wall with increased lignin content
OsOFP6	Os01g0823500	LOC_Os01g60810	leaf	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Taken together, our study provides insights into the function of OsOFP6 in regulating leaf angle and the control of biosynthesis of secondary cell wall
OsOFP6	Os01g0823500	LOC_Os01g60810	xylem	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	The interaction of OsOFP6 and OSH15 enhanced the transcriptional activity of OSH15 which binds to the promoter of OsIRX9 (Oryza sativa IRREGULAR XYLEM 9)
OsOFP6	Os01g0823500	LOC_Os01g60810	cellulose	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Transgenic plants with knock-down of OsOFP6 by RNA interference showed increased leaf angle, which resulted from the thinner secondary cell wall with reduced amounts of cellulose and lignin, whilst overexpression of OsOFP6 in rice led to the thinker secondary cell wall with increased lignin content
OsOFP6	Os01g0823500	LOC_Os01g60810	cell wall	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Transgenic plants with knock-down of OsOFP6 by RNA interference showed increased leaf angle, which resulted from the thinner secondary cell wall with reduced amounts of cellulose and lignin, whilst overexpression of OsOFP6 in rice led to the thinker secondary cell wall with increased lignin content
OsOFP6	Os01g0823500	LOC_Os01g60810	cell wall	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Taken together, our study provides insights into the function of OsOFP6 in regulating leaf angle and the control of biosynthesis of secondary cell wall
OsOFP6	Os01g0823500	LOC_Os01g60810	lignin	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Transgenic plants with knock-down of OsOFP6 by RNA interference showed increased leaf angle, which resulted from the thinner secondary cell wall with reduced amounts of cellulose and lignin, whilst overexpression of OsOFP6 in rice led to the thinker secondary cell wall with increased lignin content
OsOFP6	Os01g0823500	LOC_Os01g60810	leaf angle	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis
OsOFP6	Os01g0823500	LOC_Os01g60810	leaf angle	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Transgenic plants with knock-down of OsOFP6 by RNA interference showed increased leaf angle, which resulted from the thinner secondary cell wall with reduced amounts of cellulose and lignin, whilst overexpression of OsOFP6 in rice led to the thinker secondary cell wall with increased lignin content.
OsOFP6	Os01g0823500	LOC_Os01g60810	leaf angle	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Taken together, our study provides insights into the function of OsOFP6 in regulating leaf angle and the control of biosynthesis of secondary cell wall.
OsOFP6	Os01g0823500	LOC_Os01g60810	secondary cell wall	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Taken together, our study provides insights into the function of OsOFP6 in regulating leaf angle and the control of biosynthesis of secondary cell wall.
OsOFP6	Os01g0823500	LOC_Os01g60810	secondary cell wall	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis
OsOFP8	Os01g0864000	LOC_Os01g64430	leaf	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	The gain-of-function mutant Osofp8 and OsOFP8 overexpression lines showed enhanced lamina joint inclination, whereas OsOFP8 RNAi transgenic lines showed more upright leaf phenotype, which suggest that OsOFP8 is involved in BR responses
OsOFP8	Os01g0864000	LOC_Os01g64430	growth	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	These results indicate that OsOFP8 is a substrate of OsGSK2 and the function of OsOFP8 in plant growth and development is at least partly through the BR signaling pathway
OsOFP8	Os01g0864000	LOC_Os01g64430	development	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	These results indicate that OsOFP8 is a substrate of OsGSK2 and the function of OsOFP8 in plant growth and development is at least partly through the BR signaling pathway
OsOFP8	Os01g0864000	LOC_Os01g64430	BR	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	Here we report in rice that OsOFP8 plays a positive role in BR signaling pathway
OsOFP8	Os01g0864000	LOC_Os01g64430	BR	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	The gain-of-function mutant Osofp8 and OsOFP8 overexpression lines showed enhanced lamina joint inclination, whereas OsOFP8 RNAi transgenic lines showed more upright leaf phenotype, which suggest that OsOFP8 is involved in BR responses
OsOFP8	Os01g0864000	LOC_Os01g64430	BR	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	These results indicate that OsOFP8 is a substrate of OsGSK2 and the function of OsOFP8 in plant growth and development is at least partly through the BR signaling pathway
OsOFP8	Os01g0864000	LOC_Os01g64430	BR signaling	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	Here we report in rice that OsOFP8 plays a positive role in BR signaling pathway
OsOFP8	Os01g0864000	LOC_Os01g64430	BR signaling	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	These results indicate that OsOFP8 is a substrate of OsGSK2 and the function of OsOFP8 in plant growth and development is at least partly through the BR signaling pathway
OsOFP8	Os01g0864000	LOC_Os01g64430	lamina	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	The gain-of-function mutant Osofp8 and OsOFP8 overexpression lines showed enhanced lamina joint inclination, whereas OsOFP8 RNAi transgenic lines showed more upright leaf phenotype, which suggest that OsOFP8 is involved in BR responses
OsOFP8	Os01g0864000	LOC_Os01g64430	cytoplasm	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	The phospphorylated OsOFP8 shuttles to the cytoplasm and is targeted for proteasomal degradation
OsOFP8	Os01g0864000	LOC_Os01g64430	plant growth	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	These results indicate that OsOFP8 is a substrate of OsGSK2 and the function of OsOFP8 in plant growth and development is at least partly through the BR signaling pathway
OsOFP8	Os01g0864000	LOC_Os01g64430	lamina joint	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	The gain-of-function mutant Osofp8 and OsOFP8 overexpression lines showed enhanced lamina joint inclination, whereas OsOFP8 RNAi transgenic lines showed more upright leaf phenotype, which suggest that OsOFP8 is involved in BR responses
OsOGT1	Os02g0489550	LOC_Os02g28830	O-GlcNAc transferase	Chemoproteomic profiling of O-GlcNAcylated proteins and identification of O-GlcNAc transferases in rice	Chemoproteomic profiling of O-GlcNAcylated proteins and identification of O-GlcNAc transferases in rice
OsOGT2	Os01g0915300|Os01g0915400	LOC_Os01g68680	O-GlcNAc transferase	Chemoproteomic profiling of O-GlcNAcylated proteins and identification of O-GlcNAc transferases in rice	Chemoproteomic profiling of O-GlcNAcylated proteins and identification of O-GlcNAc transferases in rice
OsOPL1	Os01g0852400	LOC_Os01g63310	grain	Rice co-expression network analysis identifies gene modules associated with agronomic traits.	 As an example, we identified a candidate gene, OsOPL1 (OCTOPUS-LIKE 1), a homologue of the Arabidopsis (Arabidopsis thaliana) OPS (OCTOPUS) gene, from a grain size module and verified it as a regulator of grain size via functional studies
OsOPL1	Os01g0852400	LOC_Os01g63310	grain size	Rice co-expression network analysis identifies gene modules associated with agronomic traits.	 As an example, we identified a candidate gene, OsOPL1 (OCTOPUS-LIKE 1), a homologue of the Arabidopsis (Arabidopsis thaliana) OPS (OCTOPUS) gene, from a grain size module and verified it as a regulator of grain size via functional studies
OsOPR1	Os06g0216300	LOC_Os06g11290	defense response	Identification of a Jasmonic Acid-Responsive Region in the Promoter of the Rice 12-Oxophytodienoic Acid Reductase 1 GeneOsOPR1	The rice 12-oxophytodienoic acid reductase 1 gene (OsOPR1), isolated as a jasmonic acid (JA)-responsive gene, has been suggested to be involved in defense responses in rice
OsOPR1	Os06g0216300	LOC_Os06g11290	jasmonic	Identification of a Jasmonic Acid-Responsive Region in the Promoter of the Rice 12-Oxophytodienoic Acid Reductase 1 GeneOsOPR1	The rice 12-oxophytodienoic acid reductase 1 gene (OsOPR1), isolated as a jasmonic acid (JA)-responsive gene, has been suggested to be involved in defense responses in rice
OsOPR1	Os06g0216300	LOC_Os06g11290	jasmonic	Identification of a Jasmonic Acid-Responsive Region in the Promoter of the Rice 12-Oxophytodienoic Acid Reductase 1 GeneOsOPR1	Identification of a Jasmonic Acid-Responsive Region in the Promoter of the Rice 12-Oxophytodienoic Acid Reductase 1 GeneOsOPR1
OsOPR1	Os06g0216300	LOC_Os06g11290	jasmonic acid	Identification of a Jasmonic Acid-Responsive Region in the Promoter of the Rice 12-Oxophytodienoic Acid Reductase 1 GeneOsOPR1	The rice 12-oxophytodienoic acid reductase 1 gene (OsOPR1), isolated as a jasmonic acid (JA)-responsive gene, has been suggested to be involved in defense responses in rice
OsOPR1	Os06g0216300	LOC_Os06g11290	jasmonic acid	Identification of a Jasmonic Acid-Responsive Region in the Promoter of the Rice 12-Oxophytodienoic Acid Reductase 1 GeneOsOPR1	Identification of a Jasmonic Acid-Responsive Region in the Promoter of the Rice 12-Oxophytodienoic Acid Reductase 1 GeneOsOPR1
OsOPR1	Os06g0216300	LOC_Os06g11290	defense	Diverse environmental cues transiently regulate OsOPR1 of the “octadecanoid pathway revealing its importance in rice defense/stress and development	Diverse environmental cues transiently regulate OsOPR1 of the “octadecanoid pathway revealing its importance in rice defense/stress and development
OsOPR1	Os06g0216300	LOC_Os06g11290	defense	Identification of a Jasmonic Acid-Responsive Region in the Promoter of the Rice 12-Oxophytodienoic Acid Reductase 1 GeneOsOPR1	The rice 12-oxophytodienoic acid reductase 1 gene (OsOPR1), isolated as a jasmonic acid (JA)-responsive gene, has been suggested to be involved in defense responses in rice
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	sterility	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice	Furthermore, complementation analysis using an Arabidopsis opr3 mutant indicated that the OsOPR7 gene, but not OsOPR1, was able to complement the phenotypes of male sterility in the mutant caused by JA deficiency, and that JA production in the opr3 mutant was also restored by the expression of the OsOPR7 gene
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	jasmonic acid	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	 ja 	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice	Here, we provide evidence that an OPR family gene in rice chromosome 8, designated OsOPR7, encodes the enzyme involved in the JA biosynthesis
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	 ja 	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice	5 h of mechanical wounding and drought stress, and the endogenous JA level started to increase in accordance with the increase in OsOPR7 expression
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	 ja 	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice	Furthermore, complementation analysis using an Arabidopsis opr3 mutant indicated that the OsOPR7 gene, but not OsOPR1, was able to complement the phenotypes of male sterility in the mutant caused by JA deficiency, and that JA production in the opr3 mutant was also restored by the expression of the OsOPR7 gene
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	 ja 	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice	We conclude that the OsOPR7 gene encodes the enzyme catalysing the reduction of natural (+)-cis-OPDA for the JA biosynthesis in rice
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	drought	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice	5 h of mechanical wounding and drought stress, and the endogenous JA level started to increase in accordance with the increase in OsOPR7 expression
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	jasmonic	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice	Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	map-based cloning	OPEN GLUME1: a key enzyme reducing the precursor of JA, participates in carbohydrate transport of lodicules during anthesis in rice.	 Map-based cloning and subsequent complementation tests confirmed that OG1 encodes a peroxisome-localized 12-oxo-phytodienoic acid reductase-a key enzyme that reduces the precursor of JA
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	 ja 	OPEN GLUME1: a key enzyme reducing the precursor of JA, participates in carbohydrate transport of lodicules during anthesis in rice.	 Loss-of-function of OG1 resulted in almost no JA accumulation
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	 ja 	OPEN GLUME1: a key enzyme reducing the precursor of JA, participates in carbohydrate transport of lodicules during anthesis in rice.	 Exogenous JA treatment completely rescued the defects caused by the og1 mutation
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	JA	OPEN GLUME1: a key enzyme reducing the precursor of JA, participates in carbohydrate transport of lodicules during anthesis in rice.	 Map-based cloning and subsequent complementation tests confirmed that OG1 encodes a peroxisome-localized 12-oxo-phytodienoic acid reductase-a key enzyme that reduces the precursor of JA
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	JA	OPEN GLUME1: a key enzyme reducing the precursor of JA, participates in carbohydrate transport of lodicules during anthesis in rice.	 Loss-of-function of OG1 resulted in almost no JA accumulation
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	JA	OPEN GLUME1: a key enzyme reducing the precursor of JA, participates in carbohydrate transport of lodicules during anthesis in rice.	 Exogenous JA treatment completely rescued the defects caused by the og1 mutation
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	mitochondria	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.	 Although both, Plant PeptoQ and ectopic OsOPR7, were acting in parallel and mostly additive, there are two specific differences: (i) OsOPR7 is strictly localised to the peroxisomes, while Plant PeptoQ found in mitochondria
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	mitochondria	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.	 (ii) Plant PeptoQ activates transcripts of NAC, a factor involved in retrograde signalling from mitochondria to the nucleus, while these transcripts are suppressed significantly in the cells overexpressing OsOPR7
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	jasmonate	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	oxidative stress	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	salinity	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.
OsOPR7|OG1	Os08g0459600	LOC_Os08g35740	oxidative	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.
OsOr	Os02g0651300	LOC_Os02g43500	calli	Biochemical Characterization of Orange-Colored Rice Calli Induced by Target Mutagenesis of OsOr Gene	Collectively, these findings indicate that targeted mutagenesis of the OsOr gene via CRISPR/Cas9-mediated genome editing results in β-carotene accumulation in rice calli.
OsOr	Os02g0651300	LOC_Os02g43500	carotene	Biochemical Characterization of Orange-Colored Rice Calli Induced by Target Mutagenesis of OsOr Gene	Collectively, these findings indicate that targeted mutagenesis of the OsOr gene via CRISPR/Cas9-mediated genome editing results in β-carotene accumulation in rice calli.
OsOr	Os02g0651300	LOC_Os02g43500	carotene accumulation	Biochemical Characterization of Orange-Colored Rice Calli Induced by Target Mutagenesis of OsOr Gene	Collectively, these findings indicate that targeted mutagenesis of the OsOr gene via CRISPR/Cas9-mediated genome editing results in β-carotene accumulation in rice calli.
OsORAP1	Os09g0365900	LOC_Os09g20090	leaf	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	It was localized in the apoplast as shown by transient expression of an OsORAP1/GFP fusion construct in tobacco leaf epidermal and mesophyll cells, but did not possess AO activity as shown by heterologous expression of OsORAP1 in Arabidopsis mutants with reduced background AO activity
OsORAP1	Os09g0365900	LOC_Os09g20090	leaf	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	A knock-out (KO) rice line of OsORAP1 showed enhanced tolerance to ozone stress (120 nL L-1 average daytime concentration, 20 days) as demonstrated by less formation of leaf visible symptoms (= cell death), less lipid peroxidation, and lower NADPH oxidase activity, indicating reduced active production of reactive oxygen species
OsORAP1	Os09g0365900	LOC_Os09g20090	tolerance	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	A knock-out (KO) rice line of OsORAP1 showed enhanced tolerance to ozone stress (120 nL L-1 average daytime concentration, 20 days) as demonstrated by less formation of leaf visible symptoms (= cell death), less lipid peroxidation, and lower NADPH oxidase activity, indicating reduced active production of reactive oxygen species
OsORAP1	Os09g0365900	LOC_Os09g20090	stress	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).
OsORAP1	Os09g0365900	LOC_Os09g20090	stress	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	A knock-out (KO) rice line of OsORAP1 showed enhanced tolerance to ozone stress (120 nL L-1 average daytime concentration, 20 days) as demonstrated by less formation of leaf visible symptoms (= cell death), less lipid peroxidation, and lower NADPH oxidase activity, indicating reduced active production of reactive oxygen species
OsORAP1	Os09g0365900	LOC_Os09g20090	stress	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	These observations suggested that OsORAP1 specifically induced cell death in ozone stress
OsORAP1	Os09g0365900	LOC_Os09g20090	cell death	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).
OsORAP1	Os09g0365900	LOC_Os09g20090	cell death	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	A knock-out (KO) rice line of OsORAP1 showed enhanced tolerance to ozone stress (120 nL L-1 average daytime concentration, 20 days) as demonstrated by less formation of leaf visible symptoms (= cell death), less lipid peroxidation, and lower NADPH oxidase activity, indicating reduced active production of reactive oxygen species
OsORAP1	Os09g0365900	LOC_Os09g20090	cell death	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	These observations suggested that OsORAP1 specifically induced cell death in ozone stress
OsORAP1	Os09g0365900	LOC_Os09g20090	cell death	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	These pieces of evidence suggested that OsORAP1 enhanced cell death in ozone stress, and its expression levels could explain the effect of a previously reported QTL
OsORAP1	Os09g0365900	LOC_Os09g20090	reactive oxygen species	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	A knock-out (KO) rice line of OsORAP1 showed enhanced tolerance to ozone stress (120 nL L-1 average daytime concentration, 20 days) as demonstrated by less formation of leaf visible symptoms (= cell death), less lipid peroxidation, and lower NADPH oxidase activity, indicating reduced active production of reactive oxygen species
OsORC1	Os06g0187000	LOC_Os06g08790	root apical meristem	Molecular cloning and characterization of a plant homologue of the origin recognition complex 1 (ORC1)	OsORC1 transcripts were expressed strongly in root tips and weakly in young leaves containing root apical meristem and marginal meristem, respectively
OsORC1	Os06g0187000	LOC_Os06g08790	root	Molecular cloning and characterization of a plant homologue of the origin recognition complex 1 (ORC1)	OsORC1 transcripts were expressed strongly in root tips and weakly in young leaves containing root apical meristem and marginal meristem, respectively
OsORC1	Os06g0187000	LOC_Os06g08790	growth	Molecular cloning and characterization of a plant homologue of the origin recognition complex 1 (ORC1)	The level of OsORC1 expression was significantly reduced when cell proliferation was temporarily halted by the removal of sucrose from the growth medium
OsORC1	Os06g0187000	LOC_Os06g08790	growth	Molecular cloning and characterization of a plant homologue of the origin recognition complex 1 (ORC1)	When the growth-halted cells began to re-grow following addition of sucrose to the medium, OsORC1 was again expressed at high levels
OsORC1	Os06g0187000	LOC_Os06g08790	meristem	Molecular cloning and characterization of a plant homologue of the origin recognition complex 1 (ORC1)	OsORC1 transcripts were expressed strongly in root tips and weakly in young leaves containing root apical meristem and marginal meristem, respectively
OsORC2	Os03g0184700	LOC_Os03g08640	root	Cloning and characterization of OsORC2, a new member of rice origin recognition complex	The tissue-specific expression pattern of OsORC2 reveals that it is abundant in roots, seedling and inflorescence meristem, while its expression level is much lower in mature leaves and shoot
OsORC2	Os03g0184700	LOC_Os03g08640	shoot	Cloning and characterization of OsORC2, a new member of rice origin recognition complex	The tissue-specific expression pattern of OsORC2 reveals that it is abundant in roots, seedling and inflorescence meristem, while its expression level is much lower in mature leaves and shoot
OsORC2	Os03g0184700	LOC_Os03g08640	meristem	Cloning and characterization of OsORC2, a new member of rice origin recognition complex	The tissue-specific expression pattern of OsORC2 reveals that it is abundant in roots, seedling and inflorescence meristem, while its expression level is much lower in mature leaves and shoot
OsORC2	Os03g0184700	LOC_Os03g08640	inflorescence	Cloning and characterization of OsORC2, a new member of rice origin recognition complex	The tissue-specific expression pattern of OsORC2 reveals that it is abundant in roots, seedling and inflorescence meristem, while its expression level is much lower in mature leaves and shoot
OsORC2	Os03g0184700	LOC_Os03g08640	seedling	Cloning and characterization of OsORC2, a new member of rice origin recognition complex	The tissue-specific expression pattern of OsORC2 reveals that it is abundant in roots, seedling and inflorescence meristem, while its expression level is much lower in mature leaves and shoot
OsORC3	Os10g0402200	LOC_Os10g26280	root	OsORC3 is required for lateral root development in rice	OsORC3 was strongly expressed in regions of active cell proliferation, including the primary root tip, stem base, lateral root primordium, emerged lateral root primordium, lateral root tip, young shoot, anther and ovary
OsORC3	Os10g0402200	LOC_Os10g26280	root	OsORC3 is required for lateral root development in rice	OsORC3 knockdown plants lacked lateral roots and had a dwarf phenotype
OsORC3	Os10g0402200	LOC_Os10g26280	root	OsORC3 is required for lateral root development in rice	Our results indicate that OsORC3 plays a crucial role in the emergence of lateral root primordia
OsORC3	Os10g0402200	LOC_Os10g26280	root	OsORC3 is required for lateral root development in rice	OsORC3 is required for lateral root development in rice
OsORC3	Os10g0402200	LOC_Os10g26280	lateral root	OsORC3 is required for lateral root development in rice	OsORC3 was strongly expressed in regions of active cell proliferation, including the primary root tip, stem base, lateral root primordium, emerged lateral root primordium, lateral root tip, young shoot, anther and ovary
OsORC3	Os10g0402200	LOC_Os10g26280	lateral root	OsORC3 is required for lateral root development in rice	OsORC3 knockdown plants lacked lateral roots and had a dwarf phenotype
OsORC3	Os10g0402200	LOC_Os10g26280	lateral root	OsORC3 is required for lateral root development in rice	Our results indicate that OsORC3 plays a crucial role in the emergence of lateral root primordia
OsORC3	Os10g0402200	LOC_Os10g26280	lateral root	OsORC3 is required for lateral root development in rice	OsORC3 is required for lateral root development in rice
OsORC3	Os10g0402200	LOC_Os10g26280	primary root	OsORC3 is required for lateral root development in rice	OsORC3 was strongly expressed in regions of active cell proliferation, including the primary root tip, stem base, lateral root primordium, emerged lateral root primordium, lateral root tip, young shoot, anther and ovary
OsORC3	Os10g0402200	LOC_Os10g26280	shoot	OsORC3 is required for lateral root development in rice	OsORC3 was strongly expressed in regions of active cell proliferation, including the primary root tip, stem base, lateral root primordium, emerged lateral root primordium, lateral root tip, young shoot, anther and ovary
OsORC3	Os10g0402200	LOC_Os10g26280	dwarf	OsORC3 is required for lateral root development in rice	OsORC3 knockdown plants lacked lateral roots and had a dwarf phenotype
OsORC3	Os10g0402200	LOC_Os10g26280	anther	OsORC3 is required for lateral root development in rice	OsORC3 was strongly expressed in regions of active cell proliferation, including the primary root tip, stem base, lateral root primordium, emerged lateral root primordium, lateral root tip, young shoot, anther and ovary
OsORC3	Os10g0402200	LOC_Os10g26280	stem	OsORC3 is required for lateral root development in rice	OsORC3 was strongly expressed in regions of active cell proliferation, including the primary root tip, stem base, lateral root primordium, emerged lateral root primordium, lateral root tip, young shoot, anther and ovary
OsORC3	Os10g0402200	LOC_Os10g26280	root development	OsORC3 is required for lateral root development in rice	OsORC3 is required for lateral root development in rice
OsORR2	None	None	nucleus	Overexpression of a B-type cytokinin response regulator ( OsORR2) reduces plant height in rice	The subcellular localization of OsORR2 was in cell nucleus
OsORR2	None	None	height	Overexpression of a B-type cytokinin response regulator ( OsORR2) reduces plant height in rice	Here, we found that overexpressing an OsORR2 gene (a type-B RR) could reduce plant height in rice compared with the wild type (WT)
OsORR2	None	None	plant height	Overexpression of a B-type cytokinin response regulator ( OsORR2) reduces plant height in rice	Here, we found that overexpressing an OsORR2 gene (a type-B RR) could reduce plant height in rice compared with the wild type (WT)
OsOSC12	Os08g0223900	None	pollen coat formation	Deficiency of a triterpene pathway results in humidity-sensitive genic male sterility in rice.	Here we report that deficiency of a grass conserved triterpene synthase, OsOSC12/OsPTS1, in rice leads to failure of pollen coat formation.
OsOSC12	Os08g0223900	None	pollen	Deficiency of a triterpene pathway results in humidity-sensitive genic male sterility in rice.	Here we report that deficiency of a grass conserved triterpene synthase, OsOSC12/OsPTS1, in rice leads to failure of pollen coat formation.
OsOSCA1.1	Os01g0534900	LOC_Os01g35050	salt	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in Oryza sativa.	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in Oryza sativa.
OsOSCA1.1	Os01g0534900	LOC_Os01g35050	salt stress	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in Oryza sativa.	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in Oryza sativa.
OsOSCA1.1	Os01g0534900	LOC_Os01g35050	stress	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in Oryza sativa.	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in Oryza sativa.
OsOSCA1.1	Os01g0534900	LOC_Os01g35050	calcium signaling	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in Oryza sativa	These results indicate that OsOSCA-mediated calcium signaling specifically regulates gene expression, in response to drought and salt stress in rice.
OsOSCA1.1	Os01g0534900	LOC_Os01g35050	drought	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in Oryza sativa	These results indicate that OsOSCA-mediated calcium signaling specifically regulates gene expression, in response to drought and salt stress in rice.
OsOSCA1.1	Os01g0534900	LOC_Os01g35050	drought stress	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in Oryza sativa	These results indicate that OsOSCA-mediated calcium signaling specifically regulates gene expression, in response to drought and salt stress in rice.
OsOSCA1.2	Os05g0594700	LOC_Os05g51630	osmotic stress	Cryo-EM structure of OSCA1.2 from Oryza sativa elucidates the mechanical basis of potential membrane hyperosmolality gating.	By combining biochemical, biophysical, and computational studies, we derive a model of how OSCA1.2 could mediate transport pathway gating under osmotic stress.
OsOSM1	Os12g0569500	LOC_Os12g38170	leaf	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Although there are two osmotin genes in rice, OsOSM1 is the one mainly expressed in leaf sheath at the booting stage, coinciding with the critical stage of SB development in the field
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	In this study, we found that overexpression of the OsOSM1 gene, encoding an osmotin protein belonging to the pathogenesis-related protein 5 family, is able to improve rice resistance to SB in field tests
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Overexpression of OsOSM1 (OsOSM1ox) in susceptible variety Xudao 3 significantly increases resistance to SB in transgenic rice
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	The OsOSM1 mRNA levels in different transgenic lines are found to be positively correlated with their SB resistance levels
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Taken together, our results demonstrate that OsOSM1 plays an important role in defense against rice SB disease and provides a new target for engineering resistance to SB
OsOSM1	Os12g0569500	LOC_Os12g38170	grain	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	development	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Although there are two osmotin genes in rice, OsOSM1 is the one mainly expressed in leaf sheath at the booting stage, coinciding with the critical stage of SB development in the field
OsOSM1	Os12g0569500	LOC_Os12g38170	development	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	sheath	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight
OsOSM1	Os12g0569500	LOC_Os12g38170	sheath	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Although there are two osmotin genes in rice, OsOSM1 is the one mainly expressed in leaf sheath at the booting stage, coinciding with the critical stage of SB development in the field
OsOSM1	Os12g0569500	LOC_Os12g38170	defense	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Taken together, our results demonstrate that OsOSM1 plays an important role in defense against rice SB disease and provides a new target for engineering resistance to SB
OsOSM1	Os12g0569500	LOC_Os12g38170	grain yield	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	yield	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	disease	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Taken together, our results demonstrate that OsOSM1 plays an important role in defense against rice SB disease and provides a new target for engineering resistance to SB
OsOSM1	Os12g0569500	LOC_Os12g38170	jasmonic	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	OsOSM1 is upregulated by jasmonic acid (JA); furthermore, JA-responsive marker genes are induced in OsOSM1ox lines
OsOSM1	Os12g0569500	LOC_Os12g38170	jasmonic acid	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	OsOSM1 is upregulated by jasmonic acid (JA); furthermore, JA-responsive marker genes are induced in OsOSM1ox lines
OsOSM1	Os12g0569500	LOC_Os12g38170	blight	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight
OsOSM1	Os12g0569500	LOC_Os12g38170	leaf	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Although there are two osmotin genes in rice, OsOSM1 is the one mainly expressed in leaf sheath at the booting stage, coinciding with the critical stage of SB development in the field
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	In this study, we found that overexpression of the OsOSM1 gene, encoding an osmotin protein belonging to the pathogenesis-related protein 5 family, is able to improve rice resistance to SB in field tests
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Overexpression of OsOSM1 (OsOSM1ox) in susceptible variety Xudao 3 significantly increases resistance to SB in transgenic rice
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	The OsOSM1 mRNA levels in different transgenic lines are found to be positively correlated with their SB resistance levels
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	resistance	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Taken together, our results demonstrate that OsOSM1 plays an important role in defense against rice SB disease and provides a new target for engineering resistance to SB
OsOSM1	Os12g0569500	LOC_Os12g38170	grain	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	development	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Although there are two osmotin genes in rice, OsOSM1 is the one mainly expressed in leaf sheath at the booting stage, coinciding with the critical stage of SB development in the field
OsOSM1	Os12g0569500	LOC_Os12g38170	development	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	sheath	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.
OsOSM1	Os12g0569500	LOC_Os12g38170	sheath	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Although there are two osmotin genes in rice, OsOSM1 is the one mainly expressed in leaf sheath at the booting stage, coinciding with the critical stage of SB development in the field
OsOSM1	Os12g0569500	LOC_Os12g38170	defense	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Taken together, our results demonstrate that OsOSM1 plays an important role in defense against rice SB disease and provides a new target for engineering resistance to SB
OsOSM1	Os12g0569500	LOC_Os12g38170	grain yield	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	yield	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Intriguingly, although extremely high levels of OsOSM1 were detrimental to rice development, appropriately elevated levels of OsSOM1 were obtained that enhanced rice SB resistance without affecting rice development or grain yield
OsOSM1	Os12g0569500	LOC_Os12g38170	disease	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Taken together, our results demonstrate that OsOSM1 plays an important role in defense against rice SB disease and provides a new target for engineering resistance to SB
OsOSM1	Os12g0569500	LOC_Os12g38170	jasmonic	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	OsOSM1 is upregulated by jasmonic acid (JA); furthermore, JA-responsive marker genes are induced in OsOSM1ox lines
OsOSM1	Os12g0569500	LOC_Os12g38170	jasmonic acid	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	OsOSM1 is upregulated by jasmonic acid (JA); furthermore, JA-responsive marker genes are induced in OsOSM1ox lines
OsOTLD1	Os04g0414100	LOC_Os04g33780	resistance	Reversible Histone H2B Monoubiquitination Fine-tunes Abscisic Acid Signaling and Drought Response in Rice.	Interestingly, MODD, a reported suppressor of ABA signaling and drought resistance through mediation of OsbZIP46 deactivation and degradation, can repress the H2Bub1 level in the OsbZIP46 target genes by recruiting a putative deubiquitinase OsOTLD1
OsOTLD1	Os04g0414100	LOC_Os04g33780	drought	Reversible Histone H2B Monoubiquitination Fine-tunes Abscisic Acid Signaling and Drought Response in Rice.	Interestingly, MODD, a reported suppressor of ABA signaling and drought resistance through mediation of OsbZIP46 deactivation and degradation, can repress the H2Bub1 level in the OsbZIP46 target genes by recruiting a putative deubiquitinase OsOTLD1
OsOTLD1	Os04g0414100	LOC_Os04g33780	ABA	Reversible Histone H2B Monoubiquitination Fine-tunes Abscisic Acid Signaling and Drought Response in Rice.	Interestingly, MODD, a reported suppressor of ABA signaling and drought resistance through mediation of OsbZIP46 deactivation and degradation, can repress the H2Bub1 level in the OsbZIP46 target genes by recruiting a putative deubiquitinase OsOTLD1
OsOTLD1	Os04g0414100	LOC_Os04g33780	ABA	Reversible Histone H2B Monoubiquitination Fine-tunes Abscisic Acid Signaling and Drought Response in Rice.	Interestingly, MODD, a reported suppressor of ABA signaling and drought resistance through mediation of OsbZIP46 deactivation and degradation, can repress the H2Bub1 level in the OsbZIP46 target genes by recruiting a putative deubiquitinase OsOTLD1
OsOTLD1	Os04g0414100	LOC_Os04g33780	drought resistance	Reversible Histone H2B Monoubiquitination Fine-tunes Abscisic Acid Signaling and Drought Response in Rice.	Interestingly, MODD, a reported suppressor of ABA signaling and drought resistance through mediation of OsbZIP46 deactivation and degradation, can repress the H2Bub1 level in the OsbZIP46 target genes by recruiting a putative deubiquitinase OsOTLD1
OSOTP51	Os02g0702000	LOC_Os02g47360	photosystem	A mutation of OSOTP 51 leads to impairment of photosystem I complex assembly and serious photo-damage in rice.	A mutation of OSOTP 51 leads to impairment of photosystem I complex assembly and serious photo-damage in rice.
OsOTS1	Os06g0487900	LOC_Os06g29310	root	SUMO is a critical regulator of salt stress responses in rice.	We demonstrate that OsOTS1 confers salt tolerance in rice by increasing root biomass
OsOTS1	Os06g0487900	LOC_Os06g29310	salinity	SUMO is a critical regulator of salt stress responses in rice.	High salinity triggers OsOTS1 degradation indicating that increased SUMO conjugation in rice plants during salt stress is in part achieved by down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	salt	SUMO is a critical regulator of salt stress responses in rice.	In this report, we reveal the Ubiquitin-like Protease (ULP) class of SUMO protease gene family in rice and demonstrate a critical role for OsOTS1 SUMO protease in salt stress
OsOTS1	Os06g0487900	LOC_Os06g29310	salt	SUMO is a critical regulator of salt stress responses in rice.	Transgenic rice plants overexpressing OsOTS1 have increased salt tolerance and a concomitant reduction in the levels of SUMOylated proteins
OsOTS1	Os06g0487900	LOC_Os06g29310	salt	SUMO is a critical regulator of salt stress responses in rice.	We demonstrate that OsOTS1 confers salt tolerance in rice by increasing root biomass
OsOTS1	Os06g0487900	LOC_Os06g29310	salt	SUMO is a critical regulator of salt stress responses in rice.	High salinity triggers OsOTS1 degradation indicating that increased SUMO conjugation in rice plants during salt stress is in part achieved by down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	salt	SUMO is a critical regulator of salt stress responses in rice.	OsOTS1 is nuclear localised indicating a direct requirement of OsOTS1 dependent deSUMOylation activity in rice nuclei for salt tolerance
OsOTS1	Os06g0487900	LOC_Os06g29310	tolerance	SUMO is a critical regulator of salt stress responses in rice.	Transgenic rice plants overexpressing OsOTS1 have increased salt tolerance and a concomitant reduction in the levels of SUMOylated proteins
OsOTS1	Os06g0487900	LOC_Os06g29310	tolerance	SUMO is a critical regulator of salt stress responses in rice.	We demonstrate that OsOTS1 confers salt tolerance in rice by increasing root biomass
OsOTS1	Os06g0487900	LOC_Os06g29310	tolerance	SUMO is a critical regulator of salt stress responses in rice.	OsOTS1 is nuclear localised indicating a direct requirement of OsOTS1 dependent deSUMOylation activity in rice nuclei for salt tolerance
OsOTS1	Os06g0487900	LOC_Os06g29310	salt tolerance	SUMO is a critical regulator of salt stress responses in rice.	Transgenic rice plants overexpressing OsOTS1 have increased salt tolerance and a concomitant reduction in the levels of SUMOylated proteins
OsOTS1	Os06g0487900	LOC_Os06g29310	salt tolerance	SUMO is a critical regulator of salt stress responses in rice.	We demonstrate that OsOTS1 confers salt tolerance in rice by increasing root biomass
OsOTS1	Os06g0487900	LOC_Os06g29310	salt tolerance	SUMO is a critical regulator of salt stress responses in rice.	OsOTS1 is nuclear localised indicating a direct requirement of OsOTS1 dependent deSUMOylation activity in rice nuclei for salt tolerance
OsOTS1	Os06g0487900	LOC_Os06g29310	salt stress	SUMO is a critical regulator of salt stress responses in rice.	In this report, we reveal the Ubiquitin-like Protease (ULP) class of SUMO protease gene family in rice and demonstrate a critical role for OsOTS1 SUMO protease in salt stress
OsOTS1	Os06g0487900	LOC_Os06g29310	salt stress	SUMO is a critical regulator of salt stress responses in rice.	High salinity triggers OsOTS1 degradation indicating that increased SUMO conjugation in rice plants during salt stress is in part achieved by down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	stress	SUMO is a critical regulator of salt stress responses in rice.	In this report, we reveal the Ubiquitin-like Protease (ULP) class of SUMO protease gene family in rice and demonstrate a critical role for OsOTS1 SUMO protease in salt stress
OsOTS1	Os06g0487900	LOC_Os06g29310	stress	SUMO is a critical regulator of salt stress responses in rice.	High salinity triggers OsOTS1 degradation indicating that increased SUMO conjugation in rice plants during salt stress is in part achieved by down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	biomass	SUMO is a critical regulator of salt stress responses in rice.	We demonstrate that OsOTS1 confers salt tolerance in rice by increasing root biomass
OsOTS1	Os06g0487900	LOC_Os06g29310	root	Rice OVERLY TOLERANT TO SALT 1(OTS1) SUMO protease is a positive regulator of seed germination and root development.	Knockdown of OsOTS1 gene expression affects root growth by primarily reducing cell size rather than cell division
OsOTS1	Os06g0487900	LOC_Os06g29310	growth	Rice OVERLY TOLERANT TO SALT 1(OTS1) SUMO protease is a positive regulator of seed germination and root development.	Knockdown of OsOTS1 gene expression affects root growth by primarily reducing cell size rather than cell division
OsOTS1	Os06g0487900	LOC_Os06g29310	salt	Rice OVERLY TOLERANT TO SALT 1(OTS1) SUMO protease is a positive regulator of seed germination and root development.	We recently identified the SUMO protease gene family in rice and demonstrated a role for OsOTS1 SUMO proteases in salt stress
OsOTS1	Os06g0487900	LOC_Os06g29310	cell division	Rice OVERLY TOLERANT TO SALT 1(OTS1) SUMO protease is a positive regulator of seed germination and root development.	Knockdown of OsOTS1 gene expression affects root growth by primarily reducing cell size rather than cell division
OsOTS1	Os06g0487900	LOC_Os06g29310	salt stress	Rice OVERLY TOLERANT TO SALT 1(OTS1) SUMO protease is a positive regulator of seed germination and root development.	We recently identified the SUMO protease gene family in rice and demonstrated a role for OsOTS1 SUMO proteases in salt stress
OsOTS1	Os06g0487900	LOC_Os06g29310	stress	Rice OVERLY TOLERANT TO SALT 1(OTS1) SUMO protease is a positive regulator of seed germination and root development.	We recently identified the SUMO protease gene family in rice and demonstrated a role for OsOTS1 SUMO proteases in salt stress
OsOTS1	Os06g0487900	LOC_Os06g29310	transcription factor	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	We reveal that OsOTS1 SUMO protease directly targets the ABA and drought responsive transcription factor OsbZIP23 for de-SUMOylation affecting its stability
OsOTS1	Os06g0487900	LOC_Os06g29310	drought	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	In this study, we reveal the role of the SUMO protease, OsOTS1 in mediating tolerance to drought in rice
OsOTS1	Os06g0487900	LOC_Os06g29310	drought	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	OsOTS1 depleted transgenic plants accumulate more ABA and exhibit more productive agronomic traits during drought whilst OsOTS1 overexpressing lines are drought sensitive but ABA insensitive
OsOTS1	Os06g0487900	LOC_Os06g29310	drought	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	Drought and ABA treatment stimulates the degradation of OsOTS1 protein indicating that SUMO conjugation is an important response to drought stress in rice achieved through down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	drought	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	We reveal that OsOTS1 SUMO protease directly targets the ABA and drought responsive transcription factor OsbZIP23 for de-SUMOylation affecting its stability
OsOTS1	Os06g0487900	LOC_Os06g29310	drought	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	OsOTS-RNAi lines show increased abundance of OsbZIP23 and increased drought responsive gene expression while OsOTS1 overexpressing lines show reduced levels of OsbZIP23 leading to suppressed drought responsive gene expression
OsOTS1	Os06g0487900	LOC_Os06g29310	tolerance	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	In this study, we reveal the role of the SUMO protease, OsOTS1 in mediating tolerance to drought in rice
OsOTS1	Os06g0487900	LOC_Os06g29310	ABA	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	OsOTS1 depleted transgenic plants accumulate more ABA and exhibit more productive agronomic traits during drought whilst OsOTS1 overexpressing lines are drought sensitive but ABA insensitive
OsOTS1	Os06g0487900	LOC_Os06g29310	ABA	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	Drought and ABA treatment stimulates the degradation of OsOTS1 protein indicating that SUMO conjugation is an important response to drought stress in rice achieved through down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	ABA	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	We reveal that OsOTS1 SUMO protease directly targets the ABA and drought responsive transcription factor OsbZIP23 for de-SUMOylation affecting its stability
OsOTS1	Os06g0487900	LOC_Os06g29310	stress	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	Drought and ABA treatment stimulates the degradation of OsOTS1 protein indicating that SUMO conjugation is an important response to drought stress in rice achieved through down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	drought stress	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	Drought and ABA treatment stimulates the degradation of OsOTS1 protein indicating that SUMO conjugation is an important response to drought stress in rice achieved through down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	drought stress	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	Drought and ABA treatment stimulates the degradation of OsOTS1 protein indicating that SUMO conjugation is an important response to drought stress in rice achieved through down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	ABA	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	OsOTS1 depleted transgenic plants accumulate more ABA and exhibit more productive agronomic traits during drought whilst OsOTS1 overexpressing lines are drought sensitive but ABA insensitive
OsOTS1	Os06g0487900	LOC_Os06g29310	ABA	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	Drought and ABA treatment stimulates the degradation of OsOTS1 protein indicating that SUMO conjugation is an important response to drought stress in rice achieved through down-regulation of OTS1/2 activity
OsOTS1	Os06g0487900	LOC_Os06g29310	ABA	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	We reveal that OsOTS1 SUMO protease directly targets the ABA and drought responsive transcription factor OsbZIP23 for de-SUMOylation affecting its stability
OsOxi1	Os04g0488700	LOC_Os04g41160	defense response	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	Taken together, our data suggest that OsOxi1 positively regulates defense responses through the phosphorylation of OsPti1a, causing the release from an OsPti1a-dependent inhibition of the responses
OsOxi1	Os04g0488700	LOC_Os04g41160	disease resistance	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	Overexpression of OsOxi1 enhanced basal resistance to the blast fungus, indicating that OsOxi1 positively regulates disease resistance
OsOxi1	Os04g0488700	LOC_Os04g41160	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	The AGC kinase OsOxi1, which has been isolated as an interactor with OsPti1a, positively regulates basal disease resistance in rice
OsOxi1	Os04g0488700	LOC_Os04g41160	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	We show here that OsPdk1 acts upstream of the OsOxi1-OsPti1a signal cascade in disease resistance in rice
OsOxi1	Os04g0488700	LOC_Os04g41160	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Taken together, these results suggest that OsPdk1 positively regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice
OsOxi1	Os04g0488700	LOC_Os04g41160	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice
OsOxi1	Os04g0488700	LOC_Os04g41160	defense	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	Taken together, our data suggest that OsOxi1 positively regulates defense responses through the phosphorylation of OsPti1a, causing the release from an OsPti1a-dependent inhibition of the responses
OsOxi1	Os04g0488700	LOC_Os04g41160	magnaporthe oryzae	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	OsOxi1 is specifically expressed at infection sites where ROS are produced after inoculation with a blast fungus, Magnaporthe oryzae
OsOxi1	Os04g0488700	LOC_Os04g41160	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	The AGC kinase OsOxi1, which has been isolated as an interactor with OsPti1a, positively regulates basal disease resistance in rice
OsOxi1	Os04g0488700	LOC_Os04g41160	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	We show here that OsPdk1 acts upstream of the OsOxi1-OsPti1a signal cascade in disease resistance in rice
OsOxi1	Os04g0488700	LOC_Os04g41160	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Taken together, these results suggest that OsPdk1 positively regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice
OsOxi1	Os04g0488700	LOC_Os04g41160	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice
OsOxi1	Os04g0488700	LOC_Os04g41160	blast	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	OsOxi1 is specifically expressed at infection sites where ROS are produced after inoculation with a blast fungus, Magnaporthe oryzae
OsOxi1	Os04g0488700	LOC_Os04g41160	blast	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	Overexpression of OsOxi1 enhanced basal resistance to the blast fungus, indicating that OsOxi1 positively regulates disease resistance
OsOxi1	Os04g0488700	LOC_Os04g41160	disease	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	Overexpression of OsOxi1 enhanced basal resistance to the blast fungus, indicating that OsOxi1 positively regulates disease resistance
OsOxi1	Os04g0488700	LOC_Os04g41160	disease	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	OsOxi1 phosphorylates Thr-233 of OsPti1a and a point mutation of Thr-233 enhanced disease susceptibility to a bacterial pathogen Xanthomonas oryzae pv
OsOXO2	Os03g0693800	LOC_Os03g48760	blast resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	In the present study, we have confirmed that the three Oxalate oxidase (OXO) genes, OsOXO2, OsOXO3 and OsOXO4 from a blast-resistant cultivar BC10 function in panicle blast resistance in rice.
OsOXO3	Os03g0693900	LOC_Os03g48770	resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice
OsOXO3	Os03g0693900	LOC_Os03g48770	resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Results: In the present study, we have confirmed that the three Oxalate oxidase (OXO) genes, OsOXO2, OsOXO3 and OsOXO4 from a blast-resistant cultivar BC10 function in panicle blast resistance in rice
OsOXO3	Os03g0693900	LOC_Os03g48770	resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Simultaneous silencing of OsOXO2, OsOXO3 and OsOXO4 decreased rice resistance to panicle blast, whereas the OsOXO2, OsOXO3 and OsOXO4 overexpression rice plants individually showed enhanced panicle blast resistance
OsOXO3	Os03g0693900	LOC_Os03g48770	resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Conclusion: OsOXO2, OsOXO3 and OsOXO4 positively regulate panicle blast resistance in rice
OsOXO3	Os03g0693900	LOC_Os03g48770	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice
OsOXO3	Os03g0693900	LOC_Os03g48770	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Results: In the present study, we have confirmed that the three Oxalate oxidase (OXO) genes, OsOXO2, OsOXO3 and OsOXO4 from a blast-resistant cultivar BC10 function in panicle blast resistance in rice
OsOXO3	Os03g0693900	LOC_Os03g48770	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The expression of OsOXO2, OsOXO3 and OsOXO4 were induced by panicle blast inoculation
OsOXO3	Os03g0693900	LOC_Os03g48770	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Simultaneous silencing of OsOXO2, OsOXO3 and OsOXO4 decreased rice resistance to panicle blast, whereas the OsOXO2, OsOXO3 and OsOXO4 overexpression rice plants individually showed enhanced panicle blast resistance
OsOXO3	Os03g0693900	LOC_Os03g48770	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Conclusion: OsOXO2, OsOXO3 and OsOXO4 positively regulate panicle blast resistance in rice
OsOXO3	Os03g0693900	LOC_Os03g48770	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice
OsOXO3	Os03g0693900	LOC_Os03g48770	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Results: In the present study, we have confirmed that the three Oxalate oxidase (OXO) genes, OsOXO2, OsOXO3 and OsOXO4 from a blast-resistant cultivar BC10 function in panicle blast resistance in rice
OsOXO3	Os03g0693900	LOC_Os03g48770	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The expression of OsOXO2, OsOXO3 and OsOXO4 were induced by panicle blast inoculation
OsOXO3	Os03g0693900	LOC_Os03g48770	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Simultaneous silencing of OsOXO2, OsOXO3 and OsOXO4 decreased rice resistance to panicle blast, whereas the OsOXO2, OsOXO3 and OsOXO4 overexpression rice plants individually showed enhanced panicle blast resistance
OsOXO3	Os03g0693900	LOC_Os03g48770	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Conclusion: OsOXO2, OsOXO3 and OsOXO4 positively regulate panicle blast resistance in rice
OsOXO3	Os03g0693900	LOC_Os03g48770	blast resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice
OsOXO3	Os03g0693900	LOC_Os03g48770	blast resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Results: In the present study, we have confirmed that the three Oxalate oxidase (OXO) genes, OsOXO2, OsOXO3 and OsOXO4 from a blast-resistant cultivar BC10 function in panicle blast resistance in rice
OsOXO3	Os03g0693900	LOC_Os03g48770	blast resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Simultaneous silencing of OsOXO2, OsOXO3 and OsOXO4 decreased rice resistance to panicle blast, whereas the OsOXO2, OsOXO3 and OsOXO4 overexpression rice plants individually showed enhanced panicle blast resistance
OsOXO3	Os03g0693900	LOC_Os03g48770	blast resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Conclusion: OsOXO2, OsOXO3 and OsOXO4 positively regulate panicle blast resistance in rice
OsOXO4	Os03g0694000	LOC_Os03g48780	resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice
OsOXO4	Os03g0694000	LOC_Os03g48780	resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Results: In the present study, we have confirmed that the three Oxalate oxidase (OXO) genes, OsOXO2, OsOXO3 and OsOXO4 from a blast-resistant cultivar BC10 function in panicle blast resistance in rice
OsOXO4	Os03g0694000	LOC_Os03g48780	resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Simultaneous silencing of OsOXO2, OsOXO3 and OsOXO4 decreased rice resistance to panicle blast, whereas the OsOXO2, OsOXO3 and OsOXO4 overexpression rice plants individually showed enhanced panicle blast resistance
OsOXO4	Os03g0694000	LOC_Os03g48780	resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Conclusion: OsOXO2, OsOXO3 and OsOXO4 positively regulate panicle blast resistance in rice
OsOXO4	Os03g0694000	LOC_Os03g48780	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice
OsOXO4	Os03g0694000	LOC_Os03g48780	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Results: In the present study, we have confirmed that the three Oxalate oxidase (OXO) genes, OsOXO2, OsOXO3 and OsOXO4 from a blast-resistant cultivar BC10 function in panicle blast resistance in rice
OsOXO4	Os03g0694000	LOC_Os03g48780	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The expression of OsOXO2, OsOXO3 and OsOXO4 were induced by panicle blast inoculation
OsOXO4	Os03g0694000	LOC_Os03g48780	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Simultaneous silencing of OsOXO2, OsOXO3 and OsOXO4 decreased rice resistance to panicle blast, whereas the OsOXO2, OsOXO3 and OsOXO4 overexpression rice plants individually showed enhanced panicle blast resistance
OsOXO4	Os03g0694000	LOC_Os03g48780	panicle	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Conclusion: OsOXO2, OsOXO3 and OsOXO4 positively regulate panicle blast resistance in rice
OsOXO4	Os03g0694000	LOC_Os03g48780	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice
OsOXO4	Os03g0694000	LOC_Os03g48780	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Results: In the present study, we have confirmed that the three Oxalate oxidase (OXO) genes, OsOXO2, OsOXO3 and OsOXO4 from a blast-resistant cultivar BC10 function in panicle blast resistance in rice
OsOXO4	Os03g0694000	LOC_Os03g48780	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The expression of OsOXO2, OsOXO3 and OsOXO4 were induced by panicle blast inoculation
OsOXO4	Os03g0694000	LOC_Os03g48780	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Simultaneous silencing of OsOXO2, OsOXO3 and OsOXO4 decreased rice resistance to panicle blast, whereas the OsOXO2, OsOXO3 and OsOXO4 overexpression rice plants individually showed enhanced panicle blast resistance
OsOXO4	Os03g0694000	LOC_Os03g48780	blast	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Conclusion: OsOXO2, OsOXO3 and OsOXO4 positively regulate panicle blast resistance in rice
OsOXO4	Os03g0694000	LOC_Os03g48780	blast resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice
OsOXO4	Os03g0694000	LOC_Os03g48780	blast resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Results: In the present study, we have confirmed that the three Oxalate oxidase (OXO) genes, OsOXO2, OsOXO3 and OsOXO4 from a blast-resistant cultivar BC10 function in panicle blast resistance in rice
OsOXO4	Os03g0694000	LOC_Os03g48780	blast resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Simultaneous silencing of OsOXO2, OsOXO3 and OsOXO4 decreased rice resistance to panicle blast, whereas the OsOXO2, OsOXO3 and OsOXO4 overexpression rice plants individually showed enhanced panicle blast resistance
OsOXO4	Os03g0694000	LOC_Os03g48780	blast resistance	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice	Conclusion: OsOXO2, OsOXO3 and OsOXO4 positively regulate panicle blast resistance in rice
OsP5CR	Os01g0948400	LOC_Os01g71990	salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Under salt stress, topical ABA application-induced OsP5CS1 gene expression only in the salt-resistant line but up-regulated OsP5CR gene expression in both rice lines, suggesting that the increased proline accumulation and salt resistance induced by topical ABA application may result from the up-regulation of OsP5CR and not, directly at least, from OsP5CS1
OsP5CR	Os01g0948400	LOC_Os01g71990	salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress
OsP5CR	Os01g0948400	LOC_Os01g71990	ABA	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Under salt stress, topical ABA application-induced OsP5CS1 gene expression only in the salt-resistant line but up-regulated OsP5CR gene expression in both rice lines, suggesting that the increased proline accumulation and salt resistance induced by topical ABA application may result from the up-regulation of OsP5CR and not, directly at least, from OsP5CS1
OsP5CR	Os01g0948400	LOC_Os01g71990	ABA	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	These data suggest the role of the calmodulin signaling cascade and the induction of OsP5CR gene expression in proline accumulation by exogenous ABA application
OsP5CR	Os01g0948400	LOC_Os01g71990	ABA	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress
OsP5CR	Os01g0948400	LOC_Os01g71990	resistant	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Under salt stress, topical ABA application-induced OsP5CS1 gene expression only in the salt-resistant line but up-regulated OsP5CR gene expression in both rice lines, suggesting that the increased proline accumulation and salt resistance induced by topical ABA application may result from the up-regulation of OsP5CR and not, directly at least, from OsP5CS1
OsP5CR	Os01g0948400	LOC_Os01g71990	salt	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Under salt stress, topical ABA application-induced OsP5CS1 gene expression only in the salt-resistant line but up-regulated OsP5CR gene expression in both rice lines, suggesting that the increased proline accumulation and salt resistance induced by topical ABA application may result from the up-regulation of OsP5CR and not, directly at least, from OsP5CS1
OsP5CR	Os01g0948400	LOC_Os01g71990	salt	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress
OsP5CR	Os01g0948400	LOC_Os01g71990	salt tolerance	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	In both rice lines, salt-stress induced OsP5CS1 gene expression, suggesting that proline accumulation occurs via OsP5CS1 gene expression during salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	An increase in the endogenous ABA level was required for the induction of OsP5CS1 gene expression by salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Under salt stress, topical ABA application-induced OsP5CS1 gene expression only in the salt-resistant line but up-regulated OsP5CR gene expression in both rice lines, suggesting that the increased proline accumulation and salt resistance induced by topical ABA application may result from the up-regulation of OsP5CR and not, directly at least, from OsP5CS1
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	Over-expression of OsCOIN in transgenic rice lines significantly enhanced their tolerance to cold, salt and drought, accompanied by an up-regulation of OsP5CS expression and an increase of cellular proline level
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	breeding	Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L.	Moreover, the levels of expression of OsP5CS mRNA and content of proline under salt stress condition were compared between a salt-tolerant cultivar, Dee-gee-woo-gen (DGWG) and a salt-sensitive breeding line, IR28
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt	Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L.	Northern blot analysis revealed that the gene for P5CS (OsP5CS) was induced by high salt, dehydration, treatment of ABA and cold treatment, while it was not induced by heat treatment
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt	Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L.	Moreover, the levels of expression of OsP5CS mRNA and content of proline under salt stress condition were compared between a salt-tolerant cultivar, Dee-gee-woo-gen (DGWG) and a salt-sensitive breeding line, IR28
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	seedling	Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L.	A cDNA for delta1-pyrroline-5-carboxylate (P5C) synthetase (cOsP5CS), an enzyme involved in the biosynthesis of proline, was isolated and characterized from a cDNA library prepared from 14-day-old seedlings of Oryza sativa cv
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt tolerance	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	drought	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice	Over-expression of OsCOIN in transgenic rice lines significantly enhanced their tolerance to cold, salt and drought, accompanied by an up-regulation of OsP5CS expression and an increase of cellular proline level
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	resistant	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Under salt stress, topical ABA application-induced OsP5CS1 gene expression only in the salt-resistant line but up-regulated OsP5CR gene expression in both rice lines, suggesting that the increased proline accumulation and salt resistance induced by topical ABA application may result from the up-regulation of OsP5CR and not, directly at least, from OsP5CS1
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt stress	Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L.	Moreover, the levels of expression of OsP5CS mRNA and content of proline under salt stress condition were compared between a salt-tolerant cultivar, Dee-gee-woo-gen (DGWG) and a salt-sensitive breeding line, IR28
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	In both rice lines, salt-stress induced OsP5CS1 gene expression, suggesting that proline accumulation occurs via OsP5CS1 gene expression during salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	An increase in the endogenous ABA level was required for the induction of OsP5CS1 gene expression by salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Under salt stress, topical ABA application-induced OsP5CS1 gene expression only in the salt-resistant line but up-regulated OsP5CR gene expression in both rice lines, suggesting that the increased proline accumulation and salt resistance induced by topical ABA application may result from the up-regulation of OsP5CR and not, directly at least, from OsP5CS1
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	oxidative	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	salt stress	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	ABA	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	An increase in the endogenous ABA level was required for the induction of OsP5CS1 gene expression by salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	ABA	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Under salt stress, topical ABA application-induced OsP5CS1 gene expression only in the salt-resistant line but up-regulated OsP5CR gene expression in both rice lines, suggesting that the increased proline accumulation and salt resistance induced by topical ABA application may result from the up-regulation of OsP5CR and not, directly at least, from OsP5CS1
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	ABA	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress
OsP5CS|OsP5CS1	Os05g0455500	LOC_Os05g38150	ABA	Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L.	Northern blot analysis revealed that the gene for P5CS (OsP5CS) was induced by high salt, dehydration, treatment of ABA and cold treatment, while it was not induced by heat treatment
OsPAGN1	Os07g0421800	LOC_Os07g23970	growth	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 Therefore, our findings have clarified the OsPAGN1 functions related to rice growth and grain development
OsPAGN1	Os07g0421800	LOC_Os07g23970	development	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 Therefore, our findings have clarified the OsPAGN1 functions related to rice growth and grain development
OsPAGN1	Os07g0421800	LOC_Os07g23970	grain	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 Therefore, our findings have clarified the OsPAGN1 functions related to rice growth and grain development
OsPAGN1	Os07g0421800	LOC_Os07g23970	panicle	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 We demonstrated that OsPAGN1 can interact directly with OsCNR10 (CELL NUMBER REGULATOR10), which negatively regulates the number of rice grains per panicle
OsPAGN1	Os07g0421800	LOC_Os07g23970	grains per panicle	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 We demonstrated that OsPAGN1 can interact directly with OsCNR10 (CELL NUMBER REGULATOR10), which negatively regulates the number of rice grains per panicle
OsPAGN1	Os07g0421800	LOC_Os07g23970	yield	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 Thus, OsPAGN1 may be useful for the genetic improvement of plant architecture and yield
OsPAGN1	Os07g0421800	LOC_Os07g23970	architecture	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 Thus, OsPAGN1 may be useful for the genetic improvement of plant architecture and yield
OsPAGN1	Os07g0421800	LOC_Os07g23970	plant architecture	A New RING Finger Protein, PLANT ARCHITECTURE and GRAIN NUMBER 1, Affects Plant Architecture and Grain Yield in Rice.	 Thus, OsPAGN1 may be useful for the genetic improvement of plant architecture and yield
OsPAL2;3	Os02g0626600	LOC_Os02g41670	transcription factor	OsMYB57 transcriptionally regulates OsMAPK11 to interact with OsPAL2;3 and modulate rice allelopathy.	The transcriptional ability of OsPAL2;3 was higher in the allelopathic rice PI312777 than in the non-allelopathic rice Lemont, and OsPAL2;3 was negatively regulated by Whirly transcription factors
OsPAL2;3	Os02g0626600	LOC_Os02g41670	Kinase	OsMYB57 transcriptionally regulates OsMAPK11 to interact with OsPAL2;3 and modulate rice allelopathy.	Chromatin immunoprecipitation incorporated with HiSeq demonstrated that OsMYB57 transcriptionally regulated a mitogen-activated protein kinase (OsMAPK11); in addition, OsMAPK11 interacted with OsPAL2;3
OsPAL2;3	Os02g0626600	LOC_Os02g41670	protein kinase	OsMYB57 transcriptionally regulates OsMAPK11 to interact with OsPAL2;3 and modulate rice allelopathy.	Chromatin immunoprecipitation incorporated with HiSeq demonstrated that OsMYB57 transcriptionally regulated a mitogen-activated protein kinase (OsMAPK11); in addition, OsMAPK11 interacted with OsPAL2;3
OsPAL6	Os04g0518400	LOC_Os04g43800	transcription factor	An R2R3 MYB transcription factor confers brown planthopper resistance by regulating the phenylalanine ammonia-lyase pathway in rice.	Furthermore, we show that expression of OsPAL6 and OsPAL8 in response to BPH attack is directly up-regulated by OsMYB30, an R2R3 MYB transcription factor
OsPAL8	Os11g0708900	LOC_Os11g48110	transcription factor	An R2R3 MYB transcription factor confers brown planthopper resistance by regulating the phenylalanine ammonia-lyase pathway in rice.	Furthermore, we show that expression of OsPAL6 and OsPAL8 in response to BPH attack is directly up-regulated by OsMYB30, an R2R3 MYB transcription factor
OsPAL8	Os11g0708900	LOC_Os11g48110	resistance	An R2R3 MYB transcription factor confers brown planthopper resistance by regulating the phenylalanine ammonia-lyase pathway in rice.	Knockdown of OsPALs significantly reduces BPH resistance, whereas overexpression of OsPAL8 in a susceptible rice cultivar significantly enhances its BPH resistance
OsPAO	Os03g0146400	LOC_Os03g05310	leaf	Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice	RNA interference knockdown of OsPAO led to pheophorbide a accumulation in leaves (especially dark-induced senescent leaves) and leaf death from regeneration stage onwards, even transgenic plants inviability after transplantation
OsPAO	Os03g0146400	LOC_Os03g05310	senescence	Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice	These results suggest that OsPAO and OsRCCR1 play key roles in senescence and are involved in wound responses
OsPAO1|PAO1	Os01g0710200	LOC_Os01g51320	flower	Characterization of five polyamine oxidase isoforms in Arabidopsis thaliana	AtPAO1 seems to have a specific function in flower organ
OsPAO1|PAO1	Os01g0710200	LOC_Os01g51320	root	Oryza sativa polyamine oxidase 1 back-converts tetraamines, spermine and thermospermine, to spermidine	Expression of OsPAO1 appears to be quite low under physiological conditions, but is markedly induced in rice roots by spermine (Spm) or T-Spm treatment
OsPAO1|PAO1	Os01g0710200	LOC_Os01g51320	seedling	Constitutively and highly expressed Oryza sativa polyamine oxidases localize in peroxisomes and catalyze polyamine back conversion	Of the seven PAOs, OsPAO3, OsPAO4, and OsPAO5 transcripts were most abundant in 2-week-old seedlings and mature plants, while OsPAO1, OsPAO2, OsPAO6, and OsPAO7 were expressed at very low levels with different tissue specificities
OsPAO3	Os04g0623300	LOC_Os04g53190|LOC_Os04g53195	seed	Polyamine oxidase 3 is involved in salt tolerance at the germination stage in rice.	 Overexpression of OsPAO3 increases activity of polyamine oxidases, enhancing the polyamine content in seed coleoptiles
OsPAO3	Os04g0623300	LOC_Os04g53190|LOC_Os04g53195	salt	Polyamine oxidase 3 is involved in salt tolerance at the germination stage in rice.	 OsPAO3 is up-regulated under salt stress at the germination stage and highly expressed in various organs
OsPAO3	Os04g0623300	LOC_Os04g53190|LOC_Os04g53195	salt stress	Polyamine oxidase 3 is involved in salt tolerance at the germination stage in rice.	 OsPAO3 is up-regulated under salt stress at the germination stage and highly expressed in various organs
OsPAO3	Os04g0623300	LOC_Os04g53190|LOC_Os04g53195	stress	Polyamine oxidase 3 is involved in salt tolerance at the germination stage in rice.	 OsPAO3 is up-regulated under salt stress at the germination stage and highly expressed in various organs
OsPAO5	Os04g0671300	LOC_Os04g57560	seedlings	Targeted Mutagenesis of POLYAMINE OXIDASE 5 that Negatively Regulates Mesocotyl Elongation Enables the Generation of Direct-seeding Rice with Improved Grain Yield	Here, we established that OsPAO5 expression in rice seedlings is increased in the presence of light, and inhibited by darkness
OsPAO5	Os04g0671300	LOC_Os04g57560	grain	Targeted Mutagenesis of POLYAMINE OXIDASE 5 that Negatively Regulates Mesocotyl Elongation Enables the Generation of Direct-seeding Rice with Improved Grain Yield	Intriguingly, knocking out of OsPAO5 can remarkably increase the grain weight, grain numbers and yield potential
OsPAO5	Os04g0671300	LOC_Os04g57560	domestication	Targeted Mutagenesis of POLYAMINE OXIDASE 5 that Negatively Regulates Mesocotyl Elongation Enables the Generation of Direct-seeding Rice with Improved Grain Yield	Nucleotide polymorphism analysis revealed that an SNP variation (PAO5-578G/A) in the 578 bp upstream of OsPAO5 start codon alters its expression, which is further selected during rice mesocotyl domestication
OsPAO5	Os04g0671300	LOC_Os04g57560	grain number	Targeted Mutagenesis of POLYAMINE OXIDASE 5 that Negatively Regulates Mesocotyl Elongation Enables the Generation of Direct-seeding Rice with Improved Grain Yield	Intriguingly, knocking out of OsPAO5 can remarkably increase the grain weight, grain numbers and yield potential
OsPAO5	Os04g0671300	LOC_Os04g57560	yield	Targeted Mutagenesis of POLYAMINE OXIDASE 5 that Negatively Regulates Mesocotyl Elongation Enables the Generation of Direct-seeding Rice with Improved Grain Yield	Intriguingly, knocking out of OsPAO5 can remarkably increase the grain weight, grain numbers and yield potential
OsPAO5	Os04g0671300	LOC_Os04g57560	grain weight	Targeted Mutagenesis of POLYAMINE OXIDASE 5 that Negatively Regulates Mesocotyl Elongation Enables the Generation of Direct-seeding Rice with Improved Grain Yield	Intriguingly, knocking out of OsPAO5 can remarkably increase the grain weight, grain numbers and yield potential
OsPAP10a	Os01g0776600	LOC_Os01g56880	shoot	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	In gel activity assays of root and shoot protein extracts, it was revealed that OsPAP10a is a major acid phosphatase isoform induced by Pi starvation
OsPAP10a	Os01g0776600	LOC_Os01g56880	shoot	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	Constitutive overexpression of OsPAP10a results in a significant increase of phosphatase activity in both shoot and root protein extracts
OsPAP10a	Os01g0776600	LOC_Os01g56880	root	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	In gel activity assays of root and shoot protein extracts, it was revealed that OsPAP10a is a major acid phosphatase isoform induced by Pi starvation
OsPAP10a	Os01g0776600	LOC_Os01g56880	root	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	Constitutive overexpression of OsPAP10a results in a significant increase of phosphatase activity in both shoot and root protein extracts
OsPAP10a	Os01g0776600	LOC_Os01g56880	root	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	In vivo root 5-bromo-4-chloro-3-indolyl-phosphate (BCIP) assays and activity measurements on external media showed that OsPAP10a is a root-associated APase
OsPAP10a	Os01g0776600	LOC_Os01g56880	root	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice
OsPAP10a	Os01g0776600	LOC_Os01g56880	transcription factor	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	The transcript abundance of OsPAP10a is specifically induced by Pi deficiency and is controlled by OsPHR2, the central transcription factor controlling Pi homeostasis
OsPAP10a	Os01g0776600	LOC_Os01g56880	homeostasis	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	The transcript abundance of OsPAP10a is specifically induced by Pi deficiency and is controlled by OsPHR2, the central transcription factor controlling Pi homeostasis
OsPAP10a	Os01g0776600	LOC_Os01g56880	breeding	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	These results indicate that OsPAP10a can potentially be used for crop breeding to improve the efficiency of P use
OsPAP10a	Os01g0776600	LOC_Os01g56880	phosphorus	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice
OsPAP10a	Os01g0776600	LOC_Os01g56880	pi	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	The transcript abundance of OsPAP10a is specifically induced by Pi deficiency and is controlled by OsPHR2, the central transcription factor controlling Pi homeostasis
OsPAP10a	Os01g0776600	LOC_Os01g56880	pi	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	In gel activity assays of root and shoot protein extracts, it was revealed that OsPAP10a is a major acid phosphatase isoform induced by Pi starvation
OsPAP10a	Os01g0776600	LOC_Os01g56880	phosphate	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	In vivo root 5-bromo-4-chloro-3-indolyl-phosphate (BCIP) assays and activity measurements on external media showed that OsPAP10a is a root-associated APase
OsPAP10c	Os12g0637100	LOC_Os12g44020	Pi	OsPAP10c, a novel secreted acid phosphatase in rice, plays an important role in the utilization of external organic phosphorus.	Both the transcript and protein levels of OsPAP10c are strongly induced by Pi starvation
OsPAP10c	Os12g0637100	LOC_Os12g44020	Pi	OsPAP10c, a novel secreted acid phosphatase in rice, plays an important role in the utilization of external organic phosphorus.	OsPAP10c overexpression increased acid phosphatase (APase) activity by more than 10-fold in the culture media and almost fivefold in both roots and leaves under Pi -sufficient and Pi -deficient conditions
OsPAP10c	Os12g0637100	LOC_Os12g44020	pi	OsPAP10c, a novel secreted acid phosphatase in rice, plays an important role in the utilization of external organic phosphorus.	Both the transcript and protein levels of OsPAP10c are strongly induced by Pi starvation
OsPAP10c	Os12g0637100	LOC_Os12g44020	pi	OsPAP10c, a novel secreted acid phosphatase in rice, plays an important role in the utilization of external organic phosphorus.	OsPAP10c overexpression increased acid phosphatase (APase) activity by more than 10-fold in the culture media and almost fivefold in both roots and leaves under Pi -sufficient and Pi -deficient conditions
OsPAP10c	Os12g0637100	LOC_Os12g44020	Ubiquitin	Purple acid phosphatase 10c (OsPAP10c) encodes a major acid phosphatase and regulates the plant growth under phosphate deficient condition in rice.	Two constructs were used to generate the OsPAP10c overexpression plants, by driving the OsPAP10c coding sequence with ubiquitin promoter (UP) or the OsPAP10c-native promoter (NP), respectively
OsPAP2	Os09g0506000	LOC_Os09g32840	phosphate	Molecular characterization of OsPAP2: transgenic expression of a purple acid phosphatase up-regulated in phosphate-deprived rice suspension cells	OsPAP2 expression is up-regulated in the rice plant and in cell cultures in the absence of phosphate (P( i ))
OsPAP2	Os09g0506000	LOC_Os09g32840	phosphate	Molecular characterization of OsPAP2: transgenic expression of a purple acid phosphatase up-regulated in phosphate-deprived rice suspension cells	Molecular characterization of OsPAP2: transgenic expression of a purple acid phosphatase up-regulated in phosphate-deprived rice suspension cells
OsPAP2	Os09g0506000	LOC_Os09g32840	insect	Molecular characterization of OsPAP2: transgenic expression of a purple acid phosphatase up-regulated in phosphate-deprived rice suspension cells	The OsPAP2 cDNA was expressed as a 69 kDa polypeptide in baculovirus-infected insect Sf9 cells
OsPAP2	Os09g0506000	LOC_Os09g32840	root	Molecular characterization of OsPAP2: transgenic expression of a purple acid phosphatase up-regulated in phosphate-deprived rice suspension cells	OsPAP2 expression was responsive to the level of P( i )-supply, and transcripts of OsPAP2 were abundant in P( i )-deprived roots
OsPAP21b	Os11g0151700	LOC_Os11g05400	temperature	Improvement of Phosphate Acquisition and Utilization by a Secretory Purple Acid Phosphatase (OsPAP21b) in Rice.	Biochemically, OsPAP21b showed hydrolysis of several organophosphates at acidic pH and possessed sufficient thermostability befitting for high temperature rice ecosystems with acidic soils
OsPAP21b	Os11g0151700	LOC_Os11g05400	Pi	Improvement of Phosphate Acquisition and Utilization by a Secretory Purple Acid Phosphatase (OsPAP21b) in Rice.	Interestingly, OsPAP21b was revealed to be a secretory PAP and encodes a distinguishable major APase (acid phosphatase) isoform under low Pi in roots
OsPAP21b	Os11g0151700	LOC_Os11g05400	Pi	Improvement of Phosphate Acquisition and Utilization by a Secretory Purple Acid Phosphatase (OsPAP21b) in Rice.	In light of these evidences, present study strongly proposes OsPAP21b as a useful candidate for improving Pi acquisition and utilization in rice
OsPAP21b	Os11g0151700	LOC_Os11g05400	pi	Improvement of Phosphate Acquisition and Utilization by a Secretory Purple Acid Phosphatase (OsPAP21b) in Rice.	Interestingly, OsPAP21b was revealed to be a secretory PAP and encodes a distinguishable major APase (acid phosphatase) isoform under low Pi in roots
OsPAP21b	Os11g0151700	LOC_Os11g05400	pi	Improvement of Phosphate Acquisition and Utilization by a Secretory Purple Acid Phosphatase (OsPAP21b) in Rice.	In light of these evidences, present study strongly proposes OsPAP21b as a useful candidate for improving Pi acquisition and utilization in rice
OsPAPST1	Os01g0265200	LOC_Os01g16040	chloroplast	Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice	OsPAPST1 is highly expressed in young leaves and roots, while the expression is reduced in mature leaves, in line with the recovery of chloroplast development seen in the older leaves of papst1 mutant plants
OsPAPST1	Os01g0265200	LOC_Os01g16040	chloroplast	Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice	OsPAPST1 is located on the outer mitochondrial membrane and chloroplast envelope
OsPAPST1	Os01g0265200	LOC_Os01g16040	root	Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice	OsPAPST1 is highly expressed in young leaves and roots, while the expression is reduced in mature leaves, in line with the recovery of chloroplast development seen in the older leaves of papst1 mutant plants
OsPAPST1	Os01g0265200	LOC_Os01g16040	mitochondria	Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice	OsPAPST1 is located on the outer mitochondrial membrane and chloroplast envelope
OsPARP3	Os02g0530600	LOC_Os02g32860	DNA repair	Linear Energy Transfer-Dependent Change in Rice Gene Expression Profile after Heavy-Ion Beam Irradiation.	Of the LET-dependent up-regulated genes, OsPARP3 and OsPCNA were identified, which are involved in DNA repair pathways
OsPBL1	Os02g0513000	LOC_Os02g30900	growth	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	Moreover, we show here that OsPBL1 transcripts are abundantly expressed in the leaves of Dongjin seedlings—an RSV-resistant—under normal growth conditions
OsPBL1	Os02g0513000	LOC_Os02g30900	resistance	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease
OsPBL1	Os02g0513000	LOC_Os02g30900	resistance	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	In this study, we identified the serine/threonine protein kinase OsPBL1 ( O RYZA S ATIVA ARABIDOPSIS PB S1-L IKE 1), a potential resistance gene to rice stripe disease, by reverse genetic screening with T-DNA insertional mutant lines
OsPBL1	Os02g0513000	LOC_Os02g30900	defense	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	We propose that OsPBL1 is involved in antiviral defense signaling pathways in rice
OsPBL1	Os02g0513000	LOC_Os02g30900	cytokinin	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	Exogenous treatment with defense-related phytohormones such as cytokinin and salicylic acid increased the expression of OsPBL1
OsPBL1	Os02g0513000	LOC_Os02g30900	disease	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease
OsPBL1	Os02g0513000	LOC_Os02g30900	salicylic acid	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	Exogenous treatment with defense-related phytohormones such as cytokinin and salicylic acid increased the expression of OsPBL1
OsPBL1	Os02g0513000	LOC_Os02g30900	nucleus	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	The OsPBL1 protein was found to localize to the nucleus and to be cleaved upon attack with either healthy or infected SBPHs
OsPBL1	Os02g0513000	LOC_Os02g30900	immunity	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	Specifically, OsPBL1 exhibits 67 % amino acid sequence identity to AtPBS1 (AVRPPHB SUSCEPTIBLE1), a positive regulator of effector-triggered immunity (ETI) in Arabidopsis
OsPBL1	Os02g0513000	LOC_Os02g30900	Kinase	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease
OsPBL1	Os02g0513000	LOC_Os02g30900	Kinase	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	In this study, we identified the serine/threonine protein kinase OsPBL1 ( O RYZA S ATIVA ARABIDOPSIS PB S1-L IKE 1), a potential resistance gene to rice stripe disease, by reverse genetic screening with T-DNA insertional mutant lines
OsPBL1	Os02g0513000	LOC_Os02g30900	protein kinase	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease
OsPBL1	Os02g0513000	LOC_Os02g30900	protein kinase	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	In this study, we identified the serine/threonine protein kinase OsPBL1 ( O RYZA S ATIVA ARABIDOPSIS PB S1-L IKE 1), a potential resistance gene to rice stripe disease, by reverse genetic screening with T-DNA insertional mutant lines
OsPBL1	Os02g0513000	LOC_Os02g30900	RSV	The rice serine/threonine protein kinase OsPBL1 (ORYZA SATIVA ARABIDOPSIS PBS1 -LIKE 1) is potentially involved in resistance to rice stripe disease	Taken together, our data indicate that OsPBL1 undergoes various transcriptional and post-translational modifications upon SBPH and/or RSV attack, similar to Arabidopsis PBS1
OsPCBP	Os11g0689300	LOC_Os11g46230	pollen	A Calmodulin-Binding Protein from Rice is Essential to Pollen Development	A pollen-expressed gene from rice, OsPCBP, that was previously cloned and identified encodes a novel calmodulin-binding protein
OsPCBP	Os11g0689300	LOC_Os11g46230	pollen	A Calmodulin-Binding Protein from Rice is Essential to Pollen Development	Our experimental results provide convincing evidence that OsPCBP protein plays an important role during the late stage of pollen development
OsPCBP	Os11g0689300	LOC_Os11g46230	microspore	A Calmodulin-Binding Protein from Rice is Essential to Pollen Development	Cytological observations at different stages revealed that microspores from the OsPCBP double-stranded RNA interference plants developed normally until the binucleate stage, but about half were later aborted
OsPCBP	Os11g0689300	LOC_Os11g46230	anther	A Calmodulin-Binding Protein from Rice is Essential to Pollen Development	Overexpression of OsPCBP in transgenic rice plants did not lead to phenotypic changes but did delay anther formation by about 1 week
OspCKII	Os03g0763000	LOC_Os03g55490	phosphate	Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).	OspCKII activity shows the characteristic features of casein kinase II, such as the utilization of GTP as phosphate donor, inhibition by low concentrations of heparin and poly-lysine, and utilization of the canonical pCKII motif E-S-E-G-E in the model substrate RNP29
OspCKII	Os03g0763000	LOC_Os03g55490	Kinase	Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).	Transient expression of GFP fused to the 184 N-terminal amino acids of the OspCKII sequence in rice confirmed the chloroplastic localization of the kinase
OspCKII	Os03g0763000	LOC_Os03g55490	Kinase	Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).	OspCKII activity shows the characteristic features of casein kinase II, such as the utilization of GTP as phosphate donor, inhibition by low concentrations of heparin and poly-lysine, and utilization of the canonical pCKII motif E-S-E-G-E in the model substrate RNP29
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	meristem	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	Northern and Western blotting analysis revealed that OsPCNA and OsFEN-1 were present in meristematic tissues such as cultured cells, shoot apical meristem and root apical meristem
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	shoot	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	Northern and Western blotting analysis revealed that OsPCNA and OsFEN-1 were present in meristematic tissues such as cultured cells, shoot apical meristem and root apical meristem
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	root apical meristem	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	Northern and Western blotting analysis revealed that OsPCNA and OsFEN-1 were present in meristematic tissues such as cultured cells, shoot apical meristem and root apical meristem
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	root	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	Northern and Western blotting analysis revealed that OsPCNA and OsFEN-1 were present in meristematic tissues such as cultured cells, shoot apical meristem and root apical meristem
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	meiotic	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	The distribution patterns of plant PCNA and FEN-1 in meiotic cell progression were investigated using microsporocytes of lily (Lilium longiflorum cv
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	meiotic	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	The roles of OsPCNA and OsFEN-1 in mitotic and meiotic cell cycles are discussed
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	meiotic	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	cell cycle	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	The biochemical and cell cycle-dependent properties of proliferating cell nuclear antigen (OsPCNA) and flap endonuclease-1 (OsFEN-1) were characterized from rice (Oryza sativa)
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	cell cycle	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	The roles of OsPCNA and OsFEN-1 in mitotic and meiotic cell cycles are discussed
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	cell cycle	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	shoot apical meristem	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	Northern and Western blotting analysis revealed that OsPCNA and OsFEN-1 were present in meristematic tissues such as cultured cells, shoot apical meristem and root apical meristem
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	meiotic	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	The roles of OsPCNA and OsFEN-1 in mitotic and meiotic cell cycles are discussed
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	cell cycle	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	The biochemical and cell cycle-dependent properties of proliferating cell nuclear antigen (OsPCNA) and flap endonuclease-1 (OsFEN-1) were characterized from rice (Oryza sativa)
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	cell cycle	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles	The roles of OsPCNA and OsFEN-1 in mitotic and meiotic cell cycles are discussed
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	meristem	Gene for proliferating-cell nuclear antigen (DNA polymerase 6 auxiliary protein) is present in both mammalian and higher plant genomes	Immunohistochemical analysis revealed the presence of an immunoreactive PCNA/cyclin protein in the nuclei of cells in the meristem of soybean root tips
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	root	Gene for proliferating-cell nuclear antigen (DNA polymerase 6 auxiliary protein) is present in both mammalian and higher plant genomes	Immunoblot analysis of the soluble extract of soybean root tips with monospecific anti-PCNA/cyclin identified an immunoreactive protein with an apparent Mr of 34,000
OsPCNA|PCNA	Os02g0805200	LOC_Os02g56130	root	Gene for proliferating-cell nuclear antigen (DNA polymerase 6 auxiliary protein) is present in both mammalian and higher plant genomes	Immunohistochemical analysis revealed the presence of an immunoreactive PCNA/cyclin protein in the nuclei of cells in the meristem of soybean root tips
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	cadmium	Rice PCR1 influences grain weight and Zn accumulation in grains.	Furthermore, the grains of OsPCR1-knockdown lines exhibited substantially higher Zn and lower cadmium (Cd) concentrations than the control, as did yeast heterologously expressing OsPCR1
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	resistance	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	The OsFWL5-overexpresing plants show activated flg22-induced reactive oxygen species (ROS) generation, and increased resistance to Xoo, indicating that OsFWL5 functions to increase pathogen-associated molecular pattern (PAMP)-triggered immunity in rice
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	resistance	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	Furthermore, Cd can induce rice resistance to Xoo, and OsFWL5 is required for Cd-induced rice defense response
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	resistance	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	Putting our finds and previous work together, OsFWL5 could be a candiate gene for breeders to genetically improve rice resistance and grain quality
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	grain	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	Putting our finds and previous work together, OsFWL5 could be a candiate gene for breeders to genetically improve rice resistance and grain quality
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	defense	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	Here, we validated that one of rice FWL genes OsFWL5 plays a positive role in defense to Xanthomonas oryzae pv
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	defense	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	Furthermore, Cd can induce rice resistance to Xoo, and OsFWL5 is required for Cd-induced rice defense response
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	defense response	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	Furthermore, Cd can induce rice resistance to Xoo, and OsFWL5 is required for Cd-induced rice defense response
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	cell death	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	Overexpresion of OsFWL5 promotes H2O2 accumulation and cell death
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	immunity	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	The OsFWL5-overexpresing plants show activated flg22-induced reactive oxygen species (ROS) generation, and increased resistance to Xoo, indicating that OsFWL5 functions to increase pathogen-associated molecular pattern (PAMP)-triggered immunity in rice
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	quality	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	Putting our finds and previous work together, OsFWL5 could be a candiate gene for breeders to genetically improve rice resistance and grain quality
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	reactive oxygen species	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	The OsFWL5-overexpresing plants show activated flg22-induced reactive oxygen species (ROS) generation, and increased resistance to Xoo, indicating that OsFWL5 functions to increase pathogen-associated molecular pattern (PAMP)-triggered immunity in rice
OsPCR1|OsFWL5	Os10g0112100	LOC_Os10g02300	grain quality	Overexpression a &quot;fruit-weight 2.2-like&quot; gene OsFWL5 improves rice resistance.	Putting our finds and previous work together, OsFWL5 could be a candiate gene for breeders to genetically improve rice resistance and grain quality
OsPCS1	Os05g0415200	LOC_Os05g34290	stress	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.	Analysis of the transgenic rice lines grown under metal(loid) stress revealed almost complete absence of both OsPCS1 and OsPCS2 transcripts in the developing seeds coupled with the significant reduction in the content of Cd (~51%) and As (~35%) in grains compared with the non-transgenic plant
OsPCS1	Os05g0415200	LOC_Os05g34290	map-based cloning	Phytochelatin synthase OsPCS1 plays a crucial role in reducing arsenic levels in rice grains.	Map-based cloning identified the responsible genes as OsABCC1 in has1 and OsPCS1 in has2
OsPCS1	Os05g0415200	LOC_Os05g34290	cadmium	Phytochelatin synthase OsPCS1 plays a crucial role in reducing arsenic levels in rice grains.	In vitro phytochelatin synthesis assay indicated that OsPCS1 was more sensitive to activation by As than by cadmium, whereas OsPCS2 was more weakly activated by As than by cadmium
OsPCS1	Os05g0415200	LOC_Os05g34290	node	Phytochelatin synthase OsPCS1 plays a crucial role in reducing arsenic levels in rice grains.	The levels of As in grains and node I were similar between the two mutants, suggesting that OsABCC1 preferentially cooperates with OsPCS1 to sequester As, although rice has another phytochelatin synthase, OsPCS2
OsPCS1	Os05g0415200	LOC_Os05g34290	seedlings	Phytochelatin synthase has contrasting effects on cadmium and arsenic accumulation in rice grains.	Quantitative RT-PCR of each OsPCS transcript in rice seedlings suggested that expression of OsPCS1full, the longest OsPCS1 variant, was most abundant, followed by OsPCS2
OsPCS1	Os05g0415200	LOC_Os05g34290	tolerance	Phytochelatin synthase has contrasting effects on cadmium and arsenic accumulation in rice grains.	To address physiological functions in toxic element tolerance and accumulation, two independent OsPCS1 mutant rice lines (a T-DNA and a Tos17 insertion line) were identified
OsPCS1	Os05g0415200	LOC_Os05g34290	tolerance	Phytochelatin synthase has contrasting effects on cadmium and arsenic accumulation in rice grains.	The OsPCS1 mutants exhibited increased sensitivity to As(III) and Cd in hydroponic experiments, showing the importance of OsPCS1-dependent PC synthesis for rice As(III) and Cd tolerance
OsPCS1	Os05g0415200	LOC_Os05g34290	cadmium	Phytochelatin synthase has contrasting effects on cadmium and arsenic accumulation in rice grains.	Using rice as a cereal model, we examined physiological roles of OsPCS1 in the distribution and detoxification of arsenic (As) and cadmium (Cd), two toxic elements associated with major food safety concerns
OsPCS1	Os05g0415200	LOC_Os05g34290	cadmium	Domain exchange between Oryza sativa phytochelatin synthases reveals a region that determines responsiveness to arsenic and heavy metals.	) has two PCSs (OsPCS1 and OsPCS2), and we previously revealed that OsPCS1 has a higher responsiveness to arsenic than to cadmium, while OsPCS2 has a higher responsiveness to cadmium than to arsenic
OsPCS1	Os05g0415200	LOC_Os05g34290	arsenite	Domain exchange between Oryza sativa phytochelatin synthases reveals a region that determines responsiveness to arsenic and heavy metals.	A chimeric protein in which the 183<U+00A0>C-terminal amino acids of OsPCS2 were replaced with the 185<U+00A0>C-terminal amino acids of OsPCS1 showed higher responsiveness to arsenite than to cadmium, similar to OsPCS1
OsPCS2	Os06g0102300	LOC_Os06g01260	tolerance	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.	The OsPCS2 exhibits root- and shoot-specific differential ratios of alternatively spliced transcripts in indica rice under Cd stress, and plays role in Cd and As stress tolerance and accumulation
OsPCS2	Os06g0102300	LOC_Os06g01260	stress	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.	The OsPCS2 exhibits root- and shoot-specific differential ratios of alternatively spliced transcripts in indica rice under Cd stress, and plays role in Cd and As stress tolerance and accumulation
OsPCS2	Os06g0102300	LOC_Os06g01260	stress	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.	Analysis of the transgenic rice lines grown under metal(loid) stress revealed almost complete absence of both OsPCS1 and OsPCS2 transcripts in the developing seeds coupled with the significant reduction in the content of Cd (~51%) and As (~35%) in grains compared with the non-transgenic plant
OsPCS2	Os06g0102300	LOC_Os06g01260	stress	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.	Taken together, the findings indicate towards a crucial role played by the tissue-specific alternative splicing and relative abundance of the OsPCS2 gene during heavy metal(loid) stress mitigation in rice plant
OsPCS2	Os06g0102300	LOC_Os06g01260	cadmium	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.
OsPCS2	Os06g0102300	LOC_Os06g01260	stress tolerance	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.	The OsPCS2 exhibits root- and shoot-specific differential ratios of alternatively spliced transcripts in indica rice under Cd stress, and plays role in Cd and As stress tolerance and accumulation
OsPCS2	Os06g0102300	LOC_Os06g01260	cadmium	Domain exchange between Oryza sativa phytochelatin synthases reveals a region that determines responsiveness to arsenic and heavy metals.	) has two PCSs (OsPCS1 and OsPCS2), and we previously revealed that OsPCS1 has a higher responsiveness to arsenic than to cadmium, while OsPCS2 has a higher responsiveness to cadmium than to arsenic
OsPCS2	Os06g0102300	LOC_Os06g01260	arsenite	Domain exchange between Oryza sativa phytochelatin synthases reveals a region that determines responsiveness to arsenic and heavy metals.	A chimeric protein in which the 183<U+00A0>C-terminal amino acids of OsPCS2 were replaced with the 185<U+00A0>C-terminal amino acids of OsPCS1 showed higher responsiveness to arsenite than to cadmium, similar to OsPCS1
OsPDC1	Os05g0469600	LOC_Os05g39310	seedling	Production and phenotypic analysis of rice transgenics with altered levels of pyruvate decarboxylase and alcohol dehydrogenase proteins	The fact that levels of Pdc beta-subunit were particularly high in pUH-sPdc1 (plasmid construct designed for over-expression of Ospdc1) seedlings while levels of beta-subunit levels were negligible or lower in pUH-asPdc1 (plasmid construct designed for under-expression of Ospdc1) seedlings also support these observations
OsPDCD5	Os05g0547850	LOC_Os05g47446	pollen	Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice	Here we report that decreased expression of OsPDCD5 caused by antisense technology could induce pollen sterility in photoperiod-sensitive rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	flower	Overexpression of the OsPDCD5 gene induces programmed cell death in rice	Constitutive expression of OsPDCD5 from the cauliflower mosaic virus (CaMV) 35S promoter induced programmed cell death (PCD) in transgenic rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	sterility	Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice	Here we report that decreased expression of OsPDCD5 caused by antisense technology could induce pollen sterility in photoperiod-sensitive rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	sterility	Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice	Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	fertility	Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice	In F1 hybrids made from transgenic plants with antisense-OsPDCD5 and japonica rice varieties, lower transcript inhibition could restore fertility, under certain photoperiod and temperatures
OsPDCD5	Os05g0547850	LOC_Os05g47446	temperature	Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice	In F1 hybrids made from transgenic plants with antisense-OsPDCD5 and japonica rice varieties, lower transcript inhibition could restore fertility, under certain photoperiod and temperatures
OsPDCD5	Os05g0547850	LOC_Os05g47446	cell death	Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice	OsPDCD5, is an ortholog to mammalian programmed cell death 5 gene
OsPDCD5	Os05g0547850	LOC_Os05g47446	cell death	Overexpression of the OsPDCD5 gene induces programmed cell death in rice	) programmed cell death 5 (OsPDCD5) gene in rice plant
OsPDCD5	Os05g0547850	LOC_Os05g47446	cell death	Overexpression of the OsPDCD5 gene induces programmed cell death in rice	Constitutive expression of OsPDCD5 from the cauliflower mosaic virus (CaMV) 35S promoter induced programmed cell death (PCD) in transgenic rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	cell death	Overexpression of the OsPDCD5 gene induces programmed cell death in rice	Overexpression of the OsPDCD5 gene induces programmed cell death in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	auxin	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Transcriptome analysis showed that OsPDCD5 knockout affected auxin biosynthesis, as well as the gibberellin and cytokinin biosynthesis and signaling pathways
OsPDCD5	Os05g0547850	LOC_Os05g47446	panicle	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape
OsPDCD5	Os05g0547850	LOC_Os05g47446	grain	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 negatively regulates plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	grain	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape
OsPDCD5	Os05g0547850	LOC_Os05g47446	grain	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	quality	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Collectively, these findings demonstrate that OsPDCD5 is a promising candidate gene for breeding super rice cultivars with increased yield potential and superior quality
OsPDCD5	Os05g0547850	LOC_Os05g47446	gibberellin	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Transcriptome analysis showed that OsPDCD5 knockout affected auxin biosynthesis, as well as the gibberellin and cytokinin biosynthesis and signaling pathways
OsPDCD5	Os05g0547850	LOC_Os05g47446	grain yield	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 negatively regulates plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	grain yield	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape
OsPDCD5	Os05g0547850	LOC_Os05g47446	grain yield	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	yield	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 negatively regulates plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	yield	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape
OsPDCD5	Os05g0547850	LOC_Os05g47446	yield	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	yield	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Collectively, these findings demonstrate that OsPDCD5 is a promising candidate gene for breeding super rice cultivars with increased yield potential and superior quality
OsPDCD5	Os05g0547850	LOC_Os05g47446	cytokinin	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Transcriptome analysis showed that OsPDCD5 knockout affected auxin biosynthesis, as well as the gibberellin and cytokinin biosynthesis and signaling pathways
OsPDCD5	Os05g0547850	LOC_Os05g47446	architecture	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 negatively regulates plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	architecture	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape
OsPDCD5	Os05g0547850	LOC_Os05g47446	architecture	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	breeding	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Collectively, these findings demonstrate that OsPDCD5 is a promising candidate gene for breeding super rice cultivars with increased yield potential and superior quality
OsPDCD5	Os05g0547850	LOC_Os05g47446	height	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape
OsPDCD5	Os05g0547850	LOC_Os05g47446	plant height	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape
OsPDCD5	Os05g0547850	LOC_Os05g47446	Gibberellin	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Transcriptome analysis showed that OsPDCD5 knockout affected auxin biosynthesis, as well as the gibberellin and cytokinin biosynthesis and signaling pathways
OsPDCD5	Os05g0547850	LOC_Os05g47446	plant architecture	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 negatively regulates plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	plant architecture	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape
OsPDCD5	Os05g0547850	LOC_Os05g47446	plant architecture	OsPDCD5 negatively regulates plant architecture and grain yield in rice	OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice
OsPDCD5	Os05g0547850	LOC_Os05g47446	auxin biosynthesis	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Transcriptome analysis showed that OsPDCD5 knockout affected auxin biosynthesis, as well as the gibberellin and cytokinin biosynthesis and signaling pathways
OsPDCD5	Os05g0547850	LOC_Os05g47446	grain shape	OsPDCD5 negatively regulates plant architecture and grain yield in rice	Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape
OsPDF1A	Os01g0555800	LOC_Os01g37510	chloroplast	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	Transient expression of PDF-green fluorescent protein (GFP) fusion proteins in the protoplasts demonstrates that, unlike OsPDF1A, OsPDF1B is localized in both the chloroplasts and the mitochondria
OsPDF1A	Os01g0555800	LOC_Os01g37510	mitochondria	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	Transient expression of PDF-green fluorescent protein (GFP) fusion proteins in the protoplasts demonstrates that, unlike OsPDF1A, OsPDF1B is localized in both the chloroplasts and the mitochondria
OsPDF1A	Os01g0555800	LOC_Os01g37510	root	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	OsPDF1A is more strongly expressed in the roots, while OsPDF1B is expressed at higher levels in mature leaves
OsPDF1B	Os01g0637600	LOC_Os01g45070	root	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	OsPDF1A is more strongly expressed in the roots, while OsPDF1B is expressed at higher levels in mature leaves
OsPDF1B	Os01g0637600	LOC_Os01g45070	chloroplast	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	Transient expression of PDF-green fluorescent protein (GFP) fusion proteins in the protoplasts demonstrates that, unlike OsPDF1A, OsPDF1B is localized in both the chloroplasts and the mitochondria
OsPDF1B	Os01g0637600	LOC_Os01g45070	chloroplast	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	Based on these results, we conclude that OsPDF1B is essential for the development of chloroplast and perhaps mitochondria
OsPDF1B	Os01g0637600	LOC_Os01g45070	mitochondria	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	Transient expression of PDF-green fluorescent protein (GFP) fusion proteins in the protoplasts demonstrates that, unlike OsPDF1A, OsPDF1B is localized in both the chloroplasts and the mitochondria
OsPDF1B	Os01g0637600	LOC_Os01g45070	mitochondria	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	Based on these results, we conclude that OsPDF1B is essential for the development of chloroplast and perhaps mitochondria
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	seedlings	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	Here, microRNA5144 (osa-miR5144-3p) is reported to mediate the formation of protein disulfide bonds via targeting OsPDIL1;1 mRNA in rice seeds and seedlings during development and under conditions of abiotic stress, respectively
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	resistance	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	These results indicate that protein-disulfide bond formation catalyzed by OsPDIL1;1 is modulated by osa-miR5144-3p in rice during development and is involved in resistance to abiotic stress
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	development	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	Here, microRNA5144 (osa-miR5144-3p) is reported to mediate the formation of protein disulfide bonds via targeting OsPDIL1;1 mRNA in rice seeds and seedlings during development and under conditions of abiotic stress, respectively
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	development	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	These results indicate that protein-disulfide bond formation catalyzed by OsPDIL1;1 is modulated by osa-miR5144-3p in rice during development and is involved in resistance to abiotic stress
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	starch	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	In contrast, the transgenic rice plants overexpressing osa-miR5144-3p or down-expressing OsPDIL1;1 resulted in a lower protein-disulfide bond content; they were susceptible to abiotic stress and produced abnormal grains with small and loosely packed starch granules
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	abiotic stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	Here, microRNA5144 (osa-miR5144-3p) is reported to mediate the formation of protein disulfide bonds via targeting OsPDIL1;1 mRNA in rice seeds and seedlings during development and under conditions of abiotic stress, respectively
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	abiotic stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	Expression of osa-miR5144-3p and OsPDIL1;1 were shown to be inversely regulated in developing organs and under abiotic stress
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	abiotic stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	In contrast, the transgenic rice plants overexpressing osa-miR5144-3p or down-expressing OsPDIL1;1 resulted in a lower protein-disulfide bond content; they were susceptible to abiotic stress and produced abnormal grains with small and loosely packed starch granules
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	abiotic stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	These results indicate that protein-disulfide bond formation catalyzed by OsPDIL1;1 is modulated by osa-miR5144-3p in rice during development and is involved in resistance to abiotic stress
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	Expression of osa-miR5144-3p and OsPDIL1;1 were shown to be inversely regulated in developing organs and under abiotic stress
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	In contrast, the transgenic rice plants overexpressing osa-miR5144-3p or down-expressing OsPDIL1;1 resulted in a lower protein-disulfide bond content; they were susceptible to abiotic stress and produced abnormal grains with small and loosely packed starch granules
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	These results indicate that protein-disulfide bond formation catalyzed by OsPDIL1;1 is modulated by osa-miR5144-3p in rice during development and is involved in resistance to abiotic stress
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	biotic stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	Here, microRNA5144 (osa-miR5144-3p) is reported to mediate the formation of protein disulfide bonds via targeting OsPDIL1;1 mRNA in rice seeds and seedlings during development and under conditions of abiotic stress, respectively
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	biotic stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	Expression of osa-miR5144-3p and OsPDIL1;1 were shown to be inversely regulated in developing organs and under abiotic stress
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	biotic stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	In contrast, the transgenic rice plants overexpressing osa-miR5144-3p or down-expressing OsPDIL1;1 resulted in a lower protein-disulfide bond content; they were susceptible to abiotic stress and produced abnormal grains with small and loosely packed starch granules
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	biotic stress	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	These results indicate that protein-disulfide bond formation catalyzed by OsPDIL1;1 is modulated by osa-miR5144-3p in rice during development and is involved in resistance to abiotic stress
OsPDIL1;1	Os11g0199200	LOC_Os11g09280	R protein	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by microRNA5144-3p in Rice.	In contrast, the transgenic rice plants overexpressing osa-miR5144-3p or down-expressing OsPDIL1;1 resulted in a lower protein-disulfide bond content; they were susceptible to abiotic stress and produced abnormal grains with small and loosely packed starch granules
OsPDK1	Os07g0637300	LOC_Os07g44330	root	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	OsPDK1 was expressed in leaf blade and leaf sheath but not in callus and root, while OsPDK2 was expressed constitutively in all tissues examined
OsPDK1	Os07g0637300	LOC_Os07g44330	growth	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	These results suggest that gibberellin modulates the activity of mtPDC by regulating OsPDK1 expression and subsequently controlling plant growth and development
OsPDK1	Os07g0637300	LOC_Os07g44330	leaf	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	OsPDK1 was expressed in leaf blade and leaf sheath but not in callus and root, while OsPDK2 was expressed constitutively in all tissues examined
OsPDK1	Os07g0637300	LOC_Os07g44330	leaf	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	Maximum expression of OsPDK1 in leaf sheath was detected by Northern blot analysis when seedlings were treated with 5 microM GA3 for 24 h
OsPDK1	Os07g0637300	LOC_Os07g44330	leaf	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	The beta-glucuronidase (GUS) reporter gene, driven by a 2,067 bp OsPDK1 promoter region fragment, was mainly expressed in the aleurone layer of germinating seed and leaf sheath
OsPDK1	Os07g0637300	LOC_Os07g44330	sheath	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	OsPDK1 was expressed in leaf blade and leaf sheath but not in callus and root, while OsPDK2 was expressed constitutively in all tissues examined
OsPDK1	Os07g0637300	LOC_Os07g44330	sheath	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	Maximum expression of OsPDK1 in leaf sheath was detected by Northern blot analysis when seedlings were treated with 5 microM GA3 for 24 h
OsPDK1	Os07g0637300	LOC_Os07g44330	sheath	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	The beta-glucuronidase (GUS) reporter gene, driven by a 2,067 bp OsPDK1 promoter region fragment, was mainly expressed in the aleurone layer of germinating seed and leaf sheath
OsPDK1	Os07g0637300	LOC_Os07g44330	seed	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	Maximum expression of OsPDK1 in leaf sheath was detected by Northern blot analysis when seedlings were treated with 5 microM GA3 for 24 h
OsPDK1	Os07g0637300	LOC_Os07g44330	seed	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	The beta-glucuronidase (GUS) reporter gene, driven by a 2,067 bp OsPDK1 promoter region fragment, was mainly expressed in the aleurone layer of germinating seed and leaf sheath
OsPDK1	Os07g0637300	LOC_Os07g44330	gibberellin	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	OsPDK1 was identified as a gibberellin-up-regulated gene using a cDNA microarray
OsPDK1	Os07g0637300	LOC_Os07g44330	gibberellin	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	These results suggest that gibberellin modulates the activity of mtPDC by regulating OsPDK1 expression and subsequently controlling plant growth and development
OsPDK1	Os07g0637300	LOC_Os07g44330	seedling	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice	Maximum expression of OsPDK1 in leaf sheath was detected by Northern blot analysis when seedlings were treated with 5 microM GA3 for 24 h
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	growth	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	growth	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	In addition, overexpression and mutation of OsPDR1 resulted in decreased and increased plant growth at seedling stage, respectively, but eventually led to decreased grain yield
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	growth	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	3-overexpressing plants exhibited higher JAs content and stronger growth inhibition and disease resistance than OsPDR1
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	resistance	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	resistance	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	By affecting JAs biosynthesis, overexpression of OsPDR1 resulted in constitutive activation of defense-related genes and enhanced resistance to bacterial blight, whereas its mutation decreased pathogen resistance
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	resistance	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	3-overexpressing plants exhibited higher JAs content and stronger growth inhibition and disease resistance than OsPDR1
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	resistance	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	These results indicated that alternative splicing affects the function of OsPDR1 gene in regulation of growth, development and disease resistance
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	development	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	These results indicated that alternative splicing affects the function of OsPDR1 gene in regulation of growth, development and disease resistance
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	grain	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	In addition, overexpression and mutation of OsPDR1 resulted in decreased and increased plant growth at seedling stage, respectively, but eventually led to decreased grain yield
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	seedling	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	In addition, overexpression and mutation of OsPDR1 resulted in decreased and increased plant growth at seedling stage, respectively, but eventually led to decreased grain yield
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	disease	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	3-overexpressing plants exhibited higher JAs content and stronger growth inhibition and disease resistance than OsPDR1
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	disease	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	These results indicated that alternative splicing affects the function of OsPDR1 gene in regulation of growth, development and disease resistance
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	disease resistance	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	3-overexpressing plants exhibited higher JAs content and stronger growth inhibition and disease resistance than OsPDR1
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	disease resistance	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	These results indicated that alternative splicing affects the function of OsPDR1 gene in regulation of growth, development and disease resistance
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	bacterial blight	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	By affecting JAs biosynthesis, overexpression of OsPDR1 resulted in constitutive activation of defense-related genes and enhanced resistance to bacterial blight, whereas its mutation decreased pathogen resistance
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	grain yield	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	In addition, overexpression and mutation of OsPDR1 resulted in decreased and increased plant growth at seedling stage, respectively, but eventually led to decreased grain yield
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	yield	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	In addition, overexpression and mutation of OsPDR1 resulted in decreased and increased plant growth at seedling stage, respectively, but eventually led to decreased grain yield
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	pathogen	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	pathogen	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	By affecting JAs biosynthesis, overexpression of OsPDR1 resulted in constitutive activation of defense-related genes and enhanced resistance to bacterial blight, whereas its mutation decreased pathogen resistance
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	pathogen	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	The three OsPDR1 transcripts are developmentally controlled and differentially regulated by JAs and pathogen infection
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	transporter	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	plant growth	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	plant growth	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	In addition, overexpression and mutation of OsPDR1 resulted in decreased and increased plant growth at seedling stage, respectively, but eventually led to decreased grain yield
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	pathogen resistance	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice
OsPDR1|OsABCG45	Os08g0544400	LOC_Os08g43120	pathogen resistance	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice	By affecting JAs biosynthesis, overexpression of OsPDR1 resulted in constitutive activation of defense-related genes and enhanced resistance to bacterial blight, whereas its mutation decreased pathogen resistance
OsPDR2	Os02g0528900	LOC_Os02g32690	growth	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	OsPDR2 showed variable levels of relative expression pattern in vegetative and/or reproductive tissues analyzed at different stages of growth and development (5-17 weeks)
OsPDR2	Os02g0528900	LOC_Os02g32690	development	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.
OsPDR2	Os02g0528900	LOC_Os02g32690	development	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	OsPDR2 showed variable levels of relative expression pattern in vegetative and/or reproductive tissues analyzed at different stages of growth and development (5-17 weeks)
OsPDR2	Os02g0528900	LOC_Os02g32690	development	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	The study revealed significant inhibitory effects of RNAi-mediated suppression of OsPDR2 on the development of root, male reproductive traits, and yield
OsPDR2	Os02g0528900	LOC_Os02g32690	yield	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	The study revealed significant inhibitory effects of RNAi-mediated suppression of OsPDR2 on the development of root, male reproductive traits, and yield
OsPDR2	Os02g0528900	LOC_Os02g32690	vegetative	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	OsPDR2 showed variable levels of relative expression pattern in vegetative and/or reproductive tissues analyzed at different stages of growth and development (5-17 weeks)
OsPDR2	Os02g0528900	LOC_Os02g32690	reproductive	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	OsPDR2 showed variable levels of relative expression pattern in vegetative and/or reproductive tissues analyzed at different stages of growth and development (5-17 weeks)
OsPDR2	Os02g0528900	LOC_Os02g32690	reproductive	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	The study revealed significant inhibitory effects of RNAi-mediated suppression of OsPDR2 on the development of root, male reproductive traits, and yield
OsPDR2	Os02g0528900	LOC_Os02g32690	homeostasis	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.
OsPDR2	Os02g0528900	LOC_Os02g32690	homeostasis	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	Moreover, 32P isotope labeling and split-root experiments under different Pi regime with RNAi lines revealed the function of OsPDR2 in regulating homeostasis of Pi
OsPDR2	Os02g0528900	LOC_Os02g32690	Pi	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.
OsPDR2	Os02g0528900	LOC_Os02g32690	Pi	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	Therefore, qRT-PCR was employed to determine the spatiotemporal effects and the availability of Pi on the expression of OsPDR2
OsPDR2	Os02g0528900	LOC_Os02g32690	Pi	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	Moreover, 32P isotope labeling and split-root experiments under different Pi regime with RNAi lines revealed the function of OsPDR2 in regulating homeostasis of Pi
OsPDR2	Os02g0528900	LOC_Os02g32690	pi	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.
OsPDR2	Os02g0528900	LOC_Os02g32690	pi	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	Therefore, qRT-PCR was employed to determine the spatiotemporal effects and the availability of Pi on the expression of OsPDR2
OsPDR2	Os02g0528900	LOC_Os02g32690	pi	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	Moreover, 32P isotope labeling and split-root experiments under different Pi regime with RNAi lines revealed the function of OsPDR2 in regulating homeostasis of Pi
OsPDR2	Os02g0528900	LOC_Os02g32690	Pi homeostasis	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.
OsPDR6|OsABCG31	Os01g0177900	LOC_Os01g08260	growth	Cuticular Defects in Oryza sativa ATP-binding Cassette Transporter G31 Mutant Plants Cause Dwarfism, Elevated Defense Responses and Pathogen Resistance.	Here we characterize the osabcg31 knockout mutant and hairpin RNA interference (RNAi)-down-regulated OsABCG31 plant lines having reduced plant growth and a permeable cuticle
OsPDR6|OsABCG31	Os01g0177900	LOC_Os01g08260	cell wall	Cuticular Defects in Oryza sativa ATP-binding Cassette Transporter G31 Mutant Plants Cause Dwarfism, Elevated Defense Responses and Pathogen Resistance.	The reduced content of cutin in leaves and structural alterations in the cuticle and at the cuticle-cell wall interface in plants compromised in OsABCG31 expression explain the cuticle permeability
OsPDR6|OsABCG31	Os01g0177900	LOC_Os01g08260	cuticle	Cuticular Defects in Oryza sativa ATP-binding Cassette Transporter G31 Mutant Plants Cause Dwarfism, Elevated Defense Responses and Pathogen Resistance.	Here we characterize the osabcg31 knockout mutant and hairpin RNA interference (RNAi)-down-regulated OsABCG31 plant lines having reduced plant growth and a permeable cuticle
OsPDR6|OsABCG31	Os01g0177900	LOC_Os01g08260	cuticle	Cuticular Defects in Oryza sativa ATP-binding Cassette Transporter G31 Mutant Plants Cause Dwarfism, Elevated Defense Responses and Pathogen Resistance.	The reduced content of cutin in leaves and structural alterations in the cuticle and at the cuticle-cell wall interface in plants compromised in OsABCG31 expression explain the cuticle permeability
OsPDR6|OsABCG31	Os01g0177900	LOC_Os01g08260	cutin	Cuticular Defects in Oryza sativa ATP-binding Cassette Transporter G31 Mutant Plants Cause Dwarfism, Elevated Defense Responses and Pathogen Resistance.	The reduced content of cutin in leaves and structural alterations in the cuticle and at the cuticle-cell wall interface in plants compromised in OsABCG31 expression explain the cuticle permeability
OsPDR6|OsABCG31	Os01g0177900	LOC_Os01g08260	plant growth	Cuticular Defects in Oryza sativa ATP-binding Cassette Transporter G31 Mutant Plants Cause Dwarfism, Elevated Defense Responses and Pathogen Resistance.	Here we characterize the osabcg31 knockout mutant and hairpin RNA interference (RNAi)-down-regulated OsABCG31 plant lines having reduced plant growth and a permeable cuticle
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	salt	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	Hypoxic stress also induced ospdr9 in rice roots, salt stress induced ospdr9 at low levels but cold and heat shock had no effect
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	seedling	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	Polyethylene glycol and the heavy metals Cd (20 microM) and Zn (30 microM) rapidly and markedly induced ospdr9 in roots of rice seedlings
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	jasmonic	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	The plant growth regulator jasmonic acid, the auxin alpha-naphthalene acetic acid and the cytokinin 6-benzylaminopurine triggered ospdr9 expression
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	growth	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	The plant growth regulator jasmonic acid, the auxin alpha-naphthalene acetic acid and the cytokinin 6-benzylaminopurine triggered ospdr9 expression
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	abiotic stress	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	The results suggested that redox changes may be involved in the abiotic stress response regulation of ospdr9 in rice roots
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	ethylene	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	Polyethylene glycol and the heavy metals Cd (20 microM) and Zn (30 microM) rapidly and markedly induced ospdr9 in roots of rice seedlings
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	transporter	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	auxin	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	The plant growth regulator jasmonic acid, the auxin alpha-naphthalene acetic acid and the cytokinin 6-benzylaminopurine triggered ospdr9 expression
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	root	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	Polyethylene glycol and the heavy metals Cd (20 microM) and Zn (30 microM) rapidly and markedly induced ospdr9 in roots of rice seedlings
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	root	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	Hypoxic stress also induced ospdr9 in rice roots, salt stress induced ospdr9 at low levels but cold and heat shock had no effect
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	root	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	The antioxidants dithiothreitol and ascorbic acid rapidly and markedly induced ospdr9 in rice roots; the strong oxidant hydrogen peroxide also induced ospdr9 but at three times lower levels
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	root	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	The results suggested that redox changes may be involved in the abiotic stress response regulation of ospdr9 in rice roots
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	root	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	salt stress	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	Hypoxic stress also induced ospdr9 in rice roots, salt stress induced ospdr9 at low levels but cold and heat shock had no effect
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	cytokinin	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	The plant growth regulator jasmonic acid, the auxin alpha-naphthalene acetic acid and the cytokinin 6-benzylaminopurine triggered ospdr9 expression
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	jasmonic acid	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots	The plant growth regulator jasmonic acid, the auxin alpha-naphthalene acetic acid and the cytokinin 6-benzylaminopurine triggered ospdr9 expression
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	root	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	Furthermore, a spatial expression analysis showed that Cd-induced expression of OsABCG36 was found in both the root tip and mature root region
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	root	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	Immunostaining showed that OsABCG36 was localized in all root cells except the epidermal cells
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	root	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	Knockout of OsABCG36 resulted in increased Cd accumulation in root cell sap, and enhanced Cd sensitivity, but did not affect the tolerance to other metals including Al, Zn, Cu, and Pb
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	root	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	Taken together, our results indicated that OsABCG36 is not involved in Cd accumulation in the shoots, but is required for Cd tolerance by exporting Cd or Cd conjugates from the root cells in rice
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	tolerance	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	The ABC transporter OsABCG36 is required for Cd tolerance in rice.
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	tolerance	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	Knockout of OsABCG36 resulted in increased Cd accumulation in root cell sap, and enhanced Cd sensitivity, but did not affect the tolerance to other metals including Al, Zn, Cu, and Pb
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	tolerance	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	Taken together, our results indicated that OsABCG36 is not involved in Cd accumulation in the shoots, but is required for Cd tolerance by exporting Cd or Cd conjugates from the root cells in rice
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	transporter	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	The ABC transporter OsABCG36 is required for Cd tolerance in rice.
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	plasma membrane	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	Transient expression of OsABCG36 in rice protoplast cells showed that it was localized to the plasma membrane
Ospdr9|OsABCG36	Os01g0609300	LOC_Os01g42380	ABC transporter	The ABC transporter OsABCG36 is required for Cd tolerance in rice.	The ABC transporter OsABCG36 is required for Cd tolerance in rice.
OsPDT1	Os09g0531900	LOC_Os09g36190	pollen	Oryza sativa PECTIN DEFECTIVE TAPETUM1 affects anther development through a pectin-mediated signaling pathway in rice.	 The ospdt1 mutant exhibited premature programmed cell death (PCD) of the tapetum and disordered pollen walls, resulting in aborted pollen grains
OsPDT1	Os09g0531900	LOC_Os09g36190	anther	Oryza sativa PECTIN DEFECTIVE TAPETUM1 affects anther development through a pectin-mediated signaling pathway in rice.	 Pectin distribution in the anther sac was comparable between the mutant and the wild-type, suggesting that the structural pectin was not dramatically affected in ospdt1
OsPDT1	Os09g0531900	LOC_Os09g36190	sterility	Oryza sativa PECTIN DEFECTIVE TAPETUM1 affects anther development through a pectin-mediated signaling pathway in rice.	 These results suggest that the mutation of OsPDT1 does not dramatically affect structural pectin but affects components of the pectin-mediated signaling pathway, such as OsiWAK1, and causes male sterility
OsPDT1	Os09g0531900	LOC_Os09g36190	cell death	Oryza sativa PECTIN DEFECTIVE TAPETUM1 affects anther development through a pectin-mediated signaling pathway in rice.	 The ospdt1 mutant exhibited premature programmed cell death (PCD) of the tapetum and disordered pollen walls, resulting in aborted pollen grains
OsPDT1	Os09g0531900	LOC_Os09g36190	tapetum	Oryza sativa PECTIN DEFECTIVE TAPETUM1 affects anther development through a pectin-mediated signaling pathway in rice.	 The ospdt1 mutant exhibited premature programmed cell death (PCD) of the tapetum and disordered pollen walls, resulting in aborted pollen grains
OsPDT1	Os09g0531900	LOC_Os09g36190	tapetal	Oryza sativa PECTIN DEFECTIVE TAPETUM1 affects anther development through a pectin-mediated signaling pathway in rice.	 OsiWAK1 RNA interference lines exhibited earlier tapetal PCD, similar to ospdt1
OsPDT1	Os09g0531900	LOC_Os09g36190	male sterility	Oryza sativa PECTIN DEFECTIVE TAPETUM1 affects anther development through a pectin-mediated signaling pathway in rice.	 These results suggest that the mutation of OsPDT1 does not dramatically affect structural pectin but affects components of the pectin-mediated signaling pathway, such as OsiWAK1, and causes male sterility
OsPDT1	Os09g0531900	LOC_Os09g36190	pollen wall	Oryza sativa PECTIN DEFECTIVE TAPETUM1 affects anther development through a pectin-mediated signaling pathway in rice.	 The ospdt1 mutant exhibited premature programmed cell death (PCD) of the tapetum and disordered pollen walls, resulting in aborted pollen grains
OsPDT1	Os09g0531900	LOC_Os09g36190	programmed cell death	Oryza sativa PECTIN DEFECTIVE TAPETUM1 affects anther development through a pectin-mediated signaling pathway in rice.	 The ospdt1 mutant exhibited premature programmed cell death (PCD) of the tapetum and disordered pollen walls, resulting in aborted pollen grains
OsPDX1.1	Os07g0100200	LOC_Os07g01020	disease resistance	The bacterial effector AvrRxo1 inhibits vitamin B6 biosynthesis to promote infection in rice	The bacterial effector AvrRxo1 inhibits vitamin B6 biosynthesis to promote infection in rice
OsPDX1.2	Os10g0100700	LOC_Os10g01080	disease resistance	The bacterial effector AvrRxo1 inhibits vitamin B6 biosynthesis to promote infection in rice	The bacterial effector AvrRxo1 inhibits vitamin B6 biosynthesis to promote infection in rice
OsPDX1.3	Os11g0708500	LOC_Os11g48080	disease resistance	The bacterial effector AvrRxo1 inhibits vitamin B6 biosynthesis to promote infection in rice	The bacterial effector AvrRxo1 inhibits vitamin B6 biosynthesis to promote infection in rice
OsPE	Os03g0241300	LOC_Os03g13810	seed	Development of multiple embryos in polyembryonic insertional mutant OsPE of rice	A T-DNA insertional mutant OsPE of rice gives twin and triplet seedlings in up to 20 % of the seeds
OsPE	Os03g0241300	LOC_Os03g13810	seed	Development of multiple embryos in polyembryonic insertional mutant OsPE of rice	Confocal laser scanning microscopic (CLSM) analysis of the developing seeds of OsPE showed multiple embryo development in up to 60 % of the ovules
OsPE	Os03g0241300	LOC_Os03g13810	seed	Development of multiple embryos in polyembryonic insertional mutant OsPE of rice	Key message Multiple seedlings in the OsPE mutant are due to sequential proliferation and cleavage of the zygotic embryos
OsPE	Os03g0241300	LOC_Os03g13810	shoot	The polyembryo gene (OsPE) in rice	RT-PCR showed the expression of OsPE gene in Basmati 370 shoots
OsPE	Os03g0241300	LOC_Os03g13810	seed	The polyembryo gene (OsPE) in rice	, multiple embryos in the seeds in the knockout mutant OsPE whereas its wild-type allele strictly controls single embryo per seed
OsPE	Os03g0241300	LOC_Os03g13810	seedling	Development of multiple embryos in polyembryonic insertional mutant OsPE of rice	A T-DNA insertional mutant OsPE of rice gives twin and triplet seedlings in up to 20 % of the seeds
OsPE	Os03g0241300	LOC_Os03g13810	seedling	Development of multiple embryos in polyembryonic insertional mutant OsPE of rice	Key message Multiple seedlings in the OsPE mutant are due to sequential proliferation and cleavage of the zygotic embryos
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	resistance	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	map-based cloning	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.	Here, we report the map-based cloning of the causal gene OsPELOTA (originally termed splHM47 )
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	salicylic acid	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	blight	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	bacterial blight	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	leaf	LML1, Encoding a Conserved Eukaryotic Release Factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	LML1 is expressed in all types of leaf cells, and encodes a novel eukaryotic release factor 1 (eRF1) protein located in the endoplasmic reticulum (ER)
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	growth	LML1, Encoding a Conserved Eukaryotic Release Factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	LML1 can partially rescue the growth delay phenotype of the LML1 yeast ortholog mutant, dom34
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	growth	LML1, Encoding a Conserved Eukaryotic Release Factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	Both lml1 and mutants of AtLML1 (the LML1 Arabidopsis ortholog) exhibited a growth delay phenotype as dom34
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	resistance	LML1, Encoding a Conserved Eukaryotic Release Factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	The lml1 mutant exhibited abnormal cell death and resistance to both bacterial blight and rice blast
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	blast	LML1, Encoding a Conserved Eukaryotic Release Factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	The lml1 mutant exhibited abnormal cell death and resistance to both bacterial blight and rice blast
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	cell death	LML1, Encoding a Conserved Eukaryotic Release Factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	The lml1 mutant exhibited abnormal cell death and resistance to both bacterial blight and rice blast
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	blight	LML1, Encoding a Conserved Eukaryotic Release Factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	The lml1 mutant exhibited abnormal cell death and resistance to both bacterial blight and rice blast
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	bacterial blight	LML1, Encoding a Conserved Eukaryotic Release Factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	The lml1 mutant exhibited abnormal cell death and resistance to both bacterial blight and rice blast
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	root	A Pelota-like gene regulates root development and defence responses in rice.	The Ospelo mutant showed defects in root system development and spotted leaves at early seedling stages
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	root	A Pelota-like gene regulates root development and defence responses in rice.	These results demonstrate that OsPelo positively regulates root development while its loss of function enhances pathogen resistance by pre-activation of defence responses in rice
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	resistance	A Pelota-like gene regulates root development and defence responses in rice.	Defence responses were induced in the Ospelo mutant, as shown by enhanced resistance to the bacterial pathogen Xanthomonas oryzae pv
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	resistance	A Pelota-like gene regulates root development and defence responses in rice.	Detailed analysis showed that activation of a number of innate immunity-related genes might be responsible for the enhanced disease resistance in the Ospelo mutant
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	resistance	A Pelota-like gene regulates root development and defence responses in rice.	These results demonstrate that OsPelo positively regulates root development while its loss of function enhances pathogen resistance by pre-activation of defence responses in rice
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	seedling	A Pelota-like gene regulates root development and defence responses in rice.	The Ospelo mutant showed defects in root system development and spotted leaves at early seedling stages
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	development	A Pelota-like gene regulates root development and defence responses in rice.	The Ospelo mutant showed defects in root system development and spotted leaves at early seedling stages
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	development	A Pelota-like gene regulates root development and defence responses in rice.	These results demonstrate that OsPelo positively regulates root development while its loss of function enhances pathogen resistance by pre-activation of defence responses in rice
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	mitochondria	A Pelota-like gene regulates root development and defence responses in rice.	OsPelo was found to be expressed in various tissues throughout the plant, and the protein was located in mitochondria
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	root development	A Pelota-like gene regulates root development and defence responses in rice.	These results demonstrate that OsPelo positively regulates root development while its loss of function enhances pathogen resistance by pre-activation of defence responses in rice
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	disease	A Pelota-like gene regulates root development and defence responses in rice.	Detailed analysis showed that activation of a number of innate immunity-related genes might be responsible for the enhanced disease resistance in the Ospelo mutant
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	disease resistance	A Pelota-like gene regulates root development and defence responses in rice.	Detailed analysis showed that activation of a number of innate immunity-related genes might be responsible for the enhanced disease resistance in the Ospelo mutant
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	stress	A Pelota-like gene regulates root development and defence responses in rice.	In addition, whole-genome transcriptome analysis showed that OsPelo was significantly associated with a number of biological processes, including translation, metabolism and biotic stress response
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	biotic stress	A Pelota-like gene regulates root development and defence responses in rice.	In addition, whole-genome transcriptome analysis showed that OsPelo was significantly associated with a number of biological processes, including translation, metabolism and biotic stress response
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	innate immunity	A Pelota-like gene regulates root development and defence responses in rice.	Detailed analysis showed that activation of a number of innate immunity-related genes might be responsible for the enhanced disease resistance in the Ospelo mutant
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	pathogen	A Pelota-like gene regulates root development and defence responses in rice.	Defence responses were induced in the Ospelo mutant, as shown by enhanced resistance to the bacterial pathogen Xanthomonas oryzae pv
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	pathogen	A Pelota-like gene regulates root development and defence responses in rice.	These results demonstrate that OsPelo positively regulates root development while its loss of function enhances pathogen resistance by pre-activation of defence responses in rice
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	stress response	A Pelota-like gene regulates root development and defence responses in rice.	In addition, whole-genome transcriptome analysis showed that OsPelo was significantly associated with a number of biological processes, including translation, metabolism and biotic stress response
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	defence	A Pelota-like gene regulates root development and defence responses in rice.	Defence responses were induced in the Ospelo mutant, as shown by enhanced resistance to the bacterial pathogen Xanthomonas oryzae pv
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	defence	A Pelota-like gene regulates root development and defence responses in rice.	These results demonstrate that OsPelo positively regulates root development while its loss of function enhances pathogen resistance by pre-activation of defence responses in rice
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	defence response	A Pelota-like gene regulates root development and defence responses in rice.	Defence responses were induced in the Ospelo mutant, as shown by enhanced resistance to the bacterial pathogen Xanthomonas oryzae pv
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	defence response	A Pelota-like gene regulates root development and defence responses in rice.	These results demonstrate that OsPelo positively regulates root development while its loss of function enhances pathogen resistance by pre-activation of defence responses in rice
OsPELOTA|LML1|Ospelo	Os04g0659900	LOC_Os04g56480	pathogen resistance	A Pelota-like gene regulates root development and defence responses in rice.	These results demonstrate that OsPelo positively regulates root development while its loss of function enhances pathogen resistance by pre-activation of defence responses in rice
OsPEP1	None	LOC_Os11g09560	root	Root-secreted peptide OsPEP1 regulates primary root elongation in rice	Root-secreted peptide OsPEP1 regulates primary root elongation in rice
OsPEP1	None	LOC_Os11g09560	root	Root-secreted peptide OsPEP1 regulates primary root elongation in rice	OsPEP1 was expressed highly in root tissues, especially root cap cells and epidermal cells in the root maturation zone
OsPEP1	None	LOC_Os11g09560	root	Root-secreted peptide OsPEP1 regulates primary root elongation in rice	Notably, OsPEP1 RNA interference (RNAi) lines had short primary roots with small meristems and short cells in the root elongation zone; furthermore, the short root phenotype of OsPEP1 RNAi plants could be rescued by exogenous application of PEP1
OsPEP1	None	LOC_Os11g09560	root elongation	Root-secreted peptide OsPEP1 regulates primary root elongation in rice	Root-secreted peptide OsPEP1 regulates primary root elongation in rice
OsPEP1	None	LOC_Os11g09560	root elongation	Root-secreted peptide OsPEP1 regulates primary root elongation in rice	Notably, OsPEP1 RNA interference (RNAi) lines had short primary roots with small meristems and short cells in the root elongation zone; furthermore, the short root phenotype of OsPEP1 RNAi plants could be rescued by exogenous application of PEP1
OsPEP1	None	LOC_Os11g09560	primary root	Root-secreted peptide OsPEP1 regulates primary root elongation in rice	Root-secreted peptide OsPEP1 regulates primary root elongation in rice
OsPEP1	None	LOC_Os11g09560	primary root	Root-secreted peptide OsPEP1 regulates primary root elongation in rice	Notably, OsPEP1 RNA interference (RNAi) lines had short primary roots with small meristems and short cells in the root elongation zone; furthermore, the short root phenotype of OsPEP1 RNAi plants could be rescued by exogenous application of PEP1
OsPEX1	Os11g0657400	LOC_Os11g43640	growth	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Rice leucine-rich repeat extensin-like protein OsPEX1 mediates the intersection of lignin deposition and plant growth
OsPEX1	Os11g0657400	LOC_Os11g43640	resistance	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	When OsPEX1 was ectopically expressed in rice cultivars with tall stature that lacks the allele of semi-dwarf 1, well-known green revolution gene, the resulting transgenic plants displayed reduced height and enhanced lodging resistance
OsPEX1	Os11g0657400	LOC_Os11g43640	resistance	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Lastly, we demonstrated that modulating OsPEX1 expression could provide a tool for improving rice lodging resistance
OsPEX1	Os11g0657400	LOC_Os11g43640	lodging	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	When OsPEX1 was ectopically expressed in rice cultivars with tall stature that lacks the allele of semi-dwarf 1, well-known green revolution gene, the resulting transgenic plants displayed reduced height and enhanced lodging resistance
OsPEX1	Os11g0657400	LOC_Os11g43640	lodging	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Lastly, we demonstrated that modulating OsPEX1 expression could provide a tool for improving rice lodging resistance
OsPEX1	Os11g0657400	LOC_Os11g43640	lodging resistance	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	When OsPEX1 was ectopically expressed in rice cultivars with tall stature that lacks the allele of semi-dwarf 1, well-known green revolution gene, the resulting transgenic plants displayed reduced height and enhanced lodging resistance
OsPEX1	Os11g0657400	LOC_Os11g43640	lodging resistance	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Lastly, we demonstrated that modulating OsPEX1 expression could provide a tool for improving rice lodging resistance
OsPEX1	Os11g0657400	LOC_Os11g43640	height	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	When OsPEX1 was ectopically expressed in rice cultivars with tall stature that lacks the allele of semi-dwarf 1, well-known green revolution gene, the resulting transgenic plants displayed reduced height and enhanced lodging resistance
OsPEX1	Os11g0657400	LOC_Os11g43640	lignin	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Rice leucine-rich repeat extensin-like protein OsPEX1 mediates the intersection of lignin deposition and plant growth
OsPEX1	Os11g0657400	LOC_Os11g43640	lignin	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Conversely, OsPEX1-suppresssed transgenics displayed low lignin content and reduced transcriptional abundance of genes associated with lignin biosynthesis, indicating that the OsPEX1 mediates lignin biosynthesis and/or deposition in rice
OsPEX1	Os11g0657400	LOC_Os11g43640	lignin	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Our study uncovers a causative effect between the expression of OsPEX1 and lignin deposition
OsPEX1	Os11g0657400	LOC_Os11g43640	lignin biosynthesis	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Conversely, OsPEX1-suppresssed transgenics displayed low lignin content and reduced transcriptional abundance of genes associated with lignin biosynthesis, indicating that the OsPEX1 mediates lignin biosynthesis and/or deposition in rice
OsPEX1	Os11g0657400	LOC_Os11g43640	plant growth	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Rice leucine-rich repeat extensin-like protein OsPEX1 mediates the intersection of lignin deposition and plant growth
OsPEX1	Os11g0657400	LOC_Os11g43640	development	Effect of extensin-like OsPEX1 on pollen fertility in rice	The OsPEX1 gene is preferentially expressed in rice anther, suggesting that it may be involved in the regulation of pollen development
OsPEX1	Os11g0657400	LOC_Os11g43640	fertility	Effect of extensin-like OsPEX1 on pollen fertility in rice	Effect of extensin-like OsPEX1 on pollen fertility in rice
OsPEX1	Os11g0657400	LOC_Os11g43640	pollen	Effect of extensin-like OsPEX1 on pollen fertility in rice	Effect of extensin-like OsPEX1 on pollen fertility in rice
OsPEX1	Os11g0657400	LOC_Os11g43640	pollen	Effect of extensin-like OsPEX1 on pollen fertility in rice	The OsPEX1 gene is preferentially expressed in rice anther, suggesting that it may be involved in the regulation of pollen development
OsPEX1	Os11g0657400	LOC_Os11g43640	pollen	Effect of extensin-like OsPEX1 on pollen fertility in rice	The OsPEX1 RNAi transgenic lines showed a significant decrease in seed setting rate (10%~30%) due to pollen sterility
OsPEX1	Os11g0657400	LOC_Os11g43640	sterility	Effect of extensin-like OsPEX1 on pollen fertility in rice	The OsPEX1 RNAi transgenic lines showed a significant decrease in seed setting rate (10%~30%) due to pollen sterility
OsPEX1	Os11g0657400	LOC_Os11g43640	seed	Effect of extensin-like OsPEX1 on pollen fertility in rice	The OsPEX1 RNAi transgenic lines showed a significant decrease in seed setting rate (10%~30%) due to pollen sterility
OsPEX1	Os11g0657400	LOC_Os11g43640	pollen development	Effect of extensin-like OsPEX1 on pollen fertility in rice	The OsPEX1 gene is preferentially expressed in rice anther, suggesting that it may be involved in the regulation of pollen development
OsPEX11	Os03g0302000	LOC_Os03g19010	seedlings	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Phenotypic analysis of OsPEX11 overexpression seedlings demonstrated that they had better tolerance to salt stress than wild type (WT) and OsPEX11-RNAi seedlings
OsPEX11	Os03g0302000	LOC_Os03g19010	defense	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	These results provide experimental evidence that OsPEX11 is an important gene implicated in Na(+) and K(+) regulation, and plays a critical role in salt stress tolerance by modulating the expression of cation transporters and antioxidant defense
OsPEX11	Os03g0302000	LOC_Os03g19010	salinity	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Furthermore, qPCR data suggested that OsPEX11 acted as a positive regulator of salt tolerance by reinforcing the expression of several well-known rice transporters (OsHKT2;1, OsHKT1;5, OsLti6a, OsLti6b, OsSOS1, OsNHX1, and OsAKT1) involved in Na(+)/K(+) homeostasis in transgenic plants under salinity
OsPEX11	Os03g0302000	LOC_Os03g19010	salt	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Phenotypic analysis of OsPEX11 overexpression seedlings demonstrated that they had better tolerance to salt stress than wild type (WT) and OsPEX11-RNAi seedlings
OsPEX11	Os03g0302000	LOC_Os03g19010	salt	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Furthermore, qPCR data suggested that OsPEX11 acted as a positive regulator of salt tolerance by reinforcing the expression of several well-known rice transporters (OsHKT2;1, OsHKT1;5, OsLti6a, OsLti6b, OsSOS1, OsNHX1, and OsAKT1) involved in Na(+)/K(+) homeostasis in transgenic plants under salinity
OsPEX11	Os03g0302000	LOC_Os03g19010	salt	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	These results provide experimental evidence that OsPEX11 is an important gene implicated in Na(+) and K(+) regulation, and plays a critical role in salt stress tolerance by modulating the expression of cation transporters and antioxidant defense
OsPEX11	Os03g0302000	LOC_Os03g19010	salt	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Thus, OsPEX11 could be considered in transgenic breeding for improvement of salt stress tolerance in rice crop
OsPEX11	Os03g0302000	LOC_Os03g19010	tolerance	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Phenotypic analysis of OsPEX11 overexpression seedlings demonstrated that they had better tolerance to salt stress than wild type (WT) and OsPEX11-RNAi seedlings
OsPEX11	Os03g0302000	LOC_Os03g19010	tolerance	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Furthermore, qPCR data suggested that OsPEX11 acted as a positive regulator of salt tolerance by reinforcing the expression of several well-known rice transporters (OsHKT2;1, OsHKT1;5, OsLti6a, OsLti6b, OsSOS1, OsNHX1, and OsAKT1) involved in Na(+)/K(+) homeostasis in transgenic plants under salinity
OsPEX11	Os03g0302000	LOC_Os03g19010	tolerance	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	These results provide experimental evidence that OsPEX11 is an important gene implicated in Na(+) and K(+) regulation, and plays a critical role in salt stress tolerance by modulating the expression of cation transporters and antioxidant defense
OsPEX11	Os03g0302000	LOC_Os03g19010	tolerance	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Thus, OsPEX11 could be considered in transgenic breeding for improvement of salt stress tolerance in rice crop
OsPEX11	Os03g0302000	LOC_Os03g19010	salt tolerance	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Furthermore, qPCR data suggested that OsPEX11 acted as a positive regulator of salt tolerance by reinforcing the expression of several well-known rice transporters (OsHKT2;1, OsHKT1;5, OsLti6a, OsLti6b, OsSOS1, OsNHX1, and OsAKT1) involved in Na(+)/K(+) homeostasis in transgenic plants under salinity
OsPEX11	Os03g0302000	LOC_Os03g19010	salt stress	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Phenotypic analysis of OsPEX11 overexpression seedlings demonstrated that they had better tolerance to salt stress than wild type (WT) and OsPEX11-RNAi seedlings
OsPEX11	Os03g0302000	LOC_Os03g19010	salt stress	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	These results provide experimental evidence that OsPEX11 is an important gene implicated in Na(+) and K(+) regulation, and plays a critical role in salt stress tolerance by modulating the expression of cation transporters and antioxidant defense
OsPEX11	Os03g0302000	LOC_Os03g19010	salt stress	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Thus, OsPEX11 could be considered in transgenic breeding for improvement of salt stress tolerance in rice crop
OsPEX11	Os03g0302000	LOC_Os03g19010	stress	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Phenotypic analysis of OsPEX11 overexpression seedlings demonstrated that they had better tolerance to salt stress than wild type (WT) and OsPEX11-RNAi seedlings
OsPEX11	Os03g0302000	LOC_Os03g19010	stress	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	These results provide experimental evidence that OsPEX11 is an important gene implicated in Na(+) and K(+) regulation, and plays a critical role in salt stress tolerance by modulating the expression of cation transporters and antioxidant defense
OsPEX11	Os03g0302000	LOC_Os03g19010	stress	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Thus, OsPEX11 could be considered in transgenic breeding for improvement of salt stress tolerance in rice crop
OsPEX11	Os03g0302000	LOC_Os03g19010	homeostasis	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Furthermore, qPCR data suggested that OsPEX11 acted as a positive regulator of salt tolerance by reinforcing the expression of several well-known rice transporters (OsHKT2;1, OsHKT1;5, OsLti6a, OsLti6b, OsSOS1, OsNHX1, and OsAKT1) involved in Na(+)/K(+) homeostasis in transgenic plants under salinity
OsPEX11	Os03g0302000	LOC_Os03g19010	breeding	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Thus, OsPEX11 could be considered in transgenic breeding for improvement of salt stress tolerance in rice crop
OsPEX11	Os03g0302000	LOC_Os03g19010	stress tolerance	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	These results provide experimental evidence that OsPEX11 is an important gene implicated in Na(+) and K(+) regulation, and plays a critical role in salt stress tolerance by modulating the expression of cation transporters and antioxidant defense
OsPEX11	Os03g0302000	LOC_Os03g19010	stress tolerance	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Thus, OsPEX11 could be considered in transgenic breeding for improvement of salt stress tolerance in rice crop
OsPEX11-1	Os03g0117100	LOC_Os03g02590	salt	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein
OsPEX11-1	Os03g0117100	LOC_Os03g02590	salt stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein
OsPEX11-1	Os03g0117100	LOC_Os03g02590	stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein
OsPEX11-1	Os03g0117100	LOC_Os03g02590	R protein	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein
OsPEX11-1	Os03g0117100	LOC_Os03g02590	stress response	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein
OsPEX5	Os08g0500100	LOC_Os08g39080	resistant	Cloning of two splice variants of the rice PTS1 receptor, OsPex5pL and OsPex5pS, and their functional characterization using pex5-deficient yeast and Arabidopsis	The Arabidopsis T-DNA insertional pex5 mutant, Atpex5, which does not germinate in the absence of sucrose and was resistant to indole-3-butyric acid (IBA), was perfectly rescued by over-expression of OsPex5pL, but not by OsPex5pS
OsPEX5	Os08g0500100	LOC_Os08g39080	leaf	Cloning of two splice variants of the rice PTS1 receptor, OsPex5pL and OsPex5pS, and their functional characterization using pex5-deficient yeast and Arabidopsis	Using the rice PEX14 cDNA as a bait in a yeast two-hybrid assay, two splice variants of the type I peroxisomal targeting signal (PTS1) receptor, OsPex5pL and OsPex5pS, were cloned from a pathogen-treated rice leaf cDNA library
OsPEX5	Os08g0500100	LOC_Os08g39080	leaf	Cloning of two splice variants of the rice PTS1 receptor, OsPex5pL and OsPex5pS, and their functional characterization using pex5-deficient yeast and Arabidopsis	Expression of OsPEX5L and OsPEX5S predominantly occurred in leaf tissues, and was induced by various stresses, such as exposure to the pathogen Magnaporthe grisea, and treatment with fungal elicitor, methyl viologen, NaCl or hydrogen peroxide
OsPEX5	Os08g0500100	LOC_Os08g39080	spikelet	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.
OsPEX5	Os08g0500100	LOC_Os08g39080	spikelet	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	Similar to Ospex5 mutant, knockout mutant of OsOPR7 generated via the CRISPR-Cas9 technology has reduced levels of endogenous JA and also displays an abnormal spikelet phenotype
OsPEX5	Os08g0500100	LOC_Os08g39080	spikelet	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	Application of exogenous JA can partially rescue the abnormal spikelet phenotype of Ospex5 and Osopr7
OsPEX5	Os08g0500100	LOC_Os08g39080	spikelet	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	• Our results suggest that OsPEX5 plays a critical role in regulating spikelet development through mediating peroxisomal import of OsOPR7, thus providing new insights into regulation of JA biosynthesis in plants and expanding our understanding of the biological role of JA in regulating rice reproduction
OsPEX5	Os08g0500100	LOC_Os08g39080	development	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.
OsPEX5	Os08g0500100	LOC_Os08g39080	development	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	• Our results suggest that OsPEX5 plays a critical role in regulating spikelet development through mediating peroxisomal import of OsOPR7, thus providing new insights into regulation of JA biosynthesis in plants and expanding our understanding of the biological role of JA in regulating rice reproduction
OsPEX5	Os08g0500100	LOC_Os08g39080	jasmonic	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.
OsPEX5	Os08g0500100	LOC_Os08g39080	jasmonic	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	• We show that OsPEX5 can physically interact with OsOPR7, an enzyme involved in jasmonic acid (JA) biosynthesis and is required for its import into peroxisome
OsPEX5	Os08g0500100	LOC_Os08g39080	jasmonic acid	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.
OsPEX5	Os08g0500100	LOC_Os08g39080	jasmonic acid	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	• We show that OsPEX5 can physically interact with OsOPR7, an enzyme involved in jasmonic acid (JA) biosynthesis and is required for its import into peroxisome
OsPEX5	Os08g0500100	LOC_Os08g39080	ja	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	Similar to Ospex5 mutant, knockout mutant of OsOPR7 generated via the CRISPR-Cas9 technology has reduced levels of endogenous JA and also displays an abnormal spikelet phenotype
OsPEX5	Os08g0500100	LOC_Os08g39080	ja	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	Application of exogenous JA can partially rescue the abnormal spikelet phenotype of Ospex5 and Osopr7
OsPEX5	Os08g0500100	LOC_Os08g39080	ja	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	• Our results suggest that OsPEX5 plays a critical role in regulating spikelet development through mediating peroxisomal import of OsOPR7, thus providing new insights into regulation of JA biosynthesis in plants and expanding our understanding of the biological role of JA in regulating rice reproduction
OsPEX5	Os08g0500100	LOC_Os08g39080	JA	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	Similar to Ospex5 mutant, knockout mutant of OsOPR7 generated via the CRISPR-Cas9 technology has reduced levels of endogenous JA and also displays an abnormal spikelet phenotype
OsPEX5	Os08g0500100	LOC_Os08g39080	JA	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	Application of exogenous JA can partially rescue the abnormal spikelet phenotype of Ospex5 and Osopr7
OsPEX5	Os08g0500100	LOC_Os08g39080	JA	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	• Our results suggest that OsPEX5 plays a critical role in regulating spikelet development through mediating peroxisomal import of OsOPR7, thus providing new insights into regulation of JA biosynthesis in plants and expanding our understanding of the biological role of JA in regulating rice reproduction
OsPEX5	Os08g0500100	LOC_Os08g39080	spikelet development	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.
OsPEX5	Os08g0500100	LOC_Os08g39080	spikelet development	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	• Our results suggest that OsPEX5 plays a critical role in regulating spikelet development through mediating peroxisomal import of OsOPR7, thus providing new insights into regulation of JA biosynthesis in plants and expanding our understanding of the biological role of JA in regulating rice reproduction
OsPEX5	Os08g0500100	LOC_Os08g39080	JA biosynthesis	OsPEX5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	• Our results suggest that OsPEX5 plays a critical role in regulating spikelet development through mediating peroxisomal import of OsOPR7, thus providing new insights into regulation of JA biosynthesis in plants and expanding our understanding of the biological role of JA in regulating rice reproduction
OsPFA-DSP1	Os09g0135700	LOC_Os09g05020	stomata	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants	Ectopic overexpression of OsPFA-DSP1 in tobacco increased sensitivity to drought stress and insensitivity to ABA-induced stomatal closure and inhibition of stomatal opening
OsPFA-DSP1	Os09g0135700	LOC_Os09g05020	drought	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants	Quantitative real-time PCR and GENEVESTIGATOR analysis showed that OsPFA-DSP1 mRNA was induced by drought stress
OsPFA-DSP1	Os09g0135700	LOC_Os09g05020	drought	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants	Ectopic overexpression of OsPFA-DSP1 in tobacco increased sensitivity to drought stress and insensitivity to ABA-induced stomatal closure and inhibition of stomatal opening
OsPFA-DSP1	Os09g0135700	LOC_Os09g05020	drought	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants	Furthermore, overexpression of OsPFA-DSP1 in rice also increased sensitivity to drought stress
OsPFA-DSP1	Os09g0135700	LOC_Os09g05020	drought	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants	These results indicated that OsPFA-DSP1 is a functional PTP and may act as a negative regulator in drought stress responses
OsPFA-DSP1	Os09g0135700	LOC_Os09g05020	drought	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants
OsPFA-DSP1	Os09g0135700	LOC_Os09g05020	stomatal	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants	Ectopic overexpression of OsPFA-DSP1 in tobacco increased sensitivity to drought stress and insensitivity to ABA-induced stomatal closure and inhibition of stomatal opening
OsPFA-DSP2	Os02g0771400	LOC_Os02g53160	panicle	Two homologous putative protein tyrosine phosphatases, OsPFA-DSP2 and AtPFA-DSP4, negatively regulate the pathogen response in transgenic plants	Here, we found that OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus
OsPFA-DSP2	Os02g0771400	LOC_Os02g53160	seedling	Two homologous putative protein tyrosine phosphatases, OsPFA-DSP2 and AtPFA-DSP4, negatively regulate the pathogen response in transgenic plants	Here, we found that OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus
OsPFA-DSP2	Os02g0771400	LOC_Os02g53160	root	Two homologous putative protein tyrosine phosphatases, OsPFA-DSP2 and AtPFA-DSP4, negatively regulate the pathogen response in transgenic plants	Here, we found that OsPFA-DSP2 was mainly expressed in calli, seedlings, roots, and young panicles, and localized in cytoplasm and nucleus
OsPG2	Os01g0517500	LOC_Os01g33300	biotic stress	Structural Alteration of Rice Pectin Affects Cell Wall Mechanical Strength and Pathogenicity of the Rice Blast Fungus Under Weak Light Conditions.	Under normal light conditions, overexpression of OsPG2 decreased the pectin content, but did not affect cell adhesion and sensitivity to biotic stresses
OsPG2	Os01g0517500	LOC_Os01g33300	cell wall	Structural Alteration of Rice Pectin Affects Cell Wall Mechanical Strength and Pathogenicity of the Rice Blast Fungus Under Weak Light Conditions.	Overexpression of OsPG2 in rice under weak light conditions increased the activity of PG, which increased the degradation of pectin in the cell wall, thereby reducing adhesion
OsPGIP1	Os05g0104200	LOC_Os05g01380	sheath	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Functional analysis of OsPGIP1 in rice sheath blight resistance.
OsPGIP1	Os05g0104200	LOC_Os05g01380	sheath	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Furthermore, the levels of sheath blight resistance were in accordance with the expression levels of OsPGIP1 in the transgenic lines
OsPGIP1	Os05g0104200	LOC_Os05g01380	sheath	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Our results reveal the functions of OsPGIP1 and its resistance mechanism to rice sheath blight, which will facilitate rice breeding for sheath blight resistance
OsPGIP1	Os05g0104200	LOC_Os05g01380	blight	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Functional analysis of OsPGIP1 in rice sheath blight resistance.
OsPGIP1	Os05g0104200	LOC_Os05g01380	blight	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Furthermore, the levels of sheath blight resistance were in accordance with the expression levels of OsPGIP1 in the transgenic lines
OsPGIP1	Os05g0104200	LOC_Os05g01380	blight	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Our results reveal the functions of OsPGIP1 and its resistance mechanism to rice sheath blight, which will facilitate rice breeding for sheath blight resistance
OsPGIP1	Os05g0104200	LOC_Os05g01380	breeding	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Our results reveal the functions of OsPGIP1 and its resistance mechanism to rice sheath blight, which will facilitate rice breeding for sheath blight resistance
OsPGIP1	Os05g0104200	LOC_Os05g01380	resistance	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Furthermore, the levels of sheath blight resistance were in accordance with the expression levels of OsPGIP1 in the transgenic lines
OsPGIP1	Os05g0104200	LOC_Os05g01380	resistance	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Our results reveal the functions of OsPGIP1 and its resistance mechanism to rice sheath blight, which will facilitate rice breeding for sheath blight resistance
OsPGIP1	Os05g0104200	LOC_Os05g01380	tillering	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Our results also show that OsPGIP1 is most highly expressed at the late tillering stage in the sheath of YSBR1, coinciding with the critical stage of SB development in field
OsPGIP1	Os05g0104200	LOC_Os05g01380	resistance	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.
OsPGIP1	Os05g0104200	LOC_Os05g01380	resistance	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Overexpression of OsPGIP1 significantly increased rice resistance to SB and inhibited tissue degradation caused by R
OsPGIP1	Os05g0104200	LOC_Os05g01380	resistance	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Together, our results not only demonstrate the important role of OsPGIP1 in combatting the rice SB disease but also provide a new avenue to the improvement of rice SB resistance by manipulating an endogenous gene
OsPGIP1	Os05g0104200	LOC_Os05g01380	development	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Our results also show that OsPGIP1 is most highly expressed at the late tillering stage in the sheath of YSBR1, coinciding with the critical stage of SB development in field
OsPGIP1	Os05g0104200	LOC_Os05g01380	sheath	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.
OsPGIP1	Os05g0104200	LOC_Os05g01380	sheath	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Our results also show that OsPGIP1 is most highly expressed at the late tillering stage in the sheath of YSBR1, coinciding with the critical stage of SB development in field
OsPGIP1	Os05g0104200	LOC_Os05g01380	yield	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Furthermore, OsPGIP1 overexpression did not affect rice agronomic traits or yield components
OsPGIP1	Os05g0104200	LOC_Os05g01380	disease	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Together, our results not only demonstrate the important role of OsPGIP1 in combatting the rice SB disease but also provide a new avenue to the improvement of rice SB resistance by manipulating an endogenous gene
OsPGIP1	Os05g0104200	LOC_Os05g01380	resistant	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Our real-time reverse-transcription polymerase chain reaction results indicated that resistant rice 'YSBR1' and 'Jasmine 85' express significantly higher levels of OsPGIP1 than susceptible 'Lemont'
OsPGIP2	Os05g0104150	LOC_Os05g01370	resistance	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.
OsPGIP2	Os05g0104150	LOC_Os05g01370	resistance	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	sclerotiorum resistance in seedling and adult rapeseed, the results reported here demonstrate that OsPGIP2 plays a major role in rapeseed defense mechanisms
OsPGIP2	Os05g0104150	LOC_Os05g01370	resistance	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	Our findings indicate that OsPGIP2 can improve disease resistance to S
OsPGIP2	Os05g0104150	LOC_Os05g01370	seedling	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	sclerotiorum resistance in seedling and adult rapeseed, the results reported here demonstrate that OsPGIP2 plays a major role in rapeseed defense mechanisms
OsPGIP2	Os05g0104150	LOC_Os05g01370	seed	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	The overexpression of OsPGIP2 also led to constitutively increased cell wall cellulose and hemicellulose content in stems without compromising seed quality
OsPGIP2	Os05g0104150	LOC_Os05g01370	defense	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.
OsPGIP2	Os05g0104150	LOC_Os05g01370	defense	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	The constitutive expression of OsPGIP2 in rapeseed plants provided a rapid and potentiated defense response, including the production of reactive oxygen species, interaction with S
OsPGIP2	Os05g0104150	LOC_Os05g01370	defense	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	sclerotiorum resistance in seedling and adult rapeseed, the results reported here demonstrate that OsPGIP2 plays a major role in rapeseed defense mechanisms
OsPGIP2	Os05g0104150	LOC_Os05g01370	defense response	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	The constitutive expression of OsPGIP2 in rapeseed plants provided a rapid and potentiated defense response, including the production of reactive oxygen species, interaction with S
OsPGIP2	Os05g0104150	LOC_Os05g01370	disease	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	Our findings indicate that OsPGIP2 can improve disease resistance to S
OsPGIP2	Os05g0104150	LOC_Os05g01370	disease resistance	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	Our findings indicate that OsPGIP2 can improve disease resistance to S
OsPGIP2	Os05g0104150	LOC_Os05g01370	cellulose	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	The overexpression of OsPGIP2 also led to constitutively increased cell wall cellulose and hemicellulose content in stems without compromising seed quality
OsPGIP2	Os05g0104150	LOC_Os05g01370	cell wall	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	The overexpression of OsPGIP2 also led to constitutively increased cell wall cellulose and hemicellulose content in stems without compromising seed quality
OsPGIP2	Os05g0104150	LOC_Os05g01370	quality	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	The overexpression of OsPGIP2 also led to constitutively increased cell wall cellulose and hemicellulose content in stems without compromising seed quality
OsPGIP2	Os05g0104150	LOC_Os05g01370	reactive oxygen species	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	The constitutive expression of OsPGIP2 in rapeseed plants provided a rapid and potentiated defense response, including the production of reactive oxygen species, interaction with S
OsPGIP4	Os05g0104700	LOC_Os05g01444	leaf	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	OsPGIP4 overexpression enhances resistance to bacterial leaf streak in rice
OsPGIP4	Os05g0104700	LOC_Os05g01444	leaf	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	Here, we show that the chromosomal location of OsPGIP4 coincides with the major bacterial leaf streak resistance quantitative trait locus qBlsr5a on the short arm of chromosome 5
OsPGIP4	Os05g0104700	LOC_Os05g01444	leaf	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	Our results not only provide the first report that rice PGIP could enhance resistant against a bacterial pathogen but also indicate that OsPGIP4 is a potential component of the qBlsr5a locus for bacterial leaf streak in rice
OsPGIP4	Os05g0104700	LOC_Os05g01444	resistance	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	OsPGIP4 overexpression enhances resistance to bacterial leaf streak in rice
OsPGIP4	Os05g0104700	LOC_Os05g01444	resistance	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	Here, we show that the chromosomal location of OsPGIP4 coincides with the major bacterial leaf streak resistance quantitative trait locus qBlsr5a on the short arm of chromosome 5
OsPGIP4	Os05g0104700	LOC_Os05g01444	resistance	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	OsPGIP4 overexpression enhanced the resistance of the susceptible rice variety Zhonghua 11 to RS105
OsPGIP4	Os05g0104700	LOC_Os05g01444	resistance	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	In contrast, repressing OsPGIP4 expression resulted in an increase in disease lesions caused by RS105 in Zhonghua 11 and in Acc8558, a qBlsr5a resistance donor
OsPGIP4	Os05g0104700	LOC_Os05g01444	disease	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	In contrast, repressing OsPGIP4 expression resulted in an increase in disease lesions caused by RS105 in Zhonghua 11 and in Acc8558, a qBlsr5a resistance donor
OsPGIP4	Os05g0104700	LOC_Os05g01444	resistant	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	Our results not only provide the first report that rice PGIP could enhance resistant against a bacterial pathogen but also indicate that OsPGIP4 is a potential component of the qBlsr5a locus for bacterial leaf streak in rice
OsPGIP4	Os05g0104700	LOC_Os05g01444	pathogen	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	OsPGIP4 expression was up-regulated upon inoculation with the pathogen Xanthomonas oryzae pv
OsPGIP4	Os05g0104700	LOC_Os05g01444	pathogen	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	Our results not only provide the first report that rice PGIP could enhance resistant against a bacterial pathogen but also indicate that OsPGIP4 is a potential component of the qBlsr5a locus for bacterial leaf streak in rice
OsPgk2	Os02g0169300	LOC_Os02g07260	salinity	Ectopic expression of Pokkali phosphoglycerate kinase-2 (OsPGK2-P) improves yield in tobacco plants under salinity stress.	Detailed characterization of OsPgk2 transcript and protein showed that it is strongly induced by salinity stress in two contrasting genotypes of rice, i
OsPgk2	Os02g0169300	LOC_Os02g07260	salinity stress	Ectopic expression of Pokkali phosphoglycerate kinase-2 (OsPGK2-P) improves yield in tobacco plants under salinity stress.	Detailed characterization of OsPgk2 transcript and protein showed that it is strongly induced by salinity stress in two contrasting genotypes of rice, i
OsPgk2	Os02g0169300	LOC_Os02g07260	stress	Ectopic expression of Pokkali phosphoglycerate kinase-2 (OsPGK2-P) improves yield in tobacco plants under salinity stress.	Detailed characterization of OsPgk2 transcript and protein showed that it is strongly induced by salinity stress in two contrasting genotypes of rice, i
OsPGL1	Os12g0163600	LOC_Os12g06650	chloroplast	A Rice Dual-localized Pentatricopeptide Repeat Protein is involved in Organellar RNA Editing together with OsMORFs.	 The loss of function of OsPGL1 resulted in defects in both chloroplast RNA editing of ndhD-878 and mitochondrial RNA editing of ccmFc-543, both of which could be restored via complementary validation
OsPGL1	Os12g0163600	LOC_Os12g06650	chloroplast	A Rice Dual-localized Pentatricopeptide Repeat Protein is involved in Organellar RNA Editing together with OsMORFs.	 Despite synonymous editing of ccmFc-543, the loss of editing of ndhD-878 caused a failed conversion of serine to leucine, leading to chloroplast dysfunction and defects in the photosynthetic complex; the results of additional experiments demonstrated that OsPGL1 directly binds to both transcripts
OsPGL1	Os12g0163600	LOC_Os12g06650	R protein	A Rice Dual-localized Pentatricopeptide Repeat Protein is involved in Organellar RNA Editing together with OsMORFs.	 Here, we identified a rice dual-localized PPR protein, OsPGL1
OsPGL1	Os12g0163600	LOC_Os12g06650	chloroplast	PALE-GREEN LEAF 1, a rice cpSRP54 protein, is essential for the assembly of the PSI-LHCI supercomplex.	 Map-based cloning of this gene revealed that OsPGL1 encodes a chloroplast targeted protein homologous to the 54-kDa subunit of the signal recognition particle (cpSRP54)
OsPGL1	Os12g0163600	LOC_Os12g06650	map-based cloning	PALE-GREEN LEAF 1, a rice cpSRP54 protein, is essential for the assembly of the PSI-LHCI supercomplex.	 Map-based cloning of this gene revealed that OsPGL1 encodes a chloroplast targeted protein homologous to the 54-kDa subunit of the signal recognition particle (cpSRP54)
OsPGR5	Os08g0566600	LOC_Os08g45190	redox homeostasis	PGR5-dependent cyclic electron transport around PSI contributes to the redox homeostasis in chloroplasts rather than CO(2) fixation and biomass production in rice.	PGR5-dependent cyclic electron transport around PSI contributes to the redox homeostasis in chloroplasts rather than CO(2) fixation and biomass production in rice.
OsPGR5	Os08g0566600	LOC_Os08g45190	chloroplast	PGR5-dependent cyclic electron transport around PSI contributes to the redox homeostasis in chloroplasts rather than CO(2) fixation and biomass production in rice.	PGR5-dependent cyclic electron transport around PSI contributes to the redox homeostasis in chloroplasts rather than CO(2) fixation and biomass production in rice.
OSPGYRP	Os07g0585500	LOC_Os07g39680	stress	and tyrosine-rich protein) gene, which is involved in vesicle trafficking, enhanced cold tolerance in E. coli.	The expression of the OSPGYRP gene was induced by cold, salt, and osmotic stress
OSPGYRP	Os07g0585500	LOC_Os07g39680	stress	and tyrosine-rich protein) gene, which is involved in vesicle trafficking, enhanced cold tolerance in E. coli.	These results show that OsPGYRP is a novel protein involved in vesicle trafficking and plays an important role in plant adaptation to stress
OSPGYRP	Os07g0585500	LOC_Os07g39680	osmotic stress	and tyrosine-rich protein) gene, which is involved in vesicle trafficking, enhanced cold tolerance in E. coli.	The expression of the OSPGYRP gene was induced by cold, salt, and osmotic stress
OsPH9	Os09g0433600	LOC_Os09g26340	height	BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature Plant Height in Rice (Oryza sativa).	 Subsequent haplotype and sequence analyses indicated that OsPH9 was the most probable candidate gene for plant height at this locus, and functional analysis of osph9 CRISPR/Cas9-generated OsPH9 knockout mutants supported this conclusion
OsPH9	Os09g0433600	LOC_Os09g26340	height	BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature Plant Height in Rice (Oryza sativa).	 CONCLUSION: OsPH9 was identified as a novel regulatory gene associated with plant height in rice, along with a height-reducing allele in &#x27;Dongfu-114&#x27; rice, thereby representing an important molecular target for rice improvement
OsPH9	Os09g0433600	LOC_Os09g26340	plant height	BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature Plant Height in Rice (Oryza sativa).	 Subsequent haplotype and sequence analyses indicated that OsPH9 was the most probable candidate gene for plant height at this locus, and functional analysis of osph9 CRISPR/Cas9-generated OsPH9 knockout mutants supported this conclusion
OsPH9	Os09g0433600	LOC_Os09g26340	plant height	BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature Plant Height in Rice (Oryza sativa).	 CONCLUSION: OsPH9 was identified as a novel regulatory gene associated with plant height in rice, along with a height-reducing allele in &#x27;Dongfu-114&#x27; rice, thereby representing an important molecular target for rice improvement
OsPHF1	Os07g0187700	LOC_Os07g09000	transporter	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	OsPHF1, a rice (Oryza sativa) gene homologous to AtPHF1, was isolated and found to regulate the localization of both low- and high-affinity Pi transporters to the plasma membrane
OsPHF1	Os07g0187700	LOC_Os07g09000	transporter	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	The data indicate that mutation of OsPHF1 results in the endoplasmic reticulum retention of the low-affinity Pi transporter OsPT2 and high-affinity Pi transporter OsPT8
OsPHF1	Os07g0187700	LOC_Os07g09000	transporter	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	These results indicate that the role of OsPHF1 is unique in the localization of both low- and high-affinity Pi transporters on the plasma membrane in rice and determines Pi uptake and translocation in rice
OsPHF1	Os07g0187700	LOC_Os07g09000	transporter	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice
OsPHF1	Os07g0187700	LOC_Os07g09000	shoot	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHF1	Os07g0187700	LOC_Os07g09000	transporter	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHF1	Os07g0187700	LOC_Os07g09000	pi	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHF1	Os07g0187700	LOC_Os07g09000	phosphate	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice
OsPHF1	Os07g0187700	LOC_Os07g09000	phosphate	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHF1	Os07g0187700	LOC_Os07g09000	shoot	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	Mutation of OsPHF1 also reduced Pi accumulation in plants exhibiting excessive shoot Pi accumulation due to the overexpression of OsPHR2
OsPHF1	Os07g0187700	LOC_Os07g09000	shoot	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	Overexpression of OsPHF1 increased Pi accumulation in both roots and shoots in a solution culture with Pi-supplied condition
OsPHF1	Os07g0187700	LOC_Os07g09000	transcription factor	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHF1	Os07g0187700	LOC_Os07g09000	root	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHF1	Os07g0187700	LOC_Os07g09000	pi	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	OsPHF1, a rice (Oryza sativa) gene homologous to AtPHF1, was isolated and found to regulate the localization of both low- and high-affinity Pi transporters to the plasma membrane
OsPHF1	Os07g0187700	LOC_Os07g09000	pi	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	Three OsPHF1 allelic mutants carrying one-point mutations at the fifth WD-repeat motif and two at the transmembrane helix, respectively, showed arsenate resistance and severely reduced Pi accumulation
OsPHF1	Os07g0187700	LOC_Os07g09000	pi	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	The data indicate that mutation of OsPHF1 results in the endoplasmic reticulum retention of the low-affinity Pi transporter OsPT2 and high-affinity Pi transporter OsPT8
OsPHF1	Os07g0187700	LOC_Os07g09000	pi	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	Mutation of OsPHF1 also reduced Pi accumulation in plants exhibiting excessive shoot Pi accumulation due to the overexpression of OsPHR2
OsPHF1	Os07g0187700	LOC_Os07g09000	pi	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	Overexpression of OsPHF1 increased Pi accumulation in both roots and shoots in a solution culture with Pi-supplied condition
OsPHF1	Os07g0187700	LOC_Os07g09000	pi	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	These results indicate that the role of OsPHF1 is unique in the localization of both low- and high-affinity Pi transporters on the plasma membrane in rice and determines Pi uptake and translocation in rice
OsPHF1	Os07g0187700	LOC_Os07g09000	root	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	Overexpression of OsPHF1 increased Pi accumulation in both roots and shoots in a solution culture with Pi-supplied condition
OsPHGPX	Os03g0358100	LOC_Os03g24380	blast	Effects of signaling molecules, protein phosphatase inhibitors and blast pathogen (Magnaporthe grisea) on the mRNA level of a rice (Oryza sativa L.) phospholipid hydroperoxide glutathione peroxidase (OsPHGPX) gene in seedling leaves	Effects of signaling molecules, protein phosphatase inhibitors and blast pathogen (Magnaporthe grisea) on the mRNA level of a rice (Oryza sativa L.) phospholipid hydroperoxide glutathione peroxidase (OsPHGPX) gene in seedling leaves
OsPHGPX	Os03g0358100	LOC_Os03g24380	seedling	Effects of signaling molecules, protein phosphatase inhibitors and blast pathogen (Magnaporthe grisea) on the mRNA level of a rice (Oryza sativa L.) phospholipid hydroperoxide glutathione peroxidase (OsPHGPX) gene in seedling leaves	Effects of signaling molecules, protein phosphatase inhibitors and blast pathogen (Magnaporthe grisea) on the mRNA level of a rice (Oryza sativa L.) phospholipid hydroperoxide glutathione peroxidase (OsPHGPX) gene in seedling leaves
OsPHL3	Os09g0299000	LOC_Os09g12750	nucleus	Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis.	OsPHL3 contains a MYB-CC domain, and was localized in the nucleus with transcriptional activation potential
OsPHL3	Os09g0299000	LOC_Os09g12750	flowering time	Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis.	Rice lines overexpressing OsPHL3 showed a delayed flowering time in the genetic background of TP309 under both long-day (Beijing) and short-day (Hainan) conditions
OsPHL3	Os09g0299000	LOC_Os09g12750	flowering time	Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis.	By contrast, the knockout rice lines of OsPHL3 by CRISPR/Cas9 technology promoted flowering time regardless of genetic backgrounds (i
OsPHL3	Os09g0299000	LOC_Os09g12750	flowering time	Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis.	Further analysis indicated that OsPHL3 delayed flowering time by down-regulating the expression of Hd3a and RFT1 through promoting Hd1 under long-day conditions (LDs), or suppressing Ehd1/Hd1 under short-day conditions (SDs)
OsPHO1;1	Os01g0110100	LOC_Os01g02000	zinc	The Involvement of OsPHO1;1 in the Regulation of Iron Transport Through Integration of Phosphate and Zinc Deficiency Signaling.	The Involvement of OsPHO1;1 in the Regulation of Iron Transport Through Integration of Phosphate and Zinc Deficiency Signaling.
OsPHO1;1	Os01g0110100	LOC_Os01g02000	iron	The Involvement of OsPHO1;1 in the Regulation of Iron Transport Through Integration of Phosphate and Zinc Deficiency Signaling.	The Involvement of OsPHO1;1 in the Regulation of Iron Transport Through Integration of Phosphate and Zinc Deficiency Signaling.
OsPHO1;1	Os01g0110100	LOC_Os01g02000	phosphate	The Involvement of OsPHO1;1 in the Regulation of Iron Transport Through Integration of Phosphate and Zinc Deficiency Signaling.	The Involvement of OsPHO1;1 in the Regulation of Iron Transport Through Integration of Phosphate and Zinc Deficiency Signaling.
OsPHO1;1	Os01g0110100	LOC_Os01g02000	xylem	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHO1;1	Os01g0110100	LOC_Os01g02000	xylem	Node-localized transporters of phosphorus essential for seed development in rice.	Taken together, OsPHO1;2 expressed in node I is responsible for unloading of P from the xylem of enlarged vascular bundles, while OsPHO1;1 is involved in reloading P into phloem of diffuse vascular bundles for subsequent allocation of P to the seeds
OsPHO1;1	Os01g0110100	LOC_Os01g02000	vascular bundle	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHO1;1	Os01g0110100	LOC_Os01g02000	vascular bundle	Node-localized transporters of phosphorus essential for seed development in rice.	Taken together, OsPHO1;2 expressed in node I is responsible for unloading of P from the xylem of enlarged vascular bundles, while OsPHO1;1 is involved in reloading P into phloem of diffuse vascular bundles for subsequent allocation of P to the seeds
OsPHO1;1	Os01g0110100	LOC_Os01g02000	panicle	Node-localized transporters of phosphorus essential for seed development in rice.	At the reproductive stage, both OsPHO1;1 and OsPHO1;2 showed higher expression in the node I, the uppermost node connecting to panicle
OsPHO1;1	Os01g0110100	LOC_Os01g02000	development	Node-localized transporters of phosphorus essential for seed development in rice.	Furthermore, OsPHO1;1 and OsPHO1;2 expressed in the caryopsis are important for delivering of P from the maternal tissues to the filial tissues for seed development
OsPHO1;1	Os01g0110100	LOC_Os01g02000	seed	Node-localized transporters of phosphorus essential for seed development in rice.	Knockout of OsPHO1;2 as well as OsPHO1;1 with less extent decreased the distribution of P to the seed, resulting in decreased seed size and delayed germination
OsPHO1;1	Os01g0110100	LOC_Os01g02000	seed	Node-localized transporters of phosphorus essential for seed development in rice.	Furthermore, OsPHO1;1 and OsPHO1;2 expressed in the caryopsis are important for delivering of P from the maternal tissues to the filial tissues for seed development
OsPHO1;1	Os01g0110100	LOC_Os01g02000	reproductive	Node-localized transporters of phosphorus essential for seed development in rice.	At the reproductive stage, both OsPHO1;1 and OsPHO1;2 showed higher expression in the node I, the uppermost node connecting to panicle
OsPHO1;1	Os01g0110100	LOC_Os01g02000	phloem	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHO1;1	Os01g0110100	LOC_Os01g02000	phloem	Node-localized transporters of phosphorus essential for seed development in rice.	Taken together, OsPHO1;2 expressed in node I is responsible for unloading of P from the xylem of enlarged vascular bundles, while OsPHO1;1 is involved in reloading P into phloem of diffuse vascular bundles for subsequent allocation of P to the seeds
OsPHO1;1	Os01g0110100	LOC_Os01g02000	seed size	Node-localized transporters of phosphorus essential for seed development in rice.	Knockout of OsPHO1;2 as well as OsPHO1;1 with less extent decreased the distribution of P to the seed, resulting in decreased seed size and delayed germination
OsPHO1;1	Os01g0110100	LOC_Os01g02000	plasma membrane	Node-localized transporters of phosphorus essential for seed development in rice.	Both OsPHO1;1 and OsPHO1;2 were localized to the plasma membrane and showed influx transport activities for inorganic phosphate
OsPHO1;1	Os01g0110100	LOC_Os01g02000	seed development	Node-localized transporters of phosphorus essential for seed development in rice.	Furthermore, OsPHO1;1 and OsPHO1;2 expressed in the caryopsis are important for delivering of P from the maternal tissues to the filial tissues for seed development
OsPHO1;1	Os01g0110100	LOC_Os01g02000	phosphate	Node-localized transporters of phosphorus essential for seed development in rice.	Both OsPHO1;1 and OsPHO1;2 were localized to the plasma membrane and showed influx transport activities for inorganic phosphate
OsPHO1;1	Os01g0110100	LOC_Os01g02000	node	Node-localized transporters of phosphorus essential for seed development in rice.	At the reproductive stage, both OsPHO1;1 and OsPHO1;2 showed higher expression in the node I, the uppermost node connecting to panicle
OsPHO1;1	Os01g0110100	LOC_Os01g02000	node	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHO1;1	Os01g0110100	LOC_Os01g02000	node	Node-localized transporters of phosphorus essential for seed development in rice.	Taken together, OsPHO1;2 expressed in node I is responsible for unloading of P from the xylem of enlarged vascular bundles, while OsPHO1;1 is involved in reloading P into phloem of diffuse vascular bundles for subsequent allocation of P to the seeds
OsPHO1;1	Os01g0110100	LOC_Os01g02000	xylem parenchyma	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHO1;2	Os02g0809800	LOC_Os02g56510	shoot	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	Characterization of Ospho1;1 and Ospho1;2 insertion mutants revealed that only Ospho1;2 mutants had defects in Pi homeostasis, namely strong reduction in Pi transfer from root to shoot, which was accompanied by low-shoot and high-root Pi
OsPHO1;2	Os02g0809800	LOC_Os02g56510	shoot	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	Our data identify OsPHO1;2 as playing a key role in the transfer of Pi from roots to shoots in rice, and indicate that this gene could be regulated by its cis-natural antisense transcripts
OsPHO1;2	Os02g0809800	LOC_Os02g56510	pi	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	Characterization of Ospho1;1 and Ospho1;2 insertion mutants revealed that only Ospho1;2 mutants had defects in Pi homeostasis, namely strong reduction in Pi transfer from root to shoot, which was accompanied by low-shoot and high-root Pi
OsPHO1;2	Os02g0809800	LOC_Os02g56510	pi	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	Our data identify OsPHO1;2 as playing a key role in the transfer of Pi from roots to shoots in rice, and indicate that this gene could be regulated by its cis-natural antisense transcripts
OsPHO1;2	Os02g0809800	LOC_Os02g56510	homeostasis	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	Characterization of Ospho1;1 and Ospho1;2 insertion mutants revealed that only Ospho1;2 mutants had defects in Pi homeostasis, namely strong reduction in Pi transfer from root to shoot, which was accompanied by low-shoot and high-root Pi
OsPHO1;2	Os02g0809800	LOC_Os02g56510	homeostasis	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons
OsPHO1;2	Os02g0809800	LOC_Os02g56510	phosphate	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	However, while the OsPHO1;2 sense transcript was relatively stable under various nutrient deficiencies, the antisense transcript was highly induced by inorganic phosphate (Pi) deficiency
OsPHO1;2	Os02g0809800	LOC_Os02g56510	phosphate	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons
OsPHO1;2	Os02g0809800	LOC_Os02g56510	root	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	The most abundantly expressed gene was OsPHO1;2 in the roots, for both sense and antisense transcripts
OsPHO1;2	Os02g0809800	LOC_Os02g56510	root	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	Characterization of Ospho1;1 and Ospho1;2 insertion mutants revealed that only Ospho1;2 mutants had defects in Pi homeostasis, namely strong reduction in Pi transfer from root to shoot, which was accompanied by low-shoot and high-root Pi
OsPHO1;2	Os02g0809800	LOC_Os02g56510	root	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons	Our data identify OsPHO1;2 as playing a key role in the transfer of Pi from roots to shoots in rice, and indicate that this gene could be regulated by its cis-natural antisense transcripts
OsPHO1;2	Os02g0809800	LOC_Os02g56510	xylem	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHO1;2	Os02g0809800	LOC_Os02g56510	xylem	Node-localized transporters of phosphorus essential for seed development in rice.	Taken together, OsPHO1;2 expressed in node I is responsible for unloading of P from the xylem of enlarged vascular bundles, while OsPHO1;1 is involved in reloading P into phloem of diffuse vascular bundles for subsequent allocation of P to the seeds
OsPHO1;2	Os02g0809800	LOC_Os02g56510	vascular bundle	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHO1;2	Os02g0809800	LOC_Os02g56510	vascular bundle	Node-localized transporters of phosphorus essential for seed development in rice.	Taken together, OsPHO1;2 expressed in node I is responsible for unloading of P from the xylem of enlarged vascular bundles, while OsPHO1;1 is involved in reloading P into phloem of diffuse vascular bundles for subsequent allocation of P to the seeds
OsPHO1;2	Os02g0809800	LOC_Os02g56510	panicle	Node-localized transporters of phosphorus essential for seed development in rice.	At the reproductive stage, both OsPHO1;1 and OsPHO1;2 showed higher expression in the node I, the uppermost node connecting to panicle
OsPHO1;2	Os02g0809800	LOC_Os02g56510	development	Node-localized transporters of phosphorus essential for seed development in rice.	Furthermore, OsPHO1;1 and OsPHO1;2 expressed in the caryopsis are important for delivering of P from the maternal tissues to the filial tissues for seed development
OsPHO1;2	Os02g0809800	LOC_Os02g56510	seed	Node-localized transporters of phosphorus essential for seed development in rice.	Knockout of OsPHO1;2 as well as OsPHO1;1 with less extent decreased the distribution of P to the seed, resulting in decreased seed size and delayed germination
OsPHO1;2	Os02g0809800	LOC_Os02g56510	seed	Node-localized transporters of phosphorus essential for seed development in rice.	Furthermore, OsPHO1;1 and OsPHO1;2 expressed in the caryopsis are important for delivering of P from the maternal tissues to the filial tissues for seed development
OsPHO1;2	Os02g0809800	LOC_Os02g56510	reproductive	Node-localized transporters of phosphorus essential for seed development in rice.	At the reproductive stage, both OsPHO1;1 and OsPHO1;2 showed higher expression in the node I, the uppermost node connecting to panicle
OsPHO1;2	Os02g0809800	LOC_Os02g56510	phloem	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHO1;2	Os02g0809800	LOC_Os02g56510	phloem	Node-localized transporters of phosphorus essential for seed development in rice.	Taken together, OsPHO1;2 expressed in node I is responsible for unloading of P from the xylem of enlarged vascular bundles, while OsPHO1;1 is involved in reloading P into phloem of diffuse vascular bundles for subsequent allocation of P to the seeds
OsPHO1;2	Os02g0809800	LOC_Os02g56510	seed size	Node-localized transporters of phosphorus essential for seed development in rice.	Knockout of OsPHO1;2 as well as OsPHO1;1 with less extent decreased the distribution of P to the seed, resulting in decreased seed size and delayed germination
OsPHO1;2	Os02g0809800	LOC_Os02g56510	plasma membrane	Node-localized transporters of phosphorus essential for seed development in rice.	Both OsPHO1;1 and OsPHO1;2 were localized to the plasma membrane and showed influx transport activities for inorganic phosphate
OsPHO1;2	Os02g0809800	LOC_Os02g56510	seed development	Node-localized transporters of phosphorus essential for seed development in rice.	Furthermore, OsPHO1;1 and OsPHO1;2 expressed in the caryopsis are important for delivering of P from the maternal tissues to the filial tissues for seed development
OsPHO1;2	Os02g0809800	LOC_Os02g56510	phosphate	Node-localized transporters of phosphorus essential for seed development in rice.	Both OsPHO1;1 and OsPHO1;2 were localized to the plasma membrane and showed influx transport activities for inorganic phosphate
OsPHO1;2	Os02g0809800	LOC_Os02g56510	node	Node-localized transporters of phosphorus essential for seed development in rice.	At the reproductive stage, both OsPHO1;1 and OsPHO1;2 showed higher expression in the node I, the uppermost node connecting to panicle
OsPHO1;2	Os02g0809800	LOC_Os02g56510	node	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHO1;2	Os02g0809800	LOC_Os02g56510	node	Node-localized transporters of phosphorus essential for seed development in rice.	Taken together, OsPHO1;2 expressed in node I is responsible for unloading of P from the xylem of enlarged vascular bundles, while OsPHO1;1 is involved in reloading P into phloem of diffuse vascular bundles for subsequent allocation of P to the seeds
OsPHO1;2	Os02g0809800	LOC_Os02g56510	xylem parenchyma	Node-localized transporters of phosphorus essential for seed development in rice.	OsPHO1;1 was mainly localized at the phloem region of diffuse vascular bundles of node I, while OsPHO1;2 was expressed in the xylem parenchyma cells of the enlarged vascular bundles
OsPHR1|PHR1	Os03g0329900	LOC_Os03g21240	homeostasis	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	Transgenic plants with overexpression and repression of OsPHR1 and OsPHR2, respectively, were used for investigation of roles of the genes in Pi-signaling pathway and Pi homeostasis under Pi-sufficient and deficient conditions
OsPHR1|PHR1	Os03g0329900	LOC_Os03g21240	pi	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	Transgenic plants with overexpression and repression of OsPHR1 and OsPHR2, respectively, were used for investigation of roles of the genes in Pi-signaling pathway and Pi homeostasis under Pi-sufficient and deficient conditions
OsPHR1|PHR1	Os03g0329900	LOC_Os03g21240	shoot	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	Our results showed that both OsPHR1 and OsPHR2 are involved in Pi-starvation signaling pathway by regulation of the expression of Pi-starvation-induced genes, whereas only OsPHR2 overexpression results in the excessive accumulation of Pi in shoots under Pi-sufficient conditions
OsPHR1|PHR1	Os03g0329900	LOC_Os03g21240	pi	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	Our results showed that both OsPHR1 and OsPHR2 are involved in Pi-starvation signaling pathway by regulation of the expression of Pi-starvation-induced genes, whereas only OsPHR2 overexpression results in the excessive accumulation of Pi in shoots under Pi-sufficient conditions
OsPHR1|PHR1	Os03g0329900	LOC_Os03g21240	phosphate	Genetic manipulation of a high-affinity PHR1 target cis-element to improve phosphorous uptake in Oryza sativa L.	Phosphate starvation response 1 (PHR1) acts as the central regulator for Pi-signaling and Pi-homeostasis in plants by binding to the cis-element PHR1 binding sequence (P1BS; GNATATNC)
OsPHR1|PHR1	Os03g0329900	LOC_Os03g21240	phosphate starvation	Genetic manipulation of a high-affinity PHR1 target cis-element to improve phosphorous uptake in Oryza sativa L.	Phosphate starvation response 1 (PHR1) acts as the central regulator for Pi-signaling and Pi-homeostasis in plants by binding to the cis-element PHR1 binding sequence (P1BS; GNATATNC)
OsPHR1|PHR1	Os03g0329900	LOC_Os03g21240	phosphate starvation response	Genetic manipulation of a high-affinity PHR1 target cis-element to improve phosphorous uptake in Oryza sativa L.	Phosphate starvation response 1 (PHR1) acts as the central regulator for Pi-signaling and Pi-homeostasis in plants by binding to the cis-element PHR1 binding sequence (P1BS; GNATATNC)
OsPHR2	Os07g0438800	LOC_Os07g25710	root	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	Under Pi-sufficient conditions, overexpression of OsPHR2 mimics Pi-starvation stress in rice with enhanced root elongation and proliferated root hair growth, suggesting the involvement of OsPHR2 in Pi-dependent root architecture alteration by both systematic and local pathways
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPT2 is responsible for most of the OsPHR2-mediated accumulation of excess Pi in shoots
OsPHR2	Os07g0438800	LOC_Os07g25710	homeostasis	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	Our results showed that both OsPHR1 and OsPHR2 are involved in Pi-starvation signaling pathway by regulation of the expression of Pi-starvation-induced genes, whereas only OsPHR2 overexpression results in the excessive accumulation of Pi in shoots under Pi-sufficient conditions
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	Mutation of OsPHF1 also reduced Pi accumulation in plants exhibiting excessive shoot Pi accumulation due to the overexpression of OsPHR2
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	Our results showed that both OsPHR1 and OsPHR2 are involved in Pi-starvation signaling pathway by regulation of the expression of Pi-starvation-induced genes, whereas only OsPHR2 overexpression results in the excessive accumulation of Pi in shoots under Pi-sufficient conditions
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	In OsPHR2-overexpression plants, some Pi transporters were up-regulated under Pi-sufficient conditions, which correlates with the strongly increased content of Pi
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	The mechanism behind the OsPHR2 regulated Pi accumulation will provide useful approaches to develop smart plants with high Pi efficiency
OsPHR2	Os07g0438800	LOC_Os07g25710	root	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	The results showed that both of the genes are involved in the Pi-signaling pathway, while overexpression of OsPHR2 mimics Pi-starvation stress with enhanced root elongation and proliferated root hairs, and results in the excessive accumulation of Pi in shoots under Pi-sufficient conditions
OsPHR2	Os07g0438800	LOC_Os07g25710	root	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	OsPHR2 regulated proliferation of root hair growth and root elongation suggests that OsPHR2 is involved in both systematic and local Pi-signaling pathways
OsPHR2	Os07g0438800	LOC_Os07g25710	root	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	The transcript abundance of OsPAP10a is specifically induced by Pi deficiency and is controlled by OsPHR2, the central transcription factor controlling Pi homeostasis
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	Here we review recent advances in our understanding of the OsPHR2-mediated phosphate-signaling pathway in rice
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsSPX1 acts as a repressor in the OsPHR2-mediated phosphate-signaling pathway
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPT2 is responsible for most of the OsPHR2-mediated accumulation of excess Pi in shoots
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	Some mutants screened from ethyl methanesulfonate (EMS)-mutagenized M2 population of OsPHR2 overexpression transgenic line removed the growth inhibition, indicating that some unknown factors are crucial for Pi utilization or plant growth under the regulation of OsPHR2
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice
OsPHR2	Os07g0438800	LOC_Os07g25710	transporter	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	In OsPHR2-overexpression plants, some Pi transporters were up-regulated under Pi-sufficient conditions, which correlates with the strongly increased content of Pi
OsPHR2	Os07g0438800	LOC_Os07g25710	root	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	Mutation of OsPHF1 also reduced Pi accumulation in plants exhibiting excessive shoot Pi accumulation due to the overexpression of OsPHR2
OsPHR2	Os07g0438800	LOC_Os07g25710	transporter	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHR2	Os07g0438800	LOC_Os07g25710	root	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Here we report that OsPHR2 positively regulates the low-affinity Pi transporter gene OsPT2 by physical interaction and upstream regulation of OsPHO2 in roots
OsPHR2	Os07g0438800	LOC_Os07g25710	root	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Our data also show that OsSPX1 is a negative regulator of OsPHR2 and is involved in the feedback of Pi-signaling network in roots that is defined by OsPHR2 and OsPHO2
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphorus	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)
OsPHR2	Os07g0438800	LOC_Os07g25710	growth	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	OsPHR2 regulated proliferation of root hair growth and root elongation suggests that OsPHR2 is involved in both systematic and local Pi-signaling pathways
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHR2	Os07g0438800	LOC_Os07g25710	transporter	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Here we report that OsPHR2 positively regulates the low-affinity Pi transporter gene OsPT2 by physical interaction and upstream regulation of OsPHO2 in roots
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Previous reports have demonstrated that over-expression of OsPHR2 (the homolog of AtPHR1) and knockdown of OsSPX1 result in accumulation of excessive shoot Pi in rice
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Here we report that OsPHR2 positively regulates the low-affinity Pi transporter gene OsPT2 by physical interaction and upstream regulation of OsPHO2 in roots
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the regulation on expression of OsPT2 by OsPHR2 and the accumulation of excess shoot Pi, but it does not suppress induction of OsPT2 or the accumulation of excessive shoot Pi in the Ospho2 mutant
OsPHR2	Os07g0438800	LOC_Os07g25710	transporter	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	Transgenic plants with overexpression and repression of OsPHR1 and OsPHR2, respectively, were used for investigation of roles of the genes in Pi-signaling pathway and Pi homeostasis under Pi-sufficient and deficient conditions
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	The results showed that both of the genes are involved in the Pi-signaling pathway, while overexpression of OsPHR2 mimics Pi-starvation stress with enhanced root elongation and proliferated root hairs, and results in the excessive accumulation of Pi in shoots under Pi-sufficient conditions
OsPHR2	Os07g0438800	LOC_Os07g25710	homeostasis	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	The results showed that both of the genes are involved in the Pi-signaling pathway, while overexpression of OsPHR2 mimics Pi-starvation stress with enhanced root elongation and proliferated root hairs, and results in the excessive accumulation of Pi in shoots under Pi-sufficient conditions
OsPHR2	Os07g0438800	LOC_Os07g25710	architecture	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	Under Pi-sufficient conditions, overexpression of OsPHR2 mimics Pi-starvation stress in rice with enhanced root elongation and proliferated root hair growth, suggesting the involvement of OsPHR2 in Pi-dependent root architecture alteration by both systematic and local pathways
OsPHR2	Os07g0438800	LOC_Os07g25710	transcription factor	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHR2	Os07g0438800	LOC_Os07g25710	growth	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	Under Pi-sufficient conditions, overexpression of OsPHR2 mimics Pi-starvation stress in rice with enhanced root elongation and proliferated root hair growth, suggesting the involvement of OsPHR2 in Pi-dependent root architecture alteration by both systematic and local pathways
OsPHR2	Os07g0438800	LOC_Os07g25710	root	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Previous reports have demonstrated that over-expression of OsPHR2 (the homolog of AtPHR1) and knockdown of OsSPX1 result in accumulation of excessive shoot Pi in rice
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsPT2 is responsible for most of the OsPHR2-mediated accumulation of excess shoot Pi
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the regulation on expression of OsPT2 by OsPHR2 and the accumulation of excess shoot Pi, but it does not suppress induction of OsPT2 or the accumulation of excessive shoot Pi in the Ospho2 mutant
OsPHR2	Os07g0438800	LOC_Os07g25710	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
OsPHR2	Os07g0438800	LOC_Os07g25710	transcription factor	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	The transcript abundance of OsPAP10a is specifically induced by Pi deficiency and is controlled by OsPHR2, the central transcription factor controlling Pi homeostasis
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	Suppression of OsSPX1 by RNA interference resulted in severe signs of toxicity caused by the over-accumulation of Pi, similar to that found in OsPHR2 (phosphate starvation response transcription factor 2) overexpressors and pho2 (phosphate-responsive mutant 2)
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate	OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.)	Six phosphate starvation-induced genes (PSIs) were less induced by -Pi in osarf16 and these trends were similar to a knockdown mutant of OsPHR2 or AtPHR1, which was a key regulator under -Pi
OsPHR2	Os07g0438800	LOC_Os07g25710	transcription factor	Involvement of OsSPX1 in phosphate homeostasis in rice	Suppression of OsSPX1 by RNA interference resulted in severe signs of toxicity caused by the over-accumulation of Pi, similar to that found in OsPHR2 (phosphate starvation response transcription factor 2) overexpressors and pho2 (phosphate-responsive mutant 2)
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants
OsPHR2	Os07g0438800	LOC_Os07g25710	growth	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	Some mutants screened from ethyl methanesulfonate (EMS)-mutagenized M2 population of OsPHR2 overexpression transgenic line removed the growth inhibition, indicating that some unknown factors are crucial for Pi utilization or plant growth under the regulation of OsPHR2
OsPHR2	Os07g0438800	LOC_Os07g25710	homeostasis	Overexpression of OsPAP10a, a root-associated acid phosphatase, increased extracellular organic phosphorus utilization in rice	The transcript abundance of OsPAP10a is specifically induced by Pi deficiency and is controlled by OsPHR2, the central transcription factor controlling Pi homeostasis
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPHR2	Os07g0438800	LOC_Os07g25710	root architecture	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	Under Pi-sufficient conditions, overexpression of OsPHR2 mimics Pi-starvation stress in rice with enhanced root elongation and proliferated root hair growth, suggesting the involvement of OsPHR2 in Pi-dependent root architecture alteration by both systematic and local pathways
OsPHR2	Os07g0438800	LOC_Os07g25710	root hair	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants	Under Pi-sufficient conditions, overexpression of OsPHR2 mimics Pi-starvation stress in rice with enhanced root elongation and proliferated root hair growth, suggesting the involvement of OsPHR2 in Pi-dependent root architecture alteration by both systematic and local pathways
OsPHR2	Os07g0438800	LOC_Os07g25710	homeostasis	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	Transgenic plants with overexpression and repression of OsPHR1 and OsPHR2, respectively, were used for investigation of roles of the genes in Pi-signaling pathway and Pi homeostasis under Pi-sufficient and deficient conditions
OsPHR2	Os07g0438800	LOC_Os07g25710	homeostasis	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)
OsPHR2	Os07g0438800	LOC_Os07g25710	root hair	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	The results showed that both of the genes are involved in the Pi-signaling pathway, while overexpression of OsPHR2 mimics Pi-starvation stress with enhanced root elongation and proliferated root hairs, and results in the excessive accumulation of Pi in shoots under Pi-sufficient conditions
OsPHR2	Os07g0438800	LOC_Os07g25710	root hair	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	OsPHR2 regulated proliferation of root hair growth and root elongation suggests that OsPHR2 is involved in both systematic and local Pi-signaling pathways
OsPHR2	Os07g0438800	LOC_Os07g25710	root hair	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)	Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.)
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate starvation response	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate starvation	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
OsPHR2	Os07g0438800	LOC_Os07g25710	Pi	SPX proteins regulate Pi homeostasis and signaling in different subcellular level.	AtPHR1 in Arabidopsis and OsPHR2 in rice are central regulators of Pi signaling, which regulates the expression of phosphate starvation-induced (PSI) genes by binding to the P1BS elements in the promoter of PSI genes
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate	SPX proteins regulate Pi homeostasis and signaling in different subcellular level.	AtPHR1 in Arabidopsis and OsPHR2 in rice are central regulators of Pi signaling, which regulates the expression of phosphate starvation-induced (PSI) genes by binding to the P1BS elements in the promoter of PSI genes
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	SPX proteins regulate Pi homeostasis and signaling in different subcellular level.	AtPHR1 in Arabidopsis and OsPHR2 in rice are central regulators of Pi signaling, which regulates the expression of phosphate starvation-induced (PSI) genes by binding to the P1BS elements in the promoter of PSI genes
OsPHR2	Os07g0438800	LOC_Os07g25710	Pi signaling	SPX proteins regulate Pi homeostasis and signaling in different subcellular level.	AtPHR1 in Arabidopsis and OsPHR2 in rice are central regulators of Pi signaling, which regulates the expression of phosphate starvation-induced (PSI) genes by binding to the P1BS elements in the promoter of PSI genes
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate starvation	SPX proteins regulate Pi homeostasis and signaling in different subcellular level.	AtPHR1 in Arabidopsis and OsPHR2 in rice are central regulators of Pi signaling, which regulates the expression of phosphate starvation-induced (PSI) genes by binding to the P1BS elements in the promoter of PSI genes
OsPHR2	Os07g0438800	LOC_Os07g25710	Pi	Phosphate-Starvation-Inducible S-Like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay	 The 2-kb promoter region of all OsRNS genes with inducible expression patterns under Pi deficiency contains a high frequency of P1BS cis-acting regulatory element (CRE) known as the OsPHR2 binding site, suggesting that the OsRNS family is likely to be controlled by OsPHR2
OsPHR2	Os07g0438800	LOC_Os07g25710	 pi 	Phosphate-Starvation-Inducible S-Like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay	 The 2-kb promoter region of all OsRNS genes with inducible expression patterns under Pi deficiency contains a high frequency of P1BS cis-acting regulatory element (CRE) known as the OsPHR2 binding site, suggesting that the OsRNS family is likely to be controlled by OsPHR2
OsPHR2	Os07g0438800	LOC_Os07g25710	resistance	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae 	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae 
OsPHR2	Os07g0438800	LOC_Os07g25710	resistance	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae 	 Molecular analyses and infection studies using OsPHR2-Ov1 and phr2 mutants further demonstrated that OsPHR2 enhances antibacterial resistance via transcriptional regulation of OsMYC2 expression, indicating a positive role of OsPHR2-OsMYC2 crosstalk in modulating the OsMYC2 signaling and Xoo infection
OsPHR2	Os07g0438800	LOC_Os07g25710	 xoo 	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae 	 Molecular analyses and infection studies using OsPHR2-Ov1 and phr2 mutants further demonstrated that OsPHR2 enhances antibacterial resistance via transcriptional regulation of OsMYC2 expression, indicating a positive role of OsPHR2-OsMYC2 crosstalk in modulating the OsMYC2 signaling and Xoo infection
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae 	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae 
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphate starvation	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae 	OsPHR2 modulates phosphate starvation-induced OsMYC2 signaling and resistance to Xanthomonas oryzae pv. oryzae 
OsPHR2	Os07g0438800	LOC_Os07g25710	root	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.	 Analysis of the root characteristics showed that the transgenic expression of OsPHR2 increased the maximum root length, total root length, root-to-shoot ratio, and root volume under the conditions of P deficiency or low P
OsPHR2	Os07g0438800	LOC_Os07g25710	stems	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.	 From the jointing to filling stage, OsPHR2 was mainly expressed in the roots, followed by the leaves, with a low expression level in detected the tassels and stems
OsPHR2	Os07g0438800	LOC_Os07g25710	seedling	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.	 OsPHR2 was mainly expressed in the leaves at the seedling stage
OsPHR2	Os07g0438800	LOC_Os07g25710	yield	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.
OsPHR2	Os07g0438800	LOC_Os07g25710	yield	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.	 Thus, the transgenic expression of OsPHR2 could increase P uptake and yield in wheat, but the effect was more prominent under low P conditions
OsPHR2	Os07g0438800	LOC_Os07g25710	phosphorus	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.
OsPHR2	Os07g0438800	LOC_Os07g25710	root length	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.	 Analysis of the root characteristics showed that the transgenic expression of OsPHR2 increased the maximum root length, total root length, root-to-shoot ratio, and root volume under the conditions of P deficiency or low P
OsPHR3	Os02g0139000	LOC_Os02g04640	growth	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	Furthermore, unlike OsPHR2-overexpressing lines, which exhibited growth retardation under normal or Pi-deficient conditions, OsPHR3-overexpressing plants exhibited significant tolerance to low Pi stress but normal growth rates under normal Pi conditions, suggesting that OsPHR3 would be useful for molecular breeding to improve Pi uptake/use efficiency under phosphate-deficient conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	tolerance	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	Furthermore, unlike OsPHR2-overexpressing lines, which exhibited growth retardation under normal or Pi-deficient conditions, OsPHR3-overexpressing plants exhibited significant tolerance to low Pi stress but normal growth rates under normal Pi conditions, suggesting that OsPHR3 would be useful for molecular breeding to improve Pi uptake/use efficiency under phosphate-deficient conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	stress	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	Furthermore, unlike OsPHR2-overexpressing lines, which exhibited growth retardation under normal or Pi-deficient conditions, OsPHR3-overexpressing plants exhibited significant tolerance to low Pi stress but normal growth rates under normal Pi conditions, suggesting that OsPHR3 would be useful for molecular breeding to improve Pi uptake/use efficiency under phosphate-deficient conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	homeostasis	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	We propose that OsPHR1, OsPHR2 and OsPHR3 form a network and play diverse roles in regulating Pi signaling and homeostasis in rice
OsPHR3	Os02g0139000	LOC_Os02g04640	breeding	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	Furthermore, unlike OsPHR2-overexpressing lines, which exhibited growth retardation under normal or Pi-deficient conditions, OsPHR3-overexpressing plants exhibited significant tolerance to low Pi stress but normal growth rates under normal Pi conditions, suggesting that OsPHR3 would be useful for molecular breeding to improve Pi uptake/use efficiency under phosphate-deficient conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	Pi	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	Furthermore, unlike OsPHR2-overexpressing lines, which exhibited growth retardation under normal or Pi-deficient conditions, OsPHR3-overexpressing plants exhibited significant tolerance to low Pi stress but normal growth rates under normal Pi conditions, suggesting that OsPHR3 would be useful for molecular breeding to improve Pi uptake/use efficiency under phosphate-deficient conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	Pi	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	We propose that OsPHR1, OsPHR2 and OsPHR3 form a network and play diverse roles in regulating Pi signaling and homeostasis in rice
OsPHR3	Os02g0139000	LOC_Os02g04640	pi	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	Furthermore, unlike OsPHR2-overexpressing lines, which exhibited growth retardation under normal or Pi-deficient conditions, OsPHR3-overexpressing plants exhibited significant tolerance to low Pi stress but normal growth rates under normal Pi conditions, suggesting that OsPHR3 would be useful for molecular breeding to improve Pi uptake/use efficiency under phosphate-deficient conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	pi	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	We propose that OsPHR1, OsPHR2 and OsPHR3 form a network and play diverse roles in regulating Pi signaling and homeostasis in rice
OsPHR3	Os02g0139000	LOC_Os02g04640	growth rate	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	Furthermore, unlike OsPHR2-overexpressing lines, which exhibited growth retardation under normal or Pi-deficient conditions, OsPHR3-overexpressing plants exhibited significant tolerance to low Pi stress but normal growth rates under normal Pi conditions, suggesting that OsPHR3 would be useful for molecular breeding to improve Pi uptake/use efficiency under phosphate-deficient conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	Pi uptake	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	Furthermore, unlike OsPHR2-overexpressing lines, which exhibited growth retardation under normal or Pi-deficient conditions, OsPHR3-overexpressing plants exhibited significant tolerance to low Pi stress but normal growth rates under normal Pi conditions, suggesting that OsPHR3 would be useful for molecular breeding to improve Pi uptake/use efficiency under phosphate-deficient conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	Pi signaling	Integrative comparison of the role of the PHR1 subfamily in phosphate signaling and homeostasis in rice.	We propose that OsPHR1, OsPHR2 and OsPHR3 form a network and play diverse roles in regulating Pi signaling and homeostasis in rice
OsPHR3	Os02g0139000	LOC_Os02g04640	nitrogen	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	OsPHR3 affects the traits governing nitrogen homeostasis in rice.
OsPHR3	Os02g0139000	LOC_Os02g04640	root	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	During vegetative growth phase, compared with the wild-type, OsPHR3 mutants showed significant variations in the adventitious root development, influx rates of 15N-NO3- and 15N-NH4+, concentrations of total N, NO3- and NH4+ in different tissues, and the relative expression levels of OsNRT1
OsPHR3	Os02g0139000	LOC_Os02g04640	growth	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	During vegetative growth phase, compared with the wild-type, OsPHR3 mutants showed significant variations in the adventitious root development, influx rates of 15N-NO3- and 15N-NH4+, concentrations of total N, NO3- and NH4+ in different tissues, and the relative expression levels of OsNRT1
OsPHR3	Os02g0139000	LOC_Os02g04640	growth	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	The effects of the mutation in OsPHR3 was also explicit on the seed-set and grain yield during growth in a pot soil
OsPHR3	Os02g0139000	LOC_Os02g04640	grain	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	The effects of the mutation in OsPHR3 was also explicit on the seed-set and grain yield during growth in a pot soil
OsPHR3	Os02g0139000	LOC_Os02g04640	grain yield	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	The effects of the mutation in OsPHR3 was also explicit on the seed-set and grain yield during growth in a pot soil
OsPHR3	Os02g0139000	LOC_Os02g04640	yield	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	The effects of the mutation in OsPHR3 was also explicit on the seed-set and grain yield during growth in a pot soil
OsPHR3	Os02g0139000	LOC_Os02g04640	vegetative	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	During vegetative growth phase, compared with the wild-type, OsPHR3 mutants showed significant variations in the adventitious root development, influx rates of 15N-NO3- and 15N-NH4+, concentrations of total N, NO3- and NH4+ in different tissues, and the relative expression levels of OsNRT1
OsPHR3	Os02g0139000	LOC_Os02g04640	root development	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	During vegetative growth phase, compared with the wild-type, OsPHR3 mutants showed significant variations in the adventitious root development, influx rates of 15N-NO3- and 15N-NH4+, concentrations of total N, NO3- and NH4+ in different tissues, and the relative expression levels of OsNRT1
OsPHR3	Os02g0139000	LOC_Os02g04640	homeostasis	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	OsPHR3 affects the traits governing nitrogen homeostasis in rice.
OsPHR3	Os02g0139000	LOC_Os02g04640	homeostasis	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	Here the role of OsPHR3 was examined in regulating the homeostasis of N under different Pi regimes
OsPHR3	Os02g0139000	LOC_Os02g04640	homeostasis	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	OsPHR3 plays a pivotal role in regulating the homeostasis of N independent of Pi availability
OsPHR3	Os02g0139000	LOC_Os02g04640	adventitious root	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	During vegetative growth phase, compared with the wild-type, OsPHR3 mutants showed significant variations in the adventitious root development, influx rates of 15N-NO3- and 15N-NH4+, concentrations of total N, NO3- and NH4+ in different tissues, and the relative expression levels of OsNRT1
OsPHR3	Os02g0139000	LOC_Os02g04640	Pi	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	Here the role of OsPHR3 was examined in regulating the homeostasis of N under different Pi regimes
OsPHR3	Os02g0139000	LOC_Os02g04640	Pi	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	OsPHR3 plays a pivotal role in regulating the homeostasis of N independent of Pi availability
OsPHR3	Os02g0139000	LOC_Os02g04640	pi	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	Here the role of OsPHR3 was examined in regulating the homeostasis of N under different Pi regimes
OsPHR3	Os02g0139000	LOC_Os02g04640	pi	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	OsPHR3 plays a pivotal role in regulating the homeostasis of N independent of Pi availability
OsPHR3	Os02g0139000	LOC_Os02g04640	nitrogen	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition
OsPHR3	Os02g0139000	LOC_Os02g04640	growth	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition
OsPHR3	Os02g0139000	LOC_Os02g04640	grain	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	Furthermore, overexpression of OsPHR3 increased N use efficiency, 1000-grain weight and grain yield under different Pi conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	grain yield	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	Furthermore, overexpression of OsPHR3 increased N use efficiency, 1000-grain weight and grain yield under different Pi conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	yield	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	Furthermore, overexpression of OsPHR3 increased N use efficiency, 1000-grain weight and grain yield under different Pi conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	stress	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	The overexpression of OsPHR3 increased N uptake under Pi stress regimes
OsPHR3	Os02g0139000	LOC_Os02g04640	homeostasis	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	), OsPHR3 is one of the four paralogs of PHR1, which acts as a central regulator of phosphate (Pi) homeostasis, as well being involved in N homeostasis
OsPHR3	Os02g0139000	LOC_Os02g04640	grain weight	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	Furthermore, overexpression of OsPHR3 increased N use efficiency, 1000-grain weight and grain yield under different Pi conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	phosphate	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition
OsPHR3	Os02g0139000	LOC_Os02g04640	phosphate	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	), OsPHR3 is one of the four paralogs of PHR1, which acts as a central regulator of phosphate (Pi) homeostasis, as well being involved in N homeostasis
OsPHR3	Os02g0139000	LOC_Os02g04640	Pi	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	However, the functions of OsPHR3 in N utilization under different Pi conditions have yet to be fully studied
OsPHR3	Os02g0139000	LOC_Os02g04640	Pi	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	The overexpression of OsPHR3 increased N uptake under Pi stress regimes
OsPHR3	Os02g0139000	LOC_Os02g04640	Pi	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	Furthermore, overexpression of OsPHR3 increased N use efficiency, 1000-grain weight and grain yield under different Pi conditions
OsPHR3	Os02g0139000	LOC_Os02g04640	pi	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	However, the functions of OsPHR3 in N utilization under different Pi conditions have yet to be fully studied
OsPHR3	Os02g0139000	LOC_Os02g04640	pi	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	The overexpression of OsPHR3 increased N uptake under Pi stress regimes
OsPHR3	Os02g0139000	LOC_Os02g04640	pi	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition	Furthermore, overexpression of OsPHR3 increased N use efficiency, 1000-grain weight and grain yield under different Pi conditions
OsPHR4	Os06g0703900	LOC_Os06g49040	growth	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	In this study, we found that OsPHR4 is a Pi-starvation induced gene and mainly expresses in vascular tissues through all growth and development periods
OsPHR4	Os06g0703900	LOC_Os06g49040	growth	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	Besides, moderate growth retardation and repression of the Pi-starvation signaling in the OsPHR4 RNA interfering (RNAi) transgenic lines can be observed under Pi-deficient condition
OsPHR4	Os06g0703900	LOC_Os06g49040	shoot	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	Consistent with the positive role of PHR4 in regulating Pi-starvation signaling, the OsPHR4 overexpressors display higher Pi accumulation in the shoot and elevated expression of Pi-starvation induced genes under Pi-sufficient condition
OsPHR4	Os06g0703900	LOC_Os06g49040	development	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	In this study, we found that OsPHR4 is a Pi-starvation induced gene and mainly expresses in vascular tissues through all growth and development periods
OsPHR4	Os06g0703900	LOC_Os06g49040	homeostasis	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.
OsPHR4	Os06g0703900	LOC_Os06g49040	Pi	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	Consistent with the positive role of PHR4 in regulating Pi-starvation signaling, the OsPHR4 overexpressors display higher Pi accumulation in the shoot and elevated expression of Pi-starvation induced genes under Pi-sufficient condition
OsPHR4	Os06g0703900	LOC_Os06g49040	phosphate	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.
OsPHR4	Os06g0703900	LOC_Os06g49040	pi	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	Consistent with the positive role of PHR4 in regulating Pi-starvation signaling, the OsPHR4 overexpressors display higher Pi accumulation in the shoot and elevated expression of Pi-starvation induced genes under Pi-sufficient condition
OsPHR4	Os06g0703900	LOC_Os06g49040	phosphate starvation	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.
OsPHS1	Os06g0473000	LOC_Os06g27860	development	OsPHS1 is required for both male and female gamete development in rice.	OsPHS1 is required for both male and female gamete development in rice.
OsPHS1	Os06g0473000	LOC_Os06g27860	nucleus	OsPHS1 is required for both male and female gamete development in rice.	 Subcellular localization analysis demonstrated that the OsPHS1 protein is situated in the nucleus and cytoplasm
OsPHS1	Os06g0473000	LOC_Os06g27860	cytoplasm	OsPHS1 is required for both male and female gamete development in rice.	 Subcellular localization analysis demonstrated that the OsPHS1 protein is situated in the nucleus and cytoplasm
OsPHS1	Os06g0473000	LOC_Os06g27860	meiosis	OsPHS1 is required for both male and female gamete development in rice.	 Expression pattern analysis indicated that OsPHS1 expression levels were mainly expressed in panicles at the beginning of meiosis
OsPHS1	Os06g0473000	LOC_Os06g27860	homologous chromosome pairing	OsPHS1 is required for both male and female gamete development in rice.	 Taken together, our results suggest an important role for OsPHS1 in homologous chromosome pairing in both male and female gametogenesis in rice
OsPHT1	Os06g0184900	LOC_Os06g08580	tolerance	Trait variations and expression profiling of OsPHT1 gene family at the early growth-stages under phosphorus-limited conditions	To better understand the early response of genotypes to limited-phosphorus (P) conditions and the role of the phosphate transporter OsPHT1 gene family in the presence of PSTOL1, it is essential to characterize the level of tolerance in rice under limited-P conditions
OsPHT1	Os06g0184900	LOC_Os06g08580	transporter	Trait variations and expression profiling of OsPHT1 gene family at the early growth-stages under phosphorus-limited conditions	To better understand the early response of genotypes to limited-phosphorus (P) conditions and the role of the phosphate transporter OsPHT1 gene family in the presence of PSTOL1, it is essential to characterize the level of tolerance in rice under limited-P conditions
OsPHT1	Os06g0184900	LOC_Os06g08580	phosphate	Trait variations and expression profiling of OsPHT1 gene family at the early growth-stages under phosphorus-limited conditions	To better understand the early response of genotypes to limited-phosphorus (P) conditions and the role of the phosphate transporter OsPHT1 gene family in the presence of PSTOL1, it is essential to characterize the level of tolerance in rice under limited-P conditions
OsPHT1	Os06g0184900	LOC_Os06g08580	phosphate transport	Trait variations and expression profiling of OsPHT1 gene family at the early growth-stages under phosphorus-limited conditions	To better understand the early response of genotypes to limited-phosphorus (P) conditions and the role of the phosphate transporter OsPHT1 gene family in the presence of PSTOL1, it is essential to characterize the level of tolerance in rice under limited-P conditions
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	transporter	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	In this study, we show that rice (Oryza sativa) Pht1;1 (OsPT1), one of the 13 Pht1 Pi transporters in rice, was expressed abundantly and constitutively in various cell types of both roots and shoots
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	transporter	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	OsPT1 was able to complement the proton-coupled Pi transporter activities in a yeast mutant defective in Pi uptake
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	shoot	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	In this study, we show that rice (Oryza sativa) Pht1;1 (OsPT1), one of the 13 Pht1 Pi transporters in rice, was expressed abundantly and constitutively in various cell types of both roots and shoots
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	shoot	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	Transgenic plants of OsPT1 overexpression lines and RNA interference knockdown lines contained significantly higher and lower phosphorus concentrations, respectively, compared with the wild-type control in Pi-sufficient shoots
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphate	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice	OsPT1, however, was highly expressed in primary roots and leaves regardless of external phosphate concentrations
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphate	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice	This finding was confirmed histochemically using transgenic rice plants that express the GUS reporter gene under the control of the OsPT1 promoter, which exhibited high GUS activity even in the phosphate sufficient condition
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphate	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice	Furthermore, transgenic rice plants overexpressing the OsPT1 gene accumulated almost twice as much phosphate in the shoots as did wild-type plants
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphate	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphate	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	Furthermore, OsPT1 expression was strongly enhanced by the mutation of Phosphate Overaccumulator2 (OsPHO2) but not by Phosphate Starvation Response2, indicating that OsPT1 is involved in the OsPHO2-regulated Pi pathway
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphate	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	transporter	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	Considering the sequenced rice genome at hand, only the Oryza sativa phosphate transporter (OsPT) gene OsPT11 was specifically induced during the arbuscular mycorrhizal symbiosis
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	transporter	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	OsPT11 expression complemented a defect in phosphate uptake in a yeast strain mutated in its high-affinity P(i) transporter (pho84), thereby confirming its function
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphorus	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	Transgenic plants of OsPT1 overexpression lines and RNA interference knockdown lines contained significantly higher and lower phosphorus concentrations, respectively, compared with the wild-type control in Pi-sufficient shoots
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	root	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	In this study, we show that rice (Oryza sativa) Pht1;1 (OsPT1), one of the 13 Pht1 Pi transporters in rice, was expressed abundantly and constitutively in various cell types of both roots and shoots
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	pi	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	In this study, we show that rice (Oryza sativa) Pht1;1 (OsPT1), one of the 13 Pht1 Pi transporters in rice, was expressed abundantly and constitutively in various cell types of both roots and shoots
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	pi	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	OsPT1 was able to complement the proton-coupled Pi transporter activities in a yeast mutant defective in Pi uptake
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	pi	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	Furthermore, OsPT1 expression was strongly enhanced by the mutation of Phosphate Overaccumulator2 (OsPHO2) but not by Phosphate Starvation Response2, indicating that OsPT1 is involved in the OsPHO2-regulated Pi pathway
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	pi	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	These results indicate that OsPT1 is a key member of the Pht1 family involved in Pi uptake and translocation in rice under Pi-replete conditions
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	shoot	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice	Furthermore, transgenic rice plants overexpressing the OsPT1 gene accumulated almost twice as much phosphate in the shoots as did wild-type plants
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphate	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	Considering the sequenced rice genome at hand, only the Oryza sativa phosphate transporter (OsPT) gene OsPT11 was specifically induced during the arbuscular mycorrhizal symbiosis
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphate	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	OsPT11 activation was independent of the nutritional status of the plant and phosphate availability in the rhizosphere
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	phosphate	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	OsPT11 expression complemented a defect in phosphate uptake in a yeast strain mutated in its high-affinity P(i) transporter (pho84), thereby confirming its function
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	transporter	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	root	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice	OsPT1, however, was highly expressed in primary roots and leaves regardless of external phosphate concentrations
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	transporter	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice	A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	root	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	Moreover, infection of roots with the fungal pathogens Rhizoctonia solani and Fusarium moniliforme did not activate OsPT11, corroborating the high signal specificity for OsPT11 activation in the arbuscular mycorrhizal symbiosis
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	primary root	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice	OsPT1, however, was highly expressed in primary roots and leaves regardless of external phosphate concentrations
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	Pi	Phosphate-Starvation-Inducible S-Like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay	Finally, the dynamic transcriptional regulation of OsRNS genes by overexpression of OsPHR2, ospho2 mutant, and overexpression of OsPT1 lines involved in Pi signaling pathway suggests the molecular basis of OsRNS family in Pi recycling via RNA decay under Pi starvation
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	pi	Phosphate-Starvation-Inducible S-Like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay	Finally, the dynamic transcriptional regulation of OsRNS genes by overexpression of OsPHR2, ospho2 mutant, and overexpression of OsPT1 lines involved in Pi signaling pathway suggests the molecular basis of OsRNS family in Pi recycling via RNA decay under Pi starvation
OsPht1;1|OsPT1	Os03g0150600	LOC_Os03g05620	Pi signaling	Phosphate-Starvation-Inducible S-Like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay	Finally, the dynamic transcriptional regulation of OsRNS genes by overexpression of OsPHR2, ospho2 mutant, and overexpression of OsPT1 lines involved in Pi signaling pathway suggests the molecular basis of OsRNS family in Pi recycling via RNA decay under Pi starvation
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	transporter	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	We characterized the function of two rice phosphate (Pi) transporters: OsPHT1;9 (OsPT9) and OsPHT1;10 (OsPT10)
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	shoot	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Conversely, although no alterations in Pi concentration were found in OsPT9 or OsPT10 knockdown plants, a significant reduction in Pi concentration in both shoots and roots was observed in double-knockdown plants grown under both high- and low-Pi conditions
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	transporter	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	lateral root	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	OsPT9 and OsPT10 were expressed in the root epidermis, root hairs and lateral roots, with their expression being specifically induced by Pi starvation
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	OsPT9 and OsPT10 were expressed in the root epidermis, root hairs and lateral roots, with their expression being specifically induced by Pi starvation
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	High-affinity Km values for Pi transport of OsPT9 and OsPT10 were determined by yeast experiments and two-electrode voltage clamp analysis of anion transport in Xenopus oocytes expressing OsPT9 and OsPT10
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Pi uptake and Pi concentrations in transgenic plants harbouring overexpressed OsPT9 and OsPT10 were determined by Pi concentration analysis and (33) P-labelled Pi uptake rate analysis
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Conversely, although no alterations in Pi concentration were found in OsPT9 or OsPT10 knockdown plants, a significant reduction in Pi concentration in both shoots and roots was observed in double-knockdown plants grown under both high- and low-Pi conditions
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Taken together, our results suggest that OsPT9 and OsPT10 redundantly function in Pi uptake
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	root	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	OsPT9 and OsPT10 were expressed in the root epidermis, root hairs and lateral roots, with their expression being specifically induced by Pi starvation
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	root	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Conversely, although no alterations in Pi concentration were found in OsPT9 or OsPT10 knockdown plants, a significant reduction in Pi concentration in both shoots and roots was observed in double-knockdown plants grown under both high- and low-Pi conditions
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	transporter	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	We characterized the function of two rice phosphate (Pi) transporters: OsPHT1;9 (OsPT9) and OsPHT1;10 (OsPT10)
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	transporter	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	pi	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	phosphate	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	We characterized the function of two rice phosphate (Pi) transporters: OsPHT1;9 (OsPT9) and OsPHT1;10 (OsPT10)
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	phosphate	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	We characterized the function of two rice phosphate (Pi) transporters: OsPHT1;9 (OsPT9) and OsPHT1;10 (OsPT10)
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	phosphate	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice
OsPht1;10|OsPT10	Os06g0325200	LOC_Os06g21950	root hair	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	OsPT9 and OsPT10 were expressed in the root epidermis, root hairs and lateral roots, with their expression being specifically induced by Pi starvation
OsPht1;11|OsPT11	Os01g0657100	LOC_Os01g46860	transporter	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	Considering the sequenced rice genome at hand, only the Oryza sativa phosphate transporter (OsPT) gene OsPT11 was specifically induced during the arbuscular mycorrhizal symbiosis
OsPht1;11|OsPT11	Os01g0657100	LOC_Os01g46860	transporter	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	OsPT11 expression complemented a defect in phosphate uptake in a yeast strain mutated in its high-affinity P(i) transporter (pho84), thereby confirming its function
OsPht1;11|OsPT11	Os01g0657100	LOC_Os01g46860	root	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	Moreover, infection of roots with the fungal pathogens Rhizoctonia solani and Fusarium moniliforme did not activate OsPT11, corroborating the high signal specificity for OsPT11 activation in the arbuscular mycorrhizal symbiosis
OsPht1;11|OsPT11	Os01g0657100	LOC_Os01g46860	phosphate	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	Considering the sequenced rice genome at hand, only the Oryza sativa phosphate transporter (OsPT) gene OsPT11 was specifically induced during the arbuscular mycorrhizal symbiosis
OsPht1;11|OsPT11	Os01g0657100	LOC_Os01g46860	phosphate	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	OsPT11 activation was independent of the nutritional status of the plant and phosphate availability in the rhizosphere
OsPht1;11|OsPT11	Os01g0657100	LOC_Os01g46860	phosphate	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis	OsPT11 expression complemented a defect in phosphate uptake in a yeast strain mutated in its high-affinity P(i) transporter (pho84), thereby confirming its function
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	homeostasis	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	* OsPT2, the most abundantly expressed Pi transporter in the roots, is also significantly up-regulated in ltn1 and dramatically induced by Pi starvation
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	* These data strongly demonstrate that selenite and Pi share similar uptake mechanisms and that OsPT2 is involved in selenite uptake, which provides a potential strategy for breeding Se-enriched rice varieties
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Taken together, these data suggest OsPT6 plays a broad role in Pi uptake and translocation throughout the plant, whereas OsPT2 is a low-affinity Pi transporter, and functions in translocation of the stored Pi in the plant
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	shoot	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPT2 is responsible for most of the OsPHR2-mediated accumulation of excess Pi in shoots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	* OsPT2, the most abundantly expressed Pi transporter in the roots, is also significantly up-regulated in ltn1 and dramatically induced by Pi starvation
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	Expression of OsPT2 (phosphate transporter 2) and OsPT8 was significantly induced in OsSPX1-RNAi (OsSPX1-Ri) plants, suggesting that over-accumulation of Pi in OsSPX1-Ri plants results from an increase in Pi transport
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	shoot	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	In transgenic rice, the knock-down of either OsPT2 or OsPT6 expression by RNA interference significantly decreased both the uptake and the long-distance transport of Pi from roots to shoots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	grain	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	Se content in rice grains also increased significantly in OsPT2-overexpressing plants
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	breeding	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	* These data strongly demonstrate that selenite and Pi share similar uptake mechanisms and that OsPT2 is involved in selenite uptake, which provides a potential strategy for breeding Se-enriched rice varieties
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPT2 is responsible for most of the OsPHR2-mediated accumulation of excess Pi in shoots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	Involvement of OsSPX1 in phosphate homeostasis in rice	Expression of OsPT2 (phosphate transporter 2) and OsPT8 was significantly induced in OsSPX1-RNAi (OsSPX1-Ri) plants, suggesting that over-accumulation of Pi in OsSPX1-Ri plants results from an increase in Pi transport
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	OsPT6, but not OsPT2, was able to complement a yeast Pi uptake mutant in the high-affinity concentration range
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Xenopus oocytes injected with OsPT2 mRNA showed increased Pi accumulation and a Pi-elicited depolarization of the cell membrane electrical potential, when supplied with mM external concentrations
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Both results show that OsPT2 mediated the uptake of Pi in oocytes
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	In transgenic rice, the knock-down of either OsPT2 or OsPT6 expression by RNA interference significantly decreased both the uptake and the long-distance transport of Pi from roots to shoots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Taken together, these data suggest OsPT6 plays a broad role in Pi uptake and translocation throughout the plant, whereas OsPT2 is a low-affinity Pi transporter, and functions in translocation of the stored Pi in the plant
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Here we report that OsPHR2 positively regulates the low-affinity Pi transporter gene OsPT2 by physical interaction and upstream regulation of OsPHO2 in roots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the regulation on expression of OsPT2 by OsPHR2 and the accumulation of excess shoot Pi, but it does not suppress induction of OsPT2 or the accumulation of excessive shoot Pi in the Ospho2 mutant
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	The data indicate that mutation of OsPHF1 results in the endoplasmic reticulum retention of the low-affinity Pi transporter OsPT2 and high-affinity Pi transporter OsPT8
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	root	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	* OsPT2, the most abundantly expressed Pi transporter in the roots, is also significantly up-regulated in ltn1 and dramatically induced by Pi starvation
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Involvement of OsSPX1 in phosphate homeostasis in rice	Expression of OsPT2 (phosphate transporter 2) and OsPT8 was significantly induced in OsSPX1-RNAi (OsSPX1-Ri) plants, suggesting that over-accumulation of Pi in OsSPX1-Ri plants results from an increase in Pi transport
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	lateral root	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	By using transgenic rice plants expressing the GUS reporter gene, driven by their promoters, we detected that OsPT2 was localized exclusively in the stele of primary and lateral roots, whereas OsPT6 was expressed in both epidermal and cortical cells of the younger primary and lateral roots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	root	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Here we report that OsPHR2 positively regulates the low-affinity Pi transporter gene OsPT2 by physical interaction and upstream regulation of OsPHO2 in roots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	root	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Here we report that OsPHR2 positively regulates the low-affinity Pi transporter gene OsPT2 by physical interaction and upstream regulation of OsPHO2 in roots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsPT2 is responsible for most of the OsPHR2-mediated accumulation of excess shoot Pi
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the regulation on expression of OsPT2 by OsPHR2 and the accumulation of excess shoot Pi, but it does not suppress induction of OsPT2 or the accumulation of excessive shoot Pi in the Ospho2 mutant
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	The data indicate that mutation of OsPHF1 results in the endoplasmic reticulum retention of the low-affinity Pi transporter OsPT2 and high-affinity Pi transporter OsPT8
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	root	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	By using transgenic rice plants expressing the GUS reporter gene, driven by their promoters, we detected that OsPT2 was localized exclusively in the stele of primary and lateral roots, whereas OsPT6 was expressed in both epidermal and cortical cells of the younger primary and lateral roots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	root	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation	In transgenic rice, the knock-down of either OsPT2 or OsPT6 expression by RNA interference significantly decreased both the uptake and the long-distance transport of Pi from roots to shoots
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	nitrogen	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	cell wall	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2	What's more, the phosphate transporter gene OsPT2 is upregulated under NH4+ supplementation and is therefore involved in the stimulated P remobilization
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2	What's more, the phosphate transporter gene OsPT2 is upregulated under NH4+ supplementation and is therefore involved in the stimulated P remobilization
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphorus	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate transport	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate transport	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2	What's more, the phosphate transporter gene OsPT2 is upregulated under NH4+ supplementation and is therefore involved in the stimulated P remobilization
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	seedlings	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.	 Constitutive over-expression of OsPT2 may have negative effects on the growth of rice seedlings under high Pi condition
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	seedlings	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.	 Under Pi-sufficient condition, there were a series of symptoms of phosphorus toxicity in the shoots of OsPT2 over-expressing (Ov-OsPT2) seedlings
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	root	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	growth	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.	 Constitutive over-expression of OsPT2 may have negative effects on the growth of rice seedlings under high Pi condition
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	Pi	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.	 Constitutive over-expression of OsPT2 may have negative effects on the growth of rice seedlings under high Pi condition
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.	 Constitutive over-expression of OsPT2 may have negative effects on the growth of rice seedlings under high Pi condition
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphorus	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.	 Under Pi-sufficient condition, there were a series of symptoms of phosphorus toxicity in the shoots of OsPT2 over-expressing (Ov-OsPT2) seedlings
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	Pi	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	 Rice plants overexpressing OsPP95 reduced OsPT8 phosphorylation and promoted OsPT2 and OsPT8 trafficking from the ER to the PM, resulting in Pi accumulation
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphatase	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	 We demonstrate that the protein phosphatase type 2C (PP2C) protein phosphatase OsPP95 interacts with OsPT2 and OsPT8 and dephosphorylates OsPT8 at Ser-517
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	 Rice plants overexpressing OsPP95 reduced OsPT8 phosphorylation and promoted OsPT2 and OsPT8 trafficking from the ER to the PM, resulting in Pi accumulation
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	protein phosphatase	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	 We demonstrate that the protein phosphatase type 2C (PP2C) protein phosphatase OsPP95 interacts with OsPT2 and OsPT8 and dephosphorylates OsPT8 at Ser-517
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	growth	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	 High Zn supply triggered P starvation signal in root, thereafter increased the activities of both root-endogenous and -secreted acid phosphatase to release more Pi, and induced the expression OsPT2 and OsPT8 to uptake more P for plant growth
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	yield	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	 Our results showed that high level of Zn decreased the rice biomass and yield production, and inhibited the root-to-shoot translocation and distribution of P into new leaves by down-regulating P transporter genes OsPT2 and OsPT8 in shoot, which was controlled by OsPHR2-OsmiR399-OsPHO2 module
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transporter	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	 Our results showed that high level of Zn decreased the rice biomass and yield production, and inhibited the root-to-shoot translocation and distribution of P into new leaves by down-regulating P transporter genes OsPT2 and OsPT8 in shoot, which was controlled by OsPHR2-OsmiR399-OsPHO2 module
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	plant growth	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	 High Zn supply triggered P starvation signal in root, thereafter increased the activities of both root-endogenous and -secreted acid phosphatase to release more Pi, and induced the expression OsPT2 and OsPT8 to uptake more P for plant growth
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	biomass	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	 Our results showed that high level of Zn decreased the rice biomass and yield production, and inhibited the root-to-shoot translocation and distribution of P into new leaves by down-regulating P transporter genes OsPT2 and OsPT8 in shoot, which was controlled by OsPHR2-OsmiR399-OsPHO2 module
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphatase	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	 High Zn supply triggered P starvation signal in root, thereafter increased the activities of both root-endogenous and -secreted acid phosphatase to release more Pi, and induced the expression OsPT2 and OsPT8 to uptake more P for plant growth
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	transcription factor	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	phosphate	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	Pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Genetic analysis showed that OsPHT1;2 was responsible for the increased Pi accumulation in oswrky10
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Genetic analysis showed that OsPHT1;2 was responsible for the increased Pi accumulation in oswrky10
OsPht1;2|OsPT2	Os03g0150800	LOC_Os03g05640	 pi 	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Genetic analysis showed that OsPHT1;2 was responsible for the increased Pi accumulation in oswrky10
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	pi	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	leaf	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	OsPHT1;3 was directly regulated by OsPHR2 and, in response to Pi starvation, showed enhanced expression in young leaf blades and shoot basal regions and even more so in roots and old leaf blades
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	vascular bundle	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	Moreover, in basal nodes, the expression of OsPHT1;3 was restricted to the phloem of regular vascular bundles and enlarged vascular bundles
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	shoot	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	OsPHT1;3 was directly regulated by OsPHR2 and, in response to Pi starvation, showed enhanced expression in young leaf blades and shoot basal regions and even more so in roots and old leaf blades
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	phloem	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	Moreover, in basal nodes, the expression of OsPHT1;3 was restricted to the phloem of regular vascular bundles and enlarged vascular bundles
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	phosphate	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	Pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	OsPHT1;3 was directly regulated by OsPHR2 and, in response to Pi starvation, showed enhanced expression in young leaf blades and shoot basal regions and even more so in roots and old leaf blades
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	Pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	OsPHT1;3 was able to complement a yeast mutant strain defective in five Pi transporters and mediate Pi influx in Xenopus laevis oocytes
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	Pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	Overexpression of OsPHT1;3 led to increased Pi concentration both in roots and shoots
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	Pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	However, unlike that reported for other known OsPHT1 members which facilitate Pi uptake at relatively higher Pi levels, mutation of OsPHT1;3 impaired Pi uptake and root-to-shoot Pi translocation only when external Pi concentration was below 5 M
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	Pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	An isotope labeling experiment with 32P showed that ospht1;3 mutant lines were impaired in remobilization of Pi from source to sink leaves
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	Pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	Taken together, our results indicate that OsPHT1;3 acts as a crucial factor for Pi acquisition, root-to-shoot Pi translocation, and redistribution of phosphorus in plants growing in environments with extremely low Pi levels
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	OsPHT1;3 was directly regulated by OsPHR2 and, in response to Pi starvation, showed enhanced expression in young leaf blades and shoot basal regions and even more so in roots and old leaf blades
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	OsPHT1;3 was able to complement a yeast mutant strain defective in five Pi transporters and mediate Pi influx in Xenopus laevis oocytes
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	Overexpression of OsPHT1;3 led to increased Pi concentration both in roots and shoots
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	However, unlike that reported for other known OsPHT1 members which facilitate Pi uptake at relatively higher Pi levels, mutation of OsPHT1;3 impaired Pi uptake and root-to-shoot Pi translocation only when external Pi concentration was below 5 M
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	An isotope labeling experiment with 32P showed that ospht1;3 mutant lines were impaired in remobilization of Pi from source to sink leaves
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	pi	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	Taken together, our results indicate that OsPHT1;3 acts as a crucial factor for Pi acquisition, root-to-shoot Pi translocation, and redistribution of phosphorus in plants growing in environments with extremely low Pi levels
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	phosphorus	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	Taken together, our results indicate that OsPHT1;3 acts as a crucial factor for Pi acquisition, root-to-shoot Pi translocation, and redistribution of phosphorus in plants growing in environments with extremely low Pi levels
OsPht1;3|OsPT3	Os10g0444600	LOC_Os10g30770	Pi uptake	OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	However, unlike that reported for other known OsPHT1 members which facilitate Pi uptake at relatively higher Pi levels, mutation of OsPHT1;3 impaired Pi uptake and root-to-shoot Pi translocation only when external Pi concentration was below 5 M
OsPht1;4|OsPT4	Os04g0186400	LOC_Os04g10750	development	Involvement of OsPht1;4 in phosphate acquisition, and mobilization facilitates embryo development in rice.	Involvement of OsPht1;4 in phosphate acquisition, and mobilization facilitates embryo development in rice.
OsPht1;4|OsPT4	Os04g0186400	LOC_Os04g10750	phosphate	Involvement of OsPht1;4 in phosphate acquisition, and mobilization facilitates embryo development in rice.	Involvement of OsPht1;4 in phosphate acquisition, and mobilization facilitates embryo development in rice.
OsPht1;4|OsPT4	Os04g0186400	LOC_Os04g10750	phosphate acquisition	Involvement of OsPht1;4 in phosphate acquisition, and mobilization facilitates embryo development in rice.	Involvement of OsPht1;4 in phosphate acquisition, and mobilization facilitates embryo development in rice.
OsPht1;4|OsPT4	Os04g0186400	LOC_Os04g10750	homeostasis	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.
OsPht1;4|OsPT4	Os04g0186400	LOC_Os04g10750	transporter	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.
OsPht1;4|OsPT4	Os04g0186400	LOC_Os04g10750	phosphate	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.
OsPht1;4|OsPT4	Os04g0186400	LOC_Os04g10750	phosphate transport	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.
OsPht1;4|OsPT4	Os04g0186400	LOC_Os04g10750	phosphate homeostasis	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	vascular bundle	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 A further fine-localization analysis by immunostaining showed that OsPHT1;7 expression was restricted in the vascular bundle sheath and phloem of source leaves and enlarged-vascular bundles of nodes
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	growth	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Taken together, our results provide evidence that OsPHT1;7 is a crucial Pi transporter for Pi transport and recycling within rice plants, stimulating both the vegetative and reproductive growth
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	grain	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Moreover, the germination of pollen grains was significantly inhibited upon OsPHT1;7 mutation, leading to a�<U+383C><U+3E39>&gt;�<U+383C><U+3E39>80% decrease in seed-setting rate and grain yield
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	pollen	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Moreover, the germination of pollen grains was significantly inhibited upon OsPHT1;7 mutation, leading to a�<U+383C><U+3E39>&gt;�<U+383C><U+3E39>80% decrease in seed-setting rate and grain yield
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	anther	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	sheath	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 A further fine-localization analysis by immunostaining showed that OsPHT1;7 expression was restricted in the vascular bundle sheath and phloem of source leaves and enlarged-vascular bundles of nodes
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	grain yield	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Moreover, the germination of pollen grains was significantly inhibited upon OsPHT1;7 mutation, leading to a�<U+383C><U+3E39>&gt;�<U+383C><U+3E39>80% decrease in seed-setting rate and grain yield
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	yield	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Moreover, the germination of pollen grains was significantly inhibited upon OsPHT1;7 mutation, leading to a�<U+383C><U+3E39>&gt;�<U+383C><U+3E39>80% decrease in seed-setting rate and grain yield
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	vegetative	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Taken together, our results provide evidence that OsPHT1;7 is a crucial Pi transporter for Pi transport and recycling within rice plants, stimulating both the vegetative and reproductive growth
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	reproductive	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Taken together, our results provide evidence that OsPHT1;7 is a crucial Pi transporter for Pi transport and recycling within rice plants, stimulating both the vegetative and reproductive growth
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	transporter	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	transporter	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Taken together, our results provide evidence that OsPHT1;7 is a crucial Pi transporter for Pi transport and recycling within rice plants, stimulating both the vegetative and reproductive growth
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	phloem	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 A further fine-localization analysis by immunostaining showed that OsPHT1;7 expression was restricted in the vascular bundle sheath and phloem of source leaves and enlarged-vascular bundles of nodes
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	anther development	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	reproductive growth	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Taken together, our results provide evidence that OsPHT1;7 is a crucial Pi transporter for Pi transport and recycling within rice plants, stimulating both the vegetative and reproductive growth
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	phosphate	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	phosphorus	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	Pi	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Yeast complementation and Xenopus laevis oocyte assay demonstrated that OsPHT1;7 could mediate Pi transport
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	Pi	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Taken together, our results provide evidence that OsPHT1;7 is a crucial Pi transporter for Pi transport and recycling within rice plants, stimulating both the vegetative and reproductive growth
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	pi	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Yeast complementation and Xenopus laevis oocyte assay demonstrated that OsPHT1;7 could mediate Pi transport
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	pi	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Taken together, our results provide evidence that OsPHT1;7 is a crucial Pi transporter for Pi transport and recycling within rice plants, stimulating both the vegetative and reproductive growth
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	phosphate transport	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	 pi 	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Yeast complementation and Xenopus laevis oocyte assay demonstrated that OsPHT1;7 could mediate Pi transport
OsPht1;7|OsPT7	Os03g0136400	LOC_Os03g04360	 pi 	The Rice Phosphate Transporter OsPHT1;7 Plays a Dual Role in Phosphorus Redistribution and Anther Development.	 Taken together, our results provide evidence that OsPHT1;7 is a crucial Pi transporter for Pi transport and recycling within rice plants, stimulating both the vegetative and reproductive growth
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphorus	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Moreover, OsPT8 suppression resulted in an increase of phosphorus content in the panicle axis and in a decrease of phosphorus content in unfilled grain hulls, accompanied by lower seed-setting rate
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	root	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transporter	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transporter	Involvement of OsSPX1 in phosphate homeostasis in rice	Expression of OsPT2 (phosphate transporter 2) and OsPT8 was significantly induced in OsSPX1-RNAi (OsSPX1-Ri) plants, suggesting that over-accumulation of Pi in OsSPX1-Ri plants results from an increase in Pi transport
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	seed	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Expression of a beta-glucuronidase and green fluorescent protein reporter gene driven by the OsPT8 promoter showed that OsPT8 is expressed in various tissue organs from roots to seeds independent of Pi supply
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	seed	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Moreover, OsPT8 suppression resulted in an increase of phosphorus content in the panicle axis and in a decrease of phosphorus content in unfilled grain hulls, accompanied by lower seed-setting rate
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	shoot	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	root	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Expression of a beta-glucuronidase and green fluorescent protein reporter gene driven by the OsPT8 promoter showed that OsPT8 is expressed in various tissue organs from roots to seeds independent of Pi supply
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	root	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Overexpression of OsPT8 resulted in excessive Pi in both roots and shoots and Pi toxic symptoms under the high-Pi supply condition
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transporter	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	panicle	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Moreover, OsPT8 suppression resulted in an increase of phosphorus content in the panicle axis and in a decrease of phosphorus content in unfilled grain hulls, accompanied by lower seed-setting rate
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transporter	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	The data indicate that mutation of OsPHF1 results in the endoplasmic reticulum retention of the low-affinity Pi transporter OsPT2 and high-affinity Pi transporter OsPT8
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	Involvement of OsSPX1 in phosphate homeostasis in rice	Expression of OsPT2 (phosphate transporter 2) and OsPT8 was significantly induced in OsSPX1-RNAi (OsSPX1-Ri) plants, suggesting that over-accumulation of Pi in OsSPX1-Ri plants results from an increase in Pi transport
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	homeostasis	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Altogether, our data suggest that OsPT8 is involved in Pi homeostasis in rice and is critical for plant growth and development
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transcription factor	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Moreover, expression of OsPT2, which encodes a low-affinity Pi transporter, was up-regulated in OsMYB2P-1-overexpressing plants under Pi-sufficient conditions, whereas expression of the high-affinity Pi transporters OsPT6, OsPT8, and OsPT10 was up-regulated by overexpression of OsMYB2P-1 under Pi-deficient conditions, suggesting that OsMYB2P-1 may act as a Pi-dependent regulator in controlling the expression of Pi transporters
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transporter	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Expression of a beta-glucuronidase and green fluorescent protein reporter gene driven by the OsPT8 promoter showed that OsPT8 is expressed in various tissue organs from roots to seeds independent of Pi supply
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	OsPT8 was able to complement a yeast Pi-uptake mutant and increase Pi accumulation of Xenopus laevis oocytes when supplied with micromolar (33)Pi concentrations at their external solution, indicating that it has a high affinity for Pi transport
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Overexpression of OsPT8 resulted in excessive Pi in both roots and shoots and Pi toxic symptoms under the high-Pi supply condition
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	In contrast, knockdown of OsPT8 by RNA interference decreased Pi uptake and plant growth under both high- and low-Pi conditions
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Altogether, our data suggest that OsPT8 is involved in Pi homeostasis in rice and is critical for plant growth and development
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	shoot	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Overexpression of OsPT8 resulted in excessive Pi in both roots and shoots and Pi toxic symptoms under the high-Pi supply condition
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	grain	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Moreover, OsPT8 suppression resulted in an increase of phosphorus content in the panicle axis and in a decrease of phosphorus content in unfilled grain hulls, accompanied by lower seed-setting rate
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	In hydroponic experiments, a rice mutant defective in OsPHF1 (for phosphate transporter traffic facilitator1) lost much of the ability to take up Pi and arsenate and to transport them from roots to shoots, whereas transgenic rice overexpressing either the Pi transporter OsPht1;8 (OsPT8) or the transcription factor OsPHR2 (for phosphate starvation response2) had enhanced abilities of Pi and arsenate uptake and translocation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	homeostasis	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	Expression of OsPT2 (phosphate transporter 2) and OsPT8 was significantly induced in OsSPX1-RNAi (OsSPX1-Ri) plants, suggesting that over-accumulation of Pi in OsSPX1-Ri plants results from an increase in Pi transport
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice	OsPT8 was found to have a high affinity for both Pi and arsenate, and its overexpression increased the maximum influx by 3- to 5-fold
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	growth	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	In contrast, knockdown of OsPT8 by RNA interference decreased Pi uptake and plant growth under both high- and low-Pi conditions
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	growth	The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice	Altogether, our data suggest that OsPT8 is involved in Pi homeostasis in rice and is critical for plant growth and development
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice	The data indicate that mutation of OsPHF1 results in the endoplasmic reticulum retention of the low-affinity Pi transporter OsPT2 and high-affinity Pi transporter OsPT8
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	shoot	Phosphate transporter OsPht1;8 in rice plays an important role in phosphorus redistribution from source to sink organs and allocation between embryo and endosperm of seeds.	In this study, we knocked down expression of a phosphate transporter gene OsPht1;8 (OsPT8) selectively in shoot and/or in seed endosperm by RNA-interference using RISBZ1 and GluB-1 promoter (designate these transgenic lines as SSRi and EnSRi), respectively, to characterize the role of OsPT8 in P redistribution of rice
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	seed	Phosphate transporter OsPht1;8 in rice plays an important role in phosphorus redistribution from source to sink organs and allocation between embryo and endosperm of seeds.	In this study, we knocked down expression of a phosphate transporter gene OsPht1;8 (OsPT8) selectively in shoot and/or in seed endosperm by RNA-interference using RISBZ1 and GluB-1 promoter (designate these transgenic lines as SSRi and EnSRi), respectively, to characterize the role of OsPT8 in P redistribution of rice
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	homeostasis	Phosphate transporter OsPht1;8 in rice plays an important role in phosphorus redistribution from source to sink organs and allocation between embryo and endosperm of seeds.	Taken together, our results demonstrate that OsPT8 plays a critical role in redistribution of P from source to sink organs and P homeostasis in seeds of rice
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	endosperm	Phosphate transporter OsPht1;8 in rice plays an important role in phosphorus redistribution from source to sink organs and allocation between embryo and endosperm of seeds.	In this study, we knocked down expression of a phosphate transporter gene OsPht1;8 (OsPT8) selectively in shoot and/or in seed endosperm by RNA-interference using RISBZ1 and GluB-1 promoter (designate these transgenic lines as SSRi and EnSRi), respectively, to characterize the role of OsPT8 in P redistribution of rice
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transporter	Phosphate transporter OsPht1;8 in rice plays an important role in phosphorus redistribution from source to sink organs and allocation between embryo and endosperm of seeds.	In this study, we knocked down expression of a phosphate transporter gene OsPht1;8 (OsPT8) selectively in shoot and/or in seed endosperm by RNA-interference using RISBZ1 and GluB-1 promoter (designate these transgenic lines as SSRi and EnSRi), respectively, to characterize the role of OsPT8 in P redistribution of rice
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate	Phosphate transporter OsPht1;8 in rice plays an important role in phosphorus redistribution from source to sink organs and allocation between embryo and endosperm of seeds.	In this study, we knocked down expression of a phosphate transporter gene OsPht1;8 (OsPT8) selectively in shoot and/or in seed endosperm by RNA-interference using RISBZ1 and GluB-1 promoter (designate these transgenic lines as SSRi and EnSRi), respectively, to characterize the role of OsPT8 in P redistribution of rice
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	root	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	Mutation in OsPT8 in both backgrounds decreased As(V) uptake by 33-57%, increased As(V) tolerance assayed by root elongation by &gt;100-fold, and abolished the varietal differences in As(V) uptake and tolerance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	root	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	The results show that OsPT8 plays a key role in As(V) uptake and that As(V) uptake mediated by OsPT8 exerts a profound toxic effect on root elongation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	tolerance	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	tolerance	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	Mutation in OsPT8 in both backgrounds decreased As(V) uptake by 33-57%, increased As(V) tolerance assayed by root elongation by &gt;100-fold, and abolished the varietal differences in As(V) uptake and tolerance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	tolerance	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	The results also suggest that differential OsPT8 expression explains the varietal differences in As(V) uptake and tolerance between Kasalath and Nipponbare
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	root elongation	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	Mutation in OsPT8 in both backgrounds decreased As(V) uptake by 33-57%, increased As(V) tolerance assayed by root elongation by &gt;100-fold, and abolished the varietal differences in As(V) uptake and tolerance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	root elongation	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	The results show that OsPT8 plays a key role in As(V) uptake and that As(V) uptake mediated by OsPT8 exerts a profound toxic effect on root elongation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transporter	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	Nipponbare showed 2- to 3-fold higher expression of the Pi transporter genes OsPT2 and OsPT8 than Kasalath
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	Pi	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	Nipponbare showed 2- to 3-fold higher expression of the Pi transporter genes OsPT2 and OsPT8 than Kasalath
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	Nipponbare showed 2- to 3-fold higher expression of the Pi transporter genes OsPT2 and OsPT8 than Kasalath
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	auxin	OsPht1;8, a phosphate transporter, is involved in auxin and phosphate starvation response in rice.	Here, we show that OsPht1;8 (OsPT8), a phosphate transporter, functions in both the auxin and -Pi responses in rice (Oryza sativa L
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate	OsPht1;8, a phosphate transporter, is involved in auxin and phosphate starvation response in rice.	Here, we show that OsPht1;8 (OsPT8), a phosphate transporter, functions in both the auxin and -Pi responses in rice (Oryza sativa L
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate transport	OsPht1;8, a phosphate transporter, is involved in auxin and phosphate starvation response in rice.	Here, we show that OsPht1;8 (OsPT8), a phosphate transporter, functions in both the auxin and -Pi responses in rice (Oryza sativa L
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	resistance	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	resistance	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	In this study, we identified the rice OsPT8 protein, which is a member of the phosphate transporters (PTs) Pht1 family and also plays a role in rice disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	resistance	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	Overexpression of OsPT8 suppresses rice disease resistance against the pathogens Magnaporthe oryzae and Xanthomonas oryzae pv
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	resistance	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	Accordingly, the transcription level of resistance related genes, such as PAL and PBZ1, is inhibited in plants overexpressing OsPT8 (OsPT8-OX) after inoculation with these pathogens
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	resistance	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	We also identified OsPT8 as an interactor of a rice mitogen-activated protein kinase BWMK1, which is a regulator of disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	development	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	These results demonstrate that OsPT8 regulates the transduction of Pi signaling for development and negatively regulates rice immunity
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	disease	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	disease	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	In this study, we identified the rice OsPT8 protein, which is a member of the phosphate transporters (PTs) Pht1 family and also plays a role in rice disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	disease	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	Overexpression of OsPT8 suppresses rice disease resistance against the pathogens Magnaporthe oryzae and Xanthomonas oryzae pv
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	disease	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	We also identified OsPT8 as an interactor of a rice mitogen-activated protein kinase BWMK1, which is a regulator of disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	disease resistance	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	disease resistance	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	In this study, we identified the rice OsPT8 protein, which is a member of the phosphate transporters (PTs) Pht1 family and also plays a role in rice disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	disease resistance	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	Overexpression of OsPT8 suppresses rice disease resistance against the pathogens Magnaporthe oryzae and Xanthomonas oryzae pv
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	disease resistance	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	We also identified OsPT8 as an interactor of a rice mitogen-activated protein kinase BWMK1, which is a regulator of disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	magnaporthe oryzae	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	Overexpression of OsPT8 suppresses rice disease resistance against the pathogens Magnaporthe oryzae and Xanthomonas oryzae pv
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transporter	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	R protein	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	immunity	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	These results demonstrate that OsPT8 regulates the transduction of Pi signaling for development and negatively regulates rice immunity
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	Kinase	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	We also identified OsPT8 as an interactor of a rice mitogen-activated protein kinase BWMK1, which is a regulator of disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	protein kinase	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	We also identified OsPT8 as an interactor of a rice mitogen-activated protein kinase BWMK1, which is a regulator of disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	In this study, we identified the rice OsPT8 protein, which is a member of the phosphate transporters (PTs) Pht1 family and also plays a role in rice disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	Pi	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	These results demonstrate that OsPT8 regulates the transduction of Pi signaling for development and negatively regulates rice immunity
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	These results demonstrate that OsPT8 regulates the transduction of Pi signaling for development and negatively regulates rice immunity
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	plant growth	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate transport	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphate transport	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	In this study, we identified the rice OsPT8 protein, which is a member of the phosphate transporters (PTs) Pht1 family and also plays a role in rice disease resistance
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	Pi signaling	The Rice Phosphate Transporter Protein OsPT8 Regulates Disease Resistance and Plant Growth.	These results demonstrate that OsPT8 regulates the transduction of Pi signaling for development and negatively regulates rice immunity
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	Pi	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	Rice plants overexpressing OsPP95 reduced OsPT8 phosphorylation and promoted OsPT2 and OsPT8 trafficking from the ER to the PM, resulting in Pi accumulation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphatase	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	We demonstrate that the protein phosphatase type 2C (PP2C) protein phosphatase OsPP95 interacts with OsPT2 and OsPT8 and dephosphorylates OsPT8 at Ser-517
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	pi	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	Rice plants overexpressing OsPP95 reduced OsPT8 phosphorylation and promoted OsPT2 and OsPT8 trafficking from the ER to the PM, resulting in Pi accumulation
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	protein phosphatase	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	We demonstrate that the protein phosphatase type 2C (PP2C) protein phosphatase OsPP95 interacts with OsPT2 and OsPT8 and dephosphorylates OsPT8 at Ser-517
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	growth	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	High Zn supply triggered P starvation signal in root, thereafter increased the activities of both root-endogenous and -secreted acid phosphatase to release more Pi, and induced the expression OsPT2 and OsPT8 to uptake more P for plant growth
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	yield	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	Our results showed that high level of Zn decreased the rice biomass and yield production, and inhibited the root-to-shoot translocation and distribution of P into new leaves by down-regulating P transporter genes OsPT2 and OsPT8 in shoot, which was controlled by OsPHR2-OsmiR399-OsPHO2 module
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	transporter	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	Our results showed that high level of Zn decreased the rice biomass and yield production, and inhibited the root-to-shoot translocation and distribution of P into new leaves by down-regulating P transporter genes OsPT2 and OsPT8 in shoot, which was controlled by OsPHR2-OsmiR399-OsPHO2 module
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	plant growth	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	High Zn supply triggered P starvation signal in root, thereafter increased the activities of both root-endogenous and -secreted acid phosphatase to release more Pi, and induced the expression OsPT2 and OsPT8 to uptake more P for plant growth
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	biomass	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	Our results showed that high level of Zn decreased the rice biomass and yield production, and inhibited the root-to-shoot translocation and distribution of P into new leaves by down-regulating P transporter genes OsPT2 and OsPT8 in shoot, which was controlled by OsPHR2-OsmiR399-OsPHO2 module
OsPht1;8|OsPT8	Os10g0444700	LOC_Os10g30790	phosphatase	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants	High Zn supply triggered P starvation signal in root, thereafter increased the activities of both root-endogenous and -secreted acid phosphatase to release more Pi, and induced the expression OsPT2 and OsPT8 to uptake more P for plant growth
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	shoot	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Conversely, although no alterations in Pi concentration were found in OsPT9 or OsPT10 knockdown plants, a significant reduction in Pi concentration in both shoots and roots was observed in double-knockdown plants grown under both high- and low-Pi conditions
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	OsPT9 and OsPT10 were expressed in the root epidermis, root hairs and lateral roots, with their expression being specifically induced by Pi starvation
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	High-affinity Km values for Pi transport of OsPT9 and OsPT10 were determined by yeast experiments and two-electrode voltage clamp analysis of anion transport in Xenopus oocytes expressing OsPT9 and OsPT10
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Pi uptake and Pi concentrations in transgenic plants harbouring overexpressed OsPT9 and OsPT10 were determined by Pi concentration analysis and (33) P-labelled Pi uptake rate analysis
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Conversely, although no alterations in Pi concentration were found in OsPT9 or OsPT10 knockdown plants, a significant reduction in Pi concentration in both shoots and roots was observed in double-knockdown plants grown under both high- and low-Pi conditions
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	pi	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Taken together, our results suggest that OsPT9 and OsPT10 redundantly function in Pi uptake
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	transporter	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	We characterized the function of two rice phosphate (Pi) transporters: OsPHT1;9 (OsPT9) and OsPHT1;10 (OsPT10)
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	transporter	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	transporter	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	We characterized the function of two rice phosphate (Pi) transporters: OsPHT1;9 (OsPT9) and OsPHT1;10 (OsPT10)
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	lateral root	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	OsPT9 and OsPT10 were expressed in the root epidermis, root hairs and lateral roots, with their expression being specifically induced by Pi starvation
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	phosphate	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	We characterized the function of two rice phosphate (Pi) transporters: OsPHT1;9 (OsPT9) and OsPHT1;10 (OsPT10)
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	root	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	OsPT9 and OsPT10 were expressed in the root epidermis, root hairs and lateral roots, with their expression being specifically induced by Pi starvation
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	root	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Conversely, although no alterations in Pi concentration were found in OsPT9 or OsPT10 knockdown plants, a significant reduction in Pi concentration in both shoots and roots was observed in double-knockdown plants grown under both high- and low-Pi conditions
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	phosphate	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	We characterized the function of two rice phosphate (Pi) transporters: OsPHT1;9 (OsPT9) and OsPHT1;10 (OsPT10)
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	phosphate	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice
OsPht1;9|OsPT9	Os06g0324800	LOC_Os06g21920	root hair	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice	OsPT9 and OsPT10 were expressed in the root epidermis, root hairs and lateral roots, with their expression being specifically induced by Pi starvation
OsPHT2;1	Os02g0593500	LOC_Os02g38020	chloroplast	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Cell-based assays showed that OsPHT2;1 localized to the chloroplast envelope and functioned as a low-affinity Pi transporter
OsPHT2;1	Os02g0593500	LOC_Os02g38020	growth	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	The ospht2;1 had reduced Pi accumulation, plant growth and photosynthetic rates
OsPHT2;1	Os02g0593500	LOC_Os02g38020	grain	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Furthermore, the ospht2;1 showed decreased grain yields at relatively high levels of UV-B irradiance
OsPHT2;1	Os02g0593500	LOC_Os02g38020	tolerance	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.
OsPHT2;1	Os02g0593500	LOC_Os02g38020	tolerance	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	In summary, OsPHT2;1 functions as a chloroplast-localized low-affinity Pi transporter that mediates UV tolerance and rice yields in different latitudes
OsPHT2;1	Os02g0593500	LOC_Os02g38020	grain yield	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Furthermore, the ospht2;1 showed decreased grain yields at relatively high levels of UV-B irradiance
OsPHT2;1	Os02g0593500	LOC_Os02g38020	plant growth	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	The ospht2;1 had reduced Pi accumulation, plant growth and photosynthetic rates
OsPHT2;1	Os02g0593500	LOC_Os02g38020	transporter	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.
OsPHT2;1	Os02g0593500	LOC_Os02g38020	transporter	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Cell-based assays showed that OsPHT2;1 localized to the chloroplast envelope and functioned as a low-affinity Pi transporter
OsPHT2;1	Os02g0593500	LOC_Os02g38020	transporter	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	In summary, OsPHT2;1 functions as a chloroplast-localized low-affinity Pi transporter that mediates UV tolerance and rice yields in different latitudes
OsPHT2;1	Os02g0593500	LOC_Os02g38020	phosphate	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.
OsPHT2;1	Os02g0593500	LOC_Os02g38020	stroma	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	In this study, to gain insight into the role of OsPHT2;1-mediated stroma Pi, we analyzed OsPHT2;1 function in Pi utilization and photoprotection
OsPHT2;1	Os02g0593500	LOC_Os02g38020	Pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	In this study, to gain insight into the role of OsPHT2;1-mediated stroma Pi, we analyzed OsPHT2;1 function in Pi utilization and photoprotection
OsPHT2;1	Os02g0593500	LOC_Os02g38020	Pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Our results showed that OsPHT2;1 was induced by Pi starvation and light exposure
OsPHT2;1	Os02g0593500	LOC_Os02g38020	Pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Cell-based assays showed that OsPHT2;1 localized to the chloroplast envelope and functioned as a low-affinity Pi transporter
OsPHT2;1	Os02g0593500	LOC_Os02g38020	Pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	The ospht2;1 had reduced Pi accumulation, plant growth and photosynthetic rates
OsPHT2;1	Os02g0593500	LOC_Os02g38020	Pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	In summary, OsPHT2;1 functions as a chloroplast-localized low-affinity Pi transporter that mediates UV tolerance and rice yields in different latitudes
OsPHT2;1	Os02g0593500	LOC_Os02g38020	pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	In this study, to gain insight into the role of OsPHT2;1-mediated stroma Pi, we analyzed OsPHT2;1 function in Pi utilization and photoprotection
OsPHT2;1	Os02g0593500	LOC_Os02g38020	pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Our results showed that OsPHT2;1 was induced by Pi starvation and light exposure
OsPHT2;1	Os02g0593500	LOC_Os02g38020	pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Cell-based assays showed that OsPHT2;1 localized to the chloroplast envelope and functioned as a low-affinity Pi transporter
OsPHT2;1	Os02g0593500	LOC_Os02g38020	pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	The ospht2;1 had reduced Pi accumulation, plant growth and photosynthetic rates
OsPHT2;1	Os02g0593500	LOC_Os02g38020	pi	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	In summary, OsPHT2;1 functions as a chloroplast-localized low-affinity Pi transporter that mediates UV tolerance and rice yields in different latitudes
OsPHT2;1	Os02g0593500	LOC_Os02g38020	phosphate transport	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoids accumulation and UV tolerance in rice.
OsPHY2	Os03g0818100	LOC_Os03g60370	temperature	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	Prokaryotic expressed OsPHY2 has a strong function on degradation of phytate, with optimal temperature of 47°C and optimal pH of 3
OsPHY2	Os03g0818100	LOC_Os03g60370	growth	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	Under the guidance of patatin signal peptide (PSP) of potato, the OsPHY2 expressed in tobacco could be secreted by the rhizosphere and hydrolyze the phytate into Pi, leading to a significantly more inorganic phosphate (Pi) accumulated and growth improved in plants under the condition using phytate as the sole phosphorus source
OsPHY2	Os03g0818100	LOC_Os03g60370	seed	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	During the seed germination, the transcripts of OsPHY2 were much more detected in the germinated seeds than in the primary roots and the leaves
OsPHY2	Os03g0818100	LOC_Os03g60370	seed	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	Therefore, as one HAP type of the phytase genes, OsPHY2 plays a critical role on the degradation of the phytins during the seed germination and has a potential application on the generation of elite crop germplasms with high use of efficiency of phytate and a large quantity of organic phosphate compounds in the arable land
OsPHY2	Os03g0818100	LOC_Os03g60370	seed germination	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	During the seed germination, the transcripts of OsPHY2 were much more detected in the germinated seeds than in the primary roots and the leaves
OsPHY2	Os03g0818100	LOC_Os03g60370	seed germination	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	Therefore, as one HAP type of the phytase genes, OsPHY2 plays a critical role on the degradation of the phytins during the seed germination and has a potential application on the generation of elite crop germplasms with high use of efficiency of phytate and a large quantity of organic phosphate compounds in the arable land
OsPHY2	Os03g0818100	LOC_Os03g60370	cytoplasm	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	OsPHY2 contains HP_HAP_like domain, a 24-aa signal peptide at the N-terminal and was targeted to the cytoplasm membrane after ER sorted
OsPHY2	Os03g0818100	LOC_Os03g60370	primary root	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	During the seed germination, the transcripts of OsPHY2 were much more detected in the germinated seeds than in the primary roots and the leaves
OsPHY2	Os03g0818100	LOC_Os03g60370	phosphate	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	Under the guidance of patatin signal peptide (PSP) of potato, the OsPHY2 expressed in tobacco could be secreted by the rhizosphere and hydrolyze the phytate into Pi, leading to a significantly more inorganic phosphate (Pi) accumulated and growth improved in plants under the condition using phytate as the sole phosphorus source
OsPHY2	Os03g0818100	LOC_Os03g60370	phosphate	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	Therefore, as one HAP type of the phytase genes, OsPHY2 plays a critical role on the degradation of the phytins during the seed germination and has a potential application on the generation of elite crop germplasms with high use of efficiency of phytate and a large quantity of organic phosphate compounds in the arable land
OsPHY2	Os03g0818100	LOC_Os03g60370	phosphorus	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	Under the guidance of patatin signal peptide (PSP) of potato, the OsPHY2 expressed in tobacco could be secreted by the rhizosphere and hydrolyze the phytate into Pi, leading to a significantly more inorganic phosphate (Pi) accumulated and growth improved in plants under the condition using phytate as the sole phosphorus source
OsPI1	Os01g0838350	None	phosphate	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	A novel gene was isolated by cDNA microarray analysis and designated as OsPI1 (Oryza sativaPhosphate-limitation Inducible Gene 1)
OsPI1	Os01g0838350	None	phosphate	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	The OsPI1 gene was rapidly induced by phosphate starvation in both shoots and roots
OsPI1	Os01g0838350	None	phosphate	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	When phosphate was supplied to phosphate-deficient plants, the OsPI1 transcripts rapidly disappeared
OsPI1	Os01g0838350	None	phosphate	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	The OsPI1 gene shows the same characteristics as the TPSI1/Mt4 family (the phosphate starvation inducible novel gene family)
OsPI1	Os01g0838350	None	phosphate	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	It is suggested that OsPI1 acts as riboregulator, that is, it binds with other molecules under phosphate starvation and regulates their function
OsPI1	Os01g0838350	None	phosphorus	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status
OsPI1	Os01g0838350	None	shoot	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	The OsPI1 gene was rapidly induced by phosphate starvation in both shoots and roots
OsPI1	Os01g0838350	None	root	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	The OsPI1 gene was rapidly induced by phosphate starvation in both shoots and roots
OsPI1	Os01g0838350	None	root	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status
OsPi304	Os08g0205150	LOC_Os08g10440	cold stress	OsCML16 interacts with a novel CC-NBS-LRR protein OsPi304 in the Ca2+/Mg2+ dependent and independent manner in rice.	In addition, transcript levels of OsCML16 and OsPi304 were induced more markedly in Nipponbare than in 9311 under cold stress
OsPi304	Os08g0205150	LOC_Os08g10440	stress	OsCML16 interacts with a novel CC-NBS-LRR protein OsPi304 in the Ca2+/Mg2+ dependent and independent manner in rice.	In addition, transcript levels of OsCML16 and OsPi304 were induced more markedly in Nipponbare than in 9311 under cold stress
OsPi304	Os08g0205150	LOC_Os08g10440	R protein	OsCML16 interacts with a novel CC-NBS-LRR protein OsPi304 in the Ca2+/Mg2+ dependent and independent manner in rice.	OsCML16 interacts with a novel CC-NBS-LRR protein OsPi304 in the Ca2+/Mg2+ dependent and independent manner in rice.
OsPI4K1	Os03g0711200	LOC_Os03g50320	jasmonic acid	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	OsPI4K1 transcript levels were detected in a low but constitutive manner in shoot, stem, leaf, spike and root tissues and did not change upon treatment with different hormones, calcium and jasmonic acid (JA)
OsPI4K1	Os03g0711200	LOC_Os03g50320	leaf	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	OsPI4K1 transcript levels were detected in a low but constitutive manner in shoot, stem, leaf, spike and root tissues and did not change upon treatment with different hormones, calcium and jasmonic acid (JA)
OsPI4K1	Os03g0711200	LOC_Os03g50320	stem	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	OsPI4K1 transcript levels were detected in a low but constitutive manner in shoot, stem, leaf, spike and root tissues and did not change upon treatment with different hormones, calcium and jasmonic acid (JA)
OsPI4K1	Os03g0711200	LOC_Os03g50320	tillering	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	) cDNA clone, OsPI4K1c, was isolated through screening of a cDNA library constructed from tillering materials
OsPI4K1	Os03g0711200	LOC_Os03g50320	tiller	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	) cDNA clone, OsPI4K1c, was isolated through screening of a cDNA library constructed from tillering materials
OsPI4K1	Os03g0711200	LOC_Os03g50320	salicylic acid	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	However, treatment with salicylic acid (SA) elevated the mRNA level of the OsPI4K1 gene, which suggested the involvement of OsPI4K1 in wounding responses
OsPI4K1	Os03g0711200	LOC_Os03g50320	root	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	OsPI4K1 transcript levels were detected in a low but constitutive manner in shoot, stem, leaf, spike and root tissues and did not change upon treatment with different hormones, calcium and jasmonic acid (JA)
OsPI4K1	Os03g0711200	LOC_Os03g50320	jasmonic	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	OsPI4K1 transcript levels were detected in a low but constitutive manner in shoot, stem, leaf, spike and root tissues and did not change upon treatment with different hormones, calcium and jasmonic acid (JA)
OsPI4K1	Os03g0711200	LOC_Os03g50320	pi	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	Further comparison with genomic sequences in databases revealed that OsPI4K1c is located at the 3'-end of a putative rice PI 4-kinase coding gene OsPI4K1, and its coding region corresponded to the C-terminal half of OsPI4K1 protein
OsPI4K1	Os03g0711200	LOC_Os03g50320	shoot	Isolation and functional characterization of the C-terminus of rice phosphatidylinositol 4-kinase in vitro	OsPI4K1 transcript levels were detected in a low but constitutive manner in shoot, stem, leaf, spike and root tissues and did not change upon treatment with different hormones, calcium and jasmonic acid (JA)
OsPIANK1	Os11g0182500	LOC_Os11g07980	magnaporthe oryzae	Functional analysis and expressional characterization of rice ankyrin repeat-containing protein, OsPIANK1, in basal defense against Magnaporthe oryzae attack	In this study, we further characterized the role of OsPIANK1 in basal defense against Magnaporthe oryzae (M
OsPIANK1	Os11g0182500	LOC_Os11g07980	magnaporthe oryzae	Functional analysis and expressional characterization of rice ankyrin repeat-containing protein, OsPIANK1, in basal defense against Magnaporthe oryzae attack	Functional analysis and expressional characterization of rice ankyrin repeat-containing protein, OsPIANK1, in basal defense against Magnaporthe oryzae attack
OsPIANK1	Os11g0182500	LOC_Os11g07980	defense	Functional analysis and expressional characterization of rice ankyrin repeat-containing protein, OsPIANK1, in basal defense against Magnaporthe oryzae attack	In this study, we further characterized the role of OsPIANK1 in basal defense against Magnaporthe oryzae (M
OsPIANK1	Os11g0182500	LOC_Os11g07980	defense	Functional analysis and expressional characterization of rice ankyrin repeat-containing protein, OsPIANK1, in basal defense against Magnaporthe oryzae attack	This evidence suggests that OsPIANK1 acted as a positive regulator in rice basal defense mediated by SA- and JA-signaling pathways
OsPIANK1	Os11g0182500	LOC_Os11g07980	defense	Functional analysis and expressional characterization of rice ankyrin repeat-containing protein, OsPIANK1, in basal defense against Magnaporthe oryzae attack	Functional analysis and expressional characterization of rice ankyrin repeat-containing protein, OsPIANK1, in basal defense against Magnaporthe oryzae attack
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	adventitious root	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport	Constitutive overexpression of OsPID caused a variety of abnormalities, such as delay of adventitious root development, curled growth of shoots and agravitropism
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	meristem	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport	Analysis of OsPID mRNA distribution showed a complex pattern in shoot meristems, indicating that it probably plays a role in the pattern formation and organogenesis in the rice shoot
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	auxin	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport	Abnormalities observed in the plants that overexpress OsPID could be phenocopied by treatment with an inhibitor of active polar transport of auxin, indicating that OsPID could be involved in the control of polar auxin transport in rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	auxin	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	shoot	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport	Constitutive overexpression of OsPID caused a variety of abnormalities, such as delay of adventitious root development, curled growth of shoots and agravitropism
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	shoot	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport	Analysis of OsPID mRNA distribution showed a complex pattern in shoot meristems, indicating that it probably plays a role in the pattern formation and organogenesis in the rice shoot
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	root	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport	Constitutive overexpression of OsPID caused a variety of abnormalities, such as delay of adventitious root development, curled growth of shoots and agravitropism
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	root development	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport	Constitutive overexpression of OsPID caused a variety of abnormalities, such as delay of adventitious root development, curled growth of shoots and agravitropism
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	growth	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport	Constitutive overexpression of OsPID caused a variety of abnormalities, such as delay of adventitious root development, curled growth of shoots and agravitropism
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	flower	PINOID is required for formation of the stigma and style in rice.	Interestingly, ospid mutants did not display defects in flower initiation, nor did they develop any pin-like inflorescences, a characteristic phenotype observed in pid mutants in Arabidopsis (Arabidopsis thaliana) and maize (Zea mays)
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	development	PINOID is required for formation of the stigma and style in rice.	Disruption of the rice PINOID (OsPID) gene completely eliminated the development of stigmas, and overexpression of OsPID led to over-proliferation of stigmas, suggesting that OsPID is a key determinant for stigma development
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	development	PINOID is required for formation of the stigma and style in rice.	The ospid osnyp2 double mutants developed pin-like inflorescences, which were phenotypically similar to pid mutants in Arabidopsis and maize, demonstrating that the roles of OsPID in inflorescence development are likely masked by redundant partners
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	inflorescence	PINOID is required for formation of the stigma and style in rice.	The ospid osnyp2 double mutants developed pin-like inflorescences, which were phenotypically similar to pid mutants in Arabidopsis and maize, demonstrating that the roles of OsPID in inflorescence development are likely masked by redundant partners
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	flower	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Unlike the pid mutant that shows typical pin-like inflorescences in maize (Zea mays) and Arabidopsis (Arabidopsis thaliana), the ospid mutant does not display any defects in inflorescence development and flower initiation
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	development	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Unlike the pid mutant that shows typical pin-like inflorescences in maize (Zea mays) and Arabidopsis (Arabidopsis thaliana), the ospid mutant does not display any defects in inflorescence development and flower initiation
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	development	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Furthermore, the expression of most auxin response factor (ARF) genes was down-regulated, and OsETTIN1, OsETTIN2 and OsMONOPTEROS lost their rearrangements of expression patterns during pistil and stamen primordia development in ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	auxin	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	The auxin activity in the young pistil of ospid was lower than that in the wild-type pistil
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	auxin	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Furthermore, the expression of most auxin response factor (ARF) genes was down-regulated, and OsETTIN1, OsETTIN2 and OsMONOPTEROS lost their rearrangements of expression patterns during pistil and stamen primordia development in ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Moreover, the transcription of the floral meristem marker gene, OSH1, was down-regulated and FLORAL ORGAN NUMBER4 (FON4), the putative ortholog of Arabidopsis CLAVATA3 (CLV3), was up-regulated in the pistil primordium of ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	meristem	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Moreover, the transcription of the floral meristem marker gene, OSH1, was down-regulated and FLORAL ORGAN NUMBER4 (FON4), the putative ortholog of Arabidopsis CLAVATA3 (CLV3), was up-regulated in the pistil primordium of ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	meristem	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	These results suggested that the meristem proliferation in the pistil primordium might be arrested prematurely in ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	inflorescence	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Unlike the pid mutant that shows typical pin-like inflorescences in maize (Zea mays) and Arabidopsis (Arabidopsis thaliana), the ospid mutant does not display any defects in inflorescence development and flower initiation
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	stamen	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Furthermore, the expression of most auxin response factor (ARF) genes was down-regulated, and OsETTIN1, OsETTIN2 and OsMONOPTEROS lost their rearrangements of expression patterns during pistil and stamen primordia development in ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral meristem	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Moreover, the transcription of the floral meristem marker gene, OSH1, was down-regulated and FLORAL ORGAN NUMBER4 (FON4), the putative ortholog of Arabidopsis CLAVATA3 (CLV3), was up-regulated in the pistil primordium of ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral organ	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Moreover, the transcription of the floral meristem marker gene, OSH1, was down-regulated and FLORAL ORGAN NUMBER4 (FON4), the putative ortholog of Arabidopsis CLAVATA3 (CLV3), was up-regulated in the pistil primordium of ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral organ number	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Moreover, the transcription of the floral meristem marker gene, OSH1, was down-regulated and FLORAL ORGAN NUMBER4 (FON4), the putative ortholog of Arabidopsis CLAVATA3 (CLV3), was up-regulated in the pistil primordium of ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	auxin response	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the Floral Meristem by Auxin Signaling.	Furthermore, the expression of most auxin response factor (ARF) genes was down-regulated, and OsETTIN1, OsETTIN2 and OsMONOPTEROS lost their rearrangements of expression patterns during pistil and stamen primordia development in ospid
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	auxin	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Our data demonstrate that OsPID interacts with OsPIN1a and OsPIN1b to regulate polar auxin transport as shown previously
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	auxin	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Together, we propose a model that OsPID regulates floral organ development by modulating auxin polar transport and interaction with OsMADS16 and/or LAX1 in rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	development	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Additionally, OsPID also interacts with OsMADS16 to regulate transcription during floral organ development in rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	development	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Together, we propose a model that OsPID regulates floral organ development by modulating auxin polar transport and interaction with OsMADS16 and/or LAX1 in rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	development	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	These results provide a novel insight into the role of OsPID in regulating floral organ development of rice, especially in stigma development, which would be useful for genetic improvement of high-yield breeding of rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Additionally, OsPID also interacts with OsMADS16 to regulate transcription during floral organ development in rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Together, we propose a model that OsPID regulates floral organ development by modulating auxin polar transport and interaction with OsMADS16 and/or LAX1 in rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	These results provide a novel insight into the role of OsPID in regulating floral organ development of rice, especially in stigma development, which would be useful for genetic improvement of high-yield breeding of rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	auxin transport	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Our data demonstrate that OsPID interacts with OsPIN1a and OsPIN1b to regulate polar auxin transport as shown previously
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral organ	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Additionally, OsPID also interacts with OsMADS16 to regulate transcription during floral organ development in rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral organ	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Together, we propose a model that OsPID regulates floral organ development by modulating auxin polar transport and interaction with OsMADS16 and/or LAX1 in rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	floral organ	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	These results provide a novel insight into the role of OsPID in regulating floral organ development of rice, especially in stigma development, which would be useful for genetic improvement of high-yield breeding of rice
OsPID|OsPINOID	Os12g0614600	LOC_Os12g42020	breeding	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	These results provide a novel insight into the role of OsPID in regulating floral organ development of rice, especially in stigma development, which would be useful for genetic improvement of high-yield breeding of rice
OsPIE1	Os01g0954400	LOC_Os01g72480	root	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	OsPIE1 was localized to the nucleus, and expressed in epidermis, exodermis and sclerenchyma layers of primary root
OsPIE1	Os01g0954400	LOC_Os01g72480	homeostasis	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	The function of OsPIE1 in Pi homeostasis was analyzed using OsPIE1 overexpressors and ospie1 mutants
OsPIE1	Os01g0954400	LOC_Os01g72480	homeostasis	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	These results indicate that OsPIE1 plays an important role in maintaining Pi homeostasis in rice
OsPIE1	Os01g0954400	LOC_Os01g72480	primary root	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	OsPIE1 was localized to the nucleus, and expressed in epidermis, exodermis and sclerenchyma layers of primary root
OsPIE1	Os01g0954400	LOC_Os01g72480	Pi	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	The function of OsPIE1 in Pi homeostasis was analyzed using OsPIE1 overexpressors and ospie1 mutants
OsPIE1	Os01g0954400	LOC_Os01g72480	Pi	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	Under Pi-sufficient condition, overexpression of OsPIE1 upregulated the expression of OsPT2, OsPT3, OsPT10 and OsPAP21b, resulting in Pi accumulation and acid phosphatases (APases) induction in roots
OsPIE1	Os01g0954400	LOC_Os01g72480	Pi	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	Further comparative transcriptome analysis, tissue expression patterns and genetic interaction analysis indicated that the enhancing of Pi accumulation and APase activities upon overexpression of OsPIE1 was (at least in part) caused by repression of OsSPX2
OsPIE1	Os01g0954400	LOC_Os01g72480	Pi	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	These results indicate that OsPIE1 plays an important role in maintaining Pi homeostasis in rice
OsPIE1	Os01g0954400	LOC_Os01g72480	pi	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	The function of OsPIE1 in Pi homeostasis was analyzed using OsPIE1 overexpressors and ospie1 mutants
OsPIE1	Os01g0954400	LOC_Os01g72480	pi	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	Under Pi-sufficient condition, overexpression of OsPIE1 upregulated the expression of OsPT2, OsPT3, OsPT10 and OsPAP21b, resulting in Pi accumulation and acid phosphatases (APases) induction in roots
OsPIE1	Os01g0954400	LOC_Os01g72480	pi	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	Further comparative transcriptome analysis, tissue expression patterns and genetic interaction analysis indicated that the enhancing of Pi accumulation and APase activities upon overexpression of OsPIE1 was (at least in part) caused by repression of OsSPX2
OsPIE1	Os01g0954400	LOC_Os01g72480	pi	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	These results indicate that OsPIE1 plays an important role in maintaining Pi homeostasis in rice
OsPIE1	Os01g0954400	LOC_Os01g72480	Pi homeostasis	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	The function of OsPIE1 in Pi homeostasis was analyzed using OsPIE1 overexpressors and ospie1 mutants
OsPIE1	Os01g0954400	LOC_Os01g72480	Pi homeostasis	A phosphate-starvation induced RING-type E3 ligase maintains phosphate homeostasis partially through OsSPX2 in rice.	These results indicate that OsPIE1 plays an important role in maintaining Pi homeostasis in rice
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	Kinase	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	kinase	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 The U-box E3 ubiquitin ligase OsPIE3 (PID2-interacting E3) was isolated and confirmed to play key roles in PID2-mediated rice blast resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Genetic analysis suggested that OsPIE3 loss-of-function mutants exhibited enhanced resistance to M
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 oryzae isolate ZB15, whereas mutants with overexpressed OsPIE3 exhibited reduced resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Furthermore, the OsPIE3/PID2-double mutant displayed a similar blast phenotype to that of the PID2 single mutant, suggesting that OsPIE3 is a negative regulator and functions along with PID2 in blast disease resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Our findings confirm that the E3 ubiquitin ligase OsPIE3 is necessary for PID2-mediated rice blast disease resistance regulation
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	disease	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	disease	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Furthermore, the OsPIE3/PID2-double mutant displayed a similar blast phenotype to that of the PID2 single mutant, suggesting that OsPIE3 is a negative regulator and functions along with PID2 in blast disease resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	disease	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Our findings confirm that the E3 ubiquitin ligase OsPIE3 is necessary for PID2-mediated rice blast disease resistance regulation
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	disease resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	disease resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Furthermore, the OsPIE3/PID2-double mutant displayed a similar blast phenotype to that of the PID2 single mutant, suggesting that OsPIE3 is a negative regulator and functions along with PID2 in blast disease resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	disease resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Our findings confirm that the E3 ubiquitin ligase OsPIE3 is necessary for PID2-mediated rice blast disease resistance regulation
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	blast	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	blast	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 The U-box E3 ubiquitin ligase OsPIE3 (PID2-interacting E3) was isolated and confirmed to play key roles in PID2-mediated rice blast resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	blast	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Furthermore, the OsPIE3/PID2-double mutant displayed a similar blast phenotype to that of the PID2 single mutant, suggesting that OsPIE3 is a negative regulator and functions along with PID2 in blast disease resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	blast	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Our findings confirm that the E3 ubiquitin ligase OsPIE3 is necessary for PID2-mediated rice blast disease resistance regulation
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	R protein	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Further investigation demonstrated that OsPIE3 can modify the subcellular localisation of PID2, thus promoting its nuclear recruitment from the plasma membrane for protein degradation in the ubiquitin-proteasome system
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	blast resistance	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 The U-box E3 ubiquitin ligase OsPIE3 (PID2-interacting E3) was isolated and confirmed to play key roles in PID2-mediated rice blast resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	plasma membrane	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Further investigation demonstrated that OsPIE3 can modify the subcellular localisation of PID2, thus promoting its nuclear recruitment from the plasma membrane for protein degradation in the ubiquitin-proteasome system
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	Ubiquitin	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	Ubiquitin	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 The U-box E3 ubiquitin ligase OsPIE3 (PID2-interacting E3) was isolated and confirmed to play key roles in PID2-mediated rice blast resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	Ubiquitin	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Our findings confirm that the E3 ubiquitin ligase OsPIE3 is necessary for PID2-mediated rice blast disease resistance regulation
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	blast disease	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	blast disease	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Furthermore, the OsPIE3/PID2-double mutant displayed a similar blast phenotype to that of the PID2 single mutant, suggesting that OsPIE3 is a negative regulator and functions along with PID2 in blast disease resistance
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	blast disease	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	 Our findings confirm that the E3 ubiquitin ligase OsPIE3 is necessary for PID2-mediated rice blast disease resistance regulation
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	Kinase	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	kinase	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	drought	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	stress	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Loss-of-function mutants of OsPUB16 generated through CRISPR/Cas9 system exhibited the markedly enhanced water-deficit tolerance, while OsPUB16 overexpression lines were hypersensitive to water deficit stress
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	ja	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	ja	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Moreover, OsPUB16 negatively regulated ABA and JA response, and ospub16 mutants produced more endogenous ABA and JA than wild type when exposed to water deficit
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	ja	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Collectively, our findings establish that OsPUB16 reduces plant water-deficit tolerance by modulating the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to repress ABA and JA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	JA	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	JA	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Moreover, OsPUB16 negatively regulated ABA and JA response, and ospub16 mutants produced more endogenous ABA and JA than wild type when exposed to water deficit
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	JA	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Collectively, our findings establish that OsPUB16 reduces plant water-deficit tolerance by modulating the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to repress ABA and JA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	tolerance	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	tolerance	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	tolerance	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Collectively, our findings establish that OsPUB16 reduces plant water-deficit tolerance by modulating the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to repress ABA and JA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	ABA	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	ABA	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Moreover, OsPUB16 negatively regulated ABA and JA response, and ospub16 mutants produced more endogenous ABA and JA than wild type when exposed to water deficit
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	ABA	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	ABA	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Collectively, our findings establish that OsPUB16 reduces plant water-deficit tolerance by modulating the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to repress ABA and JA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	drought tolerance	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	protein kinase	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	 ABA 	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	 ABA 	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Moreover, OsPUB16 negatively regulated ABA and JA response, and ospub16 mutants produced more endogenous ABA and JA than wild type when exposed to water deficit
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	 ABA 	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	 ABA 	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Collectively, our findings establish that OsPUB16 reduces plant water-deficit tolerance by modulating the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to repress ABA and JA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	ABA biosynthesis	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	JA biosynthesis	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	JA biosynthesis	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Collectively, our findings establish that OsPUB16 reduces plant water-deficit tolerance by modulating the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to repress ABA and JA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	osmotic stress	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Mechanistic investigations revealed that OsPUB16 mediated the ubiquitination and degradation of OsMADS23, which is the substrate of OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 9 (SAPK9) and increases rice drought tolerance by promoting ABA biosynthesis
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	 ja 	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	 ja 	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Moreover, OsPUB16 negatively regulated ABA and JA response, and ospub16 mutants produced more endogenous ABA and JA than wild type when exposed to water deficit
OsPIE3|OsPUB16	Os01g0884400	LOC_Os01g66130	 ja 	Rice OsPUB16 modulates the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	 Collectively, our findings establish that OsPUB16 reduces plant water-deficit tolerance by modulating the &#x27;SAPK9-OsMADS23-OsAOC&#x27; pathway to repress ABA and JA biosynthesis
OsPIL11	Os12g0610200	LOC_Os12g41650	leaf	Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction	The expression of OsPIL11 was organ-specific and was regulated by leaf development, abscisic acid (ABA), jasmonic acid (JA) and salicylic acid (SA)
OsPIL11	Os12g0610200	LOC_Os12g41650	jasmonic	Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction	The expression of OsPIL11 was organ-specific and was regulated by leaf development, abscisic acid (ABA), jasmonic acid (JA) and salicylic acid (SA)
OsPIL11	Os12g0610200	LOC_Os12g41650	jasmonic acid	Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction	The expression of OsPIL11 was organ-specific and was regulated by leaf development, abscisic acid (ABA), jasmonic acid (JA) and salicylic acid (SA)
OsPIL11	Os12g0610200	LOC_Os12g41650	salicylic acid	Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction	The expression of OsPIL11 was organ-specific and was regulated by leaf development, abscisic acid (ABA), jasmonic acid (JA) and salicylic acid (SA)
OsPIL11	Os12g0610200	LOC_Os12g41650	seedling	Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction	When grown under continuous red light, OsPIL11-overexpressed transgenic tobacco exhibited shorter hypocotyls and larger cotyledons and leaves compared to wild-type seedlings
OsPIL11	Os12g0610200	LOC_Os12g41650	leaf development	Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction	The expression of OsPIL11 was organ-specific and was regulated by leaf development, abscisic acid (ABA), jasmonic acid (JA) and salicylic acid (SA)
OsPIL11	Os12g0610200	LOC_Os12g41650	tiller	PIL transcription factors directly interact with SPLs and repress tillering/branching in plants.	 In rice, overexpression and loss-of-function mutations of OsPIL11 reduce or increase tiller number by regulating the expression of OsTB1
OsPIL11	Os12g0610200	LOC_Os12g41650	tiller number	PIL transcription factors directly interact with SPLs and repress tillering/branching in plants.	 In rice, overexpression and loss-of-function mutations of OsPIL11 reduce or increase tiller number by regulating the expression of OsTB1
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	cell wall	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	Oligoarray analysis revealed OsPIL1 downstream genes, which were enriched for cell wall-related genes responsible for cell elongation
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	cell wall	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	These data suggest that OsPIL1 functions as a key regulatory factor of reduced plant height via cell wall-related genes in response to drought stress
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	cell elongation	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	Oligoarray analysis revealed OsPIL1 downstream genes, which were enriched for cell wall-related genes responsible for cell elongation
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	stem	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	We found that OsPIL1 was highly expressed in the node portions of the stem using promoter-glucuronidase analysis
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	In addition, OsPIL13 and OsPIL15 colocalize with OsPRR1, an ortholog of the Arabidopsis APRR1 gene that controls photoperiodic flowering response through clock function
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Together, these results suggest that overexpression of OsLF might repress expression of OsGI and Hd1 by competing with OsPRR1 in interacting with OsPIL13 and OsPIL15 and thus induce late flowering
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	drought	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	Here, we demonstrate that a phytochrome-interacting factor-like protein, OsPIL1/OsPIL13, acts as a key regulator of reduced internode elongation in rice under drought conditions
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	drought	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	Under drought stress conditions, OsPIL1 expression was inhibited during the light period
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	drought	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	These data suggest that OsPIL1 functions as a key regulatory factor of reduced plant height via cell wall-related genes in response to drought stress
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	drought	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	height	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	These data suggest that OsPIL1 functions as a key regulatory factor of reduced plant height via cell wall-related genes in response to drought stress
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	flowering time	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	seedling	Characterization of a Set of Phytochrome-Interacting Factor-Like bHLH Proteins inOryza sativa	It was found that the expression of OsPIL13 is under the control of circadian rhythms (clock), while the expression of OsPIL15 is negatively regulated by light upon the onset to light exposure of etiolated seedlings
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	seedling	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress	The level of OsPIL1 mRNA in rice seedlings grown under nonstressed conditions with light/dark cycles oscillated in a circadian manner with peaks in the middle of the light period
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	growth	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Transcriptome analyses showed increased expression of abiotic stress-inducible DREB1A downstream genes and cell elongation-related OsPIL1 downstream genes in the double overexpressors, which suggests that these two transcription factors function independently in the transgenic plants despite the trade-offs required to balance plant growth and stress tolerance
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	drought	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	The transgenic plants overexpressing both OsPIL1 and DREB1A showed improved drought stress tolerance similar to that of DREB1A overexpressors
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	tolerance	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	The transgenic plants overexpressing both OsPIL1 and DREB1A showed improved drought stress tolerance similar to that of DREB1A overexpressors
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	tolerance	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Transcriptome analyses showed increased expression of abiotic stress-inducible DREB1A downstream genes and cell elongation-related OsPIL1 downstream genes in the double overexpressors, which suggests that these two transcription factors function independently in the transgenic plants despite the trade-offs required to balance plant growth and stress tolerance
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	transcription factor	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Transcriptome analyses showed increased expression of abiotic stress-inducible DREB1A downstream genes and cell elongation-related OsPIL1 downstream genes in the double overexpressors, which suggests that these two transcription factors function independently in the transgenic plants despite the trade-offs required to balance plant growth and stress tolerance
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	abiotic stress	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Transcriptome analyses showed increased expression of abiotic stress-inducible DREB1A downstream genes and cell elongation-related OsPIL1 downstream genes in the double overexpressors, which suggests that these two transcription factors function independently in the transgenic plants despite the trade-offs required to balance plant growth and stress tolerance
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	stress	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	The transgenic plants overexpressing both OsPIL1 and DREB1A showed improved drought stress tolerance similar to that of DREB1A overexpressors
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	stress	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Transcriptome analyses showed increased expression of abiotic stress-inducible DREB1A downstream genes and cell elongation-related OsPIL1 downstream genes in the double overexpressors, which suggests that these two transcription factors function independently in the transgenic plants despite the trade-offs required to balance plant growth and stress tolerance
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	cell wall	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	OsPIL1 is a rice homologue of Arabidopsis PHYTOCHROME-INTERACTING FACTOR 4 (PIF4), and it enhances cell elongation by activating cell wall-related gene expression
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	cell elongation	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	OsPIL1 is a rice homologue of Arabidopsis PHYTOCHROME-INTERACTING FACTOR 4 (PIF4), and it enhances cell elongation by activating cell wall-related gene expression
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	cell elongation	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Transcriptome analyses showed increased expression of abiotic stress-inducible DREB1A downstream genes and cell elongation-related OsPIL1 downstream genes in the double overexpressors, which suggests that these two transcription factors function independently in the transgenic plants despite the trade-offs required to balance plant growth and stress tolerance
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	biotic stress	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Transcriptome analyses showed increased expression of abiotic stress-inducible DREB1A downstream genes and cell elongation-related OsPIL1 downstream genes in the double overexpressors, which suggests that these two transcription factors function independently in the transgenic plants despite the trade-offs required to balance plant growth and stress tolerance
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	drought stress	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	The transgenic plants overexpressing both OsPIL1 and DREB1A showed improved drought stress tolerance similar to that of DREB1A overexpressors
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	drought stress	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	The transgenic plants overexpressing both OsPIL1 and DREB1A showed improved drought stress tolerance similar to that of DREB1A overexpressors
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	stress tolerance	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	The transgenic plants overexpressing both OsPIL1 and DREB1A showed improved drought stress tolerance similar to that of DREB1A overexpressors
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	stress tolerance	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Transcriptome analyses showed increased expression of abiotic stress-inducible DREB1A downstream genes and cell elongation-related OsPIL1 downstream genes in the double overexpressors, which suggests that these two transcription factors function independently in the transgenic plants despite the trade-offs required to balance plant growth and stress tolerance
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	plant growth	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Transcriptome analyses showed increased expression of abiotic stress-inducible DREB1A downstream genes and cell elongation-related OsPIL1 downstream genes in the double overexpressors, which suggests that these two transcription factors function independently in the transgenic plants despite the trade-offs required to balance plant growth and stress tolerance
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	leaf	Roles of rice PHYTOCHROME-INTERACTING FACTOR-LIKE1 (OsPIL1) in leaf senescence.	Here, we show that OsPIL1 negatively regulates leaf senescence in rice
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	leaf	Roles of rice PHYTOCHROME-INTERACTING FACTOR-LIKE1 (OsPIL1) in leaf senescence.	Microarray analysis revealed that during DIS, a number of senescence-associated genes were upregulated and OsGLKs, negative regulators of leaf senescence, were strongly repressed in ospil1 mutants
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	leaf senescence	Roles of rice PHYTOCHROME-INTERACTING FACTOR-LIKE1 (OsPIL1) in leaf senescence.	Here, we show that OsPIL1 negatively regulates leaf senescence in rice
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	leaf senescence	Roles of rice PHYTOCHROME-INTERACTING FACTOR-LIKE1 (OsPIL1) in leaf senescence.	Microarray analysis revealed that during DIS, a number of senescence-associated genes were upregulated and OsGLKs, negative regulators of leaf senescence, were strongly repressed in ospil1 mutants
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	transcription factor	Roles of rice PHYTOCHROME-INTERACTING FACTOR-LIKE1 (OsPIL1) in leaf senescence.	In addition, OsPIL1 expressed in Arabidopsis upregulates the transcription of ORESARA1, a major senescence-inducing NAC transcription factor and one of the downstream genes of Arabidopsis PIF4, by directly binding the promoter region
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	senescence	Roles of rice PHYTOCHROME-INTERACTING FACTOR-LIKE1 (OsPIL1) in leaf senescence.	Here, we show that OsPIL1 negatively regulates leaf senescence in rice
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	senescence	Roles of rice PHYTOCHROME-INTERACTING FACTOR-LIKE1 (OsPIL1) in leaf senescence.	During dark-induced senescence (DIS), ospil1 mutants senesced earlier than wild type; this is opposite to mutants of Arabidopsis PIF4 and PIF5, the closest homologs of OsPIL1
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	transcription factor	Rice Phytochrome-Interacting Factor-Like1 (OsPIL1) is involved in the promotion of chlorophyll biosynthesis through feed-forward regulatory loops.	In addition, OsPIL1 directly up-regulates the expression of two transcription factor genes, GOLDEN2-LIKE1 (OsGLK1) and OsGLK2
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	photosynthesis	Rice Phytochrome-Interacting Factor-Like1 (OsPIL1) is involved in the promotion of chlorophyll biosynthesis through feed-forward regulatory loops.	Transcriptome analysis revealed that several genes responsible for Chl biosynthesis and photosynthesis were significantly down-regulated in ospil1 leaves
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	Chl biosynthesis	Rice Phytochrome-Interacting Factor-Like1 (OsPIL1) is involved in the promotion of chlorophyll biosynthesis through feed-forward regulatory loops.	Transcriptome analysis revealed that several genes responsible for Chl biosynthesis and photosynthesis were significantly down-regulated in ospil1 leaves
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	Chl biosynthesis	Rice Phytochrome-Interacting Factor-Like1 (OsPIL1) is involved in the promotion of chlorophyll biosynthesis through feed-forward regulatory loops.	Thus, OsPIL1 is involved in the promotion of Chl biosynthesis by up-regulating the transcription of OsPORB and OsCAO1 via trifurcate feed-forward regulatory loops involving two OsGLKs
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	transcription factor	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	The OsPIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1) gene encodes a basic helix-loop-helix transcription factor
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	yield	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	yield	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	Here, we introduced the OsPIL1 gene into switchgrass by Agrobacterium-mediated transformation with the aim of improving biomass yield of transgenic switchgrass plants
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	yield	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	The transgenic plants overexpression of OsPIL1 showed increased plant height and biomass yield
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	biomass	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	biomass	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	Here, we introduced the OsPIL1 gene into switchgrass by Agrobacterium-mediated transformation with the aim of improving biomass yield of transgenic switchgrass plants
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	biomass	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	The transgenic plants overexpression of OsPIL1 showed increased plant height and biomass yield
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	biomass	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	The results suggest OsPIL1 can be used as a useful molecular tool in improving plant biomass and saccharification efficiency with the purpose of plant fiber biofuel ethanol production
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	height	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	The transgenic plants overexpression of OsPIL1 showed increased plant height and biomass yield
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	plant height	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	The transgenic plants overexpression of OsPIL1 showed increased plant height and biomass yield
OsPIL13|OsPIL1	Os03g0782500	LOC_Os03g56950	sugar	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	OsPIL1 overexpressed transgenic switchgrass plants also released more soluble sugar after enzymatic hydrolysis, indicating improved saccharification efficiency
OsPIL14|OsPIF14	Os07g0143200	LOC_Os07g05010	stress	Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of Phytochrome B.	All together, these results suggest the possibility that OsPIF14 is involved in cross-talk between light and stress signaling through interaction with the OsDREB1B promoter
OsPIL14|OsPIF14	Os07g0143200	LOC_Os07g05010	stress	Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of Phytochrome B.	Although in the absence of stress, OsDREB1B gene expression was not regulated by light, given previous reports, it remains possible that OsPIF14 has a role in light modulation of stress responses
OsPIL14|OsPIF14	Os07g0143200	LOC_Os07g05010	R protein	Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of Phytochrome B.	Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of Phytochrome B.
OsPIL14|OsPIF14	Os07g0143200	LOC_Os07g05010	R protein	Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of Phytochrome B.	We have shown that OsPIF14 binds to the OsDREB1B promoter through two N-boxes and that the flanking regions of the hexameric core are essential for protein-DNA interaction and stability
OsPIL14|OsPIF14	Os07g0143200	LOC_Os07g05010	ABA	Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of Phytochrome B.	Moreover, OsPIF14 gene expression was shown to be modulated by different treatments, such as drought, salt, cold and ABA
OsPIL14|OsPIF14	Os07g0143200	LOC_Os07g05010	stress response	Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of Phytochrome B.	Although in the absence of stress, OsDREB1B gene expression was not regulated by light, given previous reports, it remains possible that OsPIF14 has a role in light modulation of stress responses
OsPIL14|OsPIF14	Os07g0143200	LOC_Os07g05010	salt	PHYTOCHROME-INTERACTING FACTOR-LIKE14 and SLENDER RICE1 interaction controls seedling growth under salt stress	Furthermore, salt induces OsPIL14 turnover but enhances SLR1 accumulation
OsPIL14|OsPIF14	Os07g0143200	LOC_Os07g05010	cell elongation	PHYTOCHROME-INTERACTING FACTOR-LIKE14 and SLENDER RICE1 interaction controls seedling growth under salt stress	OsPIL14 directly binds to the promoter of cell elongation-related genes and regulates their expression
OsPIL15	Os01g0286100	None	auxin	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Microarray analysis combined with gene ontology analysis revealed that OsPIL15 represses a set of genes involved in auxin pathways and cell wall organization or biogenesis
OsPIL15	Os01g0286100	None	auxin	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Given the important roles of the auxin pathway and cell wall properties in controlling plant growth, we speculate that OsPIL15 represses seedling growth likely by regulating the auxin pathway and suppressing cell wall organization in etiolated rice seedlings
OsPIL15	Os01g0286100	None	seedling	Characterization of a Set of Phytochrome-Interacting Factor-Like bHLH Proteins inOryza sativa	It was found that the expression of OsPIL13 is under the control of circadian rhythms (clock), while the expression of OsPIL15 is negatively regulated by light upon the onset to light exposure of etiolated seedlings
OsPIL15	Os01g0286100	None	growth	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	OsPIL15-OX seedlings exhibit an exaggerated shorter aboveground part and undeveloped root system relative to wild-type seedlings, suggesting that OsPIL15 represses seedling growth in the dark
OsPIL15	Os01g0286100	None	growth	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Given the important roles of the auxin pathway and cell wall properties in controlling plant growth, we speculate that OsPIL15 represses seedling growth likely by regulating the auxin pathway and suppressing cell wall organization in etiolated rice seedlings
OsPIL15	Os01g0286100	None	growth	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Additionally, exposure to red light or far-red light relieved growth retardation and promoted seedling elongation in the OsPIL15-OX lines, despite higher levels of OsPIL15 transcripts under red light and far-red light than in the dark
OsPIL15	Os01g0286100	None	growth	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice
OsPIL15	Os01g0286100	None	flowering time	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15
OsPIL15	Os01g0286100	None	seedling	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	OsPIL15-OX seedlings exhibit an exaggerated shorter aboveground part and undeveloped root system relative to wild-type seedlings, suggesting that OsPIL15 represses seedling growth in the dark
OsPIL15	Os01g0286100	None	seedling	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Given the important roles of the auxin pathway and cell wall properties in controlling plant growth, we speculate that OsPIL15 represses seedling growth likely by regulating the auxin pathway and suppressing cell wall organization in etiolated rice seedlings
OsPIL15	Os01g0286100	None	seedling	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Additionally, exposure to red light or far-red light relieved growth retardation and promoted seedling elongation in the OsPIL15-OX lines, despite higher levels of OsPIL15 transcripts under red light and far-red light than in the dark
OsPIL15	Os01g0286100	None	seedling	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice
OsPIL15	Os01g0286100	None	root	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	OsPIL15-OX seedlings exhibit an exaggerated shorter aboveground part and undeveloped root system relative to wild-type seedlings, suggesting that OsPIL15 represses seedling growth in the dark
OsPIL15	Os01g0286100	None	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	In addition, OsPIL13 and OsPIL15 colocalize with OsPRR1, an ortholog of the Arabidopsis APRR1 gene that controls photoperiodic flowering response through clock function
OsPIL15	Os01g0286100	None	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Together, these results suggest that overexpression of OsLF might repress expression of OsGI and Hd1 by competing with OsPRR1 in interacting with OsPIL13 and OsPIL15 and thus induce late flowering
OsPIL15	Os01g0286100	None	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15
OsPIL15	Os01g0286100	None	cell wall	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Microarray analysis combined with gene ontology analysis revealed that OsPIL15 represses a set of genes involved in auxin pathways and cell wall organization or biogenesis
OsPIL15	Os01g0286100	None	cell wall	Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	Given the important roles of the auxin pathway and cell wall properties in controlling plant growth, we speculate that OsPIL15 represses seedling growth likely by regulating the auxin pathway and suppressing cell wall organization in etiolated rice seedlings
OsPIL15	Os01g0286100	None	transcription factor	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.
OsPIL15	Os01g0286100	None	grain	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.
OsPIL15	Os01g0286100	None	grain	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	Here we firstly analyzed the expression pattern of rice OsPIL genes in grains and found that OsPIL15 may play an important role in grain development
OsPIL15	Os01g0286100	None	grain	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	We then generated knock-out (KO) OsPIL15 lines in rice using CRISPR/Cas9 technology, the silencing expression of OsPIL15 led to increased numbers of cells, which thus enhanced grain size and weight
OsPIL15	Os01g0286100	None	grain	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	Moreover, overexpression and suppression of OsPIL15 in the rice endosperm resulted in brown rice showing grain sizes and weights that were decreased and increased, respectively
OsPIL15	Os01g0286100	None	grain	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	Overall, our results demonstrate a possible pathway whereby OsPIL15 directly targets OsPUP7, affecting CTK transport and thereby influencing cell division and subsequent grain size
OsPIL15	Os01g0286100	None	development	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	Here we firstly analyzed the expression pattern of rice OsPIL genes in grains and found that OsPIL15 may play an important role in grain development
OsPIL15	Os01g0286100	None	yield	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	These findings provide a valuable insight into the molecular functions of OsPIL15 in rice grains, highlighting a useful genetic improvement leading to increased rice yield
OsPIL15	Os01g0286100	None	grain size	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.
OsPIL15	Os01g0286100	None	grain size	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	We then generated knock-out (KO) OsPIL15 lines in rice using CRISPR/Cas9 technology, the silencing expression of OsPIL15 led to increased numbers of cells, which thus enhanced grain size and weight
OsPIL15	Os01g0286100	None	grain size	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	Moreover, overexpression and suppression of OsPIL15 in the rice endosperm resulted in brown rice showing grain sizes and weights that were decreased and increased, respectively
OsPIL15	Os01g0286100	None	grain size	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	Overall, our results demonstrate a possible pathway whereby OsPIL15 directly targets OsPUP7, affecting CTK transport and thereby influencing cell division and subsequent grain size
OsPIL15	Os01g0286100	None	cell division	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	Overall, our results demonstrate a possible pathway whereby OsPIL15 directly targets OsPUP7, affecting CTK transport and thereby influencing cell division and subsequent grain size
OsPIL15	Os01g0286100	None	endosperm	The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice.	Moreover, overexpression and suppression of OsPIL15 in the rice endosperm resulted in brown rice showing grain sizes and weights that were decreased and increased, respectively
OsPIL15	Os01g0286100	None	shoot gravitropism	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Dominant-negative OsPIL15 plants displayed a larger tiller angle, which was associated with reduced shoot gravitropism
OsPIL15	Os01g0286100	None	shoot	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Dominant-negative OsPIL15 plants displayed a larger tiller angle, which was associated with reduced shoot gravitropism
OsPIL15	Os01g0286100	None	tiller	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.
OsPIL15	Os01g0286100	None	tiller	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Rice phytochrome-interacting factor-like protein OsPIL15 regulates tiller angle through light and gravity signals in rice
OsPIL15	Os01g0286100	None	tiller	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Here, we report that OsPIL15 is, indeed, a rice PIF that negatively regulates tiller angle
OsPIL15	Os01g0286100	None	tiller	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Dominant-negative OsPIL15 plants displayed a larger tiller angle, which was associated with reduced shoot gravitropism
OsPIL15	Os01g0286100	None	tiller	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	We propose that OsPIL15 integrates light and gravity signals to regulate tiller angle in rice
OsPIL15	Os01g0286100	None	tiller angle	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.
OsPIL15	Os01g0286100	None	tiller angle	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Rice phytochrome-interacting factor-like protein OsPIL15 regulates tiller angle through light and gravity signals in rice
OsPIL15	Os01g0286100	None	tiller angle	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Here, we report that OsPIL15 is, indeed, a rice PIF that negatively regulates tiller angle
OsPIL15	Os01g0286100	None	tiller angle	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Dominant-negative OsPIL15 plants displayed a larger tiller angle, which was associated with reduced shoot gravitropism
OsPIL15	Os01g0286100	None	tiller angle	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	We propose that OsPIL15 integrates light and gravity signals to regulate tiller angle in rice
OsPIMT1	Os08g0557000	LOC_Os08g44280	seed	Protein repair l -isoaspartyl methyltransferase 1 (PIMT1) in rice improves seed longevity by preserving embryo vigor and viability.	The germination percentage of transgenic seeds overexpressing OsPIMT1 increased 9-15 % compared to the WT seeds after 21-day of artificial aging, whereas seeds from the OsPIMT1 RNAi lines overaccumulated isoAsp in embryos and experienced rapid loss of seed germinability
OsPIMT1	Os08g0557000	LOC_Os08g44280	chloroplast	Protein repair l -isoaspartyl methyltransferase 1 (PIMT1) in rice improves seed longevity by preserving embryo vigor and viability.	Confocal visualization of the transient expression of OsPIMTs showed that OsPIMT2 was localized in the chloroplast and nucleus, whereas OsPIMT1 was predominately found in the cytosol
OsPIMT2	Os04g0481400	LOC_Os04g40540	chloroplast	Protein repair l -isoaspartyl methyltransferase 1 (PIMT1) in rice improves seed longevity by preserving embryo vigor and viability.	Confocal visualization of the transient expression of OsPIMTs showed that OsPIMT2 was localized in the chloroplast and nucleus, whereas OsPIMT1 was predominately found in the cytosol
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	auxin	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Adventitious root emergence and development were significantly inhibited in the OsPIN1 RNA interference (RNAi) transgenic plants, which was similar to the phenotype of NPA (N-1-naphthylphalamic acid, an auxin-transport inhibitor)-treated wild-type plants
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	auxin	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Taken together, these data suggest that OsPIN1 plays an important role in auxin-dependent adventitious root emergence and tillering
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	auxin	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	OsPIN1 was expressed in the vascular tissues and root primordial in a manner similar to AtPIN1
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Adventitious root emergence and development were significantly inhibited in the OsPIN1 RNA interference (RNAi) transgenic plants, which was similar to the phenotype of NPA (N-1-naphthylphalamic acid, an auxin-transport inhibitor)-treated wild-type plants
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Overexpression or suppression of the OsPIN1 expression through a transgenic approach resulted in changes of tiller numbers and shoot/root ratio
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Taken together, these data suggest that OsPIN1 plays an important role in auxin-dependent adventitious root emergence and tillering
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	ethylene	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	REH1, a rice EIR1 (Arabidopsis ethylene insensitive root 1)-like gene, is a putative auxin efflux carrier
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	tiller number	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Overexpression or suppression of the OsPIN1 expression through a transgenic approach resulted in changes of tiller numbers and shoot/root ratio
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	auxin	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	REH1, a rice EIR1 (Arabidopsis ethylene insensitive root 1)-like gene, is a putative auxin efflux carrier
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	REH1, a rice EIR1 (Arabidopsis ethylene insensitive root 1)-like gene, is a putative auxin efflux carrier
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	shoot	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Overexpression or suppression of the OsPIN1 expression through a transgenic approach resulted in changes of tiller numbers and shoot/root ratio
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	tillering	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Taken together, these data suggest that OsPIN1 plays an important role in auxin-dependent adventitious root emergence and tillering
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	tillering	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	adventitious root	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Adventitious root emergence and development were significantly inhibited in the OsPIN1 RNA interference (RNAi) transgenic plants, which was similar to the phenotype of NPA (N-1-naphthylphalamic acid, an auxin-transport inhibitor)-treated wild-type plants
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	adventitious root	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Taken together, these data suggest that OsPIN1 plays an important role in auxin-dependent adventitious root emergence and tillering
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	adventitious root	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	tiller	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Overexpression or suppression of the OsPIN1 expression through a transgenic approach resulted in changes of tiller numbers and shoot/root ratio
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	tiller	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	Taken together, these data suggest that OsPIN1 plays an important role in auxin-dependent adventitious root emergence and tillering
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	tiller	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	shoot	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	panicle	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	development	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	inflorescence	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	leaf	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 In the present study, OsPIN1b was disrupted by CRISPR/Cas9 technology, and its roles in modulating rice architecture and root gravitropism were investigated
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 IAA homeostasis was disturbed in ospin1b mutants, as evidenced by the changed sensitivity of shoot and root to NAA and NPA treatment, respectively
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Moreover, ospin1b mutants displayed a curly root phenotype cultured with tap water regardless of lighting conditions, while nutrient solution culture could partially rescue the curly root phenotype in light and almost completely abolish this phenotype in darkness, indicating the involvement of the integration of light and nutrient signals in root gravitropism regulation
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Additionally, amyloplast sedimentation was impaired in the peripheral tiers of the ospin1b root cap columella cell, while it was not the main contributor to the abnormal root gravitropism
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 These data suggest that OsPIN1b not only plays a vital role in regulating rice architecture but also functions in regulating root gravitropism by the integration of light and nutrient signals
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	growth	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	shoot	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 IAA homeostasis was disturbed in ospin1b mutants, as evidenced by the changed sensitivity of shoot and root to NAA and NPA treatment, respectively
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	auxin	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	panicle	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	tiller	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	stems	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Tissue-specific analysis showed that OsPIN1b was mainly expressed in roots, stems and sheaths at the seedling stage, and the transcript abundance was progressively decreased during the seedling stages
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	seedling	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Tissue-specific analysis showed that OsPIN1b was mainly expressed in roots, stems and sheaths at the seedling stage, and the transcript abundance was progressively decreased during the seedling stages
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	architecture	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	architecture	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 In the present study, OsPIN1b was disrupted by CRISPR/Cas9 technology, and its roles in modulating rice architecture and root gravitropism were investigated
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	architecture	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 These data suggest that OsPIN1b not only plays a vital role in regulating rice architecture but also functions in regulating root gravitropism by the integration of light and nutrient signals
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	iaa	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 IAA homeostasis was disturbed in ospin1b mutants, as evidenced by the changed sensitivity of shoot and root to NAA and NPA treatment, respectively
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	homeostasis	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 IAA homeostasis was disturbed in ospin1b mutants, as evidenced by the changed sensitivity of shoot and root to NAA and NPA treatment, respectively
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	auxin transport	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	height	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	plant height	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	adventitious root	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	tiller number	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	leaf angle	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	panicle length	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	primary root	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	IAA	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 IAA homeostasis was disturbed in ospin1b mutants, as evidenced by the changed sensitivity of shoot and root to NAA and NPA treatment, respectively
OsPIN1|REH1|PIN1b|OsPIN1b	Os02g0743400	LOC_Os02g50960	root number	Mutation of OsPIN1b by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	 Mutation of OsPIN1b resulted in pleiotropic phenotypes, including decreased growth of shoots and primary roots, reduced adventitious root number in rice seedlings, as well as shorter and narrower leaves, increased leaf angle, more tiller number and decreased plant height and panicle length at the late developmental stage
OsPIN1a	Os06g0232300	LOC_Os06g12610	shoot	Functional divergence of PIN1 paralogous genes in rice.	These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1a	Os06g0232300	LOC_Os06g12610	panicle	Functional divergence of PIN1 paralogous genes in rice.	These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1a	Os06g0232300	LOC_Os06g12610	development	Functional divergence of PIN1 paralogous genes in rice.	These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1a	Os06g0232300	LOC_Os06g12610	inflorescence	Functional divergence of PIN1 paralogous genes in rice.	These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1c	Os11g0137000	LOC_Os11g04190	shoot	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1c	Os11g0137000	LOC_Os11g04190	panicle	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1c	Os11g0137000	LOC_Os11g04190	development	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1c	Os11g0137000	LOC_Os11g04190	inflorescence	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1c	Os11g0137000	LOC_Os11g04190	auxin	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	 Cadmium rapidly downregulated the expression of the auxin efflux transporter genes OsPIN1b, OsPIN1c and OsPIN9 in the stele and LPR
OsPIN1c	Os11g0137000	LOC_Os11g04190	transporter	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	 Cadmium rapidly downregulated the expression of the auxin efflux transporter genes OsPIN1b, OsPIN1c and OsPIN9 in the stele and LPR
OsPIN1c	Os11g0137000	LOC_Os11g04190	cadmium	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	 Cadmium rapidly downregulated the expression of the auxin efflux transporter genes OsPIN1b, OsPIN1c and OsPIN9 in the stele and LPR
OsPIN1c	Os11g0137000	LOC_Os11g04190	development	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1c	Os11g0137000	LOC_Os11g04190	development	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1, and OsSPL14/IPA1, were differentially expressed in ospin1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development
OsPIN1c	Os11g0137000	LOC_Os11g04190	auxin	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.
OsPIN1c	Os11g0137000	LOC_Os11g04190	panicle	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.
OsPIN1c	Os11g0137000	LOC_Os11g04190	panicle	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1c	Os11g0137000	LOC_Os11g04190	panicle	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1, and OsSPL14/IPA1, were differentially expressed in ospin1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development
OsPIN1c	Os11g0137000	LOC_Os11g04190	tiller	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1c	Os11g0137000	LOC_Os11g04190	reproductive	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1, and OsSPL14/IPA1, were differentially expressed in ospin1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development
OsPIN1c	Os11g0137000	LOC_Os11g04190	height	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1c	Os11g0137000	LOC_Os11g04190	plant height	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1c	Os11g0137000	LOC_Os11g04190	reproductive development	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1, and OsSPL14/IPA1, were differentially expressed in ospin1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development
OsPIN1c	Os11g0137000	LOC_Os11g04190	tiller number	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1c	Os11g0137000	LOC_Os11g04190	young panicles	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Results showed that OsPIN1c and OsPIN1d were mainly expressed in young panicles and exhibited a redundant function
OsPIN1d	Os12g0133800	LOC_Os12g04000	shoot	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1d	Os12g0133800	LOC_Os12g04000	panicle	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1d	Os12g0133800	LOC_Os12g04000	development	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1d	Os12g0133800	LOC_Os12g04000	inflorescence	Functional divergence of PIN1 paralogous genes in rice.	 These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation
OsPIN1d	Os12g0133800	LOC_Os12g04000	development	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1d	Os12g0133800	LOC_Os12g04000	development	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1, and OsSPL14/IPA1, were differentially expressed in ospin1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development
OsPIN1d	Os12g0133800	LOC_Os12g04000	auxin	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.
OsPIN1d	Os12g0133800	LOC_Os12g04000	panicle	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.
OsPIN1d	Os12g0133800	LOC_Os12g04000	panicle	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1d	Os12g0133800	LOC_Os12g04000	panicle	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1, and OsSPL14/IPA1, were differentially expressed in ospin1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development
OsPIN1d	Os12g0133800	LOC_Os12g04000	tiller	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1d	Os12g0133800	LOC_Os12g04000	reproductive	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1, and OsSPL14/IPA1, were differentially expressed in ospin1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development
OsPIN1d	Os12g0133800	LOC_Os12g04000	height	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1d	Os12g0133800	LOC_Os12g04000	plant height	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1d	Os12g0133800	LOC_Os12g04000	reproductive development	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1, and OsSPL14/IPA1, were differentially expressed in ospin1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development
OsPIN1d	Os12g0133800	LOC_Os12g04000	tiller number	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d
OsPIN1d	Os12g0133800	LOC_Os12g04000	young panicles	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	 Results showed that OsPIN1c and OsPIN1d were mainly expressed in young panicles and exhibited a redundant function
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	shoot architecture	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The data suggest that OsPIN2 has a distinct auxin-dependent regulation pathway together with OsPIN1b and OsTAC1 controlling rice shoot architecture
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	auxin	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The expression patterns of the auxin reporter DR5::GUS and quantification of auxin distribution showed that OsPIN2 over-expression increased auxin transport from the shoot to the root-shoot junction, resulting in a non-tissue-specific accumulation of more free auxin at the root-shoot junction relative to WT
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	auxin	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	Over-expression of OsPIN2 enhanced auxin transport from shoots to roots, but did not alter the polar auxin pattern in the roots
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	auxin	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The data suggest that OsPIN2 has a distinct auxin-dependent regulation pathway together with OsPIN1b and OsTAC1 controlling rice shoot architecture
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	tiller angle	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	OsPIN2-over-expressing plants had suppressed the expression of a gravitropism-related gene OsLazy1 in the shoots, but unaltered expression of OsPIN1b and OsTAC1, which were reported as tiller angle controllers in rice
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The expression patterns of the auxin reporter DR5::GUS and quantification of auxin distribution showed that OsPIN2 over-expression increased auxin transport from the shoot to the root-shoot junction, resulting in a non-tissue-specific accumulation of more free auxin at the root-shoot junction relative to WT
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	Over-expression of OsPIN2 enhanced auxin transport from shoots to roots, but did not alter the polar auxin pattern in the roots
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	tiller number	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	height	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	architecture	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The data suggest that OsPIN2 has a distinct auxin-dependent regulation pathway together with OsPIN1b and OsTAC1 controlling rice shoot architecture
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	architecture	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	Altering OsPIN2 expression by genetic transformation can be directly used for modifying rice architecture
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	tiller	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	OsPIN2-over-expressing plants had suppressed the expression of a gravitropism-related gene OsLazy1 in the shoots, but unaltered expression of OsPIN1b and OsTAC1, which were reported as tiller angle controllers in rice
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	tiller	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	shoot	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The expression patterns of the auxin reporter DR5::GUS and quantification of auxin distribution showed that OsPIN2 over-expression increased auxin transport from the shoot to the root-shoot junction, resulting in a non-tissue-specific accumulation of more free auxin at the root-shoot junction relative to WT
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	shoot	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	Over-expression of OsPIN2 enhanced auxin transport from shoots to roots, but did not alter the polar auxin pattern in the roots
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	shoot	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	OsPIN2-over-expressing plants had suppressed the expression of a gravitropism-related gene OsLazy1 in the shoots, but unaltered expression of OsPIN1b and OsTAC1, which were reported as tiller angle controllers in rice
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	shoot	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The data suggest that OsPIN2 has a distinct auxin-dependent regulation pathway together with OsPIN1b and OsTAC1 controlling rice shoot architecture
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex.	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex.
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex.	In this study, it was found that the rice OsPIN2 overexpression line (OX1) had significantly reduced Al content in its cell wall and increased Al concentration in cell sap only in rice root tips relative to the wild-type (WT)
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	tolerance	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex.	Taken together, the data indicate that endocytic vesicular trafficking might contribute to Al internalization, and that overexpressing OsPIN2 enhances rice Al tolerance via elevated endocytic vesicular trafficking and Al internalization
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	Al tolerance	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex.	Taken together, the data indicate that endocytic vesicular trafficking might contribute to Al internalization, and that overexpressing OsPIN2 enhances rice Al tolerance via elevated endocytic vesicular trafficking and Al internalization
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	cell wall	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex.	In this study, it was found that the rice OsPIN2 overexpression line (OX1) had significantly reduced Al content in its cell wall and increased Al concentration in cell sap only in rice root tips relative to the wild-type (WT)
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	aluminium	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	aluminium internalization	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	vesicular	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	vesicular trafficking	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	gravitropic response	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	OsPIN2 was shown to play an important role in mediating root gravitropic responses in rice and was essential for plants to produce normal RGAs
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	gravitropic response	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	Taken together, our findings suggest that OsPIN2 plays an important role in root gravitropic responses and determining the root system architecture in rice by affecting polar auxin transport in the root tip
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	OsPIN2 was mainly expressed in roots and the base of shoots, and showed polar localization in the plasma membrane of root epidermal and cortex cells
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	OsPIN2 was shown to play an important role in mediating root gravitropic responses in rice and was essential for plants to produce normal RGAs
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	Taken together, our findings suggest that OsPIN2 plays an important role in root gravitropic responses and determining the root system architecture in rice by affecting polar auxin transport in the root tip
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	auxin	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	Taken together, our findings suggest that OsPIN2 plays an important role in root gravitropic responses and determining the root system architecture in rice by affecting polar auxin transport in the root tip
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	architecture	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	Taken together, our findings suggest that OsPIN2 plays an important role in root gravitropic responses and determining the root system architecture in rice by affecting polar auxin transport in the root tip
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	auxin transport	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	Taken together, our findings suggest that OsPIN2 plays an important role in root gravitropic responses and determining the root system architecture in rice by affecting polar auxin transport in the root tip
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	plasma membrane	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	OsPIN2 was mainly expressed in roots and the base of shoots, and showed polar localization in the plasma membrane of root epidermal and cortex cells
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root system architecture	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	Taken together, our findings suggest that OsPIN2 plays an important role in root gravitropic responses and determining the root system architecture in rice by affecting polar auxin transport in the root tip
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	OsPIN2, which encodes a member of the auxin efflux carrier proteins, is involved in root elongation growth and lateral root formation patterns via the regulation of auxin distribution in rice.	The OsPIN2 gene encodes a member of the auxin-efflux carrier proteins that possibly regulates the basipetal auxin flow from the root tip towards the root-elongation zone
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	auxin	OsPIN2, which encodes a member of the auxin efflux carrier proteins, is involved in root elongation growth and lateral root formation patterns via the regulation of auxin distribution in rice.	The OsPIN2 gene encodes a member of the auxin-efflux carrier proteins that possibly regulates the basipetal auxin flow from the root tip towards the root-elongation zone
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	R protein	OsPIN2, which encodes a member of the auxin efflux carrier proteins, is involved in root elongation growth and lateral root formation patterns via the regulation of auxin distribution in rice.	The OsPIN2 gene encodes a member of the auxin-efflux carrier proteins that possibly regulates the basipetal auxin flow from the root tip towards the root-elongation zone
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	However, overexpression of OsPIN2 caused a loss of sensitivity in the root response to P deficiency
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Compared to WT plants, overexpression of OsPIN2 had a shorter root length through decreased root cell elongation under control and LP
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	These results suggest that higher OsPIN2 expression regulates rice root growth and development maybe by changing auxin distribution in roots under LP condition
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	growth	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	growth	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	These results suggest that higher OsPIN2 expression regulates rice root growth and development maybe by changing auxin distribution in roots under LP condition
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	auxin	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Surprisingly, overexpression of OsPIN2 might increase auxin distribution in epidermis of root, resulting in greater RH formation but less LR development in OE plants than in WT plants in the control condition but levels similar of these under LP
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	auxin	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	These results suggest that higher OsPIN2 expression regulates rice root growth and development maybe by changing auxin distribution in roots under LP condition
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	development	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Surprisingly, overexpression of OsPIN2 might increase auxin distribution in epidermis of root, resulting in greater RH formation but less LR development in OE plants than in WT plants in the control condition but levels similar of these under LP
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	development	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	These results suggest that higher OsPIN2 expression regulates rice root growth and development maybe by changing auxin distribution in roots under LP condition
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	cell elongation	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Compared to WT plants, overexpression of OsPIN2 had a shorter root length through decreased root cell elongation under control and LP
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	phosphate	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	root length	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Compared to WT plants, overexpression of OsPIN2 had a shorter root length through decreased root cell elongation under control and LP
OsPIN2|LRA1	Os06g0660200	LOC_Os06g44970	epidermis	Overexpression of OsPIN2 Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Surprisingly, overexpression of OsPIN2 might increase auxin distribution in epidermis of root, resulting in greater RH formation but less LR development in OE plants than in WT plants in the control condition but levels similar of these under LP
OsPIN3t	Os01g0643300	LOC_Os01g45550	ethylene	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Overexpression of OsPIN3t led to improved drought tolerance, and GUS activity significantly increased when OsPIN3tpro::GUS plants were subjected to 20% polyethylene glycol stress
OsPIN3t	Os01g0643300	LOC_Os01g45550	seedling	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Moreover, knockdown of OsPIN3t caused crown root abnormalities in the seedling stage that could be phenocopied by treatment of wild-type plants with NPA, which indicated that OsPIN3t is involved in the control of polar auxin transport
OsPIN3t	Os01g0643300	LOC_Os01g45550	auxin	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	In this study, we identify a putative auxin efflux carrier gene in rice, OsPIN3t, which acts in auxin polar transport but is also involved in the drought stress response in rice
OsPIN3t	Os01g0643300	LOC_Os01g45550	auxin	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Moreover, knockdown of OsPIN3t caused crown root abnormalities in the seedling stage that could be phenocopied by treatment of wild-type plants with NPA, which indicated that OsPIN3t is involved in the control of polar auxin transport
OsPIN3t	Os01g0643300	LOC_Os01g45550	auxin	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Taken together, these results suggest that OsPIN3t is involved in auxin transport and the drought stress response, which suggests that a polar auxin transport pathway is involved in the regulation of the response to water stress in plants
OsPIN3t	Os01g0643300	LOC_Os01g45550	auxin	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance
OsPIN3t	Os01g0643300	LOC_Os01g45550	crown root	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Moreover, knockdown of OsPIN3t caused crown root abnormalities in the seedling stage that could be phenocopied by treatment of wild-type plants with NPA, which indicated that OsPIN3t is involved in the control of polar auxin transport
OsPIN3t	Os01g0643300	LOC_Os01g45550	drought	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	In this study, we identify a putative auxin efflux carrier gene in rice, OsPIN3t, which acts in auxin polar transport but is also involved in the drought stress response in rice
OsPIN3t	Os01g0643300	LOC_Os01g45550	drought	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Overexpression of OsPIN3t led to improved drought tolerance, and GUS activity significantly increased when OsPIN3tpro::GUS plants were subjected to 20% polyethylene glycol stress
OsPIN3t	Os01g0643300	LOC_Os01g45550	drought	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Taken together, these results suggest that OsPIN3t is involved in auxin transport and the drought stress response, which suggests that a polar auxin transport pathway is involved in the regulation of the response to water stress in plants
OsPIN3t	Os01g0643300	LOC_Os01g45550	drought	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance
OsPIN3t	Os01g0643300	LOC_Os01g45550	drought tolerance	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Overexpression of OsPIN3t led to improved drought tolerance, and GUS activity significantly increased when OsPIN3tpro::GUS plants were subjected to 20% polyethylene glycol stress
OsPIN3t	Os01g0643300	LOC_Os01g45550	drought tolerance	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance
OsPIN3t	Os01g0643300	LOC_Os01g45550	root	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Moreover, knockdown of OsPIN3t caused crown root abnormalities in the seedling stage that could be phenocopied by treatment of wild-type plants with NPA, which indicated that OsPIN3t is involved in the control of polar auxin transport
OsPIN3t	Os01g0643300	LOC_Os01g45550	crown	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance	Moreover, knockdown of OsPIN3t caused crown root abnormalities in the seedling stage that could be phenocopied by treatment of wild-type plants with NPA, which indicated that OsPIN3t is involved in the control of polar auxin transport
OsPIN3t	Os01g0643300	LOC_Os01g45550	seedlings	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 Transcriptome analysis of rice seedlings treated with SA revealed that the OsPIN3t auxin transporter is at the center of a GRN involving the coat protein clathrin
OsPIN3t	Os01g0643300	LOC_Os01g45550	root	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.
OsPIN3t	Os01g0643300	LOC_Os01g45550	root	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 SA inhibitory effect on the endocytosis of OsPIN3t was dependent on clathrin; however, the root growth and endocytic trafficking mediated by tyrphostin A23 (TyrA23) were independent of the pin3t mutant under SA treatment
OsPIN3t	Os01g0643300	LOC_Os01g45550	growth	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 SA inhibitory effect on the endocytosis of OsPIN3t was dependent on clathrin; however, the root growth and endocytic trafficking mediated by tyrphostin A23 (TyrA23) were independent of the pin3t mutant under SA treatment
OsPIN3t	Os01g0643300	LOC_Os01g45550	auxin	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 Transcriptome analysis of rice seedlings treated with SA revealed that the OsPIN3t auxin transporter is at the center of a GRN involving the coat protein clathrin
OsPIN3t	Os01g0643300	LOC_Os01g45550	salicylic acid	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.
OsPIN3t	Os01g0643300	LOC_Os01g45550	transporter	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 Transcriptome analysis of rice seedlings treated with SA revealed that the OsPIN3t auxin transporter is at the center of a GRN involving the coat protein clathrin
OsPIN3t	Os01g0643300	LOC_Os01g45550	root growth	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.
OsPIN3t	Os01g0643300	LOC_Os01g45550	root growth	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 SA inhibitory effect on the endocytosis of OsPIN3t was dependent on clathrin; however, the root growth and endocytic trafficking mediated by tyrphostin A23 (TyrA23) were independent of the pin3t mutant under SA treatment
OsPIN3t	Os01g0643300	LOC_Os01g45550	auxin transport	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 Transcriptome analysis of rice seedlings treated with SA revealed that the OsPIN3t auxin transporter is at the center of a GRN involving the coat protein clathrin
OsPIN3t	Os01g0643300	LOC_Os01g45550	sa	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 Transcriptome analysis of rice seedlings treated with SA revealed that the OsPIN3t auxin transporter is at the center of a GRN involving the coat protein clathrin
OsPIN3t	Os01g0643300	LOC_Os01g45550	sa	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 SA inhibitory effect on the endocytosis of OsPIN3t was dependent on clathrin; however, the root growth and endocytic trafficking mediated by tyrphostin A23 (TyrA23) were independent of the pin3t mutant under SA treatment
OsPIN3t	Os01g0643300	LOC_Os01g45550	SA	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 Transcriptome analysis of rice seedlings treated with SA revealed that the OsPIN3t auxin transporter is at the center of a GRN involving the coat protein clathrin
OsPIN3t	Os01g0643300	LOC_Os01g45550	SA	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 SA inhibitory effect on the endocytosis of OsPIN3t was dependent on clathrin; however, the root growth and endocytic trafficking mediated by tyrphostin A23 (TyrA23) were independent of the pin3t mutant under SA treatment
OsPIN3t	Os01g0643300	LOC_Os01g45550	 sa 	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 Transcriptome analysis of rice seedlings treated with SA revealed that the OsPIN3t auxin transporter is at the center of a GRN involving the coat protein clathrin
OsPIN3t	Os01g0643300	LOC_Os01g45550	 sa 	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	 SA inhibitory effect on the endocytosis of OsPIN3t was dependent on clathrin; however, the root growth and endocytic trafficking mediated by tyrphostin A23 (TyrA23) were independent of the pin3t mutant under SA treatment
OsPIN5b	Os08g0529000	LOC_Os08g41720	leaf	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Over-expression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed setting rate, panicle length and yield parameters
OsPIN5b	Os08g0529000	LOC_Os08g41720	root	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Over-expression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed setting rate, panicle length and yield parameters
OsPIN5b	Os08g0529000	LOC_Os08g41720	root	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Conversely, reduced expression of OsPIN5b results in higher tiller number, more vigorous root system, longer panicles and increased yield
OsPIN5b	Os08g0529000	LOC_Os08g41720	shoot	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Over-expression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed setting rate, panicle length and yield parameters
OsPIN5b	Os08g0529000	LOC_Os08g41720	panicle	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Over-expression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed setting rate, panicle length and yield parameters
OsPIN5b	Os08g0529000	LOC_Os08g41720	tiller	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Over-expression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed setting rate, panicle length and yield parameters
OsPIN5b	Os08g0529000	LOC_Os08g41720	tiller	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Conversely, reduced expression of OsPIN5b results in higher tiller number, more vigorous root system, longer panicles and increased yield
OsPIN5b	Os08g0529000	LOC_Os08g41720	seed	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Over-expression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed setting rate, panicle length and yield parameters
OsPIN5b	Os08g0529000	LOC_Os08g41720	yield	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.
OsPIN5b	Os08g0529000	LOC_Os08g41720	yield	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Over-expression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed setting rate, panicle length and yield parameters
OsPIN5b	Os08g0529000	LOC_Os08g41720	yield	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Conversely, reduced expression of OsPIN5b results in higher tiller number, more vigorous root system, longer panicles and increased yield
OsPIN5b	Os08g0529000	LOC_Os08g41720	architecture	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.
OsPIN5b	Os08g0529000	LOC_Os08g41720	auxin	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.
OsPIN5b	Os08g0529000	LOC_Os08g41720	auxin	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Over-expression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed setting rate, panicle length and yield parameters
OsPIN5b	Os08g0529000	LOC_Os08g41720	auxin	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	We show that OsPIN5b is an ER-localized protein that participates in auxin homeostasis, transport and distribution in vivo
OsPIN5b	Os08g0529000	LOC_Os08g41720	tiller number	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Over-expression of the auxin efflux carrier-like gene OsPIN5b causes pleiotropic effects, mainly reducing plant height, leaf and tiller number, shoot and root biomass, seed setting rate, panicle length and yield parameters
OsPIN5b	Os08g0529000	LOC_Os08g41720	tiller number	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	Conversely, reduced expression of OsPIN5b results in higher tiller number, more vigorous root system, longer panicles and increased yield
OsPIN5b	Os08g0529000	LOC_Os08g41720	plant architecture	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.	OsPIN5b modulates rice plant architecture and yield by changing auxin homeostasis, transport and distribution.
OsPIN9	Os01g0802700	LOC_Os01g58860	auxin	OsPIN9, an auxin efflux carrier, is required for the regulation of rice tiller bud outgrowth by ammonium	 Heterologous expression in Xenopus oocytes and yeast demonstrated that OsPIN9 is a functional auxin efflux transporter
OsPIN9	Os01g0802700	LOC_Os01g58860	tiller	OsPIN9, an auxin efflux carrier, is required for the regulation of rice tiller bud outgrowth by ammonium	 Compared with wild-type plants, ospin9 mutants had fewer tillers, and OsPIN9 overexpression increased the tiller number
OsPIN9	Os01g0802700	LOC_Os01g58860	tiller	OsPIN9, an auxin efflux carrier, is required for the regulation of rice tiller bud outgrowth by ammonium	 Additionally, OsPIN9 was mainly expressed in vascular tissue of the junction and tiller buds, and encoded a membrane-localised protein
OsPIN9	Os01g0802700	LOC_Os01g58860	transporter	OsPIN9, an auxin efflux carrier, is required for the regulation of rice tiller bud outgrowth by ammonium	 Heterologous expression in Xenopus oocytes and yeast demonstrated that OsPIN9 is a functional auxin efflux transporter
OsPIN9	Os01g0802700	LOC_Os01g58860	tiller number	OsPIN9, an auxin efflux carrier, is required for the regulation of rice tiller bud outgrowth by ammonium	 Compared with wild-type plants, ospin9 mutants had fewer tillers, and OsPIN9 overexpression increased the tiller number
OsPIN9	Os01g0802700	LOC_Os01g58860	auxin	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	 Cadmium rapidly downregulated the expression of the auxin efflux transporter genes OsPIN1b, OsPIN1c and OsPIN9 in the stele and LPR
OsPIN9	Os01g0802700	LOC_Os01g58860	transporter	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	 Cadmium rapidly downregulated the expression of the auxin efflux transporter genes OsPIN1b, OsPIN1c and OsPIN9 in the stele and LPR
OsPIN9	Os01g0802700	LOC_Os01g58860	cadmium	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	 Cadmium rapidly downregulated the expression of the auxin efflux transporter genes OsPIN1b, OsPIN1c and OsPIN9 in the stele and LPR
OsPIN9	Os01g0802700	LOC_Os01g58860	seedlings	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 The results showed that OsPIN9 expression was dramatically and rapidly suppressed by chilling stress (4°C) in rice seedlings
OsPIN9	Os01g0802700	LOC_Os01g58860	auxin	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.
OsPIN9	Os01g0802700	LOC_Os01g58860	auxin	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 ospin9 mutant roots and shoots were less sensitive to 1-naphthaleneacetic acid (NAA) and N-1-naphthylphthalamic acid (NPA), indicating the disturbance of auxin homeostasis in the ospin9 mutants
OsPIN9	Os01g0802700	LOC_Os01g58860	stress	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 The results showed that OsPIN9 expression was dramatically and rapidly suppressed by chilling stress (4°C) in rice seedlings
OsPIN9	Os01g0802700	LOC_Os01g58860	stress	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 The chilling tolerance assay showed that ospin9 mutants were more tolerant to chilling stress than wild-type (WT) plants, as evidenced by increased survival rate, decreased membrane permeability, and reduced lipid peroxidation
OsPIN9	Os01g0802700	LOC_Os01g58860	defense response	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 However, the expression of well-known C-REPEAT BINDING FACTOR (CBF)/DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 (DREB)-dependent transcriptional regulatory pathway and Ca(2+) signaling genes was significantly induced only under normal conditions, implying that defense responses in ospin9 mutants have probably been triggered in advance under normal conditions
OsPIN9	Os01g0802700	LOC_Os01g58860	defense	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 However, the expression of well-known C-REPEAT BINDING FACTOR (CBF)/DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 (DREB)-dependent transcriptional regulatory pathway and Ca(2+) signaling genes was significantly induced only under normal conditions, implying that defense responses in ospin9 mutants have probably been triggered in advance under normal conditions
OsPIN9	Os01g0802700	LOC_Os01g58860	tolerance	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.
OsPIN9	Os01g0802700	LOC_Os01g58860	tolerance	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 The chilling tolerance assay showed that ospin9 mutants were more tolerant to chilling stress than wild-type (WT) plants, as evidenced by increased survival rate, decreased membrane permeability, and reduced lipid peroxidation
OsPIN9	Os01g0802700	LOC_Os01g58860	tolerance	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 Consistently, antioxidant enzyme activity, including catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD), improved significantly during the early chilling treatments, while was kept similar to WT at the later stage of chilling treatment, implying that the enhanced chilling tolerance of ospin9 mutants is mainly attributed to the earlier induction of ROS and the improved ROS scavenging ability at the subsequent stages of chilling treatment
OsPIN9	Os01g0802700	LOC_Os01g58860	tolerance	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 In summary, our results strongly suggest that the OsPIN9 gene regulates chilling tolerance by modulating ROS homeostasis in rice
OsPIN9	Os01g0802700	LOC_Os01g58860	homeostasis	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.
OsPIN9	Os01g0802700	LOC_Os01g58860	homeostasis	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 ospin9 mutant roots and shoots were less sensitive to 1-naphthaleneacetic acid (NAA) and N-1-naphthylphthalamic acid (NPA), indicating the disturbance of auxin homeostasis in the ospin9 mutants
OsPIN9	Os01g0802700	LOC_Os01g58860	homeostasis	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 In summary, our results strongly suggest that the OsPIN9 gene regulates chilling tolerance by modulating ROS homeostasis in rice
OsPIN9	Os01g0802700	LOC_Os01g58860	chilling	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.
OsPIN9	Os01g0802700	LOC_Os01g58860	chilling	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 The results showed that OsPIN9 expression was dramatically and rapidly suppressed by chilling stress (4°C) in rice seedlings
OsPIN9	Os01g0802700	LOC_Os01g58860	chilling	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 The chilling tolerance assay showed that ospin9 mutants were more tolerant to chilling stress than wild-type (WT) plants, as evidenced by increased survival rate, decreased membrane permeability, and reduced lipid peroxidation
OsPIN9	Os01g0802700	LOC_Os01g58860	chilling	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 Histochemical staining of reactive oxygen species (ROS) by 3&#x27;3-diaminobenzidine (DAB) and nitroblue tetrazolium (NBT) showed that ospin9 mutants accumulated more ROS than WT at the early stage of chilling stress, while less ROS was observed at the later stage of chilling treatment in ospin9 mutants
OsPIN9	Os01g0802700	LOC_Os01g58860	chilling	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 Consistently, antioxidant enzyme activity, including catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD), improved significantly during the early chilling treatments, while was kept similar to WT at the later stage of chilling treatment, implying that the enhanced chilling tolerance of ospin9 mutants is mainly attributed to the earlier induction of ROS and the improved ROS scavenging ability at the subsequent stages of chilling treatment
OsPIN9	Os01g0802700	LOC_Os01g58860	chilling	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 In summary, our results strongly suggest that the OsPIN9 gene regulates chilling tolerance by modulating ROS homeostasis in rice
OsPIN9	Os01g0802700	LOC_Os01g58860	chilling stress	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 The results showed that OsPIN9 expression was dramatically and rapidly suppressed by chilling stress (4°C) in rice seedlings
OsPIN9	Os01g0802700	LOC_Os01g58860	chilling stress	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 The chilling tolerance assay showed that ospin9 mutants were more tolerant to chilling stress than wild-type (WT) plants, as evidenced by increased survival rate, decreased membrane permeability, and reduced lipid peroxidation
OsPIN9	Os01g0802700	LOC_Os01g58860	chilling stress	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 Histochemical staining of reactive oxygen species (ROS) by 3&#x27;3-diaminobenzidine (DAB) and nitroblue tetrazolium (NBT) showed that ospin9 mutants accumulated more ROS than WT at the early stage of chilling stress, while less ROS was observed at the later stage of chilling treatment in ospin9 mutants
OsPIN9	Os01g0802700	LOC_Os01g58860	transcriptional regulator	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 However, the expression of well-known C-REPEAT BINDING FACTOR (CBF)/DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 (DREB)-dependent transcriptional regulatory pathway and Ca(2+) signaling genes was significantly induced only under normal conditions, implying that defense responses in ospin9 mutants have probably been triggered in advance under normal conditions
OsPIN9	Os01g0802700	LOC_Os01g58860	reactive oxygen species	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.
OsPIN9	Os01g0802700	LOC_Os01g58860	reactive oxygen species	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 Histochemical staining of reactive oxygen species (ROS) by 3&#x27;3-diaminobenzidine (DAB) and nitroblue tetrazolium (NBT) showed that ospin9 mutants accumulated more ROS than WT at the early stage of chilling stress, while less ROS was observed at the later stage of chilling treatment in ospin9 mutants
OsPIN9	Os01g0802700	LOC_Os01g58860	catalase	CRISPR/Cas9-mediated mutation in auxin efflux carrier OsPIN9 confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	 Consistently, antioxidant enzyme activity, including catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD), improved significantly during the early chilling treatments, while was kept similar to WT at the later stage of chilling treatment, implying that the enhanced chilling tolerance of ospin9 mutants is mainly attributed to the earlier induction of ROS and the improved ROS scavenging ability at the subsequent stages of chilling treatment
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	seed germination	The role of water channel proteins and nitric oxide signaling in rice seed germination	Partial silencing of the water channel genes, OsPIP1;1 and OsPIP1;3, reduced seed germination while over-expression of OsPIP1;3 promoted seed germination under water-stress conditions
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	root	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination	OsPIP1;1 is one of the most abundant aquaporins in rice leaves and roots and is highly responsible to environmental stresses
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	root	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination	Moderate expression of OsPIP1;1 increased rice seed yield, salt resistance, root hydraulic conductivity, and seed germination rate
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	salt	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination	Moderate expression of OsPIP1;1 increased rice seed yield, salt resistance, root hydraulic conductivity, and seed germination rate
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	salt	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	seed	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination	Moderate expression of OsPIP1;1 increased rice seed yield, salt resistance, root hydraulic conductivity, and seed germination rate
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	seed	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	seed germination	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination	Moderate expression of OsPIP1;1 increased rice seed yield, salt resistance, root hydraulic conductivity, and seed germination rate
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	seed germination	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	yield	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination	Moderate expression of OsPIP1;1 increased rice seed yield, salt resistance, root hydraulic conductivity, and seed germination rate
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	seed	The role of water channel proteins and nitric oxide signaling in rice seed germination	Partial silencing of the water channel genes, OsPIP1;1 and OsPIP1;3, reduced seed germination while over-expression of OsPIP1;3 promoted seed germination under water-stress conditions
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	seed	The role of water channel proteins and nitric oxide signaling in rice seed germination	Exogenous NO stimulated the transcription of OsPIP1;1, OsPIP1;2, OsPIP1;3 and OsPIP2;8 in germinating seeds
OsPIP1;1|RWC1	Os02g0666200	LOC_Os02g44630	aquaporin water channel	Functional reconstitution of a rice aquaporin water channel, PIP1;1, by a micro-batchwise methodology	Functional reconstitution of a rice aquaporin water channel, PIP1;1, by a micro-batchwise methodology
OsPIP1;2	Os04g0559700	LOC_Os04g47220	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP1;2	Os04g0559700	LOC_Os04g47220	seed	The role of water channel proteins and nitric oxide signaling in rice seed germination	Exogenous NO stimulated the transcription of OsPIP1;1, OsPIP1;2, OsPIP1;3 and OsPIP2;8 in germinating seeds
OsPIP1;2	Os04g0559700	LOC_Os04g47220	root	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP1;2	Os04g0559700	LOC_Os04g47220	shoot	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP1;2	Os04g0559700	LOC_Os04g47220	leaf	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Our results suggest that OsPIP1;2 modulates rice growth and grain yield by facilitating leaf CO2 diffusion, which increases both the net CO2 assimilation rate and sucrose transport
OsPIP1;2	Os04g0559700	LOC_Os04g47220	growth	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Our results suggest that OsPIP1;2 modulates rice growth and grain yield by facilitating leaf CO2 diffusion, which increases both the net CO2 assimilation rate and sucrose transport
OsPIP1;2	Os04g0559700	LOC_Os04g47220	grain	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Moreover, the grain yield of rice lines overexpressing OsPIP1;2 was determined
OsPIP1;2	Os04g0559700	LOC_Os04g47220	grain	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Our results suggest that OsPIP1;2 modulates rice growth and grain yield by facilitating leaf CO2 diffusion, which increases both the net CO2 assimilation rate and sucrose transport
OsPIP1;2	Os04g0559700	LOC_Os04g47220	photosynthesis	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Here, we investigated the function of the aquaporin OsPIP1;2 in CO2 diffusion-associated photosynthesis and phloem sucrose transport
OsPIP1;2	Os04g0559700	LOC_Os04g47220	grain yield	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Moreover, the grain yield of rice lines overexpressing OsPIP1;2 was determined
OsPIP1;2	Os04g0559700	LOC_Os04g47220	grain yield	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Our results suggest that OsPIP1;2 modulates rice growth and grain yield by facilitating leaf CO2 diffusion, which increases both the net CO2 assimilation rate and sucrose transport
OsPIP1;2	Os04g0559700	LOC_Os04g47220	yield	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.
OsPIP1;2	Os04g0559700	LOC_Os04g47220	yield	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Moreover, the grain yield of rice lines overexpressing OsPIP1;2 was determined
OsPIP1;2	Os04g0559700	LOC_Os04g47220	yield	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Our results suggest that OsPIP1;2 modulates rice growth and grain yield by facilitating leaf CO2 diffusion, which increases both the net CO2 assimilation rate and sucrose transport
OsPIP1;2	Os04g0559700	LOC_Os04g47220	phloem	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.
OsPIP1;2	Os04g0559700	LOC_Os04g47220	phloem	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Here, we investigated the function of the aquaporin OsPIP1;2 in CO2 diffusion-associated photosynthesis and phloem sucrose transport
OsPIP1;2	Os04g0559700	LOC_Os04g47220	plasma membrane	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	OsPIP1;2 was localized to the plasma membrane and the relative expression of OsPIP1;2 was approximately 5-fold higher in leaves in the presence of an elevated CO2 concentration
OsPIP1;2	Os04g0559700	LOC_Os04g47220	sucrose	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.
OsPIP1;2	Os04g0559700	LOC_Os04g47220	sucrose	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Here, we investigated the function of the aquaporin OsPIP1;2 in CO2 diffusion-associated photosynthesis and phloem sucrose transport
OsPIP1;2	Os04g0559700	LOC_Os04g47220	sucrose	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	Our results suggest that OsPIP1;2 modulates rice growth and grain yield by facilitating leaf CO2 diffusion, which increases both the net CO2 assimilation rate and sucrose transport
OsPIP2;1	Os07g0448800	LOC_Os07g26690	resistance	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 Together, our data demonstrate that OsRINGzf1 positively regulates drought resistance through promoting the degradation of OsPIP2;1 to enhance water retention capacity in rice
OsPIP2;1	Os07g0448800	LOC_Os07g26690	drought	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 Together, our data demonstrate that OsRINGzf1 positively regulates drought resistance through promoting the degradation of OsPIP2;1 to enhance water retention capacity in rice
OsPIP2;1	Os07g0448800	LOC_Os07g26690	drought resistance	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 Together, our data demonstrate that OsRINGzf1 positively regulates drought resistance through promoting the degradation of OsPIP2;1 to enhance water retention capacity in rice
OsPIP2;2	Os02g0629200	LOC_Os02g41860	drought	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	In concomitant tests of all OsPIPs, four genes (OsPIP1;3, OsPIP2;1, OsPIP2;2, and OsPIP2;4) were induced to express in leaves of rice plants following a physiological drought stress, while OsPIP2;2 was expressed to the highest level
OsPIP2;2	Os02g0629200	LOC_Os02g41860	drought	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	In rice protoplasts, H2O transport and drought-tolerant responses, which included expression of marker genes of drought tolerance pathway, were considerably enhanced by OsPIP2;2 overexpression but strongly inhibited by the gene silencing
OsPIP2;2	Os02g0629200	LOC_Os02g41860	drought	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	Furthermore, OsPIP2;2 played a role in maintenance of the cell membrane integrity and effectively protected rice cells from electrolyte leakage caused by the physiological drought stress
OsPIP2;2	Os02g0629200	LOC_Os02g41860	drought	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	These results suggest that OsPIP2;2 is a predominant facilitator of H2O transport in relevance to drought tolerance in the plant
OsPIP2;2	Os02g0629200	LOC_Os02g41860	tolerance	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	In rice protoplasts, H2O transport and drought-tolerant responses, which included expression of marker genes of drought tolerance pathway, were considerably enhanced by OsPIP2;2 overexpression but strongly inhibited by the gene silencing
OsPIP2;2	Os02g0629200	LOC_Os02g41860	tolerance	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	These results suggest that OsPIP2;2 is a predominant facilitator of H2O transport in relevance to drought tolerance in the plant
OsPIP2;2	Os02g0629200	LOC_Os02g41860	drought tolerance	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	In rice protoplasts, H2O transport and drought-tolerant responses, which included expression of marker genes of drought tolerance pathway, were considerably enhanced by OsPIP2;2 overexpression but strongly inhibited by the gene silencing
OsPIP2;2	Os02g0629200	LOC_Os02g41860	drought tolerance	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	These results suggest that OsPIP2;2 is a predominant facilitator of H2O transport in relevance to drought tolerance in the plant
OsPIP2;2	Os02g0629200	LOC_Os02g41860	stress	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	Furthermore, OsPIP2;2 played a role in maintenance of the cell membrane integrity and effectively protected rice cells from electrolyte leakage caused by the physiological drought stress
OsPIP2;2	Os02g0629200	LOC_Os02g41860	plasma membrane	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	After de novo expression in tobacco protoplasts, OsPIP2;2 exceeded OsPIP1;3, OsPIP2;1, and OsPIP2;4 to support H2O transport across the plasma membranes
OsPIP2;2	Os02g0629200	LOC_Os02g41860	drought stress	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	In concomitant tests of all OsPIPs, four genes (OsPIP1;3, OsPIP2;1, OsPIP2;2, and OsPIP2;4) were induced to express in leaves of rice plants following a physiological drought stress, while OsPIP2;2 was expressed to the highest level
OsPIP2;2	Os02g0629200	LOC_Os02g41860	drought stress	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses	Furthermore, OsPIP2;2 played a role in maintenance of the cell membrane integrity and effectively protected rice cells from electrolyte leakage caused by the physiological drought stress
OsPIP2;3	Os04g0521100	LOC_Os04g44060	drought sensitivity	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice	Plasma membrane receptor-like kinase leaf panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice
OsPIP2;4	Os07g0448100	LOC_Os07g26630	boron	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity
OsPIP2;4	Os07g0448100	LOC_Os07g26630	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Transcript analysis demonstrated that the expression of OsPIP2;4 and OsPIP2;7 were downregulated in shoots and strongly upregulated in rice roots by high B treatment
OsPIP2;4	Os07g0448100	LOC_Os07g26630	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Arabidopsis lines overexpressing OsPIP2;4 and OsPIP2;7 showed significantly higher biomass production and greater root length, however there was no difference in B accumulation in long term uptake assay
OsPIP2;4	Os07g0448100	LOC_Os07g26630	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Short-term uptake assay using tracer B ((1)(0)B) in shoots and roots demonstrated increased (1)(0)B accumulation in Arabidopsis lines expressing OsPIP2;4 and OsPIP2;7, compare to wild type control plants
OsPIP2;4	Os07g0448100	LOC_Os07g26630	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Efflux assay of B in the roots showed that (1)(0)B was effluxed from the Arabidopsis transgenic plants overexpressing OsPIP2;4 or OsPIP2;7 during the initial 1-h of assay
OsPIP2;4	Os07g0448100	LOC_Os07g26630	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	These data indicate that OsPIP2;4 and OsPIP2;7 are involved in mediating B transport in rice and provide tolerance via efflux of excess B from roots and shoot tissues
OsPIP2;4	Os07g0448100	LOC_Os07g26630	shoot	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Transcript analysis demonstrated that the expression of OsPIP2;4 and OsPIP2;7 were downregulated in shoots and strongly upregulated in rice roots by high B treatment
OsPIP2;4	Os07g0448100	LOC_Os07g26630	shoot	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Short-term uptake assay using tracer B ((1)(0)B) in shoots and roots demonstrated increased (1)(0)B accumulation in Arabidopsis lines expressing OsPIP2;4 and OsPIP2;7, compare to wild type control plants
OsPIP2;4	Os07g0448100	LOC_Os07g26630	shoot	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	These data indicate that OsPIP2;4 and OsPIP2;7 are involved in mediating B transport in rice and provide tolerance via efflux of excess B from roots and shoot tissues
OsPIP2;4	Os07g0448100	LOC_Os07g26630	biomass	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Arabidopsis lines overexpressing OsPIP2;4 and OsPIP2;7 showed significantly higher biomass production and greater root length, however there was no difference in B accumulation in long term uptake assay
OsPIP2;4	Os07g0448100	LOC_Os07g26630	biomass	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	Overexpression of OsPIP2;4, OsPIP2;6, and OsPIP2;7 in Arabidopsis yielded enhanced arsenite tolerance and higher biomass accumulation
OsPIP2;4	Os07g0448100	LOC_Os07g26630	shoot	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP2;4	Os07g0448100	LOC_Os07g26630	root	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP2;4	Os07g0448100	LOC_Os07g26630	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP2;4	Os07g0448100	LOC_Os07g26630	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	Heterologous expression of OsPIP2;4, OsPIP2;6, and OsPIP2;7 in Xenopus laevis oocytes significantly increased the uptake of arsenite
OsPIP2;4	Os07g0448100	LOC_Os07g26630	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	Overexpression of OsPIP2;4, OsPIP2;6, and OsPIP2;7 in Arabidopsis yielded enhanced arsenite tolerance and higher biomass accumulation
OsPIP2;4	Os07g0448100	LOC_Os07g26630	root	Influence of low air humidity and low root temperature on water uptake, growth and aquaporin expression in rice plants	Expression levels of two root-specific aquaporin genes, OsPIP2;4 and OsPIP2;5, were increased significantly after 6 and 13 d of LRT exposure
OsPIP2;5	Os07g0448400	LOC_Os07g26660	root	Influence of low air humidity and low root temperature on water uptake, growth and aquaporin expression in rice plants	Expression levels of two root-specific aquaporin genes, OsPIP2;4 and OsPIP2;5, were increased significantly after 6 and 13 d of LRT exposure
OsPIP2;6	Os04g0233400	LOC_Os04g16450	biomass	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	Overexpression of OsPIP2;4, OsPIP2;6, and OsPIP2;7 in Arabidopsis yielded enhanced arsenite tolerance and higher biomass accumulation
OsPIP2;6	Os04g0233400	LOC_Os04g16450	shoot	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP2;6	Os04g0233400	LOC_Os04g16450	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP2;6	Os04g0233400	LOC_Os04g16450	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	Heterologous expression of OsPIP2;4, OsPIP2;6, and OsPIP2;7 in Xenopus laevis oocytes significantly increased the uptake of arsenite
OsPIP2;6	Os04g0233400	LOC_Os04g16450	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	Overexpression of OsPIP2;4, OsPIP2;6, and OsPIP2;7 in Arabidopsis yielded enhanced arsenite tolerance and higher biomass accumulation
OsPIP2;6	Os04g0233400	LOC_Os04g16450	root	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP2;7	Os09g0541000	LOC_Os09g36930	root	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP2;7	Os09g0541000	LOC_Os09g36930	biomass	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	Overexpression of OsPIP2;4, OsPIP2;6, and OsPIP2;7 in Arabidopsis yielded enhanced arsenite tolerance and higher biomass accumulation
OsPIP2;7	Os09g0541000	LOC_Os09g36930	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Transcript analysis demonstrated that the expression of OsPIP2;4 and OsPIP2;7 were downregulated in shoots and strongly upregulated in rice roots by high B treatment
OsPIP2;7	Os09g0541000	LOC_Os09g36930	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Arabidopsis lines overexpressing OsPIP2;4 and OsPIP2;7 showed significantly higher biomass production and greater root length, however there was no difference in B accumulation in long term uptake assay
OsPIP2;7	Os09g0541000	LOC_Os09g36930	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Short-term uptake assay using tracer B ((1)(0)B) in shoots and roots demonstrated increased (1)(0)B accumulation in Arabidopsis lines expressing OsPIP2;4 and OsPIP2;7, compare to wild type control plants
OsPIP2;7	Os09g0541000	LOC_Os09g36930	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Efflux assay of B in the roots showed that (1)(0)B was effluxed from the Arabidopsis transgenic plants overexpressing OsPIP2;4 or OsPIP2;7 during the initial 1-h of assay
OsPIP2;7	Os09g0541000	LOC_Os09g36930	root	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	These data indicate that OsPIP2;4 and OsPIP2;7 are involved in mediating B transport in rice and provide tolerance via efflux of excess B from roots and shoot tissues
OsPIP2;7	Os09g0541000	LOC_Os09g36930	boron	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity
OsPIP2;7	Os09g0541000	LOC_Os09g36930	shoot	Characterization of OsPIP2;7, a water channel protein in rice	We have previously shown that a rice gene, OsPIP2;7, was generally up-regulated in roots but down-regulated in shoots at the early stage of chilling stress
OsPIP2;7	Os09g0541000	LOC_Os09g36930	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP2;7	Os09g0541000	LOC_Os09g36930	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	Heterologous expression of OsPIP2;4, OsPIP2;6, and OsPIP2;7 in Xenopus laevis oocytes significantly increased the uptake of arsenite
OsPIP2;7	Os09g0541000	LOC_Os09g36930	arsenite	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	Overexpression of OsPIP2;4, OsPIP2;6, and OsPIP2;7 in Arabidopsis yielded enhanced arsenite tolerance and higher biomass accumulation
OsPIP2;7	Os09g0541000	LOC_Os09g36930	shoot	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Transcript analysis demonstrated that the expression of OsPIP2;4 and OsPIP2;7 were downregulated in shoots and strongly upregulated in rice roots by high B treatment
OsPIP2;7	Os09g0541000	LOC_Os09g36930	shoot	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Short-term uptake assay using tracer B ((1)(0)B) in shoots and roots demonstrated increased (1)(0)B accumulation in Arabidopsis lines expressing OsPIP2;4 and OsPIP2;7, compare to wild type control plants
OsPIP2;7	Os09g0541000	LOC_Os09g36930	shoot	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	These data indicate that OsPIP2;4 and OsPIP2;7 are involved in mediating B transport in rice and provide tolerance via efflux of excess B from roots and shoot tissues
OsPIP2;7	Os09g0541000	LOC_Os09g36930	chilling	Characterization of OsPIP2;7, a water channel protein in rice	We have previously shown that a rice gene, OsPIP2;7, was generally up-regulated in roots but down-regulated in shoots at the early stage of chilling stress
OsPIP2;7	Os09g0541000	LOC_Os09g36930	temperature	Characterization of OsPIP2;7, a water channel protein in rice	Furthermore, OsPIP2;7 enhanced the transpiration rate and tolerance to low temperature when overexpressed in rice
OsPIP2;7	Os09g0541000	LOC_Os09g36930	temperature	Characterization of OsPIP2;7, a water channel protein in rice	These results indicated that OsPIP2;7 was involved in rapid water transport and maintenance of the water balance in cells, and ultimately improves the tolerance of yeast and rice to low temperature stress
OsPIP2;7	Os09g0541000	LOC_Os09g36930	shoot	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants	qRT-PCR analysis of PIPs in rice root and shoot tissues revealed a significant down regulation of transcripts encoding OsPIP1;2, OsPIP1;3, OsPIP2;4, OsPIP2;6, and OsPIP2;7 in response to arsenite treatment
OsPIP2;7	Os09g0541000	LOC_Os09g36930	root	Characterization of OsPIP2;7, a water channel protein in rice	We have previously shown that a rice gene, OsPIP2;7, was generally up-regulated in roots but down-regulated in shoots at the early stage of chilling stress
OsPIP2;7	Os09g0541000	LOC_Os09g36930	biomass	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity	Arabidopsis lines overexpressing OsPIP2;4 and OsPIP2;7 showed significantly higher biomass production and greater root length, however there was no difference in B accumulation in long term uptake assay
OsPIP5K1	Os03g0705300	LOC_Os03g49800	growth	DWT1/DWL2 act together with OsPIP5K1 to regulate plant uniform growth in rice.	DWT1/DWL2 act together with OsPIP5K1 to regulate plant uniform growth in rice.
OsPIP5K1	Os03g0705300	LOC_Os03g49800	growth	DWT1/DWL2 act together with OsPIP5K1 to regulate plant uniform growth in rice.	Overall, our data suggest that nuclear localized OsPIP5K1 acts with DWT1 and/or DWL2 to coordinate the uniform growth of rice shoots, likely through nuclear phosphoinositide signals, which provides insights into the regulation of rice uniformity via a largely unexplored plant nuclear signaling pathway
OsPIP5K1	Os03g0705300	LOC_Os03g49800	shoot	DWT1/DWL2 act together with OsPIP5K1 to regulate plant uniform growth in rice.	Mutation of OsPIP5K1 compounds the dwarf dwt1 phenotype but abolishes the main shoot dominance
OsPIP5K1	Os03g0705300	LOC_Os03g49800	dwarf	DWT1/DWL2 act together with OsPIP5K1 to regulate plant uniform growth in rice.	Mutation of OsPIP5K1 compounds the dwarf dwt1 phenotype but abolishes the main shoot dominance
OsPIPK1	Os03g0701800	LOC_Os03g49510	leaf	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes	oral development in antisense plants, as well as leaf emergence measurement indicating delayed leaf development under OsPIPK1 deficiency, a common phenotype observed with earlier flowering
OsPIPK1	Os03g0701800	LOC_Os03g49510	leaf development	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes	oral development in antisense plants, as well as leaf emergence measurement indicating delayed leaf development under OsPIPK1 deficiency, a common phenotype observed with earlier flowering
OsPIPK1	Os03g0701800	LOC_Os03g49510	flower	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes	RT-PCR analysis indicated that OsPIPK1 was expressed almost constitutively in roots, shoots, stems, leaves and flowers, and upregulated following treatment with plant hormones or application of various stresses
OsPIPK1	Os03g0701800	LOC_Os03g49510	flower	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes	oral development in antisense plants, as well as leaf emergence measurement indicating delayed leaf development under OsPIPK1 deficiency, a common phenotype observed with earlier flowering
OsPIPK1	Os03g0701800	LOC_Os03g49510	flower	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes	RT-PCR analysis and cDNA chip technology were used to examine transcripts of various genes in the transgenic plants and the results showed altered transcriptions of several flowering-time or - identity related genes, suggesting that OsPIPK1 is involved in rice heading through regulation of
OsPIPK1	Os03g0701800	LOC_Os03g49510	root	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes	RT-PCR analysis indicated that OsPIPK1 was expressed almost constitutively in roots, shoots, stems, leaves and flowers, and upregulated following treatment with plant hormones or application of various stresses
OsPIPK1	Os03g0701800	LOC_Os03g49510	floral	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes
OsPIPK1	Os03g0701800	LOC_Os03g49510	stem	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes	RT-PCR analysis indicated that OsPIPK1 was expressed almost constitutively in roots, shoots, stems, leaves and flowers, and upregulated following treatment with plant hormones or application of various stresses
OsPIPK1	Os03g0701800	LOC_Os03g49510	shoot	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes	RT-PCR analysis indicated that OsPIPK1 was expressed almost constitutively in roots, shoots, stems, leaves and flowers, and upregulated following treatment with plant hormones or application of various stresses
OsPITP6	Os02g0321500	LOC_Os02g21630	growth	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Together with transcriptome analysis of ospitp6 rice plants and phenotypic analysis of grafted Arabidopsis chimeras, these results suggest that chloroplastic Sec14-like proteins play an essential role in growth modulations in response to changes in Pi availability, although their function is critical for plant growth under any Pi condition
OsPITP6	Os02g0321500	LOC_Os02g21630	growth	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 The superior traits of OsPITP6-overexpressing rice plants also highlight the potential of OsPITP6 and its homologs in other crops as additional tools for improving Pi uptake and plant growth in low Pi environments
OsPITP6	Os02g0321500	LOC_Os02g21630	grain	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Importantly, overexpression of OsPITP6 increased tiller number and grain yield in rice
OsPITP6	Os02g0321500	LOC_Os02g21630	tiller	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Importantly, overexpression of OsPITP6 increased tiller number and grain yield in rice
OsPITP6	Os02g0321500	LOC_Os02g21630	grain yield	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Importantly, overexpression of OsPITP6 increased tiller number and grain yield in rice
OsPITP6	Os02g0321500	LOC_Os02g21630	yield	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Importantly, overexpression of OsPITP6 increased tiller number and grain yield in rice
OsPITP6	Os02g0321500	LOC_Os02g21630	plant growth	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 By contrast, overexpression of AtPITP7 and OsPITP6 enhanced Pi uptake and plant growth, especially under limited Pi supply
OsPITP6	Os02g0321500	LOC_Os02g21630	plant growth	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Together with transcriptome analysis of ospitp6 rice plants and phenotypic analysis of grafted Arabidopsis chimeras, these results suggest that chloroplastic Sec14-like proteins play an essential role in growth modulations in response to changes in Pi availability, although their function is critical for plant growth under any Pi condition
OsPITP6	Os02g0321500	LOC_Os02g21630	plant growth	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 The superior traits of OsPITP6-overexpressing rice plants also highlight the potential of OsPITP6 and its homologs in other crops as additional tools for improving Pi uptake and plant growth in low Pi environments
OsPITP6	Os02g0321500	LOC_Os02g21630	tiller number	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Importantly, overexpression of OsPITP6 increased tiller number and grain yield in rice
OsPITP6	Os02g0321500	LOC_Os02g21630	Pi	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 By contrast, overexpression of AtPITP7 and OsPITP6 enhanced Pi uptake and plant growth, especially under limited Pi supply
OsPITP6	Os02g0321500	LOC_Os02g21630	Pi	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Targeted metabolome analysis of glycerolipids in leaves and chloroplasts revealed that inactivation of OsPITP6 alters phospholipid contents, independent of Pi availability, diminishing the reduction in phospholipid content and increase in glycolipid content induced by Pi deficiency; meanwhile, overexpression of OsPITP6 enhanced Pi deficiency induced metabolic alterations
OsPITP6	Os02g0321500	LOC_Os02g21630	Pi	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Together with transcriptome analysis of ospitp6 rice plants and phenotypic analysis of grafted Arabidopsis chimeras, these results suggest that chloroplastic Sec14-like proteins play an essential role in growth modulations in response to changes in Pi availability, although their function is critical for plant growth under any Pi condition
OsPITP6	Os02g0321500	LOC_Os02g21630	Pi	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 The superior traits of OsPITP6-overexpressing rice plants also highlight the potential of OsPITP6 and its homologs in other crops as additional tools for improving Pi uptake and plant growth in low Pi environments
OsPITP6	Os02g0321500	LOC_Os02g21630	pi	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 By contrast, overexpression of AtPITP7 and OsPITP6 enhanced Pi uptake and plant growth, especially under limited Pi supply
OsPITP6	Os02g0321500	LOC_Os02g21630	pi	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Targeted metabolome analysis of glycerolipids in leaves and chloroplasts revealed that inactivation of OsPITP6 alters phospholipid contents, independent of Pi availability, diminishing the reduction in phospholipid content and increase in glycolipid content induced by Pi deficiency; meanwhile, overexpression of OsPITP6 enhanced Pi deficiency induced metabolic alterations
OsPITP6	Os02g0321500	LOC_Os02g21630	pi	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Together with transcriptome analysis of ospitp6 rice plants and phenotypic analysis of grafted Arabidopsis chimeras, these results suggest that chloroplastic Sec14-like proteins play an essential role in growth modulations in response to changes in Pi availability, although their function is critical for plant growth under any Pi condition
OsPITP6	Os02g0321500	LOC_Os02g21630	pi	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 The superior traits of OsPITP6-overexpressing rice plants also highlight the potential of OsPITP6 and its homologs in other crops as additional tools for improving Pi uptake and plant growth in low Pi environments
OsPITP6	Os02g0321500	LOC_Os02g21630	 pi 	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 By contrast, overexpression of AtPITP7 and OsPITP6 enhanced Pi uptake and plant growth, especially under limited Pi supply
OsPITP6	Os02g0321500	LOC_Os02g21630	 pi 	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Targeted metabolome analysis of glycerolipids in leaves and chloroplasts revealed that inactivation of OsPITP6 alters phospholipid contents, independent of Pi availability, diminishing the reduction in phospholipid content and increase in glycolipid content induced by Pi deficiency; meanwhile, overexpression of OsPITP6 enhanced Pi deficiency induced metabolic alterations
OsPITP6	Os02g0321500	LOC_Os02g21630	 pi 	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 Together with transcriptome analysis of ospitp6 rice plants and phenotypic analysis of grafted Arabidopsis chimeras, these results suggest that chloroplastic Sec14-like proteins play an essential role in growth modulations in response to changes in Pi availability, although their function is critical for plant growth under any Pi condition
OsPITP6	Os02g0321500	LOC_Os02g21630	 pi 	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 The superior traits of OsPITP6-overexpressing rice plants also highlight the potential of OsPITP6 and its homologs in other crops as additional tools for improving Pi uptake and plant growth in low Pi environments
OsPITP6	Os02g0321500	LOC_Os02g21630	Pi uptake	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 By contrast, overexpression of AtPITP7 and OsPITP6 enhanced Pi uptake and plant growth, especially under limited Pi supply
OsPITP6	Os02g0321500	LOC_Os02g21630	Pi uptake	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	 The superior traits of OsPITP6-overexpressing rice plants also highlight the potential of OsPITP6 and its homologs in other crops as additional tools for improving Pi uptake and plant growth in low Pi environments
OsPK1	Os11g0148500	LOC_Os11g05110	root	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Quantitative RT-PCR and GUS staining analyses exhibited that OsPK1 was expressed mainly in leaf mesophyll cells, phloem companion cells in stems, and cortical parenchyma cells in roots
OsPK1	Os11g0148500	LOC_Os11g05110	growth	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Here, we identified a novel rice dwarf mutant, designated as ospk1, showing dwarfism, panicle enclosure, reduced seed set, and outgrowth of axillary buds from culm nodes
OsPK1	Os11g0148500	LOC_Os11g05110	leaf	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Quantitative RT-PCR and GUS staining analyses exhibited that OsPK1 was expressed mainly in leaf mesophyll cells, phloem companion cells in stems, and cortical parenchyma cells in roots
OsPK1	Os11g0148500	LOC_Os11g05110	leaf	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	The contents of glucose and fructose were markedly accumulated in flag leaf blade and panicle of ospk1
OsPK1	Os11g0148500	LOC_Os11g05110	culm	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Here, we identified a novel rice dwarf mutant, designated as ospk1, showing dwarfism, panicle enclosure, reduced seed set, and outgrowth of axillary buds from culm nodes
OsPK1	Os11g0148500	LOC_Os11g05110	dwarf	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Here, we identified a novel rice dwarf mutant, designated as ospk1, showing dwarfism, panicle enclosure, reduced seed set, and outgrowth of axillary buds from culm nodes
OsPK1	Os11g0148500	LOC_Os11g05110	dwarf	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice
OsPK1	Os11g0148500	LOC_Os11g05110	panicle	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Here, we identified a novel rice dwarf mutant, designated as ospk1, showing dwarfism, panicle enclosure, reduced seed set, and outgrowth of axillary buds from culm nodes
OsPK1	Os11g0148500	LOC_Os11g05110	panicle	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	The contents of glucose and fructose were markedly accumulated in flag leaf blade and panicle of ospk1
OsPK1	Os11g0148500	LOC_Os11g05110	panicle	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	The sucrose level in panicle of ospk1 was decreased by approximately 84%
OsPK1	Os11g0148500	LOC_Os11g05110	panicle	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice
OsPK1	Os11g0148500	LOC_Os11g05110	seed	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Here, we identified a novel rice dwarf mutant, designated as ospk1, showing dwarfism, panicle enclosure, reduced seed set, and outgrowth of axillary buds from culm nodes
OsPK1	Os11g0148500	LOC_Os11g05110	stem	Downregulation of OsPK1, a cytosolic pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice	Quantitative RT-PCR and GUS staining analyses exhibited that OsPK1 was expressed mainly in leaf mesophyll cells, phloem companion cells in stems, and cortical parenchyma cells in roots
OsPK1	Os11g0148500	LOC_Os11g05110	mitochondria	Mitochondria-Associated Pyruvate Kinase Complexes Regulate Grain Filling in Rice	Both OsPK1 and OsPK4 localized to the mitochondria and cytosol and were recruited to the mitochondria by OsPK3
OsPK10|Pid2	Os06g0494100	LOC_Os06g29810	seedling	Molecular cloning and biochemical characterization of a receptor-like serine/threonine kinase from rice	OsPK10 transcripts appear to be more abundant in shoots than in roots of rice seedlings
OsPK10|Pid2	Os06g0494100	LOC_Os06g29810	shoot	Molecular cloning and biochemical characterization of a receptor-like serine/threonine kinase from rice	OsPK10 transcripts appear to be more abundant in shoots than in roots of rice seedlings
OsPK10|Pid2	Os06g0494100	LOC_Os06g29810	root	Molecular cloning and biochemical characterization of a receptor-like serine/threonine kinase from rice	OsPK10 transcripts appear to be more abundant in shoots than in roots of rice seedlings
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	grain	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	grain	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Altogether, these results denote new insights into the role of OsPK2 in plant seed development, especially in starch synthesis, compound granules formation and grain filling, which would be useful for genetic improvement of high yield and rice grain quality
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	seed	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Altogether, these results denote new insights into the role of OsPK2 in plant seed development, especially in starch synthesis, compound granules formation and grain filling, which would be useful for genetic improvement of high yield and rice grain quality
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	starch	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	starch	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	The normal starch compound granules were drastically reduced and more single granules filled the endosperm cells of ospk2
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	starch	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Altogether, these results denote new insights into the role of OsPK2 in plant seed development, especially in starch synthesis, compound granules formation and grain filling, which would be useful for genetic improvement of high yield and rice grain quality
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	map-based cloning	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Map-based cloning of OsPK2 indicated that it encodes a pyruvate kinase (PK, ATP: pyruvate 2-O-phosphotranferase, EC 2
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	yield	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Altogether, these results denote new insights into the role of OsPK2 in plant seed development, especially in starch synthesis, compound granules formation and grain filling, which would be useful for genetic improvement of high yield and rice grain quality
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	endosperm	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	endosperm	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	The normal starch compound granules were drastically reduced and more single granules filled the endosperm cells of ospk2
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	grain filling	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	grain filling	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Altogether, these results denote new insights into the role of OsPK2 in plant seed development, especially in starch synthesis, compound granules formation and grain filling, which would be useful for genetic improvement of high yield and rice grain quality
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	Kinase	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	Kinase	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Map-based cloning of OsPK2 indicated that it encodes a pyruvate kinase (PK, ATP: pyruvate 2-O-phosphotranferase, EC 2
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	seed development	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Altogether, these results denote new insights into the role of OsPK2 in plant seed development, especially in starch synthesis, compound granules formation and grain filling, which would be useful for genetic improvement of high yield and rice grain quality
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	quality	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Altogether, these results denote new insights into the role of OsPK2 in plant seed development, especially in starch synthesis, compound granules formation and grain filling, which would be useful for genetic improvement of high yield and rice grain quality
OsPK2|W59|OsPKpalpha1	Os07g0181000	LOC_Os07g08340	grain quality	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Altogether, these results denote new insights into the role of OsPK2 in plant seed development, especially in starch synthesis, compound granules formation and grain filling, which would be useful for genetic improvement of high yield and rice grain quality
OsPK3	Os04g0677500	LOC_Os04g58110	leaf	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	OsPK3 was constitutively expressed  but had relatively higher expression levels in leaf and developing caryopsis and  specific expression signals in tissues involved in sucrose transport and unloading, supporting its biological function in regulation of grain filling by affecting sucrose translocation
OsPK3	Os04g0677500	LOC_Os04g58110	grain	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	The loss of function of OsPK3 caused reduced PK activity and sucrose translocation defects from source to sink in rice, which led to compromised grain filling
OsPK3	Os04g0677500	LOC_Os04g58110	grain	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	OsPK3 was constitutively expressed  but had relatively higher expression levels in leaf and developing caryopsis and  specific expression signals in tissues involved in sucrose transport and unloading, supporting its biological function in regulation of grain filling by affecting sucrose translocation
OsPK3	Os04g0677500	LOC_Os04g58110	mitochondria	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	Both OsPK1 and OsPK4 localized to the mitochondria and cytosol and were recruited to the mitochondria by OsPK3
OsPK3	Os04g0677500	LOC_Os04g58110	grain filling	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	The loss of function of OsPK3 caused reduced PK activity and sucrose translocation defects from source to sink in rice, which led to compromised grain filling
OsPK3	Os04g0677500	LOC_Os04g58110	grain filling	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	OsPK3 was constitutively expressed  but had relatively higher expression levels in leaf and developing caryopsis and  specific expression signals in tissues involved in sucrose transport and unloading, supporting its biological function in regulation of grain filling by affecting sucrose translocation
OsPK3	Os04g0677500	LOC_Os04g58110	sucrose	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	The loss of function of OsPK3 caused reduced PK activity and sucrose translocation defects from source to sink in rice, which led to compromised grain filling
OsPK3	Os04g0677500	LOC_Os04g58110	sucrose	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	OsPK3 was constitutively expressed  but had relatively higher expression levels in leaf and developing caryopsis and  specific expression signals in tissues involved in sucrose transport and unloading, supporting its biological function in regulation of grain filling by affecting sucrose translocation
OsPK3	Os04g0677500	LOC_Os04g58110	sucrose translocation	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	The loss of function of OsPK3 caused reduced PK activity and sucrose translocation defects from source to sink in rice, which led to compromised grain filling
OsPK3	Os04g0677500	LOC_Os04g58110	sucrose translocation	Mitochondria-associated pyruvate kinase complexes regulate grain filling in rice.	OsPK3 was constitutively expressed  but had relatively higher expression levels in leaf and developing caryopsis and  specific expression signals in tissues involved in sucrose transport and unloading, supporting its biological function in regulation of grain filling by affecting sucrose translocation
OsPK5	Os11g0216000	LOC_Os11g10980	growth	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 The disruption of OsPK5 function resulted in slow germination and seedling growth during seed germination, blocked glycolytic metabolism, caused glucose accumulation, decreased energy levels, and affected the GA/ABA balance
OsPK5	Os11g0216000	LOC_Os11g10980	Kinase	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 Natural variation in OsPK5 function altered the activity of pyruvate kinase
OsPK5	Os11g0216000	LOC_Os11g10980	kinase	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 Natural variation in OsPK5 function altered the activity of pyruvate kinase
OsPK5	Os11g0216000	LOC_Os11g10980	seedling	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 The disruption of OsPK5 function resulted in slow germination and seedling growth during seed germination, blocked glycolytic metabolism, caused glucose accumulation, decreased energy levels, and affected the GA/ABA balance
OsPK5	Os11g0216000	LOC_Os11g10980	seed	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.
OsPK5	Os11g0216000	LOC_Os11g10980	seed	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 The disruption of OsPK5 function resulted in slow germination and seedling growth during seed germination, blocked glycolytic metabolism, caused glucose accumulation, decreased energy levels, and affected the GA/ABA balance
OsPK5	Os11g0216000	LOC_Os11g10980	seed	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 Taken together, our results provide novel insights into the roles of OsPK5 in seed germination, and facilitate its application in rice breeding to improve seed vigour
OsPK5	Os11g0216000	LOC_Os11g10980	seed germination	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.
OsPK5	Os11g0216000	LOC_Os11g10980	seed germination	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 The disruption of OsPK5 function resulted in slow germination and seedling growth during seed germination, blocked glycolytic metabolism, caused glucose accumulation, decreased energy levels, and affected the GA/ABA balance
OsPK5	Os11g0216000	LOC_Os11g10980	seed germination	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 Taken together, our results provide novel insights into the roles of OsPK5 in seed germination, and facilitate its application in rice breeding to improve seed vigour
OsPK5	Os11g0216000	LOC_Os11g10980	breeding	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 Taken together, our results provide novel insights into the roles of OsPK5 in seed germination, and facilitate its application in rice breeding to improve seed vigour
OsPK5	Os11g0216000	LOC_Os11g10980	seedling growth	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study.	 The disruption of OsPK5 function resulted in slow germination and seedling growth during seed germination, blocked glycolytic metabolism, caused glucose accumulation, decreased energy levels, and affected the GA/ABA balance
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	tapetal	Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.)	Expression of YY2 mRNA was confined to the tapetal cells
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	microspore	Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.)	Two cDNAs (YY1 and YY2), representing genes that are specifically expressed in anthers at the uninucleate microspore stage, were isolated and characterized
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	anther	Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.)	Two cDNAs (YY1 and YY2), representing genes that are specifically expressed in anthers at the uninucleate microspore stage, were isolated and characterized
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	pollen	OsLAP6/OsPKS1, an orthologue of Arabidopsis PKSA/LAP6, is critical for proper pollen exine formation.	We identified a rice mutant oslap6 with complete male sterile phenotype caused by defects in pollen exine formation
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	sterile	OsLAP6/OsPKS1, an orthologue of Arabidopsis PKSA/LAP6, is critical for proper pollen exine formation.	We identified a rice mutant oslap6 with complete male sterile phenotype caused by defects in pollen exine formation
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	pollen exine formation	OsLAP6/OsPKS1, an orthologue of Arabidopsis PKSA/LAP6, is critical for proper pollen exine formation.	We identified a rice mutant oslap6 with complete male sterile phenotype caused by defects in pollen exine formation
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	pollen	OsPKS1 is required for sexine layer formation, which shows functional conservation between rice and Arabidopsis.	Cytological observations revealed that abnormal bacula deposition and ubisch body structures for sexine formation led to pollen rupture in ospks1
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	anther	OsPKS1 is required for sexine layer formation, which shows functional conservation between rice and Arabidopsis.	The expression analysis showed that the OsPKS1 was highly expressed in tapetal cells and anther locules from stage 9 to stage 11 during anther development in rice
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	development	OsPKS1 is required for sexine layer formation, which shows functional conservation between rice and Arabidopsis.	The expression analysis showed that the OsPKS1 was highly expressed in tapetal cells and anther locules from stage 9 to stage 11 during anther development in rice
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	sterile	OsPKS1 is required for sexine layer formation, which shows functional conservation between rice and Arabidopsis.	The OsPKS1 knockout mutants obtained by Crispr-Cas9-mediated editing exhibited a complete male sterile phenotype
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	tapetal	OsPKS1 is required for sexine layer formation, which shows functional conservation between rice and Arabidopsis.	The expression analysis showed that the OsPKS1 was highly expressed in tapetal cells and anther locules from stage 9 to stage 11 during anther development in rice
OsPKS1|YY2|OsLAP6	Os10g0484800	LOC_Os10g34360	anther development	OsPKS1 is required for sexine layer formation, which shows functional conservation between rice and Arabidopsis.	The expression analysis showed that the OsPKS1 was highly expressed in tapetal cells and anther locules from stage 9 to stage 11 during anther development in rice
OsPKS2	Os07g0411300	LOC_Os07g22850	pollen	The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.	The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.
OsPKS2	Os07g0411300	LOC_Os07g22850	pollen	The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.	Recombinant OsPKS2 catalyzed the condensation of fatty acyl-CoA with malonyl-CoA to generate triketide and tetraketide α-pyrones, the main components of pollen exine
OsPKS2	Os07g0411300	LOC_Os07g22850	sterile	The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.	Indeed, the ospks2 mutant had defective exine patterning and was male sterile
OsPKS2	Os07g0411300	LOC_Os07g22850	pollen	OsPKS2 is required for rice male fertility by participating in pollen wall formation.	OsPKS2 is required for rice male fertility by participating in pollen wall formation.
OsPKS2	Os07g0411300	LOC_Os07g22850	pollen	OsPKS2 is required for rice male fertility by participating in pollen wall formation.	Results suggested that OsPKS2 is critical for pollen wall formation, and plays a conserved but differentiated role in sporopollenin biosynthesis from Arabidopsis
OsPKS2	Os07g0411300	LOC_Os07g22850	sterile	OsPKS2 is required for rice male fertility by participating in pollen wall formation.	Two other allelic mutants of OsPKS2 were generated using the CRISPR/Cas9 system and are also completely male sterile
OsPKS2	Os07g0411300	LOC_Os07g22850	fertility	OsPKS2 is required for rice male fertility by participating in pollen wall formation.	OsPKS2 is required for rice male fertility by participating in pollen wall formation.
OsPKS2	Os07g0411300	LOC_Os07g22850	fertility	OsPKS2 is required for rice male fertility by participating in pollen wall formation.	This result thus further confirmed that OsPKS2 controls rice male fertility
OsPKS2	Os07g0411300	LOC_Os07g22850	pollen wall	OsPKS2 is required for rice male fertility by participating in pollen wall formation.	OsPKS2 is required for rice male fertility by participating in pollen wall formation.
OsPKS2	Os07g0411300	LOC_Os07g22850	pollen wall	OsPKS2 is required for rice male fertility by participating in pollen wall formation.	Results suggested that OsPKS2 is critical for pollen wall formation, and plays a conserved but differentiated role in sporopollenin biosynthesis from Arabidopsis
OsPLB	Os11g0655800	LOC_Os11g43510	seed	OsPLB gene expressed during seed germination encodes a phospholipase in rice.	OsPLB gene expressed during seed germination encodes a phospholipase in rice.
OsPLB	Os11g0655800	LOC_Os11g43510	seed germination	OsPLB gene expressed during seed germination encodes a phospholipase in rice.	OsPLB gene expressed during seed germination encodes a phospholipase in rice.
OsPLC1	Os07g0694000	LOC_Os07g49330	salt	A phosphoinositide-specific phospholipase C pathway elicits stress-induced Ca(2+) signals and confers salt tolerance to rice.	Salt stress induced the recruitment of OsPLC1 from cytoplasm to plasma membrane, where it hydrolyzed PtdIns4P
OsPLC1	Os07g0694000	LOC_Os07g49330	salt stress	A phosphoinositide-specific phospholipase C pathway elicits stress-induced Ca(2+) signals and confers salt tolerance to rice.	Salt stress induced the recruitment of OsPLC1 from cytoplasm to plasma membrane, where it hydrolyzed PtdIns4P
OsPLC1	Os07g0694000	LOC_Os07g49330	stress	A phosphoinositide-specific phospholipase C pathway elicits stress-induced Ca(2+) signals and confers salt tolerance to rice.	Salt stress induced the recruitment of OsPLC1 from cytoplasm to plasma membrane, where it hydrolyzed PtdIns4P
OsPLC1	Os07g0694000	LOC_Os07g49330	cytoplasm	A phosphoinositide-specific phospholipase C pathway elicits stress-induced Ca(2+) signals and confers salt tolerance to rice.	Salt stress induced the recruitment of OsPLC1 from cytoplasm to plasma membrane, where it hydrolyzed PtdIns4P
OsPLC1	Os07g0694000	LOC_Os07g49330	plasma membrane	A phosphoinositide-specific phospholipase C pathway elicits stress-induced Ca(2+) signals and confers salt tolerance to rice.	Salt stress induced the recruitment of OsPLC1 from cytoplasm to plasma membrane, where it hydrolyzed PtdIns4P
OsPLC1	Os07g0694000	LOC_Os07g49330	grain	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 In addition, the enlargement of grain size was observed in OE plants, however, the reduction of grain size was noticed in osplc1 mutants
OsPLC1	Os07g0694000	LOC_Os07g49330	grain	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 The increase in the grain size and the grain yield of OE lines were associated with the improvement of cell length and expression levels of a set of genes related to cell expansion, contrarily, the decrease in osplc1 mutant grain size and yield were linked to declined cell length and expression levels of related genes
OsPLC1	Os07g0694000	LOC_Os07g49330	grain	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 No significant differences, in terms of the grain quality of mature seeds, were found in OE and osplc1 mutants, with compared to those in Nipponbare (Nip)
OsPLC1	Os07g0694000	LOC_Os07g49330	grain	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 In summary, our study suggests that OsPLC1 could modulate rice flowering time and grain size
OsPLC1	Os07g0694000	LOC_Os07g49330	grain size	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	Preferential expression of OsPLC1 is detected at the heading stage of rice, OsPLC1 overexpression results in early flowering, increased-grain size and yield; however, opposing phenotypes produced in the osplc1 mutants
OsPLC1	Os07g0694000	LOC_Os07g49330	grain size	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 In addition, the enlargement of grain size was observed in OE plants, however, the reduction of grain size was noticed in osplc1 mutants
OsPLC1	Os07g0694000	LOC_Os07g49330	grain size	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 The increase in the grain size and the grain yield of OE lines were associated with the improvement of cell length and expression levels of a set of genes related to cell expansion, contrarily, the decrease in osplc1 mutant grain size and yield were linked to declined cell length and expression levels of related genes
OsPLC1	Os07g0694000	LOC_Os07g49330	grain size	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 In summary, our study suggests that OsPLC1 could modulate rice flowering time and grain size
OsPLC1	Os07g0694000	LOC_Os07g49330	grain yield	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 The increase in the grain size and the grain yield of OE lines were associated with the improvement of cell length and expression levels of a set of genes related to cell expansion, contrarily, the decrease in osplc1 mutant grain size and yield were linked to declined cell length and expression levels of related genes
OsPLC1	Os07g0694000	LOC_Os07g49330	grain quality	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 No significant differences, in terms of the grain quality of mature seeds, were found in OE and osplc1 mutants, with compared to those in Nipponbare (Nip)
OsPLC1	Os07g0694000	LOC_Os07g49330	quality	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 No significant differences, in terms of the grain quality of mature seeds, were found in OE and osplc1 mutants, with compared to those in Nipponbare (Nip)
OsPLC1	Os07g0694000	LOC_Os07g49330	yield	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 The increase in the grain size and the grain yield of OE lines were associated with the improvement of cell length and expression levels of a set of genes related to cell expansion, contrarily, the decrease in osplc1 mutant grain size and yield were linked to declined cell length and expression levels of related genes
OsPLC1	Os07g0694000	LOC_Os07g49330	flowering time	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 The expression levels of subset genes, which are involved in the control of flowering time in rice, were altered in the plants of OE and osplc1
OsPLC1	Os07g0694000	LOC_Os07g49330	flowering time	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 In summary, our study suggests that OsPLC1 could modulate rice flowering time and grain size
OsPLC1	Os07g0694000	LOC_Os07g49330	flowering	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 OsPLC1 overexpression (OE) produced rice plants with early flowering, whereas OsPLC1 loss-of-function led to delay in flowering
OsPLC1	Os07g0694000	LOC_Os07g49330	flowering	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 The expression levels of subset genes, which are involved in the control of flowering time in rice, were altered in the plants of OE and osplc1
OsPLC1	Os07g0694000	LOC_Os07g49330	flowering	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 In summary, our study suggests that OsPLC1 could modulate rice flowering time and grain size
OsPLC1	Os07g0694000	LOC_Os07g49330	cell expansion	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size in rice.	 The increase in the grain size and the grain yield of OE lines were associated with the improvement of cell length and expression levels of a set of genes related to cell expansion, contrarily, the decrease in osplc1 mutant grain size and yield were linked to declined cell length and expression levels of related genes
OsPLC4	Os05g0127200	LOC_Os05g03610	growth	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	Two independent knockout mutants, plc4-1 and plc4-2, exhibited decreased seedling growth and survival rate whereas overexpression of OsPLC4 improved survival rate under high salinity and water deficiency, compared with wild-type (WT)
OsPLC4	Os05g0127200	LOC_Os05g03610	seedling	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	Two independent knockout mutants, plc4-1 and plc4-2, exhibited decreased seedling growth and survival rate whereas overexpression of OsPLC4 improved survival rate under high salinity and water deficiency, compared with wild-type (WT)
OsPLC4	Os05g0127200	LOC_Os05g03610	seedling	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	The results indicate that OsPLC4 modulates the activity of two signaling pathways, PA and Ca2+ , to affect rice seedling response to osmotic stress
OsPLC4	Os05g0127200	LOC_Os05g03610	salinity	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	Two independent knockout mutants, plc4-1 and plc4-2, exhibited decreased seedling growth and survival rate whereas overexpression of OsPLC4 improved survival rate under high salinity and water deficiency, compared with wild-type (WT)
OsPLC4	Os05g0127200	LOC_Os05g03610	salt	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	Knockout of OsPLC4 attenuated salt-induced increase of phosphatidic acid (PA) whereas overexpression of OsPLC4 decreased the level of PI4P and PIP2 under salt treatment
OsPLC4	Os05g0127200	LOC_Os05g03610	salt	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	In addition, the loss of OsPLC4 compromised the increase of inositol triphosphate (IP3 ) and free cytoplasmic Ca2+ ([Ca2+ ]cyt ) and inhibited the induction of genes involved in Ca2+ sensor and osmotic stress response to salt stress
OsPLC4	Os05g0127200	LOC_Os05g03610	salt stress	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	In addition, the loss of OsPLC4 compromised the increase of inositol triphosphate (IP3 ) and free cytoplasmic Ca2+ ([Ca2+ ]cyt ) and inhibited the induction of genes involved in Ca2+ sensor and osmotic stress response to salt stress
OsPLC4	Os05g0127200	LOC_Os05g03610	stress	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	In addition, the loss of OsPLC4 compromised the increase of inositol triphosphate (IP3 ) and free cytoplasmic Ca2+ ([Ca2+ ]cyt ) and inhibited the induction of genes involved in Ca2+ sensor and osmotic stress response to salt stress
OsPLC4	Os05g0127200	LOC_Os05g03610	stress	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	The results indicate that OsPLC4 modulates the activity of two signaling pathways, PA and Ca2+ , to affect rice seedling response to osmotic stress
OsPLC4	Os05g0127200	LOC_Os05g03610	stress response	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	In addition, the loss of OsPLC4 compromised the increase of inositol triphosphate (IP3 ) and free cytoplasmic Ca2+ ([Ca2+ ]cyt ) and inhibited the induction of genes involved in Ca2+ sensor and osmotic stress response to salt stress
OsPLGG1	Os01g0511600	LOC_Os01g32830	chloroplast	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	Subcellular localization of OsPLGG1-GFP fusion protein, along with its predicted N-terminal transmembrane domain, confirmed that OsPLGG1 is a chloroplast transmembrane protein
OsPLGG1	Os01g0511600	LOC_Os01g32830	growth	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	OsPLGG1 mutant lines, osplgg1-1, osplgg1-2, and osplgg1-3, showed a growth retardation phenotype, such as pale green leaf, reduced tiller number, and reduced seed grain weight as well as reduced photosynthetic carbon reduction rate due to low activities of photosystem I and II
OsPLGG1	Os01g0511600	LOC_Os01g32830	growth	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	The plant growth retardation in osplgg1 mutants was rescued under high CO2 condition
OsPLGG1	Os01g0511600	LOC_Os01g32830	growth	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	These results suggest that OsPLGG1 is the functional plastidic glycolate/glycerate transporter, which is necessary for photorespiration and growth in rice
OsPLGG1	Os01g0511600	LOC_Os01g32830	grain	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	OsPLGG1 mutant lines, osplgg1-1, osplgg1-2, and osplgg1-3, showed a growth retardation phenotype, such as pale green leaf, reduced tiller number, and reduced seed grain weight as well as reduced photosynthetic carbon reduction rate due to low activities of photosystem I and II
OsPLGG1	Os01g0511600	LOC_Os01g32830	tiller	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	OsPLGG1 mutant lines, osplgg1-1, osplgg1-2, and osplgg1-3, showed a growth retardation phenotype, such as pale green leaf, reduced tiller number, and reduced seed grain weight as well as reduced photosynthetic carbon reduction rate due to low activities of photosystem I and II
OsPLGG1	Os01g0511600	LOC_Os01g32830	seed	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	OsPLGG1 mutant lines, osplgg1-1, osplgg1-2, and osplgg1-3, showed a growth retardation phenotype, such as pale green leaf, reduced tiller number, and reduced seed grain weight as well as reduced photosynthetic carbon reduction rate due to low activities of photosystem I and II
OsPLGG1	Os01g0511600	LOC_Os01g32830	plant growth	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	The plant growth retardation in osplgg1 mutants was rescued under high CO2 condition
OsPLGG1	Os01g0511600	LOC_Os01g32830	grain weight	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	OsPLGG1 mutant lines, osplgg1-1, osplgg1-2, and osplgg1-3, showed a growth retardation phenotype, such as pale green leaf, reduced tiller number, and reduced seed grain weight as well as reduced photosynthetic carbon reduction rate due to low activities of photosystem I and II
OsPLGG1	Os01g0511600	LOC_Os01g32830	tiller number	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	OsPLGG1 mutant lines, osplgg1-1, osplgg1-2, and osplgg1-3, showed a growth retardation phenotype, such as pale green leaf, reduced tiller number, and reduced seed grain weight as well as reduced photosynthetic carbon reduction rate due to low activities of photosystem I and II
OsPLGG1	Os01g0511600	LOC_Os01g32830	photosystem	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	OsPLGG1 mutant lines, osplgg1-1, osplgg1-2, and osplgg1-3, showed a growth retardation phenotype, such as pale green leaf, reduced tiller number, and reduced seed grain weight as well as reduced photosynthetic carbon reduction rate due to low activities of photosystem I and II
OsPLIM2a	Os02g0641000	LOC_Os02g42820	tiller	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development
OsPLIM2a	Os02g0641000	LOC_Os02g42820	tiller	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development	Transgenic plants overexpressing OsPLIM2a produced bigger seeds than wild type, whereas they exhibited reduction in tiller numbers
OsPLIM2a	Os02g0641000	LOC_Os02g42820	tiller	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development	These results suggest that OsPLIM2a may participate positively in seed development but negatively in tiller differentiation
OsPLIM2a	Os02g0641000	LOC_Os02g42820	development	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development
OsPLIM2a	Os02g0641000	LOC_Os02g42820	development	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development	These results suggest that OsPLIM2a may participate positively in seed development but negatively in tiller differentiation
OsPLIM2a	Os02g0641000	LOC_Os02g42820	seed	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development
OsPLIM2a	Os02g0641000	LOC_Os02g42820	seed	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development	These results suggest that OsPLIM2a may participate positively in seed development but negatively in tiller differentiation
OsPLIM2a	Os02g0641000	LOC_Os02g42820	seed development	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development	These results suggest that OsPLIM2a may participate positively in seed development but negatively in tiller differentiation
OsPLIM2a	Os02g0641000	LOC_Os02g42820	tiller number	Rice LIM protein OsPLIM2a is involved in rice seed and tiller development	Transgenic plants overexpressing OsPLIM2a produced bigger seeds than wild type, whereas they exhibited reduction in tiller numbers
OsPLIM2b	Os04g0532500	LOC_Os04g45010	pollen	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11	OsNek3 was shown to interact with a LIM domain-containing protein, OsPLIM2b, whose expression was strongly specific in mature pollen, suggesting that OsNek3 might play a role in pollen germination
OsPLL3	Os02g0214400	LOC_Os02g12300	development	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLL3	Os02g0214400	LOC_Os02g12300	pollen	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLL3	Os02g0214400	LOC_Os02g12300	sterility	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLL3	Os02g0214400	LOC_Os02g12300	male sterility	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLL3	Os02g0214400	LOC_Os02g12300	pollen development	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLL4	Os04g0137001|Os04g0137100|Os04g0137201	LOC_Os04g05050	development	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Notably, OsPLL1, OsPLL3, OsPLL4 and OsPLL12 exhibit strong and preferential expression in panicles suggesting that the potential roles of these genes are crucial during rice panicle development
OsPLL4	Os04g0137001|Os04g0137100|Os04g0137201	LOC_Os04g05050	development	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLL4	Os04g0137001|Os04g0137100|Os04g0137201	LOC_Os04g05050	pollen	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLL4	Os04g0137001|Os04g0137100|Os04g0137201	LOC_Os04g05050	panicle	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Notably, OsPLL1, OsPLL3, OsPLL4 and OsPLL12 exhibit strong and preferential expression in panicles suggesting that the potential roles of these genes are crucial during rice panicle development
OsPLL4	Os04g0137001|Os04g0137100|Os04g0137201	LOC_Os04g05050	sterility	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLL4	Os04g0137001|Os04g0137100|Os04g0137201	LOC_Os04g05050	male sterility	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLL4	Os04g0137001|Os04g0137100|Os04g0137201	LOC_Os04g05050	pollen development	Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Moreover, knockdown of OsPLL3 and OsPLL4 by artificial microRNA (amiRNA) disrupted normal pollen development and resulted in partial male sterility
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	The OsPSL1/VHA-A1 transcript levels progressively declined with the age-dependent leaf senescence in both the ospls1 mutant and its wild type
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	The significant decrease in both OsPSL1/VHA-A1 gene expression and VHA enzyme activity in the ospls1 mutant strongly suggests a negative regulatory role for the normal OsPLS1/VHA-A1 gene in the onset of rice leaf senescence
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	To conclude, OsPLS1 is implicated in leaf senescence and seed dormancy in rice
OsPLS1	Os06g0662000	LOC_Os06g45120	seed	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.
OsPLS1	Os06g0662000	LOC_Os06g45120	seed	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	To conclude, OsPLS1 is implicated in leaf senescence and seed dormancy in rice
OsPLS1	Os06g0662000	LOC_Os06g45120	development	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	Despite normal development in early seedlings, the ospls1 mutant leaves displayed lesion-mimics and early senescence, and a high transpiration rate after tillering
OsPLS1	Os06g0662000	LOC_Os06g45120	map-based cloning	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	Using a map-based cloning approach, we determined that a cytosine deletion in the OsPLS1 gene encoding vacuolar H(+)-ATPase subunit A1 (VHA-A1) underlies the phenotypic abnormalities in the ospls1 mutant
OsPLS1	Os06g0662000	LOC_Os06g45120	salicylic acid	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	The ospls1 mutant featured higher salicylic acid (SA) levels and reactive oxygen species (ROS) accumulation, and activation of signal transduction by up-regulation of WRKY genes in leaves
OsPLS1	Os06g0662000	LOC_Os06g45120	senescence	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.
OsPLS1	Os06g0662000	LOC_Os06g45120	senescence	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	The OsPSL1/VHA-A1 transcript levels progressively declined with the age-dependent leaf senescence in both the ospls1 mutant and its wild type
OsPLS1	Os06g0662000	LOC_Os06g45120	senescence	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	The significant decrease in both OsPSL1/VHA-A1 gene expression and VHA enzyme activity in the ospls1 mutant strongly suggests a negative regulatory role for the normal OsPLS1/VHA-A1 gene in the onset of rice leaf senescence
OsPLS1	Os06g0662000	LOC_Os06g45120	senescence	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	To conclude, OsPLS1 is implicated in leaf senescence and seed dormancy in rice
OsPLS1	Os06g0662000	LOC_Os06g45120	tillering	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	Despite normal development in early seedlings, the ospls1 mutant leaves displayed lesion-mimics and early senescence, and a high transpiration rate after tillering
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf senescence	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf senescence	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	The OsPSL1/VHA-A1 transcript levels progressively declined with the age-dependent leaf senescence in both the ospls1 mutant and its wild type
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf senescence	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	The significant decrease in both OsPSL1/VHA-A1 gene expression and VHA enzyme activity in the ospls1 mutant strongly suggests a negative regulatory role for the normal OsPLS1/VHA-A1 gene in the onset of rice leaf senescence
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf senescence	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	To conclude, OsPLS1 is implicated in leaf senescence and seed dormancy in rice
OsPLS1	Os06g0662000	LOC_Os06g45120	sa	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	Consistent with this, the ospls1 mutant exhibited hypersensitivity to exogenous SA and/or H2O2
OsPLS1	Os06g0662000	LOC_Os06g45120	SA	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	Consistent with this, the ospls1 mutant exhibited hypersensitivity to exogenous SA and/or H2O2
OsPLS1	Os06g0662000	LOC_Os06g45120	reactive oxygen species	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	The ospls1 mutant featured higher salicylic acid (SA) levels and reactive oxygen species (ROS) accumulation, and activation of signal transduction by up-regulation of WRKY genes in leaves
OsPLS1	Os06g0662000	LOC_Os06g45120	dormancy	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.
OsPLS1	Os06g0662000	LOC_Os06g45120	dormancy	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	To conclude, OsPLS1 is implicated in leaf senescence and seed dormancy in rice
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Some antioxidative and carbohydrate metabolism-related genes were detected to be differentially expressed in the senescing leaves of ospls1 mutant, suggesting that these genes probably play response and regulatory roles in leaf senescence
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf senescence	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.
OsPLS1	Os06g0662000	LOC_Os06g45120	leaf senescence	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Some antioxidative and carbohydrate metabolism-related genes were detected to be differentially expressed in the senescing leaves of ospls1 mutant, suggesting that these genes probably play response and regulatory roles in leaf senescence
OsPLS1	Os06g0662000	LOC_Os06g45120	early leaf senescence	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.
OsPLS1	Os06g0662000	LOC_Os06g45120	senescence	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.
OsPLS1	Os06g0662000	LOC_Os06g45120	senescence	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Some antioxidative and carbohydrate metabolism-related genes were detected to be differentially expressed in the senescing leaves of ospls1 mutant, suggesting that these genes probably play response and regulatory roles in leaf senescence
OsPLS1	Os06g0662000	LOC_Os06g45120	photosynthesis	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Results showed that the ospls1 mutant underwent significant decreases in the maximal quantum yield of photosystem II (PSII) photochemistry (Fv/Fm), net photosynthesis rate (Pn), and soluble sugar and protein, followed by the decreases in OsVHA-A transcript and vacuolar H<U+207A>-ATPase activity
OsPLS1	Os06g0662000	LOC_Os06g45120	photosynthesis	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	RNA-seq results showed that 4827 differentially expressed genes (DEGs) were identified in ospls1 mutant between 0 day and 14 days, and the pathways of biosynthesis of secondary metabolites, carbon fixation in photosynthetic organisms, and photosynthesis were downregulated in the senescing leaves of ospls1 mutant during the grain-filling stage
OsPLS1	Os06g0662000	LOC_Os06g45120	yield	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Results showed that the ospls1 mutant underwent significant decreases in the maximal quantum yield of photosystem II (PSII) photochemistry (Fv/Fm), net photosynthesis rate (Pn), and soluble sugar and protein, followed by the decreases in OsVHA-A transcript and vacuolar H<U+207A>-ATPase activity
OsPLS1	Os06g0662000	LOC_Os06g45120	yield	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Finally, yield traits were severely suppressed in the ospls1 mutant
OsPLS1	Os06g0662000	LOC_Os06g45120	sugar	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Results showed that the ospls1 mutant underwent significant decreases in the maximal quantum yield of photosystem II (PSII) photochemistry (Fv/Fm), net photosynthesis rate (Pn), and soluble sugar and protein, followed by the decreases in OsVHA-A transcript and vacuolar H<U+207A>-ATPase activity
OsPLS1	Os06g0662000	LOC_Os06g45120	grain-filling	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.
OsPLS1	Os06g0662000	LOC_Os06g45120	grain-filling	Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage.	RNA-seq results showed that 4827 differentially expressed genes (DEGs) were identified in ospls1 mutant between 0 day and 14 days, and the pathways of biosynthesis of secondary metabolites, carbon fixation in photosynthetic organisms, and photosynthesis were downregulated in the senescing leaves of ospls1 mutant during the grain-filling stage
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	OsPLS3 regulates the onset of leaf senescence in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Through map-based cloning strategy, we determined that 22-bp deletion in the OsPLS3 gene encoding a domain of unknown function 266 (DUF266)-containing protein, a member of GT14-like, underlies the premature leaf senescence phenotype in the ospls3 mutant
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	The OsPLS3 mRNA levels progressively declined with the age-dependent leaf senescence in wild-type rice, implying a negative role of OsPLS3 in regulating leaf senescence
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Our results indicated that the DUF266-containing gene OsPLS3 plays an important role in the onset of leaf senescence, in part through cytokinin and ethylene signaling in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf senescence	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf senescence	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	OsPLS3 regulates the onset of leaf senescence in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf senescence	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Through map-based cloning strategy, we determined that 22-bp deletion in the OsPLS3 gene encoding a domain of unknown function 266 (DUF266)-containing protein, a member of GT14-like, underlies the premature leaf senescence phenotype in the ospls3 mutant
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf senescence	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	The OsPLS3 mRNA levels progressively declined with the age-dependent leaf senescence in wild-type rice, implying a negative role of OsPLS3 in regulating leaf senescence
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf senescence	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Our results indicated that the DUF266-containing gene OsPLS3 plays an important role in the onset of leaf senescence, in part through cytokinin and ethylene signaling in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	senescence	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	OsPLS3 regulates the onset of leaf senescence in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	senescence	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Through map-based cloning strategy, we determined that 22-bp deletion in the OsPLS3 gene encoding a domain of unknown function 266 (DUF266)-containing protein, a member of GT14-like, underlies the premature leaf senescence phenotype in the ospls3 mutant
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	senescence	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	The OsPLS3 mRNA levels progressively declined with the age-dependent leaf senescence in wild-type rice, implying a negative role of OsPLS3 in regulating leaf senescence
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	map-based cloning	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Key message The OsPLS3 locus was isolated by map-based cloning that encodes a DUF266-containing protein
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	map-based cloning	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Through map-based cloning strategy, we determined that 22-bp deletion in the OsPLS3 gene encoding a domain of unknown function 266 (DUF266)-containing protein, a member of GT14-like, underlies the premature leaf senescence phenotype in the ospls3 mutant
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	ethylene	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Physiological analysis, and histochemical staining and transmission electron microscopy assays indicated that the ospls3 mutant accumulated higher levels of ethylene and reactive oxygen species than its wild type
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	ethylene	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Our results indicated that the DUF266-containing gene OsPLS3 plays an important role in the onset of leaf senescence, in part through cytokinin and ethylene signaling in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	cytokinin	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Our results indicated that the DUF266-containing gene OsPLS3 plays an important role in the onset of leaf senescence, in part through cytokinin and ethylene signaling in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	reactive oxygen species	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Physiological analysis, and histochemical staining and transmission electron microscopy assays indicated that the ospls3 mutant accumulated higher levels of ethylene and reactive oxygen species than its wild type
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Compared to the wild type IR64, the spotted-leaf mutant spl21 exhibited loss of chlorophyll, breakdown of chloroplasts, down-regulation of photosynthesis-related genes, and up-regulation  of senescence associated genes, which indicated that OsGCNT regulates premature leaf senescence
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	High throughput RNA sequencing analysis provided further evidence for the biological effects of loss of OsGCNT function on cell death, premature leaf senescence and enhanced disease resistance in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Thus, we demonstrated that the novel OsGCNT regulated rice innate immunity and immunity-associated leaf senescence probably by changing the jasmonate metabolic  pathway
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf senescence	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Compared to the wild type IR64, the spotted-leaf mutant spl21 exhibited loss of chlorophyll, breakdown of chloroplasts, down-regulation of photosynthesis-related genes, and up-regulation  of senescence associated genes, which indicated that OsGCNT regulates premature leaf senescence
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf senescence	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	High throughput RNA sequencing analysis provided further evidence for the biological effects of loss of OsGCNT function on cell death, premature leaf senescence and enhanced disease resistance in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	leaf senescence	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Thus, we demonstrated that the novel OsGCNT regulated rice innate immunity and immunity-associated leaf senescence probably by changing the jasmonate metabolic  pathway
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	senescence	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Compared to the wild type IR64, the spotted-leaf mutant spl21 exhibited loss of chlorophyll, breakdown of chloroplasts, down-regulation of photosynthesis-related genes, and up-regulation  of senescence associated genes, which indicated that OsGCNT regulates premature leaf senescence
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	senescence	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	High throughput RNA sequencing analysis provided further evidence for the biological effects of loss of OsGCNT function on cell death, premature leaf senescence and enhanced disease resistance in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	senescence	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Thus, we demonstrated that the novel OsGCNT regulated rice innate immunity and immunity-associated leaf senescence probably by changing the jasmonate metabolic  pathway
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	resistance	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	resistance	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	High throughput RNA sequencing analysis provided further evidence for the biological effects of loss of OsGCNT function on cell death, premature leaf senescence and enhanced disease resistance in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	defense	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	oryzae, up-regulation of pathogenesis-related genes and increased level of jasmonate which suggested that OsGCNT is a negative  regulator of defense response in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	jasmonate	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	oryzae, up-regulation of pathogenesis-related genes and increased level of jasmonate which suggested that OsGCNT is a negative  regulator of defense response in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	jasmonate	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Thus, we demonstrated that the novel OsGCNT regulated rice innate immunity and immunity-associated leaf senescence probably by changing the jasmonate metabolic  pathway
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	defense response	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	oryzae, up-regulation of pathogenesis-related genes and increased level of jasmonate which suggested that OsGCNT is a negative  regulator of defense response in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	disease	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	disease	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	High throughput RNA sequencing analysis provided further evidence for the biological effects of loss of OsGCNT function on cell death, premature leaf senescence and enhanced disease resistance in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	disease resistance	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	disease resistance	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	High throughput RNA sequencing analysis provided further evidence for the biological effects of loss of OsGCNT function on cell death, premature leaf senescence and enhanced disease resistance in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	cell death	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	High throughput RNA sequencing analysis provided further evidence for the biological effects of loss of OsGCNT function on cell death, premature leaf senescence and enhanced disease resistance in rice
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	immunity	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Thus, we demonstrated that the novel OsGCNT regulated rice innate immunity and immunity-associated leaf senescence probably by changing the jasmonate metabolic  pathway
OsPLS3|OsGCNT	Os12g0618800	LOC_Os12g42420	innate immunity	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice	Thus, we demonstrated that the novel OsGCNT regulated rice innate immunity and immunity-associated leaf senescence probably by changing the jasmonate metabolic  pathway
OsPLS4	Os04g0376300	LOC_Os04g30760	leaf	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.
OsPLS4	Os04g0376300	LOC_Os04g30760	leaf	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	A single nucleotide substitution in OsPLS4 reduced leaf cuticular wax, and the expression levels of most wax biosynthesis-associated genes were downregulated
OsPLS4	Os04g0376300	LOC_Os04g30760	leaf	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	Together, all the above results indicate that the OsPLS4 mutation affects cuticular wax biosynthesis and chloroplast development in rice, causing reduced cuticular wax and premature leaf senescence
OsPLS4	Os04g0376300	LOC_Os04g30760	leaf senescence	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.
OsPLS4	Os04g0376300	LOC_Os04g30760	leaf senescence	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	Together, all the above results indicate that the OsPLS4 mutation affects cuticular wax biosynthesis and chloroplast development in rice, causing reduced cuticular wax and premature leaf senescence
OsPLS4	Os04g0376300	LOC_Os04g30760	chloroplast	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	Subcellular localization of OsPLS4 was observed in the chloroplast
OsPLS4	Os04g0376300	LOC_Os04g30760	chloroplast	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	Together, all the above results indicate that the OsPLS4 mutation affects cuticular wax biosynthesis and chloroplast development in rice, causing reduced cuticular wax and premature leaf senescence
OsPLS4	Os04g0376300	LOC_Os04g30760	senescence	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.
OsPLS4	Os04g0376300	LOC_Os04g30760	senescence	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	Together, all the above results indicate that the OsPLS4 mutation affects cuticular wax biosynthesis and chloroplast development in rice, causing reduced cuticular wax and premature leaf senescence
OsPLS4	Os04g0376300	LOC_Os04g30760	development	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	Together, all the above results indicate that the OsPLS4 mutation affects cuticular wax biosynthesis and chloroplast development in rice, causing reduced cuticular wax and premature leaf senescence
OsPLS4	Os04g0376300	LOC_Os04g30760	chloroplast development	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	Together, all the above results indicate that the OsPLS4 mutation affects cuticular wax biosynthesis and chloroplast development in rice, causing reduced cuticular wax and premature leaf senescence
OsPLS4	Os04g0376300	LOC_Os04g30760	cuticular wax biosynthesis	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.
OsPLS4	Os04g0376300	LOC_Os04g30760	cuticular wax biosynthesis	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	Together, all the above results indicate that the OsPLS4 mutation affects cuticular wax biosynthesis and chloroplast development in rice, causing reduced cuticular wax and premature leaf senescence
OsPLS4	Os04g0376300	LOC_Os04g30760	wax biosynthesis	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.
OsPLS4	Os04g0376300	LOC_Os04g30760	wax biosynthesis	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	A single nucleotide substitution in OsPLS4 reduced leaf cuticular wax, and the expression levels of most wax biosynthesis-associated genes were downregulated
OsPLS4	Os04g0376300	LOC_Os04g30760	wax biosynthesis	OsPLS4 Is Involved in Cuticular Wax Biosynthesis and Affects Leaf Senescence in Rice.	Together, all the above results indicate that the OsPLS4 mutation affects cuticular wax biosynthesis and chloroplast development in rice, causing reduced cuticular wax and premature leaf senescence
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	leaf	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Tissue-specific gene expression analysis revealed that OsPM19L1 was highly expressed in the leaf sheath of rice
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	panicle	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Interestingly, expression of OsPM19L1 was high at the early stage of panicle development and decreased thereafter
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	sheath	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Tissue-specific gene expression analysis revealed that OsPM19L1 was highly expressed in the leaf sheath of rice
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	development	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Interestingly, expression of OsPM19L1 was high at the early stage of panicle development and decreased thereafter
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	salt	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	qRT-PCR analysis indicated that OsPM19L1 was dramatically induced by 20% PEG stress (&gt;600-fold), exogenous abscisic acid (&gt;350-fold), salt and cold stress
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	tolerance	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Thus, OsPM19L1 appears to be closely associated with stress tolerance through ABA-dependent pathway in rice
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	cold stress	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	qRT-PCR analysis indicated that OsPM19L1 was dramatically induced by 20% PEG stress (&gt;600-fold), exogenous abscisic acid (&gt;350-fold), salt and cold stress
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	stress	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	stress	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	qRT-PCR analysis indicated that OsPM19L1 was dramatically induced by 20% PEG stress (&gt;600-fold), exogenous abscisic acid (&gt;350-fold), salt and cold stress
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	stress	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Moreover, under stress conditions, OsPM19L1 expression was enhanced in an ABI5-Like1 (ABL1) deficiency rice mutant, abl1, suggesting that ABL1 negatively regulates OsPM19L1 gene expression
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	stress	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Thus, OsPM19L1 appears to be closely associated with stress tolerance through ABA-dependent pathway in rice
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	abscisic acid	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	qRT-PCR analysis indicated that OsPM19L1 was dramatically induced by 20% PEG stress (&gt;600-fold), exogenous abscisic acid (&gt;350-fold), salt and cold stress
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	stress tolerance	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Thus, OsPM19L1 appears to be closely associated with stress tolerance through ABA-dependent pathway in rice
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	transcription factor	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	Further investigation revealed that OsPM1 expression is regulated by the AREB/ABF family transcription factor OsbZIP46
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	seed	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	Phenotypic analysis of overexpression, RNA interference (RNAi), and knock out (KO) lines showed that OsPM1 is involved in drought responses and seed germination regulation
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	drought	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	drought	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	Phenotypic analysis of overexpression, RNA interference (RNAi), and knock out (KO) lines showed that OsPM1 is involved in drought responses and seed germination regulation
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	drought	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	Our results thus revealed that OsPM1 is an ABA influx carrier that plays an important role in drought responses
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	seed germination	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	Phenotypic analysis of overexpression, RNA interference (RNAi), and knock out (KO) lines showed that OsPM1 is involved in drought responses and seed germination regulation
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	ABA	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	In this study, we found that rice (Oryza sativa) OsPM1 (PLASMA MEMBRANE PROTEIN 1), encoded by a gene of AWPM-19 like family, mediates ABA influx through the plasma membrane
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	ABA	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	3H ABA transport activity and FRET (Fluorescence Resonance Energy Transfer) assays both demonstrated that OsPM1 facilitates ABA uptake into cells
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	ABA	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	Our results thus revealed that OsPM1 is an ABA influx carrier that plays an important role in drought responses
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	ABA	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	In this study, we found that rice (Oryza sativa) OsPM1 (PLASMA MEMBRANE PROTEIN 1), encoded by a gene of AWPM-19 like family, mediates ABA influx through the plasma membrane
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	ABA	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	3H ABA transport activity and FRET (Fluorescence Resonance Energy Transfer) assays both demonstrated that OsPM1 facilitates ABA uptake into cells
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	ABA	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	Our results thus revealed that OsPM1 is an ABA influx carrier that plays an important role in drought responses
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	plasma membrane	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	In this study, we found that rice (Oryza sativa) OsPM1 (PLASMA MEMBRANE PROTEIN 1), encoded by a gene of AWPM-19 like family, mediates ABA influx through the plasma membrane
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	abscisic acid	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	drought	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	salt	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
OsPM19L1|OsPM1	Os05g0381400	LOC_Os05g31670	drought tolerance	OsNAC45 is Involved in ABA Response and Salt Tolerance in Rice	Previous reports have demonstrated that overexpression of OsNAC45 enhances salt and drought tolerance in rice, and that OsNAC45 may regulate the expression of two specific genes, OsPM1 and OsLEA3-1
OsPME1	Os03g0309400	LOC_Os03g19610	pollen	Isolation and Expression analysis of OsPME1, encoding for a putative Pectin Methyl Esterase from Oryza sativa (subsp. indica)	Expression pattern analysis revealed that OsPME1 is expressed only in pollen grains, during the later stages of their development and was also regulated by various abiotic stress treatments and phytohormones
OsPME1	Os03g0309400	LOC_Os03g19610	grain	Isolation and Expression analysis of OsPME1, encoding for a putative Pectin Methyl Esterase from Oryza sativa (subsp. indica)	Expression pattern analysis revealed that OsPME1 is expressed only in pollen grains, during the later stages of their development and was also regulated by various abiotic stress treatments and phytohormones
OsPME1	Os03g0309400	LOC_Os03g19610	phytohormone	Isolation and Expression analysis of OsPME1, encoding for a putative Pectin Methyl Esterase from Oryza sativa (subsp. indica)	Expression pattern analysis revealed that OsPME1 is expressed only in pollen grains, during the later stages of their development and was also regulated by various abiotic stress treatments and phytohormones
OsPME1	Os03g0309400	LOC_Os03g19610	abiotic stress	Isolation and Expression analysis of OsPME1, encoding for a putative Pectin Methyl Esterase from Oryza sativa (subsp. indica)	Expression pattern analysis revealed that OsPME1 is expressed only in pollen grains, during the later stages of their development and was also regulated by various abiotic stress treatments and phytohormones
OsPMEI12	Os03g0100100	LOC_Os03g01020	growth	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	 Furthermore, CRISPR/Cas9 was used to edit the OsPMEI12 (LOC_Os03G01020) and two mutant pmei12 lines were obtained to explore the functions of OsPMEI in plant growth and development, and under cadmium (Cd) stress
OsPMEI12	Os03g0100100	LOC_Os03g01020	stress	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	 Furthermore, CRISPR/Cas9 was used to edit the OsPMEI12 (LOC_Os03G01020) and two mutant pmei12 lines were obtained to explore the functions of OsPMEI in plant growth and development, and under cadmium (Cd) stress
OsPMEI12	Os03g0100100	LOC_Os03g01020	stress	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	 These results indicated that OsPMEI12 was involved in the regulation of methyl esterification during growth, affected cell wall composition and agronomic traits, and might play an important role in responses to phytohormones and stress
OsPMEI12	Os03g0100100	LOC_Os03g01020	plant growth	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	 Furthermore, CRISPR/Cas9 was used to edit the OsPMEI12 (LOC_Os03G01020) and two mutant pmei12 lines were obtained to explore the functions of OsPMEI in plant growth and development, and under cadmium (Cd) stress
OsPMEI12	Os03g0100100	LOC_Os03g01020	cell wall	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.
OsPMEI12	Os03g0100100	LOC_Os03g01020	cell wall	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	 These results indicated that OsPMEI12 was involved in the regulation of methyl esterification during growth, affected cell wall composition and agronomic traits, and might play an important role in responses to phytohormones and stress
OsPMEI12	Os03g0100100	LOC_Os03g01020	cadmium	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	 Furthermore, CRISPR/Cas9 was used to edit the OsPMEI12 (LOC_Os03G01020) and two mutant pmei12 lines were obtained to explore the functions of OsPMEI in plant growth and development, and under cadmium (Cd) stress
OsPMEI12	Os03g0100100	LOC_Os03g01020	phytohormone	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.
OsPMEI12	Os03g0100100	LOC_Os03g01020	heavy metal	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	CRISPR/Cas9 Mutant Rice Ospmei12 Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.
OsPMEI28	Os08g0108100	LOC_Os08g01670	culm	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.	Overexpression of OsPMEI28 in rice resulted in an increased level of cell wall bound methylester groups and differential changes in the composition of cell wall neutral monosaccharides and lignin content in culm tissues
OsPMEI28	Os08g0108100	LOC_Os08g01670	culm	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.	Consequently, transgenic plants overexpressing OsPMEI28 exhibited dwarf phenotypes and reduced culm diameter
OsPMEI28	Os08g0108100	LOC_Os08g01670	culm	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.	Our data indicate that OsPMEI28 functions as a critical structural modulator by regulating the degree of pectin methylesterification and that an impaired status of pectin methylesterification affects physiochemical properties of the cell wall components and causes abnormal cell extensibility in rice culm tissues
OsPMEI28	Os08g0108100	LOC_Os08g01670	cell wall	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.	Overexpression of OsPMEI28 in rice resulted in an increased level of cell wall bound methylester groups and differential changes in the composition of cell wall neutral monosaccharides and lignin content in culm tissues
OsPMEI28	Os08g0108100	LOC_Os08g01670	cell wall	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.	Our data indicate that OsPMEI28 functions as a critical structural modulator by regulating the degree of pectin methylesterification and that an impaired status of pectin methylesterification affects physiochemical properties of the cell wall components and causes abnormal cell extensibility in rice culm tissues
OsPMEI28	Os08g0108100	LOC_Os08g01670	dwarf	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.	Consequently, transgenic plants overexpressing OsPMEI28 exhibited dwarf phenotypes and reduced culm diameter
OsPMEI28	Os08g0108100	LOC_Os08g01670	lignin	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.	Overexpression of OsPMEI28 in rice resulted in an increased level of cell wall bound methylester groups and differential changes in the composition of cell wall neutral monosaccharides and lignin content in culm tissues
OsPML3	Os11g0472500	LOC_Os11g28300	root	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 OsPML3 was highly expressed in rapidly developing tissues such as young leaves, root caps, lateral root primordia, and young anthers
OsPML3	Os11g0472500	LOC_Os11g28300	root	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 At the vegetative stage, we observed necrotic root tips and lateral root primordia, and chlorotic young leaves in OsPML3 knockout lines under Mn-deficient conditions
OsPML3	Os11g0472500	LOC_Os11g28300	growth	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 Heterologous expression of OsPML3 restored the growth of Mn uptake-defective yeast strain Δsmf1 under Mn-limited conditions
OsPML3	Os11g0472500	LOC_Os11g28300	fertility	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 OsPML3 knockout lines grown in the paddy field had reduced pollen fertility
OsPML3	Os11g0472500	LOC_Os11g28300	pollen	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 OsPML3 knockout lines grown in the paddy field had reduced pollen fertility
OsPML3	Os11g0472500	LOC_Os11g28300	vegetative	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 At the vegetative stage, we observed necrotic root tips and lateral root primordia, and chlorotic young leaves in OsPML3 knockout lines under Mn-deficient conditions
OsPML3	Os11g0472500	LOC_Os11g28300	homeostasis	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.
OsPML3	Os11g0472500	LOC_Os11g28300	homeostasis	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 Collectively, our results indicate that OsPML3 maintains Mn homeostasis in the Golgi apparatus of the rapidly developing rice tissues, and regulates the deposition of cell wall polysaccharides and late-stage Golgi N-glycosylation, especially biosynthesis of the Lewis A structure
OsPML3	Os11g0472500	LOC_Os11g28300	transporter	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.
OsPML3	Os11g0472500	LOC_Os11g28300	cell wall	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 Additionally, knocking out OsPML3 reduced the deposition of cell wall polysaccharides and the content of Lea (Lewis A structure)-containing N-glycan in roots and young leaves
OsPML3	Os11g0472500	LOC_Os11g28300	cell wall	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 Collectively, our results indicate that OsPML3 maintains Mn homeostasis in the Golgi apparatus of the rapidly developing rice tissues, and regulates the deposition of cell wall polysaccharides and late-stage Golgi N-glycosylation, especially biosynthesis of the Lewis A structure
OsPML3	Os11g0472500	LOC_Os11g28300	manganese	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.
OsPML3	Os11g0472500	LOC_Os11g28300	lateral root	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 OsPML3 was highly expressed in rapidly developing tissues such as young leaves, root caps, lateral root primordia, and young anthers
OsPML3	Os11g0472500	LOC_Os11g28300	lateral root	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 At the vegetative stage, we observed necrotic root tips and lateral root primordia, and chlorotic young leaves in OsPML3 knockout lines under Mn-deficient conditions
OsPML3	Os11g0472500	LOC_Os11g28300	Pollen Fertility	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	 OsPML3 knockout lines grown in the paddy field had reduced pollen fertility
OsPMT16	Os06g0712800	LOC_Os06g49860	growth	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification	These results indicate that OsPMT16 contributes significantly to pistil development during reproductive growth
OsPMT16	Os06g0712800	LOC_Os06g49860	development	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification
OsPMT16	Os06g0712800	LOC_Os06g49860	development	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification	These results indicate that OsPMT16 contributes significantly to pistil development during reproductive growth
OsPMT16	Os06g0712800	LOC_Os06g49860	reproductive	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification	OsPMT16 expression was confirmed in the pistil, and effects of pectin methylesterification regulation on the reproductive stage were investigated by studying the phenotype of the T-DNA insertion mutant
OsPMT16	Os06g0712800	LOC_Os06g49860	reproductive	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification	These results indicate that OsPMT16 contributes significantly to pistil development during reproductive growth
OsPMT16	Os06g0712800	LOC_Os06g49860	fertility	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification	The ospmt16 mutant showed significantly reduced fertility
OsPMT16	Os06g0712800	LOC_Os06g49860	methyltransferase	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification
OsPMT16	Os06g0712800	LOC_Os06g49860	methyltransferase	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification	Herein, we report the functional characterization of the OsPMT16 gene, which encodes a putative pectin methyltransferase (PMT) in rice
OsPMT16	Os06g0712800	LOC_Os06g49860	reproductive growth	Rice Putative Methyltransferase Gene OsPMT16 Is Required for Pistil Development Involving Pectin Modification	These results indicate that OsPMT16 contributes significantly to pistil development during reproductive growth
OsPNH1	Os06g0597400	LOC_Os06g39640	leaf	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice	Around the SAM, OsPNH1 was strongly expressed in developing leaf primordia, specifically in the presumptive vascular domains, developing vascular tissues, a few cell-layers of the adaxial region, and future bundle sheath extension cells
OsPNH1	Os06g0597400	LOC_Os06g39640	leaf	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice	On the basis of these observations, we propose that OsPNH1 functions not only in SAM maintenance as previously thought, but also in leaf formation through vascular development
OsPNH1	Os06g0597400	LOC_Os06g39640	leaf	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice
OsPNH1	Os06g0597400	LOC_Os06g39640	shoot	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice
OsPNH1	Os06g0597400	LOC_Os06g39640	shoot apical meristem	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice
OsPNH1	Os06g0597400	LOC_Os06g39640	meristem	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice
OsPNH1	Os06g0597400	LOC_Os06g39640	sheath	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice	Around the SAM, OsPNH1 was strongly expressed in developing leaf primordia, specifically in the presumptive vascular domains, developing vascular tissues, a few cell-layers of the adaxial region, and future bundle sheath extension cells
OsPNH1	Os06g0597400	LOC_Os06g39640	leaf development	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice	OsPNH1regulates leaf development and maintenance of the shoot apical meristem in rice
OsPOLP1	Os08g0175300	LOC_Os08g07840	pi	Biochemical properties of a plastidial DNA polymerase of rice	Here, we propose to rename the plant PolI homologs as DNA polymerase pi (POLP), and investigate the biochemical properties of full-length OsPOLP1
OsPOLP1	Os08g0175300	LOC_Os08g07840	phosphate	Biochemical properties of a plastidial DNA polymerase of rice	In addition, OsPOLP1 efficiently catalyzed strand displacement on nicked DNA with a 5'-deoxyribose phosphate, suggesting that this enzyme might be involved in a repair pathway similar to long-patch base excision repair
OsPORA	Os04g0678700	LOC_Os04g58200	leaf	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	OsPORA was expressed at high levels in developing leaves and decreased dramatically in fully mature leaves, whereas OsPORB expression was relatively constant throughout leaf development, similar to expression patterns of AtPORA and AtPORB in Arabidopsis
OsPORA	Os04g0678700	LOC_Os04g58200	leaf	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	Our results demonstrate that OsPORB is essential for maintaining light-dependent Chl synthesis throughout leaf development, especially under HL conditions, whereas OsPORA mainly functions in the early stages of leaf development
OsPORA	Os04g0678700	LOC_Os04g58200	leaf development	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	OsPORA was expressed at high levels in developing leaves and decreased dramatically in fully mature leaves, whereas OsPORB expression was relatively constant throughout leaf development, similar to expression patterns of AtPORA and AtPORB in Arabidopsis
OsPORA	Os04g0678700	LOC_Os04g58200	leaf development	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	Our results demonstrate that OsPORB is essential for maintaining light-dependent Chl synthesis throughout leaf development, especially under HL conditions, whereas OsPORA mainly functions in the early stages of leaf development
OsPORA	Os04g0678700	LOC_Os04g58200	leaf	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	OsPORA is expressed in the dark during early leaf development; OsPORB is expressed throughout leaf development regardless of light conditions
OsPORA	Os04g0678700	LOC_Os04g58200	growth	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	The physiological function of OsPORB in response to constant light or during reproductive growth cannot be completely replaced by constitutive activity of OsPORA, although the biochemical functions of OsPORA and OsPORB are redundant
OsPORA	Os04g0678700	LOC_Os04g58200	leaf development	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	OsPORA is expressed in the dark during early leaf development; OsPORB is expressed throughout leaf development regardless of light conditions
OsPORA	Os04g0678700	LOC_Os04g58200	development	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	OsPORA is expressed in the dark during early leaf development; OsPORB is expressed throughout leaf development regardless of light conditions
OsPORA	Os04g0678700	LOC_Os04g58200	reproductive	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	The physiological function of OsPORB in response to constant light or during reproductive growth cannot be completely replaced by constitutive activity of OsPORA, although the biochemical functions of OsPORA and OsPORB are redundant
OsPORA	Os04g0678700	LOC_Os04g58200	reproductive growth	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	The physiological function of OsPORB in response to constant light or during reproductive growth cannot be completely replaced by constitutive activity of OsPORA, although the biochemical functions of OsPORA and OsPORB are redundant
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	leaf	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	Rice faded green leaf (fgl) mutants develop yellow/white leaf variegation and necrotic lesions during leaf elongation in field-grown plants
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	seedling	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	In fgl, etiolated seedlings contained smaller PLBs in etioplasts, and lower levels of total and photoactive Pchlide
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	leaf development	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	OsPORA was expressed at high levels in developing leaves and decreased dramatically in fully mature leaves, whereas OsPORB expression was relatively constant throughout leaf development, similar to expression patterns of AtPORA and AtPORB in Arabidopsis
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	leaf development	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	Our results demonstrate that OsPORB is essential for maintaining light-dependent Chl synthesis throughout leaf development, especially under HL conditions, whereas OsPORA mainly functions in the early stages of leaf development
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	leaf	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	OsPORA was expressed at high levels in developing leaves and decreased dramatically in fully mature leaves, whereas OsPORB expression was relatively constant throughout leaf development, similar to expression patterns of AtPORA and AtPORB in Arabidopsis
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	leaf	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions	Our results demonstrate that OsPORB is essential for maintaining light-dependent Chl synthesis throughout leaf development, especially under HL conditions, whereas OsPORA mainly functions in the early stages of leaf development
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	leaf	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	OsPORA is expressed in the dark during early leaf development; OsPORB is expressed throughout leaf development regardless of light conditions
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	leaf	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	The faded green leaf (fgl) is a loss-of-function osporB mutant that displays necrotic lesions and variegation in the leaves due to destabilized grana thylakoids, and has increased numbers of plastoglobules in the chloroplasts
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	growth	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	The physiological function of OsPORB in response to constant light or during reproductive growth cannot be completely replaced by constitutive activity of OsPORA, although the biochemical functions of OsPORA and OsPORB are redundant
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	leaf development	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	OsPORA is expressed in the dark during early leaf development; OsPORB is expressed throughout leaf development regardless of light conditions
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	development	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	OsPORA is expressed in the dark during early leaf development; OsPORB is expressed throughout leaf development regardless of light conditions
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	reproductive	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	The physiological function of OsPORB in response to constant light or during reproductive growth cannot be completely replaced by constitutive activity of OsPORA, although the biochemical functions of OsPORA and OsPORB are redundant
OsPORB|FGL	Os10g0496900	LOC_Os10g35370	reproductive growth	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	The physiological function of OsPORB in response to constant light or during reproductive growth cannot be completely replaced by constitutive activity of OsPORA, although the biochemical functions of OsPORA and OsPORB are redundant
OsPOX1|ddOs319	Os01g0263300	LOC_Os01g15830	cold stress	Cold-Responsive Regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	Interestingly, at the later vacuolated pollen stage, the GUS activity was highly induced by cold stress, suggesting that OsPOX1 is a flower-preferential cold-responsive gene in rice
OsPOX1|ddOs319	Os01g0263300	LOC_Os01g15830	flower	Cold-Responsive Regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	A full-length cDNA corresponding to ddOs319, previously isolated as a cold-responsive gene in the flowers by mRNA differential display (Plant Cell Rep 26:1097-1110, 2007), was obtained from the cold-treated flowers by reverse transcription and nested PCR
OsPOX1|ddOs319	Os01g0263300	LOC_Os01g15830	shoot	Cold-Responsive Regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	Transgenic rice plants expressing P OsPOX1 -GUS showed minimal GUS activity in both shoots and roots at the vegetative stage
OsPOX1|ddOs319	Os01g0263300	LOC_Os01g15830	pollen	Cold-Responsive Regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	Interestingly, at the later vacuolated pollen stage, the GUS activity was highly induced by cold stress, suggesting that OsPOX1 is a flower-preferential cold-responsive gene in rice
OsPOX1|ddOs319	Os01g0263300	LOC_Os01g15830	flower	Cold-Responsive Regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	Interestingly, at the later vacuolated pollen stage, the GUS activity was highly induced by cold stress, suggesting that OsPOX1 is a flower-preferential cold-responsive gene in rice
OsPOX1|ddOs319	Os01g0263300	LOC_Os01g15830	flower	Cold-Responsive Regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	Cold-Responsive Regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)
OsPOX1|ddOs319	Os01g0263300	LOC_Os01g15830	vegetative	Cold-Responsive Regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	Transgenic rice plants expressing P OsPOX1 -GUS showed minimal GUS activity in both shoots and roots at the vegetative stage
OsPOX1|ddOs319	Os01g0263300	LOC_Os01g15830	root	Cold-Responsive Regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	Transgenic rice plants expressing P OsPOX1 -GUS showed minimal GUS activity in both shoots and roots at the vegetative stage
OsPP18|OsPP2C10	Os02g0149800	LOC_Os02g05630	protein phosphatase	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice
OsPP18|OsPP2C10	Os02g0149800	LOC_Os02g05630	drought and oxidative stress	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice
OsPP18|OsPP2C10	Os02g0149800	LOC_Os02g05630	drought stress	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice
OsPP18|OsPP2C10	Os02g0149800	LOC_Os02g05630	oxidative stress	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice
OsPP18|OsPP2C10	Os02g0149800	LOC_Os02g05630	stress tolerance	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice
OsPP1c	Os03g0268000	LOC_Os03g16110	seed	Molecular characterization of catalytic-subunit cDNA sequences encoding protein phosphatases 1 and 2A and study of their roles in the gibberellin-dependent Osamy-cexpression in rice	Northern blot analysis showed that OsPP1c and OsPP2Ac genes are expressed in several organs of rice, including seed, shoot and root
OsPP1c	Os03g0268000	LOC_Os03g16110	root	Molecular characterization of catalytic-subunit cDNA sequences encoding protein phosphatases 1 and 2A and study of their roles in the gibberellin-dependent Osamy-cexpression in rice	Northern blot analysis showed that OsPP1c and OsPP2Ac genes are expressed in several organs of rice, including seed, shoot and root
OsPP1c	Os03g0268000	LOC_Os03g16110	shoot	Molecular characterization of catalytic-subunit cDNA sequences encoding protein phosphatases 1 and 2A and study of their roles in the gibberellin-dependent Osamy-cexpression in rice	Northern blot analysis showed that OsPP1c and OsPP2Ac genes are expressed in several organs of rice, including seed, shoot and root
OsPP2C08	Os01g0656200	LOC_Os01g46760	phosphatase	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	 We show that OsFBX257 can bind the kinases OsCDPK1 and OsSAPK2, and that its phosphorylation can be reversed by phosphatase OsPP2C08
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	transcription factor	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Microarray analysis of transgenic plants overexpressing OsNAP revealed that many stress-related genes were up-regulated, including OsPP2C06/OsABI2, OsPP2C09, OsPP2C68 and OsSalT, and some genes coding for stress-related transcription factors (OsDREB1A, OsMYB2, OsAP37 and OsAP59)
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	growth	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	OsPP2C09 positively affected plant growth but acted as a negative regulator of drought tolerance through ABA signaling
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	growth	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	The transcript and protein levels of OsPP2C09 were rapidly induced by exogenous ABA treatments, which suppressed excessive ABA signaling and plant growth arrest
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	growth	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	This study shed new light on the roles of OsPP2C09 in coordinating plant growth and drought tolerance
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	drought	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	OsPP2C09 positively affected plant growth but acted as a negative regulator of drought tolerance through ABA signaling
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	drought	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	This study shed new light on the roles of OsPP2C09 in coordinating plant growth and drought tolerance
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	tolerance	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	OsPP2C09 positively affected plant growth but acted as a negative regulator of drought tolerance through ABA signaling
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	tolerance	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	This study shed new light on the roles of OsPP2C09 in coordinating plant growth and drought tolerance
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	ABA	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	OsPP2C09 positively affected plant growth but acted as a negative regulator of drought tolerance through ABA signaling
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	ABA	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	The transcript and protein levels of OsPP2C09 were rapidly induced by exogenous ABA treatments, which suppressed excessive ABA signaling and plant growth arrest
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	drought tolerance	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	OsPP2C09 positively affected plant growth but acted as a negative regulator of drought tolerance through ABA signaling
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	drought tolerance	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	This study shed new light on the roles of OsPP2C09 in coordinating plant growth and drought tolerance
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	plant growth	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	OsPP2C09 positively affected plant growth but acted as a negative regulator of drought tolerance through ABA signaling
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	plant growth	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	The transcript and protein levels of OsPP2C09 were rapidly induced by exogenous ABA treatments, which suppressed excessive ABA signaling and plant growth arrest
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	plant growth	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	This study shed new light on the roles of OsPP2C09 in coordinating plant growth and drought tolerance
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	abscisic acid	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	The OsPP2C09 protein interacted with the core components of abscisic acid (ABA) signaling and showed PP2C phosphatase activity in vitro
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	ABA	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	OsPP2C09 positively affected plant growth but acted as a negative regulator of drought tolerance through ABA signaling
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	ABA	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	The transcript and protein levels of OsPP2C09 were rapidly induced by exogenous ABA treatments, which suppressed excessive ABA signaling and plant growth arrest
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	phosphatase	OsPP2C09, a negative regulatory factor in abscisic acid signaling, plays an essential role in balancing plant growth and drought tolerance in rice.	The OsPP2C09 protein interacted with the core components of abscisic acid (ABA) signaling and showed PP2C phosphatase activity in vitro
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	transcription factor	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways	Further analysis showed that OsPP2C09 interacts with DRE-binding (DREB) transcription factors and activates reporters containing DRE
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	growth	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways	By contrast, overexpression of the OsPYL/RCAR3-interacting protein OsPP2C09 rendered plant growth more sensitive to osmotic stress
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	drought	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways	We conclude that, through activating DRE-containing promoters, OsPP2C09 positively regulates the drought response regulon and activates an ABA-independent signaling pathway
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	abiotic stress	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	stress	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	stress	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways	By contrast, overexpression of the OsPYL/RCAR3-interacting protein OsPP2C09 rendered plant growth more sensitive to osmotic stress
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	biotic stress	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	plant growth	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways	By contrast, overexpression of the OsPYL/RCAR3-interacting protein OsPP2C09 rendered plant growth more sensitive to osmotic stress
OsPP2C09|OsPP15|OsPYL2	Os01g0846300	LOC_Os01g62760	osmotic stress	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways	By contrast, overexpression of the OsPYL/RCAR3-interacting protein OsPP2C09 rendered plant growth more sensitive to osmotic stress
OsPP2C27	Os02g0799000	LOC_Os02g55560	growth	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice	These results indicate that cold-induced OsPP2C27 negatively regulates the OsMAPK3-OsbHLH002-OsTPP1 signalling pathway by directly dephosphorylating both phospho-OsMAPK3 and phospho-OsbHLH002, preventing the sustained activation of a positive pathway for cold stress and maintaining normal growth under chilling conditions
OsPP2C27	Os02g0799000	LOC_Os02g55560	tolerance	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice
OsPP2C27	Os02g0799000	LOC_Os02g55560	cold tolerance	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice
OsPP2C27	Os02g0799000	LOC_Os02g55560	cold stress	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice	These results indicate that cold-induced OsPP2C27 negatively regulates the OsMAPK3-OsbHLH002-OsTPP1 signalling pathway by directly dephosphorylating both phospho-OsMAPK3 and phospho-OsbHLH002, preventing the sustained activation of a positive pathway for cold stress and maintaining normal growth under chilling conditions
OsPP2C27	Os02g0799000	LOC_Os02g55560	stress	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice	These results indicate that cold-induced OsPP2C27 negatively regulates the OsMAPK3-OsbHLH002-OsTPP1 signalling pathway by directly dephosphorylating both phospho-OsMAPK3 and phospho-OsbHLH002, preventing the sustained activation of a positive pathway for cold stress and maintaining normal growth under chilling conditions
OsPP2C27	Os02g0799000	LOC_Os02g55560	chilling	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice	These results indicate that cold-induced OsPP2C27 negatively regulates the OsMAPK3-OsbHLH002-OsTPP1 signalling pathway by directly dephosphorylating both phospho-OsMAPK3 and phospho-OsbHLH002, preventing the sustained activation of a positive pathway for cold stress and maintaining normal growth under chilling conditions
OsPP2C27	Os02g0799000	LOC_Os02g55560	phosphatase	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice
OsPP2C27	Os02g0799000	LOC_Os02g55560	cold	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice
OsPP2C27	Os02g0799000	LOC_Os02g55560	cold	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice	These results indicate that cold-induced OsPP2C27 negatively regulates the OsMAPK3-OsbHLH002-OsTPP1 signalling pathway by directly dephosphorylating both phospho-OsMAPK3 and phospho-OsbHLH002, preventing the sustained activation of a positive pathway for cold stress and maintaining normal growth under chilling conditions
OsPP2C49	Os05g0457200	LOC_Os05g38290	ABA	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Among these targets, we found that OsbZIP23 could positively regulate OsPP2C49, and overexpression of OsPP2C49 in rice resulted in significantly decreased sensitivity of the ABA response and rapid dehydration
OsPP2C49	Os05g0457200	LOC_Os05g38290	ABA	Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought resistance related genes.	Among these targets, we found that OsbZIP23 could positively regulate OsPP2C49, and overexpression of OsPP2C49 in rice resulted in significantly decreased sensitivity of the ABA response and rapid dehydration
OsPP2C51	Os05g0572700	LOC_Os05g49730	seed	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.
OsPP2C51	Os05g0572700	LOC_Os05g49730	seed	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	GUS histochemical assay confirmed that OsPP2C51 is expressed in the seed embryo and that this expression pattern is unique compared with those of other OsPP2CA genes
OsPP2C51	Os05g0572700	LOC_Os05g49730	seed	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	Data obtained from germination assays and alpha-amylase assays of OsPP2C51 knockout and overexpression lines suggest that OsPP2C51 positively regulates seed germination in rice
OsPP2C51	Os05g0572700	LOC_Os05g49730	seed	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	The expression of alpha-amylase synthesizing genes was high in OsPP2C51 overexpressing plants, suggesting that elevated levels of OsPP2C51 might enhance gene expression related to higher rates of seed germination
OsPP2C51	Os05g0572700	LOC_Os05g49730	seed	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	Overall, our result suggests that OsPP2C51 is a positive regulator of seed germination by directly suppressing active phosphorylated OsbZIP10
OsPP2C51	Os05g0572700	LOC_Os05g49730	seed germination	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.
OsPP2C51	Os05g0572700	LOC_Os05g49730	seed germination	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	Data obtained from germination assays and alpha-amylase assays of OsPP2C51 knockout and overexpression lines suggest that OsPP2C51 positively regulates seed germination in rice
OsPP2C51	Os05g0572700	LOC_Os05g49730	seed germination	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	The expression of alpha-amylase synthesizing genes was high in OsPP2C51 overexpressing plants, suggesting that elevated levels of OsPP2C51 might enhance gene expression related to higher rates of seed germination
OsPP2C51	Os05g0572700	LOC_Os05g49730	seed germination	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	Overall, our result suggests that OsPP2C51 is a positive regulator of seed germination by directly suppressing active phosphorylated OsbZIP10
OsPP2C51	Os05g0572700	LOC_Os05g49730	ABA	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	Analysis of protein interactions between ABA signaling components showed that OsPP2C51 interacts with OsPYL/RCAR5 in an ABA-dependent manner
OsPP2C51	Os05g0572700	LOC_Os05g49730	ABA	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	Analysis of protein interactions between ABA signaling components showed that OsPP2C51 interacts with OsPYL/RCAR5 in an ABA-dependent manner
OsPP2C51	Os05g0572700	LOC_Os05g49730	protein phosphatase	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	OsPP2C50 and OsPP2C53 is major negative regulators of ABA signaling regarding stomata closing in rice
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	stomatal	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	We identified that only OsPP2C50 and OsPP2C53 among 9 OsPP2CAs might be related with stomatal closure/opening signaling based on guard cell specific expression and subcellular localization
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	OsPP2C50 and OsPP2C53 is major negative regulators of ABA signaling regarding stomata closing in rice
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	stomata	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	OsPP2C50 and OsPP2C53 is major negative regulators of ABA signaling regarding stomata closing in rice
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	water loss	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	Transgenic rice overexpressing OsPP2C50 and OsPP2C53 showed significantly higher water loss than control
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	root	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Overexpression of OsABIL2 not only led to the ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomata density and root architecture, which likely caused the hypersensitivity to drought stress
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	root	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Taken together, this study provides significant insights into rice ABA signaling and indicates the important role of OsABIL2 in regulating root development
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	development	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Taken together, this study provides significant insights into rice ABA signaling and indicates the important role of OsABIL2 in regulating root development
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	drought	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Overexpression of OsABIL2 not only led to the ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomata density and root architecture, which likely caused the hypersensitivity to drought stress
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Overexpression of OsABIL2 not only led to the ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomata density and root architecture, which likely caused the hypersensitivity to drought stress
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Furthermore, OsABIL2 interacts with and co-localized with OsPYL1 mainly in the cytosol, and ABA treatment regulates the nucleus-cytosol distribution of OsABIL2, suggesting a different mechanism for the activation of ABA signaling
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Taken together, this study provides significant insights into rice ABA signaling and indicates the important role of OsABIL2 in regulating root development
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	root development	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Taken together, this study provides significant insights into rice ABA signaling and indicates the important role of OsABIL2 in regulating root development
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	stress	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Overexpression of OsABIL2 not only led to the ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomata density and root architecture, which likely caused the hypersensitivity to drought stress
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	stomata	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Overexpression of OsABIL2 not only led to the ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomata density and root architecture, which likely caused the hypersensitivity to drought stress
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Overexpression of OsABIL2 not only led to the ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomata density and root architecture, which likely caused the hypersensitivity to drought stress
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Furthermore, OsABIL2 interacts with and co-localized with OsPYL1 mainly in the cytosol, and ABA treatment regulates the nucleus-cytosol distribution of OsABIL2, suggesting a different mechanism for the activation of ABA signaling
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Taken together, this study provides significant insights into rice ABA signaling and indicates the important role of OsABIL2 in regulating root development
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	drought stress	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Overexpression of OsABIL2 not only led to the ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomata density and root architecture, which likely caused the hypersensitivity to drought stress
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	nucleus	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	However, unlike many other solely nucleus-localized clade A PP2Cs, the OsABIL2 is localized in both nucleus and cytosol
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	root architecture	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Overexpression of OsABIL2 not only led to the ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomata density and root architecture, which likely caused the hypersensitivity to drought stress
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	plant development	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Overexpression of OsABIL2 not only led to the ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomata density and root architecture, which likely caused the hypersensitivity to drought stress
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	root	Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote Root Hair Elongation.	Transgenic rice overexpressing SAPK10 (Stress/ABA-activated protein kinase 10) had longer root hairs; rice plants overexpressing OsABIL2 (OsABI-Like 2) had attenuated ABA signaling and shorter root hairs, suggesting that the effect of ABA on root hair elongation depends on the conserved PYR/PP2C/SnRK2 ABA signaling module
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote Root Hair Elongation.	Transgenic rice overexpressing SAPK10 (Stress/ABA-activated protein kinase 10) had longer root hairs; rice plants overexpressing OsABIL2 (OsABI-Like 2) had attenuated ABA signaling and shorter root hairs, suggesting that the effect of ABA on root hair elongation depends on the conserved PYR/PP2C/SnRK2 ABA signaling module
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	Kinase	Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote Root Hair Elongation.	Transgenic rice overexpressing SAPK10 (Stress/ABA-activated protein kinase 10) had longer root hairs; rice plants overexpressing OsABIL2 (OsABI-Like 2) had attenuated ABA signaling and shorter root hairs, suggesting that the effect of ABA on root hair elongation depends on the conserved PYR/PP2C/SnRK2 ABA signaling module
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote Root Hair Elongation.	Transgenic rice overexpressing SAPK10 (Stress/ABA-activated protein kinase 10) had longer root hairs; rice plants overexpressing OsABIL2 (OsABI-Like 2) had attenuated ABA signaling and shorter root hairs, suggesting that the effect of ABA on root hair elongation depends on the conserved PYR/PP2C/SnRK2 ABA signaling module
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	root hair	Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote Root Hair Elongation.	Transgenic rice overexpressing SAPK10 (Stress/ABA-activated protein kinase 10) had longer root hairs; rice plants overexpressing OsABIL2 (OsABI-Like 2) had attenuated ABA signaling and shorter root hairs, suggesting that the effect of ABA on root hair elongation depends on the conserved PYR/PP2C/SnRK2 ABA signaling module
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	protein kinase	Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote Root Hair Elongation.	Transgenic rice overexpressing SAPK10 (Stress/ABA-activated protein kinase 10) had longer root hairs; rice plants overexpressing OsABIL2 (OsABI-Like 2) had attenuated ABA signaling and shorter root hairs, suggesting that the effect of ABA on root hair elongation depends on the conserved PYR/PP2C/SnRK2 ABA signaling module
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Ectopic expression of mutated type 2C protein phosphatase OsABI-LIKE2 decreases abscisic acid sensitivity in Arabidopsis and rice.	A yeast two-hybrid assay revealed that the interaction between OsABIL2 and a putative rice ABA receptor, OsPYL1, was ABA-dependent, and the interaction was lost with amino acid substitution from glycine to aspartic acid at the 183rd amino acid of the OsABIL2 protein, corresponding to abi1-1 mutation
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Ectopic expression of mutated type 2C protein phosphatase OsABI-LIKE2 decreases abscisic acid sensitivity in Arabidopsis and rice.	The constitutive expression of OsABIL2 or OsABIL2G183D in Arabidopsis or rice decreased ABA sensitivity to differing degrees
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Ectopic expression of mutated type 2C protein phosphatase OsABI-LIKE2 decreases abscisic acid sensitivity in Arabidopsis and rice.	These results indicated that the introduction of abi1-1 type dominant mutation was also effective in OsABIL2 at decreasing ABA sensitivity in plants, and the attenuation of ABA sensitivity could be an alternative parameter to improve rice performance under low temperatures
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Ectopic expression of mutated type 2C protein phosphatase OsABI-LIKE2 decreases abscisic acid sensitivity in Arabidopsis and rice.	A yeast two-hybrid assay revealed that the interaction between OsABIL2 and a putative rice ABA receptor, OsPYL1, was ABA-dependent, and the interaction was lost with amino acid substitution from glycine to aspartic acid at the 183rd amino acid of the OsABIL2 protein, corresponding to abi1-1 mutation
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Ectopic expression of mutated type 2C protein phosphatase OsABI-LIKE2 decreases abscisic acid sensitivity in Arabidopsis and rice.	The constitutive expression of OsABIL2 or OsABIL2G183D in Arabidopsis or rice decreased ABA sensitivity to differing degrees
OsPP2C53|OsABIL2	Os05g0592800	LOC_Os05g51510	ABA	Ectopic expression of mutated type 2C protein phosphatase OsABI-LIKE2 decreases abscisic acid sensitivity in Arabidopsis and rice.	These results indicated that the introduction of abi1-1 type dominant mutation was also effective in OsABIL2 at decreasing ABA sensitivity in plants, and the attenuation of ABA sensitivity could be an alternative parameter to improve rice performance under low temperatures
OsPP65	Os04g0449400	LOC_Os04g37660	seedlings	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 OsPP65 was highly expressed in rice seedlings and leaves and localized in the nucleus and cytoplasm
OsPP65	Os04g0449400	LOC_Os04g37660	ja	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Significantly higher induction of genes involved in jasmonic acid (JA) and abscisic acid (ABA) biosynthesis or signaling, as well as higher contents of endogenous JA and ABA, were observed in the OsPP65 knockout plants compared with the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	ja	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Further analysis indicated that JA and ABA function independently in osmotic stress tolerance conferred by loss of OsPP65
OsPP65	Os04g0449400	LOC_Os04g37660	ja	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP65	Os04g0449400	LOC_Os04g37660	JA	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Significantly higher induction of genes involved in jasmonic acid (JA) and abscisic acid (ABA) biosynthesis or signaling, as well as higher contents of endogenous JA and ABA, were observed in the OsPP65 knockout plants compared with the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	JA	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Further analysis indicated that JA and ABA function independently in osmotic stress tolerance conferred by loss of OsPP65
OsPP65	Os04g0449400	LOC_Os04g37660	JA	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP65	Os04g0449400	LOC_Os04g37660	salt	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.
OsPP65	Os04g0449400	LOC_Os04g37660	salt	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 In this study, the functions of OsPP65 in rice osmotic and salt stress tolerance were investigated
OsPP65	Os04g0449400	LOC_Os04g37660	salt	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Here, we report that OsPP65 is responsive to multiple stresses and is remarkably induced by osmotic and salt stress treatments
OsPP65	Os04g0449400	LOC_Os04g37660	salt	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 OsPP65 knockout rice plants showed enhanced tolerance to osmotic and salt stresses
OsPP65	Os04g0449400	LOC_Os04g37660	salt	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP65	Os04g0449400	LOC_Os04g37660	tolerance	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 In this study, the functions of OsPP65 in rice osmotic and salt stress tolerance were investigated
OsPP65	Os04g0449400	LOC_Os04g37660	tolerance	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 OsPP65 knockout rice plants showed enhanced tolerance to osmotic and salt stresses
OsPP65	Os04g0449400	LOC_Os04g37660	tolerance	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Further analysis indicated that JA and ABA function independently in osmotic stress tolerance conferred by loss of OsPP65
OsPP65	Os04g0449400	LOC_Os04g37660	tolerance	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP65	Os04g0449400	LOC_Os04g37660	tolerance	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 OsPP65 is a promising target for improvement of rice stress tolerance using gene editing
OsPP65	Os04g0449400	LOC_Os04g37660	ABA	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Further analysis indicated that JA and ABA function independently in osmotic stress tolerance conferred by loss of OsPP65
OsPP65	Os04g0449400	LOC_Os04g37660	ABA	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP65	Os04g0449400	LOC_Os04g37660	salt stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.
OsPP65	Os04g0449400	LOC_Os04g37660	salt stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 In this study, the functions of OsPP65 in rice osmotic and salt stress tolerance were investigated
OsPP65	Os04g0449400	LOC_Os04g37660	salt stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Here, we report that OsPP65 is responsive to multiple stresses and is remarkably induced by osmotic and salt stress treatments
OsPP65	Os04g0449400	LOC_Os04g37660	salt stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 OsPP65 knockout rice plants showed enhanced tolerance to osmotic and salt stresses
OsPP65	Os04g0449400	LOC_Os04g37660	salt stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP65	Os04g0449400	LOC_Os04g37660	stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.
OsPP65	Os04g0449400	LOC_Os04g37660	stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 In this study, the functions of OsPP65 in rice osmotic and salt stress tolerance were investigated
OsPP65	Os04g0449400	LOC_Os04g37660	stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Here, we report that OsPP65 is responsive to multiple stresses and is remarkably induced by osmotic and salt stress treatments
OsPP65	Os04g0449400	LOC_Os04g37660	stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Significantly higher induction of genes involved in jasmonic acid (JA) and abscisic acid (ABA) biosynthesis or signaling, as well as higher contents of endogenous JA and ABA, were observed in the OsPP65 knockout plants compared with the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Further analysis indicated that JA and ABA function independently in osmotic stress tolerance conferred by loss of OsPP65
OsPP65	Os04g0449400	LOC_Os04g37660	stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Moreover, metabolomics analysis revealed higher endogenous levels of galactose and galactinol but a lower content of raffinose in the OsPP65 knockout plants than in the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP65	Os04g0449400	LOC_Os04g37660	stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 OsPP65 is a promising target for improvement of rice stress tolerance using gene editing
OsPP65	Os04g0449400	LOC_Os04g37660	stress tolerance	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 In this study, the functions of OsPP65 in rice osmotic and salt stress tolerance were investigated
OsPP65	Os04g0449400	LOC_Os04g37660	stress tolerance	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Further analysis indicated that JA and ABA function independently in osmotic stress tolerance conferred by loss of OsPP65
OsPP65	Os04g0449400	LOC_Os04g37660	stress tolerance	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP65	Os04g0449400	LOC_Os04g37660	stress tolerance	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 OsPP65 is a promising target for improvement of rice stress tolerance using gene editing
OsPP65	Os04g0449400	LOC_Os04g37660	cytoplasm	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 OsPP65 was highly expressed in rice seedlings and leaves and localized in the nucleus and cytoplasm
OsPP65	Os04g0449400	LOC_Os04g37660	nucleus	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 OsPP65 was highly expressed in rice seedlings and leaves and localized in the nucleus and cytoplasm
OsPP65	Os04g0449400	LOC_Os04g37660	abscisic acid	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Significantly higher induction of genes involved in jasmonic acid (JA) and abscisic acid (ABA) biosynthesis or signaling, as well as higher contents of endogenous JA and ABA, were observed in the OsPP65 knockout plants compared with the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	jasmonic	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Significantly higher induction of genes involved in jasmonic acid (JA) and abscisic acid (ABA) biosynthesis or signaling, as well as higher contents of endogenous JA and ABA, were observed in the OsPP65 knockout plants compared with the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	jasmonic acid	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Significantly higher induction of genes involved in jasmonic acid (JA) and abscisic acid (ABA) biosynthesis or signaling, as well as higher contents of endogenous JA and ABA, were observed in the OsPP65 knockout plants compared with the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	phytohormone	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.
OsPP65	Os04g0449400	LOC_Os04g37660	 ABA 	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Further analysis indicated that JA and ABA function independently in osmotic stress tolerance conferred by loss of OsPP65
OsPP65	Os04g0449400	LOC_Os04g37660	 ABA 	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP65	Os04g0449400	LOC_Os04g37660	stress response	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.
OsPP65	Os04g0449400	LOC_Os04g37660	osmotic stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Significantly higher induction of genes involved in jasmonic acid (JA) and abscisic acid (ABA) biosynthesis or signaling, as well as higher contents of endogenous JA and ABA, were observed in the OsPP65 knockout plants compared with the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	osmotic stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Further analysis indicated that JA and ABA function independently in osmotic stress tolerance conferred by loss of OsPP65
OsPP65	Os04g0449400	LOC_Os04g37660	osmotic stress	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Moreover, metabolomics analysis revealed higher endogenous levels of galactose and galactinol but a lower content of raffinose in the OsPP65 knockout plants than in the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	 ja 	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Significantly higher induction of genes involved in jasmonic acid (JA) and abscisic acid (ABA) biosynthesis or signaling, as well as higher contents of endogenous JA and ABA, were observed in the OsPP65 knockout plants compared with the wild-type plants after osmotic stress treatment
OsPP65	Os04g0449400	LOC_Os04g37660	 ja 	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 Further analysis indicated that JA and ABA function independently in osmotic stress tolerance conferred by loss of OsPP65
OsPP65	Os04g0449400	LOC_Os04g37660	 ja 	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	 These results together suggest that OsPP65 negatively regulates osmotic and salt stress tolerance through regulation of the JA and ABA signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway in rice
OsPP95	Os07g0507000	LOC_Os07g32380	shoot	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	Under Pi-sufficient conditions, Pi levels were lower in young leaves and higher in old leaves in ospp95 mutants than in those of the wild type, even though the overall shoot Pi levels were the same in the mutant and the wild type
OsPP95	Os07g0507000	LOC_Os07g32380	Pi	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	Rice plants overexpressing OsPP95 reduced OsPT8 phosphorylation and promoted OsPT2 and OsPT8 trafficking from the ER to the PM, resulting in Pi accumulation
OsPP95	Os07g0507000	LOC_Os07g32380	Pi	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	Under Pi-sufficient conditions, Pi levels were lower in young leaves and higher in old leaves in ospp95 mutants than in those of the wild type, even though the overall shoot Pi levels were the same in the mutant and the wild type
OsPP95	Os07g0507000	LOC_Os07g32380	Pi	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	In the wild type, OsPP95 accumulated under Pi starvation but was rapidly degraded under Pi-sufficient conditions
OsPP95	Os07g0507000	LOC_Os07g32380	phosphatase	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	We demonstrate that the protein phosphatase type 2C (PP2C) protein phosphatase OsPP95 interacts with OsPT2 and OsPT8 and dephosphorylates OsPT8 at Ser-517
OsPP95	Os07g0507000	LOC_Os07g32380	pi	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	Rice plants overexpressing OsPP95 reduced OsPT8 phosphorylation and promoted OsPT2 and OsPT8 trafficking from the ER to the PM, resulting in Pi accumulation
OsPP95	Os07g0507000	LOC_Os07g32380	pi	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	Under Pi-sufficient conditions, Pi levels were lower in young leaves and higher in old leaves in ospp95 mutants than in those of the wild type, even though the overall shoot Pi levels were the same in the mutant and the wild type
OsPP95	Os07g0507000	LOC_Os07g32380	pi	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	In the wild type, OsPP95 accumulated under Pi starvation but was rapidly degraded under Pi-sufficient conditions
OsPP95	Os07g0507000	LOC_Os07g32380	protein phosphatase	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice[OPEN]	We demonstrate that the protein phosphatase type 2C (PP2C) protein phosphatase OsPP95 interacts with OsPT2 and OsPT8 and dephosphorylates OsPT8 at Ser-517
OsPPa6	Os02g0768600	LOC_Os02g52940	growth	Mutagenesis Reveals That the OsPPa6 Gene Is Required for Enhancing the Alkaline Tolerance in Rice.	qPCR reveals that the OsPPa6 gene was significantly induced by AS, and the mutagenesis of the OsPPa6 gene apparently delayed rice's growth and development, especially under AS
OsPPa6	Os02g0768600	LOC_Os02g52940	starch	Mutagenesis Reveals That the OsPPa6 Gene Is Required for Enhancing the Alkaline Tolerance in Rice.	Measurements demonstrate that the contents of pyrophosphate in the mutants were higher than those in the wild type under AS, however, the accumulation of inorganic phosphate, ATP, chlorophyll, sucrose, and starch in the mutants were decreased significantly, and the mutagenesis of the OsPPa6 gene remarkably lowered the net photosynthetic rate of rice mutants, thus reducing the contents of soluble sugar and proline, but remarkably increasing MDA, osmotic potentials and Na+/K+ ratio in the mutants under AS
OsPPa6	Os02g0768600	LOC_Os02g52940	alkaline tolerance	Mutagenesis Reveals That the OsPPa6 Gene Is Required for Enhancing the Alkaline Tolerance in Rice.	Mutagenesis Reveals That the OsPPa6 Gene Is Required for Enhancing the Alkaline Tolerance in Rice.
OsPPa6	Os02g0768600	LOC_Os02g52940	tolerance	Mutagenesis Reveals That the OsPPa6 Gene Is Required for Enhancing the Alkaline Tolerance in Rice.	Mutagenesis Reveals That the OsPPa6 Gene Is Required for Enhancing the Alkaline Tolerance in Rice.
OsPPa6	Os02g0768600	LOC_Os02g52940	breeding	Mutagenesis Reveals That the OsPPa6 Gene Is Required for Enhancing the Alkaline Tolerance in Rice.	This study suggests that the OsPPa6 gene is an important osmotic regulatory factor in rice, and the gene-editing of CRISPR/Cas9-guided is an effective method evaluating the responsive regulation of the stress-induced gene, and simultaneously provides a scientific support for the application of the gene encoding a soluble inorganic pyrophosphatase in molecular breeding
OsPPa6	Os02g0768600	LOC_Os02g52940	sugar	Mutagenesis Reveals That the OsPPa6 Gene Is Required for Enhancing the Alkaline Tolerance in Rice.	Measurements demonstrate that the contents of pyrophosphate in the mutants were higher than those in the wild type under AS, however, the accumulation of inorganic phosphate, ATP, chlorophyll, sucrose, and starch in the mutants were decreased significantly, and the mutagenesis of the OsPPa6 gene remarkably lowered the net photosynthetic rate of rice mutants, thus reducing the contents of soluble sugar and proline, but remarkably increasing MDA, osmotic potentials and Na+/K+ ratio in the mutants under AS
Osppc4	Os01g0208700	LOC_Os01g11054	chloroplast	Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation	) has a plant-type PEPC, Osppc4, that is targeted to the chloroplast
Osppc4	Os01g0208700	LOC_Os01g11054	nitrate	Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation	Knockdown of Osppc4 expression by the RNAi technique resulted in stunting at the vegetative stage, which was much more marked when rice plants were grown with ammonium than with nitrate as the nitrogen source
Osppc4	Os01g0208700	LOC_Os01g11054	vegetative	Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation	Knockdown of Osppc4 expression by the RNAi technique resulted in stunting at the vegetative stage, which was much more marked when rice plants were grown with ammonium than with nitrate as the nitrogen source
Osppc4	Os01g0208700	LOC_Os01g11054	leaf	Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation	Its expression in the leaves was confined to mesophyll cells, and Osppc4 accounted for approximately one-third of total PEPC protein in the leaf blade
Osppc4	Os01g0208700	LOC_Os01g11054	nitrogen	Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation	Knockdown of Osppc4 expression by the RNAi technique resulted in stunting at the vegetative stage, which was much more marked when rice plants were grown with ammonium than with nitrate as the nitrogen source
OspPGM	Os10g0189100	LOC_Os10g11140	male sterility	Plastidic phosphoglucomutase and ADP-glucose pyrophosphorylase mutants impair starch synthesis in rice pollen grains and cause male sterility.	Progeny analysis of self-pollinated heterozygous lines carrying the OspPGM mutant alleles, osppgm-1 and osppgm-2, or the OsAGPL4 mutant allele, osagpl4-1, as well as reciprocal crosses between the wild type (WT) and heterozygotes revealed that loss of OspPGM or OsAGPL4 caused male sterility, with the former condition rescued by the introduction of the WT OspPGM gene
OsPPKL2	Os05g0144400	LOC_Os05g05240	grain	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Transgenic studies showed that OsPPKL1 and OsPPKL3 function as negative regulators of grain length, whereas OsPPKL2 as a positive regulator
OsPPKL2	Os05g0144400	LOC_Os05g05240	grain length	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Transgenic studies showed that OsPPKL1 and OsPPKL3 function as negative regulators of grain length, whereas OsPPKL2 as a positive regulator
OsPPKL3	Os12g0617900	LOC_Os12g42310	grain	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Transgenic studies showed that OsPPKL1 and OsPPKL3 function as negative regulators of grain length, whereas OsPPKL2 as a positive regulator
OsPPKL3	Os12g0617900	LOC_Os12g42310	grain length	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice	Transgenic studies showed that OsPPKL1 and OsPPKL3 function as negative regulators of grain length, whereas OsPPKL2 as a positive regulator
OsPPO1	Os01g0286600	LOC_Os01g18320	resistance	Mutation of Protoporphyrinogen IX Oxidase Gene Causes Spotted and Rolled Leaf and Its Overexpression Generates Herbicide Resistance in Rice.	 These finding indicate that the OsPPO1 gene has the potential to engineer herbicide resistance in rice
OsPPO1	Os01g0286600	LOC_Os01g18320	herbicide resistance	Mutation of Protoporphyrinogen IX Oxidase Gene Causes Spotted and Rolled Leaf and Its Overexpression Generates Herbicide Resistance in Rice.	 These finding indicate that the OsPPO1 gene has the potential to engineer herbicide resistance in rice
OsPPR1	Os09g0413300	LOC_Os09g24680	chloroplast	OsPPR1, a pentatricopeptide repeat protein of rice is essential for the chloroplast biogenesis	The OsPPR1 gene was found to contain a putative chloroplast transit peptide in the N-terminal region, suggesting that the gene product targets to the chloroplast
OsPPR1	Os09g0413300	LOC_Os09g24680	chloroplast	OsPPR1, a pentatricopeptide repeat protein of rice is essential for the chloroplast biogenesis	Taken together, the results suggest that the OsPPR1 is a nuclear gene of rice, encoding the PPR protein that might play a role in the chloroplast biogenesis
OsPPR1	Os09g0413300	LOC_Os09g24680	chloroplast	OsPPR1, a pentatricopeptide repeat protein of rice is essential for the chloroplast biogenesis	OsPPR1, a pentatricopeptide repeat protein of rice is essential for the chloroplast biogenesis
OsPPR1	Os09g0413300	LOC_Os09g24680	leaf	OsPPR1, a pentatricopeptide repeat protein of rice is essential for the chloroplast biogenesis	Expression analysis and immunoblot analysis suggested that the OsPPR1 was accumulated mainly in rice leaf
OsPPR11	Os06g0199100	LOC_Os06g09880	seedlings	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	 The osppr11 mutants had yellowing leaves and a lethal phenotype that inhibited chloroplast development and photosynthesis-related gene expression and reduced photosynthesis-related protein accumulation in seedlings
OsPPR11	Os06g0199100	LOC_Os06g09880	chloroplast	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.
OsPPR11	Os06g0199100	LOC_Os06g09880	chloroplast	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	OsPPR11 belongs to the P-type PPR protein family and can interact with OsCAF2 to regulate Group II intron splicing and affect chloroplast development in rice
OsPPR11	Os06g0199100	LOC_Os06g09880	chloroplast	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	 The osppr11 mutants had yellowing leaves and a lethal phenotype that inhibited chloroplast development and photosynthesis-related gene expression and reduced photosynthesis-related protein accumulation in seedlings
OsPPR11	Os06g0199100	LOC_Os06g09880	chloroplast	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	 These results indicate that OsPPR11 is essential for chloroplast development and function by affecting group II intron splicing in rice
OsPPR11	Os06g0199100	LOC_Os06g09880	development	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	OsPPR11 belongs to the P-type PPR protein family and can interact with OsCAF2 to regulate Group II intron splicing and affect chloroplast development in rice
OsPPR11	Os06g0199100	LOC_Os06g09880	development	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	 The osppr11 mutants had yellowing leaves and a lethal phenotype that inhibited chloroplast development and photosynthesis-related gene expression and reduced photosynthesis-related protein accumulation in seedlings
OsPPR11	Os06g0199100	LOC_Os06g09880	development	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	 These results indicate that OsPPR11 is essential for chloroplast development and function by affecting group II intron splicing in rice
OsPPR11	Os06g0199100	LOC_Os06g09880	R protein	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.
OsPPR11	Os06g0199100	LOC_Os06g09880	R protein	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	OsPPR11 belongs to the P-type PPR protein family and can interact with OsCAF2 to regulate Group II intron splicing and affect chloroplast development in rice
OsPPR11	Os06g0199100	LOC_Os06g09880	R protein	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	 In this study, we identified a nuclear gene encoding the P-type PPR protein OsPPR11 in chloroplasts
OsPPR11	Os06g0199100	LOC_Os06g09880	chloroplast development	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.
OsPPR11	Os06g0199100	LOC_Os06g09880	chloroplast development	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	OsPPR11 belongs to the P-type PPR protein family and can interact with OsCAF2 to regulate Group II intron splicing and affect chloroplast development in rice
OsPPR11	Os06g0199100	LOC_Os06g09880	chloroplast development	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	 The osppr11 mutants had yellowing leaves and a lethal phenotype that inhibited chloroplast development and photosynthesis-related gene expression and reduced photosynthesis-related protein accumulation in seedlings
OsPPR11	Os06g0199100	LOC_Os06g09880	chloroplast development	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	 These results indicate that OsPPR11 is essential for chloroplast development and function by affecting group II intron splicing in rice
OsPPR16	Os06g0112000	LOC_Os06g02200	leaf	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.
OsPPR16	Os06g0112000	LOC_Os06g02200	chloroplast	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.
OsPPR16	Os06g0112000	LOC_Os06g02200	chloroplast	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	We found that OsPPR16 is responsible for a single editing event at position 545 in the chloroplast rpoB mRNA, resulting in an amino acid change from serine to leucine in the subunit of the plastid-encoded RNA polymerase
OsPPR16	Os06g0112000	LOC_Os06g02200	chloroplast	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	Thus, by editing the rpoB mRNA, OsPPR16 is required for faithful plastid transcription, which in turn is required for chlorophyll synthesis and efficient chloroplast development
OsPPR16	Os06g0112000	LOC_Os06g02200	leaf development	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.
OsPPR16	Os06g0112000	LOC_Os06g02200	development	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.
OsPPR16	Os06g0112000	LOC_Os06g02200	development	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	In striking contrast to loss-of-function mutations of the putative orthologue in Arabidopsis, which were  reported to have no visible phenotype, knock-out of OsPPR16 leads to impaired accumulation of RpoB, reduced expression of PEP-dependent genes and a pale phenotype during early plant development
OsPPR16	Os06g0112000	LOC_Os06g02200	development	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	Thus, by editing the rpoB mRNA, OsPPR16 is required for faithful plastid transcription, which in turn is required for chlorophyll synthesis and efficient chloroplast development
OsPPR16	Os06g0112000	LOC_Os06g02200	plant development	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	In striking contrast to loss-of-function mutations of the putative orthologue in Arabidopsis, which were  reported to have no visible phenotype, knock-out of OsPPR16 leads to impaired accumulation of RpoB, reduced expression of PEP-dependent genes and a pale phenotype during early plant development
OsPPR16	Os06g0112000	LOC_Os06g02200	chloroplast development	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.
OsPPR16	Os06g0112000	LOC_Os06g02200	chloroplast development	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	Thus, by editing the rpoB mRNA, OsPPR16 is required for faithful plastid transcription, which in turn is required for chlorophyll synthesis and efficient chloroplast development
OsPPR6	Os05g0574800	LOC_Os05g49920	map-based cloning	OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice.	Using map-based cloning and complementation tests, we determined that OsPPR6 encoded a new Pentatricopeptide Repeat (PPR) protein localized in plastids
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	growth	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both Pollen Development and Plant Growth in Rice	Disruption of OsPPR676 resulted in growth retardation of plants and partial sterility of pollens
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	pollen	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both Pollen Development and Plant Growth in Rice	In this study, OsPPR676 was confirmed to be an interacted protein with Osj10gBTF3, β-subunit of nascent polypeptide-associated complex (β-NAC), by bimolecular fluorescence complementation assays, indicating that both proteins are probably involved in the same regulatory pathway of pollen development
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	pollen	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both Pollen Development and Plant Growth in Rice	Compared with other chloroplast-rich tissues, OsPPR676 was only weakly expressed in anther, but in the Mei and YM stages of pollen development, its expression was relatively strong in the tapetum
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	sterility	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both Pollen Development and Plant Growth in Rice	Disruption of OsPPR676 resulted in growth retardation of plants and partial sterility of pollens
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	development	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both Pollen Development and Plant Growth in Rice	In this study, OsPPR676 was confirmed to be an interacted protein with Osj10gBTF3, β-subunit of nascent polypeptide-associated complex (β-NAC), by bimolecular fluorescence complementation assays, indicating that both proteins are probably involved in the same regulatory pathway of pollen development
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	tapetum	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both Pollen Development and Plant Growth in Rice	Compared with other chloroplast-rich tissues, OsPPR676 was only weakly expressed in anther, but in the Mei and YM stages of pollen development, its expression was relatively strong in the tapetum
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	pollen development	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both Pollen Development and Plant Growth in Rice	In this study, OsPPR676 was confirmed to be an interacted protein with Osj10gBTF3, β-subunit of nascent polypeptide-associated complex (β-NAC), by bimolecular fluorescence complementation assays, indicating that both proteins are probably involved in the same regulatory pathway of pollen development
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	pollen development	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both Pollen Development and Plant Growth in Rice	Compared with other chloroplast-rich tissues, OsPPR676 was only weakly expressed in anther, but in the Mei and YM stages of pollen development, its expression was relatively strong in the tapetum
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	cold	The PPR-SMR protein ATP4 is required for editing the chloroplast rps8 mRNA in rice and maize	osatp4 mutants were chlorotic and had a plastid-ribosome deficiency when grown in the cold
OsPPR676|OsATP4	Os03g0215900	LOC_Os03g11670	cold	The PPR-SMR protein ATP4 is required for editing the chloroplast rps8 mRNA in rice and maize	Expression of the edited rps8 isoform in transgenic osatp4 mutants complemented the cold-sensitive phenotype, indicating that a rps8 expression defect accounts for the cold sensitivity
OsPPT1	Os08g0322600	LOC_Os08g23320	growth	Functional characterization of OsPPT1, which encodes p-hydroxybenzoate polyprenyltransferase involved in ubiquinone biosynthesis in Oryza sativa	A yeast complementation study revealed that OsPPT1a expression successfully recovered the growth defect of the coq2 mutant
OsPPT1	Os08g0322600	LOC_Os08g23320	mitochondria	Functional characterization of OsPPT1, which encodes p-hydroxybenzoate polyprenyltransferase involved in ubiquinone biosynthesis in Oryza sativa	The deduced amino acid sequence of OsPPT1a contained a putative mitochondrial sorting signal at the N-terminus and conserved domains for putative substrate-binding sites typical of PPT protein family members
OsPPT1	Os08g0322600	LOC_Os08g23320	mitochondria	Functional characterization of OsPPT1, which encodes p-hydroxybenzoate polyprenyltransferase involved in ubiquinone biosynthesis in Oryza sativa	The subcellular localization of OsPPT1a protein was shown to be mainly in mitochondria based on studies using a green fluorescent protein-PPT fusion
OsPQT3	Os10g0431000	LOC_Os10g29560	resistance	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
OsPQT3	Os10g0431000	LOC_Os10g29560	salt	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
OsPQT3	Os10g0431000	LOC_Os10g29560	salt	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	More importantly, the ospqt3 mutants show significantly enhanced agronomic performance with higher yield compared with the wild type under salt stress in greenhouse as well as in field conditions
OsPQT3	Os10g0431000	LOC_Os10g29560	yield	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	More importantly, the ospqt3 mutants show significantly enhanced agronomic performance with higher yield compared with the wild type under salt stress in greenhouse as well as in field conditions
OsPQT3	Os10g0431000	LOC_Os10g29560	oxidative	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
OsPQT3	Os10g0431000	LOC_Os10g29560	oxidative	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	We further showed that OsPQT3 expression rapidly decreased in response to oxidative and other abiotic stresses as AtPQT3 does
OsPQT3	Os10g0431000	LOC_Os10g29560	abiotic stress	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	We further showed that OsPQT3 expression rapidly decreased in response to oxidative and other abiotic stresses as AtPQT3 does
OsPQT3	Os10g0431000	LOC_Os10g29560	salt stress	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
OsPQT3	Os10g0431000	LOC_Os10g29560	salt stress	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	More importantly, the ospqt3 mutants show significantly enhanced agronomic performance with higher yield compared with the wild type under salt stress in greenhouse as well as in field conditions
OsPQT3	Os10g0431000	LOC_Os10g29560	stress	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
OsPQT3	Os10g0431000	LOC_Os10g29560	stress	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	More importantly, the ospqt3 mutants show significantly enhanced agronomic performance with higher yield compared with the wild type under salt stress in greenhouse as well as in field conditions
OsPQT3	Os10g0431000	LOC_Os10g29560	stress	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	Taken together, these results show that OsPQT3 is functionally well conserved in rice as an off-switch in stress response as AtPQT3 in Arabidopsis
OsPQT3	Os10g0431000	LOC_Os10g29560	biotic stress	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	We further showed that OsPQT3 expression rapidly decreased in response to oxidative and other abiotic stresses as AtPQT3 does
OsPQT3	Os10g0431000	LOC_Os10g29560	stress response	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	Taken together, these results show that OsPQT3 is functionally well conserved in rice as an off-switch in stress response as AtPQT3 in Arabidopsis
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	gibberellin	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	blast	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	These results suggest that the expression of PBZ1 is regulated by GA signalling and stress stimuli, and that gid1 is involved in tolerance to cold stress and resistance to blast fungus
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	blast	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	When transgenic plants were inoculated with virulent blast fungus (Magnaporthe grisea), they developed many resistant-type lesions on the inoculated leaf accompanying earlier activation of defense-related genes PR-1 and PBZ1 than in control plants
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	salicylic acid	Characterization of PBZ1, a Probenazole-inducible Gene, in Suspension-Cultured Rice Cells	Both mRNA and protein analysis showed that PBZ1 was not induced by salicylic acid or an active metabolite, 1,2-benzisothiazole-1,1-dioxide
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	defense	Gene editing a constitutively active OsRac1 by homologous recombination-based gene targeting induces immune responses in rice	However, upon chitin treatment, the expression of defense-related genes PAL1 and PBZ1 in the cell culture was greater in the mutants compared with wild-type plants
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	resistant	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	When transgenic plants were inoculated with virulent blast fungus (Magnaporthe grisea), they developed many resistant-type lesions on the inoculated leaf accompanying earlier activation of defense-related genes PR-1 and PBZ1 than in control plants
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	cold stress	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	These results suggest that the expression of PBZ1 is regulated by GA signalling and stress stimuli, and that gid1 is involved in tolerance to cold stress and resistance to blast fungus
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	cold stress	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	leaf	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	When transgenic plants were inoculated with virulent blast fungus (Magnaporthe grisea), they developed many resistant-type lesions on the inoculated leaf accompanying earlier activation of defense-related genes PR-1 and PBZ1 than in control plants
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	jasmonic	Identification of an OsPR10a promoter region responsive to salicylic acid	Orysa sativa pathogenesis-related protein 10a (OsPR10a) was induced by pathogens, salicylic acid (SA), jasmonic acid (JA), ethephon, abscisic acid (ABA), and NaCl
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	blast	Characterization of PBZ1, a Probenazole-inducible Gene, in Suspension-Cultured Rice Cells	Probenazole (PBZ) induces non-race specific resistance in rice plants against rice blast fungus and PBZ1 was identified as a PBZ-inducible gene from rice
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	defense	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1	When transgenic plants were inoculated with virulent blast fungus (Magnaporthe grisea), they developed many resistant-type lesions on the inoculated leaf accompanying earlier activation of defense-related genes PR-1 and PBZ1 than in control plants
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	dwarf	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	defense	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	The lines with overexpression showed constitutive expression of many defense-related genes, such as PBZ1 and OsSci2, as well as early auxin-response genes, such as OsIAA4 and OsCrl1 genes
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	defense	OsRap2.6 transcription factor contributes to rice innate immunity through its interaction with Receptor for Activated Kinase-C 1 (RACK1)	Expression of defense genes PAL1 and PBZ1 as well as OsRap2
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	leaf	Cytokinins act synergistically with salicylic acid to activate defense gene expression in rice	Co-treatment of leaf blades with CK and salicylic acid (SA), but not with either one alone, markedly induced pathogenesis-related genes OsPR1b and probenazole-induced protein 1 (PBZ1)
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	ga	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	These results suggest that the expression of PBZ1 is regulated by GA signalling and stress stimuli, and that gid1 is involved in tolerance to cold stress and resistance to blast fungus
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	salicylic acid	Cytokinins act synergistically with salicylic acid to activate defense gene expression in rice	Co-treatment of leaf blades with CK and salicylic acid (SA), but not with either one alone, markedly induced pathogenesis-related genes OsPR1b and probenazole-induced protein 1 (PBZ1)
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	growth	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack	Under normal growth conditions, there was more PBZ1 protein in gid1 than in the wild type
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	jasmonic acid	Identification of an OsPR10a promoter region responsive to salicylic acid	Orysa sativa pathogenesis-related protein 10a (OsPR10a) was induced by pathogens, salicylic acid (SA), jasmonic acid (JA), ethephon, abscisic acid (ABA), and NaCl
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	salicylic acid	Identification of an OsPR10a promoter region responsive to salicylic acid	Orysa sativa pathogenesis-related protein 10a (OsPR10a) was induced by pathogens, salicylic acid (SA), jasmonic acid (JA), ethephon, abscisic acid (ABA), and NaCl
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	salicylic acid	Identification of an OsPR10a promoter region responsive to salicylic acid	Identification of an OsPR10a promoter region responsive to salicylic acid
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	auxin	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	The lines with overexpression showed constitutive expression of many defense-related genes, such as PBZ1 and OsSci2, as well as early auxin-response genes, such as OsIAA4 and OsCrl1 genes
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	iaa	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	The lines with overexpression showed constitutive expression of many defense-related genes, such as PBZ1 and OsSci2, as well as early auxin-response genes, such as OsIAA4 and OsCrl1 genes
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	sa	Identification of an OsPR10a promoter region responsive to salicylic acid	We demonstrated the inducibility of OsPR10a promoter by SA using transgenic Arabidopsis carrying OsPR10a:GFP as well as by transient expression assays in rice
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	root	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	Transgenic rice and Arabidopsis overexpressing OsPR10a significantly increased the length of primary root under phosphate deficiency (-Pi) condition
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	resistance	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	These results showed that OsPR10a might play multiple roles in phosphate recycling in phosphate-starved cells and senescing leaves, and could improve resistance to pathogen infection and/or against chewing insect pests
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	resistance	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	Our findings suggest that gene regulation of OsPR10a could act as a good model system to unravel the mechanisms behind the correlation between Pi starvation and plant-pathogen interactions, and also provides a potential application in crops disease resistance
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	insect	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	These results showed that OsPR10a might play multiple roles in phosphate recycling in phosphate-starved cells and senescing leaves, and could improve resistance to pathogen infection and/or against chewing insect pests
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	disease	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	Our findings suggest that gene regulation of OsPR10a could act as a good model system to unravel the mechanisms behind the correlation between Pi starvation and plant-pathogen interactions, and also provides a potential application in crops disease resistance
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	disease resistance	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	Our findings suggest that gene regulation of OsPR10a could act as a good model system to unravel the mechanisms behind the correlation between Pi starvation and plant-pathogen interactions, and also provides a potential application in crops disease resistance
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	primary root	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	Transgenic rice and Arabidopsis overexpressing OsPR10a significantly increased the length of primary root under phosphate deficiency (-Pi) condition
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	Pi	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	Our findings suggest that gene regulation of OsPR10a could act as a good model system to unravel the mechanisms behind the correlation between Pi starvation and plant-pathogen interactions, and also provides a potential application in crops disease resistance
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	phosphate	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	Transgenic rice and Arabidopsis overexpressing OsPR10a significantly increased the length of primary root under phosphate deficiency (-Pi) condition
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	phosphate	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	These results showed that OsPR10a might play multiple roles in phosphate recycling in phosphate-starved cells and senescing leaves, and could improve resistance to pathogen infection and/or against chewing insect pests
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	pi	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	Our findings suggest that gene regulation of OsPR10a could act as a good model system to unravel the mechanisms behind the correlation between Pi starvation and plant-pathogen interactions, and also provides a potential application in crops disease resistance
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	pathogen	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring Disease Resistance in Rice and Arabidopsis.	These results showed that OsPR10a might play multiple roles in phosphate recycling in phosphate-starved cells and senescing leaves, and could improve resistance to pathogen infection and/or against chewing insect pests
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	disease	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	salicylic acid	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	OsPR10a and OsCDPK1 showed corresponding expression patterns and were up-regulated in response to the jasmonic acid, salicylic acid and Xoo treatments, and OsPR1 and OsPR4 were significantly up-regulated in OEtr-1
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	disease resistance	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	jasmonic	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	OsPR10a and OsCDPK1 showed corresponding expression patterns and were up-regulated in response to the jasmonic acid, salicylic acid and Xoo treatments, and OsPR1 and OsPR4 were significantly up-regulated in OEtr-1
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	jasmonic acid	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	OsPR10a and OsCDPK1 showed corresponding expression patterns and were up-regulated in response to the jasmonic acid, salicylic acid and Xoo treatments, and OsPR1 and OsPR4 were significantly up-regulated in OEtr-1
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	xoo	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	OsPR10a and OsCDPK1 showed corresponding expression patterns and were up-regulated in response to the jasmonic acid, salicylic acid and Xoo treatments, and OsPR1 and OsPR4 were significantly up-regulated in OEtr-1
OsPR10a|PBZ1	Os12g0555500	LOC_Os12g36880	pathogen	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	The rice pathogenesis-related protein OsPR10a was scarcely expressed in OsCDPK1-silenced (Ri-1) rice, which was highly sensitive to pathogen infection
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	leaf	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	A novel rice acidic pathogenesis-related (PR) class 1 cDNA (OsPR1a) was isolated from jasmonic acid (JA)-treated rice seedling leaf
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	sa	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	SA and abscisic acid blocked JA-induced OsPR1a transcript
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	jasmonic acid	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	A novel rice acidic pathogenesis-related (PR) class 1 cDNA (OsPR1a) was isolated from jasmonic acid (JA)-treated rice seedling leaf
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	jasmonic	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	A novel rice acidic pathogenesis-related (PR) class 1 cDNA (OsPR1a) was isolated from jasmonic acid (JA)-treated rice seedling leaf
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	phytohormone	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	The OsPR1a gene was found to be cut-inducible, whereas the phytohormones JA, salicylic acid (SA), 3-indoleacetic acid, gibberellin, and ethylene (using ethylene generator ethephon, ET) enhanced accumulation of OsPR1a transcript, as well as the protein phosphatase inhibitors cantharidin (CN) and endothall (EN)
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	phytohormone	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	This is the first report on cloning of a rice acidic PR1 gene (OsPR1a), which is regulated by phytohormones, phosphorylation/dephosphorylation event(s), and light
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	pi	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	The OsPR1a cDNA is 830 bp long and contains an open reading frame of 507 nucleotides encoding 168 amino acid residues with a predicted molecular mass of 17,560 and pI of 4
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	ethylene	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	The OsPR1a gene was found to be cut-inducible, whereas the phytohormones JA, salicylic acid (SA), 3-indoleacetic acid, gibberellin, and ethylene (using ethylene generator ethephon, ET) enhanced accumulation of OsPR1a transcript, as well as the protein phosphatase inhibitors cantharidin (CN) and endothall (EN)
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	salicylic acid	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	The OsPR1a gene was found to be cut-inducible, whereas the phytohormones JA, salicylic acid (SA), 3-indoleacetic acid, gibberellin, and ethylene (using ethylene generator ethephon, ET) enhanced accumulation of OsPR1a transcript, as well as the protein phosphatase inhibitors cantharidin (CN) and endothall (EN)
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	gibberellin	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	The OsPR1a gene was found to be cut-inducible, whereas the phytohormones JA, salicylic acid (SA), 3-indoleacetic acid, gibberellin, and ethylene (using ethylene generator ethephon, ET) enhanced accumulation of OsPR1a transcript, as well as the protein phosphatase inhibitors cantharidin (CN) and endothall (EN)
OsPR1a|OsSCP	Os07g0129200	LOC_Os07g03710	seedling	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors	A novel rice acidic pathogenesis-related (PR) class 1 cDNA (OsPR1a) was isolated from jasmonic acid (JA)-treated rice seedling leaf
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	defense response	The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice	Exogenous ET (ethephon) and JA (methyl jasmonate) supply on the shoots induced a strong systemic defense response in the roots, exemplified by a major up-regulation of pathogenesis-related genes OsPR1a and OsPR1b, while the salicylic acid analog BTH (benzo-1,2,3-thiadiazole-7-carbothioic acid S-methyl ester) was a less potent systemic defense inducer from shoot to root
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	jasmonic acid	Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signals	Here, we report characterization of a rice basic PR1 (OsPR1b) gene, identified from screening a cDNA library prepared from jasmonic acid (JA)-treated rice seedling leaf, providing detailed and valuable insights into rice PR1 gene expression
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	leaf	Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signals	Here, we report characterization of a rice basic PR1 (OsPR1b) gene, identified from screening a cDNA library prepared from jasmonic acid (JA)-treated rice seedling leaf, providing detailed and valuable insights into rice PR1 gene expression
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	salicylic acid	The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice	Exogenous ET (ethephon) and JA (methyl jasmonate) supply on the shoots induced a strong systemic defense response in the roots, exemplified by a major up-regulation of pathogenesis-related genes OsPR1a and OsPR1b, while the salicylic acid analog BTH (benzo-1,2,3-thiadiazole-7-carbothioic acid S-methyl ester) was a less potent systemic defense inducer from shoot to root
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	leaf	Cytokinins act synergistically with salicylic acid to activate defense gene expression in rice	Co-treatment of leaf blades with CK and salicylic acid (SA), but not with either one alone, markedly induced pathogenesis-related genes OsPR1b and probenazole-induced protein 1 (PBZ1)
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	shoot	The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice	Exogenous ET (ethephon) and JA (methyl jasmonate) supply on the shoots induced a strong systemic defense response in the roots, exemplified by a major up-regulation of pathogenesis-related genes OsPR1a and OsPR1b, while the salicylic acid analog BTH (benzo-1,2,3-thiadiazole-7-carbothioic acid S-methyl ester) was a less potent systemic defense inducer from shoot to root
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	sa	Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signals	The simultaneous application of SA, and ABA, with JA, respectively, showed almost complete inhibition of the JA-induced OsPR1b transcript by 200 microM SA or ABA, but not by 100 microM concentrated solutions, suggesting a potential interaction among JA, SA, and ABA, whereas KN dramatically enhanced JA-induced OsPR1b transcript upon simultaneous application
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	salicylic acid	Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signals	The JA-inducible OsPR1b gene was also up-regulated by salicylic acid (SA), abscisic acid (ABA), and kinetin (KN)
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	jasmonic	Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signals	Here, we report characterization of a rice basic PR1 (OsPR1b) gene, identified from screening a cDNA library prepared from jasmonic acid (JA)-treated rice seedling leaf, providing detailed and valuable insights into rice PR1 gene expression
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	defense	OsWRKY71, a rice transcription factor, is involved in rice defense response	Furthermore, two marker genes in defense signaling pathway, OsNPR1 and OsPR1b, were constitutively expressed in OsWRKY71-overexpressing transgenic plants
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	defense	OsWRKY71, a rice transcription factor, is involved in rice defense response	These results suggest that OsWRKY71 might function as a transcriptional regulator upstream of OsNPR1 and OsPR1b in rice defense signaling pathways
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	defense	The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice	Exogenous ET (ethephon) and JA (methyl jasmonate) supply on the shoots induced a strong systemic defense response in the roots, exemplified by a major up-regulation of pathogenesis-related genes OsPR1a and OsPR1b, while the salicylic acid analog BTH (benzo-1,2,3-thiadiazole-7-carbothioic acid S-methyl ester) was a less potent systemic defense inducer from shoot to root
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	root	The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice	Exogenous ET (ethephon) and JA (methyl jasmonate) supply on the shoots induced a strong systemic defense response in the roots, exemplified by a major up-regulation of pathogenesis-related genes OsPR1a and OsPR1b, while the salicylic acid analog BTH (benzo-1,2,3-thiadiazole-7-carbothioic acid S-methyl ester) was a less potent systemic defense inducer from shoot to root
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	salicylic acid	Cytokinins act synergistically with salicylic acid to activate defense gene expression in rice	Co-treatment of leaf blades with CK and salicylic acid (SA), but not with either one alone, markedly induced pathogenesis-related genes OsPR1b and probenazole-induced protein 1 (PBZ1)
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	ja	The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice	Exogenous ET (ethephon) and JA (methyl jasmonate) supply on the shoots induced a strong systemic defense response in the roots, exemplified by a major up-regulation of pathogenesis-related genes OsPR1a and OsPR1b, while the salicylic acid analog BTH (benzo-1,2,3-thiadiazole-7-carbothioic acid S-methyl ester) was a less potent systemic defense inducer from shoot to root
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	jasmonate	The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice	Exogenous ET (ethephon) and JA (methyl jasmonate) supply on the shoots induced a strong systemic defense response in the roots, exemplified by a major up-regulation of pathogenesis-related genes OsPR1a and OsPR1b, while the salicylic acid analog BTH (benzo-1,2,3-thiadiazole-7-carbothioic acid S-methyl ester) was a less potent systemic defense inducer from shoot to root
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	seedling	Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signals	Here, we report characterization of a rice basic PR1 (OsPR1b) gene, identified from screening a cDNA library prepared from jasmonic acid (JA)-treated rice seedling leaf, providing detailed and valuable insights into rice PR1 gene expression
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	resistance	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	We postulated that OsPR1b may participate in the resistance signaling pathway of rice
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	ja	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	Of simultaneous treatments with hormones and pathogenic bacteria, exogenously applying JA and ET significantly increased the expression level of OsPR1b genes in seedlings
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	ja	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	However, cotreatment with JA or ET and pathogenic bacteria managed to significantly upregulate the expression level of the OsPR1b gene by 4
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	JA	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	Of simultaneous treatments with hormones and pathogenic bacteria, exogenously applying JA and ET significantly increased the expression level of OsPR1b genes in seedlings
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	JA	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	However, cotreatment with JA or ET and pathogenic bacteria managed to significantly upregulate the expression level of the OsPR1b gene by 4
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	sa	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	Compared with the control group that was inoculated with water, inoculation with a mixture of water and pathogenic bacteria hardly affected the expression level of OsPR1b gene, while cotreatment with SA and pathogenic bacteria slightly upregulated the expression level
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	seedlings	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	Of simultaneous treatments with hormones and pathogenic bacteria, exogenously applying JA and ET significantly increased the expression level of OsPR1b genes in seedlings
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	SA	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	Compared with the control group that was inoculated with water, inoculation with a mixture of water and pathogenic bacteria hardly affected the expression level of OsPR1b gene, while cotreatment with SA and pathogenic bacteria slightly upregulated the expression level
OsPR1b|PR1b	Os01g0382000	LOC_Os01g28450	pathogen	Identification of a small set of genes commonly regulated in rice roots in response to beneficial rhizobacteria	Interestingly, exposure to a rice bacterial pathogen also triggered the expression of OsDXS3 while the expression of Os02g0582900 and PR1b was down-regulated, suggesting that these genes might play a key role in rice-bacteria interactions
OsPRA1	Os05g0474400	LOC_Os05g39670	stem	The role of OsPRA1 in vacuolar trafficking by OsRab GTPases in plant system	In addition, GFP-fusion analysis demonstrated that OsPRA1 localized to the prevacuolar compartment, and RNA gel blot analysis revealed its significant expression in rice green-aerial tissues such as shoots and mature stems
OsPRA1	Os05g0474400	LOC_Os05g39670	stem	The role of OsPRA1 in vacuolar trafficking by OsRab GTPases in plant system	These results suggest that OsPRA1 may function as a Rab effector for vacuolar trafficking in the plant system
OsPRA1	Os05g0474400	LOC_Os05g39670	stem	The role of OsPRA1 in vacuolar trafficking by OsRab GTPases in plant system	The role of OsPRA1 in vacuolar trafficking by OsRab GTPases in plant system
OsPRA1	Os05g0474400	LOC_Os05g39670	shoot	The role of OsPRA1 in vacuolar trafficking by OsRab GTPases in plant system	In addition, GFP-fusion analysis demonstrated that OsPRA1 localized to the prevacuolar compartment, and RNA gel blot analysis revealed its significant expression in rice green-aerial tissues such as shoots and mature stems
OsPRA2	Os06g0714600	LOC_Os06g50060	root	A Small G Protein as a Novel Component of the Rice Brassinosteroid Signal Transduction.	Lamina inclination, coleoptile elongation, and root inhibition assays indicated that rice plants with suppressed expression of OsPRA2 were more sensitive to exogenously applied brassinolide than wild-type plants
OsPRA2	Os06g0714600	LOC_Os06g50060	transcription factor	A Small G Protein as a Novel Component of the Rice Brassinosteroid Signal Transduction.	Mechanistic study uncovered that OsPRA2 inhibited the dephosphorylation of, and thus inactivated the transcription factor BRASSINAZOLE-RESISTANT 1 (OsBZR1)
OsPRA2	Os06g0714600	LOC_Os06g50060	BR	A Small G Protein as a Novel Component of the Rice Brassinosteroid Signal Transduction.	More importantly, OsPRA2 was found to co-localize with and directly bind to rice BR receptor BRASSINOSTEROID-INSENSITIVE 1 (OsBRI1) on the plasma membrane
OsPRA2	Os06g0714600	LOC_Os06g50060	BR	A Small G Protein as a Novel Component of the Rice Brassinosteroid Signal Transduction.	Together, these results revealed a possible working mechanism of OsPRA2 as a novel negative regulator on OsBRI1 and OsBZR1 in the BR signaling pathway in rice, and further extended the knowledge about the regulatory mechanism of rice BR signaling
OsPRA2	Os06g0714600	LOC_Os06g50060	BR signaling	A Small G Protein as a Novel Component of the Rice Brassinosteroid Signal Transduction.	Together, these results revealed a possible working mechanism of OsPRA2 as a novel negative regulator on OsBRI1 and OsBZR1 in the BR signaling pathway in rice, and further extended the knowledge about the regulatory mechanism of rice BR signaling
OsPRA2	Os06g0714600	LOC_Os06g50060	lamina	A Small G Protein as a Novel Component of the Rice Brassinosteroid Signal Transduction.	Lamina inclination, coleoptile elongation, and root inhibition assays indicated that rice plants with suppressed expression of OsPRA2 were more sensitive to exogenously applied brassinolide than wild-type plants
OsPRA2	Os06g0714600	LOC_Os06g50060	plasma membrane	A Small G Protein as a Novel Component of the Rice Brassinosteroid Signal Transduction.	More importantly, OsPRA2 was found to co-localize with and directly bind to rice BR receptor BRASSINOSTEROID-INSENSITIVE 1 (OsBRI1) on the plasma membrane
OsPRA2	Os06g0714600	LOC_Os06g50060	brassinosteroid	OsPRA2 fine-tunes rice brassinosteroid receptor.	OsPRA2 fine-tunes rice brassinosteroid receptor.
OsPRA2	Os06g0714600	LOC_Os06g50060	BR	OsPRA2 fine-tunes rice brassinosteroid receptor.	Overexpression of OsGAP1 in Arabidopsis resulted in a phenotype mimic to BR-deficiency, implying that the GTPase activity of OsPRA2 is also involved in regulating BR signaling
OsPRA2	Os06g0714600	LOC_Os06g50060	Brassinosteroid	OsPRA2 fine-tunes rice brassinosteroid receptor.	OsPRA2 fine-tunes rice brassinosteroid receptor.
OsPRA2	Os06g0714600	LOC_Os06g50060	BR signaling	OsPRA2 fine-tunes rice brassinosteroid receptor.	Overexpression of OsGAP1 in Arabidopsis resulted in a phenotype mimic to BR-deficiency, implying that the GTPase activity of OsPRA2 is also involved in regulating BR signaling
OsPRD2	Os08g0555800	LOC_Os08g44180	meiosis	OsPRD2 is essential for double-strand break formation, but not spindle assembly during rice meiosis.	 OsPRD2 showed a dynamic localization during meiosis
OsPRD2	Os08g0555800	LOC_Os08g44180	sterile	OsPRD2 is essential for double-strand break formation, but not spindle assembly during rice meiosis.	 The osprd2 mutant was completely male and female sterile
OsProDH	Os10g0550900	LOC_Os10g40360	leaf	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	Findings: Quantitative RT-PCR analysis revealed that OsProDH transcript contents were relatively higher in leaf blade and root tissues and the high temperature treatment repressed expression of OsProDH
OsProDH	Os10g0550900	LOC_Os10g40360	seedlings	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	Heat stress induced proline accumulation and mutation of OsProDH led to proline overproduction which reduced H2O2 accumulation in the seedlings
OsProDH	Os10g0550900	LOC_Os10g40360	root	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	Findings: Quantitative RT-PCR analysis revealed that OsProDH transcript contents were relatively higher in leaf blade and root tissues and the high temperature treatment repressed expression of OsProDH
OsProDH	Os10g0550900	LOC_Os10g40360	temperature	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	Findings: Quantitative RT-PCR analysis revealed that OsProDH transcript contents were relatively higher in leaf blade and root tissues and the high temperature treatment repressed expression of OsProDH
OsProDH	Os10g0550900	LOC_Os10g40360	mitochondria	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	The predicted OsProDH protein localized in mitochondria
OsProDH	Os10g0550900	LOC_Os10g40360	abiotic stress	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	However, whether OsProDH plays roles in abiotic stress in rice remains unknown
OsProDH	Os10g0550900	LOC_Os10g40360	stress	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	However, whether OsProDH plays roles in abiotic stress in rice remains unknown
OsProDH	Os10g0550900	LOC_Os10g40360	stress	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	Heat stress induced proline accumulation and mutation of OsProDH led to proline overproduction which reduced H2O2 accumulation in the seedlings
OsProDH	Os10g0550900	LOC_Os10g40360	biotic stress	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	However, whether OsProDH plays roles in abiotic stress in rice remains unknown
OsProDH	Os10g0550900	LOC_Os10g40360	reactive oxygen species	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging
OsProDH	Os10g0550900	LOC_Os10g40360	dehydrogenase	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	OsProDH encodes a putative proline dehydrogenase and is a single copy gene in rice
OsProDH	Os10g0550900	LOC_Os10g40360	heat stress	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	Heat stress induced proline accumulation and mutation of OsProDH led to proline overproduction which reduced H2O2 accumulation in the seedlings
OsProDH	Os10g0550900	LOC_Os10g40360	Heat Stress	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging	Heat stress induced proline accumulation and mutation of OsProDH led to proline overproduction which reduced H2O2 accumulation in the seedlings
OsProT|ProT	Os03g0644400	LOC_Os03g44230	salt stress	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsProT|ProT	Os03g0644400	LOC_Os03g44230	drought	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	We previously identified a salt and drought stress-responsive TFIIIA-type zinc finger protein gene ZFP252 from rice
OsProT|ProT	Os03g0644400	LOC_Os03g44230	drought	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)
OsProT|ProT	Os03g0644400	LOC_Os03g44230	oxidative	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsProT|ProT	Os03g0644400	LOC_Os03g44230	salt tolerance	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)
OsProT|ProT	Os03g0644400	LOC_Os03g44230	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsProT|ProT	Os03g0644400	LOC_Os03g44230	seedling	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Through microarray analysis, a salt-responsive zinc finger protein gene ZFP179 was identified and subsequently cloned from rice seedlings
OsProT|ProT	Os03g0644400	LOC_Os03g44230	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Through microarray analysis, a salt-responsive zinc finger protein gene ZFP179 was identified and subsequently cloned from rice seedlings
OsProT|ProT	Os03g0644400	LOC_Os03g44230	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
OsProT|ProT	Os03g0644400	LOC_Os03g44230	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice
OsProT|ProT	Os03g0644400	LOC_Os03g44230	salt	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	We previously identified a salt and drought stress-responsive TFIIIA-type zinc finger protein gene ZFP252 from rice
OsProT|ProT	Os03g0644400	LOC_Os03g44230	salt	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)
OsProT|ProT	Os03g0644400	LOC_Os03g44230	salt tolerance	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice
OsProT1	Os01g0908600	LOC_Os01g68050	leaf	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	qRT-PCR analyses suggested that OsProT1 was preferentially expressed in leaf sheathes during vegetative growth, while OsProT3 exhibited relatively high expression levels in several tissues, including nodes, panicles and roots
OsProT1	Os01g0908600	LOC_Os01g68050	vegetative	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	qRT-PCR analyses suggested that OsProT1 was preferentially expressed in leaf sheathes during vegetative growth, while OsProT3 exhibited relatively high expression levels in several tissues, including nodes, panicles and roots
OsProT1	Os01g0908600	LOC_Os01g68050	stress	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Interestingly, both OsProT1 and OsProT3 were induced by cadmium stress in rice shoots
OsProT1	Os01g0908600	LOC_Os01g68050	stress	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Our results suggested that plasma membrane-localized OsProT1 and OsProT3 efficiently transport Pro and GABA when ectopically expressed in yeast and appear to be involved in various physiological processes, including adaption to cadmium stress in rice plants
OsProT1	Os01g0908600	LOC_Os01g68050	plasma membrane	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Transient expression of eGFP-OsProTs in plant protoplasts revealed that both OsProT1 and OsProT3 are localized to the plasma membrane
OsProT1	Os01g0908600	LOC_Os01g68050	plasma membrane	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Our results suggested that plasma membrane-localized OsProT1 and OsProT3 efficiently transport Pro and GABA when ectopically expressed in yeast and appear to be involved in various physiological processes, including adaption to cadmium stress in rice plants
OsProT1	Os01g0908600	LOC_Os01g68050	cadmium	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Interestingly, both OsProT1 and OsProT3 were induced by cadmium stress in rice shoots
OsProT1	Os01g0908600	LOC_Os01g68050	cadmium	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Our results suggested that plasma membrane-localized OsProT1 and OsProT3 efficiently transport Pro and GABA when ectopically expressed in yeast and appear to be involved in various physiological processes, including adaption to cadmium stress in rice plants
OsProT1	Os01g0908600	LOC_Os01g68050	aminobutyric acid	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	OsProT1 and OsProT3 Function to Mediate Proline- and aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).
OsProT3	Os07g0100800	LOC_Os07g01090	leaf	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	qRT-PCR analyses suggested that OsProT1 was preferentially expressed in leaf sheathes during vegetative growth, while OsProT3 exhibited relatively high expression levels in several tissues, including nodes, panicles and roots
OsProT3	Os07g0100800	LOC_Os07g01090	vegetative	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	qRT-PCR analyses suggested that OsProT1 was preferentially expressed in leaf sheathes during vegetative growth, while OsProT3 exhibited relatively high expression levels in several tissues, including nodes, panicles and roots
OsProT3	Os07g0100800	LOC_Os07g01090	stress	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Interestingly, both OsProT1 and OsProT3 were induced by cadmium stress in rice shoots
OsProT3	Os07g0100800	LOC_Os07g01090	stress	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Our results suggested that plasma membrane-localized OsProT1 and OsProT3 efficiently transport Pro and GABA when ectopically expressed in yeast and appear to be involved in various physiological processes, including adaption to cadmium stress in rice plants
OsProT3	Os07g0100800	LOC_Os07g01090	plasma membrane	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Transient expression of eGFP-OsProTs in plant protoplasts revealed that both OsProT1 and OsProT3 are localized to the plasma membrane
OsProT3	Os07g0100800	LOC_Os07g01090	plasma membrane	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Our results suggested that plasma membrane-localized OsProT1 and OsProT3 efficiently transport Pro and GABA when ectopically expressed in yeast and appear to be involved in various physiological processes, including adaption to cadmium stress in rice plants
OsProT3	Os07g0100800	LOC_Os07g01090	cadmium	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Interestingly, both OsProT1 and OsProT3 were induced by cadmium stress in rice shoots
OsProT3	Os07g0100800	LOC_Os07g01090	cadmium	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Our results suggested that plasma membrane-localized OsProT1 and OsProT3 efficiently transport Pro and GABA when ectopically expressed in yeast and appear to be involved in various physiological processes, including adaption to cadmium stress in rice plants
OsProT3	Os07g0100800	LOC_Os07g01090	aminobutyric acid	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	OsProT1 and OsProT3 Function to Mediate Proline- and -aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).
OsPRP|RePRP1.1	Os05g0226900	LOC_Os05g13900	seedling	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)	The expression of OsPRP was relatively uniform in the young seedlings
OsPRP|RePRP1.1	Os05g0226900	LOC_Os05g13900	shoot	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)	However, tissue-specific expression of OsPRP indicated that shoot tissue accumulates more mRNA, and the root has relatively low expression
OsPRP|RePRP1.1	Os05g0226900	LOC_Os05g13900	root	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)	However, tissue-specific expression of OsPRP indicated that shoot tissue accumulates more mRNA, and the root has relatively low expression
OsPRP|RePRP1.1	Os05g0226900	LOC_Os05g13900	jasmonate	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)	Exogenous application of growth hormones, namely abscisic acid (ABA), methyl jasmonate (MeJ) and ethephon caused significant repression of the OsPRP transcript
OsPRP|RePRP1.1	Os05g0226900	LOC_Os05g13900	submergence	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)	In addition, OsPRP expression is regulated by various environmental factors and is down-regulated under submergence stress
OsPRP|RePRP1.1	Os05g0226900	LOC_Os05g13900	submergence	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)
OsPRP|RePRP1.1	Os05g0226900	LOC_Os05g13900	growth	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)	Exogenous application of growth hormones, namely abscisic acid (ABA), methyl jasmonate (MeJ) and ethephon caused significant repression of the OsPRP transcript
OsPRP1	Os10g0150800	LOC_Os10g06000	root	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	The OsPRP1 mutant plants displayed more sensitivity to cold stress and showed low survival rate with decreased root biomass than wild-type (WT) and homozygous mutant line with large fragment deletion was more sensitive to low temperature
OsPRP1	Os10g0150800	LOC_Os10g06000	temperature	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	The OsPRP1 mutant plants displayed more sensitivity to cold stress and showed low survival rate with decreased root biomass than wild-type (WT) and homozygous mutant line with large fragment deletion was more sensitive to low temperature
OsPRP1	Os10g0150800	LOC_Os10g06000	tolerance	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	These results suggested that OsPRP1 enhances cold tolerance by modulating antioxidants and maintaining cross talk through signaling pathways
OsPRP1	Os10g0150800	LOC_Os10g06000	tolerance	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	Therefore, OsPRP1 gene could be exploited for improving cold tolerance in rice and CRISPR/Cas9 technology is helpful to study the function of a gene by analyzing the phenotypes of knockout mutants generated
OsPRP1	Os10g0150800	LOC_Os10g06000	cold tolerance	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	These results suggested that OsPRP1 enhances cold tolerance by modulating antioxidants and maintaining cross talk through signaling pathways
OsPRP1	Os10g0150800	LOC_Os10g06000	cold tolerance	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	Therefore, OsPRP1 gene could be exploited for improving cold tolerance in rice and CRISPR/Cas9 technology is helpful to study the function of a gene by analyzing the phenotypes of knockout mutants generated
OsPRP1	Os10g0150800	LOC_Os10g06000	cold stress	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	Mutant plants were generated by CRISPR/Cas9 technology to investigate the role of OsPRP1 in cold stress and 26 mutant plants were obtained in T0 generation with the mutation rate of 85% including 15% bi-allelic, 53
OsPRP1	Os10g0150800	LOC_Os10g06000	cold stress	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	The OsPRP1 mutant plants displayed more sensitivity to cold stress and showed low survival rate with decreased root biomass than wild-type (WT) and homozygous mutant line with large fragment deletion was more sensitive to low temperature
OsPRP1	Os10g0150800	LOC_Os10g06000	stress	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	Mutant plants were generated by CRISPR/Cas9 technology to investigate the role of OsPRP1 in cold stress and 26 mutant plants were obtained in T0 generation with the mutation rate of 85% including 15% bi-allelic, 53
OsPRP1	Os10g0150800	LOC_Os10g06000	stress	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	The OsPRP1 mutant plants displayed more sensitivity to cold stress and showed low survival rate with decreased root biomass than wild-type (WT) and homozygous mutant line with large fragment deletion was more sensitive to low temperature
OsPRP1	Os10g0150800	LOC_Os10g06000	biomass	Knockout of OsPRP1, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (Oryza sativa L.) at the seedling stage.	The OsPRP1 mutant plants displayed more sensitivity to cold stress and showed low survival rate with decreased root biomass than wild-type (WT) and homozygous mutant line with large fragment deletion was more sensitive to low temperature
OsPRP3	Os10g0148100	LOC_Os10g05750	cell wall	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	Further the microscopic analysis revealed that OsPRP3 enhances the cell wall integrity in the cold tolerant plant and confers cold-tolerance in rice
OsPRP3	Os10g0148100	LOC_Os10g05750	cell wall	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	Taken together, the results suggested that OsPRP3 is a cell wall protein, playing a crucial role in determining extracellular matrix structure of floral organs
OsPRP3	Os10g0148100	LOC_Os10g05750	flower	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	Here we report a novel flower-specific PRP designated OsPRP3 from rice
OsPRP3	Os10g0148100	LOC_Os10g05750	flower	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	Expression analysis showed that the OsPRP3 transcript was mainly present in rice flower and accumulated abundantly during the late stage of the flower development
OsPRP3	Os10g0148100	LOC_Os10g05750	flower	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	Microscopic analysis of the RNAi mutant flower revealed that blocking OsPRP3 function caused significant defects in floral organogenesis
OsPRP3	Os10g0148100	LOC_Os10g05750	flower	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance
OsPRP3	Os10g0148100	LOC_Os10g05750	floral	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	Microscopic analysis of the RNAi mutant flower revealed that blocking OsPRP3 function caused significant defects in floral organogenesis
OsPRP3	Os10g0148100	LOC_Os10g05750	floral	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	Taken together, the results suggested that OsPRP3 is a cell wall protein, playing a crucial role in determining extracellular matrix structure of floral organs
OsPRP3	Os10g0148100	LOC_Os10g05750	floral	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance
OsPRP3	Os10g0148100	LOC_Os10g05750	cold tolerance	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance	Our overexpression plants showed a significant increase in cold tolerance than the WT plants which is conferred by the accumulation of OsPRP3 protein during cold treatment
OsPRR1	Os02g0618200	LOC_Os02g40510	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Flowering genes downstream of OsPRR1 such as OsGI and Hd1 were down regulated in the A654 mutant
OsPRR1	Os02g0618200	LOC_Os02g40510	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	In addition, OsPIL13 and OsPIL15 colocalize with OsPRR1, an ortholog of the Arabidopsis APRR1 gene that controls photoperiodic flowering response through clock function
OsPRR1	Os02g0618200	LOC_Os02g40510	flower	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15	Together, these results suggest that overexpression of OsLF might repress expression of OsGI and Hd1 by competing with OsPRR1 in interacting with OsPIL13 and OsPIL15 and thus induce late flowering
OsPRR95	Os09g0532400	LOC_Os09g36220	homeostasis	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.
OsPRR95	Os09g0532400	LOC_Os09g36220	transporter	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	 Here, we report two central oscillator genes of circadian clock, OsPRR95 and OsPRR59 in rice, which function as transcriptional repressors to negatively regulate the rhythmic expression of OsMGT3 encoding a chloroplast-localized Mg(2+) transporter
OsPRR95	Os09g0532400	LOC_Os09g36220	sugar	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	 Furthermore, sugar triggers the increase of superoxide, which may act as a feedback signal to positively regulate the expression of OsPRR95 and OsPRR59
OsPRR95	Os09g0532400	LOC_Os09g36220	transcriptional repressor	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	 Here, we report two central oscillator genes of circadian clock, OsPRR95 and OsPRR59 in rice, which function as transcriptional repressors to negatively regulate the rhythmic expression of OsMGT3 encoding a chloroplast-localized Mg(2+) transporter
OsPRR95	Os09g0532400	LOC_Os09g36220	magnesium	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.
OsPRR95	Os09g0532400	LOC_Os09g36220	ABA	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 We also found that OsPRR95 binds to the ABA receptor gene REGULATORY COMPONENTS OF ABA RECEPTORS10 (OsRCAR10) DNA and inhibits its expression
OsPRR95	Os09g0532400	LOC_Os09g36220	ABA	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 Genetic analysis showed OsRCAR10 acts downstream of OsPRR95 in mediating ABA responses
OsPRR95	Os09g0532400	LOC_Os09g36220	ABA	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 In addition, the induction of OsPRR95 by ABA partly required a functional OsRCAR10, and the ABA responsive element (ABRE)-binding factor ABSCISIC ACID INSENSITIVE5 (OsABI5) bound directly to the promoter of OsPRR95 and activated its expression, thus establishing a regulatory feedback loop between OsPRR95, OsRCAR10 and OsABI5
OsPRR95	Os09g0532400	LOC_Os09g36220	abscisic acid	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 In addition, the induction of OsPRR95 by ABA partly required a functional OsRCAR10, and the ABA responsive element (ABRE)-binding factor ABSCISIC ACID INSENSITIVE5 (OsABI5) bound directly to the promoter of OsPRR95 and activated its expression, thus establishing a regulatory feedback loop between OsPRR95, OsRCAR10 and OsABI5
OsPRR95	Os09g0532400	LOC_Os09g36220	 ABA 	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 We also found that OsPRR95 binds to the ABA receptor gene REGULATORY COMPONENTS OF ABA RECEPTORS10 (OsRCAR10) DNA and inhibits its expression
OsPRR95	Os09g0532400	LOC_Os09g36220	 ABA 	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 Genetic analysis showed OsRCAR10 acts downstream of OsPRR95 in mediating ABA responses
OsPRR95	Os09g0532400	LOC_Os09g36220	 ABA 	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	 In addition, the induction of OsPRR95 by ABA partly required a functional OsRCAR10, and the ABA responsive element (ABRE)-binding factor ABSCISIC ACID INSENSITIVE5 (OsABI5) bound directly to the promoter of OsPRR95 and activated its expression, thus establishing a regulatory feedback loop between OsPRR95, OsRCAR10 and OsABI5
OsPrx30	Os02g0240100	LOC_Os02g14430	transcription factor	The Class III Peroxidase gene OsPrx30, Transcriptionally Modulated by the AT-hook Protein OsATH1, Mediates Rice Bacterial Blight-induced ROS Accumulation	Furthermore, we identified an AT-hook transcription factor, OsATH1, that specifically bound to the OsPrx30 promoter
OsPrx30	Os02g0240100	LOC_Os02g14430	xoo	The Class III Peroxidase gene OsPrx30, Transcriptionally Modulated by the AT-hook Protein OsATH1, Mediates Rice Bacterial Blight-induced ROS Accumulation	Overexpression of OsPrx30 enhanced the plant's susceptibility to Xoo by maintaining a high level of peroxidase (POD) activity and reducing the content of H2 O2 , while depletion of OsPrx30 had the opposite effects
OsPS1-F	Os03g0778100	LOC_Os03g56670	growth	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.
OsPS1-F	Os03g0778100	LOC_Os03g56670	growth	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	Our results illustrate that OsPS1-F plays an important role in regulating proper growth and development of rice plants
OsPS1-F	Os03g0778100	LOC_Os03g56670	development	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.
OsPS1-F	Os03g0778100	LOC_Os03g56670	development	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	Our results illustrate that OsPS1-F plays an important role in regulating proper growth and development of rice plants
OsPS1-F	Os03g0778100	LOC_Os03g56670	grain	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	Ds insertion in rice OsPS1-F gene results in semi-dwarf plants with reduced tiller number and grain yield, while genetic complementation with OsPS1-F rescued the mutant phenotype
OsPS1-F	Os03g0778100	LOC_Os03g56670	tiller	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	Ds insertion in rice OsPS1-F gene results in semi-dwarf plants with reduced tiller number and grain yield, while genetic complementation with OsPS1-F rescued the mutant phenotype
OsPS1-F	Os03g0778100	LOC_Os03g56670	grain yield	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	Ds insertion in rice OsPS1-F gene results in semi-dwarf plants with reduced tiller number and grain yield, while genetic complementation with OsPS1-F rescued the mutant phenotype
OsPS1-F	Os03g0778100	LOC_Os03g56670	tiller number	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	Ds insertion in rice OsPS1-F gene results in semi-dwarf plants with reduced tiller number and grain yield, while genetic complementation with OsPS1-F rescued the mutant phenotype
OsPS1-F	Os03g0778100	LOC_Os03g56670	photosystem	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	Here, we report the characterization of OsPS1-F (encoding Oryza sativa PHOTOSYSTEM 1-F subunit) using a single copy Ds insertion rice mutant line
OsPSK	Os06g0633300	LOC_Os06g42680	seedling	Oryza sativa PSK gene encodes a precursor of phytosulfokine-alpha , a sulfated peptide growth factor found in plants	Although PSK-α molecules have never been identified in any intact plant, reverse transcription–PCR analysis demonstrated that OsPSK is expressed in rice seedlings, indicating that PSK-α may be important for plant cell proliferation both in vitro and in vivo
OsPSK	Os06g0633300	LOC_Os06g42680	growth	Molecular cloning and characterization of OsPSK, a gene encoding a precursor for phytosulfokine-alpha, required for rice cell proliferation	We previously characterized an OsPSK cDNA encoding a precursor of phytosulfokine-alpha (PSK-alpha), a peptide plant growth factor
OsPSK	Os06g0633300	LOC_Os06g42680	auxin	Molecular cloning and characterization of OsPSK, a gene encoding a precursor for phytosulfokine-alpha, required for rice cell proliferation	Northern blot analyses suggest that the expression of OsPSK is reinforced by auxin and cytokinin
OsPSK	Os06g0633300	LOC_Os06g42680	cytokinin	Molecular cloning and characterization of OsPSK, a gene encoding a precursor for phytosulfokine-alpha, required for rice cell proliferation	Northern blot analyses suggest that the expression of OsPSK is reinforced by auxin and cytokinin
OsPSKR1	Os02g0629400	LOC_Os02g41890	resistance	Identification of the phytosulfokine receptor 1 (OsPSKR1) confers resistance to bacterial leaf streak in rice.	OsPSKR1 overexpression (OE) lines had greater resistance to RS105 than the wild type
OsPSKR1	Os02g0629400	LOC_Os02g41890	resistance	Identification of the phytosulfokine receptor 1 (OsPSKR1) confers resistance to bacterial leaf streak in rice.	Overall, OsPSKR1 functions as a candidate PSK receptor and regulates resistance to Xoc by activating the expression of pathogenesis-related genes involved in the SA pathway in rice
OsPSKR1	Os02g0629400	LOC_Os02g41890	sa	Identification of the phytosulfokine receptor 1 (OsPSKR1) confers resistance to bacterial leaf streak in rice.	Overall, OsPSKR1 functions as a candidate PSK receptor and regulates resistance to Xoc by activating the expression of pathogenesis-related genes involved in the SA pathway in rice
OsPSKR1	Os02g0629400	LOC_Os02g41890	SA	Identification of the phytosulfokine receptor 1 (OsPSKR1) confers resistance to bacterial leaf streak in rice.	Overall, OsPSKR1 functions as a candidate PSK receptor and regulates resistance to Xoc by activating the expression of pathogenesis-related genes involved in the SA pathway in rice
OsPSKR15	Os07g0107800	LOC_Os07g01710	growth	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Ectopic expression of OsPSKR15 in Arabidopsis thaliana increased the sensitivity to ABA during germination, growth and stomatal closure
OsPSKR15	Os07g0107800	LOC_Os07g01710	drought	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Furthermore, the constitutive expression of OsPSKR15 enhanced drought tolerance by reducing the transpirational water loss in Arabidopsis
OsPSKR15	Os07g0107800	LOC_Os07g01710	tolerance	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Furthermore, the constitutive expression of OsPSKR15 enhanced drought tolerance by reducing the transpirational water loss in Arabidopsis
OsPSKR15	Os07g0107800	LOC_Os07g01710	abiotic stress	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Altogether, these results reveal an important role of OsPSKR15 in plant response towards abiotic stress in an ABA-dependent manner
OsPSKR15	Os07g0107800	LOC_Os07g01710	ABA	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Ectopic expression of OsPSKR15 in Arabidopsis thaliana increased the sensitivity to ABA during germination, growth and stomatal closure
OsPSKR15	Os07g0107800	LOC_Os07g01710	ABA	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	OsPSKR15 also regulated reactive oxygen species (ROS)-mediated ABA signaling in guard cells, thereby governing stomatal closure
OsPSKR15	Os07g0107800	LOC_Os07g01710	drought tolerance	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Furthermore, the constitutive expression of OsPSKR15 enhanced drought tolerance by reducing the transpirational water loss in Arabidopsis
OsPSKR15	Os07g0107800	LOC_Os07g01710	stress	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Altogether, these results reveal an important role of OsPSKR15 in plant response towards abiotic stress in an ABA-dependent manner
OsPSKR15	Os07g0107800	LOC_Os07g01710	nucleus	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	We also reported that OsPSKR15 directly interacts with AtPYL9 and its orthologue OsPYL11 of rice through its kinase domain in the plasma membrane and nucleus
OsPSKR15	Os07g0107800	LOC_Os07g01710	biotic stress	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Altogether, these results reveal an important role of OsPSKR15 in plant response towards abiotic stress in an ABA-dependent manner
OsPSKR15	Os07g0107800	LOC_Os07g01710	stomatal	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Ectopic expression of OsPSKR15 in Arabidopsis thaliana increased the sensitivity to ABA during germination, growth and stomatal closure
OsPSKR15	Os07g0107800	LOC_Os07g01710	stomatal	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	OsPSKR15 also regulated reactive oxygen species (ROS)-mediated ABA signaling in guard cells, thereby governing stomatal closure
OsPSKR15	Os07g0107800	LOC_Os07g01710	ABA	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	We demonstrated OsPSKR15 is a positive regulator in plant response to ABA
OsPSKR15	Os07g0107800	LOC_Os07g01710	ABA	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Ectopic expression of OsPSKR15 in Arabidopsis thaliana increased the sensitivity to ABA during germination, growth and stomatal closure
OsPSKR15	Os07g0107800	LOC_Os07g01710	ABA	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	OsPSKR15 also regulated reactive oxygen species (ROS)-mediated ABA signaling in guard cells, thereby governing stomatal closure
OsPSKR15	Os07g0107800	LOC_Os07g01710	Kinase	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	We also reported that OsPSKR15 directly interacts with AtPYL9 and its orthologue OsPYL11 of rice through its kinase domain in the plasma membrane and nucleus
OsPSKR15	Os07g0107800	LOC_Os07g01710	kinase	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	We also reported that OsPSKR15 directly interacts with AtPYL9 and its orthologue OsPYL11 of rice through its kinase domain in the plasma membrane and nucleus
OsPSKR15	Os07g0107800	LOC_Os07g01710	plasma membrane	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	We also reported that OsPSKR15 directly interacts with AtPYL9 and its orthologue OsPYL11 of rice through its kinase domain in the plasma membrane and nucleus
OsPSKR15	Os07g0107800	LOC_Os07g01710	reactive oxygen species	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	OsPSKR15 also regulated reactive oxygen species (ROS)-mediated ABA signaling in guard cells, thereby governing stomatal closure
OsPSKR15	Os07g0107800	LOC_Os07g01710	water loss	OsPSKR15, a phytosulfokine receptor from rice enhances ABA response and drought stress tolerance.	Furthermore, the constitutive expression of OsPSKR15 enhanced drought tolerance by reducing the transpirational water loss in Arabidopsis
OsPSY|OsPSY3	Os09g0555500	LOC_Os09g38320	root	A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes	Rather, OsPSY3 transcripts are up-regulated during increased abscisic acid (ABA) formation upon salt treatment and drought, especially in roots
OsPSY|OsPSY3	Os09g0555500	LOC_Os09g38320	drought	A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes	Rather, OsPSY3 transcripts are up-regulated during increased abscisic acid (ABA) formation upon salt treatment and drought, especially in roots
OsPSY|OsPSY3	Os09g0555500	LOC_Os09g38320	salt	A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes	Rather, OsPSY3 transcripts are up-regulated during increased abscisic acid (ABA) formation upon salt treatment and drought, especially in roots
OspTAC2	Os03g0824100	LOC_Os03g60910	chloroplast	OspTAC2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.	OspTAC2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.
OspTAC2	Os03g0824100	LOC_Os03g60910	chloroplast	OspTAC2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.	Sequence and transcription analyses showed that OspTAC2 encodes a putative chloroplast protein consisting of 10 pentratricopeptide repeat (PPR) domains and a C-terminal small MutS-related (SMR) domain
OspTAC2	Os03g0824100	LOC_Os03g60910	chloroplast	OspTAC2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.	Transmission electron microscopy revealed that the chloroplast of the osptac2 mutant lacks an organized thylakoid membrane
OspTAC2	Os03g0824100	LOC_Os03g60910	chloroplast	OspTAC2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.	These results suggest that OspTAC2 plays a critical role in chloroplast development and indicate that the molecular function of the OspTAC2 gene is conserved in rice and Arabidopsis
OspTAC2	Os03g0824100	LOC_Os03g60910	development	OspTAC2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.	These results suggest that OspTAC2 plays a critical role in chloroplast development and indicate that the molecular function of the OspTAC2 gene is conserved in rice and Arabidopsis
OspTAC2	Os03g0824100	LOC_Os03g60910	chloroplast development	OspTAC2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.	OspTAC2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.
OspTAC2	Os03g0824100	LOC_Os03g60910	chloroplast development	OspTAC2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.	These results suggest that OspTAC2 plays a critical role in chloroplast development and indicate that the molecular function of the OspTAC2 gene is conserved in rice and Arabidopsis
OsPTB1	Os01g0867800	LOC_Os01g64770	young panicles	Translational repression of FZP mediated by CU-rich element/OsPTB interactions modulates panicle development in rice.	 Both OsPTB1 and OsPTB2 were highly expressed in young panicles
OsPTB1	Os01g0867800	LOC_Os01g64770	panicle development	Translational repression of FZP mediated by CU-rich element/OsPTB interactions modulates panicle development in rice	Translational repression of FZP mediated by CU-rich element/OsPTB interactions modulates panicle development in rice
OsPTB2	Os05g0437300	LOC_Os05g36120	young panicles	Translational repression of FZP mediated by CU-rich element/OsPTB interactions modulates panicle development in rice.	 Both OsPTB1 and OsPTB2 were highly expressed in young panicles
OsPTB2	Os05g0437300	LOC_Os05g36120	panicle development	Translational repression of FZP mediated by CU-rich element/OsPTB interactions modulates panicle development in rice	Translational repression of FZP mediated by CU-rich element/OsPTB interactions modulates panicle development in rice
OsPTD1	Os05g0588200	LOC_Os05g51060	meiosis	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.	Our results suggest that OsSHOC1 and OsPTD1 are essential for rice fertilization and CO formation, possibly by stabilizing the recombinant intermediates during meiosis
OsPTD1	Os05g0588200	LOC_Os05g51060	fertility	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.	Further investigations showed that OsSHOC1 physically interacted with OsPTD1 and that the latter was also required for normal CO formation and plant fertility
OsPTD1	Os05g0588200	LOC_Os05g51060	meiotic	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.	In this study, we report the isolation of a meiotic gene, OsSHOC1, and the identification of its partner, OsPTD1
OsPTD1	Os05g0588200	LOC_Os05g51060	crossover	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.
OsPTF1	Os06g0193400	LOC_Os06g09370	pi	OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice	The expression of OsPTF1 is Pi starvation induced in roots while constitutively expressed in shoots, as shown by northern-blot analysis
OsPTF1	Os06g0193400	LOC_Os06g09370	pi	OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice	Overexpression of OsPTF1 enhanced tolerance to Pi starvation in transgenic rice
OsPTF1	Os06g0193400	LOC_Os06g09370	transcription factor	OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice	OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice
OsPTF1	Os06g0193400	LOC_Os06g09370	phosphate	OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice	OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice
OsPTF1	Os06g0193400	LOC_Os06g09370	root	OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice	The expression of OsPTF1 is Pi starvation induced in roots while constitutively expressed in shoots, as shown by northern-blot analysis
OsPTF1	Os06g0193400	LOC_Os06g09370	shoot	OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice	The expression of OsPTF1 is Pi starvation induced in roots while constitutively expressed in shoots, as shown by northern-blot analysis
OsPti1a	Os05g0135800	LOC_Os05g04520	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	The AGC kinase OsOxi1, which has been isolated as an interactor with OsPti1a, positively regulates basal disease resistance in rice
OsPti1a	Os05g0135800	LOC_Os05g04520	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	We show here that OsPdk1 acts upstream of the OsOxi1-OsPti1a signal cascade in disease resistance in rice
OsPti1a	Os05g0135800	LOC_Os05g04520	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Taken together, these results suggest that OsPdk1 positively regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice
OsPti1a	Os05g0135800	LOC_Os05g04520	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice
OsPti1a	Os05g0135800	LOC_Os05g04520	defense	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	To investigate the molecular function of OsPti1a in defense responses, we searched for components interacting with OsPti1a using a yeast two-hybrid system
OsPti1a	Os05g0135800	LOC_Os05g04520	defense	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	Taken together, our data suggest that OsOxi1 positively regulates defense responses through the phosphorylation of OsPti1a, causing the release from an OsPti1a-dependent inhibition of the responses
OsPti1a	Os05g0135800	LOC_Os05g04520	disease	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	OsOxi1 phosphorylates Thr-233 of OsPti1a and a point mutation of Thr-233 enhanced disease susceptibility to a bacterial pathogen Xanthomonas oryzae pv
OsPti1a	Os05g0135800	LOC_Os05g04520	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	The AGC kinase OsOxi1, which has been isolated as an interactor with OsPti1a, positively regulates basal disease resistance in rice
OsPti1a	Os05g0135800	LOC_Os05g04520	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	We show here that OsPdk1 acts upstream of the OsOxi1-OsPti1a signal cascade in disease resistance in rice
OsPti1a	Os05g0135800	LOC_Os05g04520	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Taken together, these results suggest that OsPdk1 positively regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice
OsPti1a	Os05g0135800	LOC_Os05g04520	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice
OsPti1a	Os05g0135800	LOC_Os05g04520	defense response	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	To investigate the molecular function of OsPti1a in defense responses, we searched for components interacting with OsPti1a using a yeast two-hybrid system
OsPti1a	Os05g0135800	LOC_Os05g04520	defense response	AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation	Taken together, our data suggest that OsOxi1 positively regulates defense responses through the phosphorylation of OsPti1a, causing the release from an OsPti1a-dependent inhibition of the responses
OsPti1a	Os05g0135800	LOC_Os05g04520	defense	Rice immune regulator, OsPti1a, is specifically phosphorylated at the plasma membrane.	Phosphorylation of a conserved threonine in OsPti1a is necessary to activate defense responses; however, the regulatory mechanism of OsPti1a-mediated immune responses is still obscure
OsPti1a	Os05g0135800	LOC_Os05g04520	defense response	Rice immune regulator, OsPti1a, is specifically phosphorylated at the plasma membrane.	Phosphorylation of a conserved threonine in OsPti1a is necessary to activate defense responses; however, the regulatory mechanism of OsPti1a-mediated immune responses is still obscure
OsPti1a	Os05g0135800	LOC_Os05g04520	plasma membrane	Rice immune regulator, OsPti1a, is specifically phosphorylated at the plasma membrane.	Recently, we revealed that OsPti1a forms protein complex(es) at the plasma membrane and this localization is required for its function
OsPti1a	Os05g0135800	LOC_Os05g04520	plasma membrane	Rice immune regulator, OsPti1a, is specifically phosphorylated at the plasma membrane.	These results suggest that OsPti1a protein is selectively regulated by its phosphorylation after OsPti1a localizes to the plasma membrane
OsPti1a	Os05g0135800	LOC_Os05g04520	immune response	Rice immune regulator, OsPti1a, is specifically phosphorylated at the plasma membrane.	OsPti1a (Pto-interacting protein 1a) has important roles in the regulation of immune responses in rice
OsPti1a	Os05g0135800	LOC_Os05g04520	immune response	Rice immune regulator, OsPti1a, is specifically phosphorylated at the plasma membrane.	Phosphorylation of a conserved threonine in OsPti1a is necessary to activate defense responses; however, the regulatory mechanism of OsPti1a-mediated immune responses is still obscure
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	growth	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	growth	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.	These data suggest that over-expression of the OsPTR6 gene could increase rice growth through increasing ammonium transporter expression and glutamine synthetase activity (GSA), but decreases nitrogen use efficiency under conditions of high ammonium supply
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	nitrogen	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	nitrogen	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.	These data suggest that over-expression of the OsPTR6 gene could increase rice growth through increasing ammonium transporter expression and glutamine synthetase activity (GSA), but decreases nitrogen use efficiency under conditions of high ammonium supply
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	transporter	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.	These data suggest that over-expression of the OsPTR6 gene could increase rice growth through increasing ammonium transporter expression and glutamine synthetase activity (GSA), but decreases nitrogen use efficiency under conditions of high ammonium supply
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	plant growth	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	nitrogen	The Rice Peptide Transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and Grain Yield.	The Rice Peptide Transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and Grain Yield.
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	grain	The Rice Peptide Transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and Grain Yield.	The Rice Peptide Transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and Grain Yield.
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	grain yield	The Rice Peptide Transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and Grain Yield.	The Rice Peptide Transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and Grain Yield.
OsPTR6|PTR6|OsNPF7.3	Os04g0597800	LOC_Os04g50950	transporter	The Rice Peptide Transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and Grain Yield.	The Rice Peptide Transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and Grain Yield.
OsPTR7|OsNPF8.1|OsNPF8.10	Os01g0142800	LOC_Os01g04950	root	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	Knockout or knockdown mutants of OsPTR7 had significantly decreased root to shoot translocation of DMA compared with wild-type plants and accumulated less As in the brown rice
OsPTR7|OsNPF8.1|OsNPF8.10	Os01g0142800	LOC_Os01g04950	shoot	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	Knockout or knockdown mutants of OsPTR7 had significantly decreased root to shoot translocation of DMA compared with wild-type plants and accumulated less As in the brown rice
OsPTR7|OsNPF8.1|OsNPF8.10	Os01g0142800	LOC_Os01g04950	grain	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	Our study demonstrates that OsPTR7 is involved in the long-distance translocation of DMA and contributes to the accumulation of DMA in rice grain
OsPTR7|OsNPF8.1|OsNPF8.10	Os01g0142800	LOC_Os01g04950	seedling	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	Quantitative real-time PCR analysis showed that OsPTR7 was more highly expressed in the shoots than in the roots at the seedling stage
OsPTR7|OsNPF8.1|OsNPF8.10	Os01g0142800	LOC_Os01g04950	transporter	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.
OsPTR7|OsNPF8.1|OsNPF8.10	Os01g0142800	LOC_Os01g04950	plasma membrane	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	Transient expression of the OsPTR7-green fluorescent protein (GFP) in tobacco protoplasts showed that OsPTR7 was localized in the cell plasma membrane
OsPTR7|OsNPF8.1|OsNPF8.10	Os01g0142800	LOC_Os01g04950	grain-filling	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	At the flowering and grain-filling stage, the OsPTR7 transcript was abundant in the leaves, node I and roots
OsPTR7|OsNPF8.1|OsNPF8.10	Os01g0142800	LOC_Os01g04950	node	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	At the flowering and grain-filling stage, the OsPTR7 transcript was abundant in the leaves, node I and roots
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	growth	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Here, we report the influence of altered OsPTR9 expression on nitrogen utilization efficiency, growth, and grain yield
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	growth	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	breeding	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	These results suggest that OsPTR9 might hold potential for improving nitrogen utilization efficiency and grain yield in rice breeding
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	yield	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Here, we report the influence of altered OsPTR9 expression on nitrogen utilization efficiency, growth, and grain yield
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	yield	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Elevated expression of OsPTR9 in transgenic rice plants resulted in enhanced ammonium uptake, promotion of lateral root formation and increased grain yield
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	yield	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	These results suggest that OsPTR9 might hold potential for improving nitrogen utilization efficiency and grain yield in rice breeding
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	yield	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	root	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Elevated expression of OsPTR9 in transgenic rice plants resulted in enhanced ammonium uptake, promotion of lateral root formation and increased grain yield
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	nitrogen	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Here, we report the influence of altered OsPTR9 expression on nitrogen utilization efficiency, growth, and grain yield
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	nitrogen	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	OsPTR9 expression is regulated by exogenous nitrogen and by the day-night cycle
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	nitrogen	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	These results suggest that OsPTR9 might hold potential for improving nitrogen utilization efficiency and grain yield in rice breeding
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	nitrogen	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	grain	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Here, we report the influence of altered OsPTR9 expression on nitrogen utilization efficiency, growth, and grain yield
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	grain	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Elevated expression of OsPTR9 in transgenic rice plants resulted in enhanced ammonium uptake, promotion of lateral root formation and increased grain yield
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	grain	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	These results suggest that OsPTR9 might hold potential for improving nitrogen utilization efficiency and grain yield in rice breeding
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	grain	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	grain yield	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Here, we report the influence of altered OsPTR9 expression on nitrogen utilization efficiency, growth, and grain yield
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	grain yield	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Elevated expression of OsPTR9 in transgenic rice plants resulted in enhanced ammonium uptake, promotion of lateral root formation and increased grain yield
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	grain yield	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	These results suggest that OsPTR9 might hold potential for improving nitrogen utilization efficiency and grain yield in rice breeding
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	grain yield	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice
OsPTR9|OsNPF8.20	Os06g0706400	LOC_Os06g49250	lateral root	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice	Elevated expression of OsPTR9 in transgenic rice plants resulted in enhanced ammonium uptake, promotion of lateral root formation and increased grain yield
OsPUB15	Os08g0110500	LOC_Os08g01900	oxidative	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment
OsPUB15	Os08g0110500	LOC_Os08g01900	salt	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment	OsPUB15 transcript levels were increased upon H2O2, salt and drought stresses; plants overexpressing the gene grew better than the wild type under high salinity
OsPUB15	Os08g0110500	LOC_Os08g01900	growth	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment	A T-DNA insertional mutation in OsPUB15 caused severe growth retardation and a seedling-lethal phenotype
OsPUB15	Os08g0110500	LOC_Os08g01900	salinity	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment	OsPUB15 transcript levels were increased upon H2O2, salt and drought stresses; plants overexpressing the gene grew better than the wild type under high salinity
OsPUB15	Os08g0110500	LOC_Os08g01900	drought	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment	OsPUB15 transcript levels were increased upon H2O2, salt and drought stresses; plants overexpressing the gene grew better than the wild type under high salinity
OsPUB15	Os08g0110500	LOC_Os08g01900	seedling	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment	A T-DNA insertional mutation in OsPUB15 caused severe growth retardation and a seedling-lethal phenotype
OsPUB15	Os08g0110500	LOC_Os08g01900	seedling	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment
OsPUB15	Os08g0110500	LOC_Os08g01900	resistance	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	Transgenic rice plants over-expressing OsPUB15 at early stage displayed cell death lesions spontaneously in association with a constitutive activation of plant basal defense responses, including excessive accumulation of hydrogen peroxide, up-regulated expression of pathogenesis-related genes and enhanced resistance to blast strains
OsPUB15	Os08g0110500	LOC_Os08g01900	resistance	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	These results reveal that the E3 ligase OsPUB15 interacts directly with the receptor-like kinase PID2 and regulates plant cell death and blast disease resistance
OsPUB15	Os08g0110500	LOC_Os08g01900	defense	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	Transgenic rice plants over-expressing OsPUB15 at early stage displayed cell death lesions spontaneously in association with a constitutive activation of plant basal defense responses, including excessive accumulation of hydrogen peroxide, up-regulated expression of pathogenesis-related genes and enhanced resistance to blast strains
OsPUB15	Os08g0110500	LOC_Os08g01900	defense response	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	Transgenic rice plants over-expressing OsPUB15 at early stage displayed cell death lesions spontaneously in association with a constitutive activation of plant basal defense responses, including excessive accumulation of hydrogen peroxide, up-regulated expression of pathogenesis-related genes and enhanced resistance to blast strains
OsPUB15	Os08g0110500	LOC_Os08g01900	disease	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	These results reveal that the E3 ligase OsPUB15 interacts directly with the receptor-like kinase PID2 and regulates plant cell death and blast disease resistance
OsPUB15	Os08g0110500	LOC_Os08g01900	blast	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	Transgenic rice plants over-expressing OsPUB15 at early stage displayed cell death lesions spontaneously in association with a constitutive activation of plant basal defense responses, including excessive accumulation of hydrogen peroxide, up-regulated expression of pathogenesis-related genes and enhanced resistance to blast strains
OsPUB15	Os08g0110500	LOC_Os08g01900	blast	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	These results reveal that the E3 ligase OsPUB15 interacts directly with the receptor-like kinase PID2 and regulates plant cell death and blast disease resistance
OsPUB15	Os08g0110500	LOC_Os08g01900	disease resistance	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	These results reveal that the E3 ligase OsPUB15 interacts directly with the receptor-like kinase PID2 and regulates plant cell death and blast disease resistance
OsPUB15	Os08g0110500	LOC_Os08g01900	cell death	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.
OsPUB15	Os08g0110500	LOC_Os08g01900	cell death	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	Transgenic rice plants over-expressing OsPUB15 at early stage displayed cell death lesions spontaneously in association with a constitutive activation of plant basal defense responses, including excessive accumulation of hydrogen peroxide, up-regulated expression of pathogenesis-related genes and enhanced resistance to blast strains
OsPUB15	Os08g0110500	LOC_Os08g01900	cell death	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	These results reveal that the E3 ligase OsPUB15 interacts directly with the receptor-like kinase PID2 and regulates plant cell death and blast disease resistance
OsPUB15	Os08g0110500	LOC_Os08g01900	blast disease	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	These results reveal that the E3 ligase OsPUB15 interacts directly with the receptor-like kinase PID2 and regulates plant cell death and blast disease resistance
OsPUB15	Os08g0110500	LOC_Os08g01900	Kinase	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.
OsPUB15	Os08g0110500	LOC_Os08g01900	Kinase	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	We found that OsPUB15 physically interacted with the kinase domain of PID2 (PID2K) in vitro and in vivo and the ARM repeat domain of OsPUB15 was essential for the interaction
OsPUB15	Os08g0110500	LOC_Os08g01900	Kinase	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	In vitro biochemical assays indicated that PID2K possessed kinase activity and was able to phosphorylate OsPUB15
OsPUB15	Os08g0110500	LOC_Os08g01900	Kinase	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	These results reveal that the E3 ligase OsPUB15 interacts directly with the receptor-like kinase PID2 and regulates plant cell death and blast disease resistance
OsPUB15	Os08g0110500	LOC_Os08g01900	innate immunity	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.
OsPUB2	Os05g0476700	LOC_Os05g39930	temperature	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).
OsPUB2	Os05g0476700	LOC_Os05g39930	cold stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	In this study, we performed functional analyses of two homologous OsPUB2 and OsPUB3 in response to cold stress (4°C)
OsPUB2	Os05g0476700	LOC_Os05g39930	cold stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	These results suggested that OsPUB2 and OsPUB3 function coordinately in response to cold stress
OsPUB2	Os05g0476700	LOC_Os05g39930	cold stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Taken together, these results suggested that the two homologous rice U-box E3 Ub ligases OsPUB2 and OsPUB3 are positive regulators of the response to cold stress
OsPUB2	Os05g0476700	LOC_Os05g39930	stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).
OsPUB2	Os05g0476700	LOC_Os05g39930	stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	In this study, we performed functional analyses of two homologous OsPUB2 and OsPUB3 in response to cold stress (4°C)
OsPUB2	Os05g0476700	LOC_Os05g39930	stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	These results suggested that OsPUB2 and OsPUB3 function coordinately in response to cold stress
OsPUB2	Os05g0476700	LOC_Os05g39930	stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Taken together, these results suggested that the two homologous rice U-box E3 Ub ligases OsPUB2 and OsPUB3 are positive regulators of the response to cold stress
OsPUB2	Os05g0476700	LOC_Os05g39930	Ubiquitin	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).
OsPUB2	Os05g0476700	LOC_Os05g39930	stress response	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).
OsPUB24	Os03g0657100	LOC_Os03g45420	seedling	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	The ospub24 T-DNA knock-out mutant and Ubi:RNAi-OsPUB24 knock-down rice plants displayed enhanced seedling growth, increased lamina joint bending, and hypersensitivity to brassinolide (BL)
OsPUB24	Os03g0657100	LOC_Os03g45420	BR	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.
OsPUB24	Os03g0657100	LOC_Os03g45420	BR	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	Here, we report that a rice U-box E3 ubiquitin (Ub) ligase OsPUB24 acts as a negative regulator in the BR signaling pathway via 26S proteasome-dependent degradation of OsBZR1
OsPUB24	Os03g0657100	LOC_Os03g45420	BR	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	Our findings suggest that OsPUB24 participates in OsBZR1 turnover and the regulatory networks of OsPUB24, OsSK22, and OsBZR1 are crucial for fine-tuning the BR response in rice
OsPUB24	Os03g0657100	LOC_Os03g45420	Kinase	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	In addition, the stability of OsPUB24 was downregulated by BL and bikinin, an inhibitor of OsSK22 (Oryza sativa Shaggy/GSK3-like kinase 22)
OsPUB24	Os03g0657100	LOC_Os03g45420	protein kinase	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	OsSK22, the homolog of Arabidopsis BIN2 (BRASSINOSTEROID INSENSITIVE2) protein kinase, phosphorylated OsPUB24 and elevated the cellular stability of OsPUB24
OsPUB24	Os03g0657100	LOC_Os03g45420	BR signaling	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	Here, we report that a rice U-box E3 ubiquitin (Ub) ligase OsPUB24 acts as a negative regulator in the BR signaling pathway via 26S proteasome-dependent degradation of OsBZR1
OsPUB24	Os03g0657100	LOC_Os03g45420	lamina	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	The ospub24 T-DNA knock-out mutant and Ubi:RNAi-OsPUB24 knock-down rice plants displayed enhanced seedling growth, increased lamina joint bending, and hypersensitivity to brassinolide (BL)
OsPUB24	Os03g0657100	LOC_Os03g45420	Ubiquitin	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	Here, we report that a rice U-box E3 ubiquitin (Ub) ligase OsPUB24 acts as a negative regulator in the BR signaling pathway via 26S proteasome-dependent degradation of OsBZR1
OsPUB24	Os03g0657100	LOC_Os03g45420	lamina joint	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	The ospub24 T-DNA knock-out mutant and Ubi:RNAi-OsPUB24 knock-down rice plants displayed enhanced seedling growth, increased lamina joint bending, and hypersensitivity to brassinolide (BL)
OsPUB3	Os01g0823900	LOC_Os01g60860	temperature	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).
OsPUB3	Os01g0823900	LOC_Os01g60860	cold stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	In this study, we performed functional analyses of two homologous OsPUB2 and OsPUB3 in response to cold stress (4°C)
OsPUB3	Os01g0823900	LOC_Os01g60860	cold stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	These results suggested that OsPUB2 and OsPUB3 function coordinately in response to cold stress
OsPUB3	Os01g0823900	LOC_Os01g60860	cold stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Taken together, these results suggested that the two homologous rice U-box E3 Ub ligases OsPUB2 and OsPUB3 are positive regulators of the response to cold stress
OsPUB3	Os01g0823900	LOC_Os01g60860	stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).
OsPUB3	Os01g0823900	LOC_Os01g60860	stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	In this study, we performed functional analyses of two homologous OsPUB2 and OsPUB3 in response to cold stress (4°C)
OsPUB3	Os01g0823900	LOC_Os01g60860	stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	These results suggested that OsPUB2 and OsPUB3 function coordinately in response to cold stress
OsPUB3	Os01g0823900	LOC_Os01g60860	stress	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Taken together, these results suggested that the two homologous rice U-box E3 Ub ligases OsPUB2 and OsPUB3 are positive regulators of the response to cold stress
OsPUB3	Os01g0823900	LOC_Os01g60860	Ubiquitin	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).
OsPUB3	Os01g0823900	LOC_Os01g60860	stress response	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).
OsPUB3	Os01g0823900	LOC_Os01g60860	grain	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.
OsPUB3	Os01g0823900	LOC_Os01g60860	grain	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.	 Their differences on grain weight and size were significant in the background of non-functional gse5, but non-significant in the background of functional GSE5, indicating a genetic interaction between OsPUB3 and GSE5
OsPUB3	Os01g0823900	LOC_Os01g60860	grain	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.	 Cloning of OsPUB3 provides a new gene resource for investigating the regulation of grain weight and size
OsPUB3	Os01g0823900	LOC_Os01g60860	grain weight	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.
OsPUB3	Os01g0823900	LOC_Os01g60860	grain weight	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.	 Their differences on grain weight and size were significant in the background of non-functional gse5, but non-significant in the background of functional GSE5, indicating a genetic interaction between OsPUB3 and GSE5
OsPUB3	Os01g0823900	LOC_Os01g60860	grain weight	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.	 Cloning of OsPUB3 provides a new gene resource for investigating the regulation of grain weight and size
OsPUB3	Os01g0823900	LOC_Os01g60860	Ubiquitin	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.	Control of Grain Weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-Box E3 Ubiquitin Ligase.
OsPUB41	Os03g0240600	LOC_Os03g13740	ja	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	In rice, transient overexpression of OsPUB41 leads to enhanced expression of PR genes and SA as well as JA biosynthetic and response genes
OsPUB41	Os03g0240600	LOC_Os03g13740	ja	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	However, in Arabidopsis, ectopic expression of OsPUB41 results in upregulation of only JA biosynthetic and response genes
OsPUB41	Os03g0240600	LOC_Os03g13740	JA	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	In rice, transient overexpression of OsPUB41 leads to enhanced expression of PR genes and SA as well as JA biosynthetic and response genes
OsPUB41	Os03g0240600	LOC_Os03g13740	JA	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	However, in Arabidopsis, ectopic expression of OsPUB41 results in upregulation of only JA biosynthetic and response genes
OsPUB41	Os03g0240600	LOC_Os03g13740	defense	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	This indicates that the E3 ligase activity of OsPUB41 protein is essential for induction of plant defense responses
OsPUB41	Os03g0240600	LOC_Os03g13740	tolerance	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	Overexpression of OsPUB41 leads to induction of callose deposition, enhanced tolerance to Xoo and Rhizoctonia solani infection in rice and Arabidopsis respectively
OsPUB41	Os03g0240600	LOC_Os03g13740	defense response	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	This indicates that the E3 ligase activity of OsPUB41 protein is essential for induction of plant defense responses
OsPUB41	Os03g0240600	LOC_Os03g13740	immune response	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	Transient overexpression of either of the two biochemically inactive mutants (OsPUB41C40A and OsPUB41V51R) of OsPUB41 in rice and stable transgenics in Arabidopsis ectopically expressing OsPUB41C40A failed to elicit immune responses
OsPUB41	Os03g0240600	LOC_Os03g13740	immune response	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	The results presented here suggest that OsPUB41 is possibly involved in elicitation of CWDE triggered immune responses in rice
OsPUB41	Os03g0240600	LOC_Os03g13740	xoo	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	Overexpression of OsPUB41 leads to induction of callose deposition, enhanced tolerance to Xoo and Rhizoctonia solani infection in rice and Arabidopsis respectively
OsPUB41	Os03g0240600	LOC_Os03g13740	sa	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	In rice, transient overexpression of OsPUB41 leads to enhanced expression of PR genes and SA as well as JA biosynthetic and response genes
OsPUB41	Os03g0240600	LOC_Os03g13740	SA	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	In rice, transient overexpression of OsPUB41 leads to enhanced expression of PR genes and SA as well as JA biosynthetic and response genes
OsPUB41	Os03g0240600	LOC_Os03g13740	drought	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsPUB41	Os03g0240600	LOC_Os03g13740	drought	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsPUB41	Os03g0240600	LOC_Os03g13740	tolerance	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsPUB41	Os03g0240600	LOC_Os03g13740	abiotic stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 expression was specifically induced by dehydration among various abiotic stresses and abscisic acid (ABA) treatments
OsPUB41	Os03g0240600	LOC_Os03g13740	stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsPUB41	Os03g0240600	LOC_Os03g13740	stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsPUB41	Os03g0240600	LOC_Os03g13740	biotic stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 expression was specifically induced by dehydration among various abiotic stresses and abscisic acid (ABA) treatments
OsPUB41	Os03g0240600	LOC_Os03g13740	abscisic acid	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 expression was specifically induced by dehydration among various abiotic stresses and abscisic acid (ABA) treatments
OsPUB41	Os03g0240600	LOC_Os03g13740	chlorophyll content	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsPUB41	Os03g0240600	LOC_Os03g13740	water loss	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsPUB41	Os03g0240600	LOC_Os03g13740	stress response	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress response	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsPUB43	Os02g0548700	LOC_Os02g34410	spikelet	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.
OsPUB43	Os02g0548700	LOC_Os02g34410	spikelet	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 Scanning electron microscopy analysis reveals that OsPUB43 modulates the grain size mainly by inhibiting cell proliferation in the spikelet hull
OsPUB43	Os02g0548700	LOC_Os02g34410	grain	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.
OsPUB43	Os02g0548700	LOC_Os02g34410	grain	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 Phenotypes of large grain are observed in ospub43 mutants, whereas overexpression of OsPUB43 results in short grains
OsPUB43	Os02g0548700	LOC_Os02g34410	grain	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 Scanning electron microscopy analysis reveals that OsPUB43 modulates the grain size mainly by inhibiting cell proliferation in the spikelet hull
OsPUB43	Os02g0548700	LOC_Os02g34410	grain	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 Collectively, our results indicate that OsPUB43 negatively controls the gain size by modulating the expression of BR-responsive genes as well as MADS-box genes that are required for lemma/palea specification, suggesting that OsPUB43 has a potential valuable application in the enlargement of grain size in rice
OsPUB43	Os02g0548700	LOC_Os02g34410	grain length	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.
OsPUB43	Os02g0548700	LOC_Os02g34410	grain size	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 Scanning electron microscopy analysis reveals that OsPUB43 modulates the grain size mainly by inhibiting cell proliferation in the spikelet hull
OsPUB43	Os02g0548700	LOC_Os02g34410	grain size	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 Collectively, our results indicate that OsPUB43 negatively controls the gain size by modulating the expression of BR-responsive genes as well as MADS-box genes that are required for lemma/palea specification, suggesting that OsPUB43 has a potential valuable application in the enlargement of grain size in rice
OsPUB43	Os02g0548700	LOC_Os02g34410	BR	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 The ospub43 mutants display high sensitivity to exogenous BR, while OsPUB43-OE lines are hyposensitive to BR
OsPUB43	Os02g0548700	LOC_Os02g34410	cytoplasm	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 The OsPUB43 protein is localized in the cytoplasm and nucleus
OsPUB43	Os02g0548700	LOC_Os02g34410	nucleus	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 The OsPUB43 protein is localized in the cytoplasm and nucleus
OsPUB43	Os02g0548700	LOC_Os02g34410	cell proliferation	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.
OsPUB43	Os02g0548700	LOC_Os02g34410	cell proliferation	CRISPR-Cas9 Mediated Mutation in OsPUB43 Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	 Scanning electron microscopy analysis reveals that OsPUB43 modulates the grain size mainly by inhibiting cell proliferation in the spikelet hull
OsPUB44	Os05g0439400	LOC_Os05g36360	immunity	Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice	Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice
OsPUB44	Os05g0439400	LOC_Os05g36360	ubiquitin E3 ligase	Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice	Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice
OsPUB44	Os05g0439400	LOC_Os05g36360	immune response	Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice	Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice
OsPUB67	Os10g0552400	LOC_Os10g40490	drought	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.
OsPUB67	Os10g0552400	LOC_Os10g40490	drought	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Over-expression of OsPUB67 improved drought stress tolerance by enhancing the reactive oxygen scavenging ability and stomatal closure
OsPUB67	Os10g0552400	LOC_Os10g40490	drought	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	This interaction on the stomata implied OsPUB67 might function as a heterodimeric ubiquitination complex in response to drought stress
OsPUB67	Os10g0552400	LOC_Os10g40490	drought	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Our findings revealed OsPUB67 mediated a multilayered complex drought stress tolerance mechanism
OsPUB67	Os10g0552400	LOC_Os10g40490	tolerance	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.
OsPUB67	Os10g0552400	LOC_Os10g40490	tolerance	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Over-expression of OsPUB67 improved drought stress tolerance by enhancing the reactive oxygen scavenging ability and stomatal closure
OsPUB67	Os10g0552400	LOC_Os10g40490	tolerance	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Our findings revealed OsPUB67 mediated a multilayered complex drought stress tolerance mechanism
OsPUB67	Os10g0552400	LOC_Os10g40490	abiotic stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	This distribution of expression suggests a significant role for OsPUB67 in a wide range of biological processes and abiotic stress response
OsPUB67	Os10g0552400	LOC_Os10g40490	abiotic stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Comprehensive transcriptome analysis revealed OsPUB67 participated in regulating genes involved in the abiotic stress response and transcriptional regulation in an ABA-dependent manner
OsPUB67	Os10g0552400	LOC_Os10g40490	drought tolerance	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.
OsPUB67	Os10g0552400	LOC_Os10g40490	stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	This distribution of expression suggests a significant role for OsPUB67 in a wide range of biological processes and abiotic stress response
OsPUB67	Os10g0552400	LOC_Os10g40490	stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Over-expression of OsPUB67 improved drought stress tolerance by enhancing the reactive oxygen scavenging ability and stomatal closure
OsPUB67	Os10g0552400	LOC_Os10g40490	stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	This interaction on the stomata implied OsPUB67 might function as a heterodimeric ubiquitination complex in response to drought stress
OsPUB67	Os10g0552400	LOC_Os10g40490	stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Comprehensive transcriptome analysis revealed OsPUB67 participated in regulating genes involved in the abiotic stress response and transcriptional regulation in an ABA-dependent manner
OsPUB67	Os10g0552400	LOC_Os10g40490	stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Our findings revealed OsPUB67 mediated a multilayered complex drought stress tolerance mechanism
OsPUB67	Os10g0552400	LOC_Os10g40490	biotic stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	This distribution of expression suggests a significant role for OsPUB67 in a wide range of biological processes and abiotic stress response
OsPUB67	Os10g0552400	LOC_Os10g40490	biotic stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Comprehensive transcriptome analysis revealed OsPUB67 participated in regulating genes involved in the abiotic stress response and transcriptional regulation in an ABA-dependent manner
OsPUB67	Os10g0552400	LOC_Os10g40490	stomatal	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Over-expression of OsPUB67 improved drought stress tolerance by enhancing the reactive oxygen scavenging ability and stomatal closure
OsPUB67	Os10g0552400	LOC_Os10g40490	Ubiquitin	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.
OsPUB67	Os10g0552400	LOC_Os10g40490	drought stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Over-expression of OsPUB67 improved drought stress tolerance by enhancing the reactive oxygen scavenging ability and stomatal closure
OsPUB67	Os10g0552400	LOC_Os10g40490	drought stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	This interaction on the stomata implied OsPUB67 might function as a heterodimeric ubiquitination complex in response to drought stress
OsPUB67	Os10g0552400	LOC_Os10g40490	drought stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Our findings revealed OsPUB67 mediated a multilayered complex drought stress tolerance mechanism
OsPUB67	Os10g0552400	LOC_Os10g40490	stomata	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	This interaction on the stomata implied OsPUB67 might function as a heterodimeric ubiquitination complex in response to drought stress
OsPUB67	Os10g0552400	LOC_Os10g40490	drought stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Over-expression of OsPUB67 improved drought stress tolerance by enhancing the reactive oxygen scavenging ability and stomatal closure
OsPUB67	Os10g0552400	LOC_Os10g40490	drought stress	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Our findings revealed OsPUB67 mediated a multilayered complex drought stress tolerance mechanism
OsPUB67	Os10g0552400	LOC_Os10g40490	stress response	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	This distribution of expression suggests a significant role for OsPUB67 in a wide range of biological processes and abiotic stress response
OsPUB67	Os10g0552400	LOC_Os10g40490	stress response	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Comprehensive transcriptome analysis revealed OsPUB67 participated in regulating genes involved in the abiotic stress response and transcriptional regulation in an ABA-dependent manner
OsPUB67	Os10g0552400	LOC_Os10g40490	stress tolerance	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Over-expression of OsPUB67 improved drought stress tolerance by enhancing the reactive oxygen scavenging ability and stomatal closure
OsPUB67	Os10g0552400	LOC_Os10g40490	stress tolerance	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Our findings revealed OsPUB67 mediated a multilayered complex drought stress tolerance mechanism
OsPUB7	Os04g0348400	LOC_Os04g28100	resistance	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 In this study, to investigate the function of OsPUB7 (Plant U-box gene in Oryza sativa), we constructed a CRISPR/Cas9 vector, generated OsPUB7 gene-edited individuals, and evaluated resistance to abiotic stress using gene-edited lines
OsPUB7	Os04g0348400	LOC_Os04g28100	drought	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 This result provides evidence that OsPUB7 will be a useful target for both breeding and future research on drought tolerance/abiotic stress in rice
OsPUB7	Os04g0348400	LOC_Os04g28100	stress	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.
OsPUB7	Os04g0348400	LOC_Os04g28100	stress	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 In this study, to investigate the function of OsPUB7 (Plant U-box gene in Oryza sativa), we constructed a CRISPR/Cas9 vector, generated OsPUB7 gene-edited individuals, and evaluated resistance to abiotic stress using gene-edited lines
OsPUB7	Os04g0348400	LOC_Os04g28100	stress	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 This result provides evidence that OsPUB7 will be a useful target for both breeding and future research on drought tolerance/abiotic stress in rice
OsPUB7	Os04g0348400	LOC_Os04g28100	tolerance	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.
OsPUB7	Os04g0348400	LOC_Os04g28100	abiotic stress	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.
OsPUB7	Os04g0348400	LOC_Os04g28100	abiotic stress	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 In this study, to investigate the function of OsPUB7 (Plant U-box gene in Oryza sativa), we constructed a CRISPR/Cas9 vector, generated OsPUB7 gene-edited individuals, and evaluated resistance to abiotic stress using gene-edited lines
OsPUB7	Os04g0348400	LOC_Os04g28100	abiotic stress	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 This result provides evidence that OsPUB7 will be a useful target for both breeding and future research on drought tolerance/abiotic stress in rice
OsPUB7	Os04g0348400	LOC_Os04g28100	drought tolerance	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 This result provides evidence that OsPUB7 will be a useful target for both breeding and future research on drought tolerance/abiotic stress in rice
OsPUB7	Os04g0348400	LOC_Os04g28100	biotic stress	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.
OsPUB7	Os04g0348400	LOC_Os04g28100	biotic stress	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 In this study, to investigate the function of OsPUB7 (Plant U-box gene in Oryza sativa), we constructed a CRISPR/Cas9 vector, generated OsPUB7 gene-edited individuals, and evaluated resistance to abiotic stress using gene-edited lines
OsPUB7	Os04g0348400	LOC_Os04g28100	biotic stress	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 This result provides evidence that OsPUB7 will be a useful target for both breeding and future research on drought tolerance/abiotic stress in rice
OsPUB7	Os04g0348400	LOC_Os04g28100	stress tolerance	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.
OsPUB7	Os04g0348400	LOC_Os04g28100	breeding	Knockout Mutants of OsPUB7 Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	 This result provides evidence that OsPUB7 will be a useful target for both breeding and future research on drought tolerance/abiotic stress in rice
OsPUB73	Os02g0490000	LOC_Os02g28870	pollen	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.
OsPUB73	Os02g0490000	LOC_Os02g28870	pollen	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	In the present study, we knocked out OsPUB73 by using the CRISPR/Cas9 system and studied the cytological and transcriptome of the gene-defect associated with pollen development and sterility in the rice variety (Taichung 65)
OsPUB73	Os02g0490000	LOC_Os02g28870	pollen	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	The ospub73 displayed low pollen fertility (19
OsPUB73	Os02g0490000	LOC_Os02g28870	pollen	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	Cytological observation showed tapetum vacuolated at the meiosis stage and pollen exine was abnormal at the bi-cellular pollen stage of ospub73
OsPUB73	Os02g0490000	LOC_Os02g28870	pollen	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	These results suggested OsPUB73 may play an important role in tapetal or pollen exine development and resulted in pollen partial sterility
OsPUB73	Os02g0490000	LOC_Os02g28870	anther	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	The expression pattern of OsPUB73 showed that it was highly expressed in the anther during meiosis stage
OsPUB73	Os02g0490000	LOC_Os02g28870	anther	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	RNA-seq analysis detected 2240 down and 571 up-regulated genes in anther of ospub73 compared with WT during meiosis stage
OsPUB73	Os02g0490000	LOC_Os02g28870	sterility	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	In the present study, we knocked out OsPUB73 by using the CRISPR/Cas9 system and studied the cytological and transcriptome of the gene-defect associated with pollen development and sterility in the rice variety (Taichung 65)
OsPUB73	Os02g0490000	LOC_Os02g28870	sterility	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	These results suggested OsPUB73 may play an important role in tapetal or pollen exine development and resulted in pollen partial sterility
OsPUB73	Os02g0490000	LOC_Os02g28870	development	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	In the present study, we knocked out OsPUB73 by using the CRISPR/Cas9 system and studied the cytological and transcriptome of the gene-defect associated with pollen development and sterility in the rice variety (Taichung 65)
OsPUB73	Os02g0490000	LOC_Os02g28870	development	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	These results suggested OsPUB73 may play an important role in tapetal or pollen exine development and resulted in pollen partial sterility
OsPUB73	Os02g0490000	LOC_Os02g28870	development	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	Our results revealed that OsPUB73 plays an important role in rice male reproductive development, which provides valuable information about the molecular mechanisms of the U-box in rice male reproductive development
OsPUB73	Os02g0490000	LOC_Os02g28870	reproductive	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	Our results revealed that OsPUB73 plays an important role in rice male reproductive development, which provides valuable information about the molecular mechanisms of the U-box in rice male reproductive development
OsPUB73	Os02g0490000	LOC_Os02g28870	meiosis	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	The expression pattern of OsPUB73 showed that it was highly expressed in the anther during meiosis stage
OsPUB73	Os02g0490000	LOC_Os02g28870	meiosis	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	Cytological observation showed tapetum vacuolated at the meiosis stage and pollen exine was abnormal at the bi-cellular pollen stage of ospub73
OsPUB73	Os02g0490000	LOC_Os02g28870	meiosis	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	RNA-seq analysis detected 2240 down and 571 up-regulated genes in anther of ospub73 compared with WT during meiosis stage
OsPUB73	Os02g0490000	LOC_Os02g28870	fertility	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	The ospub73 displayed low pollen fertility (19
OsPUB73	Os02g0490000	LOC_Os02g28870	tapetum	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.
OsPUB73	Os02g0490000	LOC_Os02g28870	tapetum	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	Cytological observation showed tapetum vacuolated at the meiosis stage and pollen exine was abnormal at the bi-cellular pollen stage of ospub73
OsPUB73	Os02g0490000	LOC_Os02g28870	tapetal	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	These results suggested OsPUB73 may play an important role in tapetal or pollen exine development and resulted in pollen partial sterility
OsPUB73	Os02g0490000	LOC_Os02g28870	pollen development	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	In the present study, we knocked out OsPUB73 by using the CRISPR/Cas9 system and studied the cytological and transcriptome of the gene-defect associated with pollen development and sterility in the rice variety (Taichung 65)
OsPUB73	Os02g0490000	LOC_Os02g28870	reproductive development	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	Our results revealed that OsPUB73 plays an important role in rice male reproductive development, which provides valuable information about the molecular mechanisms of the U-box in rice male reproductive development
OsPUL	None	None	starch	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	The expression of the OsPUL gene was maintained at a significant level during the entire grain filling period and in the late stage of seed germination, which coincided with its involvement in starch anabolism and catabolism
OsPUL	None	None	grain filling	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	The expression of the OsPUL gene was maintained at a significant level during the entire grain filling period and in the late stage of seed germination, which coincided with its involvement in starch anabolism and catabolism
OsPUL	None	None	seed development	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	The OsPUL gene maintained a relatively high expression level during the entire period of seed development, and peaked in the middle and late stages
OsPUL	None	None	seed development	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice
OsPUL	None	None	branching	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice
OsPUL	None	None	endosperm	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	In addition, the 1177-bp OsPUL promoter sequence was cloned, and some endosperm-specific motifs such as the GCN4 and AACA motifs were observed to exist in this region
OsPUL	None	None	endosperm	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	The data from both histochemical and fluorometric analyses showed that the OsPUL promoter was capable of driving the target gene to have a high level of endosperm-specific expression
OsPUL	None	None	seed germination	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	Furthermore, the seed germination experiment showed that the OsPUL promoter actively functions in the late stage of seed germination
OsPUL	None	None	seed germination	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	The expression of the OsPUL gene was maintained at a significant level during the entire grain filling period and in the late stage of seed germination, which coincided with its involvement in starch anabolism and catabolism
OsPUL	None	None	seed	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	In the present study, we performed a quantitative real-time PCR (Q-PCR) analysis of the expression pattern of the OsPUL gene encoding a pullulanase-type DBE in different tissues as well as in seeds at different developmental stages
OsPUL	None	None	seed	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	The OsPUL gene maintained a relatively high expression level during the entire period of seed development, and peaked in the middle and late stages
OsPUL	None	None	seed	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	Furthermore, the seed germination experiment showed that the OsPUL promoter actively functions in the late stage of seed germination
OsPUL	None	None	seed	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	The expression of the OsPUL gene was maintained at a significant level during the entire grain filling period and in the late stage of seed germination, which coincided with its involvement in starch anabolism and catabolism
OsPUL	None	None	seed	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice
OsPUL	None	None	grain	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice	The expression of the OsPUL gene was maintained at a significant level during the entire grain filling period and in the late stage of seed germination, which coincided with its involvement in starch anabolism and catabolism
OsPUP1	Os03g0187800	LOC_Os03g08880	leaf	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates Plant Height and Grain Weight by Modulating Cytokinin Distribution in Rice	Overexpression of OsPUP1 resulted in growth defect of various aerial tissues, including decreased leaf length, plant height, grain weight, panicle length, and grain number
OsPUP1	Os03g0187800	LOC_Os03g08880	growth	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates Plant Height and Grain Weight by Modulating Cytokinin Distribution in Rice	Overexpression of OsPUP1 resulted in growth defect of various aerial tissues, including decreased leaf length, plant height, grain weight, panicle length, and grain number
OsPUP1	Os03g0187800	LOC_Os03g08880	panicle	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates Plant Height and Grain Weight by Modulating Cytokinin Distribution in Rice	Overexpression of OsPUP1 resulted in growth defect of various aerial tissues, including decreased leaf length, plant height, grain weight, panicle length, and grain number
OsPUP1	Os03g0187800	LOC_Os03g08880	grain	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates Plant Height and Grain Weight by Modulating Cytokinin Distribution in Rice	Overexpression of OsPUP1 resulted in growth defect of various aerial tissues, including decreased leaf length, plant height, grain weight, panicle length, and grain number
OsPUP1	Os03g0187800	LOC_Os03g08880	grain number	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates Plant Height and Grain Weight by Modulating Cytokinin Distribution in Rice	Overexpression of OsPUP1 resulted in growth defect of various aerial tissues, including decreased leaf length, plant height, grain weight, panicle length, and grain number
OsPUP1	Os03g0187800	LOC_Os03g08880	plant height	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates Plant Height and Grain Weight by Modulating Cytokinin Distribution in Rice	Overexpression of OsPUP1 resulted in growth defect of various aerial tissues, including decreased leaf length, plant height, grain weight, panicle length, and grain number
OsPUP1	Os03g0187800	LOC_Os03g08880	plasma membrane	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates Plant Height and Grain Weight by Modulating Cytokinin Distribution in Rice	Genetic analysis revealed that BG3/OsPUP4, a putative plasma membrane-localized CK transporter, overcomes the function of OsPUP1
OsPUP1	Os03g0187800	LOC_Os03g08880	grain weight	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates Plant Height and Grain Weight by Modulating Cytokinin Distribution in Rice	Overexpression of OsPUP1 resulted in growth defect of various aerial tissues, including decreased leaf length, plant height, grain weight, panicle length, and grain number
OsPUP1	Os03g0187800	LOC_Os03g08880	panicle length	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates Plant Height and Grain Weight by Modulating Cytokinin Distribution in Rice	Overexpression of OsPUP1 resulted in growth defect of various aerial tissues, including decreased leaf length, plant height, grain weight, panicle length, and grain number
OsPUP7	Os05g0556800	LOC_Os05g48300	vascular bundle	Characterization of a purine permease family gene OsPUP7 involved in growth and development control in rice	OsPUP7 is expressed mainly in the vascular bundle, pistil, and stamens
OsPUP7	Os05g0556800	LOC_Os05g48300	growth	Characterization of a purine permease family gene OsPUP7 involved in growth and development control in rice	Characterization of a purine permease family gene OsPUP7 involved in growth and development control in rice
OsPUP7	Os05g0556800	LOC_Os05g48300	stamen	Characterization of a purine permease family gene OsPUP7 involved in growth and development control in rice	OsPUP7 is expressed mainly in the vascular bundle, pistil, and stamens
OsPUT1	Os02g0700500	LOC_Os02g47210	root	Functional analysis of OsPUT1, a rice polyamine uptake transporter	Tissue-specific expression of OsPUT1 by semiquantitative RT-PCR showed that the gene was expressed in all tissues except seeds and roots
OsPUT1	Os02g0700500	LOC_Os02g47210	seed	Functional analysis of OsPUT1, a rice polyamine uptake transporter	Tissue-specific expression of OsPUT1 by semiquantitative RT-PCR showed that the gene was expressed in all tissues except seeds and roots
OsPUT1	Os02g0700500	LOC_Os02g47210	transporter	Functional analysis of OsPUT1, a rice polyamine uptake transporter	Based on those observations, this rice gene was named polyamine uptake transporter 1 (OsPUT1)
OsPUT1	Os02g0700500	LOC_Os02g47210	transporter	Functional analysis of OsPUT1, a rice polyamine uptake transporter	Functional analysis of OsPUT1, a rice polyamine uptake transporter
OsPUT3	Os10g0476300	LOC_Os10g33650	chloroplast	Altered expression of polyamine transporters reveals a role for spermidine in the timing of flowering and other developmental response pathways.	thaliana and rice transporters AtPUT5 and OsPUT1 were localized to the ER, while the AtPUT2, AtPUT3, and OsPUT3 were localized to the chloroplast by transient expression in N
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	growth	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth	Transgenic rice plants expressing OsPYL/RCAR5, a PYL/RCAR orthologue of rice, were found to be hypersensitive to ABA during seed germination and early seedling growth
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	growth	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	seedling	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth	Transgenic rice plants expressing OsPYL/RCAR5, a PYL/RCAR orthologue of rice, were found to be hypersensitive to ABA during seed germination and early seedling growth
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	seedling	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	growth	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	The constitutive expression of OsPYL/RCAR5 in rice driven by the Zea mays ubiquitin promoter induced the expression of many stress-responsive genes even under normal growth conditions and resulted in improved drought and salt stress tolerance in rice
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	ABA	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth	Transgenic rice plants expressing OsPYL/RCAR5, a PYL/RCAR orthologue of rice, were found to be hypersensitive to ABA during seed germination and early seedling growth
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	ABA	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth	A rice ABA signalling unit composed of OsPYL/RCAR5, OsPP2C30, SAPK2, and OREB1 for ABA-dependent gene regulation was further identified, via interaction assays and a transient gene expression assay
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	ABA	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	abiotic stress	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	This suggests that, although exogenous expression of OsPYL/RCAR5 is able to improve abiotic stress tolerance in rice, fine regulation of its expression will be required to avoid deleterious effects on agricultural traits
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	abiotic stress	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	OsPYL/RCARs thus are considered to be good candidate genes for improvement of abiotic stress tolerance in crops
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	abiotic stress	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	This suggests that, although exogenous expression of OsPYL/RCAR5 is able to improve abiotic stress tolerance in rice, fine regulation of its expression will be required to avoid deleterious effects on agricultural traits
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	salt	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	The constitutive expression of OsPYL/RCAR5 in rice driven by the Zea mays ubiquitin promoter induced the expression of many stress-responsive genes even under normal growth conditions and resulted in improved drought and salt stress tolerance in rice
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	ABA	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	This work demonstrates that the cytosolic ABA receptor OsPYL/RCAR5 in O
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	seed germination	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth	Transgenic rice plants expressing OsPYL/RCAR5, a PYL/RCAR orthologue of rice, were found to be hypersensitive to ABA during seed germination and early seedling growth
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	seed germination	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	drought	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	The constitutive expression of OsPYL/RCAR5 in rice driven by the Zea mays ubiquitin promoter induced the expression of many stress-responsive genes even under normal growth conditions and resulted in improved drought and salt stress tolerance in rice
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	salt stress	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	The constitutive expression of OsPYL/RCAR5 in rice driven by the Zea mays ubiquitin promoter induced the expression of many stress-responsive genes even under normal growth conditions and resulted in improved drought and salt stress tolerance in rice
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	ABA	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	Previous work identified OsPYL/RCARs as functional ABA receptors regulating ABA-dependent gene expression in Oryza sativa
OsPYL|RCAR5|OsPYL5	Os05g0213500	LOC_Os05g12260	ABA	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	This work demonstrates that the cytosolic ABA receptor OsPYL/RCAR5 in O
OsPYL1	Os10g0573400	LOC_Os10g42280	ABA	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Furthermore, OsABIL2 interacts with and co-localized with OsPYL1 mainly in the cytosol, and ABA treatment regulates the nucleus-cytosol distribution of OsABIL2, suggesting a different mechanism for the activation of ABA signaling
OsPYL1	Os10g0573400	LOC_Os10g42280	ABA	Abscisic acid regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza Sativa.	Furthermore, OsABIL2 interacts with and co-localized with OsPYL1 mainly in the cytosol, and ABA treatment regulates the nucleus-cytosol distribution of OsABIL2, suggesting a different mechanism for the activation of ABA signaling
OsPYL10	None	LOC_Os05g15640	drought	Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice.	Towards elucidating the functions of one of the ABA receptors (ABARs) in rice, OsPYL10 was cloned from drought tolerant rice cv
OsPYL10	None	LOC_Os05g15640	drought	Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice.	Thus, overall results showed that OsPYL10 overexpression has potential to improve both drought and cold stress tolerance of indica rice
OsPYL10	None	LOC_Os05g15640	tolerance	Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice.	Thus, overall results showed that OsPYL10 overexpression has potential to improve both drought and cold stress tolerance of indica rice
OsPYL10	None	LOC_Os05g15640	cold stress	Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice.	Thus, overall results showed that OsPYL10 overexpression has potential to improve both drought and cold stress tolerance of indica rice
OsPYL10	None	LOC_Os05g15640	ABA	Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice.	Towards elucidating the functions of one of the ABA receptors (ABARs) in rice, OsPYL10 was cloned from drought tolerant rice cv
OsPYL10	None	LOC_Os05g15640	stress	Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice.	Thus, overall results showed that OsPYL10 overexpression has potential to improve both drought and cold stress tolerance of indica rice
OsPYL10	None	LOC_Os05g15640	reproductive	Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice.	At reproductive stage, OsPYL10 transgenic maintained higher RWC, membrane stability index, chlorophyll content, and accumulated lower amount of MDA and H2O2 as compared with WT plants
OsPYL10	None	LOC_Os05g15640	ABA	Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice.	Towards elucidating the functions of one of the ABA receptors (ABARs) in rice, OsPYL10 was cloned from drought tolerant rice cv
OsPYL10	None	LOC_Os05g15640	stress tolerance	Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice.	Thus, overall results showed that OsPYL10 overexpression has potential to improve both drought and cold stress tolerance of indica rice
OsPYL6	Os03g0297600	LOC_Os03g18600	seedlings	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Both overexpression and RNAi silencing of OsPYL6 resulted in enhanced accumulation of ABA in seedlings under non-stress, at least, in part through upregulation of different NCED genes
OsPYL6	Os03g0297600	LOC_Os03g18600	root	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Overexpression of OsPYL6 conferred ABA hypersensitivity during germination and promoted total root length
OsPYL6	Os03g0297600	LOC_Os03g18600	development	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	These results showed that OsPYL6 is a key regulator of plant development and drought tolerance, and fine-tuning of its expression is critical for improving yield and stress tolerance in rice
OsPYL6	Os03g0297600	LOC_Os03g18600	plant development	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	These results showed that OsPYL6 is a key regulator of plant development and drought tolerance, and fine-tuning of its expression is critical for improving yield and stress tolerance in rice
OsPYL6	Os03g0297600	LOC_Os03g18600	grain	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	RNAi silencing of OsPYL6 also significantly reduced the grain yield under drought
OsPYL6	Os03g0297600	LOC_Os03g18600	drought	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms
OsPYL6	Os03g0297600	LOC_Os03g18600	drought	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Analysis of drought tolerance of OsPYL6 transgenics and WT plants showed that OsPYL6 overexpression enhanced the expression of stress responsive genes and dehydration tolerance
OsPYL6	Os03g0297600	LOC_Os03g18600	drought	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	RNAi silencing of OsPYL6 also significantly reduced the grain yield under drought
OsPYL6	Os03g0297600	LOC_Os03g18600	drought	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	These results showed that OsPYL6 is a key regulator of plant development and drought tolerance, and fine-tuning of its expression is critical for improving yield and stress tolerance in rice
OsPYL6	Os03g0297600	LOC_Os03g18600	tolerance	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms
OsPYL6	Os03g0297600	LOC_Os03g18600	tolerance	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Analysis of drought tolerance of OsPYL6 transgenics and WT plants showed that OsPYL6 overexpression enhanced the expression of stress responsive genes and dehydration tolerance
OsPYL6	Os03g0297600	LOC_Os03g18600	tolerance	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	These results showed that OsPYL6 is a key regulator of plant development and drought tolerance, and fine-tuning of its expression is critical for improving yield and stress tolerance in rice
OsPYL6	Os03g0297600	LOC_Os03g18600	grain yield	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	RNAi silencing of OsPYL6 also significantly reduced the grain yield under drought
OsPYL6	Os03g0297600	LOC_Os03g18600	yield	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	RNAi silencing of OsPYL6 also significantly reduced the grain yield under drought
OsPYL6	Os03g0297600	LOC_Os03g18600	yield	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	These results showed that OsPYL6 is a key regulator of plant development and drought tolerance, and fine-tuning of its expression is critical for improving yield and stress tolerance in rice
OsPYL6	Os03g0297600	LOC_Os03g18600	ABA	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Here we report functional validation of ABA receptor OsPYL6 by constitutive and stress inducible overexpression, and RNAi silencing in an indica rice cv
OsPYL6	Os03g0297600	LOC_Os03g18600	ABA	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Overexpression of OsPYL6 conferred ABA hypersensitivity during germination and promoted total root length
OsPYL6	Os03g0297600	LOC_Os03g18600	ABA	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Both overexpression and RNAi silencing of OsPYL6 resulted in enhanced accumulation of ABA in seedlings under non-stress, at least, in part through upregulation of different NCED genes
OsPYL6	Os03g0297600	LOC_Os03g18600	drought tolerance	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms
OsPYL6	Os03g0297600	LOC_Os03g18600	drought tolerance	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Analysis of drought tolerance of OsPYL6 transgenics and WT plants showed that OsPYL6 overexpression enhanced the expression of stress responsive genes and dehydration tolerance
OsPYL6	Os03g0297600	LOC_Os03g18600	drought tolerance	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	These results showed that OsPYL6 is a key regulator of plant development and drought tolerance, and fine-tuning of its expression is critical for improving yield and stress tolerance in rice
OsPYL6	Os03g0297600	LOC_Os03g18600	stress	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Here we report functional validation of ABA receptor OsPYL6 by constitutive and stress inducible overexpression, and RNAi silencing in an indica rice cv
OsPYL6	Os03g0297600	LOC_Os03g18600	stress	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Analysis of drought tolerance of OsPYL6 transgenics and WT plants showed that OsPYL6 overexpression enhanced the expression of stress responsive genes and dehydration tolerance
OsPYL6	Os03g0297600	LOC_Os03g18600	stress	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	These results showed that OsPYL6 is a key regulator of plant development and drought tolerance, and fine-tuning of its expression is critical for improving yield and stress tolerance in rice
OsPYL6	Os03g0297600	LOC_Os03g18600	ABA	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms
OsPYL6	Os03g0297600	LOC_Os03g18600	ABA	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Here we report functional validation of ABA receptor OsPYL6 by constitutive and stress inducible overexpression, and RNAi silencing in an indica rice cv
OsPYL6	Os03g0297600	LOC_Os03g18600	ABA	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Overexpression of OsPYL6 conferred ABA hypersensitivity during germination and promoted total root length
OsPYL6	Os03g0297600	LOC_Os03g18600	ABA	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Both overexpression and RNAi silencing of OsPYL6 resulted in enhanced accumulation of ABA in seedlings under non-stress, at least, in part through upregulation of different NCED genes
OsPYL6	Os03g0297600	LOC_Os03g18600	stress tolerance	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	These results showed that OsPYL6 is a key regulator of plant development and drought tolerance, and fine-tuning of its expression is critical for improving yield and stress tolerance in rice
OsPYL6	Os03g0297600	LOC_Os03g18600	root length	ABA receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms	Overexpression of OsPYL6 conferred ABA hypersensitivity during germination and promoted total root length
OsPYL9	Os06g0562200	LOC_Os06g36670	grain	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins
OsPYL9	Os06g0562200	LOC_Os06g36670	grain	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	The OsPYL9 mutants showed an increase in grain yield under both drought and well watered field conditions
OsPYL9	Os06g0562200	LOC_Os06g36670	drought	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins
OsPYL9	Os06g0562200	LOC_Os06g36670	drought	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	The OsPYL9 mutants showed an increase in grain yield under both drought and well watered field conditions
OsPYL9	Os06g0562200	LOC_Os06g36670	drought	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Thus, the overall results showed that CRISPR/Cas9-generated OsPYL9 mutants have potential to improve both drought tolerance and the yield of rice
OsPYL9	Os06g0562200	LOC_Os06g36670	tolerance	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins
OsPYL9	Os06g0562200	LOC_Os06g36670	tolerance	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Thus, the overall results showed that CRISPR/Cas9-generated OsPYL9 mutants have potential to improve both drought tolerance and the yield of rice
OsPYL9	Os06g0562200	LOC_Os06g36670	grain yield	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins
OsPYL9	Os06g0562200	LOC_Os06g36670	grain yield	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	The OsPYL9 mutants showed an increase in grain yield under both drought and well watered field conditions
OsPYL9	Os06g0562200	LOC_Os06g36670	yield	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins
OsPYL9	Os06g0562200	LOC_Os06g36670	yield	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	The OsPYL9 mutants showed an increase in grain yield under both drought and well watered field conditions
OsPYL9	Os06g0562200	LOC_Os06g36670	yield	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Thus, the overall results showed that CRISPR/Cas9-generated OsPYL9 mutants have potential to improve both drought tolerance and the yield of rice
OsPYL9	Os06g0562200	LOC_Os06g36670	abiotic stress	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins
OsPYL9	Os06g0562200	LOC_Os06g36670	ABA	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	To elucidate the role of one of the ABA receptors in rice, OsPYL9 was mutagenized through CRISPR/Cas9 in rice
OsPYL9	Os06g0562200	LOC_Os06g36670	drought tolerance	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins
OsPYL9	Os06g0562200	LOC_Os06g36670	drought tolerance	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Thus, the overall results showed that CRISPR/Cas9-generated OsPYL9 mutants have potential to improve both drought tolerance and the yield of rice
OsPYL9	Os06g0562200	LOC_Os06g36670	stress	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins
OsPYL9	Os06g0562200	LOC_Os06g36670	biotic stress	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins
OsPYL9	Os06g0562200	LOC_Os06g36670	ABA	Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice ( Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins	To elucidate the role of one of the ABA receptors in rice, OsPYL9 was mutagenized through CRISPR/Cas9 in rice
OsR3L1	Os04g0554500	LOC_Os04g46810	transcription factor	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	The expression of OsR3L1 was initiated by the OsMADS25 transcription factor
OsR3L1	Os04g0554500	LOC_Os04g46810	root	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	While the r3l1 mutants had a defective root system with fewer adventitious roots (ARs) and lateral roots (LRs) than the wild type, lines overexpressing OsR3L1 (R3L1-OE) showed
OsR3L1	Os04g0554500	LOC_Os04g46810	root	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	OsR3L1 (Os04g0554500), the root-specific expression HyPRP protein, regulates root system development and salt tolerance through regulation peroxidases and apoplastic H2 O2 metabolism
OsR3L1	Os04g0554500	LOC_Os04g46810	development	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	OsR3L1 (Os04g0554500), the root-specific expression HyPRP protein, regulates root system development and salt tolerance through regulation peroxidases and apoplastic H2 O2 metabolism
OsR3L1	Os04g0554500	LOC_Os04g46810	salt	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	We conclude that OsR3L1 regulates salt tolerance through regulation peroxidases and apoplastic H2 O2 metabolism
OsR3L1	Os04g0554500	LOC_Os04g46810	salt	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	OsR3L1 (Os04g0554500), the root-specific expression HyPRP protein, regulates root system development and salt tolerance through regulation peroxidases and apoplastic H2 O2 metabolism
OsR3L1	Os04g0554500	LOC_Os04g46810	tolerance	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	We conclude that OsR3L1 regulates salt tolerance through regulation peroxidases and apoplastic H2 O2 metabolism
OsR3L1	Os04g0554500	LOC_Os04g46810	tolerance	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	OsR3L1 (Os04g0554500), the root-specific expression HyPRP protein, regulates root system development and salt tolerance through regulation peroxidases and apoplastic H2 O2 metabolism
OsR3L1	Os04g0554500	LOC_Os04g46810	salt tolerance	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	We conclude that OsR3L1 regulates salt tolerance through regulation peroxidases and apoplastic H2 O2 metabolism
OsR3L1	Os04g0554500	LOC_Os04g46810	salt tolerance	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	OsR3L1 (Os04g0554500), the root-specific expression HyPRP protein, regulates root system development and salt tolerance through regulation peroxidases and apoplastic H2 O2 metabolism
OsR3L1	Os04g0554500	LOC_Os04g46810	lateral root	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	While the r3l1 mutants had a defective root system with fewer adventitious roots (ARs) and lateral roots (LRs) than the wild type, lines overexpressing OsR3L1 (R3L1-OE) showed
OsR3L1	Os04g0554500	LOC_Os04g46810	adventitious root	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.)	While the r3l1 mutants had a defective root system with fewer adventitious roots (ARs) and lateral roots (LRs) than the wild type, lines overexpressing OsR3L1 (R3L1-OE) showed
Osr40c1	Os03g0327600	LOC_Os03g21040	drought	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins
Osr40c1	Os03g0327600	LOC_Os03g21040	drought	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	In this study, it has been depicted that expression of Osr40c1 gene correlates with the drought tolerance potential of various rice cultivars
Osr40c1	Os03g0327600	LOC_Os03g21040	drought	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Transgenic rice plants overexpressing Osr40c1 were significantly more tolerant to drought stress over the wild-type plants
Osr40c1	Os03g0327600	LOC_Os03g21040	drought	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Silencing of each of these protein partners led to drought sensitivity in the otherwise tolerant Osr40c1 expressing transgenic tobacco lines indicating that these partners were crucial for the Osr40c1-mediated drought tolerance in planta
Osr40c1	Os03g0327600	LOC_Os03g21040	drought	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Moreover, the association of Osr40c1 with these partners occurred specifically under drought stress forming a multi-protein complex
Osr40c1	Os03g0327600	LOC_Os03g21040	drought	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Together, the present investigation delineated the novel role of Osr40c1 protein in imparting drought tolerance by regulating OsMNB1B, OsSAM2, and OsH4 proteins, which presumably enables OsSAP8 to induce downstream gene expression
Osr40c1	Os03g0327600	LOC_Os03g21040	tolerance	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins
Osr40c1	Os03g0327600	LOC_Os03g21040	tolerance	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	In this study, it has been depicted that expression of Osr40c1 gene correlates with the drought tolerance potential of various rice cultivars
Osr40c1	Os03g0327600	LOC_Os03g21040	tolerance	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Silencing of each of these protein partners led to drought sensitivity in the otherwise tolerant Osr40c1 expressing transgenic tobacco lines indicating that these partners were crucial for the Osr40c1-mediated drought tolerance in planta
Osr40c1	Os03g0327600	LOC_Os03g21040	tolerance	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Together, the present investigation delineated the novel role of Osr40c1 protein in imparting drought tolerance by regulating OsMNB1B, OsSAM2, and OsH4 proteins, which presumably enables OsSAP8 to induce downstream gene expression
Osr40c1	Os03g0327600	LOC_Os03g21040	drought tolerance	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins
Osr40c1	Os03g0327600	LOC_Os03g21040	drought tolerance	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	In this study, it has been depicted that expression of Osr40c1 gene correlates with the drought tolerance potential of various rice cultivars
Osr40c1	Os03g0327600	LOC_Os03g21040	drought tolerance	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Silencing of each of these protein partners led to drought sensitivity in the otherwise tolerant Osr40c1 expressing transgenic tobacco lines indicating that these partners were crucial for the Osr40c1-mediated drought tolerance in planta
Osr40c1	Os03g0327600	LOC_Os03g21040	drought tolerance	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Together, the present investigation delineated the novel role of Osr40c1 protein in imparting drought tolerance by regulating OsMNB1B, OsSAM2, and OsH4 proteins, which presumably enables OsSAP8 to induce downstream gene expression
Osr40c1	Os03g0327600	LOC_Os03g21040	stress	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Transgenic rice plants overexpressing Osr40c1 were significantly more tolerant to drought stress over the wild-type plants
Osr40c1	Os03g0327600	LOC_Os03g21040	stress	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Moreover, the association of Osr40c1 with these partners occurred specifically under drought stress forming a multi-protein complex
Osr40c1	Os03g0327600	LOC_Os03g21040	drought stress	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Transgenic rice plants overexpressing Osr40c1 were significantly more tolerant to drought stress over the wild-type plants
Osr40c1	Os03g0327600	LOC_Os03g21040	drought stress	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Moreover, the association of Osr40c1 with these partners occurred specifically under drought stress forming a multi-protein complex
Osr40c1	Os03g0327600	LOC_Os03g21040	drought sensitivity	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Silencing of each of these protein partners led to drought sensitivity in the otherwise tolerant Osr40c1 expressing transgenic tobacco lines indicating that these partners were crucial for the Osr40c1-mediated drought tolerance in planta
Osr40c1	Os03g0327600	LOC_Os03g21040	drought stress	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Transgenic rice plants overexpressing Osr40c1 were significantly more tolerant to drought stress over the wild-type plants
Osr40c1	Os03g0327600	LOC_Os03g21040	drought stress	Rice lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins	Moreover, the association of Osr40c1 with these partners occurred specifically under drought stress forming a multi-protein complex
OsRA2	Os01g0169400	LOC_Os01g07480	panicle	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	Genetic analysis revealed that OsRA2 may control panicle architecture using the same pathway as that of the axillary meristem gene LAX1 (LAX PANICLE1)
OsRA2	Os01g0169400	LOC_Os01g07480	panicle	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	Moreover, OsRA2 acted downstream of RCN2 in regulating pedicel and branch lengths, but upstream of RCN2 for control of the number of secondary branches, indicating that branch number and length development in the panicle were respectively regulated using parallel pathway
OsRA2	Os01g0169400	LOC_Os01g07480	spikelet	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	The OsRA2 protein localized to the nucleus and showed transcriptional activation in yeast; in accordance with its function in pedicel development, OsRA2 mRNA was enriched in the anlagen of axillary meristems, such as primary and secondary branch meristems and the spikelet meristems of young panicles
OsRA2	Os01g0169400	LOC_Os01g07480	development	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	Moreover, OsRA2 acted downstream of RCN2 in regulating pedicel and branch lengths, but upstream of RCN2 for control of the number of secondary branches, indicating that branch number and length development in the panicle were respectively regulated using parallel pathway
OsRA2	Os01g0169400	LOC_Os01g07480	seed	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	In addition, OsRA2 influenced seed morphology
OsRA2	Os01g0169400	LOC_Os01g07480	meristem	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	Genetic analysis revealed that OsRA2 may control panicle architecture using the same pathway as that of the axillary meristem gene LAX1 (LAX PANICLE1)
OsRA2	Os01g0169400	LOC_Os01g07480	spikelet meristem	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	The OsRA2 protein localized to the nucleus and showed transcriptional activation in yeast; in accordance with its function in pedicel development, OsRA2 mRNA was enriched in the anlagen of axillary meristems, such as primary and secondary branch meristems and the spikelet meristems of young panicles
OsRA2	Os01g0169400	LOC_Os01g07480	inflorescence	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	This indicates a conserved role of OsRA2 for shaping the initial steps of inflorescence architecture
OsRA2	Os01g0169400	LOC_Os01g07480	architecture	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	This indicates a conserved role of OsRA2 for shaping the initial steps of inflorescence architecture
OsRA2	Os01g0169400	LOC_Os01g07480	architecture	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	Genetic analysis revealed that OsRA2 may control panicle architecture using the same pathway as that of the axillary meristem gene LAX1 (LAX PANICLE1)
OsRA2	Os01g0169400	LOC_Os01g07480	inflorescence architecture	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	This indicates a conserved role of OsRA2 for shaping the initial steps of inflorescence architecture
OsRA2	Os01g0169400	LOC_Os01g07480	nucleus	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	The OsRA2 protein localized to the nucleus and showed transcriptional activation in yeast; in accordance with its function in pedicel development, OsRA2 mRNA was enriched in the anlagen of axillary meristems, such as primary and secondary branch meristems and the spikelet meristems of young panicles
OsRA2	Os01g0169400	LOC_Os01g07480	panicle architecture	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	Genetic analysis revealed that OsRA2 may control panicle architecture using the same pathway as that of the axillary meristem gene LAX1 (LAX PANICLE1)
OsRA2	Os01g0169400	LOC_Os01g07480	axillary meristem	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	The OsRA2 protein localized to the nucleus and showed transcriptional activation in yeast; in accordance with its function in pedicel development, OsRA2 mRNA was enriched in the anlagen of axillary meristems, such as primary and secondary branch meristems and the spikelet meristems of young panicles
OsRA2	Os01g0169400	LOC_Os01g07480	axillary meristem	OsRAMOSA2 Shapes Panicle Architecture through Regulating Pedicel Length.	Genetic analysis revealed that OsRA2 may control panicle architecture using the same pathway as that of the axillary meristem gene LAX1 (LAX PANICLE1)
OsRAA1	Os01g0257300	LOC_Os01g15340	seedling	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Constitutive expression of OsRAA1 under the control of maize (Zea mays) ubiquitin promoter resulted in phenotypes of reduced growth of primary root, increased number of adventitious roots and helix primary root, and delayed gravitropic response of roots in seedlings of rice (Oryza sativa), which are similar to the phenotypes of the wild-type plant treated with auxin
OsRAA1	Os01g0257300	LOC_Os01g15340	cell division	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	Moreover, a colocalization assay has shown that OsRAA1 is expressed predominantly at spindles during cell division
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Here, the OsRAA1 (Oryza sativa Root Architecture Associated 1) gene has been characterized molecularly
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Data of in situ hybridization and OsRAA1::GUS transgenic plant showed that OsRAA1 expressed specifically in the apical meristem, the elongation zone of root tip, steles of the branch zone, and the young lateral root
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Constitutive expression of OsRAA1 under the control of maize (Zea mays) ubiquitin promoter resulted in phenotypes of reduced growth of primary root, increased number of adventitious roots and helix primary root, and delayed gravitropic response of roots in seedlings of rice (Oryza sativa), which are similar to the phenotypes of the wild-type plant treated with auxin
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	With overexpression of OsRAA1, initiation and growth of adventitious root were more sensitive to treatment of auxin than those of the control plants, while their responses to 9-hydroxyfluorene-9-carboxylic acid in both transgenic line and wild type showed similar results
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	These data suggested that OsRAA1 as a new gene functions in the development of rice root systems, which are mediated by auxin
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	A positive feedback regulation mechanism of OsRAA1 to indole-3-acetic acid metabolism may be involved in rice root development in nature
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity
OsRAA1	Os01g0257300	LOC_Os01g15340	leaf	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity
OsRAA1	Os01g0257300	LOC_Os01g15340	cell cycle	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	The expression of OsRAA1 in fission yeast also induced metaphase arrest, which is consistent with the fact that OsRAA1 functions through a conserved mechanism of cell cycle regulation
OsRAA1	Os01g0257300	LOC_Os01g15340	cell cycle	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	These results suggest that ubiquitination and proteasomic proteolysis are involved in OsRAA1 degradation, which is essential for the onset of anaphase, and that OsRAA1 may modulate root development mediated by the ubiquitin-proteasome pathway as a novel regulatory factor of the cell cycle
OsRAA1	Os01g0257300	LOC_Os01g15340	primary root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Constitutive expression of OsRAA1 under the control of maize (Zea mays) ubiquitin promoter resulted in phenotypes of reduced growth of primary root, increased number of adventitious roots and helix primary root, and delayed gravitropic response of roots in seedlings of rice (Oryza sativa), which are similar to the phenotypes of the wild-type plant treated with auxin
OsRAA1	Os01g0257300	LOC_Os01g15340	lateral root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Data of in situ hybridization and OsRAA1::GUS transgenic plant showed that OsRAA1 expressed specifically in the apical meristem, the elongation zone of root tip, steles of the branch zone, and the young lateral root
OsRAA1	Os01g0257300	LOC_Os01g15340	adventitious root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Constitutive expression of OsRAA1 under the control of maize (Zea mays) ubiquitin promoter resulted in phenotypes of reduced growth of primary root, increased number of adventitious roots and helix primary root, and delayed gravitropic response of roots in seedlings of rice (Oryza sativa), which are similar to the phenotypes of the wild-type plant treated with auxin
OsRAA1	Os01g0257300	LOC_Os01g15340	adventitious root	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	With overexpression of OsRAA1, initiation and growth of adventitious root were more sensitive to treatment of auxin than those of the control plants, while their responses to 9-hydroxyfluorene-9-carboxylic acid in both transgenic line and wild type showed similar results
OsRAA1	Os01g0257300	LOC_Os01g15340	sterile	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	OsRAA1 constitutive expression also caused longer leaves and sterile florets at the last stage of plant development
OsRAA1	Os01g0257300	LOC_Os01g15340	root architecture	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	Previous studies have identified rice (Oryza sativa) ROOT ARCHITECTURE ASSOCIATED1 (OsRAA1) as a regulator in root development
OsRAA1	Os01g0257300	LOC_Os01g15340	root development	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	A positive feedback regulation mechanism of OsRAA1 to indole-3-acetic acid metabolism may be involved in rice root development in nature
OsRAA1	Os01g0257300	LOC_Os01g15340	root development	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity
OsRAA1	Os01g0257300	LOC_Os01g15340	root architecture	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Here, the OsRAA1 (Oryza sativa Root Architecture Associated 1) gene has been characterized molecularly
OsRAA1	Os01g0257300	LOC_Os01g15340	growth	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	Here, we show that OsRAA1-overexpressed transgenic rice showed reduced primary root growth, increased numbers of cells in metaphase, and reduced numbers of cells in anaphase, which suggests that OsRAA1 is responsible for limiting root growth by inhibiting the onset of anaphase
OsRAA1	Os01g0257300	LOC_Os01g15340	architecture	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	Previous studies have identified rice (Oryza sativa) ROOT ARCHITECTURE ASSOCIATED1 (OsRAA1) as a regulator in root development
OsRAA1	Os01g0257300	LOC_Os01g15340	growth	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Constitutive expression of OsRAA1 under the control of maize (Zea mays) ubiquitin promoter resulted in phenotypes of reduced growth of primary root, increased number of adventitious roots and helix primary root, and delayed gravitropic response of roots in seedlings of rice (Oryza sativa), which are similar to the phenotypes of the wild-type plant treated with auxin
OsRAA1	Os01g0257300	LOC_Os01g15340	growth	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	With overexpression of OsRAA1, initiation and growth of adventitious root were more sensitive to treatment of auxin than those of the control plants, while their responses to 9-hydroxyfluorene-9-carboxylic acid in both transgenic line and wild type showed similar results
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	Previous studies have identified rice (Oryza sativa) ROOT ARCHITECTURE ASSOCIATED1 (OsRAA1) as a regulator in root development
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	Here, we show that OsRAA1-overexpressed transgenic rice showed reduced primary root growth, increased numbers of cells in metaphase, and reduced numbers of cells in anaphase, which suggests that OsRAA1 is responsible for limiting root growth by inhibiting the onset of anaphase
OsRAA1	Os01g0257300	LOC_Os01g15340	root	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	These results suggest that ubiquitination and proteasomic proteolysis are involved in OsRAA1 degradation, which is essential for the onset of anaphase, and that OsRAA1 may modulate root development mediated by the ubiquitin-proteasome pathway as a novel regulatory factor of the cell cycle
OsRAA1	Os01g0257300	LOC_Os01g15340	architecture	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Here, the OsRAA1 (Oryza sativa Root Architecture Associated 1) gene has been characterized molecularly
OsRAA1	Os01g0257300	LOC_Os01g15340	flower	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity
OsRAA1	Os01g0257300	LOC_Os01g15340	root development	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	Previous studies have identified rice (Oryza sativa) ROOT ARCHITECTURE ASSOCIATED1 (OsRAA1) as a regulator in root development
OsRAA1	Os01g0257300	LOC_Os01g15340	root development	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	These results suggest that ubiquitination and proteasomic proteolysis are involved in OsRAA1 degradation, which is essential for the onset of anaphase, and that OsRAA1 may modulate root development mediated by the ubiquitin-proteasome pathway as a novel regulatory factor of the cell cycle
OsRAA1	Os01g0257300	LOC_Os01g15340	primary root	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner	Here, we show that OsRAA1-overexpressed transgenic rice showed reduced primary root growth, increased numbers of cells in metaphase, and reduced numbers of cells in anaphase, which suggests that OsRAA1 is responsible for limiting root growth by inhibiting the onset of anaphase
OsRAA1	Os01g0257300	LOC_Os01g15340	auxin	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Constitutive expression of OsRAA1 under the control of maize (Zea mays) ubiquitin promoter resulted in phenotypes of reduced growth of primary root, increased number of adventitious roots and helix primary root, and delayed gravitropic response of roots in seedlings of rice (Oryza sativa), which are similar to the phenotypes of the wild-type plant treated with auxin
OsRAA1	Os01g0257300	LOC_Os01g15340	auxin	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	With overexpression of OsRAA1, initiation and growth of adventitious root were more sensitive to treatment of auxin than those of the control plants, while their responses to 9-hydroxyfluorene-9-carboxylic acid in both transgenic line and wild type showed similar results
OsRAA1	Os01g0257300	LOC_Os01g15340	auxin	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Analysis of northern blot and GUS activity staining of OsRAA1::GUS transgenic plants demonstrated that the OsRAA1 expression was induced by auxin
OsRAA1	Os01g0257300	LOC_Os01g15340	auxin	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	These data suggested that OsRAA1 as a new gene functions in the development of rice root systems, which are mediated by auxin
OsRAA1	Os01g0257300	LOC_Os01g15340	meristem	Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity	Data of in situ hybridization and OsRAA1::GUS transgenic plant showed that OsRAA1 expressed specifically in the apical meristem, the elongation zone of root tip, steles of the branch zone, and the young lateral root
OsRab11	Os06g0551400	LOC_Os06g35814	jasmonic	Rice Rab11 is required for JA-mediated defense signaling	OsRab11 was expressed broadly in plants and both OsRab11 and OsOPR8 were induced by jasmonic acid (JA) and elicitor treatments
OsRab11	Os06g0551400	LOC_Os06g35814	jasmonic acid	Rice Rab11 is required for JA-mediated defense signaling	OsRab11 was expressed broadly in plants and both OsRab11 and OsOPR8 were induced by jasmonic acid (JA) and elicitor treatments
OsRab11	Os06g0551400	LOC_Os06g35814	defense	Rice Rab11 is required for JA-mediated defense signaling	In conclusion, OsRab11 may be required for JA-mediated defense signaling by activating the reducing activity of OsOPR8
OsRab11C1	Os01g0667600	LOC_Os01g47730	seedling	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Overexpression of OsRab11C1 significantly reduced CTB, while gene knockout elevated CTB as well as cold tolerance at the seedling stage, suggesting that OsRab11C1 negatively regulates rice cold tolerance
OsRab11C1	Os01g0667600	LOC_Os01g47730	tolerance	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Overexpression of OsRab11C1 significantly reduced CTB, while gene knockout elevated CTB as well as cold tolerance at the seedling stage, suggesting that OsRab11C1 negatively regulates rice cold tolerance
OsRab11C1	Os01g0667600	LOC_Os01g47730	tolerance	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Molecular analysis revealed that OsRab11C1 modulates cold tolerance by suppressing the abscisic acid signalling pathway and proline biosynthesis
OsRab11C1	Os01g0667600	LOC_Os01g47730	tolerance	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Using RDP II and GWAS, we identified four qCTBs that are involved in CTB and determined the function of the candidate gene OsRab11C1 in cold tolerance
OsRab11C1	Os01g0667600	LOC_Os01g47730	tolerance	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Our results demonstrate that OsRab11C1 is a negative regulator of cold tolerance and knocking out of the gene by genome-editing may provide enhanced cold tolerance in rice
OsRab11C1	Os01g0667600	LOC_Os01g47730	cold tolerance	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Overexpression of OsRab11C1 significantly reduced CTB, while gene knockout elevated CTB as well as cold tolerance at the seedling stage, suggesting that OsRab11C1 negatively regulates rice cold tolerance
OsRab11C1	Os01g0667600	LOC_Os01g47730	cold tolerance	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Molecular analysis revealed that OsRab11C1 modulates cold tolerance by suppressing the abscisic acid signalling pathway and proline biosynthesis
OsRab11C1	Os01g0667600	LOC_Os01g47730	cold tolerance	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Using RDP II and GWAS, we identified four qCTBs that are involved in CTB and determined the function of the candidate gene OsRab11C1 in cold tolerance
OsRab11C1	Os01g0667600	LOC_Os01g47730	cold tolerance	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Our results demonstrate that OsRab11C1 is a negative regulator of cold tolerance and knocking out of the gene by genome-editing may provide enhanced cold tolerance in rice
OsRab11C1	Os01g0667600	LOC_Os01g47730	abscisic acid	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Molecular analysis revealed that OsRab11C1 modulates cold tolerance by suppressing the abscisic acid signalling pathway and proline biosynthesis
OsRab11C1	Os01g0667600	LOC_Os01g47730	cold	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Overexpression of OsRab11C1 significantly reduced CTB, while gene knockout elevated CTB as well as cold tolerance at the seedling stage, suggesting that OsRab11C1 negatively regulates rice cold tolerance
OsRab11C1	Os01g0667600	LOC_Os01g47730	cold	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Molecular analysis revealed that OsRab11C1 modulates cold tolerance by suppressing the abscisic acid signalling pathway and proline biosynthesis
OsRab11C1	Os01g0667600	LOC_Os01g47730	cold	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Using RDP II and GWAS, we identified four qCTBs that are involved in CTB and determined the function of the candidate gene OsRab11C1 in cold tolerance
OsRab11C1	Os01g0667600	LOC_Os01g47730	cold	Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.	 Our results demonstrate that OsRab11C1 is a negative regulator of cold tolerance and knocking out of the gene by genome-editing may provide enhanced cold tolerance in rice
OsRab5a|gpa1|glup4	Os12g0631100	LOC_Os12g43550	endosperm	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells	We conclude that OsRab5a plays an essential role in trafficking of storage protein to PBII, possibly as part of its function in organizing the endomembrane system in developing endosperm cells of rice
OsRab5a|gpa1|glup4	Os12g0631100	LOC_Os12g43550	endosperm	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells
OsRab5a|gpa1|glup4	Os12g0631100	LOC_Os12g43550	endosperm	The small GTPase Rab5a is essential for intracellular transport of proglutelin from the Golgi apparatus to the protein storage vacuole and endosomal membrane organization in developing rice endosperm	These results indicate that the formation of the paramural bodies in glup4 endosperm was due to a significant disruption of endocytosis and membrane vesicular transport by Rab5a loss of function
OsRab5a|gpa1|glup4	Os12g0631100	LOC_Os12g43550	endosperm	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells	Here, we report the isolation of a rice mutant, gpa1, that accumulates 57 kDa pro-glutelins in seeds and whose endosperm has a floury appearance
OsRab5a|gpa1|glup4	Os12g0631100	LOC_Os12g43550	endosperm	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells	Transmission electron microscopy analysis showed that the gpa1 endosperm cells have an enlarged ER lumen and a smaller protein body II (PBII), and accumulated three types of newly generated subcellular structures
OsRab5a|gpa1|glup4	Os12g0631100	LOC_Os12g43550	endosperm	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells	Moreover, a proportion of glutelins in the gpa1 endosperm cells were not delivered to PBII, and instead were mis-targeted to two of the newly generated structures or secreted
OsRab5a|gpa1|glup4	Os12g0631100	LOC_Os12g43550	seed	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells	Here, we report the isolation of a rice mutant, gpa1, that accumulates 57 kDa pro-glutelins in seeds and whose endosperm has a floury appearance
OsRab6a	Os03g0191400	LOC_Os03g09140	root	A Small GTPase, OsRab6a, Is Involved in the Regulation of Iron Homeostasis in Rice	These results may suggest that OsRab6a plays an important role in the regulation of Fe acquisition in rice plants by modulating physiological processes involved in Fe acquisition and root system architecture in response to Fe-deficient medium
OsRab6a	Os03g0191400	LOC_Os03g09140	seedling	A Small GTPase, OsRab6a, Is Involved in the Regulation of Iron Homeostasis in Rice	However, overexpression of OsRab6a conferred rice plants greater tolerance to Fe deficiency than RNAi and wild-type plants, as evidenced by higher seedling height, greater biomass, chlorophyll contents and Fe concentrations in shoots, roots and grains in the overexpression lines
OsRab6a	Os03g0191400	LOC_Os03g09140	tolerance	A Small GTPase, OsRab6a, Is Involved in the Regulation of Iron Homeostasis in Rice	However, overexpression of OsRab6a conferred rice plants greater tolerance to Fe deficiency than RNAi and wild-type plants, as evidenced by higher seedling height, greater biomass, chlorophyll contents and Fe concentrations in shoots, roots and grains in the overexpression lines
OsRab6a	Os03g0191400	LOC_Os03g09140	architecture	A Small GTPase, OsRab6a, Is Involved in the Regulation of Iron Homeostasis in Rice	These results may suggest that OsRab6a plays an important role in the regulation of Fe acquisition in rice plants by modulating physiological processes involved in Fe acquisition and root system architecture in response to Fe-deficient medium
OsRab6a	Os03g0191400	LOC_Os03g09140	cytoplasm	A Small GTPase, OsRab6a, Is Involved in the Regulation of Iron Homeostasis in Rice	OsRab6a shared conserved functional domains with other known members of Rab subfamily and localized ubiquitously in the cytoplasm and nuclear
OsRab6a	Os03g0191400	LOC_Os03g09140	root system architecture	A Small GTPase, OsRab6a, Is Involved in the Regulation of Iron Homeostasis in Rice	These results may suggest that OsRab6a plays an important role in the regulation of Fe acquisition in rice plants by modulating physiological processes involved in Fe acquisition and root system architecture in response to Fe-deficient medium
OsRab6a	Os03g0191400	LOC_Os03g09140	seed	A rice small GTPase, OsRab6a, is involved in the regulation of grain yield and iron nutrition in response to CO2 enrichment.	Here, we report that the OsRab6a gene encoding a small GTPase is involved in the regulation of rice growth, seed yield and iron (Fe) accumulation in response to elevated [CO2] using wild-type and transgenic rice plants of OsRab6a-overexpressing and OsRab6a-RNAi
OsRab6a	Os03g0191400	LOC_Os03g09140	photosynthesis	A rice small GTPase, OsRab6a, is involved in the regulation of grain yield and iron nutrition in response to CO2 enrichment.	By analyzing data with the Dunnett's multiple comparison test, our results suggest that OsRab6a is an important molecular regulator underlying rice adaptation to elevated [CO2] by regulating photosynthesis and Fe accumulation
OsRab6a	Os03g0191400	LOC_Os03g09140	yield	A rice small GTPase, OsRab6a, is involved in the regulation of grain yield and iron nutrition in response to CO2 enrichment.	Here, we report that the OsRab6a gene encoding a small GTPase is involved in the regulation of rice growth, seed yield and iron (Fe) accumulation in response to elevated [CO2] using wild-type and transgenic rice plants of OsRab6a-overexpressing and OsRab6a-RNAi
OsRab6a	Os03g0191400	LOC_Os03g09140	iron	A rice small GTPase, OsRab6a, is involved in the regulation of grain yield and iron nutrition in response to CO2 enrichment.	Here, we report that the OsRab6a gene encoding a small GTPase is involved in the regulation of rice growth, seed yield and iron (Fe) accumulation in response to elevated [CO2] using wild-type and transgenic rice plants of OsRab6a-overexpressing and OsRab6a-RNAi
OsRab6a	Os03g0191400	LOC_Os03g09140	Fe	A rice small GTPase, OsRab6a, is involved in the regulation of grain yield and iron nutrition in response to CO2 enrichment.	By analyzing data with the Dunnett's multiple comparison test, our results suggest that OsRab6a is an important molecular regulator underlying rice adaptation to elevated [CO2] by regulating photosynthesis and Fe accumulation
OsRab6a	Os03g0191400	LOC_Os03g09140	Fe accumulation	A rice small GTPase, OsRab6a, is involved in the regulation of grain yield and iron nutrition in response to CO2 enrichment.	By analyzing data with the Dunnett's multiple comparison test, our results suggest that OsRab6a is an important molecular regulator underlying rice adaptation to elevated [CO2] by regulating photosynthesis and Fe accumulation
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	leaf	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice	In transgenic rice overexpressing OsRab7B3, the senescence-related genes were upregulated and leaf senescence was significantly enhanced under dark conditions
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	leaf	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice	Hence it is suggested that OsRab7B3 act as a stress-inducible gene that plays an important role in the leaf senescence process
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	leaf	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	ABA	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice	Expression of sGFP under the control of the OsRab7B3 promoter increased in leaves when ABA and NaCl were applied or when kept in dark
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	senescence	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice	One of the OsRab genes, OsRab7B3, closely associated with senescence in expression pattern, was chosen for functional analysis
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	senescence	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice	In transgenic rice overexpressing OsRab7B3, the senescence-related genes were upregulated and leaf senescence was significantly enhanced under dark conditions
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	senescence	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice	Hence it is suggested that OsRab7B3 act as a stress-inducible gene that plays an important role in the leaf senescence process
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	senescence	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice	Overexpression ofOsRab7B3, a Small GTP-Binding Protein Gene, Enhances Leaf Senescence in Transgenic Rice
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	grain	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	OsRab7 overexpression also increased grain yield in rice
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	grain	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Taken together, the current study indicates that the OsRab7 gene improves grain yield and enhances drought and heat tolerance in transgenic rice by modulating osmolytes, antioxidants and abiotic stress-responsive genes expression
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	grain	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Therefore, OsRab7 gene could be exploited as a promising candidate for improving rice grain yield and stress tolerance
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	drought	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Taken together, the current study indicates that the OsRab7 gene improves grain yield and enhances drought and heat tolerance in transgenic rice by modulating osmolytes, antioxidants and abiotic stress-responsive genes expression
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	tolerance	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Taken together, the current study indicates that the OsRab7 gene improves grain yield and enhances drought and heat tolerance in transgenic rice by modulating osmolytes, antioxidants and abiotic stress-responsive genes expression
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	tolerance	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Therefore, OsRab7 gene could be exploited as a promising candidate for improving rice grain yield and stress tolerance
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	grain yield	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	OsRab7 overexpression also increased grain yield in rice
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	grain yield	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Taken together, the current study indicates that the OsRab7 gene improves grain yield and enhances drought and heat tolerance in transgenic rice by modulating osmolytes, antioxidants and abiotic stress-responsive genes expression
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	grain yield	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Therefore, OsRab7 gene could be exploited as a promising candidate for improving rice grain yield and stress tolerance
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	yield	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	OsRab7 overexpression also increased grain yield in rice
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	yield	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Taken together, the current study indicates that the OsRab7 gene improves grain yield and enhances drought and heat tolerance in transgenic rice by modulating osmolytes, antioxidants and abiotic stress-responsive genes expression
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	yield	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Therefore, OsRab7 gene could be exploited as a promising candidate for improving rice grain yield and stress tolerance
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	abiotic stress	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Taken together, the current study indicates that the OsRab7 gene improves grain yield and enhances drought and heat tolerance in transgenic rice by modulating osmolytes, antioxidants and abiotic stress-responsive genes expression
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	stress	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Therefore, OsRab7 gene could be exploited as a promising candidate for improving rice grain yield and stress tolerance
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	biotic stress	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Taken together, the current study indicates that the OsRab7 gene improves grain yield and enhances drought and heat tolerance in transgenic rice by modulating osmolytes, antioxidants and abiotic stress-responsive genes expression
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	stress tolerance	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Therefore, OsRab7 gene could be exploited as a promising candidate for improving rice grain yield and stress tolerance
OsRab7|OsRab7B3	Os05g0516600	LOC_Os05g44050	heat tolerance	Overexpression of Rice Rab7 Gene Improves Drought and Heat Tolerance and Increases Grain Yield in Rice (Oryza sativa L.).	Taken together, the current study indicates that the OsRab7 gene improves grain yield and enhances drought and heat tolerance in transgenic rice by modulating osmolytes, antioxidants and abiotic stress-responsive genes expression
OsRac1	Os01g0229400	LOC_Os01g12900	disease	Essential role of the small GTPase Rac in disease resistance of rice	Here we show that the constitutively active OsRac1 (i) causes HR-like responses and greatly reduces disease lesions against a virulent race of the rice blast fungus; (ii) causes resistance against a virulent race of bacterial blight; and (iii) causes enhanced production of a phytoalexin and alters expression of defense-related genes
OsRac1	Os01g0229400	LOC_Os01g12900	disease	Essential role of the small GTPase Rac in disease resistance of rice	Taken together, our findings strongly suggest that OsRac1 has a general role in disease resistance of rice
OsRac1	Os01g0229400	LOC_Os01g12900	defense	Gene editing a constitutively active OsRac1 by homologous recombination-based gene targeting induces immune responses in rice	The constitutively active (CA) G19V mutation of OsRac1 was previously shown to induce reactive oxygen species production, phytoalexin synthesis and defense gene activation, leading to resistance to rice blast infection
OsRac1	Os01g0229400	LOC_Os01g12900	bacterial blight	Essential role of the small GTPase Rac in disease resistance of rice	Here we show that the constitutively active OsRac1 (i) causes HR-like responses and greatly reduces disease lesions against a virulent race of the rice blast fungus; (ii) causes resistance against a virulent race of bacterial blight; and (iii) causes enhanced production of a phytoalexin and alters expression of defense-related genes
OsRac1	Os01g0229400	LOC_Os01g12900	ethylene	Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells	Proteins involved in redox regulation, chaperones such as heat shock proteins, BiP, and chaperonin 60, proteases and protease inhibitors, cytoskeletal proteins, subunits of proteasomes, and enzymes involved in the phenylpropanoid and ethylene biosynthesis pathways were found to be induced by CA-OsRac1 or SE
OsRac1	Os01g0229400	LOC_Os01g12900	defense	Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells	We have previously shown that a human small GTPase Rac homolog, OsRac1, from rice (Oryza sativa) induces cascades of defense responses in rice plants and cultured cells
OsRac1	Os01g0229400	LOC_Os01g12900	defense	Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells	Interestingly, of 100 proteins that were up-regulated by a SE, 87 were also induced by CA-OsRac1, suggesting that OsRac1 plays a pivotal role in defense responses induced by SE in cultured rice cells
OsRac1	Os01g0229400	LOC_Os01g12900	defense	Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells	Results of our proteomic analysis revealed that OsRac1 is able to induce many proteins in various signaling and metabolic pathways and plays a predominant role in the defense response in cultured rice cells
OsRac1	Os01g0229400	LOC_Os01g12900	cell death	Essential role of the small GTPase Rac in disease resistance of rice	We have previously shown that the Rac homolog of rice, OsRac1, is a regulator of ROI production and cell death in rice
OsRac1	Os01g0229400	LOC_Os01g12900	defense	Essential role of the small GTPase Rac in disease resistance of rice	Here we show that the constitutively active OsRac1 (i) causes HR-like responses and greatly reduces disease lesions against a virulent race of the rice blast fungus; (ii) causes resistance against a virulent race of bacterial blight; and (iii) causes enhanced production of a phytoalexin and alters expression of defense-related genes
OsRac1	Os01g0229400	LOC_Os01g12900	blast	Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice	We found that the expression of a metallothionein gene (OsMT2b) was synergically down-regulated by OsRac1 and rice (Oryza sativa) blast-derived elicitors
OsRac1	Os01g0229400	LOC_Os01g12900	magnaporthe oryzae	Gene editing a constitutively active OsRac1 by homologous recombination-based gene targeting induces immune responses in rice	In the CA-gOsRac1 plants, a number of genes previously shown to be induced by Magnaporthe oryzae and Xanthomonas oryzae pv
OsRac1	Os01g0229400	LOC_Os01g12900	defense	The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice	Expression of the constitutively active OsRac1, a small GTPase Rac of rice, in d1 mutants restored SE-dependent defense signaling and resistance to rice blast
OsRac1	Os01g0229400	LOC_Os01g12900	defense	The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice	We have proposed a model for the defense signaling of rice in which the heterotrimeric G protein functions upstream of the small GTPase OsRac1 in the early steps of signaling
OsRac1	Os01g0229400	LOC_Os01g12900	resistant	Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice	To study the precise localization of OsRac1 in the PM and its possible association with other signaling components, we performed proteomic analysis of DRMs (detergent-resistant membranes) isolated from rice suspension-cultured cells transformed with myc-tagged constitutively active (CA) OsRac1
OsRac1	Os01g0229400	LOC_Os01g12900	resistant	Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice	Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice
OsRac1	Os01g0229400	LOC_Os01g12900	blast	Gene editing a constitutively active OsRac1 by homologous recombination-based gene targeting induces immune responses in rice	The constitutively active (CA) G19V mutation of OsRac1 was previously shown to induce reactive oxygen species production, phytoalexin synthesis and defense gene activation, leading to resistance to rice blast infection
OsRac1	Os01g0229400	LOC_Os01g12900	cell death	The small GTP-binding protein Rac is a regulator of cell death in plants	We introduced the constitutively active and the dominant negative forms of the small GTP-binding protein OsRac1, a rice homolog of human Rac, into the wild type and a lesion mimic mutant of rice and analyzed H(2)O(2) production and cell death in transformed cell cultures and plants
OsRac1	Os01g0229400	LOC_Os01g12900	disease resistance	Essential role of the small GTPase Rac in disease resistance of rice	Taken together, our findings strongly suggest that OsRac1 has a general role in disease resistance of rice
OsRac1	Os01g0229400	LOC_Os01g12900	blight	Essential role of the small GTPase Rac in disease resistance of rice	Here we show that the constitutively active OsRac1 (i) causes HR-like responses and greatly reduces disease lesions against a virulent race of the rice blast fungus; (ii) causes resistance against a virulent race of bacterial blight; and (iii) causes enhanced production of a phytoalexin and alters expression of defense-related genes
OsRac1	Os01g0229400	LOC_Os01g12900	blast	Essential role of the small GTPase Rac in disease resistance of rice	Here we show that the constitutively active OsRac1 (i) causes HR-like responses and greatly reduces disease lesions against a virulent race of the rice blast fungus; (ii) causes resistance against a virulent race of bacterial blight; and (iii) causes enhanced production of a phytoalexin and alters expression of defense-related genes
OsRac1	Os01g0229400	LOC_Os01g12900	defense response	Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells	We have previously shown that a human small GTPase Rac homolog, OsRac1, from rice (Oryza sativa) induces cascades of defense responses in rice plants and cultured cells
OsRac1	Os01g0229400	LOC_Os01g12900	defense response	Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells	Interestingly, of 100 proteins that were up-regulated by a SE, 87 were also induced by CA-OsRac1, suggesting that OsRac1 plays a pivotal role in defense responses induced by SE in cultured rice cells
OsRac1	Os01g0229400	LOC_Os01g12900	defense response	Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells	Results of our proteomic analysis revealed that OsRac1 is able to induce many proteins in various signaling and metabolic pathways and plays a predominant role in the defense response in cultured rice cells
OsRac1	Os01g0229400	LOC_Os01g12900	defense	Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice	OsRac1, one of the Rac/Rop family of small GTPases, plays important roles in defense responses, including a role in the production of reactive oxygen species mediated by NADPH oxidase
OsRac1	Os01g0229400	LOC_Os01g12900	defense	Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice	Thus, it is likely that OsRac1 controls lignin synthesis through regulation of both NADPH oxidase and OsCCR1 activities during defense responses in rice
OsRac1	Os01g0229400	LOC_Os01g12900	defense response	Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice	OsRac1, one of the Rac/Rop family of small GTPases, plays important roles in defense responses, including a role in the production of reactive oxygen species mediated by NADPH oxidase
OsRac1	Os01g0229400	LOC_Os01g12900	defense response	Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice	Thus, it is likely that OsRac1 controls lignin synthesis through regulation of both NADPH oxidase and OsCCR1 activities during defense responses in rice
OsRac1	Os01g0229400	LOC_Os01g12900	leaf	Gene editing a constitutively active OsRac1 by homologous recombination-based gene targeting induces immune responses in rice	In the leaf blade of homozygous CA-gOsRac1 plants, mutant transcript levels were much lower than in those of wild-type plants
OsRac1	Os01g0229400	LOC_Os01g12900	blast	The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice	Expression of the constitutively active OsRac1, a small GTPase Rac of rice, in d1 mutants restored SE-dependent defense signaling and resistance to rice blast
OsRac1	Os01g0229400	LOC_Os01g12900	defence	In vivo monitoring of plant small GTPase activation using a F<U+00F6>rster resonance energy transfer biosensor.	We have established a plant version of a F<U+00F6>rster resonance energy transfer (FRET) probe called Ras and interacting protein chimeric unit (Raichu) that can successfully monitor activation of the rice small GTPase OsRac1 during various defence responses in cells
OsRac1	Os01g0229400	LOC_Os01g12900	defence response	In vivo monitoring of plant small GTPase activation using a F<U+00F6>rster resonance energy transfer biosensor.	We have established a plant version of a F<U+00F6>rster resonance energy transfer (FRET) probe called Ras and interacting protein chimeric unit (Raichu) that can successfully monitor activation of the rice small GTPase OsRac1 during various defence responses in cells
OsRac1	Os01g0229400	LOC_Os01g12900	resistance	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.
OsRac1	Os01g0229400	LOC_Os01g12900	resistance	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	We also identified RAI1, a transcriptional activator, as a PID3 interactor required for PID3-mediated blast resistance and showed that RAI1 expression is induced by PID3 via a process mediated by OsRac1
OsRac1	Os01g0229400	LOC_Os01g12900	resistance	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	This study describes a new signalling pathway for NLR protein-mediated blast resistance and shows that OsRac1 and RAI1 act together to play a critical role in this process
OsRac1	Os01g0229400	LOC_Os01g12900	blast	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.
OsRac1	Os01g0229400	LOC_Os01g12900	blast	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	We identified OsRac1, a known GTPase, as a signaling molecule in PID3-mediated blast resistance, implicating OsRac1 as a possible common factor downstream of rice NLR proteins
OsRac1	Os01g0229400	LOC_Os01g12900	blast	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	We also identified RAI1, a transcriptional activator, as a PID3 interactor required for PID3-mediated blast resistance and showed that RAI1 expression is induced by PID3 via a process mediated by OsRac1
OsRac1	Os01g0229400	LOC_Os01g12900	blast	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	This study describes a new signalling pathway for NLR protein-mediated blast resistance and shows that OsRac1 and RAI1 act together to play a critical role in this process
OsRac1	Os01g0229400	LOC_Os01g12900	R protein	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.
OsRac1	Os01g0229400	LOC_Os01g12900	R protein	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	We identified OsRac1, a known GTPase, as a signaling molecule in PID3-mediated blast resistance, implicating OsRac1 as a possible common factor downstream of rice NLR proteins
OsRac1	Os01g0229400	LOC_Os01g12900	R protein	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	This study describes a new signalling pathway for NLR protein-mediated blast resistance and shows that OsRac1 and RAI1 act together to play a critical role in this process
OsRac1	Os01g0229400	LOC_Os01g12900	blast resistance	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	We identified OsRac1, a known GTPase, as a signaling molecule in PID3-mediated blast resistance, implicating OsRac1 as a possible common factor downstream of rice NLR proteins
OsRac1	Os01g0229400	LOC_Os01g12900	blast resistance	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	We also identified RAI1, a transcriptional activator, as a PID3 interactor required for PID3-mediated blast resistance and showed that RAI1 expression is induced by PID3 via a process mediated by OsRac1
OsRac1	Os01g0229400	LOC_Os01g12900	blast resistance	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	This study describes a new signalling pathway for NLR protein-mediated blast resistance and shows that OsRac1 and RAI1 act together to play a critical role in this process
OsRac1	Os01g0229400	LOC_Os01g12900	transcriptional activator	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	We also identified RAI1, a transcriptional activator, as a PID3 interactor required for PID3-mediated blast resistance and showed that RAI1 expression is induced by PID3 via a process mediated by OsRac1
OsRac1	Os01g0229400	LOC_Os01g12900	blast disease	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.	Importance of OsRac1 and RAI1 in signalling of NLR protein-mediated resistance to rice blast disease.
OsRac1	Os01g0229400	LOC_Os01g12900	grain	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.
OsRac1	Os01g0229400	LOC_Os01g12900	grain	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	As a result, OsRac1 overexpression improves grain yield in O
OsRac1	Os01g0229400	LOC_Os01g12900	grain	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	Interestingly, OsRac1 interacts with and regulates the phosphorylation level of OsMAPK6, which is known to regulate cell division and grain size in rice
OsRac1	Os01g0229400	LOC_Os01g12900	grain	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	Thus, our findings suggest OsRac1 modulates rice grain size and yield by influencing cell division
OsRac1	Os01g0229400	LOC_Os01g12900	grain	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	This study provides insights into the molecular mechanisms underlying the control of rice grain size and suggests that OsRac1 could serve as a potential target gene for breeding high-yield crops
OsRac1	Os01g0229400	LOC_Os01g12900	grain yield	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	As a result, OsRac1 overexpression improves grain yield in O
OsRac1	Os01g0229400	LOC_Os01g12900	yield	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.
OsRac1	Os01g0229400	LOC_Os01g12900	yield	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	As a result, OsRac1 overexpression improves grain yield in O
OsRac1	Os01g0229400	LOC_Os01g12900	yield	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	Thus, our findings suggest OsRac1 modulates rice grain size and yield by influencing cell division
OsRac1	Os01g0229400	LOC_Os01g12900	grain size	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.
OsRac1	Os01g0229400	LOC_Os01g12900	grain size	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	Interestingly, OsRac1 interacts with and regulates the phosphorylation level of OsMAPK6, which is known to regulate cell division and grain size in rice
OsRac1	Os01g0229400	LOC_Os01g12900	grain size	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	Thus, our findings suggest OsRac1 modulates rice grain size and yield by influencing cell division
OsRac1	Os01g0229400	LOC_Os01g12900	grain size	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	This study provides insights into the molecular mechanisms underlying the control of rice grain size and suggests that OsRac1 could serve as a potential target gene for breeding high-yield crops
OsRac1	Os01g0229400	LOC_Os01g12900	cell division	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.
OsRac1	Os01g0229400	LOC_Os01g12900	cell division	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	RNA-seq and cell cycle analyses suggest that OsRac1 promotes cell division
OsRac1	Os01g0229400	LOC_Os01g12900	cell division	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	Interestingly, OsRac1 interacts with and regulates the phosphorylation level of OsMAPK6, which is known to regulate cell division and grain size in rice
OsRac1	Os01g0229400	LOC_Os01g12900	cell division	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	Thus, our findings suggest OsRac1 modulates rice grain size and yield by influencing cell division
OsRac1	Os01g0229400	LOC_Os01g12900	cell cycle	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	RNA-seq and cell cycle analyses suggest that OsRac1 promotes cell division
OsRac1	Os01g0229400	LOC_Os01g12900	breeding	The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division.	This study provides insights into the molecular mechanisms underlying the control of rice grain size and suggests that OsRac1 could serve as a potential target gene for breeding high-yield crops
OsRac1	Os01g0229400	LOC_Os01g12900	blast	The Small GTPase OsRac1 Forms Two Distinct Immune Receptor Complexes Containing the PRR OsCERK1 and the NLR Pit	We have previously found that the small GTPase OsRac1 plays key roles in the signaling of OsCERK1, a PRR for fungal chitin, and of Pit, an NLR for rice blast fungus, and associates directly and indirectly with both of these immune receptors
OsRac1	Os01g0229400	LOC_Os01g12900	immunity	The Small GTPase OsRac1 Forms Two Distinct Immune Receptor Complexes Containing the PRR OsCERK1 and the NLR Pit	These findings illuminate how the PRR OsCERK1 and the NLR Pit orchestrate rice immunity through the small GTPase OsRac1
OsRacB	Os02g0120800	LOC_Os02g02840	root	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	Results show that OsRacB transcription is highly accumulated in roots after treatment with salinity, but only slightly accumulated in stems and leaves under the same treatment
OsRacB	Os02g0120800	LOC_Os02g02840	stem	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	Results show that OsRacB transcription is highly accumulated in roots after treatment with salinity, but only slightly accumulated in stems and leaves under the same treatment
OsRacB	Os02g0120800	LOC_Os02g02840	blast	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	A dramatic down-regulation in the OsRacB transcripts was also found in plants inoculated with the blast pathogen, Magnaporthe grisea
OsRacB	Os02g0120800	LOC_Os02g02840	blast	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	Interestingly, transgenic rice plants over-expressing OsRacB showed increased symptom development in response to rice blast pathogens
OsRacB	Os02g0120800	LOC_Os02g02840	salt	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	In this study, we focus on the relationship between the novel rice Rop gene OsRacB and plant salt tolerance
OsRacB	Os02g0120800	LOC_Os02g02840	salt	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	This suggests that overexpression of OsRacB in tobacco and rice can improve plant salt tolerance
OsRacB	Os02g0120800	LOC_Os02g02840	salt	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	The results indicated that OsRacB is only an accessory factor in plant salt tolerance
OsRacB	Os02g0120800	LOC_Os02g02840	salt	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling
OsRacB	Os02g0120800	LOC_Os02g02840	salinity	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	Results show that OsRacB transcription is highly accumulated in roots after treatment with salinity, but only slightly accumulated in stems and leaves under the same treatment
OsRacB	Os02g0120800	LOC_Os02g02840	salinity	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	Promoter analysis showed that OsRacB promoter is induced by salinity and exogenous salicylic acid, not abscisic acid
OsRacB	Os02g0120800	LOC_Os02g02840	jasmonic	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	The basal mRNA level of OsRacB in LS of two-week-old seedlings was strongly down-regulated upon wounding by cut and treatment with jasmonic acid
OsRacB	Os02g0120800	LOC_Os02g02840	jasmonic acid	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	The basal mRNA level of OsRacB in LS of two-week-old seedlings was strongly down-regulated upon wounding by cut and treatment with jasmonic acid
OsRacB	Os02g0120800	LOC_Os02g02840	salt tolerance	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	In this study, we focus on the relationship between the novel rice Rop gene OsRacB and plant salt tolerance
OsRacB	Os02g0120800	LOC_Os02g02840	salt tolerance	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	This suggests that overexpression of OsRacB in tobacco and rice can improve plant salt tolerance
OsRacB	Os02g0120800	LOC_Os02g02840	salt tolerance	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	The results indicated that OsRacB is only an accessory factor in plant salt tolerance
OsRacB	Os02g0120800	LOC_Os02g02840	salicylic acid	Rice GTPase OsRacB: Potential Accessory Factor in Plant Salt-stress Signaling	Promoter analysis showed that OsRacB promoter is induced by salinity and exogenous salicylic acid, not abscisic acid
OsRacB	Os02g0120800	LOC_Os02g02840	disease	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	To our interest in finding a negative ROP regulator of disease resistance in rice, we applied a phylogeny of function approach to rice Rops, and identified OsRacB based on its close genetic orthologous relationship with the barley HvRacB gene, a known negative regulator of disease resistance
OsRacB	Os02g0120800	LOC_Os02g02840	disease	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	Based on these results, we suggest that OsRacB functions as a potential regulator for a basal disease resistance pathway in rice
OsRacB	Os02g0120800	LOC_Os02g02840	disease	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice
OsRacB	Os02g0120800	LOC_Os02g02840	disease resistance	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	To our interest in finding a negative ROP regulator of disease resistance in rice, we applied a phylogeny of function approach to rice Rops, and identified OsRacB based on its close genetic orthologous relationship with the barley HvRacB gene, a known negative regulator of disease resistance
OsRacB	Os02g0120800	LOC_Os02g02840	disease resistance	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	Based on these results, we suggest that OsRacB functions as a potential regulator for a basal disease resistance pathway in rice
OsRacB	Os02g0120800	LOC_Os02g02840	disease resistance	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice
OsRacB	Os02g0120800	LOC_Os02g02840	seedling	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice	The basal mRNA level of OsRacB in LS of two-week-old seedlings was strongly down-regulated upon wounding by cut and treatment with jasmonic acid
OsRacB	Os02g0120800	LOC_Os02g02840	development	A small Rho GTPase OsRacB is required for pollen germination in rice.	The knockout mutants were normal in anther and pollen development but defective in the pollen grain germination, suggesting a specific and non-redundant role of OsRacB in the mature pollen
OsRacB	Os02g0120800	LOC_Os02g02840	pollen	A small Rho GTPase OsRacB is required for pollen germination in rice.	A small Rho GTPase OsRacB is required for pollen germination in rice.
OsRacB	Os02g0120800	LOC_Os02g02840	pollen	A small Rho GTPase OsRacB is required for pollen germination in rice.	The knockout mutants were normal in anther and pollen development but defective in the pollen grain germination, suggesting a specific and non-redundant role of OsRacB in the mature pollen
OsRacB	Os02g0120800	LOC_Os02g02840	pollen	A small Rho GTPase OsRacB is required for pollen germination in rice.	We further demonstrated that OsRacB is directly activated by the pollen specific expressing OsRopGEFs in vitro
OsRacB	Os02g0120800	LOC_Os02g02840	grain	A small Rho GTPase OsRacB is required for pollen germination in rice.	The knockout mutants were normal in anther and pollen development but defective in the pollen grain germination, suggesting a specific and non-redundant role of OsRacB in the mature pollen
OsRacB	Os02g0120800	LOC_Os02g02840	anther	A small Rho GTPase OsRacB is required for pollen germination in rice.	The knockout mutants were normal in anther and pollen development but defective in the pollen grain germination, suggesting a specific and non-redundant role of OsRacB in the mature pollen
OsRacB	Os02g0120800	LOC_Os02g02840	pollen development	A small Rho GTPase OsRacB is required for pollen germination in rice.	The knockout mutants were normal in anther and pollen development but defective in the pollen grain germination, suggesting a specific and non-redundant role of OsRacB in the mature pollen
OsRacD|OsRac5	Os02g0834000	LOC_Os02g58730	sterility	Isolation of osRACD gene encoding a small GTP-binding protein from rice	Evidence from RT-PCR study indicates that osRACD gene is related to photoperiod fertility conversion of photoperiod sensitive genic male sterility (PSGMS) rice
OsRacD|OsRac5	Os02g0834000	LOC_Os02g58730	fertility	Isolation and characterization of OsMY1, a putative partner of OsRac5 from Oryza sativa L	OsRac5 belongs to the rice Rho of plants family, and acts as the molecular switch in the signal pathway which is pivotally involved in the rice fertility control
OsRacD|OsRac5	Os02g0834000	LOC_Os02g58730	growth	Isolation and characterization of OsMY1, a putative partner of OsRac5 from Oryza sativa L	Our results suggest that OsMY1 is an important target of OsRac5 and that these two genes are involved in the same biological processes in rice growth and development
OsRacD|OsRac5	Os02g0834000	LOC_Os02g58730	panicle	Isolation and characterization of OsMY1, a putative partner of OsRac5 from Oryza sativa L	Real-time PCR shows that OsMY1 and OsRac5 are coordinately expressed in rice leaves and panicles with similar expression patterns
OsRacD|OsRac5	Os02g0834000	LOC_Os02g58730	fertility	Structural analysis and identification of cis-elements of rice osRACD gene	The osRACD gene correlated with fertility transformation in the photoperiod sensitive genic male sterile rice (PGMR), Nongken 58S, encoded a rice (Oryza sativa L
OsRacD|OsRac5	Os02g0834000	LOC_Os02g58730	sterile	Structural analysis and identification of cis-elements of rice osRACD gene	The osRACD gene correlated with fertility transformation in the photoperiod sensitive genic male sterile rice (PGMR), Nongken 58S, encoded a rice (Oryza sativa L
OsRacD|OsRac5	Os02g0834000	LOC_Os02g58730	panicle	Isolation of osRACD gene encoding a small GTP-binding protein from rice	By screening cDNA library of the rice Nongken 58N panicle using the newly obtained fragment RDP-8 as probe, we further found the full-length cDNA of osRACD gene that encodes a rice small GTP-binding protein
OsRacD|OsRac5	Os02g0834000	LOC_Os02g58730	fertility	Isolation of osRACD gene encoding a small GTP-binding protein from rice	Evidence from RT-PCR study indicates that osRACD gene is related to photoperiod fertility conversion of photoperiod sensitive genic male sterility (PSGMS) rice
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	resistance	An OsCEBiP/OsCERK1-OsRacGEF1-OsRac1 module is an essential early component of chitin-induced rice immunity.	Activated OsRacGEF1 is required for chitin-driven immune responses and resistance to rice blast fungus infection
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	blast	An OsCEBiP/OsCERK1-OsRacGEF1-OsRac1 module is an essential early component of chitin-induced rice immunity.	Activated OsRacGEF1 is required for chitin-driven immune responses and resistance to rice blast fungus infection
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	immune response	An OsCEBiP/OsCERK1-OsRacGEF1-OsRac1 module is an essential early component of chitin-induced rice immunity.	Activated OsRacGEF1 is required for chitin-driven immune responses and resistance to rice blast fungus infection
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	plasma membrane	New insights into the dimerization of small GTPase Rac/ROP guanine nucleotide exchange factors in rice.	Here, we show that rice OsRacGEF1 forms homodimers, and heterodimers with OsRacGEF2, at the plasma membrane (PM) and the endoplasmic reticulum (ER)
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	Kinase	New insights into the dimerization of small GTPase Rac/ROP guanine nucleotide exchange factors in rice.	OsRacGEF2 does not bind directly to the receptor-like kinase (RLK) OsCERK1, but forms a complex with OsCERK1 through OsRacGEF1 at the ER
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	Kinase	Crosstalk of Signaling Mechanisms Involved in Host Defense and Symbiosis Against Microorganisms in Rice.	In chitin signaling in rice, two direct substrates of OsCERK1, Rac/ROP GTPase guanine nucleotide exchange factor OsRacGEF1 and receptor-like cytoplasmic kinase OsRLCK185, have been identified as components of the OsCERK1 complex and are rapidly phosphorylated by OsCERK1 in response to chitin
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	chitin signaling	Crosstalk of Signaling Mechanisms Involved in Host Defense and Symbiosis Against Microorganisms in Rice.	In chitin signaling in rice, two direct substrates of OsCERK1, Rac/ROP GTPase guanine nucleotide exchange factor OsRacGEF1 and receptor-like cytoplasmic kinase OsRLCK185, have been identified as components of the OsCERK1 complex and are rapidly phosphorylated by OsCERK1 in response to chitin
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	growth	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	Knock-out and -down of OsRopGEF7B by T-DNA insertion and RNA interference, respectively, predominantly caused an increase in the number of floral organs in the inner whorls (stamen and ovary), as well as abnormal paleae/lemmas and ectopic growth of lodicules, resulting in decline of rice seed setting
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	seed	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	Knock-out and -down of OsRopGEF7B by T-DNA insertion and RNA interference, respectively, predominantly caused an increase in the number of floral organs in the inner whorls (stamen and ovary), as well as abnormal paleae/lemmas and ectopic growth of lodicules, resulting in decline of rice seed setting
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	seed	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	OsRopGEF7B plays roles in floral organ development in rice, affecting rice seed setting rate
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	floral	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	OsRopGEF7Bpro:GUS analysis indicates that OsRopGEF7B is expressed in various tissues, especially in the floral meristem and floral organ primordia
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	floral	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	Knock-out and -down of OsRopGEF7B by T-DNA insertion and RNA interference, respectively, predominantly caused an increase in the number of floral organs in the inner whorls (stamen and ovary), as well as abnormal paleae/lemmas and ectopic growth of lodicules, resulting in decline of rice seed setting
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	floral	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	OsRopGEF7B plays roles in floral organ development in rice, affecting rice seed setting rate
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	meristem	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	OsRopGEF7Bpro:GUS analysis indicates that OsRopGEF7B is expressed in various tissues, especially in the floral meristem and floral organ primordia
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	floral meristem	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	OsRopGEF7Bpro:GUS analysis indicates that OsRopGEF7B is expressed in various tissues, especially in the floral meristem and floral organ primordia
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	floral organ	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	OsRopGEF7Bpro:GUS analysis indicates that OsRopGEF7B is expressed in various tissues, especially in the floral meristem and floral organ primordia
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	floral organ	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	Knock-out and -down of OsRopGEF7B by T-DNA insertion and RNA interference, respectively, predominantly caused an increase in the number of floral organs in the inner whorls (stamen and ovary), as well as abnormal paleae/lemmas and ectopic growth of lodicules, resulting in decline of rice seed setting
OsRacGEF1|OsRopGEF7B	Os01g0849100	LOC_Os01g62990	floral organ	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	OsRopGEF7B plays roles in floral organ development in rice, affecting rice seed setting rate
OsRacGEF2	Os09g0544800	LOC_Os09g37270	Kinase	New insights into the dimerization of small GTPase Rac/ROP guanine nucleotide exchange factors in rice.	OsRacGEF2 does not bind directly to the receptor-like kinase (RLK) OsCERK1, but forms a complex with OsCERK1 through OsRacGEF1 at the ER
OsRACK1A	Os01g0686800	LOC_Os01g49290	salt	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 OsRACK1A was found to follow a rhythmic expression profile under circadian conditions at both the transcription and the translation levels, although the expression was arrhythmic under salt stress
OsRACK1A	Os01g0686800	LOC_Os01g49290	salt	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 Analysis of plant survival rates, fresh weight, proline content, malondialdehyde, and chlorophyll showed that suppression of OsRACK1A enhanced tolerance to salt stress
OsRACK1A	Os01g0686800	LOC_Os01g49290	salt	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 We identified putative interactors of OsRACK1A, and found that OsRACK1A interacted with many salt stress-responsive proteins directly
OsRACK1A	Os01g0686800	LOC_Os01g49290	salt	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 These results suggest that OsRACK1A is regulated by circadian rhythm, and involved in the regulation of salt stress responses
OsRACK1A	Os01g0686800	LOC_Os01g49290	tolerance	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 Analysis of plant survival rates, fresh weight, proline content, malondialdehyde, and chlorophyll showed that suppression of OsRACK1A enhanced tolerance to salt stress
OsRACK1A	Os01g0686800	LOC_Os01g49290	salt stress	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 OsRACK1A was found to follow a rhythmic expression profile under circadian conditions at both the transcription and the translation levels, although the expression was arrhythmic under salt stress
OsRACK1A	Os01g0686800	LOC_Os01g49290	salt stress	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 Analysis of plant survival rates, fresh weight, proline content, malondialdehyde, and chlorophyll showed that suppression of OsRACK1A enhanced tolerance to salt stress
OsRACK1A	Os01g0686800	LOC_Os01g49290	salt stress	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 We identified putative interactors of OsRACK1A, and found that OsRACK1A interacted with many salt stress-responsive proteins directly
OsRACK1A	Os01g0686800	LOC_Os01g49290	salt stress	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 These results suggest that OsRACK1A is regulated by circadian rhythm, and involved in the regulation of salt stress responses
OsRACK1A	Os01g0686800	LOC_Os01g49290	stress	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 OsRACK1A was found to follow a rhythmic expression profile under circadian conditions at both the transcription and the translation levels, although the expression was arrhythmic under salt stress
OsRACK1A	Os01g0686800	LOC_Os01g49290	stress	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 Analysis of plant survival rates, fresh weight, proline content, malondialdehyde, and chlorophyll showed that suppression of OsRACK1A enhanced tolerance to salt stress
OsRACK1A	Os01g0686800	LOC_Os01g49290	stress	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 These results suggest that OsRACK1A is regulated by circadian rhythm, and involved in the regulation of salt stress responses
OsRACK1A	Os01g0686800	LOC_Os01g49290	stress response	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	 These results suggest that OsRACK1A is regulated by circadian rhythm, and involved in the regulation of salt stress responses
OsRACK1A	Os01g0686800	LOC_Os01g49290	resistance	Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty.	 Although the analysis of natural variation revealed no OsRACK1A variants that could avoid being targeted by UvCBP1, expression levels of OsRACK1A are correlated with field resistance against U
OsRACK1A	Os01g0686800	LOC_Os01g49290	resistance	Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty.	 Overproduction of OsRACK1A restores the OsRACK1A-OsRBOHB association and promotes OsRBOHB phosphorylation to enhance ROS production, conferring rice floral resistance to U
OsRACK1A	Os01g0686800	LOC_Os01g49290	floral	Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty.	 Overproduction of OsRACK1A restores the OsRACK1A-OsRBOHB association and promotes OsRBOHB phosphorylation to enhance ROS production, conferring rice floral resistance to U
OsRACK1A	Os01g0686800	LOC_Os01g49290	reactive oxygen species	Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty.	 Mechanistically, UvCBP1 interacts with the rice scaffold protein OsRACK1A and competes its interaction with the reduced nicotinamide adenine dinucleotide phosphate oxidase OsRBOHB, leading to inhibition of reactive oxygen species (ROS) production
OsRACK1A	Os01g0686800	LOC_Os01g49290	phosphate	Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty.	 Mechanistically, UvCBP1 interacts with the rice scaffold protein OsRACK1A and competes its interaction with the reduced nicotinamide adenine dinucleotide phosphate oxidase OsRBOHB, leading to inhibition of reactive oxygen species (ROS) production
OsRAD1	Os06g0132600	LOC_Os06g04190	meiosis	The endonuclease homolog OsRAD1 promotes accurate meiotic double-strand break repair by suppressing non-homologous end joining.	In addition, OsRAD1 interacts directly with OsHUS1 and OsRAD9, suggesting that these proteins act as a complex to promote DSB repair during rice meiosis
OsRAD1	Os06g0132600	LOC_Os06g04190	meiotic	The endonuclease homolog OsRAD1 promotes accurate meiotic double-strand break repair by suppressing non-homologous end joining.	The endonuclease homolog OsRAD1 promotes accurate meiotic double-strand break repair by suppressing non-homologous end joining.
OsRAD1	Os06g0132600	LOC_Os06g04190	meiotic	The endonuclease homolog OsRAD1 promotes accurate meiotic double-strand break repair by suppressing non-homologous end joining.	Here, we characterized a RAD1 homolog in rice (Oryza sativa) and obtained evidence that OsRAD1 is important for meiotic DSB repair
OsRAD17	Os03g0242100	LOC_Os03g13850	pollen	OsRAD17 Is Required for Meiotic Double-Strand Break Repair and Plays a Redundant Role With OsZIP4 in Synaptonemal Complex Assembly.	In Osrad17 pollen mother cells (PMCs), associations between non-homologous chromosomes and chromosome fragmentation were constantly observed
OsRAD17	Os03g0242100	LOC_Os03g13850	meiotic	OsRAD17 Is Required for Meiotic Double-Strand Break Repair and Plays a Redundant Role With OsZIP4 in Synaptonemal Complex Assembly.	OsRAD17 Is Required for Meiotic Double-Strand Break Repair and Plays a Redundant Role With OsZIP4 in Synaptonemal Complex Assembly.
OsRAD17	Os03g0242100	LOC_Os03g13850	meiotic	OsRAD17 Is Required for Meiotic Double-Strand Break Repair and Plays a Redundant Role With OsZIP4 in Synaptonemal Complex Assembly.	OsRAD17 interacts with OsRAD1 and the meiotic phenotype of Osrad1 Osrad17 is indistinguishable from the two single mutants which have similar phenotypes, manifesting they could act in the same pathway
OsRAD21-2	Os04g0488100	LOC_Os04g41110	leaf	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Further RNA in situ hybridization analysis and promoter::beta-glucuronidase staining indicated that OsRAD21-2 was mainly expressed in actively dividing tissues including premeiotic stamen, stem intercalary meristem, leaf meristem, and root pericycle
OsRAD21-2	Os04g0488100	LOC_Os04g41110	growth	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Ectopic expression of OsRAD21-2 in fission yeast resulted in cell growth delay and morphological abnormality
OsRAD21-2	Os04g0488100	LOC_Os04g41110	growth	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Our results suggest that OsRad21-2 functions in regulation of cell division and growth
OsRAD21-2	Os04g0488100	LOC_Os04g41110	growth	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth
OsRAD21-2	Os04g0488100	LOC_Os04g41110	intercalary meristem	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Further RNA in situ hybridization analysis and promoter::beta-glucuronidase staining indicated that OsRAD21-2 was mainly expressed in actively dividing tissues including premeiotic stamen, stem intercalary meristem, leaf meristem, and root pericycle
OsRAD21-2	Os04g0488100	LOC_Os04g41110	flower	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Semi-quantitative reverse transcription-polymerase chain reaction revealed OsRAD21-2 preferentially expressed in premeiotic flowers
OsRAD21-2	Os04g0488100	LOC_Os04g41110	stem	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Further RNA in situ hybridization analysis and promoter::beta-glucuronidase staining indicated that OsRAD21-2 was mainly expressed in actively dividing tissues including premeiotic stamen, stem intercalary meristem, leaf meristem, and root pericycle
OsRAD21-2	Os04g0488100	LOC_Os04g41110	cell division	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Our results suggest that OsRad21-2 functions in regulation of cell division and growth
OsRAD21-2	Os04g0488100	LOC_Os04g41110	cell division	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth
OsRAD21-2	Os04g0488100	LOC_Os04g41110	meiotic	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Semi-quantitative reverse transcription-polymerase chain reaction revealed OsRAD21-2 preferentially expressed in premeiotic flowers
OsRAD21-2	Os04g0488100	LOC_Os04g41110	meiotic	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Further RNA in situ hybridization analysis and promoter::beta-glucuronidase staining indicated that OsRAD21-2 was mainly expressed in actively dividing tissues including premeiotic stamen, stem intercalary meristem, leaf meristem, and root pericycle
OsRAD21-2	Os04g0488100	LOC_Os04g41110	root	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Further RNA in situ hybridization analysis and promoter::beta-glucuronidase staining indicated that OsRAD21-2 was mainly expressed in actively dividing tissues including premeiotic stamen, stem intercalary meristem, leaf meristem, and root pericycle
OsRAD21-2	Os04g0488100	LOC_Os04g41110	meristem	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Further RNA in situ hybridization analysis and promoter::beta-glucuronidase staining indicated that OsRAD21-2 was mainly expressed in actively dividing tissues including premeiotic stamen, stem intercalary meristem, leaf meristem, and root pericycle
OsRAD21-2	Os04g0488100	LOC_Os04g41110	stamen	Rice OsRAD21-2 is expressed in actively dividing tissues and its ectopic expression in yeast results in aberrant cell division and growth	Further RNA in situ hybridization analysis and promoter::beta-glucuronidase staining indicated that OsRAD21-2 was mainly expressed in actively dividing tissues including premeiotic stamen, stem intercalary meristem, leaf meristem, and root pericycle
OsRAD21-3	Os08g0266700	LOC_Os08g16610	pollen	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	OsRAD21-3-deficient RNAi lines showed arrested pollen mitosis, aberrant pollen chromosome segregation and aborted pollen grains, which led to disrupted pollen viability
OsRAD21-3	Os08g0266700	LOC_Os08g16610	pollen	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	However, male meiosis in these RNAi lines did not appear to be severely disrupted, which suggests that the main involvement of OsRAD21-3 is in post-meiotic pollen development by affecting pollen mitosis
OsRAD21-3	Os08g0266700	LOC_Os08g16610	pollen	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	Furthermore, of the four OsRAD21 genes in the rice genome, only OsRAD21-3 was expressed in pollen grains
OsRAD21-3	Os08g0266700	LOC_Os08g16610	pollen	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa
OsRAD21-3	Os08g0266700	LOC_Os08g16610	meiotic	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	However, male meiosis in these RNAi lines did not appear to be severely disrupted, which suggests that the main involvement of OsRAD21-3 is in post-meiotic pollen development by affecting pollen mitosis
OsRAD21-3	Os08g0266700	LOC_Os08g16610	meiosis	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	However, male meiosis in these RNAi lines did not appear to be severely disrupted, which suggests that the main involvement of OsRAD21-3 is in post-meiotic pollen development by affecting pollen mitosis
OsRAD21-3	Os08g0266700	LOC_Os08g16610	grain	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	OsRAD21-3-deficient RNAi lines showed arrested pollen mitosis, aberrant pollen chromosome segregation and aborted pollen grains, which led to disrupted pollen viability
OsRAD21-3	Os08g0266700	LOC_Os08g16610	grain	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	Furthermore, of the four OsRAD21 genes in the rice genome, only OsRAD21-3 was expressed in pollen grains
OsRAD21-3	Os08g0266700	LOC_Os08g16610	vegetative	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	OsRAD21-3 transcript and protein accumulated preferentially in flowers, with low levels in vegetative tissues
OsRAD21-3	Os08g0266700	LOC_Os08g16610	flower	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	OsRAD21-3 transcript and protein accumulated preferentially in flowers, with low levels in vegetative tissues
OsRAD21-3	Os08g0266700	LOC_Os08g16610	mitosis	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	OsRAD21-3-deficient RNAi lines showed arrested pollen mitosis, aberrant pollen chromosome segregation and aborted pollen grains, which led to disrupted pollen viability
OsRAD21-3	Os08g0266700	LOC_Os08g16610	mitosis	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa	However, male meiosis in these RNAi lines did not appear to be severely disrupted, which suggests that the main involvement of OsRAD21-3 is in post-meiotic pollen development by affecting pollen mitosis
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiosis	The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis	These observations suggest that OsRad21-4 is essential for efficient meiosis
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiosis	The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis	The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiosis	OsREC8 is essential for chromatid cohesion and metaphase I monopolar orientation in rice meiosis	Furthermore, fluorescent in situ hybridization experiments on Osrec8 meiocytes demonstrated that the mutation eliminated meiotic centromeric cohesion completely during prophase I and also led to the bipolar orientation of the kinetochores during the first meiotic division and accordingly resulted in premature separation of sister chromatid during meiosis I
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiosis	OsREC8 is essential for chromatid cohesion and metaphase I monopolar orientation in rice meiosis	OsREC8 is essential for chromatid cohesion and metaphase I monopolar orientation in rice meiosis
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiotic	OsREC8 is essential for chromatid cohesion and metaphase I monopolar orientation in rice meiosis	We showed that OsREC8 encodes a protein that localized to meiotic chromosomes from approximately meiotic interphase to metaphase I
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiotic	OsREC8 is essential for chromatid cohesion and metaphase I monopolar orientation in rice meiosis	Furthermore, fluorescent in situ hybridization experiments on Osrec8 meiocytes demonstrated that the mutation eliminated meiotic centromeric cohesion completely during prophase I and also led to the bipolar orientation of the kinetochores during the first meiotic division and accordingly resulted in premature separation of sister chromatid during meiosis I
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiotic	OsREC8 is essential for chromatid cohesion and metaphase I monopolar orientation in rice meiosis	These results suggest that OsREC8 has several essential roles in the meiotic processes
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiotic	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	Finally, we found that the centromeric localization of OsSGO1 depends on OsAM1, not other meiotic proteins such as OsREC8, PAIR2, OsMER3, or ZEP1
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiotic	OsAM1 is required for leptotene-zygotene transition in rice	Very faint OsREC8 foci persisted in the Osam1 mutant, indicating that OsAM1 is not required for the initial meiotic recruitment of OsREC8
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiotic	The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis	Meiotic chromosome behaviors were monitored from male meiocytes of OsRAD21-4-deficient lines mediated by RNAi
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Several key meiotic proteins, including ZEP1 and OsMER3, were not loaded normally onto chromosomes in Oscom1 mutants, whereas the localization of OsREC8, PAIR2 and PAIR3 seemed to be normal
OsRad21-4|OsREC8	Os05g0580500	LOC_Os05g50410	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Moreover, OsCOM1 was loaded normally onto meiotic chromosomes in Osrec8, zep1 and Osmer3 mutants, but could not be properly loaded in Osam1, pair2 and OsSPO11-1(RNAi) plants
osRAD23	Os09g0407200	LOC_Os09g24200	growth	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
osRAD23	Os09g0407200	LOC_Os09g24200	shoot	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
osRAD23	Os09g0407200	LOC_Os09g24200	salt	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
osRAD23	Os09g0407200	LOC_Os09g24200	salt stress	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
osRAD23	Os09g0407200	LOC_Os09g24200	stress	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice	Two of these genes, OsNUC1 and OsRAD23 emerged as top candidate genes with splice variants that exhibited significant divergence between the variants for shoot growth under salt stress conditions
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	flower	Homologous recombination properties of OsRad51, a recombinase from rice	cDNA corresponding to OsRad51 protein was isolated from cDNA library of rice flowers (Oryza sativa, Indica cultivar group) and cloned in to pET28a expression vector
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	meiosis	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	 These results indicate that OsBRCA2 is essential for facilitating the loading of OsRAD51 and OsDMC1 onto resected ends of programmed double-strand breaks (DSB) during meiosis to promote single-end invasions of homologous chromosomes and accurate recombination
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	meiotic	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells	 In the absence of OsBRCA2, localization to the meiotic chromosome axes of the strand-invasion proteins OsRAD51 and OsDMC1 is severely reduced and in vitro OsBRCA2 directly interacts with OsRAD51 and OsDMC1
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	growth	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 Osrad51 (Osrad51a1 Osrad51a2) mutant plants show normal vegetative growth but exhibit complete sterility, indicating that OsRAD51A1 and OsRAD51A2 are functionally redundant in rice fertility
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	fertility	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 Osrad51 (Osrad51a1 Osrad51a2) mutant plants show normal vegetative growth but exhibit complete sterility, indicating that OsRAD51A1 and OsRAD51A2 are functionally redundant in rice fertility
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	pollen	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 Moreover, univalents and multivalent associations were observed at metaphase I, chromosome fragments presented at anaphase I, and crossover formation is basically suppressed in Osrad51 pollen mother cells (PMCs)
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	vegetative	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 Osrad51 (Osrad51a1 Osrad51a2) mutant plants show normal vegetative growth but exhibit complete sterility, indicating that OsRAD51A1 and OsRAD51A2 are functionally redundant in rice fertility
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	meiosis	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 In the homologous recombination pathway, the detailed mechanisms of how OsRAD51 and OsDMC1 work in rice meiosis remain to be explored
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	meiosis	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 In addition, both OsRAD51 and OsDMC1 can interact with OsFIGL1 and OsBRCA2, two important components in rice meiosis
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	crossover	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 Moreover, univalents and multivalent associations were observed at metaphase I, chromosome fragments presented at anaphase I, and crossover formation is basically suppressed in Osrad51 pollen mother cells (PMCs)
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	homologous recombination	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	homologous recombination	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 In the homologous recombination pathway, the detailed mechanisms of how OsRAD51 and OsDMC1 work in rice meiosis remain to be explored
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	recombination	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	recombination	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	 In the homologous recombination pathway, the detailed mechanisms of how OsRAD51 and OsDMC1 work in rice meiosis remain to be explored
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	domestication	Natural variation of codon repeats in COLD11 endows rice with chilling resilience.	 Genome evolution analysis of representative rice germplasms suggested that numbers of GCG sequence repeats in the first exon of COLD11 were subjected to strong domestication selection during the northern expansion of rice planting
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	tolerance	Natural variation of codon repeats in COLD11 endows rice with chilling resilience.	 Rice loss-of-function mutations of COLD11 caused reduced chilling tolerance
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	chilling	Natural variation of codon repeats in COLD11 endows rice with chilling resilience.	Natural variation of codon repeats in COLD11 endows rice with chilling resilience.
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	chilling	Natural variation of codon repeats in COLD11 endows rice with chilling resilience.	 Rice loss-of-function mutations of COLD11 caused reduced chilling tolerance
OsRad51|OsRad51A1|COLD11	Os11g0615800	LOC_Os11g40150	chilling tolerance	Natural variation of codon repeats in COLD11 endows rice with chilling resilience.	 Rice loss-of-function mutations of COLD11 caused reduced chilling tolerance
OsRAD51D	Os09g0104200	LOC_Os09g01680	reproductive development	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)
OsRAD51D	Os09g0104200	LOC_Os09g01680	reproductive	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)
OsRAD51D	Os09g0104200	LOC_Os09g01680	reproductive growth	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)	Overall, these results suggest that OsRAD51D plays a critical role in reproductive growth in rice.
OsRAD51D	Os09g0104200	LOC_Os09g01680	telomere lengthening	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)	The osrad51d and Ubi:RNAi-OsRAD51D plants contained longer telomeres compared with wild type plants, indicating that OsRAD51D is a negative factor for telomere lengthening.
OsRAD51D	Os09g0104200	LOC_Os09g01680	lemma	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)	Homozygous osrad51d mutant flowers exhibited impaired development of lemma and palea and contained unusual numbers of stamens and stigmas.
OsRAD51D	Os09g0104200	LOC_Os09g01680	palea	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)	Homozygous osrad51d mutant flowers exhibited impaired development of lemma and palea and contained unusual numbers of stamens and stigmas.
OsRAD51D	Os09g0104200	LOC_Os09g01680	stamen number	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)	Homozygous osrad51d mutant flowers exhibited impaired development of lemma and palea and contained unusual numbers of stamens and stigmas.
OsRAD51D	Os09g0104200	LOC_Os09g01680	stigma number	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)	Homozygous osrad51d mutant flowers exhibited impaired development of lemma and palea and contained unusual numbers of stamens and stigmas.
OsRAD51D	Os09g0104200	LOC_Os09g01680	homologous chromosome pairing	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.)	During early meiosis, osrad51d pollen mother cells (PMCs) failed to form normal homologous chromosome pairings
OsRAD51D	Os09g0104200	LOC_Os09g01680	meiosis	OsRAD51D promotes homologous pairing and recombination by preventing non-homologous interactions in rice meiosis.	Here, through detailed analyses of Osrad51d single and double mutants, we pinpoint the specific function of OsRAD51D in coordinating homologous pairing and recombination by preventing non-homologous interactions during meiosis
OsRAD51D	Os09g0104200	LOC_Os09g01680	meiosis	OsRAD51D promotes homologous pairing and recombination by preventing non-homologous interactions in rice meiosis.	Moreover, the interplay between OsRAD51D and OsRAD51C indicates both conservation and divergence of their functions in meiosis
OsRAD51D	Os09g0104200	LOC_Os09g01680	meiosis	OsRAD51D promotes homologous pairing and recombination by preventing non-homologous interactions in rice meiosis.	Altogether, this work reveals that OsRAD51D plays an essential role in the inhibition of non-homologous connections, thus guaranteeing faithful pairing and recombination during meiosis
OsRAD51D	Os09g0104200	LOC_Os09g01680	meiosis	OsRAD51D promotes homologous pairing and recombination by preventing nonhomologous interactions in rice meiosis	OsRAD51D promotes homologous pairing and recombination by preventing nonhomologous interactions in rice meiosis
OsRAD51D	Os09g0104200	LOC_Os09g01680	meiosis	OsRAD51D promotes homologous pairing and recombination by preventing nonhomologous interactions in rice meiosis	Here, through detailed analyses of Osrad51d single and double mutants, we pinpoint the specific function of OsRAD51D in coordinating homologous pairing and recombination by preventing nonhomologous interactions during meiosis
OsRAD51D	Os09g0104200	LOC_Os09g01680	meiosis	OsRAD51D promotes homologous pairing and recombination by preventing nonhomologous interactions in rice meiosis	Moreover, the interplay between OsRAD51D and OsRAD51C indicates both conservation and divergence of their functions in meiosis
OsRAD51D	Os09g0104200	LOC_Os09g01680	meiosis	OsRAD51D promotes homologous pairing and recombination by preventing nonhomologous interactions in rice meiosis	Altogether, this work reveals that OsRAD51D plays an essential role in the inhibition of nonhomologous connections, thus guaranteeing faithful pairing and recombination during meiosis
OsRAD51D	Os09g0104200	LOC_Os09g01680	homologous recombination	OsRAD51D promotes homologous pairing and recombination by preventing nonhomologous interactions in rice meiosis	The failed localization of OsRAD51 and OsDMC1 in Osrad51d, together with the genetic analysis of Osrad51d Osdmc1a Osdmc1b, indicates that OsRAD51D acts at a very early stage of homologous recombination
OsRad52-2a	Os03g0851500	LOC_Os03g63450	homologous recombination	Biochemical characterization of plant Rad52 protein from rice (Oryza sativa).	Put together, OsRad52-2a forms oligomeric structures and binds to ssDNA/dsDNA for mediating an important function like renaturation during homologous recombination
OsRad6	Os03g0791800	LOC_Os03g57790	cell cycle	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex	Two-hybrid and pull-down analyses indicated that OsRad6 binds to OsSgt1, and transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed only in the proliferating tissues such as the shoot apical meristem, suggesting that their expression is cell cycle-dependent
OsRad6	Os03g0791800	LOC_Os03g57790	shoot apical meristem	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex	Two-hybrid and pull-down analyses indicated that OsRad6 binds to OsSgt1, and transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed only in the proliferating tissues such as the shoot apical meristem, suggesting that their expression is cell cycle-dependent
OsRad6	Os03g0791800	LOC_Os03g57790	meristem	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex	Two-hybrid and pull-down analyses indicated that OsRad6 binds to OsSgt1, and transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed only in the proliferating tissues such as the shoot apical meristem, suggesting that their expression is cell cycle-dependent
OsRad6	Os03g0791800	LOC_Os03g57790	shoot	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex	Two-hybrid and pull-down analyses indicated that OsRad6 binds to OsSgt1, and transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed only in the proliferating tissues such as the shoot apical meristem, suggesting that their expression is cell cycle-dependent
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	ethylene	OsRAF is an ethylene responsive and root abundant factor gene of rice	OsRAF is an ethylene responsive and root abundant factor gene of rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	root	OsRAF is an ethylene responsive and root abundant factor gene of rice	Here, we report OsRAF (a Root Abundant Factor gene in Oryza sativa), a new member of the rice ERF group, expressed more abundantly in roots than in other organs of rice at the transcriptional level
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	root	OsRAF is an ethylene responsive and root abundant factor gene of rice	OsRAF is an ethylene responsive and root abundant factor gene of rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	grain	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	grain	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.	Phylogenetic analysis showed that OsLG3 might have much potential value for improvement of grain length in japonica breeding
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	grain length	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	grain length	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.	Phylogenetic analysis showed that OsLG3 might have much potential value for improvement of grain length in japonica breeding
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	yield	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	breeding	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.	Phylogenetic analysis showed that OsLG3 might have much potential value for improvement of grain length in japonica breeding
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	breeding	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.	The results demonstrated that Ho-LAMap is a potential approach for gene discovery and OsLG3 is a promising gene to be utilized in genomic assisted breeding for rice cultivar improvement
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	transcription factor	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Here, we report that the ERF family transcription factor OsLG3 positively regulates drought tolerance in rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	grain	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	In our previous work, we found that OsLG3 has a positive effect on rice grain length without affecting grain quality
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	development	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Collectively, our findings reveal that natural variation in OsLG3 contributes to rice drought tolerance and that the elite allele of OsLG3 is a promising genetic resource for the development of drought-tolerant rice varieties
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	grain length	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	In our previous work, we found that OsLG3 has a positive effect on rice grain length without affecting grain quality
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Here, we report that the ERF family transcription factor OsLG3 positively regulates drought tolerance in rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Phylogenetic analysis indicated that the tolerant allele of OsLG3 may improve drought tolerance in cultivated japonica rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Introgression lines and complementation transgenic lines containing the elite allele of OsLG3IRAT109 showed increased drought tolerance, demonstrating that natural variation in OsLG3 contributes to drought tolerance in rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Collectively, our findings reveal that natural variation in OsLG3 contributes to rice drought tolerance and that the elite allele of OsLG3 is a promising genetic resource for the development of drought-tolerant rice varieties
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Here, we report that the ERF family transcription factor OsLG3 positively regulates drought tolerance in rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	By performing candidate gene association analysis, we found that natural variation in the promoter of OsLG3 is associated with tolerance to osmotic stress in germinating rice seeds
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Overexpression of OsLG3 significantly improved the tolerance of rice plants to simulated drought, whereas suppression of OsLG3 resulted in greater susceptibility
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Phylogenetic analysis indicated that the tolerant allele of OsLG3 may improve drought tolerance in cultivated japonica rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Introgression lines and complementation transgenic lines containing the elite allele of OsLG3IRAT109 showed increased drought tolerance, demonstrating that natural variation in OsLG3 contributes to drought tolerance in rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Further investigation suggested that OsLG3 plays a positive role in drought-stress tolerance in rice by inducing reactive oxygen species scavenging
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Collectively, our findings reveal that natural variation in OsLG3 contributes to rice drought tolerance and that the elite allele of OsLG3 is a promising genetic resource for the development of drought-tolerant rice varieties
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Here, we report that the ERF family transcription factor OsLG3 positively regulates drought tolerance in rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Phylogenetic analysis indicated that the tolerant allele of OsLG3 may improve drought tolerance in cultivated japonica rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Introgression lines and complementation transgenic lines containing the elite allele of OsLG3IRAT109 showed increased drought tolerance, demonstrating that natural variation in OsLG3 contributes to drought tolerance in rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	drought tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Collectively, our findings reveal that natural variation in OsLG3 contributes to rice drought tolerance and that the elite allele of OsLG3 is a promising genetic resource for the development of drought-tolerant rice varieties
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	stress	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	By performing candidate gene association analysis, we found that natural variation in the promoter of OsLG3 is associated with tolerance to osmotic stress in germinating rice seeds
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	quality	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	In our previous work, we found that OsLG3 has a positive effect on rice grain length without affecting grain quality
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	stress tolerance	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Further investigation suggested that OsLG3 plays a positive role in drought-stress tolerance in rice by inducing reactive oxygen species scavenging
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	reactive oxygen species	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	Further investigation suggested that OsLG3 plays a positive role in drought-stress tolerance in rice by inducing reactive oxygen species scavenging
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	grain quality	Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.	In our previous work, we found that OsLG3 has a positive effect on rice grain length without affecting grain quality
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	transcription factor	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	salt	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	salt	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Compared with wild type, transgenic lines overexpressing OsSTAP1 exhibited increased tolerance to salt stress with higher SOD, POD, and CAT activities, and lower Na+/K+ ratios in the shoots
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	salt	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Conclusion: This study suggests that OsSTAP1 functions as an AP2/ERF transcriptional activator, and plays a positive role in salt tolerance by decreasing the Na+/K+ ratio and maintaining cellular redox homeostasis
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Compared with wild type, transgenic lines overexpressing OsSTAP1 exhibited increased tolerance to salt stress with higher SOD, POD, and CAT activities, and lower Na+/K+ ratios in the shoots
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	tolerance	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Conclusion: This study suggests that OsSTAP1 functions as an AP2/ERF transcriptional activator, and plays a positive role in salt tolerance by decreasing the Na+/K+ ratio and maintaining cellular redox homeostasis
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	salt tolerance	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	salt tolerance	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Conclusion: This study suggests that OsSTAP1 functions as an AP2/ERF transcriptional activator, and plays a positive role in salt tolerance by decreasing the Na+/K+ ratio and maintaining cellular redox homeostasis
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	salt stress	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Compared with wild type, transgenic lines overexpressing OsSTAP1 exhibited increased tolerance to salt stress with higher SOD, POD, and CAT activities, and lower Na+/K+ ratios in the shoots
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	stress	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Compared with wild type, transgenic lines overexpressing OsSTAP1 exhibited increased tolerance to salt stress with higher SOD, POD, and CAT activities, and lower Na+/K+ ratios in the shoots
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	homeostasis	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Conclusion: This study suggests that OsSTAP1 functions as an AP2/ERF transcriptional activator, and plays a positive role in salt tolerance by decreasing the Na+/K+ ratio and maintaining cellular redox homeostasis
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	nucleus	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	OsSTAP1 is localized to the nucleus and acts as a transcriptional activator in plant cells
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	transcriptional activator	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	OsSTAP1 is localized to the nucleus and acts as a transcriptional activator in plant cells
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	transcriptional activator	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Conclusion: This study suggests that OsSTAP1 functions as an AP2/ERF transcriptional activator, and plays a positive role in salt tolerance by decreasing the Na+/K+ ratio and maintaining cellular redox homeostasis
OsRAF|OsLG3|OsSTAP1	Os03g0183000	LOC_Os03g08470	redox homeostasis	Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice	Conclusion: This study suggests that OsSTAP1 functions as an AP2/ERF transcriptional activator, and plays a positive role in salt tolerance by decreasing the Na+/K+ ratio and maintaining cellular redox homeostasis
OsRAM2	Os03g0735900	LOC_Os03g52570	mycorrhizal symbiosis	OsRAM2 function in lipid biosynthesis is required for arbuscular mycorrhizal symbiosis in rice 	OsRAM2 function in lipid biosynthesis is required for arbuscular mycorrhizal symbiosis in rice 
OsRAM2	Os03g0735900	LOC_Os03g52570	symbiosis	OsRAM2 function in lipid biosynthesis is required for arbuscular mycorrhizal symbiosis in rice 	OsRAM2 function in lipid biosynthesis is required for arbuscular mycorrhizal symbiosis in rice 
OsRAM2	Os03g0735900	LOC_Os03g52570	symbiosis	OsRAM2 function in lipid biosynthesis is required for arbuscular mycorrhizal symbiosis in rice 	 Examining their expression patterns during symbiosis revealed that only OsRAM2 was strongly upregulated upon AMF inoculation
OsRAM2	Os03g0735900	LOC_Os03g52570	magnaporthe oryzae	Colonization of mutualistic mycorrhizal and parasitic blast fungi requires OsRAM2-regulated fatty acid biosynthesis in rice.	 truncatula RAM2, and found that plants defective in OsRAM2 were unable to be colonized by AM fungi and showed impaired colonization by Magnaporthe oryzae
OsRAM2	Os03g0735900	LOC_Os03g52570	fatty acid biosynthesis	Colonization of mutualistic mycorrhizal and parasitic blast fungi requires OsRAM2-regulated fatty acid biosynthesis in rice.	 Collectively, our data show that the function and regulation of OsRAM2 is conserved in monocot and dicot plants and reveals that, similar to mutualistic fungi, pathogenic fungi have recruited RAM2-mediated fatty acid biosynthesis to facilitate invasion
OsRAN2	Os05g0574500	LOC_Os05g49890	salinity stress	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	Seedlings of transgenic Arabidopsis thaliana plants overexpressing OsRAN2 were overly sensitive to salinity stress and exogenous ABA treatment
OsRAN2	Os05g0574500	LOC_Os05g49890	ABA	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	Seedlings of transgenic Arabidopsis thaliana plants overexpressing OsRAN2 were overly sensitive to salinity stress and exogenous ABA treatment
OsRAN2	Os05g0574500	LOC_Os05g49890	cold stress	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	Here, we investigated OsRAN2 involved in regulation of cell division during cold stress in rice
OsRAN2	Os05g0574500	LOC_Os05g49890	cold stress	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress
OsRAN2	Os05g0574500	LOC_Os05g49890	mitosis	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	Our study suggests a mechanism for OsRAN2 in regulating cold resistance in rice by maintaining cell division through promoting the normal export of intranuclear tubulin at the end of mitosis
OsRAN2	Os05g0574500	LOC_Os05g49890	mitosis	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress
OsRAN2	Os05g0574500	LOC_Os05g49890	drought	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	Expression of OsRAN2 was increased under cold treatment, but not during salt and drought stress
OsRAN2	Os05g0574500	LOC_Os05g49890	leaf	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	OsRAN2 overexpression in tobacco epidermal leaf cells disturbed the nuclear import of a maize (Zea mays L
OsRAN2	Os05g0574500	LOC_Os05g49890	salinity	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	Overexpression of OsRAN2 in rice resulted in enhanced sensitivity to salinity, osmotic stress, and ABA
OsRAN2	Os05g0574500	LOC_Os05g49890	salinity	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	Seedlings of transgenic Arabidopsis thaliana plants overexpressing OsRAN2 were overly sensitive to salinity stress and exogenous ABA treatment
OsRAN2	Os05g0574500	LOC_Os05g49890	salinity	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress
OsRAN2	Os05g0574500	LOC_Os05g49890	salt	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	Expression of OsRAN2 was increased under cold treatment, but not during salt and drought stress
OsRAN2	Os05g0574500	LOC_Os05g49890	root	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	The mean root mitotic index was closely related to the expression level of OsRAN2
OsRAN2	Os05g0574500	LOC_Os05g49890	cell division	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	Here, we investigated OsRAN2 involved in regulation of cell division during cold stress in rice
OsRAN2	Os05g0574500	LOC_Os05g49890	cell division	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	The transgenic rice overexpressing OsRAN2 showed maintained cell division, decreased proportion of cells with intranuclear tubulin and formation of a normal nuclear envelope under the cold condition
OsRAN2	Os05g0574500	LOC_Os05g49890	cell division	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	Our study suggests a mechanism for OsRAN2 in regulating cold resistance in rice by maintaining cell division through promoting the normal export of intranuclear tubulin at the end of mitosis
OsRAN2	Os05g0574500	LOC_Os05g49890	cell division	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress
OsRAN2	Os05g0574500	LOC_Os05g49890	salt	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	Transcription of OsRAN2 was reduced by salt, osmotic, and exogenous abscisic acid (ABA) treatments, as determined by real-time PCR
OsRAN2	Os05g0574500	LOC_Os05g49890	cold tolerance	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	Overexpression of OsRAN2 enhanced cold tolerance in rice
OsRAN2	Os05g0574500	LOC_Os05g49890	cold tolerance	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress
OsRAN2	Os05g0574500	LOC_Os05g49890	seedling	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	Seedlings of transgenic Arabidopsis thaliana plants overexpressing OsRAN2 were overly sensitive to salinity stress and exogenous ABA treatment
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	transcription factor	OsRap2.6 transcription factor contributes to rice innate immunity through its interaction with Receptor for Activated Kinase-C 1 (RACK1)	OsRap2.6 transcription factor contributes to rice innate immunity through its interaction with Receptor for Activated Kinase-C 1 (RACK1)
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	transcription factor	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	An ERF transcription factor OsERF101 is predominantly expressed in rice reproductive tissues and plays an important role in improving rice seed setting rate under drought stress
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	growth	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	 OsERF101 was predominantly expressed in flowers, particularly in the tapetum and microspores under normal growth conditions
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	seed	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	An ERF transcription factor OsERF101 is predominantly expressed in rice reproductive tissues and plays an important role in improving rice seed setting rate under drought stress
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	drought	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	An ERF transcription factor OsERF101 is predominantly expressed in rice reproductive tissues and plays an important role in improving rice seed setting rate under drought stress
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	vegetative	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	 In this study, we identified a gene named OsERF101 as an important positive regulator in the adaptive responses to dehydration stress during the reproductive and vegetative stages
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	vegetative	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	 Taken together, our results indicate that OsERF101 is a gene that regulates dehydration responses during the vegetative and reproductive stages
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	stress	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	An ERF transcription factor OsERF101 is predominantly expressed in rice reproductive tissues and plays an important role in improving rice seed setting rate under drought stress
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	stress	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	 In this study, we identified a gene named OsERF101 as an important positive regulator in the adaptive responses to dehydration stress during the reproductive and vegetative stages
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	reproductive	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	An ERF transcription factor OsERF101 is predominantly expressed in rice reproductive tissues and plays an important role in improving rice seed setting rate under drought stress
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	reproductive	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	 In this study, we identified a gene named OsERF101 as an important positive regulator in the adaptive responses to dehydration stress during the reproductive and vegetative stages
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	reproductive	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	 Taken together, our results indicate that OsERF101 is a gene that regulates dehydration responses during the vegetative and reproductive stages
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	tapetum	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	 OsERF101 was predominantly expressed in flowers, particularly in the tapetum and microspores under normal growth conditions
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	drought stress	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	An ERF transcription factor OsERF101 is predominantly expressed in rice reproductive tissues and plays an important role in improving rice seed setting rate under drought stress
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	leaf	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Compared with wild type, the oserf101 T-DNA knockout mutant showed delayed leaf yellowing and higher chlorophyll contents during DIS and natural senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	leaf	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 After methyl jasmonate treatment to induce rapid leaf de-greening, the oserf101 leaves retained more chlorophyll compared with wild type, indicating that OsERF101 is involved in promoting jasmonic acid (JA)-induced leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	leaf	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Transient transactivation and chromatin immunoprecipitation assays revealed that OsERF101 directly binds to the promoter regions of OsNAP and OsMYC2, which activate genes involved in chlorophyll degradation and JA signaling-mediated leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	leaf	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 These results demonstrate that OsERF101 promotes the onset and progression of leaf senescence through a JA-mediated signaling pathway
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	leaf senescence	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 After methyl jasmonate treatment to induce rapid leaf de-greening, the oserf101 leaves retained more chlorophyll compared with wild type, indicating that OsERF101 is involved in promoting jasmonic acid (JA)-induced leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	leaf senescence	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Transient transactivation and chromatin immunoprecipitation assays revealed that OsERF101 directly binds to the promoter regions of OsNAP and OsMYC2, which activate genes involved in chlorophyll degradation and JA signaling-mediated leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	leaf senescence	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 These results demonstrate that OsERF101 promotes the onset and progression of leaf senescence through a JA-mediated signaling pathway
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	transcription factor	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 OsERF101 encodes a predicted transcription factor and OsERF101 transcript levels rapidly increased in rice leaves during dark-induced senescence (DIS), indicating that OsERF101 is a senescence-associated transcription factor
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	senescence	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 OsERF101 encodes a predicted transcription factor and OsERF101 transcript levels rapidly increased in rice leaves during dark-induced senescence (DIS), indicating that OsERF101 is a senescence-associated transcription factor
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	senescence	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Compared with wild type, the oserf101 T-DNA knockout mutant showed delayed leaf yellowing and higher chlorophyll contents during DIS and natural senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	senescence	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 After methyl jasmonate treatment to induce rapid leaf de-greening, the oserf101 leaves retained more chlorophyll compared with wild type, indicating that OsERF101 is involved in promoting jasmonic acid (JA)-induced leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	senescence	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Transient transactivation and chromatin immunoprecipitation assays revealed that OsERF101 directly binds to the promoter regions of OsNAP and OsMYC2, which activate genes involved in chlorophyll degradation and JA signaling-mediated leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	senescence	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 These results demonstrate that OsERF101 promotes the onset and progression of leaf senescence through a JA-mediated signaling pathway
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	jasmonate	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 After methyl jasmonate treatment to induce rapid leaf de-greening, the oserf101 leaves retained more chlorophyll compared with wild type, indicating that OsERF101 is involved in promoting jasmonic acid (JA)-induced leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	 ja 	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Consistent with the involvement of JA, the expression of the JA signaling genes OsMYC2/JA INSENSITIVE 1 (OsJAI1) and CORONATINE INSENSITIVE 1a (OsCOI1a), was downregulated in the oserf101 leaves during DIS
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	 ja 	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Transient transactivation and chromatin immunoprecipitation assays revealed that OsERF101 directly binds to the promoter regions of OsNAP and OsMYC2, which activate genes involved in chlorophyll degradation and JA signaling-mediated leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	JA	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Consistent with the involvement of JA, the expression of the JA signaling genes OsMYC2/JA INSENSITIVE 1 (OsJAI1) and CORONATINE INSENSITIVE 1a (OsCOI1a), was downregulated in the oserf101 leaves during DIS
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	JA	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Transient transactivation and chromatin immunoprecipitation assays revealed that OsERF101 directly binds to the promoter regions of OsNAP and OsMYC2, which activate genes involved in chlorophyll degradation and JA signaling-mediated leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	jasmonic	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 After methyl jasmonate treatment to induce rapid leaf de-greening, the oserf101 leaves retained more chlorophyll compared with wild type, indicating that OsERF101 is involved in promoting jasmonic acid (JA)-induced leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	jasmonic acid	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 After methyl jasmonate treatment to induce rapid leaf de-greening, the oserf101 leaves retained more chlorophyll compared with wild type, indicating that OsERF101 is involved in promoting jasmonic acid (JA)-induced leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	chlorophyll content	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Compared with wild type, the oserf101 T-DNA knockout mutant showed delayed leaf yellowing and higher chlorophyll contents during DIS and natural senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	methyl jasmonate	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 After methyl jasmonate treatment to induce rapid leaf de-greening, the oserf101 leaves retained more chlorophyll compared with wild type, indicating that OsERF101 is involved in promoting jasmonic acid (JA)-induced leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	JA signaling	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Consistent with the involvement of JA, the expression of the JA signaling genes OsMYC2/JA INSENSITIVE 1 (OsJAI1) and CORONATINE INSENSITIVE 1a (OsCOI1a), was downregulated in the oserf101 leaves during DIS
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	JA signaling	Rice ETHYLENE RESPONSE FACTOR 101 Promotes Leaf Senescence Through Jasmonic Acid-Mediated Regulation of OsNAP and OsMYC2	 Transient transactivation and chromatin immunoprecipitation assays revealed that OsERF101 directly binds to the promoter regions of OsNAP and OsMYC2, which activate genes involved in chlorophyll degradation and JA signaling-mediated leaf senescence
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	transcription factor	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	resistance	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.	 Unexpectedly, both the overexpression and the knockout lines of OsERF101 displayed Xa1-dependent, enhanced resistance to an incompatible Xoo strain
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	nucleus	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.	 Xa1 interacts in the nucleus with the TAL effectors and OsERF101 via the BED domain
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	immunity	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	immunity	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.	 Our results indicate that OsERF101 regulates the recognition of TAL effectors by Xa1, and functions as a positive regulator of Xa1-mediated immunity
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	xoo	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.	 Unexpectedly, both the overexpression and the knockout lines of OsERF101 displayed Xa1-dependent, enhanced resistance to an incompatible Xoo strain
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	Xoo	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.	 Unexpectedly, both the overexpression and the knockout lines of OsERF101 displayed Xa1-dependent, enhanced resistance to an incompatible Xoo strain
OsRap2.6|OsERF101	Os04g0398000	LOC_Os04g32620	 xoo 	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.	 Unexpectedly, both the overexpression and the knockout lines of OsERF101 displayed Xa1-dependent, enhanced resistance to an incompatible Xoo strain
OsRAR1	Os02g0535400	LOC_Os02g33180	blight	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	Overexpression of OsRar1 and OsSGT1 in rice significantly increased basal resistance to a virulent bacterial blight Xanthomonas oryzae pv
OsRAR1	Os02g0535400	LOC_Os02g33180	disease	Differential requirement of Oryza sativa RAR1 in immune receptor-mediated resistance of rice to Magnaporthe oryzae	In our current study, we characterized the response of a rice osrar1 T-DNA insertion mutant to infection by Magnaporthe oryzae, the causal agent of rice blast disease
OsRAR1	Os02g0535400	LOC_Os02g33180	blast	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	OsRar1-OE and OsSGT1-OE plants also enhanced resistance to all four virulent blast fungal Magnaporthe oryzae races
OsRAR1	Os02g0535400	LOC_Os02g33180	magnaporthe oryzae	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	OsRar1-OE and OsSGT1-OE plants also enhanced resistance to all four virulent blast fungal Magnaporthe oryzae races
OsRAR1	Os02g0535400	LOC_Os02g33180	blast	Differential requirement of Oryza sativa RAR1 in immune receptor-mediated resistance of rice to Magnaporthe oryzae	In our current study, we characterized the response of a rice osrar1 T-DNA insertion mutant to infection by Magnaporthe oryzae, the causal agent of rice blast disease
OsRAR1	Os02g0535400	LOC_Os02g33180	bacterial blight	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	Overexpression of OsRar1 and OsSGT1 in rice significantly increased basal resistance to a virulent bacterial blight Xanthomonas oryzae pv
OsRAR1	Os02g0535400	LOC_Os02g33180	blast disease	Differential requirement of Oryza sativa RAR1 in immune receptor-mediated resistance of rice to Magnaporthe oryzae	In our current study, we characterized the response of a rice osrar1 T-DNA insertion mutant to infection by Magnaporthe oryzae, the causal agent of rice blast disease
OsRAR1	Os02g0535400	LOC_Os02g33180	magnaporthe oryzae	Differential requirement of Oryza sativa RAR1 in immune receptor-mediated resistance of rice to Magnaporthe oryzae	In our current study, we characterized the response of a rice osrar1 T-DNA insertion mutant to infection by Magnaporthe oryzae, the causal agent of rice blast disease
OsRAR1	Os02g0535400	LOC_Os02g33180	disease resistance	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	These results collectively suggest that OsRar1 and OsSGT1 might be differentially required for rice basal disease resistance
OsRAR1	Os02g0535400	LOC_Os02g33180	disease resistance	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance
OsRAR1	Os02g0535400	LOC_Os02g33180	disease	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	These results collectively suggest that OsRar1 and OsSGT1 might be differentially required for rice basal disease resistance
OsRAR1	Os02g0535400	LOC_Os02g33180	disease	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance
OsRAV11	Os01g0693400	LOC_Os01g49830	seed	Genes of the RAV Family Control Heading Date and Carpel Development in Rice.	Furthermore, OsRAV11 and OsRAV12 may have acquired a new function in the differentiation of the carpel and the control of seed size, acting downstream of floral homeotic factors
OsRAV11	Os01g0693400	LOC_Os01g49830	floral	Genes of the RAV Family Control Heading Date and Carpel Development in Rice.	Furthermore, OsRAV11 and OsRAV12 may have acquired a new function in the differentiation of the carpel and the control of seed size, acting downstream of floral homeotic factors
OsRAV11	Os01g0693400	LOC_Os01g49830	seed size	Genes of the RAV Family Control Heading Date and Carpel Development in Rice.	Furthermore, OsRAV11 and OsRAV12 may have acquired a new function in the differentiation of the carpel and the control of seed size, acting downstream of floral homeotic factors
OsRAV12	Os05g0549800	LOC_Os05g47650	seed	Genes of the RAV Family Control Heading Date and Carpel Development in Rice.	Furthermore, OsRAV11 and OsRAV12 may have acquired a new function in the differentiation of the carpel and the control of seed size, acting downstream of floral homeotic factors
OsRAV12	Os05g0549800	LOC_Os05g47650	floral	Genes of the RAV Family Control Heading Date and Carpel Development in Rice.	Furthermore, OsRAV11 and OsRAV12 may have acquired a new function in the differentiation of the carpel and the control of seed size, acting downstream of floral homeotic factors
OsRAV12	Os05g0549800	LOC_Os05g47650	seed size	Genes of the RAV Family Control Heading Date and Carpel Development in Rice.	Furthermore, OsRAV11 and OsRAV12 may have acquired a new function in the differentiation of the carpel and the control of seed size, acting downstream of floral homeotic factors
OsRAV2	Os01g0141000	LOC_Os01g04800	salt	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.
OsRAV2	Os01g0141000	LOC_Os01g04800	salt	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Transgenic analysis indicated that P OsRAV2 is induced by salt stress but not osmotic stress or ABA treatment
OsRAV2	Os01g0141000	LOC_Os01g04800	salt	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Serial 5' deletions and site-specific mutations in P OsRAV2 revealed that a GT-1 element located at position -664 relative to the putative translation start site is essential for the salt induction of P OsRAV2
OsRAV2	Os01g0141000	LOC_Os01g04800	salt	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	The regulatory function of the GT-1 element in the salt induction of OsRAV2 was verified in situ in plants with targeted mutations generated using the CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9) system
OsRAV2	Os01g0141000	LOC_Os01g04800	salt	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Taken together, our results indicate that the GT-1 element directly controls the salt response of OsRAV2
OsRAV2	Os01g0141000	LOC_Os01g04800	ABA	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Further expression profile analyses indicated that OsRAV2 is transcriptionally regulated by salt, but not KCl, osmotic stress, cold or ABA (abscisic acid) treatment
OsRAV2	Os01g0141000	LOC_Os01g04800	ABA	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Transgenic analysis indicated that P OsRAV2 is induced by salt stress but not osmotic stress or ABA treatment
OsRAV2	Os01g0141000	LOC_Os01g04800	salt stress	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Transgenic analysis indicated that P OsRAV2 is induced by salt stress but not osmotic stress or ABA treatment
OsRAV2	Os01g0141000	LOC_Os01g04800	stress	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	To elucidate the regulatory mechanism of the stress response at the transcriptional level, we isolated and characterized the promoter region of OsRAV2 (P OsRAV2 )
OsRAV2	Os01g0141000	LOC_Os01g04800	stress	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Transgenic analysis indicated that P OsRAV2 is induced by salt stress but not osmotic stress or ABA treatment
OsRAV2	Os01g0141000	LOC_Os01g04800	ABA	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Further expression profile analyses indicated that OsRAV2 is transcriptionally regulated by salt, but not KCl, osmotic stress, cold or ABA (abscisic acid) treatment
OsRAV2	Os01g0141000	LOC_Os01g04800	ABA	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Transgenic analysis indicated that P OsRAV2 is induced by salt stress but not osmotic stress or ABA treatment
OsRAV2	Os01g0141000	LOC_Os01g04800	abscisic acid	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Further expression profile analyses indicated that OsRAV2 is transcriptionally regulated by salt, but not KCl, osmotic stress, cold or ABA (abscisic acid) treatment
OsRAV2	Os01g0141000	LOC_Os01g04800	stress response	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	To elucidate the regulatory mechanism of the stress response at the transcriptional level, we isolated and characterized the promoter region of OsRAV2 (P OsRAV2 )
OsRBAP1	Os01g0710000	LOC_Os01g51300	spikelet	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.
OsRBAP1	Os01g0710000	LOC_Os01g51300	spikelet	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.	 Altogether, our results suggest that OsRBAP1 plays an important role in the regulation of rice height and spikelet fertility
OsRBAP1	Os01g0710000	LOC_Os01g51300	fertility	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.	 The CRISPR/Cas9 system was used to switch off OsRBAP1 in PTWT to obtain the knockout mutant osrbap1, which exhibited a severe reduction in height and fertility
OsRBAP1	Os01g0710000	LOC_Os01g51300	fertility	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.	 Altogether, our results suggest that OsRBAP1 plays an important role in the regulation of rice height and spikelet fertility
OsRBAP1	Os01g0710000	LOC_Os01g51300	map-based cloning	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.	 MutMap-based cloning revealed the occurrence of a single amino acid substitution in the LOC_Os01g51300 gene, belonging to the MSI1 (multicopy suppressor of IRA1) member OsRBAP1
OsRBAP1	Os01g0710000	LOC_Os01g51300	height	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.
OsRBAP1	Os01g0710000	LOC_Os01g51300	height	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.	 The CRISPR/Cas9 system was used to switch off OsRBAP1 in PTWT to obtain the knockout mutant osrbap1, which exhibited a severe reduction in height and fertility
OsRBAP1	Os01g0710000	LOC_Os01g51300	height	The MSI1 member OsRBAP1 gene, identified by a modified MutMap method, is required for rice height and spikelet fertility.	 Altogether, our results suggest that OsRBAP1 plays an important role in the regulation of rice height and spikelet fertility
OsrbcL1	Os10g0356000	LOC_Os10g21268	stress	Rice RING E3 ligase may negatively regulate gamma-ray response to mediate the degradation of photosynthesis-related proteins.	In this study, our findings regarding the regulation of GA irradiation-induced OsGIRP1 in relation to the levels of photosynthesis-related proteins such as OsrbcL1 and OsrbcS1 and hypersensitive responses of overexpressing plants to GR irradiation provide insight into the molecular functions of OsGIRP1 as a negative regulator in response to the stress of radiation
OsrbcL1	Os10g0356000	LOC_Os10g21268	ga	Rice RING E3 ligase may negatively regulate gamma-ray response to mediate the degradation of photosynthesis-related proteins.	In this study, our findings regarding the regulation of GA irradiation-induced OsGIRP1 in relation to the levels of photosynthesis-related proteins such as OsrbcL1 and OsrbcS1 and hypersensitive responses of overexpressing plants to GR irradiation provide insight into the molecular functions of OsGIRP1 as a negative regulator in response to the stress of radiation
OsrbcL1	Os10g0356000	LOC_Os10g21268	GA	Rice RING E3 ligase may negatively regulate gamma-ray response to mediate the degradation of photosynthesis-related proteins.	In this study, our findings regarding the regulation of GA irradiation-induced OsGIRP1 in relation to the levels of photosynthesis-related proteins such as OsrbcL1 and OsrbcS1 and hypersensitive responses of overexpressing plants to GR irradiation provide insight into the molecular functions of OsGIRP1 as a negative regulator in response to the stress of radiation
OsRBD1	Os12g0100100	LOC_Os12g01010	tolerance	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Further, co-transformation of both OsSRO1a and OsRBD1 in yeast conferred enhanced tolerance toward salinity, osmotic, and methylglyoxal treatments
OsRBD1	Os12g0100100	LOC_Os12g01010	tolerance	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsRBD1	Os12g0100100	LOC_Os12g01010	abiotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Transcript profiling under different stress conditions revealed co-regulation of OsSRO1a and OsRBD1 expression under some abiotic stress conditions
OsRBD1	Os12g0100100	LOC_Os12g01010	abiotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsRBD1	Os12g0100100	LOC_Os12g01010	stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Transcript profiling under different stress conditions revealed co-regulation of OsSRO1a and OsRBD1 expression under some abiotic stress conditions
OsRBD1	Os12g0100100	LOC_Os12g01010	stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsRBD1	Os12g0100100	LOC_Os12g01010	biotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Transcript profiling under different stress conditions revealed co-regulation of OsSRO1a and OsRBD1 expression under some abiotic stress conditions
OsRBD1	Os12g0100100	LOC_Os12g01010	biotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsRBD1	Os12g0100100	LOC_Os12g01010	stress tolerance	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsRBD1	Os12g0100100	LOC_Os12g01010	stress response	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsRBGD3	Os08g0492100	LOC_Os08g38410	root	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	OsRBGD3 overexpression also attributed to significant root development and early flowering in transgenics
OsRBGD3	Os08g0492100	LOC_Os08g38410	temperature	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	Hence, OsRBGD3 could be an important target for developing cold tolerant early flowering rice and other crops' genotypes for increasing production in low temperature affected areas
OsRBGD3	Os08g0492100	LOC_Os08g38410	development	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	OsRBGD3 overexpression also attributed to significant root development and early flowering in transgenics
OsRBGD3	Os08g0492100	LOC_Os08g38410	drought	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	OsRBGD3 exhibited cold, drought and salt stress inductive expression in a drought tolerant N22 rice cultivar as compared with susceptible variety IR64
OsRBGD3	Os08g0492100	LOC_Os08g38410	salt	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	OsRBGD3 exhibited cold, drought and salt stress inductive expression in a drought tolerant N22 rice cultivar as compared with susceptible variety IR64
OsRBGD3	Os08g0492100	LOC_Os08g38410	tolerance	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	Constitutive overexpression of the OsRBGD3 in transgenic Arabidopsis conferred tolerance to cold stress
OsRBGD3	Os08g0492100	LOC_Os08g38410	cold stress	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.
OsRBGD3	Os08g0492100	LOC_Os08g38410	cold stress	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	Constitutive overexpression of the OsRBGD3 in transgenic Arabidopsis conferred tolerance to cold stress
OsRBGD3	Os08g0492100	LOC_Os08g38410	root development	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	OsRBGD3 overexpression also attributed to significant root development and early flowering in transgenics
OsRBGD3	Os08g0492100	LOC_Os08g38410	salt stress	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	OsRBGD3 exhibited cold, drought and salt stress inductive expression in a drought tolerant N22 rice cultivar as compared with susceptible variety IR64
OsRBGD3	Os08g0492100	LOC_Os08g38410	stress	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.
OsRBGD3	Os08g0492100	LOC_Os08g38410	stress	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	OsRBGD3 exhibited cold, drought and salt stress inductive expression in a drought tolerant N22 rice cultivar as compared with susceptible variety IR64
OsRBGD3	Os08g0492100	LOC_Os08g38410	stress	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	Constitutive overexpression of the OsRBGD3 in transgenic Arabidopsis conferred tolerance to cold stress
OsRBGD3	Os08g0492100	LOC_Os08g38410	stress tolerance	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	growth	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	In addition, a number of genes related to energy supply, substrate transport, stress response and transcriptional regulation were differentially expressed in osrbohA plants even under normal growth conditions, suggesting that OsRbohA has fundamental and broad functions in rice
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	pollen	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	Compared with wild-type (WT), the OsRbohA-knockout mutant osrbohA exhibited upregulated expression of other respiratory burst oxidase homolog genes and multiple abnormal agronomic traits, including reduced biomass, low germination rate, and decreased pollen viability and seed fertility
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	seed	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	Compared with wild-type (WT), the OsRbohA-knockout mutant osrbohA exhibited upregulated expression of other respiratory burst oxidase homolog genes and multiple abnormal agronomic traits, including reduced biomass, low germination rate, and decreased pollen viability and seed fertility
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	development	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	OsRbohA was expressed in all tissues examined throughout development
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	tolerance	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	Ablation of OsRbohA impaired the tolerance of plants to various water stresses, whereas its overexpression enhanced the tolerance
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	fertility	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	Compared with wild-type (WT), the OsRbohA-knockout mutant osrbohA exhibited upregulated expression of other respiratory burst oxidase homolog genes and multiple abnormal agronomic traits, including reduced biomass, low germination rate, and decreased pollen viability and seed fertility
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	stress	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	In addition, a number of genes related to energy supply, substrate transport, stress response and transcriptional regulation were differentially expressed in osrbohA plants even under normal growth conditions, suggesting that OsRbohA has fundamental and broad functions in rice
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	plasma membrane	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	stress response	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.
OsrbohA|Osrboh2	Os01g0734200	LOC_Os01g53294	stress response	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	In addition, a number of genes related to energy supply, substrate transport, stress response and transcriptional regulation were differentially expressed in osrbohA plants even under normal growth conditions, suggesting that OsRbohA has fundamental and broad functions in rice
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	growth	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 Moreover, a number of genes involved in plant development, stress response, transcriptional regulation, and particularly ABA signaling are differentially expressed in osrbohB plants under both normal growth and drought conditions
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	plant development	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 Moreover, a number of genes involved in plant development, stress response, transcriptional regulation, and particularly ABA signaling are differentially expressed in osrbohB plants under both normal growth and drought conditions
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	seed	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 The osrbohB mutant also exhibits lower seed germination rate, organ size and thousand seed weight, but higher stomatal aperture and sensitivity to drought
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	drought	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	We found that a rice NADPH oxidase gene OsRbohB contributes drought tolerance and its functions are involved in the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	drought	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 The osrbohB mutant also exhibits lower seed germination rate, organ size and thousand seed weight, but higher stomatal aperture and sensitivity to drought
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	drought	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 Moreover, a number of genes involved in plant development, stress response, transcriptional regulation, and particularly ABA signaling are differentially expressed in osrbohB plants under both normal growth and drought conditions
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	drought	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 All these results suggest the roles of OsRbohB in drought tolerance of rice, which probably performed through the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	salt	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 The transcriptional expression of OsRbohB is also strongly stimulated by dehydration, salt and several phytohormonal treatments
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	seed germination	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 The osrbohB mutant also exhibits lower seed germination rate, organ size and thousand seed weight, but higher stomatal aperture and sensitivity to drought
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	tolerance	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	We found that a rice NADPH oxidase gene OsRbohB contributes drought tolerance and its functions are involved in the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	tolerance	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 All these results suggest the roles of OsRbohB in drought tolerance of rice, which probably performed through the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	 ABA 	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	We found that a rice NADPH oxidase gene OsRbohB contributes drought tolerance and its functions are involved in the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	 ABA 	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 Moreover, a number of genes involved in plant development, stress response, transcriptional regulation, and particularly ABA signaling are differentially expressed in osrbohB plants under both normal growth and drought conditions
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	 ABA 	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 All these results suggest the roles of OsRbohB in drought tolerance of rice, which probably performed through the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	drought tolerance	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	We found that a rice NADPH oxidase gene OsRbohB contributes drought tolerance and its functions are involved in the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	drought tolerance	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 All these results suggest the roles of OsRbohB in drought tolerance of rice, which probably performed through the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	stress	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 Moreover, a number of genes involved in plant development, stress response, transcriptional regulation, and particularly ABA signaling are differentially expressed in osrbohB plants under both normal growth and drought conditions
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	stomatal	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 The osrbohB mutant also exhibits lower seed germination rate, organ size and thousand seed weight, but higher stomatal aperture and sensitivity to drought
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	seed weight	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 The osrbohB mutant also exhibits lower seed germination rate, organ size and thousand seed weight, but higher stomatal aperture and sensitivity to drought
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	ABA	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	We found that a rice NADPH oxidase gene OsRbohB contributes drought tolerance and its functions are involved in the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	ABA	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 Moreover, a number of genes involved in plant development, stress response, transcriptional regulation, and particularly ABA signaling are differentially expressed in osrbohB plants under both normal growth and drought conditions
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	ABA	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 All these results suggest the roles of OsRbohB in drought tolerance of rice, which probably performed through the interaction of the OsRbohB-mediated ROS production and ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	organ size	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 The osrbohB mutant also exhibits lower seed germination rate, organ size and thousand seed weight, but higher stomatal aperture and sensitivity to drought
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	stress response	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice	 Moreover, a number of genes involved in plant development, stress response, transcriptional regulation, and particularly ABA signaling are differentially expressed in osrbohB plants under both normal growth and drought conditions
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	resistance	Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty.	 Overproduction of OsRACK1A restores the OsRACK1A-OsRBOHB association and promotes OsRBOHB phosphorylation to enhance ROS production, conferring rice floral resistance to U
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	floral	Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty.	 Overproduction of OsRACK1A restores the OsRACK1A-OsRBOHB association and promotes OsRBOHB phosphorylation to enhance ROS production, conferring rice floral resistance to U
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	root	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	growth	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	Kinase	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	kinase	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	stress	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	seed	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	oxidative stress	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	seed germination	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	tolerance	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	oxidative	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	ABA	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	ABA	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 OsDMI3 directly interacts with and phosphorylates OsRbohB at Ser-191, which is OsDMI3-mediated site-specific phosphorylation in ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	ABA	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	ABA	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Moreover, we discovered that the OsDMI3-mediated OsRbohB phosphorylation and H(2)O(2) production is dependent on the sucrose non-fermenting 1-related protein kinases SAPK8/9/10, which phosphorylate OsRbohB at Ser-140 in ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	root growth	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	protein kinase	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	protein kinase	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Moreover, we discovered that the OsDMI3-mediated OsRbohB phosphorylation and H(2)O(2) production is dependent on the sucrose non-fermenting 1-related protein kinases SAPK8/9/10, which phosphorylate OsRbohB at Ser-140 in ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	 ABA 	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	 ABA 	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 OsDMI3 directly interacts with and phosphorylates OsRbohB at Ser-191, which is OsDMI3-mediated site-specific phosphorylation in ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	 ABA 	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	 ABA 	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Moreover, we discovered that the OsDMI3-mediated OsRbohB phosphorylation and H(2)O(2) production is dependent on the sucrose non-fermenting 1-related protein kinases SAPK8/9/10, which phosphorylate OsRbohB at Ser-140 in ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	sucrose	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Moreover, we discovered that the OsDMI3-mediated OsRbohB phosphorylation and H(2)O(2) production is dependent on the sucrose non-fermenting 1-related protein kinases SAPK8/9/10, which phosphorylate OsRbohB at Ser-140 in ABA signaling
OsrbohB|Osrboh7	Os09g0438000	LOC_Os09g26660	ER stress	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H(2)O(2) production to potentiate ABA responses in rice.	 Further analyses revealed that OsDMI3-mediated OsRbohB Ser-191 phosphorylation positively regulates the activity of NADPH oxidase and the production of H(2)O(2) in ABA signaling, thereby enhancing the sensitivity of seed germination and root growth to ABA and plant tolerance to water stress and oxidative stress
OsRbohI	Os11g0537400	LOC_Os11g33120	root	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 These results indicate that OsRbohI is regulating rice shoot and root growth through ROS signal
OsRbohI	Os11g0537400	LOC_Os11g33120	growth	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.
OsRbohI	Os11g0537400	LOC_Os11g33120	growth	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 However, the function of OsRbohI in regulating rice growth is not yet reported
OsRbohI	Os11g0537400	LOC_Os11g33120	growth	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 These results indicate that OsRbohI is regulating rice shoot and root growth through ROS signal
OsRbohI	Os11g0537400	LOC_Os11g33120	growth	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 More importantly, our RNA-seq analysis and jasmonic acid (JA) treatment demonstrated that OsRbohI regulates rice growth through JA synthesis and signaling pathways
OsRbohI	Os11g0537400	LOC_Os11g33120	growth	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 Collectively, our results reveal a novel pathway that OsRbohI regulates rice growth and development by JA synthesis and signaling pathway through affecting rice ROS homeostasis
OsRbohI	Os11g0537400	LOC_Os11g33120	development	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.
OsRbohI	Os11g0537400	LOC_Os11g33120	development	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 Collectively, our results reveal a novel pathway that OsRbohI regulates rice growth and development by JA synthesis and signaling pathway through affecting rice ROS homeostasis
OsRbohI	Os11g0537400	LOC_Os11g33120	shoot	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 In this study, our results showed that knockout (KO) OsRbohI mutants showed significantly shorter shoot and primary roots, along with lower ROS content than those of the control lines; whereas the overexpression (OE) lines displayed contrasting results
OsRbohI	Os11g0537400	LOC_Os11g33120	shoot	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 These results indicate that OsRbohI is regulating rice shoot and root growth through ROS signal
OsRbohI	Os11g0537400	LOC_Os11g33120	ja	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 More importantly, our RNA-seq analysis and jasmonic acid (JA) treatment demonstrated that OsRbohI regulates rice growth through JA synthesis and signaling pathways
OsRbohI	Os11g0537400	LOC_Os11g33120	ja	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 Collectively, our results reveal a novel pathway that OsRbohI regulates rice growth and development by JA synthesis and signaling pathway through affecting rice ROS homeostasis
OsRbohI	Os11g0537400	LOC_Os11g33120	JA	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 More importantly, our RNA-seq analysis and jasmonic acid (JA) treatment demonstrated that OsRbohI regulates rice growth through JA synthesis and signaling pathways
OsRbohI	Os11g0537400	LOC_Os11g33120	JA	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 Collectively, our results reveal a novel pathway that OsRbohI regulates rice growth and development by JA synthesis and signaling pathway through affecting rice ROS homeostasis
OsRbohI	Os11g0537400	LOC_Os11g33120	homeostasis	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 Collectively, our results reveal a novel pathway that OsRbohI regulates rice growth and development by JA synthesis and signaling pathway through affecting rice ROS homeostasis
OsRbohI	Os11g0537400	LOC_Os11g33120	root growth	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 These results indicate that OsRbohI is regulating rice shoot and root growth through ROS signal
OsRbohI	Os11g0537400	LOC_Os11g33120	jasmonic	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.
OsRbohI	Os11g0537400	LOC_Os11g33120	jasmonic	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 More importantly, our RNA-seq analysis and jasmonic acid (JA) treatment demonstrated that OsRbohI regulates rice growth through JA synthesis and signaling pathways
OsRbohI	Os11g0537400	LOC_Os11g33120	jasmonic acid	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.
OsRbohI	Os11g0537400	LOC_Os11g33120	jasmonic acid	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 More importantly, our RNA-seq analysis and jasmonic acid (JA) treatment demonstrated that OsRbohI regulates rice growth through JA synthesis and signaling pathways
OsRbohI	Os11g0537400	LOC_Os11g33120	primary root	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 In this study, our results showed that knockout (KO) OsRbohI mutants showed significantly shorter shoot and primary roots, along with lower ROS content than those of the control lines; whereas the overexpression (OE) lines displayed contrasting results
OsRbohI	Os11g0537400	LOC_Os11g33120	 ja 	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 More importantly, our RNA-seq analysis and jasmonic acid (JA) treatment demonstrated that OsRbohI regulates rice growth through JA synthesis and signaling pathways
OsRbohI	Os11g0537400	LOC_Os11g33120	 ja 	OsRbohI Regulates Rice Growth and Development through Jasmonic Acid Signal.	 Collectively, our results reveal a novel pathway that OsRbohI regulates rice growth and development by JA synthesis and signaling pathway through affecting rice ROS homeostasis
OsRBR1	Os08g0538700	LOC_Os08g42600	Kinase	The B regulatory subunit of protein phosphatase 2A mediates the dephosphorylation of rice retinoblastoma-related protein-1.	We found by immunoprecipitation that OsPP2A B, OsPP2A catalytic subunit subtype II, PSTAIRE-type CDK and OsRBR1 were in the same protein complex, indicating a physical association between the phosphatase, the kinase and their common substrate
OsRBR2	Os11g0533500	LOC_Os11g32900	growth	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	We characterized the functions of OsRBR1 and OsRBR2 in plant growth and development in rice using both for-ward and reverse genetics methods
OsRBR2	Os11g0533500	LOC_Os11g32900	pollen	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	OsRBR2 was preferentially expressed in stamens and promoted pollen formation
OsRBR2	Os11g0533500	LOC_Os11g32900	pollen	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	Mutation of OsRBR2 led to deformed anthers without pollen
OsRBR2	Os11g0533500	LOC_Os11g32900	development	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	We characterized the functions of OsRBR1 and OsRBR2 in plant growth and development in rice using both for-ward and reverse genetics methods
OsRBR2	Os11g0533500	LOC_Os11g32900	development	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	These results suggest that OsRBR1 and OsRBR2 function with OsMSI1 in reproductive development in rice
OsRBR2	Os11g0533500	LOC_Os11g32900	floral	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	Similar to the protein interaction between AtRBR and AtMSI1 that is essential for floral de-velopment in Arabidopsis, OsMSI1 was identified as an interaction partner of OsRBR1 and OsRBR2
OsRBR2	Os11g0533500	LOC_Os11g32900	reproductive	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	These results suggest that OsRBR1 and OsRBR2 function with OsMSI1 in reproductive development in rice
OsRBR2	Os11g0533500	LOC_Os11g32900	plant growth	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	We characterized the functions of OsRBR1 and OsRBR2 in plant growth and development in rice using both for-ward and reverse genetics methods
OsRBR2	Os11g0533500	LOC_Os11g32900	reproductive development	RETINOBLASTOMA-RELATED genes specifically control inner floral organ morphogenesis and pollen development in rice.	These results suggest that OsRBR1 and OsRBR2 function with OsMSI1 in reproductive development in rice
OsrcaA1|OsrcaA2	Os11g0707000	LOC_Os11g47970	ga	Involvement of a Ca(2+)-dependent protein kinase component downstream to the gibberellin-binding phosphoprotein, RuBisCO activase, in rice	Kinase activities of these proteins were significantly reduced in the presence of uniconazole, a potent GA biosynthesis inhibitor, but one of them was strongly promoted by GA(3) treatment in transgenic plants carrying a smaller subunit of RuBisCO activase (OsrcaA1) compared to the larger subunit OsrcaA2
OsRCAR1	Os06g0527800	LOC_Os06g33640	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	Yeast two hybrid screening showed that PHS9 could interact with OsGAP, which is an interaction partner of the ABA receptor OsRCAR1
OsRCAR1	Os06g0527800	LOC_Os06g33640	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	Yeast two hybrid screening showed that PHS9 could interact with OsGAP, which is an interaction partner of the ABA receptor OsRCAR1
OsRCCR1	Os10g0389200	LOC_Os10g25030	senescence	Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice	Expression analysis by semi-quantitative PCR or quantitative real-time PCR showed that OsRCCR1 transcripts were much more abundant than OsRCCR2, and all of these genes were upregulated during senescence and following wound treatment
OsRCCR1	Os10g0389200	LOC_Os10g25030	senescence	Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice	These results suggest that OsPAO and OsRCCR1 play key roles in senescence and are involved in wound responses
OsRCI-1	Os12g0559200	LOC_Os12g37260	growth	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.
OsRCI-1	Os12g0559200	LOC_Os12g37260	growth	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.	 These results indicate that OsRCI-1 is involved in herbivore-induced JA bursts and plays a role in plant defense and growth
OsRCI-1	Os12g0559200	LOC_Os12g37260	ja	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.	 These results indicate that OsRCI-1 is involved in herbivore-induced JA bursts and plays a role in plant defense and growth
OsRCI-1	Os12g0559200	LOC_Os12g37260	JA	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.	 These results indicate that OsRCI-1 is involved in herbivore-induced JA bursts and plays a role in plant defense and growth
OsRCI-1	Os12g0559200	LOC_Os12g37260	defense	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.
OsRCI-1	Os12g0559200	LOC_Os12g37260	defense	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.	 These results indicate that OsRCI-1 is involved in herbivore-induced JA bursts and plays a role in plant defense and growth
OsRCI-1	Os12g0559200	LOC_Os12g37260	 ja 	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.	 These results indicate that OsRCI-1 is involved in herbivore-induced JA bursts and plays a role in plant defense and growth
OsRCI2-5	Os03g0286900	LOC_Os03g17790	resistance	Cloning and characterization of the drought-resistance OsRCI2-5 gene in rice (Oryza sativa L.).	After polyethylene glycol-6000 and drought treatment, we found that the OsRCI2-5 gene improved the drought resistance of Nipponbare
OsRCI2-5	Os03g0286900	LOC_Os03g17790	flower	Cloning and characterization of the drought-resistance OsRCI2-5 gene in rice (Oryza sativa L.).	Gene expression profiling showed that the OsRCI2-5 gene was expressed in the rice leaves, stems, and flower organs
OsRCI2-5	Os03g0286900	LOC_Os03g17790	drought	Cloning and characterization of the drought-resistance OsRCI2-5 gene in rice (Oryza sativa L.).	After polyethylene glycol-6000 and drought treatment, we found that the OsRCI2-5 gene improved the drought resistance of Nipponbare
OsRCI2-5	Os03g0286900	LOC_Os03g17790	drought resistance	Cloning and characterization of the drought-resistance OsRCI2-5 gene in rice (Oryza sativa L.).	After polyethylene glycol-6000 and drought treatment, we found that the OsRCI2-5 gene improved the drought resistance of Nipponbare
OsRDCP1|OsREIW1	Os04g0530500	LOC_Os04g44820	drought	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.)	Among these paralogs, OsRDCP1 was induced by drought stress, whereas the other OsRDCP members were constitutively expressed, with OsRDCP4 transcripts expressed at the highest level in rice seedlings
OsRDCP1|OsREIW1	Os04g0530500	LOC_Os04g44820	drought	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.)	Phenotypic analysis showed that wild-type plants and the homozygous osrdcp1 G2 mutant line displayed similar phenotypes under normal growth conditions and in response to drought stress
OsRDCP1|OsREIW1	Os04g0530500	LOC_Os04g44820	drought	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.)	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.)
OsRDCP1|OsREIW1	Os04g0530500	LOC_Os04g44820	growth	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.)	Phenotypic analysis showed that wild-type plants and the homozygous osrdcp1 G2 mutant line displayed similar phenotypes under normal growth conditions and in response to drought stress
OsRDCP1|OsREIW1	Os04g0530500	LOC_Os04g44820	seedling	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.)	Among these paralogs, OsRDCP1 was induced by drought stress, whereas the other OsRDCP members were constitutively expressed, with OsRDCP4 transcripts expressed at the highest level in rice seedlings
OsRDR1	Os02g0736200	LOC_Os02g50330	resistance	A signaling cascade from miR444 to RDR1 in rice antiviral RNA silencing pathway.	Expression of miR444 is enhanced by infection of Rice stripe virus (RSV) and overexpression of miR444 improves rice resistance against RSV infection accompanied by upregulation of OsRDR1 expression
OsRDR1	Os02g0736200	LOC_Os02g50330	resistance	A signaling cascade from miR444 to RDR1 in rice antiviral RNA silencing pathway.	We also show that overexpression of miR444-resistant OsMADS57 reduced OsRDR1 expression and rice resistance against RSV infection and knockout of OsRDR1 reduced rice resistance against RSV infection
OsRDR1	Os02g0736200	LOC_Os02g50330	rice stripe virus	A signaling cascade from miR444 to RDR1 in rice antiviral RNA silencing pathway.	Expression of miR444 is enhanced by infection of Rice stripe virus (RSV) and overexpression of miR444 improves rice resistance against RSV infection accompanied by upregulation of OsRDR1 expression
OsRDR1	Os02g0736200	LOC_Os02g50330	RSV	A signaling cascade from miR444 to RDR1 in rice antiviral RNA silencing pathway.	Expression of miR444 is enhanced by infection of Rice stripe virus (RSV) and overexpression of miR444 improves rice resistance against RSV infection accompanied by upregulation of OsRDR1 expression
OsRDR1	Os02g0736200	LOC_Os02g50330	RSV	A signaling cascade from miR444 to RDR1 in rice antiviral RNA silencing pathway.	We also show that overexpression of miR444-resistant OsMADS57 reduced OsRDR1 expression and rice resistance against RSV infection and knockout of OsRDR1 reduced rice resistance against RSV infection
OsRDR6|shl-2	Os01g0527600	LOC_Os01g34350	spikelet	Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development	We isolated a rice osrdr6-1 mutant, which was temperature sensitive and showed spikelet defects
OsRDR6|shl-2	Os01g0527600	LOC_Os01g34350	disease	RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus	In three independent transgenic lines (OsRDR6AS line A, B and C) in which OsRDR6 transcription levels were reduced by 70-80% through antisense silencing, the infection and disease symptoms of RSV were shown to be significantly enhanced
OsRDR6|shl-2	Os01g0527600	LOC_Os01g34350	insect	RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus	The hypersusceptibilities of the OsRDR6AS plants were attributed not to enhanced insect infestation but to enhanced virus infection
OsRDR6|shl-2	Os01g0527600	LOC_Os01g34350	temperature	Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development	We isolated a rice osrdr6-1 mutant, which was temperature sensitive and showed spikelet defects
OsRDR6|shl-2	Os01g0527600	LOC_Os01g34350	ABA	Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells	We propose that ABA modulates PTGS through the transcriptional control of the OsRDR6 gene
OsRDR6|shl-2	Os01g0527600	LOC_Os01g34350	defense	OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus.	OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus.
OsRDR6|shl-2	Os01g0527600	LOC_Os01g34350	dwarf	OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus.	OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus.
OsRecQ1	Os11g0672700	LOC_Os11g44910	meristem	Characterization of four RecQ homologues from rice (Oryza sativa L. cv. Nipponbare)	OsRecQ1, OsRecQ886, and OsRecQsim expressions were strongly detected in meristematic tissues
OsRecQl4	Os04g0433800	LOC_Os04g35420	homologous recombination	Overexpression of OsRecQl4 and/or OsExo1 enhances DSB-induced homologous recombination in rice.	Overexpression of OsRecQl4 and/or OsExo1 enhances DSB-induced homologous recombination in rice.
OsREM20	Os07g0232100	LOC_Os07g12820	breeding	Enhancing rice grain production by manipulating the naturally evolved cis-regulatory element-containing inverted repeat sequence of OsREM20.	Importantly, we demonstrated that IR sequence variations in the OsREM20 promoter can be utilized for germplasm improvement through either genome editing or traditional breeding
OsREM4.1	Os07g0569100	LOC_Os07g38170	brassinosteroid	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.
OsREM4.1	Os07g0569100	LOC_Os07g38170	Brassinosteroid	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.
OsREM4.1	Os07g0569100	LOC_Os07g38170	Brassinosteroid Signaling	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.
OsREM4.1	Os07g0569100	LOC_Os07g38170	abscisic acid	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.
OsREX1-S	Os07g0573600	LOC_Os07g38600	transcription factor	Overexpression of rice OsREX1-S, encoding a putative component of the core general transcription and DNA repair factor IIH, renders plant cells tolerant to cadmium- and UV-induced damage by enhancing DNA excision repair.	OsREX1-S shows the highest levels of identity to Chlamydomonas reinhardtii REX1-S (referred to as CrREX1-S, in which REX denotes Required for Excision) and to yeast and human TFB5s (RNA polymerase II transcription factor B5), both of which are components of the general transcription and DNA repair factor, TFIIH
OsREX1-S	Os07g0573600	LOC_Os07g38600	tolerance	Overexpression of rice OsREX1-S, encoding a putative component of the core general transcription and DNA repair factor IIH, renders plant cells tolerant to cadmium- and UV-induced damage by enhancing DNA excision repair.	Furthermore, transgenic Arabidopsis plants expressing OsREX1-S exhibited ultraviolet-B (UVB) tolerance by reducing the amounts of cyclobutane pyrimidine dimers produced by UVB radiation
OsREX1-S	Os07g0573600	LOC_Os07g38600	nucleus	Overexpression of rice OsREX1-S, encoding a putative component of the core general transcription and DNA repair factor IIH, renders plant cells tolerant to cadmium- and UV-induced damage by enhancing DNA excision repair.	Transient expression of OsREX1-S consistently localized the protein to the nucleus of onion cells
OsREX1-S	Os07g0573600	LOC_Os07g38600	resistant	Overexpression of rice OsREX1-S, encoding a putative component of the core general transcription and DNA repair factor IIH, renders plant cells tolerant to cadmium- and UV-induced damage by enhancing DNA excision repair.	Moreover, those transgenic OsREX1-S Arabidopsis plants became resistant to bleomycin (an inducer of DNA strand break) and mitomycin C (DNA intercalating activity), compared to wild type
OsREX1-S	Os07g0573600	LOC_Os07g38600	cadmium	Overexpression of rice OsREX1-S, encoding a putative component of the core general transcription and DNA repair factor IIH, renders plant cells tolerant to cadmium- and UV-induced damage by enhancing DNA excision repair.	Screening of 40,000 Arabidopsis FOX (Full-length cDNA Over-eXpressor gene hunting system) lines expressing rice full-length cDNAs brings us to identify four cadmium (Cd)-tolerant lines, one of which carried OsREX1-S as a transgene
OsRFPH2-10	Os08g0539300	LOC_Os08g42640	defense	OsRFPH2-10, a RING-H2 Finger E3 Ubiquitin Ligase, Is Involved in Rice Antiviral Defense in the Early Stages of Rice dwarf virus Infection	OsRFPH2-10, a RING-H2 Finger E3 Ubiquitin Ligase, Is Involved in Rice Antiviral Defense in the Early Stages of Rice dwarf virus Infection
OsRFPH2-10	Os08g0539300	LOC_Os08g42640	dwarf	OsRFPH2-10, a RING-H2 Finger E3 Ubiquitin Ligase, Is Involved in Rice Antiviral Defense in the Early Stages of Rice dwarf virus Infection	OsRFPH2-10, a RING-H2 Finger E3 Ubiquitin Ligase, Is Involved in Rice Antiviral Defense in the Early Stages of Rice dwarf virus Infection
OsRFPH2-6	Os04g0580800	LOC_Os04g49160	immunity	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6
OsRH17	Os05g0110500	LOC_Os05g01990	pollen	A rice DEAD-box RNA helicase protein, OsRH17, suppresses 16S ribosomal RNA maturation in Escherichia coli.	OsRH17 was specifically expressed in pollen and differentiated callus and upregulated by application of the plant hormones naphthyl acetic acid (NAA) and abscisic acid (ABA)
OsRH17	Os05g0110500	LOC_Os05g01990	biotic stress	A rice DEAD-box RNA helicase protein, OsRH17, suppresses 16S ribosomal RNA maturation in Escherichia coli.	No visible phenotype was observed in transgenic yeast and rice (overexpressing OsRH17, N-427, and C-167, as well as OsRH17 knockdown), and even in some abiotic and biotic stresses, which could be due to the redundancy in rice under normal conditions
OsRH17	Os05g0110500	LOC_Os05g01990	abscisic acid	A rice DEAD-box RNA helicase protein, OsRH17, suppresses 16S ribosomal RNA maturation in Escherichia coli.	OsRH17 was specifically expressed in pollen and differentiated callus and upregulated by application of the plant hormones naphthyl acetic acid (NAA) and abscisic acid (ABA)
OsRH2	Os01g0639100	LOC_Os01g45190	seedlings	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Amino acid sequence analysis indicated that OsRH2 and OsRH34 had 99 % identity and 100 % similarity, and their gene expression patterns were similar in various rice tissues, but the level of OsRH2 mRNA was about 58-fold higher than that of OsRH34 mRNA in seedlings
OsRH2	Os01g0639100	LOC_Os01g45190	growth	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.
OsRH2	Os01g0639100	LOC_Os01g45190	seed	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	The phenotypes of three independent OsRH2 and OsRH34 double-knockdown transgenic lines included dwarfism, a short internode distance, reproductive delay, defective embryonic development, and a low seed setting rate
OsRH2	Os01g0639100	LOC_Os01g45190	seed	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Both OsRH2 and OsRH34 are core components of the EJC, and participate in regulating of plant height, pollen, and seed development in rice
OsRH2	Os01g0639100	LOC_Os01g45190	development	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.
OsRH2	Os01g0639100	LOC_Os01g45190	development	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Both OsRH2 and OsRH34 are core components of the EJC, and participate in regulating of plant height, pollen, and seed development in rice
OsRH2	Os01g0639100	LOC_Os01g45190	reproductive	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	The phenotypes of three independent OsRH2 and OsRH34 double-knockdown transgenic lines included dwarfism, a short internode distance, reproductive delay, defective embryonic development, and a low seed setting rate
OsRH2	Os01g0639100	LOC_Os01g45190	plant height	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Both OsRH2 and OsRH34 are core components of the EJC, and participate in regulating of plant height, pollen, and seed development in rice
OsRH2	Os01g0639100	LOC_Os01g45190	tapetum	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	In addition, the OsRH2 and OsRH34 double-knockdown transgenic lines exhibited the accumulation of unspliced rice UNDEVELOPED TAPETUM 1 mRNA
OsRH2	Os01g0639100	LOC_Os01g45190	seed development	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Both OsRH2 and OsRH34 are core components of the EJC, and participate in regulating of plant height, pollen, and seed development in rice
OsRH34	Os03g0566800	LOC_Os03g36930	seedlings	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Amino acid sequence analysis indicated that OsRH2 and OsRH34 had 99 % identity and 100 % similarity, and their gene expression patterns were similar in various rice tissues, but the level of OsRH2 mRNA was about 58-fold higher than that of OsRH34 mRNA in seedlings
OsRH34	Os03g0566800	LOC_Os03g36930	seed	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	The phenotypes of three independent OsRH2 and OsRH34 double-knockdown transgenic lines included dwarfism, a short internode distance, reproductive delay, defective embryonic development, and a low seed setting rate
OsRH34	Os03g0566800	LOC_Os03g36930	seed	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Both OsRH2 and OsRH34 are core components of the EJC, and participate in regulating of plant height, pollen, and seed development in rice
OsRH34	Os03g0566800	LOC_Os03g36930	development	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Both OsRH2 and OsRH34 are core components of the EJC, and participate in regulating of plant height, pollen, and seed development in rice
OsRH34	Os03g0566800	LOC_Os03g36930	reproductive	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	The phenotypes of three independent OsRH2 and OsRH34 double-knockdown transgenic lines included dwarfism, a short internode distance, reproductive delay, defective embryonic development, and a low seed setting rate
OsRH34	Os03g0566800	LOC_Os03g36930	plant height	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Both OsRH2 and OsRH34 are core components of the EJC, and participate in regulating of plant height, pollen, and seed development in rice
OsRH34	Os03g0566800	LOC_Os03g36930	tapetum	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	In addition, the OsRH2 and OsRH34 double-knockdown transgenic lines exhibited the accumulation of unspliced rice UNDEVELOPED TAPETUM 1 mRNA
OsRH34	Os03g0566800	LOC_Os03g36930	seed development	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	Both OsRH2 and OsRH34 are core components of the EJC, and participate in regulating of plant height, pollen, and seed development in rice
OsRH58	Os01g0970600	LOC_Os01g73900	chloroplast	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	Chloroplast localization of OsRH58 was confirmed by analyzing the expression of OsRH58-GFP fusion proteins in tobacco leaves
OsRH58	Os01g0970600	LOC_Os01g73900	chloroplast	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	These findings suggest that the chloroplast-transported OsRH58 possessing RNA chaperone activity confers stress tolerance by increasing translation of chloroplast mRNAs
OsRH58	Os01g0970600	LOC_Os01g73900	tolerance	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	These findings suggest that the chloroplast-transported OsRH58 possessing RNA chaperone activity confers stress tolerance by increasing translation of chloroplast mRNAs
OsRH58	Os01g0970600	LOC_Os01g73900	abiotic stress	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	In this study, rice OsRH58 (LOC_Os01g73900), a chloroplast-localized DEAD-box RH, was characterized for its expression patterns upon stress treatment and its functional roles using transgenic Arabidopsis plants under normal and abiotic stress conditions
OsRH58	Os01g0970600	LOC_Os01g73900	ABA	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	Expression of OsRH58 in rice was up-regulated by salt, drought, or heat stress, whereas its expression was decreased by cold, UV, or ABA treatment
OsRH58	Os01g0970600	LOC_Os01g73900	stress	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	In this study, rice OsRH58 (LOC_Os01g73900), a chloroplast-localized DEAD-box RH, was characterized for its expression patterns upon stress treatment and its functional roles using transgenic Arabidopsis plants under normal and abiotic stress conditions
OsRH58	Os01g0970600	LOC_Os01g73900	stress	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	These findings suggest that the chloroplast-transported OsRH58 possessing RNA chaperone activity confers stress tolerance by increasing translation of chloroplast mRNAs
OsRH58	Os01g0970600	LOC_Os01g73900	biotic stress	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	In this study, rice OsRH58 (LOC_Os01g73900), a chloroplast-localized DEAD-box RH, was characterized for its expression patterns upon stress treatment and its functional roles using transgenic Arabidopsis plants under normal and abiotic stress conditions
OsRH58	Os01g0970600	LOC_Os01g73900	ABA	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	Expression of OsRH58 in rice was up-regulated by salt, drought, or heat stress, whereas its expression was decreased by cold, UV, or ABA treatment
OsRH58	Os01g0970600	LOC_Os01g73900	stress tolerance	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	These findings suggest that the chloroplast-transported OsRH58 possessing RNA chaperone activity confers stress tolerance by increasing translation of chloroplast mRNAs
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	disease resistance	Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana	tomato DC3000, suggesting that OsRHC1 may confer broad-spectrum disease resistance
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	disease	Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana	tomato DC3000, suggesting that OsRHC1 may confer broad-spectrum disease resistance
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	map-based cloning	Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.).	 Using map-based cloning, we mapped the LE gene to the short arm of chromosome 3
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	R protein	Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.).	 The LE encodes a C3HC4-type RING finger protein and was expressed to relatively high levels in seeds at a late developmental stage
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	thermotolerance	A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance	A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	chloroplast	A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance	A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	grain	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 interacts with another grain size regulator, DGS1
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	grain size	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 interacts with another grain size regulator, DGS1
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	brassinosteroid	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 DGS1 ubiquitinates the BR receptor BRASSINOSTEROID INSENSITIVE 1 (BRI1) and affects its accumulation
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	BR	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 and DGS1 are involved in BR signaling
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	BR	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 DGS1 ubiquitinates the BR receptor BRASSINOSTEROID INSENSITIVE 1 (BRI1) and affects its accumulation
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	Brassinosteroid	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 DGS1 ubiquitinates the BR receptor BRASSINOSTEROID INSENSITIVE 1 (BRI1) and affects its accumulation
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	BR signaling	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 and DGS1 are involved in BR signaling
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	 BR 	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 SMG3 and DGS1 are involved in BR signaling
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	 BR 	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 DGS1 ubiquitinates the BR receptor BRASSINOSTEROID INSENSITIVE 1 (BRI1) and affects its accumulation
OsRHC1|LE|TT3.1|DGS1	Os03g0706900	LOC_Os03g49900	Ubiquitin	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	 Further analyses showed that DGS1 is an active E3 ubiquitin ligase and colocates with SMG3 in the ER
OsRHL1	Os06g0184000	LOC_Os06g08500	cytoplasm	RSL Class Transcription Factors Guide the Nuclear Localization of RHL1 to Regulate Root Hair Development.	When heterologously expressed in epidermal cells of Nicotiana benthamiana leaves, OsRHL1 was predominantly localized to the cytoplasm
OsRHP1	Os08g0492500	LOC_Os08g38460	leaf	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	In our work, OsRHP1 was expressed ubiquitously in various tissues, but its transcript is accumulated more in mature leaf
OsRHP1	Os08g0492500	LOC_Os08g38460	drought	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	Compared with wild-type (WT) rice plants, transgenic plants overexpressing OsRHP1 exhibited more tolerance to drought and salt stress
OsRHP1	Os08g0492500	LOC_Os08g38460	drought	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	These results demonstrate that overexpression of OsRHP1 substantially enhances drought and salt tolerance through increased ABA level and enhanced ABA-mediated stress response
OsRHP1	Os08g0492500	LOC_Os08g38460	salt	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	Compared with wild-type (WT) rice plants, transgenic plants overexpressing OsRHP1 exhibited more tolerance to drought and salt stress
OsRHP1	Os08g0492500	LOC_Os08g38460	salt	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	These results demonstrate that overexpression of OsRHP1 substantially enhances drought and salt tolerance through increased ABA level and enhanced ABA-mediated stress response
OsRHP1	Os08g0492500	LOC_Os08g38460	tolerance	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	Compared with wild-type (WT) rice plants, transgenic plants overexpressing OsRHP1 exhibited more tolerance to drought and salt stress
OsRHP1	Os08g0492500	LOC_Os08g38460	tolerance	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	These results demonstrate that overexpression of OsRHP1 substantially enhances drought and salt tolerance through increased ABA level and enhanced ABA-mediated stress response
OsRHP1	Os08g0492500	LOC_Os08g38460	ABA	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	These results demonstrate that overexpression of OsRHP1 substantially enhances drought and salt tolerance through increased ABA level and enhanced ABA-mediated stress response
OsRHP1	Os08g0492500	LOC_Os08g38460	salt tolerance	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	These results demonstrate that overexpression of OsRHP1 substantially enhances drought and salt tolerance through increased ABA level and enhanced ABA-mediated stress response
OsRHP1	Os08g0492500	LOC_Os08g38460	salt stress	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	Compared with wild-type (WT) rice plants, transgenic plants overexpressing OsRHP1 exhibited more tolerance to drought and salt stress
OsRHP1	Os08g0492500	LOC_Os08g38460	stress	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	Compared with wild-type (WT) rice plants, transgenic plants overexpressing OsRHP1 exhibited more tolerance to drought and salt stress
OsRHP1	Os08g0492500	LOC_Os08g38460	stress	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	These results demonstrate that overexpression of OsRHP1 substantially enhances drought and salt tolerance through increased ABA level and enhanced ABA-mediated stress response
OsRHP1	Os08g0492500	LOC_Os08g38460	ABA	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	These results demonstrate that overexpression of OsRHP1 substantially enhances drought and salt tolerance through increased ABA level and enhanced ABA-mediated stress response
OsRHP1	Os08g0492500	LOC_Os08g38460	stress response	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	These results demonstrate that overexpression of OsRHP1 substantially enhances drought and salt tolerance through increased ABA level and enhanced ABA-mediated stress response
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	blast	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene	A novel blast-inducible RING-H2 type zinc finger protein gene OsRING-1 was cloned from rice by cDNA library screening
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	root	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene	Tissue expression analysis showed that OsRING-1 was constitutively strongly expressed in roots, but faintly in stems, leaves and sheaths
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	sheath	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene	Tissue expression analysis showed that OsRING-1 was constitutively strongly expressed in roots, but faintly in stems, leaves and sheaths
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	stem	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene	Tissue expression analysis showed that OsRING-1 was constitutively strongly expressed in roots, but faintly in stems, leaves and sheaths
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	ethylene	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene	The promoter sequence analysis of OsRING-1 gene revealed that some ABA, GA, ethylene, wound, drought, heat stress and pathogen infection responsive elements were found within the OsRING-1 promoter region
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	drought	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene	The promoter sequence analysis of OsRING-1 gene revealed that some ABA, GA, ethylene, wound, drought, heat stress and pathogen infection responsive elements were found within the OsRING-1 promoter region
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	transcription regulator	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene	Taken together, OsRING-1, as a novel C3H2C3-type zinc finger protein involved in many stress responses in rice might plays a role as a transcription regulator in plant stress response signal transduction pathways
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	ja	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene	Northern analysis showed that OsRING-1 was induced in different degree by pathogen infections, SA, ABA, JA and ethephon (ET) treatments
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	tolerance	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	In contrast, RNAi-mediated OsATL38 knockdown transgenic progeny exhibited markedly increased tolerance to cold stress relative to that of wild-type plants, which indicated a negative role of OsATL38 in response to cold stress
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	cold stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	cold stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	In contrast, RNAi-mediated OsATL38 knockdown transgenic progeny exhibited markedly increased tolerance to cold stress relative to that of wild-type plants, which indicated a negative role of OsATL38 in response to cold stress
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	cold stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	These results suggested that the RING E3 Ub ligase OsATL38 negatively regulates the cold stress response in rice via mono-ubiquitination of OsGF14d 14-3-3 protein
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	In contrast, RNAi-mediated OsATL38 knockdown transgenic progeny exhibited markedly increased tolerance to cold stress relative to that of wild-type plants, which indicated a negative role of OsATL38 in response to cold stress
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	stress	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	These results suggested that the RING E3 Ub ligase OsATL38 negatively regulates the cold stress response in rice via mono-ubiquitination of OsGF14d 14-3-3 protein
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	cold	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	cold	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	In contrast, RNAi-mediated OsATL38 knockdown transgenic progeny exhibited markedly increased tolerance to cold stress relative to that of wild-type plants, which indicated a negative role of OsATL38 in response to cold stress
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	cold	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	These results suggested that the RING E3 Ub ligase OsATL38 negatively regulates the cold stress response in rice via mono-ubiquitination of OsGF14d 14-3-3 protein
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	plasma membrane	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	In this study, OsATL38 was identified as a low temperature-induced gene that encodes a rice homolog of Arabidopsis Txicos en Levadura RING-type E3 ubiquitin (Ub) ligase, which was predominantly localized to the plasma membrane
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	Ubiquitin	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	In this study, OsATL38 was identified as a low temperature-induced gene that encodes a rice homolog of Arabidopsis Txicos en Levadura RING-type E3 ubiquitin (Ub) ligase, which was predominantly localized to the plasma membrane
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	stress response	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice
OsRING-1|OsATL38	Os02g0759400	LOC_Os02g52210	stress response	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice	These results suggested that the RING E3 Ub ligase OsATL38 negatively regulates the cold stress response in rice via mono-ubiquitination of OsGF14d 14-3-3 protein
OsRINGzf1	Os04g0568900	LOC_Os04g48050	leaf	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 The OsRINGzf1 OE plants, with higher leaf-related water content (LRWC) and lower leaf water loss rate (LWLR), exhibited enhanced drought resistance, whereas the RNAi and knockout plants of OsRINGzf1 were more sensitive to drought
OsRINGzf1	Os04g0568900	LOC_Os04g48050	resistance	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.
OsRINGzf1	Os04g0568900	LOC_Os04g48050	resistance	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 Together, our data demonstrate that OsRINGzf1 positively regulates drought resistance through promoting the degradation of OsPIP2;1 to enhance water retention capacity in rice
OsRINGzf1	Os04g0568900	LOC_Os04g48050	drought	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.
OsRINGzf1	Os04g0568900	LOC_Os04g48050	drought	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 The OsRINGzf1 OE plants, with higher leaf-related water content (LRWC) and lower leaf water loss rate (LWLR), exhibited enhanced drought resistance, whereas the RNAi and knockout plants of OsRINGzf1 were more sensitive to drought
OsRINGzf1	Os04g0568900	LOC_Os04g48050	drought	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 Together, our data demonstrate that OsRINGzf1 positively regulates drought resistance through promoting the degradation of OsPIP2;1 to enhance water retention capacity in rice
OsRINGzf1	Os04g0568900	LOC_Os04g48050	R protein	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 OsRINGzf1 is the candidate gene from a drought-related quantitative trait locus (QTL) on the long arm of chromosome 4 in rice (Oryza sativa) and encodes a Really Interesting New Gene (RING) zinc finger protein 1
OsRINGzf1	Os04g0568900	LOC_Os04g48050	zinc	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 OsRINGzf1 is the candidate gene from a drought-related quantitative trait locus (QTL) on the long arm of chromosome 4 in rice (Oryza sativa) and encodes a Really Interesting New Gene (RING) zinc finger protein 1
OsRINGzf1	Os04g0568900	LOC_Os04g48050	Ubiquitin	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.
OsRINGzf1	Os04g0568900	LOC_Os04g48050	drought resistance	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.
OsRINGzf1	Os04g0568900	LOC_Os04g48050	drought resistance	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 The OsRINGzf1 OE plants, with higher leaf-related water content (LRWC) and lower leaf water loss rate (LWLR), exhibited enhanced drought resistance, whereas the RNAi and knockout plants of OsRINGzf1 were more sensitive to drought
OsRINGzf1	Os04g0568900	LOC_Os04g48050	drought resistance	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 Together, our data demonstrate that OsRINGzf1 positively regulates drought resistance through promoting the degradation of OsPIP2;1 to enhance water retention capacity in rice
OsRINGzf1	Os04g0568900	LOC_Os04g48050	water loss	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	 The OsRINGzf1 OE plants, with higher leaf-related water content (LRWC) and lower leaf water loss rate (LWLR), exhibited enhanced drought resistance, whereas the RNAi and knockout plants of OsRINGzf1 were more sensitive to drought
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	defense	Involvement of OsRIP1, a ribosome-inactivating protein from rice, in plant defense against Nilaparvata lugens.	 The data obtained in this research indicate that OsRIP1 can play a role in plant defense against herbivorous insects
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	insect	Involvement of OsRIP1, a ribosome-inactivating protein from rice, in plant defense against Nilaparvata lugens.	 OsRIP1 inactivated insect ribosomes in vitro, suggesting that its toxicity relates to the enzymatic activity of OsRIP1
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	brown planthopper	Involvement of OsRIP1, a ribosome-inactivating protein from rice, in plant defense against Nilaparvata lugens.	 Furthermore, recombinant OsRIP1 was toxic for brown planthoppers when administered through liquid artificial diet
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	phloem	Involvement of OsRIP1, a ribosome-inactivating protein from rice, in plant defense against Nilaparvata lugens.	 Over-expression of OsRIP1 in transgenic rice plants did not affect the performance of insects reared on these plants, most likely due to insufficient concentrations of OsRIP1 in the phloem
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	cell death	The type-1 ribosome inactivating protein OsRIP1 triggers caspase-independent apoptotic-like death in HeLa cells.	 OsRIP1 provoked HeLa cells to undergo caspase-independent cell death, associated with a significant transcriptional upregulation of the apoptotic gene PUMA, interferon regulatory factor 1 (IRF1) and the autophagy-related marker LC3
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	plasma membrane	The type-1 ribosome inactivating protein OsRIP1 triggers caspase-independent apoptotic-like death in HeLa cells.	 Human cervical cancer HeLa cells were incubated in the presence of OsRIP1 for 24-72 h OsRIP1 treatment yielded an anti-proliferation response of the HeLa cells and resulted in apoptotic-like blebbing of the plasma membrane without causing DNA fragmentation
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	growth	Differential effects of the recombinant type 1 ribosome-inactivating protein, OsRIP1, on growth of PSB-D and BY-2 cells.	 Our study provides the first evidence that OsRIP1 exerts differential effects on the growth of PSB-D and BY-2 cells
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	cell death	Differential effects of the recombinant type 1 ribosome-inactivating protein, OsRIP1, on growth of PSB-D and BY-2 cells.	 OsRIP1 triggered cell death in tobacco BY-2 cells but not in Arabidopsis PSB-D cells
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	cell death	Differential effects of the recombinant type 1 ribosome-inactivating protein, OsRIP1, on growth of PSB-D and BY-2 cells.	 Targeting of exogenous OsRIP1 to plant vacuoles and OsRIP1-induced accumulation of transcripts for vacuolar processing enzymes (VPEs) indicated that OsRIP1 provoked plant cell death in tobacco BY-2 cells through the activation of VPEs and subsequent vacuolar disruption, which was probably independent of its N-glycosylase activity on cytosolic ribosomes
OsRIP1|OsjRIP1.1	Os01g0160800	LOC_Os01g06740	cell death	Differential effects of the recombinant type 1 ribosome-inactivating protein, OsRIP1, on growth of PSB-D and BY-2 cells.	 The vacuole-dependent cell death pathway is associated with the lethal effect of the exogenously applied OsRIP1 on BY-2 cells
OSRIP18	Os07g0556800	LOC_Os07g37090	salt tolerance	Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants	Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants
OSRIP18	Os07g0556800	LOC_Os07g37090	abiotic stress	Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants	Our data suggested that the increased tolerance to these abiotic stresses in transgenic plants might be due to up-regulation of some stress-dependent/independent genes and OSRIP18 may be potentially useful in further improving plant tolerance to various abiotic stresses by over-expression
OSRIP18	Os07g0556800	LOC_Os07g37090	drought	Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants	Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants
OSRIP18	Os07g0556800	LOC_Os07g37090	salt	Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants	Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants
OsRKD3	Os01g0551600|Os01g0551700	LOC_Os01g37100	transcription factor	RWP-RK Domain 3 (OsRKD3) induces somatic embryogenesis in black rice.	 Furthermore, OsRKD3 was shown to mediate the transcriptional activation of a discrete gene network, which includes several transcription factors such as APETALA 2-like (AP2-like)/ETHYLENE RESPONSE FACTOR (ERF), MYB and CONSTANS-like (COL), and chromatin remodeling factors associated with hormone signal transduction, stress responses and post-embryonic pathways
OsRKD3	Os01g0551600|Os01g0551700	LOC_Os01g37100	stress	RWP-RK Domain 3 (OsRKD3) induces somatic embryogenesis in black rice.	 Furthermore, OsRKD3 was shown to mediate the transcriptional activation of a discrete gene network, which includes several transcription factors such as APETALA 2-like (AP2-like)/ETHYLENE RESPONSE FACTOR (ERF), MYB and CONSTANS-like (COL), and chromatin remodeling factors associated with hormone signal transduction, stress responses and post-embryonic pathways
OsRKD3	Os01g0551600|Os01g0551700	LOC_Os01g37100	signal transduction	RWP-RK Domain 3 (OsRKD3) induces somatic embryogenesis in black rice.	 Furthermore, OsRKD3 was shown to mediate the transcriptional activation of a discrete gene network, which includes several transcription factors such as APETALA 2-like (AP2-like)/ETHYLENE RESPONSE FACTOR (ERF), MYB and CONSTANS-like (COL), and chromatin remodeling factors associated with hormone signal transduction, stress responses and post-embryonic pathways
OsRKD3	Os01g0551600|Os01g0551700	LOC_Os01g37100	stress response	RWP-RK Domain 3 (OsRKD3) induces somatic embryogenesis in black rice.	 Furthermore, OsRKD3 was shown to mediate the transcriptional activation of a discrete gene network, which includes several transcription factors such as APETALA 2-like (AP2-like)/ETHYLENE RESPONSE FACTOR (ERF), MYB and CONSTANS-like (COL), and chromatin remodeling factors associated with hormone signal transduction, stress responses and post-embryonic pathways
OsRKD3	Os01g0551600|Os01g0551700	LOC_Os01g37100	ethylene response	RWP-RK Domain 3 (OsRKD3) induces somatic embryogenesis in black rice.	 Furthermore, OsRKD3 was shown to mediate the transcriptional activation of a discrete gene network, which includes several transcription factors such as APETALA 2-like (AP2-like)/ETHYLENE RESPONSE FACTOR (ERF), MYB and CONSTANS-like (COL), and chromatin remodeling factors associated with hormone signal transduction, stress responses and post-embryonic pathways
OsRKD3	Os01g0551600|Os01g0551700	LOC_Os01g37100	somatic embryogenesis	RWP-RK Domain 3 (OsRKD3) induces somatic embryogenesis in black rice	RWP-RK Domain 3 (OsRKD3) induces somatic embryogenesis in black rice
OsRLCK102	Os03g0170400	LOC_Os03g07430	resistance	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Silencing of OsRLCK102 compromised receptor kinase XA21-mediated resistance to Xanthomonas oryzae pv
OsRLCK102	Os03g0170400	LOC_Os03g07430	seed	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Plants with silenced OsRLCK102 exhibit architecture alterations, including reduced plant height, enlarged angle of the lamina joint, decreased rates of seed setting and enhanced sensitivity to hormone brassinolide (BR)
OsRLCK102	Os03g0170400	LOC_Os03g07430	development	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice
OsRLCK102	Os03g0170400	LOC_Os03g07430	development	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Collectively, our study reveals that OsRLCK102 positively regulates XA21-mediated immunity and negatively regulates rice development through BR signaling in rice
OsRLCK102	Os03g0170400	LOC_Os03g07430	architecture	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Plants with silenced OsRLCK102 exhibit architecture alterations, including reduced plant height, enlarged angle of the lamina joint, decreased rates of seed setting and enhanced sensitivity to hormone brassinolide (BR)
OsRLCK102	Os03g0170400	LOC_Os03g07430	BR	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Collectively, our study reveals that OsRLCK102 positively regulates XA21-mediated immunity and negatively regulates rice development through BR signaling in rice
OsRLCK102	Os03g0170400	LOC_Os03g07430	plant height	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Plants with silenced OsRLCK102 exhibit architecture alterations, including reduced plant height, enlarged angle of the lamina joint, decreased rates of seed setting and enhanced sensitivity to hormone brassinolide (BR)
OsRLCK102	Os03g0170400	LOC_Os03g07430	immunity	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice
OsRLCK102	Os03g0170400	LOC_Os03g07430	immunity	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Collectively, our study reveals that OsRLCK102 positively regulates XA21-mediated immunity and negatively regulates rice development through BR signaling in rice
OsRLCK102	Os03g0170400	LOC_Os03g07430	BR signaling	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Collectively, our study reveals that OsRLCK102 positively regulates XA21-mediated immunity and negatively regulates rice development through BR signaling in rice
OsRLCK102	Os03g0170400	LOC_Os03g07430	lamina	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Plants with silenced OsRLCK102 exhibit architecture alterations, including reduced plant height, enlarged angle of the lamina joint, decreased rates of seed setting and enhanced sensitivity to hormone brassinolide (BR)
OsRLCK102	Os03g0170400	LOC_Os03g07430	plant development	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice
OsRLCK102	Os03g0170400	LOC_Os03g07430	Kinase	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice
OsRLCK102	Os03g0170400	LOC_Os03g07430	Kinase	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Silencing of OsRLCK102 compromised receptor kinase XA21-mediated resistance to Xanthomonas oryzae pv
OsRLCK102	Os03g0170400	LOC_Os03g07430	lamina joint	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Plants with silenced OsRLCK102 exhibit architecture alterations, including reduced plant height, enlarged angle of the lamina joint, decreased rates of seed setting and enhanced sensitivity to hormone brassinolide (BR)
OsRLCK102	Os03g0170400	LOC_Os03g07430	angle of the lamina joint	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Plants with silenced OsRLCK102 exhibit architecture alterations, including reduced plant height, enlarged angle of the lamina joint, decreased rates of seed setting and enhanced sensitivity to hormone brassinolide (BR)
OsRLCK102	Os03g0170400	LOC_Os03g07430	receptor kinase	The Receptor-Like Cytoplasmic Kinase OsRLCK102 Regulates XA21-Mediated Immunity and Plant Development in Rice	Silencing of OsRLCK102 compromised receptor kinase XA21-mediated resistance to Xanthomonas oryzae pv
OsRLCK107	Os03g0274800	LOC_Os03g16740	panicle	Four receptor-like cytoplasmic kinases regulate development and immunity in rice.	Transgenic plants silenced for OsRLCK57 had significantly fewer tillers and reduced panicle secondary branching, and lines silenced for OsRLCK107 and OsRLCK118 produce fewer seeds
OsRLCK118	Os03g0821900	LOC_Os03g60710	panicle	Four receptor-like cytoplasmic kinases regulate development and immunity in rice.	Transgenic plants silenced for OsRLCK57 had significantly fewer tillers and reduced panicle secondary branching, and lines silenced for OsRLCK107 and OsRLCK118 produce fewer seeds
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	peptidoglycan and chitin signaling	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity	Here, we demonstrate that the rice LysM receptor-like kinase OsCERK1, a key component of the chitin elicitor signaling pathway, also plays an important role in PGN-triggered immunity in rice.
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	chitin signaling	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity	Here, we demonstrate that the rice LysM receptor-like kinase OsCERK1, a key component of the chitin elicitor signaling pathway, also plays an important role in PGN-triggered immunity in rice.
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	peptidoglycan signaling	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity	Here, we demonstrate that the rice LysM receptor-like kinase OsCERK1, a key component of the chitin elicitor signaling pathway, also plays an important role in PGN-triggered immunity in rice.
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	innate immunity	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity	Here, we demonstrate that the rice LysM receptor-like kinase OsCERK1, a key component of the chitin elicitor signaling pathway, also plays an important role in PGN-triggered immunity in rice.
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	leaf	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	BML is a candidate gene associated with leaf senescence, ROS regulation, and disease response, also involved in hormone signaling in rice
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	leaf senescence	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	BML is a candidate gene associated with leaf senescence, ROS regulation, and disease response, also involved in hormone signaling in rice
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	transcription factor	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The bml mutant showed excessive accumulation of reactive oxygen species (ROS), increased activities of superoxide dismutase, catalase, and malondialdehyde, upregulation of senescence-induced STAY-GREEN genes and senescence-related transcription factors, and down regulation of photosynthesis-related genes
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	senescence	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The bml mutants had brown midribs in their leaves and initiated senescence prematurely, at the onset of heading
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	resistance	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	In pathogen response, bml demonstrated higher resistance against Xanthomonas oryzae pv
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	map-based cloning	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	A map-based cloning using insertion/deletion markers confirmed that BML was located in the 57
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	ABA	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The levels of abscisic acid (ABA) and jasmonic acid (JA) were increased in bml with the upregulation of some ABA and JA biosynthetic genes
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	disease	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	BML is a candidate gene associated with leaf senescence, ROS regulation, and disease response, also involved in hormone signaling in rice
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	jasmonic	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The levels of abscisic acid (ABA) and jasmonic acid (JA) were increased in bml with the upregulation of some ABA and JA biosynthetic genes
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	jasmonic acid	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The levels of abscisic acid (ABA) and jasmonic acid (JA) were increased in bml with the upregulation of some ABA and JA biosynthetic genes
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	ABA	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The levels of abscisic acid (ABA) and jasmonic acid (JA) were increased in bml with the upregulation of some ABA and JA biosynthetic genes
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	ja	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The levels of abscisic acid (ABA) and jasmonic acid (JA) were increased in bml with the upregulation of some ABA and JA biosynthetic genes
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	JA	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The levels of abscisic acid (ABA) and jasmonic acid (JA) were increased in bml with the upregulation of some ABA and JA biosynthetic genes
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	pathogen	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	In pathogen response, bml demonstrated higher resistance against Xanthomonas oryzae pv
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	abscisic acid	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The levels of abscisic acid (ABA) and jasmonic acid (JA) were increased in bml with the upregulation of some ABA and JA biosynthetic genes
OsRLCK176|BML	Os05g0110900	LOC_Os05g02020	reactive oxygen species	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature Leaf Senescence and the Induction of Defense Responses.	The bml mutant showed excessive accumulation of reactive oxygen species (ROS), increased activities of superoxide dismutase, catalase, and malondialdehyde, upregulation of senescence-induced STAY-GREEN genes and senescence-related transcription factors, and down regulation of photosynthesis-related genes
OsRLCK185	Os05g0372100	LOC_Os05g30870	defense	A receptor-like cytoplasmic kinase targeted by a plant pathogen effector is directly phosphorylated by the chitin receptor and mediates rice immunity	Silencing OsRLCK185 suppressed peptidoglycan- and chitin-induced immune responses, including MAP kinase activation and defense-gene expression
OsRLCK241	Os07g0686800	LOC_Os07g48730	growth	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Under normal conditions, we did not observe any measurable discrepancies between the development and growth of WT and OsRLCK241 transgenic plants
OsRLCK241	Os07g0686800	LOC_Os07g48730	development	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Under normal conditions, we did not observe any measurable discrepancies between the development and growth of WT and OsRLCK241 transgenic plants
OsRLCK241	Os07g0686800	LOC_Os07g48730	drought	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)
OsRLCK241	Os07g0686800	LOC_Os07g48730	drought	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	In OsRLCK241 transgenic plants, the overexpression of OsRLCK241 conferred improved tolerance to salt and drought stresses
OsRLCK241	Os07g0686800	LOC_Os07g48730	drought	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	OsRLCK241 expression improved ROS detoxification by enhancing the activities of ROS scavengers as well as the accumulation of compatible osmolytes to alleviate the osmotic stress evoked by salt and drought stresses
OsRLCK241	Os07g0686800	LOC_Os07g48730	drought	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Additionally, several stress-responsive genes showed higher expression levels in OsRLCK241 transgenic plants upon exposure to salt and drought conditions
OsRLCK241	Os07g0686800	LOC_Os07g48730	drought	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Collectively, our observations suggest that OsRLCK241 improved salt and drought tolerance in rice is mainly due to improved ROS detoxification, increased accumulation of osmolytes, and altered expression of stress-responsive genes
OsRLCK241	Os07g0686800	LOC_Os07g48730	salt	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)
OsRLCK241	Os07g0686800	LOC_Os07g48730	salt	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	In OsRLCK241 transgenic plants, the overexpression of OsRLCK241 conferred improved tolerance to salt and drought stresses
OsRLCK241	Os07g0686800	LOC_Os07g48730	salt	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	OsRLCK241 expression improved ROS detoxification by enhancing the activities of ROS scavengers as well as the accumulation of compatible osmolytes to alleviate the osmotic stress evoked by salt and drought stresses
OsRLCK241	Os07g0686800	LOC_Os07g48730	salt	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Additionally, several stress-responsive genes showed higher expression levels in OsRLCK241 transgenic plants upon exposure to salt and drought conditions
OsRLCK241	Os07g0686800	LOC_Os07g48730	salt	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Collectively, our observations suggest that OsRLCK241 improved salt and drought tolerance in rice is mainly due to improved ROS detoxification, increased accumulation of osmolytes, and altered expression of stress-responsive genes
OsRLCK241	Os07g0686800	LOC_Os07g48730	tolerance	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)
OsRLCK241	Os07g0686800	LOC_Os07g48730	tolerance	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	In OsRLCK241 transgenic plants, the overexpression of OsRLCK241 conferred improved tolerance to salt and drought stresses
OsRLCK241	Os07g0686800	LOC_Os07g48730	tolerance	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Collectively, our observations suggest that OsRLCK241 improved salt and drought tolerance in rice is mainly due to improved ROS detoxification, increased accumulation of osmolytes, and altered expression of stress-responsive genes
OsRLCK241	Os07g0686800	LOC_Os07g48730	drought tolerance	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)
OsRLCK241	Os07g0686800	LOC_Os07g48730	drought tolerance	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	Collectively, our observations suggest that OsRLCK241 improved salt and drought tolerance in rice is mainly due to improved ROS detoxification, increased accumulation of osmolytes, and altered expression of stress-responsive genes
OsRLCK241	Os07g0686800	LOC_Os07g48730	stress	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	OsRLCK241 expression improved ROS detoxification by enhancing the activities of ROS scavengers as well as the accumulation of compatible osmolytes to alleviate the osmotic stress evoked by salt and drought stresses
OsRLCK241	Os07g0686800	LOC_Os07g48730	drought stress	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	In OsRLCK241 transgenic plants, the overexpression of OsRLCK241 conferred improved tolerance to salt and drought stresses
OsRLCK241	Os07g0686800	LOC_Os07g48730	drought stress	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	OsRLCK241 expression improved ROS detoxification by enhancing the activities of ROS scavengers as well as the accumulation of compatible osmolytes to alleviate the osmotic stress evoked by salt and drought stresses
OsRLCK241	Os07g0686800	LOC_Os07g48730	osmotic stress	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.)	OsRLCK241 expression improved ROS detoxification by enhancing the activities of ROS scavengers as well as the accumulation of compatible osmolytes to alleviate the osmotic stress evoked by salt and drought stresses
OsRLCK253	Os08g0374600	LOC_Os08g28710	yield	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Their stress-inducible expression provided the protection against yield loss in transgenic plants, indicating the agronomic relevance of OsSAP11 and OsRLCK253 in conferring abiotic stress tolerance
OsRLCK253	Os08g0374600	LOC_Os08g28710	abiotic stress	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Their stress-inducible expression provided the protection against yield loss in transgenic plants, indicating the agronomic relevance of OsSAP11 and OsRLCK253 in conferring abiotic stress tolerance
OsRLCK253	Os08g0374600	LOC_Os08g28710	abiotic stress	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants
OsRLCK253	Os08g0374600	LOC_Os08g28710	salt	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Functionally, both OsSAP11 and OsRLCK253 could improve the water-deficit and salt stress tolerance in transgenic Arabidopsis plants via a signaling pathway affecting the expression of several common endogenous genes
OsRLCK253	Os08g0374600	LOC_Os08g28710	salt stress	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Functionally, both OsSAP11 and OsRLCK253 could improve the water-deficit and salt stress tolerance in transgenic Arabidopsis plants via a signaling pathway affecting the expression of several common endogenous genes
OsRLCK311	Os11g0168600	LOC_Os11g06780	seedlings	A Cytoplasmic Receptor-like Kinase Contributes to Salinity Tolerance.	Overexpression of OsRLCK311 full-length protein (RLCK311FL) and the C-terminus of OsRLCK311 (ΔN) in Arabidopsis confirmed its role in salinity tolerance, both in seedlings and mature plants
OsRLCK311	Os11g0168600	LOC_Os11g06780	growth	A Cytoplasmic Receptor-like Kinase Contributes to Salinity Tolerance.	We suggest that the rice OsRLCK311 play a role in regulating the plant growth response under saline conditions via the regulation of the stomata response to stress
OsRLCK311	Os11g0168600	LOC_Os11g06780	salinity	A Cytoplasmic Receptor-like Kinase Contributes to Salinity Tolerance.	Overexpression of OsRLCK311 full-length protein (RLCK311FL) and the C-terminus of OsRLCK311 (ΔN) in Arabidopsis confirmed its role in salinity tolerance, both in seedlings and mature plants
OsRLCK311	Os11g0168600	LOC_Os11g06780	stress	A Cytoplasmic Receptor-like Kinase Contributes to Salinity Tolerance.	We suggest that the rice OsRLCK311 play a role in regulating the plant growth response under saline conditions via the regulation of the stomata response to stress
OsRLCK311	Os11g0168600	LOC_Os11g06780	plant growth	A Cytoplasmic Receptor-like Kinase Contributes to Salinity Tolerance.	We suggest that the rice OsRLCK311 play a role in regulating the plant growth response under saline conditions via the regulation of the stomata response to stress
OsRLCK311	Os11g0168600	LOC_Os11g06780	plasma membrane	A Cytoplasmic Receptor-like Kinase Contributes to Salinity Tolerance.	Protein interaction assays indicated that OsRLCK311 and ΔN interacted in-vivo with the plasma membrane AQP AtPIP2;1
OsRLCK311	Os11g0168600	LOC_Os11g06780	stomata	A Cytoplasmic Receptor-like Kinase Contributes to Salinity Tolerance.	We suggest that the rice OsRLCK311 play a role in regulating the plant growth response under saline conditions via the regulation of the stomata response to stress
OsRLCK57	Os01g0973500	LOC_Os01g74200	panicle	Four receptor-like cytoplasmic kinases regulate development and immunity in rice.	Transgenic plants silenced for OsRLCK57 had significantly fewer tillers and reduced panicle secondary branching, and lines silenced for OsRLCK107 and OsRLCK118 produce fewer seeds
OsRLR1	Os10g0163040	LOC_Os10g07978	transcription factor	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19	Moreover, we found that OsRLR1 mediates the defence response through direct interaction in the nucleus with the transcription factor OsWRKY19
OsRLR1	Os10g0163040	LOC_Os10g07978	resistance	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19
OsRLR1	Os10g0163040	LOC_Os10g07978	disease	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19
OsRLR1	Os10g0163040	LOC_Os10g07978	disease resistance	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19
OsRLR1	Os10g0163040	LOC_Os10g07978	nucleus	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19	Moreover, we found that OsRLR1 mediates the defence response through direct interaction in the nucleus with the transcription factor OsWRKY19
OsRLR1	Os10g0163040	LOC_Os10g07978	defence	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19	Moreover, we found that OsRLR1 mediates the defence response through direct interaction in the nucleus with the transcription factor OsWRKY19
OsRLR1	Os10g0163040	LOC_Os10g07978	defence response	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19	Moreover, we found that OsRLR1 mediates the defence response through direct interaction in the nucleus with the transcription factor OsWRKY19
OsRLR4	Os04g0686200	LOC_Os04g58960	root	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.
OsRLR4	Os04g0686200	LOC_Os04g58960	root	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 Here, the two loss-of-function T-DNA insertion mutants of root length regulator 4 (OsRLR4), osrlr4-1 and osrlr4-2 with longer PR, and three OsRLR4 overexpression lines, OE-OsRLR4-1/-2/-3 with shorter PR compared to the wild type, Hwayoung (WT/HY), were identified
OsRLR4	Os04g0686200	LOC_Os04g58960	root	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 OsRLR4 controls PR development by regulating auxin accumulation in the PR tip and thus the root apical meristem activity
OsRLR4	Os04g0686200	LOC_Os04g58960	development	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.
OsRLR4	Os04g0686200	LOC_Os04g58960	development	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 OsRLR4 controls PR development by regulating auxin accumulation in the PR tip and thus the root apical meristem activity
OsRLR4	Os04g0686200	LOC_Os04g58960	auxin	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 OsRLR4 controls PR development by regulating auxin accumulation in the PR tip and thus the root apical meristem activity
OsRLR4	Os04g0686200	LOC_Os04g58960	auxin	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 A series of biochemical and genetic analyses demonstrated that OsRLR4 functions directly upstream of the auxin transporter OsAUX1
OsRLR4	Os04g0686200	LOC_Os04g58960	domestication	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 Phylogenetic analysis of OsRLR4 from wild and cultivated rice indicated that it is under selective sweeps, suggesting its potential role in domestication
OsRLR4	Os04g0686200	LOC_Os04g58960	root development	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.
OsRLR4	Os04g0686200	LOC_Os04g58960	meristem	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 OsRLR4 controls PR development by regulating auxin accumulation in the PR tip and thus the root apical meristem activity
OsRLR4	Os04g0686200	LOC_Os04g58960	transporter	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 A series of biochemical and genetic analyses demonstrated that OsRLR4 functions directly upstream of the auxin transporter OsAUX1
OsRLR4	Os04g0686200	LOC_Os04g58960	auxin transport	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 A series of biochemical and genetic analyses demonstrated that OsRLR4 functions directly upstream of the auxin transporter OsAUX1
OsRLR4	Os04g0686200	LOC_Os04g58960	root apical meristem	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 OsRLR4 controls PR development by regulating auxin accumulation in the PR tip and thus the root apical meristem activity
OsRLR4	Os04g0686200	LOC_Os04g58960	primary root	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.
OsRLR4	Os04g0686200	LOC_Os04g58960	root length	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	 Here, the two loss-of-function T-DNA insertion mutants of root length regulator 4 (OsRLR4), osrlr4-1 and osrlr4-2 with longer PR, and three OsRLR4 overexpression lines, OE-OsRLR4-1/-2/-3 with shorter PR compared to the wild type, Hwayoung (WT/HY), were identified
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root development	RNAi knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice	Our results suggest that OsRMC of the DUF26 subfamily involved in JA signal transduction mediates root development and negatively regulates root curling in rice
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salinity	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	Among these, we have chosen OsRMC to study its transcriptional regulation in rice seedlings subjected to high salinity
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salinity	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	To investigate how OsRMC is regulated in response to high salinity, a salt-induced rice cDNA expression library was constructed and subsequently screened using the yeast one-hybrid system and the OsRMC promoter as bait
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	seed	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	The results show that knocking down the expression level of OsRMC in transgenic rice led to insensitive seed germination, enhanced growth inhibition, and improved salt stress tolerance to NaCl than in untransgenic plants
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	 ja 	RNAi knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice	Our results suggest that OsRMC of the DUF26 subfamily involved in JA signal transduction mediates root development and negatively regulates root curling in rice
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	transcription factor	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root	RNAi knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice	Thus, this gene was renamed Oryza sativa root meander curling (OsRMC)
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root	RNAi knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice	Our results suggest that OsRMC of the DUF26 subfamily involved in JA signal transduction mediates root development and negatively regulates root curling in rice
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	growth	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	The results show that knocking down the expression level of OsRMC in transgenic rice led to insensitive seed germination, enhanced growth inhibition, and improved salt stress tolerance to NaCl than in untransgenic plants
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	biomass	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	Here, we evaluated the role of a previously clarified gene encoding a receptor-like protein from rice, OsRMC, in the regulation of Fe acquisition by comparing Fe concentration, biomass, and expression patterns of genes associated with Fe mobilization and transport in wild-type (WT) rice with those in OsRMC overexpression and RNA interference (RNAi) knockdown transgenic rice plants
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt stress	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	sativa root meander curling (OsRMC), has shown drastically increased abundance in response to salt stress during the initial phase
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt stress	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	OsRMC RNA interference transgenic rice has been generated to assess the function of OsRMC in the salt stress response
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt stress	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	The results show that knocking down the expression level of OsRMC in transgenic rice led to insensitive seed germination, enhanced growth inhibition, and improved salt stress tolerance to NaCl than in untransgenic plants
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root development	RNAi knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice	Here, we describe a JA-induced putative receptor-like protein (OsRLK, AAL87185) functioning in root development in rice
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	shoot	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	Expression of OsRMC was upregulated in both shoots and roots upon exposure of WT to Fe-deficient medium
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	shoot	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	Expression levels of OsRMC were positively correlated with Fe concentration in rice plants under both Fe-sufficient and Fe-deficient conditions such that overexpression and RNAi lines had higher and lower Fe concentration in both roots and shoots than WT plants, respectively
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	growth	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	OsRMC may also play a role in regulation of Fe deficiency-induced changes in root growth, as evidenced by greater and smaller root systems of OsRMC overexpression lines and RNAi lines than WT under Fe-deficient conditions, respectively
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	growth	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	These novel findings highlight an important role of OsRMC played in mediation of Fe acquisition and root growth in rice, particularly under Fe-deficient conditions
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	seed	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	Moreover, overexpression of OsRMC conferred greater accumulation of Fe in mature seeds under Fe-sufficient conditions
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	sativa root meander curling (OsRMC), has shown drastically increased abundance in response to salt stress during the initial phase
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	Expression of OsRMC was upregulated in both shoots and roots upon exposure of WT to Fe-deficient medium
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	Expression levels of OsRMC were positively correlated with Fe concentration in rice plants under both Fe-sufficient and Fe-deficient conditions such that overexpression and RNAi lines had higher and lower Fe concentration in both roots and shoots than WT plants, respectively
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	OsRMC may also play a role in regulation of Fe deficiency-induced changes in root growth, as evidenced by greater and smaller root systems of OsRMC overexpression lines and RNAi lines than WT under Fe-deficient conditions, respectively
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root	A receptor-like protein RMC is involved in regulation of iron acquisition in rice	These novel findings highlight an important role of OsRMC played in mediation of Fe acquisition and root growth in rice, particularly under Fe-deficient conditions
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt stress	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	OsRMC encodes a receptor-like kinase described as a negative regulator of salt stress responses in rice
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt stress	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	seedling	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	Among these, we have chosen OsRMC to study its transcriptional regulation in rice seedlings subjected to high salinity
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	root	RNAi knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice	Here, we describe a JA-induced putative receptor-like protein (OsRLK, AAL87185) functioning in root development in rice
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	seed germination	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	The results show that knocking down the expression level of OsRMC in transgenic rice led to insensitive seed germination, enhanced growth inhibition, and improved salt stress tolerance to NaCl than in untransgenic plants
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	OsRMC encodes a receptor-like kinase described as a negative regulator of salt stress responses in rice
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	To investigate how OsRMC is regulated in response to high salinity, a salt-induced rice cDNA expression library was constructed and subsequently screened using the yeast one-hybrid system and the OsRMC promoter as bait
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	sativa root meander curling (OsRMC), has shown drastically increased abundance in response to salt stress during the initial phase
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	OsRMC RNA interference transgenic rice has been generated to assess the function of OsRMC in the salt stress response
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	salt	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis	The results show that knocking down the expression level of OsRMC in transgenic rice led to insensitive seed germination, enhanced growth inhibition, and improved salt stress tolerance to NaCl than in untransgenic plants
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	defense	Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins.	 Remarkably, knockdown and overexpression of OsRMC reduced and enhanced rice defense against M
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	defense	Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins.	 oryzae, respectively, demonstrating that inhibition of CBM1-containing fungal enzymes by OsRMC is crucial for rice defense
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	blast	Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins.	 Here, we show that the rice cysteine-rich repeat secretion protein OsRMC binds to and inhibits xylanase MoCel10A of the blast fungus pathogen Magnaporthe oryzae, interfering with its access to the rice cell wall and degradation of rice xylan
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	magnaporthe oryzae	Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins.	 Here, we show that the rice cysteine-rich repeat secretion protein OsRMC binds to and inhibits xylanase MoCel10A of the blast fungus pathogen Magnaporthe oryzae, interfering with its access to the rice cell wall and degradation of rice xylan
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	pathogen	Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins.	 Here, we show that the rice cysteine-rich repeat secretion protein OsRMC binds to and inhibits xylanase MoCel10A of the blast fungus pathogen Magnaporthe oryzae, interfering with its access to the rice cell wall and degradation of rice xylan
OsRMC|OsRLK	Os04g0659300	LOC_Os04g56430	cell wall	Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins.	 Here, we show that the rice cysteine-rich repeat secretion protein OsRMC binds to and inhibits xylanase MoCel10A of the blast fungus pathogen Magnaporthe oryzae, interfering with its access to the rice cell wall and degradation of rice xylan
OsRMR1	Os03g0167500	LOC_Os03g07130	seed	The rice RMR1 associates with a distinct prevacuolar compartment for the protein storage vacuole pathway	Immunogold electron microscopy (EM) with specific OsRMR1 antibodies showed that OsRMR1 proteins were found in the Golgi apparatus, TGN, and a distinct organelle with characteristics of PVC in both rice culture cells and developing rice seeds, as well as the protein body type II (PBII) or PSV in developing rice seeds
OsRMT1	Os04g0603200	LOC_Os04g51400	salt	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	By contrast, OsRMT1 is predominantly found in the nucleus and microtubules and its degradation is inhibited under salt stress
OsRMT1	Os04g0603200	LOC_Os04g51400	salt	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Overexpression of OsRMT1 in Arabidopsis resulted in increased tolerance to salt stress
OsRMT1	Os04g0603200	LOC_Os04g51400	salt	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Our findings suggest that the abundance of microtubule-associated OsRMT1 is strictly regulated, and OsRMT1 may play a relevant role in salt stress response by modulating levels of its target proteins
OsRMT1	Os04g0603200	LOC_Os04g51400	tolerance	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Overexpression of OsRMT1 in Arabidopsis resulted in increased tolerance to salt stress
OsRMT1	Os04g0603200	LOC_Os04g51400	salt stress	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	By contrast, OsRMT1 is predominantly found in the nucleus and microtubules and its degradation is inhibited under salt stress
OsRMT1	Os04g0603200	LOC_Os04g51400	salt stress	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Overexpression of OsRMT1 in Arabidopsis resulted in increased tolerance to salt stress
OsRMT1	Os04g0603200	LOC_Os04g51400	salt stress	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Our findings suggest that the abundance of microtubule-associated OsRMT1 is strictly regulated, and OsRMT1 may play a relevant role in salt stress response by modulating levels of its target proteins
OsRMT1	Os04g0603200	LOC_Os04g51400	stress	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	By contrast, OsRMT1 is predominantly found in the nucleus and microtubules and its degradation is inhibited under salt stress
OsRMT1	Os04g0603200	LOC_Os04g51400	stress	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Overexpression of OsRMT1 in Arabidopsis resulted in increased tolerance to salt stress
OsRMT1	Os04g0603200	LOC_Os04g51400	stress	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Our findings suggest that the abundance of microtubule-associated OsRMT1 is strictly regulated, and OsRMT1 may play a relevant role in salt stress response by modulating levels of its target proteins
OsRMT1	Os04g0603200	LOC_Os04g51400	nucleus	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	By contrast, OsRMT1 is predominantly found in the nucleus and microtubules and its degradation is inhibited under salt stress
OsRMT1	Os04g0603200	LOC_Os04g51400	stress response	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Our findings suggest that the abundance of microtubule-associated OsRMT1 is strictly regulated, and OsRMT1 may play a relevant role in salt stress response by modulating levels of its target proteins
OsRNS1	Os07g0630400	LOC_Os07g43670	root	Tissue-specific enhancement of OsRNS1 with root-preferred expression is required for the increase of crop yield.	 METHODS: osrns1 mutant had defects in root development based on T-DNA insertional mutant screening and CRISPR technology
OsRNS1	Os07g0630400	LOC_Os07g43670	root	Tissue-specific enhancement of OsRNS1 with root-preferred expression is required for the increase of crop yield.	 RESULTS: OsRNS1 was found to be involved in root development through T-DNA insertional mutant analysis and gene editing mutant analysis
OsRNS1	Os07g0630400	LOC_Os07g43670	development	Tissue-specific enhancement of OsRNS1 with root-preferred expression is required for the increase of crop yield.	 METHODS: osrns1 mutant had defects in root development based on T-DNA insertional mutant screening and CRISPR technology
OsRNS1	Os07g0630400	LOC_Os07g43670	development	Tissue-specific enhancement of OsRNS1 with root-preferred expression is required for the increase of crop yield.	 RESULTS: OsRNS1 was found to be involved in root development through T-DNA insertional mutant analysis and gene editing mutant analysis
OsRNS1	Os07g0630400	LOC_Os07g43670	root development	Tissue-specific enhancement of OsRNS1 with root-preferred expression is required for the increase of crop yield.	 METHODS: osrns1 mutant had defects in root development based on T-DNA insertional mutant screening and CRISPR technology
OsRNS1	Os07g0630400	LOC_Os07g43670	root development	Tissue-specific enhancement of OsRNS1 with root-preferred expression is required for the increase of crop yield.	 RESULTS: OsRNS1 was found to be involved in root development through T-DNA insertional mutant analysis and gene editing mutant analysis
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	dwarf	Cloning and characterization of an RNase-related protein gene preferentially expressed in rice stems	OsRRP is preferentially expressed in stems of wild-type rice and is significantly down-regulated in an increased tillering dwarf mutant ext37
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	tillering	Cloning and characterization of an RNase-related protein gene preferentially expressed in rice stems	OsRRP is preferentially expressed in stems of wild-type rice and is significantly down-regulated in an increased tillering dwarf mutant ext37
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	seedling	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice	The seedlings overexpressing OsRNS4 had longer coleoptiles and first leaves than wild-type seedlings under red light (R) and far-red light (FR), suggesting negative regulation of OsRNS4 in photomorphogenesis in rice seedlings
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	seedling	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice	Moreover, ABA-induced growth inhibition of rice seedlings was significantly increased in the OsRNS4-overexpression (OsRNS4-OX) lines compared with that in WT, suggesting that OsRNS4 probably acts as a positive regulator in ABA responses in rice seedlings
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	tiller	Cloning and characterization of an RNase-related protein gene preferentially expressed in rice stems	OsRRP is preferentially expressed in stems of wild-type rice and is significantly down-regulated in an increased tillering dwarf mutant ext37
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	salinity	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice	Here, we investigated the expression patterns and roles of an S-like RNase gene, OsRNS4, in abscisic acid (ABA)-mediated responses and phytochrome-mediated light responses as well as salinity tolerance in rice
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	salinity	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice	In addition, our results demonstrate that OsRNS4-OX lines have enhanced tolerance to high salinity compared to WT
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	salinity	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	growth	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice	Moreover, ABA-induced growth inhibition of rice seedlings was significantly increased in the OsRNS4-overexpression (OsRNS4-OX) lines compared with that in WT, suggesting that OsRNS4 probably acts as a positive regulator in ABA responses in rice seedlings
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	ABA	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice	Moreover, ABA-induced growth inhibition of rice seedlings was significantly increased in the OsRNS4-overexpression (OsRNS4-OX) lines compared with that in WT, suggesting that OsRNS4 probably acts as a positive regulator in ABA responses in rice seedlings
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	salt	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice	OsRNS4 expression was regulated by salt, PEG and ABA
OsRNS4|OsRRP	Os09g0537700	LOC_Os09g36680	stem	Cloning and characterization of an RNase-related protein gene preferentially expressed in rice stems	OsRRP is preferentially expressed in stems of wild-type rice and is significantly down-regulated in an increased tillering dwarf mutant ext37
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	leaf	The Rice High-Affinity Potassium Transporter1;1 Is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Taken together, these results suggest that OsHKT1;1 has a role in controlling Na(+) concentration and preventing sodium toxicity in leaf blades and is regulated by the OsMYBc transcription factor
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	salt	The Rice High-Affinity Potassium Transporter1;1 Is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Knockout of OsMYBc resulted in a reduction in NaCl-induced expression of OsHKT1;1 and salt sensitivity
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	transcription factor	The Rice High-Affinity Potassium Transporter1;1 Is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Taken together, these results suggest that OsHKT1;1 has a role in controlling Na(+) concentration and preventing sodium toxicity in leaf blades and is regulated by the OsMYBc transcription factor
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	Salt Sensitivity	The Rice High-Affinity Potassium Transporter1;1 Is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Knockout of OsMYBc resulted in a reduction in NaCl-induced expression of OsHKT1;1 and salt sensitivity
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	transcription factor	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	salt	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	salt	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	 These findings uncover a regulatory mechanism of salt response that fine-tunes OsHKT1;1 transcription by ubiquitination of OsMYBc
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	salt stress	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	R protein	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	 A yeast two-hybrid screen using the OsMYBc N terminus as bait identified a rice MYBc stress-related RING finger protein (OsMSRFP)
OsROC1|OsMYBc	Os09g0299200	LOC_Os09g12770	transporter	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	leaf	The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces	In the paddy field, the bright green leaf (bgl) mutants of rice (Oryza sativa) exhibit a luminous green color that is clearly distinguishable from the normal green of wild-type plants
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	leaf	The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces	Transmission and scanning electron microscopy revealed that small cuticular papillae (or small papillae; SP), nipple-like structures, are absent on the adaxial and abaxial leaf surfaces of bgl mutants, leading to more direct reflection and less diffusion of green light
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	leaf	The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces	The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	sheath	The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces	In agreement with the timing of SP initiation on the leaf epidermis, OsRopGEF10 is most strongly expressed in newly developing leaves before emergence from the leaf sheath
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	leaf	The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces	In agreement with the timing of SP initiation on the leaf epidermis, OsRopGEF10 is most strongly expressed in newly developing leaves before emergence from the leaf sheath
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	root	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	root	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Loss of OsRopGEF10 function reduced the expression of the response regulator gene OsRR6, a repressor of cytokinin signaling, and impaired crown root development
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	root	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Mutations in OsAHP1/2 led to increased crown root production and rescued the crown root defect of Osropgef10
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	development	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	development	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Loss of OsRopGEF10 function reduced the expression of the response regulator gene OsRR6, a repressor of cytokinin signaling, and impaired crown root development
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	crown root development	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	crown root development	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Loss of OsRopGEF10 function reduced the expression of the response regulator gene OsRR6, a repressor of cytokinin signaling, and impaired crown root development
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	root development	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	root development	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Loss of OsRopGEF10 function reduced the expression of the response regulator gene OsRR6, a repressor of cytokinin signaling, and impaired crown root development
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	cytokinin	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	cytokinin	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Mutations of OsRopGEF10 induced hypersensitivity to cytokinin, whereas overexpressing this gene reduced the cytokinin response
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	cytokinin	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Loss of OsRopGEF10 function reduced the expression of the response regulator gene OsRR6, a repressor of cytokinin signaling, and impaired crown root development
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	crown	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	crown	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Loss of OsRopGEF10 function reduced the expression of the response regulator gene OsRR6, a repressor of cytokinin signaling, and impaired crown root development
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	crown	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Mutations in OsAHP1/2 led to increased crown root production and rescued the crown root defect of Osropgef10
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	crown root	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	crown root	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Loss of OsRopGEF10 function reduced the expression of the response regulator gene OsRR6, a repressor of cytokinin signaling, and impaired crown root development
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	crown root	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Mutations in OsAHP1/2 led to increased crown root production and rescued the crown root defect of Osropgef10
OsRopGEF10|BGL	Os05g0454200	LOC_Os05g38000	cytokinin response	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	 Mutations of OsRopGEF10 induced hypersensitivity to cytokinin, whereas overexpressing this gene reduced the cytokinin response
OsRopGEF6	Os01g0675000	LOC_Os01g48410	pollen	Genome-wide analysis of RopGEF gene family to identify genes contributing to pollen tube growth in rice (Oryza sativa)	Instead, OsRopGEF2, OsRopGEF3, OsRopGEF6, and OsRopGEF8 were preferentially expressed in pollen, strongly suggesting their significant roles in pollen germination and tube growth.
OsROS1|TA2	Os01g0218032	LOC_Os01g11900	map-based cloning	Mutations in the DNA demethylase OsROS1 result in a thickened aleurone and improved nutritional value in rice grains.	Map-based cloning showed that TA2 encodes the DNA demethylase OsROS1
OsROS1|TA2	Os01g0218032	LOC_Os01g11900	pollen	CRISPR/Cas9-targeted mutagenesis of the OsROS1 gene induces pollen and embryo sac defects in rice.	CRISPR/Cas9-targeted mutagenesis of the OsROS1 gene induces pollen and embryo sac defects in rice.
OsRP1	Os11g0127900	LOC_Os11g03400	drought tolerance	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis
OsRP1	Os11g0127900	LOC_Os11g03400	drought	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis
OsRP1	Os11g0127900	LOC_Os11g03400	chloroplast	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Interestingly, two chloroplast-localized proteins (OsCP12 and OsRP1) interacted with OsCTR1 in the cytosol, and ubiquitination by OsCTR1 led to protein degradation via the Ub 26S proteasome
OsRP1	Os11g0127900	LOC_Os11g03400	chloroplast	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis
OsRPA1a	Os02g0776800	LOC_Os02g53680	meiosis	Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but is dispensable for DNA replication and homologous recombination in rice	Compared with wild type, the osrpa1a mutant showed no visible defects in mitosis and chromosome pairing and synapsis during meiosis
OsRPA1a	Os02g0776800	LOC_Os02g53680	sterile	Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but is dispensable for DNA replication and homologous recombination in rice	The osrpa1a mutants had a normal phenotype during vegetative growth but were sterile at the reproductive stage
OsRPA1a	Os02g0776800	LOC_Os02g53680	growth	Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but is dispensable for DNA replication and homologous recombination in rice	The osrpa1a mutants had a normal phenotype during vegetative growth but were sterile at the reproductive stage
OsRPA1a	Os02g0776800	LOC_Os02g53680	vegetative	Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but is dispensable for DNA replication and homologous recombination in rice	The osrpa1a mutants had a normal phenotype during vegetative growth but were sterile at the reproductive stage
OsRPA1a	Os02g0776800	LOC_Os02g53680	mitosis	Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but is dispensable for DNA replication and homologous recombination in rice	Compared with wild type, the osrpa1a mutant showed no visible defects in mitosis and chromosome pairing and synapsis during meiosis
OsRPA1a	Os02g0776800	LOC_Os02g53680	reproductive	Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but is dispensable for DNA replication and homologous recombination in rice	The osrpa1a mutants had a normal phenotype during vegetative growth but were sterile at the reproductive stage
OsRPA2|OsRPA32-1	Os02g0829100	LOC_Os02g58220	cell cycle	Plant-specific regulation of replication protein A2 (OsRPA2) from rice during the cell cycle and in response to ultraviolet light exposure	Plant-specific regulation of replication protein A2 (OsRPA2) from rice during the cell cycle and in response to ultraviolet light exposure
OsRPK1	Os07g0602700	LOC_Os07g41140	leaf	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	RESULTS: The OsRPK1 gene, which encodes a Ca(2+)-independent Ser/Thr kinase, was predominantly expressed in root tips, leaf blades, and undifferentiated suspension cells, and was markedly induced by treatment with auxin or ABA
OsRPK1	Os07g0602700	LOC_Os07g41140	auxin	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	RESULTS: The OsRPK1 gene, which encodes a Ca(2+)-independent Ser/Thr kinase, was predominantly expressed in root tips, leaf blades, and undifferentiated suspension cells, and was markedly induced by treatment with auxin or ABA
OsRPK1	Os07g0602700	LOC_Os07g41140	auxin	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	OsRPK1 over-expression also inhibited the expression of most auxin efflux carrier OsPIN genes, which was accompanied by changes in PAT and endogenous free IAA distribution in the leaves and roots
OsRPK1	Os07g0602700	LOC_Os07g41140	auxin	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	CONCLUSIONS: The data indicated that OsRPK1, a novel leucine-rich-repeat receptor-like kinase, affects the root system architecture by negatively regulating polar auxin transport in rice
OsRPK1	Os07g0602700	LOC_Os07g41140	auxin	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice
OsRPK1	Os07g0602700	LOC_Os07g41140	salt tolerance	Overexpression of the receptor-like protein kinase genes AtRPK1 and OsRPK1 reduces the salt tolerance of Arabidopsis thaliana	Overexpression of the receptor-like protein kinase genes AtRPK1 and OsRPK1 reduces the salt tolerance of Arabidopsis thaliana
OsRPK1	Os07g0602700	LOC_Os07g41140	root	New changes in the plasma-membrane-associated proteome of rice roots under salt stress	Using immuno-histochemical techniques, we determined that the expression of OsRPK1 was localized in the plasma membrane of cortex cells in roots
OsRPK1	Os07g0602700	LOC_Os07g41140	tiller number	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	Knockdown of OsRPK1 promoted the growth of transgenic rice plants, and increased plant height and tiller numbers
OsRPK1	Os07g0602700	LOC_Os07g41140	iaa	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	OsRPK1 over-expression also inhibited the expression of most auxin efflux carrier OsPIN genes, which was accompanied by changes in PAT and endogenous free IAA distribution in the leaves and roots
OsRPK1	Os07g0602700	LOC_Os07g41140	growth	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	Knockdown of OsRPK1 promoted the growth of transgenic rice plants, and increased plant height and tiller numbers
OsRPK1	Os07g0602700	LOC_Os07g41140	drought	New changes in the plasma-membrane-associated proteome of rice roots under salt stress	Immuno-blots indicated that OsRPK1 is also induced by cold, drought, and abscisic acid
OsRPK1	Os07g0602700	LOC_Os07g41140	root	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	We previously identified a novel LRR-RLK in rice roots, and named it OsRPK1
OsRPK1	Os07g0602700	LOC_Os07g41140	root	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	RESULTS: The OsRPK1 gene, which encodes a Ca(2+)-independent Ser/Thr kinase, was predominantly expressed in root tips, leaf blades, and undifferentiated suspension cells, and was markedly induced by treatment with auxin or ABA
OsRPK1	Os07g0602700	LOC_Os07g41140	root	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	OsRPK1 over-expression also inhibited the expression of most auxin efflux carrier OsPIN genes, which was accompanied by changes in PAT and endogenous free IAA distribution in the leaves and roots
OsRPK1	Os07g0602700	LOC_Os07g41140	root	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	CONCLUSIONS: The data indicated that OsRPK1, a novel leucine-rich-repeat receptor-like kinase, affects the root system architecture by negatively regulating polar auxin transport in rice
OsRPK1	Os07g0602700	LOC_Os07g41140	root	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice
OsRPK1	Os07g0602700	LOC_Os07g41140	height	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	Knockdown of OsRPK1 promoted the growth of transgenic rice plants, and increased plant height and tiller numbers
OsRPK1	Os07g0602700	LOC_Os07g41140	root development	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice
OsRPK1	Os07g0602700	LOC_Os07g41140	salt	New changes in the plasma-membrane-associated proteome of rice roots under salt stress	In addition, a new leucine-rich-repeat type receptor-like protein kinase, OsRPK1, was identified as a salt-responding protein
OsRPK1	Os07g0602700	LOC_Os07g41140	tiller	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	Knockdown of OsRPK1 promoted the growth of transgenic rice plants, and increased plant height and tiller numbers
OsRPK1	Os07g0602700	LOC_Os07g41140	architecture	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice	CONCLUSIONS: The data indicated that OsRPK1, a novel leucine-rich-repeat receptor-like kinase, affects the root system architecture by negatively regulating polar auxin transport in rice
OsRPK1	Os07g0602700	LOC_Os07g41140	salt	Overexpression of the receptor-like protein kinase genes AtRPK1 and OsRPK1 reduces the salt tolerance of Arabidopsis thaliana	Overexpression of the receptor-like protein kinase genes AtRPK1 and OsRPK1 reduces the salt tolerance of Arabidopsis thaliana
OsRPK1	Os07g0602700	LOC_Os07g41140	leaf	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	RESULTS: The OsRPK1 gene, which encodes a Ca(2+)-independent Ser/Thr kinase, was predominantly expressed in root tips, leaf blades, and undifferentiated suspension cells, and was markedly induced by treatment with auxin or ABA
OsRPK1	Os07g0602700	LOC_Os07g41140	root	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	RESULTS: The OsRPK1 gene, which encodes a Ca(2+)-independent Ser/Thr kinase, was predominantly expressed in root tips, leaf blades, and undifferentiated suspension cells, and was markedly induced by treatment with auxin or ABA
OsRPK1	Os07g0602700	LOC_Os07g41140	growth	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	Knockdown of OsRPK1 promoted the growth of transgenic rice plants, and increased plant height and tiller numbers
OsRPK1	Os07g0602700	LOC_Os07g41140	auxin	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	RESULTS: The OsRPK1 gene, which encodes a Ca(2+)-independent Ser/Thr kinase, was predominantly expressed in root tips, leaf blades, and undifferentiated suspension cells, and was markedly induced by treatment with auxin or ABA
OsRPK1	Os07g0602700	LOC_Os07g41140	auxin	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	OsRPK1 over-expression also inhibited the expression of most auxin efflux carrier OsPIN genes, which was accompanied by changes in PAT and endogenous free IAA distribution in the leaves and roots
OsRPK1	Os07g0602700	LOC_Os07g41140	tiller	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	Knockdown of OsRPK1 promoted the growth of transgenic rice plants, and increased plant height and tiller numbers
OsRPK1	Os07g0602700	LOC_Os07g41140	iaa	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	OsRPK1 over-expression also inhibited the expression of most auxin efflux carrier OsPIN genes, which was accompanied by changes in PAT and endogenous free IAA distribution in the leaves and roots
OsRPK1	Os07g0602700	LOC_Os07g41140	height	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	Knockdown of OsRPK1 promoted the growth of transgenic rice plants, and increased plant height and tiller numbers
OsRPK1	Os07g0602700	LOC_Os07g41140	plant height	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	Knockdown of OsRPK1 promoted the growth of transgenic rice plants, and increased plant height and tiller numbers
OsRPK1	Os07g0602700	LOC_Os07g41140	ABA	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	RESULTS: The OsRPK1 gene, which encodes a Ca(2+)-independent Ser/Thr kinase, was predominantly expressed in root tips, leaf blades, and undifferentiated suspension cells, and was markedly induced by treatment with auxin or ABA
OsRPK1	Os07g0602700	LOC_Os07g41140	Kinase	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	METHODS: In this study, we first detected OsRPK1 kinase activity in vitro, and assessed its expression profile
OsRPK1	Os07g0602700	LOC_Os07g41140	kinase	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	METHODS: In this study, we first detected OsRPK1 kinase activity in vitro, and assessed its expression profile
OsRPK1	Os07g0602700	LOC_Os07g41140	tiller number	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	Knockdown of OsRPK1 promoted the growth of transgenic rice plants, and increased plant height and tiller numbers
OsRPK1	Os07g0602700	LOC_Os07g41140	IAA	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	OsRPK1 over-expression also inhibited the expression of most auxin efflux carrier OsPIN genes, which was accompanied by changes in PAT and endogenous free IAA distribution in the leaves and roots
OsRpn1	Os05g0301500	LOC_Os05g23600	ribophorin	The Rice Malectin Regulates Plant Cell Death and Disease Resistance by Participating in Glycoprotein Quality Control	Here, we demonstrate the rice OsMLD1 is an ER- and Golgi-associated malectin protein and physically interacts with rice homolog of ribophorin I (OsRpn1), and its disruption leads to spontaneous lesion mimic lesions, enhanced disease resistance, and prolonged ER stress.
OsRpoTp	Os06g0652000	LOC_Os06g44230	chloroplast	Characterization of a rice nuclear-encoded plastid RNA polymerase gene OsRpoTp	Expression analyses of the chloroplast-deficient rice mutant, virescent-1, showed a discrepancy between OsRpoTp protein accumulation and the level of transcripts of NEP-transcribed genes
OsRpoTp	Os06g0652000	LOC_Os06g44230	chloroplast	The virescent-2 mutation inhibits translation of plastid transcripts for the plastid genetic system at an early stage of chloroplast differentiation	Accumulation of transcripts of nuclear-encoded photosynthetic genes, such as cab and rbcS, was strongly suppressed in the mutant at later stages of chloroplast differentiation, whereas transcripts of genes for the plastid transcription apparatus, such as OsRpoTp and OsSIG2A, accumulated to abnormally high levels at these stages
OsRpoTp	Os06g0652000	LOC_Os06g44230	leaf	Characterization of a rice nuclear-encoded plastid RNA polymerase gene OsRpoTp	We demonstrated by reverse transcription-PCR experiments and immunoblot analysis that OsRpoTp expression occurred at an early stage of leaf development, prior to the transcript accumulation of the genes that were transcribed by the nuclear-encoded plastid RNA polymerase (NEP)
OsRpoTp	Os06g0652000	LOC_Os06g44230	leaf development	Characterization of a rice nuclear-encoded plastid RNA polymerase gene OsRpoTp	We demonstrated by reverse transcription-PCR experiments and immunoblot analysis that OsRpoTp expression occurred at an early stage of leaf development, prior to the transcript accumulation of the genes that were transcribed by the nuclear-encoded plastid RNA polymerase (NEP)
OsRPT4	Os02g0199900	LOC_Os02g10640	cell cycle	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner.	Since yeast two-hybrid results indicated that OsRAA1 interacts with OsRPT4, which is a known cell cycle regulator, we investigated the cell cycle in transgenic roots to unveil the mechanism of OsRAA1 regulation in root growth.
OsRPT4	Os02g0199900	LOC_Os02g10640	root growth	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner.	Since yeast two-hybrid results indicated that OsRAA1 interacts with OsRPT4, which is a known cell cycle regulator, we investigated the cell cycle in transgenic roots to unveil the mechanism of OsRAA1 regulation in root growth.
OsRR1	Os04g0442300	LOC_Os04g36070	auxin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
OsRR1	Os04g0442300	LOC_Os04g36070	auxin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling
OsRR1	Os04g0442300	LOC_Os04g36070	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR1	Os04g0442300	LOC_Os04g36070	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Transgenic plants that over-expressed OsRR1 under the control of the CRL5 promoter in a crl5 mutant background produced a higher number of crown roots than the crl5 plant
OsRR1	Os04g0442300	LOC_Os04g36070	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
OsRR1	Os04g0442300	LOC_Os04g36070	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling
OsRR1	Os04g0442300	LOC_Os04g36070	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR1	Os04g0442300	LOC_Os04g36070	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Transgenic plants that over-expressed OsRR1 under the control of the CRL5 promoter in a crl5 mutant background produced a higher number of crown roots than the crl5 plant
OsRR1	Os04g0442300	LOC_Os04g36070	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
OsRR1	Os04g0442300	LOC_Os04g36070	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling
OsRR1	Os04g0442300	LOC_Os04g36070	resistant	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR1	Os04g0442300	LOC_Os04g36070	cytokinin	Identification and characterization of cytokinin-signalling gene families in rice	sativa RR) showed cytokinin-induced expression, and three (OsRR8, OsRR12 and OsRR13) showed expression in flower
OsRR1	Os04g0442300	LOC_Os04g36070	cytokinin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR1	Os04g0442300	LOC_Os04g36070	cytokinin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
OsRR1	Os04g0442300	LOC_Os04g36070	cytokinin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling
OsRR1	Os04g0442300	LOC_Os04g36070	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR1	Os04g0442300	LOC_Os04g36070	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Transgenic plants that over-expressed OsRR1 under the control of the CRL5 promoter in a crl5 mutant background produced a higher number of crown roots than the crl5 plant
OsRR1	Os04g0442300	LOC_Os04g36070	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	Taken together, these results indicate that auxin-induced CRL5 promotes crown root initiation through repression of cytokinin signaling by positively regulating type-A RR, OsRR1
OsRR1	Os04g0442300	LOC_Os04g36070	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling
OsRR1	Os04g0442300	LOC_Os04g36070	flower	Identification and characterization of cytokinin-signalling gene families in rice	sativa RR) showed cytokinin-induced expression, and three (OsRR8, OsRR12 and OsRR13) showed expression in flower
OsRR1	Os04g0442300	LOC_Os04g36070	transcription factor	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling
OsRR2	Os02g0557800	LOC_Os02g35180	cytokinin	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR2	Os02g0557800	LOC_Os02g35180	resistant	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR2	Os02g0557800	LOC_Os02g35180	root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR2	Os02g0557800	LOC_Os02g35180	crown root	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR2	Os02g0557800	LOC_Os02g35180	crown	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling	In addition, ProACT:CRL5/WT showed a cytokinin-resistant phenotype for crown root initiation, and also up-regulated the expression of two negative regulators of cytokinin signaling, OsRR1 and OsRR2, which were downregulated in crl5
OsRR2	Os02g0557800	LOC_Os02g35180	root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation.
OsRR2	Os02g0557800	LOC_Os02g35180	crown root initiation	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation.
OsRR2	Os02g0557800	LOC_Os02g35180	crown root elongation	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation.
OsRR2	Os02g0557800	LOC_Os02g35180	crown root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation.
OsRR2	Os02g0557800	LOC_Os02g35180	crown root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	The expression of ERF3 and WOX11 only partially overlapped, underlining a spatio-temporal control of RR2 expression and crown root development.
OsRR2	Os02g0557800	LOC_Os02g35180	crown root development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	The expression of ERF3 and WOX11 only partially overlapped, underlining a spatio-temporal control of RR2 expression and crown root development.
OsRR2	Os02g0557800	LOC_Os02g35180	root development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling	The expression of ERF3 and WOX11 only partially overlapped, underlining a spatio-temporal control of RR2 expression and crown root development.
OsRR21	Os03g0224200	LOC_Os03g12350	R protein	Histidine kinase MHZ1/OsHK1 interacts with ethylene receptors to regulate root growth in rice.	MHZ1/OsHK1 is autophosphorylated at a conserved histidine residue and can transfer the phosphoryl signal to the response regulator OsRR21 via the phosphotransfer proteins OsAHP1/2
OsRR6	Os04g0673300	LOC_Os04g57720	salinity	Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa)	Moreover, the expression of the OsRR6 gene was enhanced in rice seedlings exposed to salinity, dehydration and low temperature stress
OsRR6	Os04g0673300	LOC_Os04g57720	root	Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism	Transgenic lines overexpressing OsRR6 (OsRR6-ox) had dwarf phenotypes with poorly developed root systems and panicles
OsRR6	Os04g0673300	LOC_Os04g57720	seedling	Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa)	Moreover, the expression of the OsRR6 gene was enhanced in rice seedlings exposed to salinity, dehydration and low temperature stress
OsRR6	Os04g0673300	LOC_Os04g57720	dwarf	Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism	Transgenic lines overexpressing OsRR6 (OsRR6-ox) had dwarf phenotypes with poorly developed root systems and panicles
OsRR6	Os04g0673300	LOC_Os04g57720	cytokinin	Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa)	The induction of OsRR6 in response to different environmental stimuli indicates its role in cross-talk between abiotic stress and cytokinin signaling
OsRR6	Os04g0673300	LOC_Os04g57720	abiotic stress	Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa)	The induction of OsRR6 in response to different environmental stimuli indicates its role in cross-talk between abiotic stress and cytokinin signaling
OsRR6	Os04g0673300	LOC_Os04g57720	temperature	Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa)	Moreover, the expression of the OsRR6 gene was enhanced in rice seedlings exposed to salinity, dehydration and low temperature stress
OsRR6	Os04g0673300	LOC_Os04g57720	shoot	Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism	Overexpression of the CK-inducible type-A response regulator OsRR6 abolished shoot regeneration, suggesting that OsRR6 acts as a negative regulator of CK signaling
OsRR6	Os04g0673300	LOC_Os04g57720	panicle	Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism	Transgenic lines overexpressing OsRR6 (OsRR6-ox) had dwarf phenotypes with poorly developed root systems and panicles
OsRR6	Os04g0673300	LOC_Os04g57720	seedlings	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The hypocotyl growth in OsRR6OX seedlings was significantly inhibited under red, far-red and blue-light conditions and also a decline in transcript levels of OsRR6 was observed in rice under the above monochromatic as well as white light treatments
OsRR6	Os04g0673300	LOC_Os04g57720	seedlings	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	Comparative transcriptome analysis showed that the genes associated with phenylpropanoid and triterpenoid biosynthesis are enriched among differentially expressed genes in OsRR6OX seedlings of Arabidopsis, which is in conformity with reanalysis of the transcriptome data performed in rice transgenics for OsRR6
OsRR6	Os04g0673300	LOC_Os04g57720	root	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The Arabidopsis plants constitutively expressing OsRR6 (OsRR6OX) exhibited reduced cytokinin sensitivity, adventitious root formation and enhanced anthocyanin accumulation in seeds
OsRR6	Os04g0673300	LOC_Os04g57720	growth	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The hypocotyl growth in OsRR6OX seedlings was significantly inhibited under red, far-red and blue-light conditions and also a decline in transcript levels of OsRR6 was observed in rice under the above monochromatic as well as white light treatments
OsRR6	Os04g0673300	LOC_Os04g57720	salinity	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The expression of OsRR6 is induced by exogenous cytokinin and various abiotic stress treatments, including drought, cold and salinity stress
OsRR6	Os04g0673300	LOC_Os04g57720	abiotic stress	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The expression of OsRR6 is induced by exogenous cytokinin and various abiotic stress treatments, including drought, cold and salinity stress
OsRR6	Os04g0673300	LOC_Os04g57720	cytokinin	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The expression of OsRR6 is induced by exogenous cytokinin and various abiotic stress treatments, including drought, cold and salinity stress
OsRR6	Os04g0673300	LOC_Os04g57720	cytokinin	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The Arabidopsis plants constitutively expressing OsRR6 (OsRR6OX) exhibited reduced cytokinin sensitivity, adventitious root formation and enhanced anthocyanin accumulation in seeds
OsRR6	Os04g0673300	LOC_Os04g57720	stress	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The expression of OsRR6 is induced by exogenous cytokinin and various abiotic stress treatments, including drought, cold and salinity stress
OsRR6	Os04g0673300	LOC_Os04g57720	biotic stress	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The expression of OsRR6 is induced by exogenous cytokinin and various abiotic stress treatments, including drought, cold and salinity stress
OsRR6	Os04g0673300	LOC_Os04g57720	salinity stress	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The expression of OsRR6 is induced by exogenous cytokinin and various abiotic stress treatments, including drought, cold and salinity stress
OsRR6	Os04g0673300	LOC_Os04g57720	cold	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The expression of OsRR6 is induced by exogenous cytokinin and various abiotic stress treatments, including drought, cold and salinity stress
OsRR6	Os04g0673300	LOC_Os04g57720	adventitious root	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The Arabidopsis plants constitutively expressing OsRR6 (OsRR6OX) exhibited reduced cytokinin sensitivity, adventitious root formation and enhanced anthocyanin accumulation in seeds
OsRR6	Os04g0673300	LOC_Os04g57720	adventitious root formation	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis	The Arabidopsis plants constitutively expressing OsRR6 (OsRR6OX) exhibited reduced cytokinin sensitivity, adventitious root formation and enhanced anthocyanin accumulation in seeds
OsRR8	Os08g0376700	LOC_Os08g28900	flower	Identification and characterization of cytokinin-signalling gene families in rice	sativa RR) showed cytokinin-induced expression, and three (OsRR8, OsRR12 and OsRR13) showed expression in flower
OsRR8	Os08g0376700	LOC_Os08g28900	cytokinin	Identification and characterization of cytokinin-signalling gene families in rice	sativa RR) showed cytokinin-induced expression, and three (OsRR8, OsRR12 and OsRR13) showed expression in flower
OsRR9	Os11g0143300	LOC_Os11g04720	salinity	Response Regulator 9 and 10 Negatively Regulate Salinity Tolerance in Rice.	Here, we demonstrated the function of two highly identical rice type-A response regulators, OsRR9 and OsRR10, which are both induced by cytokinin and repressed by salinity stress in rice
OsRR9	Os11g0143300	LOC_Os11g04720	salinity	Response Regulator 9 and 10 Negatively Regulate Salinity Tolerance in Rice.	Together, these results suggest that OsRR9 and OsRR10 function as negative regulators in rice salinity tolerance
OsRR9	Os11g0143300	LOC_Os11g04720	tolerance	Response Regulator 9 and 10 Negatively Regulate Salinity Tolerance in Rice.	Together, these results suggest that OsRR9 and OsRR10 function as negative regulators in rice salinity tolerance
OsRR9	Os11g0143300	LOC_Os11g04720	cytokinin	Response Regulator 9 and 10 Negatively Regulate Salinity Tolerance in Rice.	Here, we demonstrated the function of two highly identical rice type-A response regulators, OsRR9 and OsRR10, which are both induced by cytokinin and repressed by salinity stress in rice
OsRR9	Os11g0143300	LOC_Os11g04720	stress	Response Regulator 9 and 10 Negatively Regulate Salinity Tolerance in Rice.	Here, we demonstrated the function of two highly identical rice type-A response regulators, OsRR9 and OsRR10, which are both induced by cytokinin and repressed by salinity stress in rice
OsRR9	Os11g0143300	LOC_Os11g04720	salinity stress	Response Regulator 9 and 10 Negatively Regulate Salinity Tolerance in Rice.	Here, we demonstrated the function of two highly identical rice type-A response regulators, OsRR9 and OsRR10, which are both induced by cytokinin and repressed by salinity stress in rice
OsRR9	Os11g0143300	LOC_Os11g04720	phytohormone	Response Regulator 9 and 10 Negatively Regulate Salinity Tolerance in Rice.	In addition, disruption of OsRR9 and OsRR10 also affects the expression of multiple genes related to photosynthesis, transcription activity, and phytohormone signaling
OsRRK1	Os06g0693200	LOC_Os06g47820	leaf	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.
OsRRK1	Os06g0693200	LOC_Os06g47820	development	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.	These results indicated that OsRRK1 may play multiple roles in the development and defense of rice, which may facilitate the breeding of novel rice varieties
OsRRK1	Os06g0693200	LOC_Os06g47820	defense	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.
OsRRK1	Os06g0693200	LOC_Os06g47820	defense	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.	These results indicated that OsRRK1 may play multiple roles in the development and defense of rice, which may facilitate the breeding of novel rice varieties
OsRRK1	Os06g0693200	LOC_Os06g47820	insect	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.
OsRRK1	Os06g0693200	LOC_Os06g47820	breeding	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.	These results indicated that OsRRK1 may play multiple roles in the development and defense of rice, which may facilitate the breeding of novel rice varieties
OsRRK1	Os06g0693200	LOC_Os06g47820	erect	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.	Overexpression of OsRRK1 (OE-OsRRK1) caused adaxial rolling and erect morphology of rice leaves
OsRRM	Os09g0298700	LOC_Os09g12730	growth	OsRRM, a Spen-like rice gene expressed specifically in the endosperm	Ectopic expression of OsRRM in transgenic plants led to abnormalities, such as short stature, retarded growth and low fructification rates
OsRRM	Os09g0298700	LOC_Os09g12730	endosperm	OsRRM, a Spen-like rice gene expressed specifically in the endosperm	The OsRRM promoter directed GUS expression specifically in rice endosperm, analogous to the GUS expression pattern observed in 107#
OsRRM	Os09g0298700	LOC_Os09g12730	endosperm	OsRRM, a Spen-like rice gene expressed specifically in the endosperm	Western blot analysis confirmed that the OsRRM protein was specifically expressed in rice endosperm
OsRRM	Os09g0298700	LOC_Os09g12730	endosperm	OsRRM, a Spen-like rice gene expressed specifically in the endosperm	Our data, in conjunction with the reported function of Spen genes, implicated OsRRM in the regulation of cell development in rice endosperm
OsRRM	Os09g0298700	LOC_Os09g12730	endosperm	OsRRM, a Spen-like rice gene expressed specifically in the endosperm	OsRRM, a Spen-like rice gene expressed specifically in the endosperm
OsRRM	Os09g0298700	LOC_Os09g12730	transcription factor	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The OsRRM expression pattern partly resembles that of several sugar transporter and transcription factor genes that specifically affect sugar transporter gene expression
OsRRM	Os09g0298700	LOC_Os09g12730	seed	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The messenger RNA levels of almost all of the sugar transporter genes are severely reduced in the osrrm mutant, and this alters sugar metabolism and sugar signaling, which further affects plant height, flowering time, seed size, and starch synthesis
OsRRM	Os09g0298700	LOC_Os09g12730	starch	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The messenger RNA levels of almost all of the sugar transporter genes are severely reduced in the osrrm mutant, and this alters sugar metabolism and sugar signaling, which further affects plant height, flowering time, seed size, and starch synthesis
OsRRM	Os09g0298700	LOC_Os09g12730	transporter	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The OsRRM expression pattern partly resembles that of several sugar transporter and transcription factor genes that specifically affect sugar transporter gene expression
OsRRM	Os09g0298700	LOC_Os09g12730	transporter	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The messenger RNA levels of almost all of the sugar transporter genes are severely reduced in the osrrm mutant, and this alters sugar metabolism and sugar signaling, which further affects plant height, flowering time, seed size, and starch synthesis
OsRRM	Os09g0298700	LOC_Os09g12730	transporter	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	We further showed that OsRRM binds directly to messenger RNAs encoded by sugar transporter genes and thus may stabilize their transcripts
OsRRM	Os09g0298700	LOC_Os09g12730	plant height	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The messenger RNA levels of almost all of the sugar transporter genes are severely reduced in the osrrm mutant, and this alters sugar metabolism and sugar signaling, which further affects plant height, flowering time, seed size, and starch synthesis
OsRRM	Os09g0298700	LOC_Os09g12730	seed size	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The messenger RNA levels of almost all of the sugar transporter genes are severely reduced in the osrrm mutant, and this alters sugar metabolism and sugar signaling, which further affects plant height, flowering time, seed size, and starch synthesis
OsRRM	Os09g0298700	LOC_Os09g12730	sugar	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The OsRRM expression pattern partly resembles that of several sugar transporter and transcription factor genes that specifically affect sugar transporter gene expression
OsRRM	Os09g0298700	LOC_Os09g12730	sugar	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The messenger RNA levels of almost all of the sugar transporter genes are severely reduced in the osrrm mutant, and this alters sugar metabolism and sugar signaling, which further affects plant height, flowering time, seed size, and starch synthesis
OsRRM	Os09g0298700	LOC_Os09g12730	sugar	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	We further showed that OsRRM binds directly to messenger RNAs encoded by sugar transporter genes and thus may stabilize their transcripts
OsRRM	Os09g0298700	LOC_Os09g12730	flowering time	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The messenger RNA levels of almost all of the sugar transporter genes are severely reduced in the osrrm mutant, and this alters sugar metabolism and sugar signaling, which further affects plant height, flowering time, seed size, and starch synthesis
OsRRM	Os09g0298700	LOC_Os09g12730	flowering	OsRRM, an RNA-Binding Protein, Modulates Sugar Transport in Rice ( Oryza sativa L.)	The messenger RNA levels of almost all of the sugar transporter genes are severely reduced in the osrrm mutant, and this alters sugar metabolism and sugar signaling, which further affects plant height, flowering time, seed size, and starch synthesis
OsRRMh	Os09g0516300	LOC_Os09g34070	flower	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	The OsRRMh dsRNAi lines exhibited late-flowering and a larger panicle phenotype
OsRRMh	Os09g0516300	LOC_Os09g34070	flower	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	Also, overexpression of OsRRMh in the Arabidopsis fpa mutant did not restore the normal flowering time, and it delayed flowering in Col plants
OsRRMh	Os09g0516300	LOC_Os09g34070	seed	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	The gene has been found to be constitutively expressed in the root, stem, leaf, spikelet, and immature seed, and alternative splicing patterns were confirmed in different tissues, which may indicate diverse functions for OsRRMh
OsRRMh	Os09g0516300	LOC_Os09g34070	vegetative	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	Therefore, we propose that OsRRMh may confer one of its functions in the vegetative-to-reproductive transition in rice (Oryza sativa L
OsRRMh	Os09g0516300	LOC_Os09g34070	vegetative	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice
OsRRMh	Os09g0516300	LOC_Os09g34070	reproductive	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	Therefore, we propose that OsRRMh may confer one of its functions in the vegetative-to-reproductive transition in rice (Oryza sativa L
OsRRMh	Os09g0516300	LOC_Os09g34070	reproductive	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice
OsRRMh	Os09g0516300	LOC_Os09g34070	panicle	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	The OsRRMh dsRNAi lines exhibited late-flowering and a larger panicle phenotype
OsRRMh	Os09g0516300	LOC_Os09g34070	panicle	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	When full-length OsRRMh and/or its SPOC domain were overexpressed, the fertility rate and number of spikelets per panicle were both markedly reduced
OsRRMh	Os09g0516300	LOC_Os09g34070	spikelets per panicle	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	When full-length OsRRMh and/or its SPOC domain were overexpressed, the fertility rate and number of spikelets per panicle were both markedly reduced
OsRRMh	Os09g0516300	LOC_Os09g34070	root	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	The gene has been found to be constitutively expressed in the root, stem, leaf, spikelet, and immature seed, and alternative splicing patterns were confirmed in different tissues, which may indicate diverse functions for OsRRMh
OsRRMh	Os09g0516300	LOC_Os09g34070	stem	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	The gene has been found to be constitutively expressed in the root, stem, leaf, spikelet, and immature seed, and alternative splicing patterns were confirmed in different tissues, which may indicate diverse functions for OsRRMh
OsRRMh	Os09g0516300	LOC_Os09g34070	leaf	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	The gene has been found to be constitutively expressed in the root, stem, leaf, spikelet, and immature seed, and alternative splicing patterns were confirmed in different tissues, which may indicate diverse functions for OsRRMh
OsRRMh	Os09g0516300	LOC_Os09g34070	flowering time	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	Also, overexpression of OsRRMh in the Arabidopsis fpa mutant did not restore the normal flowering time, and it delayed flowering in Col plants
OsRRMh	Os09g0516300	LOC_Os09g34070	fertility	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	When full-length OsRRMh and/or its SPOC domain were overexpressed, the fertility rate and number of spikelets per panicle were both markedly reduced
OsRRMh	Os09g0516300	LOC_Os09g34070	spikelet	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	The gene has been found to be constitutively expressed in the root, stem, leaf, spikelet, and immature seed, and alternative splicing patterns were confirmed in different tissues, which may indicate diverse functions for OsRRMh
OsRRMh	Os09g0516300	LOC_Os09g34070	spikelet	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice	When full-length OsRRMh and/or its SPOC domain were overexpressed, the fertility rate and number of spikelets per panicle were both markedly reduced
OsRS33	Os02g0122800	LOC_Os02g03040	abiotic stress	The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses	The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses
OsRS33	Os02g0122800	LOC_Os02g03040	abiotic stress response	The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses	The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses
OsRS33	Os02g0122800	LOC_Os02g03040	stress response	The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses	The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses
OsRS33	Os02g0122800	LOC_Os02g03040	pre-mRNA splicing	The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses	The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses
OsRSL3	Os06g0496400	LOC_Os06g30090	root	Response of Southeast Asian rice root architecture and anatomy phenotypes to drought stress.	 Four SNPs in OsRSL3 were found that caused amino acid changes and significantly associated with the root phenotype
OsRTH1	Os01g0711600	LOC_Os01g51430	root	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In rice, OsRTH1 overexpression substantially prevented ethylene-induced alterations in growth and development, including leaf senescence, seedling leaf elongation and development, coleoptile elongation or curvature, and adventitious root development
OsRTH1	Os01g0711600	LOC_Os01g51430	ethylene	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	Results from a cross-species complementation test in Arabidopsis showed that OsRTH1 overexpression complemented the rte1-2 loss-of-function mutation and conferred whole-plant ethylene insensitivity in an ETR1-dependent manner
OsRTH1	Os01g0711600	LOC_Os01g51430	ethylene	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In rice, OsRTH1 overexpression substantially prevented ethylene-induced alterations in growth and development, including leaf senescence, seedling leaf elongation and development, coleoptile elongation or curvature, and adventitious root development
OsRTH1	Os01g0711600	LOC_Os01g51430	ethylene	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	OsRTH1 may be an RTE1 orthologue of rice and modulate rice ethylene responses
OsRTH1	Os01g0711600	LOC_Os01g51430	ethylene	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development
OsRTH1	Os01g0711600	LOC_Os01g51430	seedling	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In rice, OsRTH1 overexpression substantially prevented ethylene-induced alterations in growth and development, including leaf senescence, seedling leaf elongation and development, coleoptile elongation or curvature, and adventitious root development
OsRTH1	Os01g0711600	LOC_Os01g51430	seedling	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development
OsRTH1	Os01g0711600	LOC_Os01g51430	senescence	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In rice, OsRTH1 overexpression substantially prevented ethylene-induced alterations in growth and development, including leaf senescence, seedling leaf elongation and development, coleoptile elongation or curvature, and adventitious root development
OsRTH1	Os01g0711600	LOC_Os01g51430	root development	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In rice, OsRTH1 overexpression substantially prevented ethylene-induced alterations in growth and development, including leaf senescence, seedling leaf elongation and development, coleoptile elongation or curvature, and adventitious root development
OsRTH1	Os01g0711600	LOC_Os01g51430	leaf	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In rice, OsRTH1 overexpression substantially prevented ethylene-induced alterations in growth and development, including leaf senescence, seedling leaf elongation and development, coleoptile elongation or curvature, and adventitious root development
OsRTH1	Os01g0711600	LOC_Os01g51430	growth	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In rice, OsRTH1 overexpression substantially prevented ethylene-induced alterations in growth and development, including leaf senescence, seedling leaf elongation and development, coleoptile elongation or curvature, and adventitious root development
OsRTH1	Os01g0711600	LOC_Os01g51430	growth	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development
OsRTH1	Os01g0711600	LOC_Os01g51430	adventitious root	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In rice, OsRTH1 overexpression substantially prevented ethylene-induced alterations in growth and development, including leaf senescence, seedling leaf elongation and development, coleoptile elongation or curvature, and adventitious root development
OsRTH2	Os05g0539800	LOC_Os05g46240	ethylene	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In contrast, OsRTH2 and OsRTH3 overexpression did not complement rte1-2 or confer ethylene insensitivity
OsRTH3	Os03G0799500	LOC_Os03g58520	ethylene	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development	In contrast, OsRTH2 and OsRTH3 overexpression did not complement rte1-2 or confer ethylene insensitivity
OsRZ1	Os03g0836200	LOC_Os03g61990	cold stress	Structural features important for the RNA chaperone activity of zinc finger-containing glycine-rich RNA-binding proteins from wheat (Triticum avestivum) and rice (Oryza sativa)	Although the amino acid sequence similarity among wheat TaRZ2, wheat TaRZ3, and rice OsRZ1 was high, only TaRZ2 had RNA chaperone activity as evidenced by complementation ability in cold-sensitive Escherichia coli mutant cell under cold stress and in vivo and in vitro nucleic acid-melting activity
OsRZ2	Os07g0187300	LOC_Os07g08960	temperature	Zinc finger-containing glycine-rich RNA-binding protein in Oryza sativa has an RNA chaperone activity under cold stress conditions	OsRZ2 complemented the cold sensitivity of BX04 Escherichia coli cells under low temperatures, and had DNA-melting activity and transcription anti-termination activity, thereby indicating that OsRZ2 possesses an RNA chaperone activity
OsRZ2	Os07g0187300	LOC_Os07g08960	cold stress	Zinc finger-containing glycine-rich RNA-binding protein in Oryza sativa has an RNA chaperone activity under cold stress conditions	Ectopic expression of OsRZ2, but not OsRZ3, in cold-sensitive Arabidopsis grp7 knockout plants rescued the grp7 plants from cold and freezing damage, and OsRZ2 complemented the defect in mRNA export from the nucleus to the cytoplasm in grp7 mutant during cold stress
OsRZ3	Os03g0681900	LOC_Os03g47800	cold stress	Zinc finger-containing glycine-rich RNA-binding protein in Oryza sativa has an RNA chaperone activity under cold stress conditions	Ectopic expression of OsRZ2, but not OsRZ3, in cold-sensitive Arabidopsis grp7 knockout plants rescued the grp7 plants from cold and freezing damage, and OsRZ2 complemented the defect in mRNA export from the nucleus to the cytoplasm in grp7 mutant during cold stress
OsRZF1	Os01g0555100	LOC_Os01g37460	R protein	Mutations in RZF1, a zinc-finger protein, reduce magnesium uptake in roots and translocation to shoots in rice.	 OsRZF1 is a nuclear protein and may have a fundamental role in maintaining Mg homeostasis in rice plants
OsRZF1	Os01g0555100	LOC_Os01g37460	homeostasis	Mutations in RZF1, a zinc-finger protein, reduce magnesium uptake in roots and translocation to shoots in rice.	 OsRZF1 is a nuclear protein and may have a fundamental role in maintaining Mg homeostasis in rice plants
OsRZF1	Os01g0555100	LOC_Os01g37460	magnesium uptake	Mutations in RZF1, a zinc-finger protein, reduce magnesium uptake in roots and translocation to shoots in rice	Mutations in RZF1, a zinc-finger protein, reduce magnesium uptake in roots and translocation to shoots in rice
OsRZF1	Os01g0555100	LOC_Os01g37460	magnesium	Mutations in RZF1, a zinc-finger protein, reduce magnesium uptake in roots and translocation to shoots in rice	Mutations in RZF1, a zinc-finger protein, reduce magnesium uptake in roots and translocation to shoots in rice
OsRZFP34	Os01g0719100	LOC_Os01g52110	leaf	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Analysis of water loss and leaf temperature under stress conditions revealed a higher evaporation rate and cooling effect in OsRZFP34-overexpressing Arabidopsis and rice than the wild type, atrzfp34 and osrzfp34
OsRZFP34	Os01g0719100	LOC_Os01g52110	leaf	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Thus, stomata opening, enhanced leaf cooling, and ABA insensitivity was conserved with OsRZFP34 expression
OsRZFP34	Os01g0719100	LOC_Os01g52110	temperature	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Analysis of water loss and leaf temperature under stress conditions revealed a higher evaporation rate and cooling effect in OsRZFP34-overexpressing Arabidopsis and rice than the wild type, atrzfp34 and osrzfp34
OsRZFP34	Os01g0719100	LOC_Os01g52110	ABA	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	As compared with the wild type, rice and Arabidopsis with OsRZFP34 overexpression showed increased relative stomata opening even with ABA treatment
OsRZFP34	Os01g0719100	LOC_Os01g52110	ABA	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Thus, stomata opening, enhanced leaf cooling, and ABA insensitivity was conserved with OsRZFP34 expression
OsRZFP34	Os01g0719100	LOC_Os01g52110	stress	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Analysis of water loss and leaf temperature under stress conditions revealed a higher evaporation rate and cooling effect in OsRZFP34-overexpressing Arabidopsis and rice than the wild type, atrzfp34 and osrzfp34
OsRZFP34	Os01g0719100	LOC_Os01g52110	stomatal	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Transcription profiling of transgenic rice overexpressing OsRZFP34 revealed many genes involved in OsRZFP34-mediated stomatal movement
OsRZFP34	Os01g0719100	LOC_Os01g52110	stomata	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	As compared with the wild type, rice and Arabidopsis with OsRZFP34 overexpression showed increased relative stomata opening even with ABA treatment
OsRZFP34	Os01g0719100	LOC_Os01g52110	stomata	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Furthermore, loss-of-function mutation of OsRZFP34 and AtRZFP34 (At5g22920), an OsRZFP34 homolog in Arabidopsis, decreased relative stomata aperture under nonstress control conditions
OsRZFP34	Os01g0719100	LOC_Os01g52110	stomata	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Thus, stomata opening, enhanced leaf cooling, and ABA insensitivity was conserved with OsRZFP34 expression
OsRZFP34	Os01g0719100	LOC_Os01g52110	stomata	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	We suggest that OsRZFP34 may modulate these genes to control stomata opening
OsRZFP34	Os01g0719100	LOC_Os01g52110	water loss	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Analysis of water loss and leaf temperature under stress conditions revealed a higher evaporation rate and cooling effect in OsRZFP34-overexpressing Arabidopsis and rice than the wild type, atrzfp34 and osrzfp34
OsRZFP34	Os01g0719100	LOC_Os01g52110	ABA	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	As compared with the wild type, rice and Arabidopsis with OsRZFP34 overexpression showed increased relative stomata opening even with ABA treatment
OsRZFP34	Os01g0719100	LOC_Os01g52110	ABA	Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.	Thus, stomata opening, enhanced leaf cooling, and ABA insensitivity was conserved with OsRZFP34 expression
OsS1Fa1	Os04g0408900	LOC_Os04g33420	seedlings	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 OsS1Fa1 was highly expressed in leaf, culm, and root tissues of rice seedlings during vegetative growth and was significantly induced under drought stress
OsS1Fa1	Os04g0408900	LOC_Os04g33420	root	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 OsS1Fa1 was highly expressed in leaf, culm, and root tissues of rice seedlings during vegetative growth and was significantly induced under drought stress
OsS1Fa1	Os04g0408900	LOC_Os04g33420	growth	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 OsS1Fa1 was highly expressed in leaf, culm, and root tissues of rice seedlings during vegetative growth and was significantly induced under drought stress
OsS1Fa1	Os04g0408900	LOC_Os04g33420	drought	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.
OsS1Fa1	Os04g0408900	LOC_Os04g33420	drought	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 OsS1Fa1 was highly expressed in leaf, culm, and root tissues of rice seedlings during vegetative growth and was significantly induced under drought stress
OsS1Fa1	Os04g0408900	LOC_Os04g33420	drought	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 OsS1Fa1 overexpression in Arabidopsis induced the expression of selected drought-responsive genes and enhanced the survival rate of transgenic lines under drought
OsS1Fa1	Os04g0408900	LOC_Os04g33420	drought	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 Together, our data indicate that the small protein OsS1Fa1 is induced by drought and is post-translationally regulated, and the ectopic expression of OsS1Fa1 protects plants from drought stress
OsS1Fa1	Os04g0408900	LOC_Os04g33420	tolerance	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.
OsS1Fa1	Os04g0408900	LOC_Os04g33420	vegetative	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 OsS1Fa1 was highly expressed in leaf, culm, and root tissues of rice seedlings during vegetative growth and was significantly induced under drought stress
OsS1Fa1	Os04g0408900	LOC_Os04g33420	drought tolerance	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.
OsS1Fa1	Os04g0408900	LOC_Os04g33420	stress	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 OsS1Fa1 was highly expressed in leaf, culm, and root tissues of rice seedlings during vegetative growth and was significantly induced under drought stress
OsS1Fa1	Os04g0408900	LOC_Os04g33420	stress	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 Together, our data indicate that the small protein OsS1Fa1 is induced by drought and is post-translationally regulated, and the ectopic expression of OsS1Fa1 protects plants from drought stress
OsS1Fa1	Os04g0408900	LOC_Os04g33420	drought stress	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 OsS1Fa1 was highly expressed in leaf, culm, and root tissues of rice seedlings during vegetative growth and was significantly induced under drought stress
OsS1Fa1	Os04g0408900	LOC_Os04g33420	drought stress	Overexpression of Rice OsS1Fa1 Gene Confers Drought Tolerance in Arabidopsis.	 Together, our data indicate that the small protein OsS1Fa1 is induced by drought and is post-translationally regulated, and the ectopic expression of OsS1Fa1 protects plants from drought stress
OsS40-13	Os04g0520700	LOC_Os04g43990	grain	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Moreover, increased grain size and grain weight occurred in the oss40-1, oss40-12, and oss40-14 lines, while declined grain weight appeared in the oss40-7 and oss40-13 mutants
OsS40-13	Os04g0520700	LOC_Os04g43990	grain size	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Moreover, increased grain size and grain weight occurred in the oss40-1, oss40-12, and oss40-14 lines, while declined grain weight appeared in the oss40-7 and oss40-13 mutants
OsS40-13	Os04g0520700	LOC_Os04g43990	grain weight	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Moreover, increased grain size and grain weight occurred in the oss40-1, oss40-12, and oss40-14 lines, while declined grain weight appeared in the oss40-7 and oss40-13 mutants
OsS40-14	Os05g0531000	LOC_Os05g45440	senescence	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	These results suggest that OsS40-1, OsS40-7, OsS40-12, OsS40-13, and OsS40-14 are senescence-associated genes, involved in the senescence and carbon allocation network by modulating other OsS40 members, SWEET member genes, and senescence-related gene expression
OsS40-14	Os05g0531000	LOC_Os05g45440	grain	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Moreover, increased grain size and grain weight occurred in the oss40-1, oss40-12, and oss40-14 lines, while declined grain weight appeared in the oss40-7 and oss40-13 mutants
OsS40-14	Os05g0531000	LOC_Os05g45440	grain size	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Moreover, increased grain size and grain weight occurred in the oss40-1, oss40-12, and oss40-14 lines, while declined grain weight appeared in the oss40-7 and oss40-13 mutants
OsS40-14	Os05g0531000	LOC_Os05g45440	grain weight	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Moreover, increased grain size and grain weight occurred in the oss40-1, oss40-12, and oss40-14 lines, while declined grain weight appeared in the oss40-7 and oss40-13 mutants
OsS40-7	Os01g0727500	LOC_Os01g52730	grain	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Moreover, increased grain size and grain weight occurred in the oss40-1, oss40-12, and oss40-14 lines, while declined grain weight appeared in the oss40-7 and oss40-13 mutants
OsS40-7	Os01g0727500	LOC_Os01g52730	grain size	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Moreover, increased grain size and grain weight occurred in the oss40-1, oss40-12, and oss40-14 lines, while declined grain weight appeared in the oss40-7 and oss40-13 mutants
OsS40-7	Os01g0727500	LOC_Os01g52730	grain weight	Five OsS40 Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Moreover, increased grain size and grain weight occurred in the oss40-1, oss40-12, and oss40-14 lines, while declined grain weight appeared in the oss40-7 and oss40-13 mutants
OsSAC1	Os07g0116300	LOC_Os07g02520	leaf	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	OsSAC1 was found poorly and specifically expressed at the bottoms of young leaves and in the developing leaf sheathes
OsSAC1	Os07g0116300	LOC_Os07g02520	leaf	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	Whereas, lower sucrose and glucose concentrations were observed in the ossac1 young leaves and developing leaf sheathes than those of the WT
OsSAC1	Os07g0116300	LOC_Os07g02520	leaf	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	More rice plasmodesmata negative regulator OsGSD1 was detected in ossac1 young leaves and developing leaf sheathes than in those of the WT
OsSAC1	Os07g0116300	LOC_Os07g02520	leaf	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	These results suggest that ER targeted OsSAC1 may indirectly regulate sugar partitioning in carbon-demanding young leaves and developing leaf sheathes
OsSAC1	Os07g0116300	LOC_Os07g02520	starch	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	I2/KI starch staining, ultrastructure observations, and starch content measurements indicated that more and larger starch granules accumulated in ossac1 source leaves than in wild-type (WT) source leaves
OsSAC1	Os07g0116300	LOC_Os07g02520	starch	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	Extremely more OsAGPL1 and OsAGPS1 (responsible for starch synthesis) expression and significantly less OscFBP1, OscFBP2, OsSPS1, and OsSPS11 (responsible for sucrose synthesis) and OsSWEET11, OsSWEET14, and OsSUT1 (responsible for sucrose loading) expression occurred in ossac1 source leaves than in WT source leaves
OsSAC1	Os07g0116300	LOC_Os07g02520	sugar	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.
OsSAC1	Os07g0116300	LOC_Os07g02520	sugar	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	OsSAC1 has been found to affect sugar partitioning in rice (Oryza sativa)
OsSAC1	Os07g0116300	LOC_Os07g02520	sugar	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	These results suggest that ER targeted OsSAC1 may indirectly regulate sugar partitioning in carbon-demanding young leaves and developing leaf sheathes
OsSAC1	Os07g0116300	LOC_Os07g02520	sucrose	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	Additionally, higher sucrose and glucose concentrations accumulated in the ossac1 source leaves than in WT source leaves
OsSAC1	Os07g0116300	LOC_Os07g02520	sucrose	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	Whereas, lower sucrose and glucose concentrations were observed in the ossac1 young leaves and developing leaf sheathes than those of the WT
OsSAC1	Os07g0116300	LOC_Os07g02520	sucrose	Mutation of the OsSAC1 gene, which encodes an endoplasmic reticulum protein with an unknown function, causes sugar accumulation in rice leaves.	Extremely more OsAGPL1 and OsAGPS1 (responsible for starch synthesis) expression and significantly less OscFBP1, OscFBP2, OsSPS1, and OsSPS11 (responsible for sucrose synthesis) and OsSWEET11, OsSWEET14, and OsSUT1 (responsible for sucrose loading) expression occurred in ossac1 source leaves than in WT source leaves
OsSADR1	Os11g0175500	LOC_Os11g07450	root	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	With ABA, OsSADR1 overexpression in plants produced highly tolerant phenotypes, with morphological changes in root length and stomatal closure
OsSADR1	Os11g0175500	LOC_Os11g07450	growth	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	Heterogeneous overexpression of OsSADR1 in Arabidopsis exhibited sensitive phenotypes for salt- and mannitol-responsive seed germination and seedling growth
OsSADR1	Os11g0175500	LOC_Os11g07450	seedling	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	Heterogeneous overexpression of OsSADR1 in Arabidopsis exhibited sensitive phenotypes for salt- and mannitol-responsive seed germination and seedling growth
OsSADR1	Os11g0175500	LOC_Os11g07450	seed	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	Heterogeneous overexpression of OsSADR1 in Arabidopsis exhibited sensitive phenotypes for salt- and mannitol-responsive seed germination and seedling growth
OsSADR1	Os11g0175500	LOC_Os11g07450	seed germination	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	Heterogeneous overexpression of OsSADR1 in Arabidopsis exhibited sensitive phenotypes for salt- and mannitol-responsive seed germination and seedling growth
OsSADR1	Os11g0175500	LOC_Os11g07450	abiotic stress	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	Taken together, OsSADR1 may act as a regulator in abiotic stress responses by modulating target protein levels
OsSADR1	Os11g0175500	LOC_Os11g07450	stress	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	Taken together, OsSADR1 may act as a regulator in abiotic stress responses by modulating target protein levels
OsSADR1	Os11g0175500	LOC_Os11g07450	biotic stress	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	Taken together, OsSADR1 may act as a regulator in abiotic stress responses by modulating target protein levels
OsSADR1	Os11g0175500	LOC_Os11g07450	stomatal	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	With ABA, OsSADR1 overexpression in plants produced highly tolerant phenotypes, with morphological changes in root length and stomatal closure
OsSADR1	Os11g0175500	LOC_Os11g07450	nucleus	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	However, transiently expressed OsSADR1 was primarily expressed in the nucleus (70%) in 200<U+2009>mM salt-treated rice protoplasts
OsSADR1	Os11g0175500	LOC_Os11g07450	nucleus	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	The two nucleus-localised proteins (OsSNAC2 and OsGRAS44) interacted with OsSADR1 in the cytosol and nucleus
OsSADR1	Os11g0175500	LOC_Os11g07450	stress response	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	Taken together, OsSADR1 may act as a regulator in abiotic stress responses by modulating target protein levels
OsSADR1	Os11g0175500	LOC_Os11g07450	root length	A negative regulator in response to salinity in rice: Oryza sativa Salt-, ABA- and Drought-induced RING finger protein 1 (OsSADR1).	With ABA, OsSADR1 overexpression in plants produced highly tolerant phenotypes, with morphological changes in root length and stomatal closure
OsSAE1	Os06g0639200	LOC_Os06g43220	seedling	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 ossae1 knockout lines exhibited delayed seed germination, enhanced sensitivity to abscisic acid (ABA) during germination and in early seedling growth, and reduced seedling salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	seed	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 ossae1 knockout lines exhibited delayed seed germination, enhanced sensitivity to abscisic acid (ABA) during germination and in early seedling growth, and reduced seedling salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	seed	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 OsSAE1 overexpression lines exhibited the converse phenotype, with increased seed germination and salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	seed	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 In vivo and in vitro assays indicated that OsSAE1 binds directly to the promoter of OsABI5, a major downstream component of the ABA signaling pathway and acts as a major regulator of seed germination and stress response
OsSAE1	Os06g0639200	LOC_Os06g43220	seed	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 This study provides important insights into OsSAE1 regulation of seed vigor and salt tolerance and facilitates the practical use of OsSAE1 in breeding salt-tolerant varieties suitable for direct seeding cultivation
OsSAE1	Os06g0639200	LOC_Os06g43220	salt	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 ossae1 knockout lines exhibited delayed seed germination, enhanced sensitivity to abscisic acid (ABA) during germination and in early seedling growth, and reduced seedling salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	salt	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 OsSAE1 overexpression lines exhibited the converse phenotype, with increased seed germination and salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	salt	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 This study provides important insights into OsSAE1 regulation of seed vigor and salt tolerance and facilitates the practical use of OsSAE1 in breeding salt-tolerant varieties suitable for direct seeding cultivation
OsSAE1	Os06g0639200	LOC_Os06g43220	seed germination	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 ossae1 knockout lines exhibited delayed seed germination, enhanced sensitivity to abscisic acid (ABA) during germination and in early seedling growth, and reduced seedling salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	seed germination	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 OsSAE1 overexpression lines exhibited the converse phenotype, with increased seed germination and salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	seed germination	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 In vivo and in vitro assays indicated that OsSAE1 binds directly to the promoter of OsABI5, a major downstream component of the ABA signaling pathway and acts as a major regulator of seed germination and stress response
OsSAE1	Os06g0639200	LOC_Os06g43220	tolerance	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 ossae1 knockout lines exhibited delayed seed germination, enhanced sensitivity to abscisic acid (ABA) during germination and in early seedling growth, and reduced seedling salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	tolerance	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 OsSAE1 overexpression lines exhibited the converse phenotype, with increased seed germination and salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	tolerance	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 This study provides important insights into OsSAE1 regulation of seed vigor and salt tolerance and facilitates the practical use of OsSAE1 in breeding salt-tolerant varieties suitable for direct seeding cultivation
OsSAE1	Os06g0639200	LOC_Os06g43220	ABA	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 In vivo and in vitro assays indicated that OsSAE1 binds directly to the promoter of OsABI5, a major downstream component of the ABA signaling pathway and acts as a major regulator of seed germination and stress response
OsSAE1	Os06g0639200	LOC_Os06g43220	ABA	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 Genetic analyses revealed that OsABI5-mediated ABA signaling functions downstream of OsSAE1
OsSAE1	Os06g0639200	LOC_Os06g43220	salt tolerance	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 ossae1 knockout lines exhibited delayed seed germination, enhanced sensitivity to abscisic acid (ABA) during germination and in early seedling growth, and reduced seedling salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	salt tolerance	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 OsSAE1 overexpression lines exhibited the converse phenotype, with increased seed germination and salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	salt tolerance	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 This study provides important insights into OsSAE1 regulation of seed vigor and salt tolerance and facilitates the practical use of OsSAE1 in breeding salt-tolerant varieties suitable for direct seeding cultivation
OsSAE1	Os06g0639200	LOC_Os06g43220	stress	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 In vivo and in vitro assays indicated that OsSAE1 binds directly to the promoter of OsABI5, a major downstream component of the ABA signaling pathway and acts as a major regulator of seed germination and stress response
OsSAE1	Os06g0639200	LOC_Os06g43220	breeding	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 This study provides important insights into OsSAE1 regulation of seed vigor and salt tolerance and facilitates the practical use of OsSAE1 in breeding salt-tolerant varieties suitable for direct seeding cultivation
OsSAE1	Os06g0639200	LOC_Os06g43220	abscisic acid	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 ossae1 knockout lines exhibited delayed seed germination, enhanced sensitivity to abscisic acid (ABA) during germination and in early seedling growth, and reduced seedling salt tolerance
OsSAE1	Os06g0639200	LOC_Os06g43220	 ABA 	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 In vivo and in vitro assays indicated that OsSAE1 binds directly to the promoter of OsABI5, a major downstream component of the ABA signaling pathway and acts as a major regulator of seed germination and stress response
OsSAE1	Os06g0639200	LOC_Os06g43220	 ABA 	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 Genetic analyses revealed that OsABI5-mediated ABA signaling functions downstream of OsSAE1
OsSAE1	Os06g0639200	LOC_Os06g43220	stress response	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 In vivo and in vitro assays indicated that OsSAE1 binds directly to the promoter of OsABI5, a major downstream component of the ABA signaling pathway and acts as a major regulator of seed germination and stress response
OsSAE1	Os06g0639200	LOC_Os06g43220	seedling growth	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	 ossae1 knockout lines exhibited delayed seed germination, enhanced sensitivity to abscisic acid (ABA) during germination and in early seedling growth, and reduced seedling salt tolerance
OsSAE1a	Os11g0497000	LOC_Os11g30410	root	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	The qRT-PCR assay revealed a constitutive and variable spatiotemporal expression pattern of OsSAE1a in the vegetative and reproductive tissues and was comparable in the root and shoot grown under different Pi regimes
OsSAE1a	Os11g0497000	LOC_Os11g30410	growth	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice
OsSAE1a	Os11g0497000	LOC_Os11g30410	growth	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	The effects of the mutation in OsSAE1a were also evident in the vegetative and reproductive traits of rice during growth in a hydroponic system and pot soil, respectively
OsSAE1a	Os11g0497000	LOC_Os11g30410	growth	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Overall, these results suggest a broad-spectrum role of OsSAE1a in the maintenance of Pi homeostasis and regulating growth and development
OsSAE1a	Os11g0497000	LOC_Os11g30410	shoot	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	The qRT-PCR assay revealed a constitutive and variable spatiotemporal expression pattern of OsSAE1a in the vegetative and reproductive tissues and was comparable in the root and shoot grown under different Pi regimes
OsSAE1a	Os11g0497000	LOC_Os11g30410	development	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice
OsSAE1a	Os11g0497000	LOC_Os11g30410	development	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Overall, these results suggest a broad-spectrum role of OsSAE1a in the maintenance of Pi homeostasis and regulating growth and development
OsSAE1a	Os11g0497000	LOC_Os11g30410	vegetative	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	The qRT-PCR assay revealed a constitutive and variable spatiotemporal expression pattern of OsSAE1a in the vegetative and reproductive tissues and was comparable in the root and shoot grown under different Pi regimes
OsSAE1a	Os11g0497000	LOC_Os11g30410	vegetative	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	The effects of the mutation in OsSAE1a were also evident in the vegetative and reproductive traits of rice during growth in a hydroponic system and pot soil, respectively
OsSAE1a	Os11g0497000	LOC_Os11g30410	reproductive	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	The qRT-PCR assay revealed a constitutive and variable spatiotemporal expression pattern of OsSAE1a in the vegetative and reproductive tissues and was comparable in the root and shoot grown under different Pi regimes
OsSAE1a	Os11g0497000	LOC_Os11g30410	reproductive	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	The effects of the mutation in OsSAE1a were also evident in the vegetative and reproductive traits of rice during growth in a hydroponic system and pot soil, respectively
OsSAE1a	Os11g0497000	LOC_Os11g30410	homeostasis	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice
OsSAE1a	Os11g0497000	LOC_Os11g30410	homeostasis	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	RNAi-mediated suppression of OsSAE1a exerted variable effects on the concentrations of Pi and total P in different tissues, uptake and distribution of 32Pi, and relative expression levels of several genes that play pivotal roles in the maintenance of Pi homeostasis
OsSAE1a	Os11g0497000	LOC_Os11g30410	homeostasis	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Overall, these results suggest a broad-spectrum role of OsSAE1a in the maintenance of Pi homeostasis and regulating growth and development
OsSAE1a	Os11g0497000	LOC_Os11g30410	phosphate	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice
OsSAE1a	Os11g0497000	LOC_Os11g30410	Pi	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	The qRT-PCR assay revealed a constitutive and variable spatiotemporal expression pattern of OsSAE1a in the vegetative and reproductive tissues and was comparable in the root and shoot grown under different Pi regimes
OsSAE1a	Os11g0497000	LOC_Os11g30410	Pi	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	RNAi-mediated suppression of OsSAE1a exerted variable effects on the concentrations of Pi and total P in different tissues, uptake and distribution of 32Pi, and relative expression levels of several genes that play pivotal roles in the maintenance of Pi homeostasis
OsSAE1a	Os11g0497000	LOC_Os11g30410	Pi	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Overall, these results suggest a broad-spectrum role of OsSAE1a in the maintenance of Pi homeostasis and regulating growth and development
OsSAE1a	Os11g0497000	LOC_Os11g30410	pi	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	The qRT-PCR assay revealed a constitutive and variable spatiotemporal expression pattern of OsSAE1a in the vegetative and reproductive tissues and was comparable in the root and shoot grown under different Pi regimes
OsSAE1a	Os11g0497000	LOC_Os11g30410	pi	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	RNAi-mediated suppression of OsSAE1a exerted variable effects on the concentrations of Pi and total P in different tissues, uptake and distribution of 32Pi, and relative expression levels of several genes that play pivotal roles in the maintenance of Pi homeostasis
OsSAE1a	Os11g0497000	LOC_Os11g30410	pi	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Overall, these results suggest a broad-spectrum role of OsSAE1a in the maintenance of Pi homeostasis and regulating growth and development
OsSAE1a	Os11g0497000	LOC_Os11g30410	Pi homeostasis	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	RNAi-mediated suppression of OsSAE1a exerted variable effects on the concentrations of Pi and total P in different tissues, uptake and distribution of 32Pi, and relative expression levels of several genes that play pivotal roles in the maintenance of Pi homeostasis
OsSAE1a	Os11g0497000	LOC_Os11g30410	Pi homeostasis	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Overall, these results suggest a broad-spectrum role of OsSAE1a in the maintenance of Pi homeostasis and regulating growth and development
OsSAE1a	Os11g0497000	LOC_Os11g30410	phosphate homeostasis	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice
OsSAG12-2	Os08g0556900	LOC_Os08g44270	cell death	The rice OsSAG12-2 gene codes for a functional protease that negatively regulates stress-induced cell death.	The rice OsSAG12-2 gene codes for a functional protease that negatively regulates stress-induced cell death.
OsSAG12-2	Os08g0556900	LOC_Os08g44270	cell death	The rice OsSAG12-2 gene codes for a functional protease that negatively regulates stress-induced cell death.	Down-regulation of OsSAG12-2 in the transgenic artificial miRNA lines results in enhanced salt- and UV-induced cell death, even though it does not affect cell viability in the stress-free condition
OsSAG12-2	Os08g0556900	LOC_Os08g44270	cell death	The rice OsSAG12-2 gene codes for a functional protease that negatively regulates stress-induced cell death.	Our results show that OsSAG12-2 codes for a functional protease that negatively regulates stress-induced cell death in rice
OsSAG12-2	Os08g0556900	LOC_Os08g44270	senescence	The rice OsSAG12-2 gene codes for a functional protease that negatively regulates stress-induced cell death.	Dark-induced senescence activates OsSAG12-2 expression
OsSAH3|OsS5H1	Os04g0581100	LOC_Os04g49210	resistance	Salicylic Acid Is Required for Broad-Spectrum Disease Resistance in Rice.	 Knockout OsSAH2 and OsSAH3 (sahKO) genes conferred enhanced resistance to both hemibiotrophic and necrotrophic pathogens, whereas overexpression of each OsSAH gene increased susceptibility to the pathogens
OsSAH3|OsS5H1	Os04g0581100	LOC_Os04g49210	magnaporthe oryzae	Salicylic Acid Is Required for Broad-Spectrum Disease Resistance in Rice.	 Analysis of the OsSAH3 promoter indicated that its induction was mainly restricted around Magnaporthe oryzae infection sites
OsSAH3|OsS5H1	Os04g0581100	LOC_Os04g49210	sa	Salicylic Acid Is Required for Broad-Spectrum Disease Resistance in Rice.	 Recombinant OsSAH proteins catalyzed SA in vitro, while OsSAH3 protein showed only SA 5-hydroxylase (SA5H) activity, which was remarkably higher than that of other OsSAHs that presented both SA3H and SA5H activities
OsSAH3|OsS5H1	Os04g0581100	LOC_Os04g49210	SA	Salicylic Acid Is Required for Broad-Spectrum Disease Resistance in Rice.	 Recombinant OsSAH proteins catalyzed SA in vitro, while OsSAH3 protein showed only SA 5-hydroxylase (SA5H) activity, which was remarkably higher than that of other OsSAHs that presented both SA3H and SA5H activities
OsSAH3|OsS5H1	Os04g0581100	LOC_Os04g49210	 sa 	Salicylic Acid Is Required for Broad-Spectrum Disease Resistance in Rice.	 Recombinant OsSAH proteins catalyzed SA in vitro, while OsSAH3 protein showed only SA 5-hydroxylase (SA5H) activity, which was remarkably higher than that of other OsSAHs that presented both SA3H and SA5H activities
OsSAH3|OsS5H1	Os04g0581100	LOC_Os04g49210	sa	Disruption of the primary salicylic acid hydroxylases in rice enhances broad-spectrum resistance against pathogens.	 SA levels were significantly increased in the oss5h mutants, while they were dramatically decreased in the OsS5H1 and OsS5H2 overexpression lines
OsSAH3|OsS5H1	Os04g0581100	LOC_Os04g49210	SA	Disruption of the primary salicylic acid hydroxylases in rice enhances broad-spectrum resistance against pathogens.	 SA levels were significantly increased in the oss5h mutants, while they were dramatically decreased in the OsS5H1 and OsS5H2 overexpression lines
OsSAH3|OsS5H1	Os04g0581100	LOC_Os04g49210	 sa 	Disruption of the primary salicylic acid hydroxylases in rice enhances broad-spectrum resistance against pathogens.	 SA levels were significantly increased in the oss5h mutants, while they were dramatically decreased in the OsS5H1 and OsS5H2 overexpression lines
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	brassinosteroid	Exogenous application of brassinosteroid offers tolerance to salinity by altering stress responses in rice variety Pusa Basmati-1	Expression of various brassinosteroids (OsBRI1, OsDWF4) and salt (SalT) responsive genes, revealed the down regulation of OsDWF4 with application of EBL and upregulation of SalT in presence of salt stress thereby confirming the efficacy of the treatments
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	sheath	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought	salT mRNA accumulates very rapidly in sheaths and roots from mature plants and seedlings upon treatment with Murashige and Skoog salts (1%), air drying, abscisic acid (20 microM), polyethylene glycol (5%), sodium chloride (1%), and potassium chloride (1%)
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	root	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought	salT mRNA accumulates very rapidly in sheaths and roots from mature plants and seedlings upon treatment with Murashige and Skoog salts (1%), air drying, abscisic acid (20 microM), polyethylene glycol (5%), sodium chloride (1%), and potassium chloride (1%)
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	seedling	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought	salT mRNA accumulates very rapidly in sheaths and roots from mature plants and seedlings upon treatment with Murashige and Skoog salts (1%), air drying, abscisic acid (20 microM), polyethylene glycol (5%), sodium chloride (1%), and potassium chloride (1%)
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	ethylene	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought	salT mRNA accumulates very rapidly in sheaths and roots from mature plants and seedlings upon treatment with Murashige and Skoog salts (1%), air drying, abscisic acid (20 microM), polyethylene glycol (5%), sodium chloride (1%), and potassium chloride (1%)
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	salt	Exogenous application of brassinosteroid offers tolerance to salinity by altering stress responses in rice variety Pusa Basmati-1	Expression of various brassinosteroids (OsBRI1, OsDWF4) and salt (SalT) responsive genes, revealed the down regulation of OsDWF4 with application of EBL and upregulation of SalT in presence of salt stress thereby confirming the efficacy of the treatments
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	salt	Exogenous application of brassinosteroid offers tolerance to salinity by altering stress responses in rice variety Pusa Basmati-1	Interestingly, a significant down regulation of SalT gene was observed on application of EBL along with salt compared to salt treatment alone
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	salt	Exogenous application of brassinosteroid offers tolerance to salinity by altering stress responses in rice variety Pusa Basmati-1	On the other hand, the application of EBL alone and in combination with salt has resulted in upregulation of OsBRI1
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	salt	Identification of sucrose-regulated genes in cultured rice cells using mRNA differential display	8% homology to the salT gene, and clones SI1 and SR3 show 88
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	salt stress	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought	The organ-specific response of salT is correlatable with the pattern of Na+ accumulation during salt stress
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	potassium	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought	salT mRNA accumulates very rapidly in sheaths and roots from mature plants and seedlings upon treatment with Murashige and Skoog salts (1%), air drying, abscisic acid (20 microM), polyethylene glycol (5%), sodium chloride (1%), and potassium chloride (1%)
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	salt	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought	Using an oligonucleotide probe based on this information, a cDNA clone, salT, was selected and found to contain an open reading frame coding for a protein of 145 amino acid residues
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	salt	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought	salT mRNA accumulates very rapidly in sheaths and roots from mature plants and seedlings upon treatment with Murashige and Skoog salts (1%), air drying, abscisic acid (20 microM), polyethylene glycol (5%), sodium chloride (1%), and potassium chloride (1%)
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	salt	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought	The organ-specific response of salT is correlatable with the pattern of Na+ accumulation during salt stress
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	salt stress	Exogenous application of brassinosteroid offers tolerance to salinity by altering stress responses in rice variety Pusa Basmati-1	Expression of various brassinosteroids (OsBRI1, OsDWF4) and salt (SalT) responsive genes, revealed the down regulation of OsDWF4 with application of EBL and upregulation of SalT in presence of salt stress thereby confirming the efficacy of the treatments
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	resistance	A Magnaporthe Chitinase Interacts with a Rice Jacalin-related Lectin to Promote Host Colonization.	Overexpression of OsMBL1 led to activation of rice defense responsive genes and a chitin-induced reactive oxygen species (ROS) burst, thereby enhancing resistance to M
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	defense	A Magnaporthe Chitinase Interacts with a Rice Jacalin-related Lectin to Promote Host Colonization.	Overexpression of OsMBL1 led to activation of rice defense responsive genes and a chitin-induced reactive oxygen species (ROS) burst, thereby enhancing resistance to M
OsSalT|OsMBL1	Os01g0348900	LOC_Os01g24710	reactive oxygen species	A Magnaporthe Chitinase Interacts with a Rice Jacalin-related Lectin to Promote Host Colonization.	Overexpression of OsMBL1 led to activation of rice defense responsive genes and a chitin-induced reactive oxygen species (ROS) burst, thereby enhancing resistance to M
OsSAMDC	Os04g0498600	LOC_Os04g42095|LOC_Os04g42090	temperature	Differential expression of an S-adenosyl-L-methionine decarboxylase gene involved in polyamine biosynthesis under low temperature stress in japonica and indica rice genotypes	These results suggest that the induction of the OsSAMDC gene in response to cold may be used as a molecular marker for the ability of rice seedlings to withstand exposure to low temperatures
OsSAMDC	Os04g0498600	LOC_Os04g42095|LOC_Os04g42090	abiotic stress	Differential expression of an S-adenosyl-L-methionine decarboxylase gene involved in polyamine biosynthesis under low temperature stress in japonica and indica rice genotypes	We also analyzed the response of OsSAMDC to various abiotic stress treatments and plant hormones
OsSAMDC	Os04g0498600	LOC_Os04g42095|LOC_Os04g42090	resistant	Differential expression of an S-adenosyl-L-methionine decarboxylase gene involved in polyamine biosynthesis under low temperature stress in japonica and indica rice genotypes	Upon exposure to cold stress (5 degrees C) the level of OsSAMDC transcripts in the cold-resistant Yukihikari genotype continued to increase for up to 72 h
OsSAMDC	Os04g0498600	LOC_Os04g42095|LOC_Os04g42090	seedling	Differential expression of an S-adenosyl-L-methionine decarboxylase gene involved in polyamine biosynthesis under low temperature stress in japonica and indica rice genotypes	These results suggest that the induction of the OsSAMDC gene in response to cold may be used as a molecular marker for the ability of rice seedlings to withstand exposure to low temperatures
OsSAMDC	Os04g0498600	LOC_Os04g42095|LOC_Os04g42090	cold stress	Differential expression of an S-adenosyl-L-methionine decarboxylase gene involved in polyamine biosynthesis under low temperature stress in japonica and indica rice genotypes	Upon exposure to cold stress (5 degrees C) the level of OsSAMDC transcripts in the cold-resistant Yukihikari genotype continued to increase for up to 72 h
OsSAMS1	Os05g0135700	LOC_Os05g04510	grain size	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsSAMS1	Os05g0135700	LOC_Os05g04510	leaf	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Phenotypically, overexpression of OsFBK12 led to a delay in leaf senescence and germination and increased seed size, whereas knockdown lines of either OsFBK12 or OsSAMS1 promoted the senescence program
OsSAMS1	Os05g0135700	LOC_Os05g04510	leaf	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsSAMS1	Os05g0135700	LOC_Os05g04510	leaf	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice
OsSAMS1	Os05g0135700	LOC_Os05g04510	flower	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	Here, we demonstrate that OsSAMS1, 2 and 3 are essential for histone H3K4me3 and DNA methylation to regulate gene expression related to flowering in Oryza sativa
OsSAMS1	Os05g0135700	LOC_Os05g04510	flower	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	RNA interference (RNAi) transgenic rice with downregulated transcripts of OsSAMS1, 2 and 3 showed pleiotropic phenotypes, including dwarfism, reduced fertility, delayed germination, as well as late flowering
OsSAMS1	Os05g0135700	LOC_Os05g04510	flower	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes)
OsSAMS1	Os05g0135700	LOC_Os05g04510	senescence	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Phenotypically, overexpression of OsFBK12 led to a delay in leaf senescence and germination and increased seed size, whereas knockdown lines of either OsFBK12 or OsSAMS1 promoted the senescence program
OsSAMS1	Os05g0135700	LOC_Os05g04510	senescence	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsSAMS1	Os05g0135700	LOC_Os05g04510	senescence	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice
OsSAMS1	Os05g0135700	LOC_Os05g04510	dwarf	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	RNA interference (RNAi) transgenic rice with downregulated transcripts of OsSAMS1, 2 and 3 showed pleiotropic phenotypes, including dwarfism, reduced fertility, delayed germination, as well as late flowering
OsSAMS1	Os05g0135700	LOC_Os05g04510	ethylene	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	OsFBK12-RNA interference lines and OsSAMS1 overexpression lines showed increased ethylene levels, while OsFBK12-OX lines and OsSAMS1-RNA interference plants exhibited decreased ethylene
OsSAMS1	Os05g0135700	LOC_Os05g04510	ethylene	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsSAMS1	Os05g0135700	LOC_Os05g04510	heading date	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes)
OsSAMS1	Os05g0135700	LOC_Os05g04510	fertility	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice	RNA interference (RNAi) transgenic rice with downregulated transcripts of OsSAMS1, 2 and 3 showed pleiotropic phenotypes, including dwarfism, reduced fertility, delayed germination, as well as late flowering
OsSAMS1	Os05g0135700	LOC_Os05g04510	seed size	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Phenotypically, overexpression of OsFBK12 led to a delay in leaf senescence and germination and increased seed size, whereas knockdown lines of either OsFBK12 or OsSAMS1 promoted the senescence program
OsSAMS1	Os05g0135700	LOC_Os05g04510	seed	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Phenotypically, overexpression of OsFBK12 led to a delay in leaf senescence and germination and increased seed size, whereas knockdown lines of either OsFBK12 or OsSAMS1 promoted the senescence program
OsSAMS1	Os05g0135700	LOC_Os05g04510	grain	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice	Our results suggest that OsFBK12 is involved in the 26S proteasome pathway by interacting with Oryza sativa S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN and that it targets the substrate OsSAMS1 for degradation, triggering changes in ethylene levels for the regulation of leaf senescence and grain size
OsSAMS1	Os05g0135700	LOC_Os05g04510	ethylene	A viral protein promotes host SAMS1 activity and ethylene production for the benefit of virus infection.	RDV-encoded Pns11 protein specifically interacted with OsSAMS1 to enhance its enzymatic activity, leading to higher ethylene levels in both RDV-infected and Pns11-overexpressing rice
OsSAP	Os09g0425900	LOC_Os09g25760	drought	Identification of a drought-induced rice gene, OsSAP, that suppresses Bax-induced cell death in yeast	OsSAP was both highly and rapidly expressed in response to drought stress
OsSAP	Os09g0425900	LOC_Os09g25760	drought	Identification of a drought-induced rice gene, OsSAP, that suppresses Bax-induced cell death in yeast	Identification of a drought-induced rice gene, OsSAP, that suppresses Bax-induced cell death in yeast
OsSAP	Os09g0425900	LOC_Os09g25760	mitochondria	Identification of a drought-induced rice gene, OsSAP, that suppresses Bax-induced cell death in yeast	Additionally, OsSAP was found to be localized to the mitochondria
OsSAP	Os09g0425900	LOC_Os09g25760	cell death	Identification of a drought-induced rice gene, OsSAP, that suppresses Bax-induced cell death in yeast	Identification of a drought-induced rice gene, OsSAP, that suppresses Bax-induced cell death in yeast
OsSAP	Os09g0425900	LOC_Os09g25760	senescence	Identification of a drought-induced rice gene, OsSAP, that suppresses Bax-induced cell death in yeast	sativa cDNA encoding R12H780 was a highly conserved putative senescence-associated-protein (OsSAP)
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	abiotic stress	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Their stress-inducible expression provided the protection against yield loss in transgenic plants, indicating the agronomic relevance of OsSAP11 and OsRLCK253 in conferring abiotic stress tolerance
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	yield	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Their stress-inducible expression provided the protection against yield loss in transgenic plants, indicating the agronomic relevance of OsSAP11 and OsRLCK253 in conferring abiotic stress tolerance
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	salt stress	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Functionally, both OsSAP11 and OsRLCK253 could improve the water-deficit and salt stress tolerance in transgenic Arabidopsis plants via a signaling pathway affecting the expression of several common endogenous genes
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	salt	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants	Functionally, both OsSAP11 and OsRLCK253 could improve the water-deficit and salt stress tolerance in transgenic Arabidopsis plants via a signaling pathway affecting the expression of several common endogenous genes
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	leaf	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	While the abundance of OsPAP26 transcript is not affected by Pi supply, it is upregulated during leaf senescence
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	leaf	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	Furthermore, Pi deprivation and leaf senescence greatly increased the abundance of OsPAP26 protein
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	leaf senescence	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	While the abundance of OsPAP26 transcript is not affected by Pi supply, it is upregulated during leaf senescence
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	leaf senescence	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	Furthermore, Pi deprivation and leaf senescence greatly increased the abundance of OsPAP26 protein
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	senescence	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	While the abundance of OsPAP26 transcript is not affected by Pi supply, it is upregulated during leaf senescence
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	senescence	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	Furthermore, Pi deprivation and leaf senescence greatly increased the abundance of OsPAP26 protein
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	growth	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	Overexpression or RNA interference (RNAi) of OsPAP26 in transgenic rice significantly increased or reduced APase activities in leaves, roots and growth medium, respectively
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	growth	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	Western blot analysis of protein extracts from callus growth medium confirmed that OsPAP26 is a secreted PAP
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	growth	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	OsPAP26-overexpressing plants were capable of converting more ATP into inorganic Pi in the growth medium, which further supported the potential role of OsPAP26 in utilizing organic P in rhizosphere
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	Pi	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	While the abundance of OsPAP26 transcript is not affected by Pi supply, it is upregulated during leaf senescence
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	Pi	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	Furthermore, Pi deprivation and leaf senescence greatly increased the abundance of OsPAP26 protein
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	Pi	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	OsPAP26-overexpressing plants were capable of converting more ATP into inorganic Pi in the growth medium, which further supported the potential role of OsPAP26 in utilizing organic P in rhizosphere
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	Pi	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	In summary, we concluded that OsPAP26 perform dual functions in plants: Pi remobilization from senescing to non-senescing leaves and organic P utilization
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	phosphate	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	pi	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	While the abundance of OsPAP26 transcript is not affected by Pi supply, it is upregulated during leaf senescence
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	pi	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	Furthermore, Pi deprivation and leaf senescence greatly increased the abundance of OsPAP26 protein
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	pi	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	OsPAP26-overexpressing plants were capable of converting more ATP into inorganic Pi in the growth medium, which further supported the potential role of OsPAP26 in utilizing organic P in rhizosphere
OsSAP1|OsPAP26	Os06g0643900	LOC_Os06g43640	pi	OsPAP26 encodes a major purple acid phosphatase and regulates phosphate remobilization in rice.	In summary, we concluded that OsPAP26 perform dual functions in plants: Pi remobilization from senescing to non-senescing leaves and organic P utilization
OsSAP16	Os07g0569700	LOC_Os07g38240	development	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).	There were no differences in stomatal development or morphology in either of these mutants, although overexpression of OsSAP16 reduced stomatal conductance
OsSAP16	Os07g0569700	LOC_Os07g38240	photosynthesis	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).
OsSAP16	Os07g0569700	LOC_Os07g38240	transcription factor	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).	Whole transcriptome analysis showed that overexpression of OsSAP16 led to global changes in gene expression consistent with the function of zinc-finger transcription factors
OsSAP16	Os07g0569700	LOC_Os07g38240	stress	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).
OsSAP16	Os07g0569700	LOC_Os07g38240	stomatal	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).	There were no differences in stomatal development or morphology in either of these mutants, although overexpression of OsSAP16 reduced stomatal conductance
OsSAP16	Os07g0569700	LOC_Os07g38240	stress response	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).
OsSAP16	Os07g0569700	LOC_Os07g38240	temperature	Natural variation reveals that OsSAP16 controls low-temperature germination in rice.	Loss of OsSAP16 function reduces germination while greater expression of OsSAP16 enhances germination at low temperature
OsSAP6	Os03g0792900	LOC_Os03g57890	root	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 The bud length and total root length of OsSAP6 overexpression rice were significantly longer than those of Lj11 (Oryza sativa longjing11) during germination stage, and the survival rates, plant height and malondialdehyde content at the seedling stage showed tolerance growth of saline-alkaline stress
OsSAP6	Os03g0792900	LOC_Os03g57890	growth	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 The bud length and total root length of OsSAP6 overexpression rice were significantly longer than those of Lj11 (Oryza sativa longjing11) during germination stage, and the survival rates, plant height and malondialdehyde content at the seedling stage showed tolerance growth of saline-alkaline stress
OsSAP6	Os03g0792900	LOC_Os03g57890	stress	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.
OsSAP6	Os03g0792900	LOC_Os03g57890	stress	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 In this study, the expression levels of OsSAP6 in leaves and roots were upregulated with increasing NaHCO(3) stress duration
OsSAP6	Os03g0792900	LOC_Os03g57890	stress	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 The bud length and total root length of OsSAP6 overexpression rice were significantly longer than those of Lj11 (Oryza sativa longjing11) during germination stage, and the survival rates, plant height and malondialdehyde content at the seedling stage showed tolerance growth of saline-alkaline stress
OsSAP6	Os03g0792900	LOC_Os03g57890	stress	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 It is speculated that OsSAP6 responds to soda salinity stress and interacts with OsPK5 to positively regulate soda saline-alkaline tolerance through ROS homeostasis
OsSAP6	Os03g0792900	LOC_Os03g57890	stress	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 This study revealed the features of OsSAP6 involved in response to soda saline-alkaline stress and the interaction with OsPK5, which provided resources for breeding aimed at improving the soda saline-alkaline stress tolerance of rice
OsSAP6	Os03g0792900	LOC_Os03g57890	seedling	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 The bud length and total root length of OsSAP6 overexpression rice were significantly longer than those of Lj11 (Oryza sativa longjing11) during germination stage, and the survival rates, plant height and malondialdehyde content at the seedling stage showed tolerance growth of saline-alkaline stress
OsSAP6	Os03g0792900	LOC_Os03g57890	alkaline tolerance	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 CONCLUSION: Overexpression of OsSAP6 in rice significantly enhanced saline-alkaline tolerance compared with the wild type
OsSAP6	Os03g0792900	LOC_Os03g57890	alkaline tolerance	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 It is speculated that OsSAP6 responds to soda salinity stress and interacts with OsPK5 to positively regulate soda saline-alkaline tolerance through ROS homeostasis
OsSAP6	Os03g0792900	LOC_Os03g57890	alkaline stress	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.
OsSAP6	Os03g0792900	LOC_Os03g57890	alkaline stress	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 The bud length and total root length of OsSAP6 overexpression rice were significantly longer than those of Lj11 (Oryza sativa longjing11) during germination stage, and the survival rates, plant height and malondialdehyde content at the seedling stage showed tolerance growth of saline-alkaline stress
OsSAP6	Os03g0792900	LOC_Os03g57890	alkaline stress	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 This study revealed the features of OsSAP6 involved in response to soda saline-alkaline stress and the interaction with OsPK5, which provided resources for breeding aimed at improving the soda saline-alkaline stress tolerance of rice
OsSAP6	Os03g0792900	LOC_Os03g57890	salinity	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 It is speculated that OsSAP6 responds to soda salinity stress and interacts with OsPK5 to positively regulate soda saline-alkaline tolerance through ROS homeostasis
OsSAP6	Os03g0792900	LOC_Os03g57890	tolerance	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.
OsSAP6	Os03g0792900	LOC_Os03g57890	tolerance	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 The bud length and total root length of OsSAP6 overexpression rice were significantly longer than those of Lj11 (Oryza sativa longjing11) during germination stage, and the survival rates, plant height and malondialdehyde content at the seedling stage showed tolerance growth of saline-alkaline stress
OsSAP6	Os03g0792900	LOC_Os03g57890	tolerance	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 CONCLUSION: Overexpression of OsSAP6 in rice significantly enhanced saline-alkaline tolerance compared with the wild type
OsSAP6	Os03g0792900	LOC_Os03g57890	tolerance	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 It is speculated that OsSAP6 responds to soda salinity stress and interacts with OsPK5 to positively regulate soda saline-alkaline tolerance through ROS homeostasis
OsSAP6	Os03g0792900	LOC_Os03g57890	tolerance	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 This study revealed the features of OsSAP6 involved in response to soda saline-alkaline stress and the interaction with OsPK5, which provided resources for breeding aimed at improving the soda saline-alkaline stress tolerance of rice
OsSAP6	Os03g0792900	LOC_Os03g57890	nucleus	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 OsSAP6 was located in nucleus and cytoplasm
OsSAP6	Os03g0792900	LOC_Os03g57890	stress tolerance	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.
OsSAP6	Os03g0792900	LOC_Os03g57890	stress tolerance	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 This study revealed the features of OsSAP6 involved in response to soda saline-alkaline stress and the interaction with OsPK5, which provided resources for breeding aimed at improving the soda saline-alkaline stress tolerance of rice
OsSAP6	Os03g0792900	LOC_Os03g57890	cytoplasm	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 OsSAP6 was located in nucleus and cytoplasm
OsSAP6	Os03g0792900	LOC_Os03g57890	homeostasis	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 It is speculated that OsSAP6 responds to soda salinity stress and interacts with OsPK5 to positively regulate soda saline-alkaline tolerance through ROS homeostasis
OsSAP6	Os03g0792900	LOC_Os03g57890	breeding	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 This study revealed the features of OsSAP6 involved in response to soda saline-alkaline stress and the interaction with OsPK5, which provided resources for breeding aimed at improving the soda saline-alkaline stress tolerance of rice
OsSAP6	Os03g0792900	LOC_Os03g57890	salinity stress	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 It is speculated that OsSAP6 responds to soda salinity stress and interacts with OsPK5 to positively regulate soda saline-alkaline tolerance through ROS homeostasis
OsSAP6	Os03g0792900	LOC_Os03g57890	height	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 The bud length and total root length of OsSAP6 overexpression rice were significantly longer than those of Lj11 (Oryza sativa longjing11) during germination stage, and the survival rates, plant height and malondialdehyde content at the seedling stage showed tolerance growth of saline-alkaline stress
OsSAP6	Os03g0792900	LOC_Os03g57890	plant height	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 The bud length and total root length of OsSAP6 overexpression rice were significantly longer than those of Lj11 (Oryza sativa longjing11) during germination stage, and the survival rates, plant height and malondialdehyde content at the seedling stage showed tolerance growth of saline-alkaline stress
OsSAP6	Os03g0792900	LOC_Os03g57890	root length	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	 The bud length and total root length of OsSAP6 overexpression rice were significantly longer than those of Lj11 (Oryza sativa longjing11) during germination stage, and the survival rates, plant height and malondialdehyde content at the seedling stage showed tolerance growth of saline-alkaline stress
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	ABA	Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors	We have shown recently that three members of the rice SnRK2 protein kinase family, SAPK8, SAPK9 and SAPK10, are activated by ABA signal as well as by hyperosmotic stress
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	Kinase	Protein kinase OsSAPK8 functions as an essential activator of S-type anion channel OsSLAC1, which is nitrate-selective in rice.	Protein kinase OsSAPK8 functions as an essential activator of S-type anion channel OsSLAC1, which is nitrate-selective in rice.
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	Kinase	Protein kinase OsSAPK8 functions as an essential activator of S-type anion channel OsSLAC1, which is nitrate-selective in rice.	Here, we report that protein kinase OsSAPK8 interacts with and activates OsSLAC1 mainly by phosphorylating serine 129 (S129) of OsSLAC1, and this phosphorylating site corresponds to the specific phosphorylating site serine 120 (S120) of AtSLAC1 for AtOST1
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	protein kinase	Protein kinase OsSAPK8 functions as an essential activator of S-type anion channel OsSLAC1, which is nitrate-selective in rice.	Protein kinase OsSAPK8 functions as an essential activator of S-type anion channel OsSLAC1, which is nitrate-selective in rice.
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	protein kinase	Protein kinase OsSAPK8 functions as an essential activator of S-type anion channel OsSLAC1, which is nitrate-selective in rice.	Here, we report that protein kinase OsSAPK8 interacts with and activates OsSLAC1 mainly by phosphorylating serine 129 (S129) of OsSLAC1, and this phosphorylating site corresponds to the specific phosphorylating site serine 120 (S120) of AtSLAC1 for AtOST1
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	drought	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	The ossapk8 mutants showed lower tolerance to low-temperature, high salinity and drought stresses at the vegetative stages
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	salinity	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	The ossapk8 mutants showed lower tolerance to low-temperature, high salinity and drought stresses at the vegetative stages
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	salt	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Our results provide evidence for OsSAPK8 acting as a positive regulator in cold, drought, and salt stress responses
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	tolerance	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	The ossapk8 mutants showed lower tolerance to low-temperature, high salinity and drought stresses at the vegetative stages
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	yield	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	We further confirmed that the yield was reduced in ossapk8 mutant lines compared with the wild type
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	abiotic stress	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	vegetative	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	The ossapk8 mutants showed lower tolerance to low-temperature, high salinity and drought stresses at the vegetative stages
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	salt stress	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Our results provide evidence for OsSAPK8 acting as a positive regulator in cold, drought, and salt stress responses
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	stress	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	stress	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Our results provide evidence for OsSAPK8 acting as a positive regulator in cold, drought, and salt stress responses
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	biotic stress	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	Kinase	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	protein kinase	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	drought stress	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	The ossapk8 mutants showed lower tolerance to low-temperature, high salinity and drought stresses at the vegetative stages
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	stress response	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	stress response	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Our results provide evidence for OsSAPK8 acting as a positive regulator in cold, drought, and salt stress responses
OsSAPK8|SAPK8	Os03g0764800	LOC_Os03g55600	kinase	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.
OsSar1a	Os01g0338000	LOC_Os01g23620	seed	Small GTPase Sar1 is crucial for proglutelin and alpha-globulin export from the endoplasmic reticulum in rice endosperm	However, simultaneous knockdown of OsSar1a/b/c resulted in floury and shrunken seeds, with an increased level of glutelin precursor and decreased level of the mature alpha- and beta-subunit
OsSar1a	Os01g0338000	LOC_Os01g23620	endosperm	Small GTPase Sar1 is crucial for proglutelin and alpha-globulin export from the endoplasmic reticulum in rice endosperm	To reveal the route by which glutelin and alpha-globulin exit the ER, four putative Sar1 genes (OsSar1a/b/c/d) were cloned from rice, and transgenic rice were generated with Sar1 overexpressed or suppressed by RNA interference (RNAi) specifically in the endosperm under the control of the rice glutelin promoter
OsSar1a	Os01g0338000	LOC_Os01g23620	endosperm	Small GTPase Sar1 is crucial for proglutelin and alpha-globulin export from the endoplasmic reticulum in rice endosperm	OsSar1abc RNAi endosperm generated numerous, spherical, novel protein bodies with highly electron-dense matrixes containing both glutelin and alpha-globulin
OsSar1a	Os01g0338000	LOC_Os01g23620	endosperm	Small GTPase Sar1 is crucial for proglutelin and alpha-globulin export from the endoplasmic reticulum in rice endosperm	These results indicated that OsSar1a/b/c play a crucial role in storage proteins exiting from the ER, with functional redundancy in rice endosperm, and glutelin and alpha-globulin transported together from the ER to the Golgi apparatus by a pathway mediated by coat protein complex II
OsSARD1	Os08g0360300	LOC_Os08g27170	defense	Molecular dissection of the response of the rice Systemic Acquired Resistance Deficient 1 (SARD1) gene to different types of ionizing radiation.	The results indicate that OsSARD1 plays an important role in the regulation of the defense responses to GR and IB irradiation and exhibits phytohormone induced expression
OsSARD1	Os08g0360300	LOC_Os08g27170	defense response	Molecular dissection of the response of the rice Systemic Acquired Resistance Deficient 1 (SARD1) gene to different types of ionizing radiation.	The results indicate that OsSARD1 plays an important role in the regulation of the defense responses to GR and IB irradiation and exhibits phytohormone induced expression
OsSARD1	Os08g0360300	LOC_Os08g27170	nucleus	Molecular dissection of the response of the rice Systemic Acquired Resistance Deficient 1 (SARD1) gene to different types of ionizing radiation.	In addition, OsSARD1 protein was abundantly accumulated in the nucleus
OsSARD1	Os08g0360300	LOC_Os08g27170	JA	Molecular dissection of the response of the rice Systemic Acquired Resistance Deficient 1 (SARD1) gene to different types of ionizing radiation.	The OsSARD1 gene was induced after exposure to SA and JA
OsSARD1	Os08g0360300	LOC_Os08g27170	phytohormone	Molecular dissection of the response of the rice Systemic Acquired Resistance Deficient 1 (SARD1) gene to different types of ionizing radiation.	The results indicate that OsSARD1 plays an important role in the regulation of the defense responses to GR and IB irradiation and exhibits phytohormone induced expression
OsSARD1	Os08g0360300	LOC_Os08g27170	sa	Molecular dissection of the response of the rice Systemic Acquired Resistance Deficient 1 (SARD1) gene to different types of ionizing radiation.	The OsSARD1 gene was induced after exposure to SA and JA
OsSARD1	Os08g0360300	LOC_Os08g27170	SA	Molecular dissection of the response of the rice Systemic Acquired Resistance Deficient 1 (SARD1) gene to different types of ionizing radiation.	The OsSARD1 gene was induced after exposure to SA and JA
OsSAUR33	Os08g0452500	LOC_Os08g35110	seed	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	seed	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	Here, we observed that disruption of OsSAUR33 resulted in reduced germination rates and low seed uniformity in early germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	seed	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	RNA-seq analysis revealed that OsSAUR33 modulated seed vigor by affecting the mobilization of stored reserves during germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	seed	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	Disruption of OsSAUR33 increased sugar-sensitive phenotypes in early germination, suggesting OsSAUR33 likely affects seed vigor through the sugar pathway
OsSAUR33	Os08g0452500	LOC_Os08g35110	seed	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	One elite haplotype of OsSAUR33 associated with higher seed vigor was identified mainly in indica accessions
OsSAUR33	Os08g0452500	LOC_Os08g35110	seed	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	This study provides insight into the effects of OsSAUR33 on seed vigor in rice
OsSAUR33	Os08g0452500	LOC_Os08g35110	seed germination	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	Kinase	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	OsSAUR33 interacted with the sucrose non-fermenting-1-related protein kinase OsSnRK1A, a regulator of the sugar signaling pathway, which influences the expression of sugar signaling-related genes during germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	protein kinase	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	OsSAUR33 interacted with the sucrose non-fermenting-1-related protein kinase OsSnRK1A, a regulator of the sugar signaling pathway, which influences the expression of sugar signaling-related genes during germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	sugar	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	sugar	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	Disruption of OsSAUR33 increased the soluble sugar content in dry mature grains and seeds during early germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	sugar	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	OsSAUR33 interacted with the sucrose non-fermenting-1-related protein kinase OsSnRK1A, a regulator of the sugar signaling pathway, which influences the expression of sugar signaling-related genes during germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	sugar	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	Disruption of OsSAUR33 increased sugar-sensitive phenotypes in early germination, suggesting OsSAUR33 likely affects seed vigor through the sugar pathway
OsSAUR33	Os08g0452500	LOC_Os08g35110	kinase	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	OsSAUR33 interacted with the sucrose non-fermenting-1-related protein kinase OsSnRK1A, a regulator of the sugar signaling pathway, which influences the expression of sugar signaling-related genes during germination
OsSAUR33	Os08g0452500	LOC_Os08g35110	sucrose	The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination	OsSAUR33 interacted with the sucrose non-fermenting-1-related protein kinase OsSnRK1A, a regulator of the sugar signaling pathway, which influences the expression of sugar signaling-related genes during germination
OsSAUR45	Os09g0546100	LOC_Os09g37400	root	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Rice lines overexpressing OsSAUR45 displayed pleiotropic developmental defects including reduced plant height and primary root length, fewer adventitious roots, narrower leaves, and reduced seed setting
OsSAUR45	Os09g0546100	LOC_Os09g37400	growth	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	This research is the first to demonstrate that OsSAUR45 is involved in plant growth though affecting auxin synthesis and transport by repressing OsYUCCA and OsPIN gene expression in rice
OsSAUR45	Os09g0546100	LOC_Os09g37400	growth	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	These results demonstrate that OsSAUR45 is involved in plant growth by affecting auxin synthesis and transport through the repression of OsYUCCA and OsPIN gene expression in rice
OsSAUR45	Os09g0546100	LOC_Os09g37400	seed	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Rice lines overexpressing OsSAUR45 displayed pleiotropic developmental defects including reduced plant height and primary root length, fewer adventitious roots, narrower leaves, and reduced seed setting
OsSAUR45	Os09g0546100	LOC_Os09g37400	auxin	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.
OsSAUR45	Os09g0546100	LOC_Os09g37400	auxin	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	This research is the first to demonstrate that OsSAUR45 is involved in plant growth though affecting auxin synthesis and transport by repressing OsYUCCA and OsPIN gene expression in rice
OsSAUR45	Os09g0546100	LOC_Os09g37400	auxin	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Auxin levels and transport were reduced in the OsSAUR45 overexpression lines, potentially because of decreased expression of Flavin-binding monooxygenase family proteins (OsYUCCAs) and PIN-FORMED family proteins (OsPINs)
OsSAUR45	Os09g0546100	LOC_Os09g37400	auxin	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Exogenous auxin application rapidly induced OsSAUR45 expression and partially restored the phenotype of rice lines overexpressing OsSAUR45
OsSAUR45	Os09g0546100	LOC_Os09g37400	auxin	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	These results demonstrate that OsSAUR45 is involved in plant growth by affecting auxin synthesis and transport through the repression of OsYUCCA and OsPIN gene expression in rice
OsSAUR45	Os09g0546100	LOC_Os09g37400	cytoplasm	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	OsSAUR45 is expressed in a tissue-specific pattern and is localized to the cytoplasm
OsSAUR45	Os09g0546100	LOC_Os09g37400	height	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Rice lines overexpressing OsSAUR45 displayed pleiotropic developmental defects including reduced plant height and primary root length, fewer adventitious roots, narrower leaves, and reduced seed setting
OsSAUR45	Os09g0546100	LOC_Os09g37400	plant height	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Rice lines overexpressing OsSAUR45 displayed pleiotropic developmental defects including reduced plant height and primary root length, fewer adventitious roots, narrower leaves, and reduced seed setting
OsSAUR45	Os09g0546100	LOC_Os09g37400	adventitious root	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Rice lines overexpressing OsSAUR45 displayed pleiotropic developmental defects including reduced plant height and primary root length, fewer adventitious roots, narrower leaves, and reduced seed setting
OsSAUR45	Os09g0546100	LOC_Os09g37400	primary root	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Rice lines overexpressing OsSAUR45 displayed pleiotropic developmental defects including reduced plant height and primary root length, fewer adventitious roots, narrower leaves, and reduced seed setting
OsSAUR45	Os09g0546100	LOC_Os09g37400	plant growth	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	This research is the first to demonstrate that OsSAUR45 is involved in plant growth though affecting auxin synthesis and transport by repressing OsYUCCA and OsPIN gene expression in rice
OsSAUR45	Os09g0546100	LOC_Os09g37400	plant growth	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	These results demonstrate that OsSAUR45 is involved in plant growth by affecting auxin synthesis and transport through the repression of OsYUCCA and OsPIN gene expression in rice
OsSAUR45	Os09g0546100	LOC_Os09g37400	root length	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Rice lines overexpressing OsSAUR45 displayed pleiotropic developmental defects including reduced plant height and primary root length, fewer adventitious roots, narrower leaves, and reduced seed setting
Ossbf1	Os01g0645200	LOC_Os01g45750	transporter	The novel rice (Oryza sativa L.) gene OsSbf1 encodes a putative member of the Na+/bile acid symporter family	One of the isolated cDNAs represented a novel protein, OsSBF1, with high homology to mammalian Na+/bile acid transporters and to sodium‐dependent transporters from bacteria
Ossbf1	Os01g0645200	LOC_Os01g45750	growth	The novel rice (Oryza sativa L.) gene OsSbf1 encodes a putative member of the Na+/bile acid symporter family	Expression of OsSbf1 in deep‐water rice was shown to be elevated by growth‐inducing treatments
OsSBP	Os01g0916400	LOC_Os01g68770	biotic stress	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	Additionally, the OsSBP protein might have a role in modulating the defense mechanism to biotic stress in rice
OsSBP	Os01g0916400	LOC_Os01g68770	blast	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	The rice Oryza sativa selenium-binding protein homologue (OsSBP) gene encodes a homologue of mammalian selenium-binding proteins, and it has been isolated as one of the genes induced by treating a plant with a cerebroside elicitor from rice blast fungus
OsSBP	Os01g0916400	LOC_Os01g68770	blast	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	Plants overexpressing OsSBP showed enhanced resistance to a virulent strain of rice blast fungus as well as to rice bacterial blight
OsSBP	Os01g0916400	LOC_Os01g68770	blast	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	The expression of defense-related genes and the accumulation of phytoalexin after infection by rice blast fungus were accelerated in the OsSBP overexpressors
OsSBP	Os01g0916400	LOC_Os01g68770	blast	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins
OsSBP	Os01g0916400	LOC_Os01g68770	blight	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	Plants overexpressing OsSBP showed enhanced resistance to a virulent strain of rice blast fungus as well as to rice bacterial blight
OsSBP	Os01g0916400	LOC_Os01g68770	blight	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins
OsSBP	Os01g0916400	LOC_Os01g68770	defense	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	The possible role of OsSBP in plant defense was evaluated by using a transgenic approach
OsSBP	Os01g0916400	LOC_Os01g68770	defense	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	The expression of defense-related genes and the accumulation of phytoalexin after infection by rice blast fungus were accelerated in the OsSBP overexpressors
OsSBP	Os01g0916400	LOC_Os01g68770	defense	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	These results suggest that the upregulation of OsSBP expression conferred enhanced tolerance to different pathogens, possibly by increasing plant sensitivity to endogenous defense responses
OsSBP	Os01g0916400	LOC_Os01g68770	defense	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	Additionally, the OsSBP protein might have a role in modulating the defense mechanism to biotic stress in rice
OsSBP	Os01g0916400	LOC_Os01g68770	defense response	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	These results suggest that the upregulation of OsSBP expression conferred enhanced tolerance to different pathogens, possibly by increasing plant sensitivity to endogenous defense responses
OsSBP	Os01g0916400	LOC_Os01g68770	bacterial blight	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	Plants overexpressing OsSBP showed enhanced resistance to a virulent strain of rice blast fungus as well as to rice bacterial blight
OsSBP	Os01g0916400	LOC_Os01g68770	bacterial blight	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins	Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively ExpressingOsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins
OsSBPase	Os04g0234600	LOC_Os04g16680	chloroplast	A single nucleotide substitution at the 3'-end of SBPase gene involved in Calvin cycle severely affects plant growth and grain yield in rice	In addition, OsSBPase gene was mainly expressed in leaf, and the encoded protein was located in chloroplast
OsSBPase	Os04g0234600	LOC_Os04g16680	plant growth	A single nucleotide substitution at the 3'-end of SBPase gene involved in Calvin cycle severely affects plant growth and grain yield in rice	A single nucleotide substitution at the 3'-end of SBPase gene involved in Calvin cycle severely affects plant growth and grain yield in rice
OsSBPase	Os04g0234600	LOC_Os04g16680	grain yield	A single nucleotide substitution at the 3'-end of SBPase gene involved in Calvin cycle severely affects plant growth and grain yield in rice	A single nucleotide substitution at the 3'-end of SBPase gene involved in Calvin cycle severely affects plant growth and grain yield in rice
OsSCD2|OsCEF3	Os01g0928100	LOC_Os01g70320	growth	Rice STOMATAL CYTOKINESIS DEFECTIVE2 regulates cell expansion by affecting vesicular trafficking in rice.	 Our results suggest that OsSCD2 is involved in clathrin-related vesicular trafficking with an important role in maintaining plant growth in rice
OsSCD2|OsCEF3	Os01g0928100	LOC_Os01g70320	plant growth	Rice STOMATAL CYTOKINESIS DEFECTIVE2 regulates cell expansion by affecting vesicular trafficking in rice.	 Our results suggest that OsSCD2 is involved in clathrin-related vesicular trafficking with an important role in maintaining plant growth in rice
OsSCD2|OsCEF3	Os01g0928100	LOC_Os01g70320	vesicular	Rice STOMATAL CYTOKINESIS DEFECTIVE2 regulates cell expansion by affecting vesicular trafficking in rice.	 Our results suggest that OsSCD2 is involved in clathrin-related vesicular trafficking with an important role in maintaining plant growth in rice
OsSCD2|OsCEF3	Os01g0928100	LOC_Os01g70320	vesicular trafficking	Rice STOMATAL CYTOKINESIS DEFECTIVE2 regulates cell expansion by affecting vesicular trafficking in rice.	 Our results suggest that OsSCD2 is involved in clathrin-related vesicular trafficking with an important role in maintaining plant growth in rice
OsSCD2|OsCEF3	Os01g0928100	LOC_Os01g70320	cell expansion	Rice STOMATAL CYTOKINESIS DEFECTIVE2 regulates cell expansion by affecting vesicular trafficking in rice	Rice STOMATAL CYTOKINESIS DEFECTIVE2 regulates cell expansion by affecting vesicular trafficking in rice
OsSCE1	Os10g0536000	LOC_Os10g39120	grain	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	In addition, overexpression of the OsSCE1 gene alters the biomass and grain yield parameters in transgenic rice plants
OsSCE1	Os10g0536000	LOC_Os10g39120	drought	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.
OsSCE1	Os10g0536000	LOC_Os10g39120	grain yield	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	In addition, overexpression of the OsSCE1 gene alters the biomass and grain yield parameters in transgenic rice plants
OsSCE1	Os10g0536000	LOC_Os10g39120	yield	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	In addition, overexpression of the OsSCE1 gene alters the biomass and grain yield parameters in transgenic rice plants
OsSCE1	Os10g0536000	LOC_Os10g39120	nucleus	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	Interestingly, OsSCE1 is distributed in specific parts of the nucleus and shows sumoylation activities in the absence of a SUMO ligase in E
OsSCE1	Os10g0536000	LOC_Os10g39120	biomass	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	In addition, overexpression of the OsSCE1 gene alters the biomass and grain yield parameters in transgenic rice plants
OsSCE1	Os10g0536000	LOC_Os10g39120	drought stress	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.
OsSCE3	Os04g0580400	LOC_Os04g49130	drought	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.
OsSCE3	Os04g0580400	LOC_Os04g49130	drought	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	Overexpression of the OsSCE3 gene in transgenic rice plants enhances drought stress tolerance
OsSCE3	Os04g0580400	LOC_Os04g49130	tolerance	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	Overexpression of the OsSCE3 gene in transgenic rice plants enhances drought stress tolerance
OsSCE3	Os04g0580400	LOC_Os04g49130	stress	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	Overexpression of the OsSCE3 gene in transgenic rice plants enhances drought stress tolerance
OsSCE3	Os04g0580400	LOC_Os04g49130	drought stress	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.
OsSCE3	Os04g0580400	LOC_Os04g49130	drought stress	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	Overexpression of the OsSCE3 gene in transgenic rice plants enhances drought stress tolerance
OsSCE3	Os04g0580400	LOC_Os04g49130	drought stress	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	Overexpression of the OsSCE3 gene in transgenic rice plants enhances drought stress tolerance
OsSCE3	Os04g0580400	LOC_Os04g49130	stress tolerance	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	Overexpression of the OsSCE3 gene in transgenic rice plants enhances drought stress tolerance
OsSCL30	Os12g0572400	LOC_Os12g38430	leaf	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 Under normal conditions, the expression of OsSCL30 was higher in leaves and leaf sheaths
OsSCL30	Os12g0572400	LOC_Os12g38430	seedlings	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.
OsSCL30	Os12g0572400	LOC_Os12g38430	root	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 In root cells OsSCL30 was localized in the nuclei
OsSCL30	Os12g0572400	LOC_Os12g38430	resistance	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 The results of the rice seedling tolerance and recovery tests showed that overexpression of OsSCL30 diminished the resistance to low temperature, drought and salt stresses in transgenic rice and resulted in larger accumulation of reactive oxygen species
OsSCL30	Os12g0572400	LOC_Os12g38430	seedling	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 The results of the rice seedling tolerance and recovery tests showed that overexpression of OsSCL30 diminished the resistance to low temperature, drought and salt stresses in transgenic rice and resulted in larger accumulation of reactive oxygen species
OsSCL30	Os12g0572400	LOC_Os12g38430	drought	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.
OsSCL30	Os12g0572400	LOC_Os12g38430	drought	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 The results of reverse transcription polymerase chain reaction showed that the expression of OsSCL30 decreased after low temperature, drought and salt treatment
OsSCL30	Os12g0572400	LOC_Os12g38430	drought	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 The results of the rice seedling tolerance and recovery tests showed that overexpression of OsSCL30 diminished the resistance to low temperature, drought and salt stresses in transgenic rice and resulted in larger accumulation of reactive oxygen species
OsSCL30	Os12g0572400	LOC_Os12g38430	salt	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 The results of reverse transcription polymerase chain reaction showed that the expression of OsSCL30 decreased after low temperature, drought and salt treatment
OsSCL30	Os12g0572400	LOC_Os12g38430	salt	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 The results of the rice seedling tolerance and recovery tests showed that overexpression of OsSCL30 diminished the resistance to low temperature, drought and salt stresses in transgenic rice and resulted in larger accumulation of reactive oxygen species
OsSCL30	Os12g0572400	LOC_Os12g38430	tolerance	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.
OsSCL30	Os12g0572400	LOC_Os12g38430	tolerance	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 The results of the rice seedling tolerance and recovery tests showed that overexpression of OsSCL30 diminished the resistance to low temperature, drought and salt stresses in transgenic rice and resulted in larger accumulation of reactive oxygen species
OsSCL30	Os12g0572400	LOC_Os12g38430	abiotic stress	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 In this study, by constructing overexpression vectors D-163 + 1300:OsSCL30 and D-163 + 1300-AcGFP:OsSCL30-GFP, the mechanism of action of OsSCL30 in various abiotic stresses was explored
OsSCL30	Os12g0572400	LOC_Os12g38430	salt stress	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 The results of the rice seedling tolerance and recovery tests showed that overexpression of OsSCL30 diminished the resistance to low temperature, drought and salt stresses in transgenic rice and resulted in larger accumulation of reactive oxygen species
OsSCL30	Os12g0572400	LOC_Os12g38430	biotic stress	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 In this study, by constructing overexpression vectors D-163 + 1300:OsSCL30 and D-163 + 1300-AcGFP:OsSCL30-GFP, the mechanism of action of OsSCL30 in various abiotic stresses was explored
OsSCL30	Os12g0572400	LOC_Os12g38430	R protein	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 Bioinformatics analysis showed that OsSCL30 was located on the chromosome 12 of rice Nipponbare, belonging to the plant-specific SCL subfamily of the SR protein family
OsSCL30	Os12g0572400	LOC_Os12g38430	reactive oxygen species	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	 The results of the rice seedling tolerance and recovery tests showed that overexpression of OsSCL30 diminished the resistance to low temperature, drought and salt stresses in transgenic rice and resulted in larger accumulation of reactive oxygen species
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	leaf	The SCARECROW gene's role in asymmetric cell divisions in rice plants	In leaf primordia, expression of OsSCR was observed in stomatal and ligule formation
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	root	The SCARECROW gene's role in asymmetric cell divisions in rice plants	In the root tip, OsSCR expression was observed in the endodermal cell layer and downregulated in the daughter cortex cell after asymmetric division, just as with Arabidopsis SCR
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	stomatal	The SCARECROW gene's role in asymmetric cell divisions in rice plants	In leaf primordia, expression of OsSCR was observed in stomatal and ligule formation
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	stomatal	The SCARECROW gene's role in asymmetric cell divisions in rice plants	In stomatal development, OsSCR was specifically expressed in the stomatal cell files before formation of guard mother cells (GMCs), and then, its expression was localized in GMCs, when the first asymmetric division occurred to generate the GMCs
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	iaa	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	In tdd1 embryos, the expression patterns of OSH1 and OsSCR, which mark the presumptive apical region and the L2 layer, respectively, are identical to those in WT, suggesting a possibility either that different IAA levels are required for basic pattern formation than for organ formation or that an orthologous gene compensates for TDD1 deficiency during pattern formation
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	stomata	The SCARECROW gene's role in asymmetric cell divisions in rice plants	In leaf primordia, expression of OsSCR was observed in stomatal and ligule formation
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	stomata	The SCARECROW gene's role in asymmetric cell divisions in rice plants	In stomatal development, OsSCR was specifically expressed in the stomatal cell files before formation of guard mother cells (GMCs), and then, its expression was localized in GMCs, when the first asymmetric division occurred to generate the GMCs
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	stomata	The SCARECROW gene's role in asymmetric cell divisions in rice plants	Based on these observations, we proposed that OsSCR is involved not only in the asymmetric division of the cortex/endodermis progenitor cell but also during stomata and ligule formation by establishing the polarization of cytoplasm
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	stomatal development	SCARECROW is deployed in distinct contexts during rice and maize leaf development	The stomatal regulator OsMUTE is downregulated in Osscr1;Osscr2 mutants, indicating that OsSCR acts early in stomatal development.
OsSCR|OsSCR2	Os12g0122000	LOC_Os12g02870	leaf development	SCARECROW is deployed in distinct contexts during rice and maize leaf development	The stomatal regulator OsMUTE is downregulated in Osscr1;Osscr2 mutants, indicating that OsSCR acts early in stomatal development.
OsSCR1	Os11g0124300	LOC_Os11g03110	leaf development	SCARECROW is deployed in distinct contexts during rice and maize leaf development	SCARECROW is deployed in distinct contexts during rice and maize leaf development
OsSCR1	Os11g0124300	LOC_Os11g03110	stomatal development	SCARECROW is deployed in distinct contexts during rice and maize leaf development	The stomatal regulator OsMUTE is downregulated in Osscr1;Osscr2 mutants, indicating that OsSCR acts early in stomatal development.
OsSCYL2	Os01g0616100	LOC_Os01g42950	resistance	A conserved clathrin-coated vesicle component, OsSCYL2, regulates plant innate immunity in rice.	 Although mutants of OsSCYL2 showed additional defects in the photosynthetic system, they exhibited enhanced resistance to bacterial pathogens
OsSCYL2	Os01g0616100	LOC_Os01g42950	cell death	A conserved clathrin-coated vesicle component, OsSCYL2, regulates plant innate immunity in rice.	 Here, we show that mutation of OsSCYL2 in rice gave rise to a novel phenotype-hypersensitive response-like (HR) cell death in a light-dependent manner
OsSCYL2	Os01g0616100	LOC_Os01g42950	cell death	A conserved clathrin-coated vesicle component, OsSCYL2, regulates plant innate immunity in rice.	 OsSCYL2 interacted with OsSPL28, subunit of a clathrin-associated adaptor protein that is known to regulate HR-like cell death in rice
OsSCYL2	Os01g0616100	LOC_Os01g42950	R protein	A conserved clathrin-coated vesicle component, OsSCYL2, regulates plant innate immunity in rice.	 OsSCYL2 interacted with OsSPL28, subunit of a clathrin-associated adaptor protein that is known to regulate HR-like cell death in rice
OsSDD1	Os03g0143100	LOC_Os03g04950	development	RSD1 Is Essential for Stomatal Patterning and Files in Rice.	This study characterized the functions of RSD1 and OsSDD1 in rice stomatal development
OsSDD1	Os03g0143100	LOC_Os03g04950	cell division	RSD1 Is Essential for Stomatal Patterning and Files in Rice.	OsSDD1 and RSD1 are both required for inhibiting ectopic asymmetric cell divisions (ACDs) and clustered stomata
OsSDD1	Os03g0143100	LOC_Os03g04950	stomatal	RSD1 Is Essential for Stomatal Patterning and Files in Rice.	This study characterized the functions of RSD1 and OsSDD1 in rice stomatal development
OsSDD1	Os03g0143100	LOC_Os03g04950	stomata	RSD1 Is Essential for Stomatal Patterning and Files in Rice.	Through the construction of OsSDD1 deletion mutants by CRISPR-Cas9, we found that, similar to rsd1 mutants, the ossdd1 mutants have clustered stomata and extra small cells adjacent to the stomata
OsSDD1	Os03g0143100	LOC_Os03g04950	stomata	RSD1 Is Essential for Stomatal Patterning and Files in Rice.	OsSDD1 and RSD1 are both required for inhibiting ectopic asymmetric cell divisions (ACDs) and clustered stomata
OsSDD1	Os03g0143100	LOC_Os03g04950	stomatal development	RSD1 Is Essential for Stomatal Patterning and Files in Rice.	This study characterized the functions of RSD1 and OsSDD1 in rice stomatal development
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	leaf	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Transgenic plants overexpressing OsSDG721 showed saline-alkaline stress-tolerant phenotypes, along with increased leaf angle, advanced heading and ripening dates
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	leaf	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	By contrast, ossdg721 loss-of-function mutants showed increased sensitivity to saline-alkaline stress characterized by decreased survival rates and reduction in plant height, grain size, grain weight and leaf angle
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	grain	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	By contrast, ossdg721 loss-of-function mutants showed increased sensitivity to saline-alkaline stress characterized by decreased survival rates and reduction in plant height, grain size, grain weight and leaf angle
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	alkaline stress	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Transgenic plants overexpressing OsSDG721 showed saline-alkaline stress-tolerant phenotypes, along with increased leaf angle, advanced heading and ripening dates
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	alkaline stress	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	By contrast, ossdg721 loss-of-function mutants showed increased sensitivity to saline-alkaline stress characterized by decreased survival rates and reduction in plant height, grain size, grain weight and leaf angle
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	alkaline stress	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Furthermore, we showed that OsSDG721 binds to and deposits the H3K4me3 mark in the promoter and coding region of OsHKT1;5, thereby upregulating OsHKT1;5 expression under saline-alkaline stress
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	alkaline stress	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Overall, by generating Kitaake activation-tagging pools, we established that the H3K4 methyltransferase OsSDG721 enhances saline-alkaline stress tolerance in rice
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	salt	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	RNA sequencing (RNA-seq) analysis of wild-type Kitaake and ossdg721 mutants indicated that OsSDG721 positively regulates the expression level of HIGH-AFFINITY POTASSIUM (K+ ) TRANSPORTER1;5 (OsHKT1;5), which encodes a Na+ -selective transporter that maintains K+ /Na+ homeostasis under salt stress
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	tolerance	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Overall, by generating Kitaake activation-tagging pools, we established that the H3K4 methyltransferase OsSDG721 enhances saline-alkaline stress tolerance in rice
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	potassium	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	RNA sequencing (RNA-seq) analysis of wild-type Kitaake and ossdg721 mutants indicated that OsSDG721 positively regulates the expression level of HIGH-AFFINITY POTASSIUM (K+ ) TRANSPORTER1;5 (OsHKT1;5), which encodes a Na+ -selective transporter that maintains K+ /Na+ homeostasis under salt stress
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	grain size	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	By contrast, ossdg721 loss-of-function mutants showed increased sensitivity to saline-alkaline stress characterized by decreased survival rates and reduction in plant height, grain size, grain weight and leaf angle
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	salt stress	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	RNA sequencing (RNA-seq) analysis of wild-type Kitaake and ossdg721 mutants indicated that OsSDG721 positively regulates the expression level of HIGH-AFFINITY POTASSIUM (K+ ) TRANSPORTER1;5 (OsHKT1;5), which encodes a Na+ -selective transporter that maintains K+ /Na+ homeostasis under salt stress
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	stress	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	By contrast, ossdg721 loss-of-function mutants showed increased sensitivity to saline-alkaline stress characterized by decreased survival rates and reduction in plant height, grain size, grain weight and leaf angle
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	stress	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	RNA sequencing (RNA-seq) analysis of wild-type Kitaake and ossdg721 mutants indicated that OsSDG721 positively regulates the expression level of HIGH-AFFINITY POTASSIUM (K+ ) TRANSPORTER1;5 (OsHKT1;5), which encodes a Na+ -selective transporter that maintains K+ /Na+ homeostasis under salt stress
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	stress	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Furthermore, we showed that OsSDG721 binds to and deposits the H3K4me3 mark in the promoter and coding region of OsHKT1;5, thereby upregulating OsHKT1;5 expression under saline-alkaline stress
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	stress	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Overall, by generating Kitaake activation-tagging pools, we established that the H3K4 methyltransferase OsSDG721 enhances saline-alkaline stress tolerance in rice
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	homeostasis	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	RNA sequencing (RNA-seq) analysis of wild-type Kitaake and ossdg721 mutants indicated that OsSDG721 positively regulates the expression level of HIGH-AFFINITY POTASSIUM (K+ ) TRANSPORTER1;5 (OsHKT1;5), which encodes a Na+ -selective transporter that maintains K+ /Na+ homeostasis under salt stress
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	transporter	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	RNA sequencing (RNA-seq) analysis of wild-type Kitaake and ossdg721 mutants indicated that OsSDG721 positively regulates the expression level of HIGH-AFFINITY POTASSIUM (K+ ) TRANSPORTER1;5 (OsHKT1;5), which encodes a Na+ -selective transporter that maintains K+ /Na+ homeostasis under salt stress
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	plant height	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	By contrast, ossdg721 loss-of-function mutants showed increased sensitivity to saline-alkaline stress characterized by decreased survival rates and reduction in plant height, grain size, grain weight and leaf angle
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	methyltransferase	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Overall, by generating Kitaake activation-tagging pools, we established that the H3K4 methyltransferase OsSDG721 enhances saline-alkaline stress tolerance in rice
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	grain weight	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	By contrast, ossdg721 loss-of-function mutants showed increased sensitivity to saline-alkaline stress characterized by decreased survival rates and reduction in plant height, grain size, grain weight and leaf angle
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	stress tolerance	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Overall, by generating Kitaake activation-tagging pools, we established that the H3K4 methyltransferase OsSDG721 enhances saline-alkaline stress tolerance in rice
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	leaf angle	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	Transgenic plants overexpressing OsSDG721 showed saline-alkaline stress-tolerant phenotypes, along with increased leaf angle, advanced heading and ripening dates
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	leaf angle	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake	By contrast, ossdg721 loss-of-function mutants showed increased sensitivity to saline-alkaline stress characterized by decreased survival rates and reduction in plant height, grain size, grain weight and leaf angle
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	development	SDG721 and SDG705 are required for rice growth.	Here, we report that SDG721 (SET-domain group protein 721) and SDG705 are involved in regulating rice development
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	development	SDG721 and SDG705 are required for rice growth.	Together, these results suggest that SDG721 and SDG705 regulate H3K4 methylation, which is crucial for plant development in rice
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	plant development	SDG721 and SDG705 are required for rice growth.	Together, these results suggest that SDG721 and SDG705 regulate H3K4 methylation, which is crucial for plant development in rice
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	panicle	SDG721 and SDG705 are required for rice growth.	Loss of SDG721 and SDG705 function resulted in GA-deficient phenotypes, including semi-dwarfism, reduced cell length, and reduced panicle branching
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	ga	SDG721 and SDG705 are required for rice growth.	The transcripts levels and H3K4me3 levels of GA biosynthesis genes and GA signaling pathway genes were downregulated in the sdg721 sdg705 plants
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	branching	SDG721 and SDG705 are required for rice growth.	Loss of SDG721 and SDG705 function resulted in GA-deficient phenotypes, including semi-dwarfism, reduced cell length, and reduced panicle branching
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	GA	SDG721 and SDG705 are required for rice growth.	The transcripts levels and H3K4me3 levels of GA biosynthesis genes and GA signaling pathway genes were downregulated in the sdg721 sdg705 plants
OsSDG721|SDG721	Os01g0218800	LOC_Os01g11952	GA biosynthesis	SDG721 and SDG705 are required for rice growth.	The transcripts levels and H3K4me3 levels of GA biosynthesis genes and GA signaling pathway genes were downregulated in the sdg721 sdg705 plants
OsSDIR1	Os03g0272300	LOC_Os03g16570	drought tolerance	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice	Taking advantage of strategies in biochemistry, molecular cell biology and genetics, the RING-finger containing E3 ligase OsSDIR1 (Oryza sativa SALT-AND DROUGHT-INDUCED RING FINGER 1) was found to be a candidate drought tolerance gene for engineering of crop plants
OsSDIR1	Os03g0272300	LOC_Os03g16570	drought tolerance	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice	Upon drought treatment, the OsSDIR1-transgenic rice showed strong drought tolerance compared to control plants
OsSDIR1	Os03g0272300	LOC_Os03g16570	drought tolerance	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice
OsSDIR1	Os03g0272300	LOC_Os03g16570	drought	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice	Taking advantage of strategies in biochemistry, molecular cell biology and genetics, the RING-finger containing E3 ligase OsSDIR1 (Oryza sativa SALT-AND DROUGHT-INDUCED RING FINGER 1) was found to be a candidate drought tolerance gene for engineering of crop plants
OsSDIR1	Os03g0272300	LOC_Os03g16570	drought	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice	The expression of OsSDIR1 was detected in all tissues of rice and up-regulated by drought and NaCl, but not by ABA
OsSDIR1	Os03g0272300	LOC_Os03g16570	drought	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice	OsSDIR1 could complement the drought sensitive phenotype of the sdir1 mutant and overexpressing transgenic Arabidopsis were more sensitive to ABA, indicating that the OsSDIR1 gene is a functional ortholog of SDIR1
OsSDIR1	Os03g0272300	LOC_Os03g16570	drought	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice	Upon drought treatment, the OsSDIR1-transgenic rice showed strong drought tolerance compared to control plants
OsSDIR1	Os03g0272300	LOC_Os03g16570	drought	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice
OsSDIR1	Os03g0272300	LOC_Os03g16570	salt	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice	Taking advantage of strategies in biochemistry, molecular cell biology and genetics, the RING-finger containing E3 ligase OsSDIR1 (Oryza sativa SALT-AND DROUGHT-INDUCED RING FINGER 1) was found to be a candidate drought tolerance gene for engineering of crop plants
OsSDR	Os07g0685800	LOC_Os07g48640	ABA	Methyl jasmonate reduces grain yield by mediating stress signals to alter spikelet development in rice	Two genes, OsJMT1 and OsSDR (for short-chain alcohol dehydrogenase), are involved in MeJA and ABA biosynthesis, respectively, in rice (Oryza sativa)
OsSec18	Os05g0519400	LOC_Os05g44310	vacuolar morphology	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in  rice endosperm cell	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in  rice endosperm cell
OsSec18	Os05g0519400	LOC_Os05g44310	endosperm	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in  rice endosperm cell	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in  rice endosperm cell
OsSec18	Os05g0519400	LOC_Os05g44310	height	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	Overexpression of OsSec18 in rice decreased the plant height and 1000-grain weight and altered the morphology of the protein bodies
OsSec18	Os05g0519400	LOC_Os05g44310	endosperm	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.
OsSec18	Os05g0519400	LOC_Os05g44310	endosperm	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	Further examination revealed that OsSec18 presented as a 290-kDa complex in rice endosperm cells
OsSec18	Os05g0519400	LOC_Os05g44310	endosperm	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	Moreover, Os60sP0 was identified a component of this complex, demonstrating that the OsSec18 complex contains another complex of P0(P1-P2)2 in rice endosperm cells
OsSec18	Os05g0519400	LOC_Os05g44310	endosperm	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	Our results revealed that the OsSec18 regulates vacuolar morphology in both yeast and rice endosperm cell and the OsSec18 interacts with P0(P1-P2)2 complex in rice endosperm cell
OsSec18	Os05g0519400	LOC_Os05g44310	grain weight	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	Overexpression of OsSec18 in rice decreased the plant height and 1000-grain weight and altered the morphology of the protein bodies
OsSec18	Os05g0519400	LOC_Os05g44310	vacuolar morphology	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.
OsSec18	Os05g0519400	LOC_Os05g44310	vacuolar morphology	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	Our results revealed that the OsSec18 regulates vacuolar morphology in both yeast and rice endosperm cell and the OsSec18 interacts with P0(P1-P2)2 complex in rice endosperm cell
OsSEC24	Os02g0809500	LOC_Os02g56500	tolerance	OsSEC24, a functional SEC24-like protein in rice, improves tolerance to iron deficiency and high pH by enhancing H(+) secretion mediated by PM-H(+)-ATPase.	To explore how OsSEC24 confers tolerance to iron deficiency, we utilized transgenic tobacco, rice and rice protoplasts
OsSEC24	Os02g0809500	LOC_Os02g56500	iron	OsSEC24, a functional SEC24-like protein in rice, improves tolerance to iron deficiency and high pH by enhancing H(+) secretion mediated by PM-H(+)-ATPase.	To explore how OsSEC24 confers tolerance to iron deficiency, we utilized transgenic tobacco, rice and rice protoplasts
OsSEC24	Os02g0809500	LOC_Os02g56500	iron	OsSEC24, a functional SEC24-like protein in rice, improves tolerance to iron deficiency and high pH by enhancing H(+) secretion mediated by PM-H(+)-ATPase.	H(+) flux measurements using Non-invasive Micro-test Technology (NMT) indicated that the transgenic OsSEC24 tobacco and rice enhanced H(+) efflux under iron deficiency
OsSEC24	Os02g0809500	LOC_Os02g56500	iron	OsSEC24, a functional SEC24-like protein in rice, improves tolerance to iron deficiency and high pH by enhancing H(+) secretion mediated by PM-H(+)-ATPase.	Together, OsSEC24 vesicles, along with PM-H(+)-ATPases stimulate roots formation under iron deficiency by enhancing rhizosphere acidification
OsSEC24	Os02g0809500	LOC_Os02g56500	plasma membrane	OsSEC24, a functional SEC24-like protein in rice, improves tolerance to iron deficiency and high pH by enhancing H(+) secretion mediated by PM-H(+)-ATPase.	Conversely, the application of plasma membrane PM-H(+)-ATPase inhibitor vanadate elucidated that H(+) secretion increased by OsSEC24 was mediated by PM-H(+)-ATPase
OsSEC3A	Os03g0625700	LOC_Os03g42750	resistance	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	The Ossec3a mutant exhibited enhanced defense responses, as shown by up-regulated transcript levels of pathogenesis- and salicylic acid synthesis-related genes, increased levels of salicylic acid, and enhanced resistance to the fungal pathogen Magnaporthe oryzae
OsSEC3A	Os03g0625700	LOC_Os03g42750	defense	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.
OsSEC3A	Os03g0625700	LOC_Os03g42750	defense	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	The Ossec3a mutant exhibited enhanced defense responses, as shown by up-regulated transcript levels of pathogenesis- and salicylic acid synthesis-related genes, increased levels of salicylic acid, and enhanced resistance to the fungal pathogen Magnaporthe oryzae
OsSEC3A	Os03g0625700	LOC_Os03g42750	defense response	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.
OsSEC3A	Os03g0625700	LOC_Os03g42750	defense response	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	The Ossec3a mutant exhibited enhanced defense responses, as shown by up-regulated transcript levels of pathogenesis- and salicylic acid synthesis-related genes, increased levels of salicylic acid, and enhanced resistance to the fungal pathogen Magnaporthe oryzae
OsSEC3A	Os03g0625700	LOC_Os03g42750	salicylic acid	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.
OsSEC3A	Os03g0625700	LOC_Os03g42750	salicylic acid	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	The Ossec3a mutant exhibited enhanced defense responses, as shown by up-regulated transcript levels of pathogenesis- and salicylic acid synthesis-related genes, increased levels of salicylic acid, and enhanced resistance to the fungal pathogen Magnaporthe oryzae
OsSEC3A	Os03g0625700	LOC_Os03g42750	blast	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	In addition, OsSEC3A interacted with rice SNAP25-type t-SNARE protein OsSNAP32, which is involved in rice blast resistance, via the C-terminus and bound to phosphatidylinositol lipids, particularly phosphatidylinositol-3-phosphate, through its N-terminus
OsSEC3A	Os03g0625700	LOC_Os03g42750	magnaporthe oryzae	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	The Ossec3a mutant exhibited enhanced defense responses, as shown by up-regulated transcript levels of pathogenesis- and salicylic acid synthesis-related genes, increased levels of salicylic acid, and enhanced resistance to the fungal pathogen Magnaporthe oryzae
OsSEC3A	Os03g0625700	LOC_Os03g42750	dwarf	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	Disruption of OsSEC3A by CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9) caused dwarf stature and a lesion-mimic phenotype
OsSEC3A	Os03g0625700	LOC_Os03g42750	plasma membrane	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	Subcellular localization analysis demonstrated that OsSEC3A has a punctate distribution with the plasma membrane
OsSEC3A	Os03g0625700	LOC_Os03g42750	blast resistance	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	In addition, OsSEC3A interacted with rice SNAP25-type t-SNARE protein OsSNAP32, which is involved in rice blast resistance, via the C-terminus and bound to phosphatidylinositol lipids, particularly phosphatidylinositol-3-phosphate, through its N-terminus
OsSEC3A	Os03g0625700	LOC_Os03g42750	pathogen	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	The Ossec3a mutant exhibited enhanced defense responses, as shown by up-regulated transcript levels of pathogenesis- and salicylic acid synthesis-related genes, increased levels of salicylic acid, and enhanced resistance to the fungal pathogen Magnaporthe oryzae
OsSEH1	Os01g0620100	LOC_Os01g43250	stress	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 In this study, we revealed that nucleoporin-coding gene OsSEH1 was a positive regulator of cold stress in rice
OsSEH1	Os01g0620100	LOC_Os01g43250	stress	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 Physiological assays showed that the activity of antioxidant enzymes showed a significant difference between osseh1 knock-out lines and wild type under cold stress
OsSEH1	Os01g0620100	LOC_Os01g43250	stress	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 Metabolome analysis revealed that the contents of large-scale flavonoids serving as ROS scavengers were lower in osseh1 mutants compared with wild type under cold stress
OsSEH1	Os01g0620100	LOC_Os01g43250	defense response	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 Transcriptome analysis indicated that the DEGs between osseh1 knock-out lines and wild type plants were enriched in defense response, regulation of hormone levels and oxidation-reduction process
OsSEH1	Os01g0620100	LOC_Os01g43250	defense	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 Transcriptome analysis indicated that the DEGs between osseh1 knock-out lines and wild type plants were enriched in defense response, regulation of hormone levels and oxidation-reduction process
OsSEH1	Os01g0620100	LOC_Os01g43250	tolerance	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 In addition, Exogenous ABA application assays indicated that osseh1 lines had hypersensitive phenotypes compared with wild type plants, suggesting that OsSEH1 may mediate cold tolerance by regulating ABA levels
OsSEH1	Os01g0620100	LOC_Os01g43250	cold tolerance	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.
OsSEH1	Os01g0620100	LOC_Os01g43250	cold tolerance	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 In addition, Exogenous ABA application assays indicated that osseh1 lines had hypersensitive phenotypes compared with wild type plants, suggesting that OsSEH1 may mediate cold tolerance by regulating ABA levels
OsSEH1	Os01g0620100	LOC_Os01g43250	cold stress	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 In this study, we revealed that nucleoporin-coding gene OsSEH1 was a positive regulator of cold stress in rice
OsSEH1	Os01g0620100	LOC_Os01g43250	cold stress	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 Physiological assays showed that the activity of antioxidant enzymes showed a significant difference between osseh1 knock-out lines and wild type under cold stress
OsSEH1	Os01g0620100	LOC_Os01g43250	cold stress	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 Metabolome analysis revealed that the contents of large-scale flavonoids serving as ROS scavengers were lower in osseh1 mutants compared with wild type under cold stress
OsSEH1	Os01g0620100	LOC_Os01g43250	ABA	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 In addition, Exogenous ABA application assays indicated that osseh1 lines had hypersensitive phenotypes compared with wild type plants, suggesting that OsSEH1 may mediate cold tolerance by regulating ABA levels
OsSEH1	Os01g0620100	LOC_Os01g43250	cold	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.
OsSEH1	Os01g0620100	LOC_Os01g43250	cold	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 In this study, we revealed that nucleoporin-coding gene OsSEH1 was a positive regulator of cold stress in rice
OsSEH1	Os01g0620100	LOC_Os01g43250	cold	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 Physiological assays showed that the activity of antioxidant enzymes showed a significant difference between osseh1 knock-out lines and wild type under cold stress
OsSEH1	Os01g0620100	LOC_Os01g43250	cold	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 Metabolome analysis revealed that the contents of large-scale flavonoids serving as ROS scavengers were lower in osseh1 mutants compared with wild type under cold stress
OsSEH1	Os01g0620100	LOC_Os01g43250	cold	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 In addition, Exogenous ABA application assays indicated that osseh1 lines had hypersensitive phenotypes compared with wild type plants, suggesting that OsSEH1 may mediate cold tolerance by regulating ABA levels
OsSEH1	Os01g0620100	LOC_Os01g43250	flavonoid	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 Integration of transcriptomic and metabolic profiling revealed that OsSEH1 plays a role in the oxidation-reduction process by coordinately regulating genes expression and metabolite accumulation involved in phenylpropanoid and flavonoid biosynthetic pathway
OsSEH1	Os01g0620100	LOC_Os01g43250	 ABA 	Multi-omics approach reveals the contribution of OsSEH1 to rice cold tolerance.	 In addition, Exogenous ABA application assays indicated that osseh1 lines had hypersensitive phenotypes compared with wild type plants, suggesting that OsSEH1 may mediate cold tolerance by regulating ABA levels
OsSEND-1|OsSEND1	Os08g0101600	LOC_Os08g01130	meristem	OsSEND-1: a new RAD2 nuclease family member in higher plants	Northern blotting and in situ hybridization analyses demonstrated preferential expression of OsSEND-1 mRNA in proliferating tissues such as meristem
OsSEND-1|OsSEND1	Os08g0101600	LOC_Os08g01130	development	Resolvase OsGEN1 Mediates DNA Repair by Homologous Recombination.	In contrast, depletion of OsSEND1 had no effects on plant development and did not enhance osgen1 defects
OsSEND-1|OsSEND1	Os08g0101600	LOC_Os08g01130	plant development	Resolvase OsGEN1 Mediates DNA Repair by Homologous Recombination.	In contrast, depletion of OsSEND1 had no effects on plant development and did not enhance osgen1 defects
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	temperature	Two rice receptor-like kinases maintain male fertility under changing temperatures.	Here we report the identification of two rice leucine-rich repeat receptor-like kinases, Thermo-Sensitive Genic Male Sterile 10 (TMS10) and its close homolog TMS10-Like (TMS10L), which redundantly function in the maintenance of the tapetal cell layer and microspore/pollen viability under normal temperature conditions with TMS10 playing an essential role in higher temperatures (namely, 28 C)
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	temperature	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	pollen	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	sterility	Two rice receptor-like kinases maintain male fertility under changing temperatures.	tms10 displays male sterility under high temperatures but male fertility under low temperatures, and the tms10 tms10l double mutant shows complete male sterility under both high and low temperatures
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	development	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	development	Two rice receptor-like kinases maintain male fertility under changing temperatures.	TMS10 may be used as a genetic resource for the development of hybrid seed production systems in crops
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	seed	Two rice receptor-like kinases maintain male fertility under changing temperatures.	TMS10 may be used as a genetic resource for the development of hybrid seed production systems in crops
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	sterile	Two rice receptor-like kinases maintain male fertility under changing temperatures.	Here we report the identification of two rice leucine-rich repeat receptor-like kinases, Thermo-Sensitive Genic Male Sterile 10 (TMS10) and its close homolog TMS10-Like (TMS10L), which redundantly function in the maintenance of the tapetal cell layer and microspore/pollen viability under normal temperature conditions with TMS10 playing an essential role in higher temperatures (namely, 28 C)
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	fertility	Two rice receptor-like kinases maintain male fertility under changing temperatures.	tms10 displays male sterility under high temperatures but male fertility under low temperatures, and the tms10 tms10l double mutant shows complete male sterility under both high and low temperatures
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	fertility	Two rice receptor-like kinases maintain male fertility under changing temperatures.	Biochemical and genetic assays indicate that the kinase activity conferred by the intracellular domain of TMS10 is essential for tapetal degeneration and male fertility under high temperatures
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	tapetal	Two rice receptor-like kinases maintain male fertility under changing temperatures.	Here we report the identification of two rice leucine-rich repeat receptor-like kinases, Thermo-Sensitive Genic Male Sterile 10 (TMS10) and its close homolog TMS10-Like (TMS10L), which redundantly function in the maintenance of the tapetal cell layer and microspore/pollen viability under normal temperature conditions with TMS10 playing an essential role in higher temperatures (namely, 28 C)
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	tapetal	Two rice receptor-like kinases maintain male fertility under changing temperatures.	Biochemical and genetic assays indicate that the kinase activity conferred by the intracellular domain of TMS10 is essential for tapetal degeneration and male fertility under high temperatures
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	tapetal	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	Kinase	Two rice receptor-like kinases maintain male fertility under changing temperatures.	Biochemical and genetic assays indicate that the kinase activity conferred by the intracellular domain of TMS10 is essential for tapetal degeneration and male fertility under high temperatures
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	pollen development	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
OsSERK4|TMS10	Os02g0283800	LOC_Os02g18320	male sterility	Two rice receptor-like kinases maintain male fertility under changing temperatures.	tms10 displays male sterility under high temperatures but male fertility under low temperatures, and the tms10 tms10l double mutant shows complete male sterility under both high and low temperatures
OsSET22|SDG728|OsSUVH8	Os05g0490700	LOC_Os05g41172	seed	Rice SUVH histone methyltransferase genes display specific functions in chromatin modification and retrotransposon repression	Down-regulation of a rice Su(var)3-9 homolog (SUVH), namely SDG728, decreased H3K9 methylation and altered seed morphology
OsSEX4	Os03g0107800	LOC_Os03g01750	leaf	Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.	Ectopic expression of OsSEX4 complementary DNA complemented the leaf starch-excess phenotype of the Arabidopsis sex4-4 mutant
OsSEX4	Os03g0107800	LOC_Os03g01750	starch	Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.	Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.
OsSEX4	Os03g0107800	LOC_Os03g01750	starch	Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.	Starch accumulation was higher in OsSEX4-knockdown suspension-cultured cells, leaves, and rice straw compared with the wild type, suggesting that OsSEX4 plays an important role in degradation of transitory starch
OsSEX4	Os03g0107800	LOC_Os03g01750	bioethanol	Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.	Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.
OsSEX4	Os03g0107800	LOC_Os03g01750	bioethanol production	Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.	Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.
OsSFL1	Os04g0166600	LOC_Os04g08450	flowering time	Rice homolog of Sin3-associated polypeptide 30, OsSFL1, mediates histone deacetylation to regulate flowering time during short days	Consistently, we also verified that ossfl1 T line delayed flowering time under SDs (about 17 days) compared with that of wild type DJ plants (Figure 1d), suggesting that OsSFL1 is an important player to regulate flowering time in rice.
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	abiotic stress	OsSFR6 is a functional rice orthologue of SENSITIVE TO FREEZING-6 and can act as a regulator of COR gene expression, osmotic stress and freezing tolerance in Arabidopsis	OsSFR6 is an orthologue of AtSFR6, and thus a target for future manipulation to improve tolerance to osmotic and other abiotic stresses
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	abiotic stress	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice 	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice 
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	abiotic stress	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice 	 We used virus-induced gene silencing (VIGS) to study the functions of two genes, namely OsMED16 and OsMED25 in response to biotic and abiotic stresses in rice
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	biotic stress	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice 	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice 
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	biotic stress	Functional Analysis of OsMED16 and OsMED25 in Response to Biotic and Abiotic Stresses in Rice 	 We used virus-induced gene silencing (VIGS) to study the functions of two genes, namely OsMED16 and OsMED25 in response to biotic and abiotic stresses in rice
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	defense	MEDIATOR SUBUNIT 16 negatively regulates rice immunity by modulating PATHOGENESIS RELATED 3 activity.	 Strikingly, OsMED16 exhibited an opposite function in plant defense relative to that of Arabidopsis (Arabidopsis thaliana) AtMED16, most likely because of two amino acid substitutions between the monocot and dicot MED16s tested
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	immunity	MEDIATOR SUBUNIT 16 negatively regulates rice immunity by modulating PATHOGENESIS RELATED 3 activity.	 Collectively, our findings suggest that OsMED16 negatively regulates cell death and immunity in rice, probably via the OsPR3-mediated chitin signaling pathway
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	cell death	MEDIATOR SUBUNIT 16 negatively regulates rice immunity by modulating PATHOGENESIS RELATED 3 activity.	 Collectively, our findings suggest that OsMED16 negatively regulates cell death and immunity in rice, probably via the OsPR3-mediated chitin signaling pathway
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	lesion	MEDIATOR SUBUNIT 16 negatively regulates rice immunity by modulating PATHOGENESIS RELATED 3 activity.	 Furthermore, the ospr3 osmed16 double mutants did not exhibit the lesion mimic phenotype of the spl38 mutant
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	lesion mimic	MEDIATOR SUBUNIT 16 negatively regulates rice immunity by modulating PATHOGENESIS RELATED 3 activity.	 Furthermore, the ospr3 osmed16 double mutants did not exhibit the lesion mimic phenotype of the spl38 mutant
OsSFR6|OsMED16	Os10g0498700	LOC_Os10g35560	chitin signaling	MEDIATOR SUBUNIT 16 negatively regulates rice immunity by modulating PATHOGENESIS RELATED 3 activity.	 Collectively, our findings suggest that OsMED16 negatively regulates cell death and immunity in rice, probably via the OsPR3-mediated chitin signaling pathway
OsSG1	Os07g0462000	LOC_Os07g27790	chlorophyll	New alleles for chlorophyll content and stay-green traits revealed by a genome wide association study in rice (Oryza sativa)	According to these analyses, we suggest that LOC_Os07g27790, named as OsSG1, is an important candidate gene controlling multiple chlorophyll-related traits, including CC, SG and ACC.
OsSGL	Os02g0134200	LOC_Os02g04130	growth	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Together, our results suggest that OsSGL may regulate stress-tolerance and cell growth by acting via a cytokinin signaling pathway
OsSGL	Os02g0134200	LOC_Os02g04130	grain	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Overexpression of OsSGL significantly altered certain development processes greatly and positively affecting an array of traits in transgenic rice plants, including increased grain length, grain weight and grain number per panicle, resulting in a significant increase in yield
OsSGL	Os02g0134200	LOC_Os02g04130	grain	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Microscopical analysis showed that the enhanced OsSGL expression promoted cell division and grain filling
OsSGL	Os02g0134200	LOC_Os02g04130	development	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Overexpression of OsSGL significantly altered certain development processes greatly and positively affecting an array of traits in transgenic rice plants, including increased grain length, grain weight and grain number per panicle, resulting in a significant increase in yield
OsSGL	Os02g0134200	LOC_Os02g04130	grain number	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Overexpression of OsSGL significantly altered certain development processes greatly and positively affecting an array of traits in transgenic rice plants, including increased grain length, grain weight and grain number per panicle, resulting in a significant increase in yield
OsSGL	Os02g0134200	LOC_Os02g04130	grain length	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Overexpression of OsSGL significantly altered certain development processes greatly and positively affecting an array of traits in transgenic rice plants, including increased grain length, grain weight and grain number per panicle, resulting in a significant increase in yield
OsSGL	Os02g0134200	LOC_Os02g04130	yield	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Overexpression of OsSGL significantly altered certain development processes greatly and positively affecting an array of traits in transgenic rice plants, including increased grain length, grain weight and grain number per panicle, resulting in a significant increase in yield
OsSGL	Os02g0134200	LOC_Os02g04130	cell division	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Microscopical analysis showed that the enhanced OsSGL expression promoted cell division and grain filling
OsSGL	Os02g0134200	LOC_Os02g04130	cytokinin	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Together, our results suggest that OsSGL may regulate stress-tolerance and cell growth by acting via a cytokinin signaling pathway
OsSGL	Os02g0134200	LOC_Os02g04130	grain filling	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Microscopical analysis showed that the enhanced OsSGL expression promoted cell division and grain filling
OsSGL	Os02g0134200	LOC_Os02g04130	grain weight	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Overexpression of OsSGL significantly altered certain development processes greatly and positively affecting an array of traits in transgenic rice plants, including increased grain length, grain weight and grain number per panicle, resulting in a significant increase in yield
OsSGL	Os02g0134200	LOC_Os02g04130	root	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	These results suggest that the mechanism by which OsSGL confers enhanced drought tolerance is due to the modulated expression of stress-responsive genes, higher accumulations of osmolytes, and enlarged root systems
OsSGL	Os02g0134200	LOC_Os02g04130	grain	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	We investigated OsSGL (Oryza sativa Stress tolerance and Grain Length), a novel DUF1645 domain-containing protein from rice
OsSGL	Os02g0134200	LOC_Os02g04130	grain length	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	We investigated OsSGL (Oryza sativa Stress tolerance and Grain Length), a novel DUF1645 domain-containing protein from rice
OsSGL	Os02g0134200	LOC_Os02g04130	drought	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	Transgenic plants over-expressing or hetero-expressing OsSGL conferred significantly improved drought tolerance in transgenic rice and Arabidopsis thaliana, respectively
OsSGL	Os02g0134200	LOC_Os02g04130	drought	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	These results suggest that the mechanism by which OsSGL confers enhanced drought tolerance is due to the modulated expression of stress-responsive genes, higher accumulations of osmolytes, and enlarged root systems
OsSGL	Os02g0134200	LOC_Os02g04130	tolerance	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	We investigated OsSGL (Oryza sativa Stress tolerance and Grain Length), a novel DUF1645 domain-containing protein from rice
OsSGL	Os02g0134200	LOC_Os02g04130	tolerance	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	Transgenic plants over-expressing or hetero-expressing OsSGL conferred significantly improved drought tolerance in transgenic rice and Arabidopsis thaliana, respectively
OsSGL	Os02g0134200	LOC_Os02g04130	tolerance	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	These results suggest that the mechanism by which OsSGL confers enhanced drought tolerance is due to the modulated expression of stress-responsive genes, higher accumulations of osmolytes, and enlarged root systems
OsSGL	Os02g0134200	LOC_Os02g04130	drought tolerance	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	Transgenic plants over-expressing or hetero-expressing OsSGL conferred significantly improved drought tolerance in transgenic rice and Arabidopsis thaliana, respectively
OsSGL	Os02g0134200	LOC_Os02g04130	drought tolerance	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	These results suggest that the mechanism by which OsSGL confers enhanced drought tolerance is due to the modulated expression of stress-responsive genes, higher accumulations of osmolytes, and enlarged root systems
OsSGL	Os02g0134200	LOC_Os02g04130	stress	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	We investigated OsSGL (Oryza sativa Stress tolerance and Grain Length), a novel DUF1645 domain-containing protein from rice
OsSGL	Os02g0134200	LOC_Os02g04130	nucleus	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	OsSGL was up-regulated by multiple stresses and localized to the nucleus
OsSGL	Os02g0134200	LOC_Os02g04130	stress tolerance	OsSGL, a Novel DUF1645 Domain-Containing Protein, Confers Enhanced Drought Tolerance in Transgenic Rice and Arabidopsis.	We investigated OsSGL (Oryza sativa Stress tolerance and Grain Length), a novel DUF1645 domain-containing protein from rice
OsSGL	Os02g0134200	LOC_Os02g04130	transcription factor	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.
OsSGL	Os02g0134200	LOC_Os02g04130	grain	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.
OsSGL	Os02g0134200	LOC_Os02g04130	grain	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Therefore, our findings demonstrate that accurate control of OsSGL homeostasis is essential for starch synthesis and grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	grain	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 In addition, we revealed the molecular mechanism of OsSGL in regulating starch biosynthesis-related genes, which are required for grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	starch	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.
OsSGL	Os02g0134200	LOC_Os02g04130	starch	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Overexpression of OsSGL reduced total starch and amylose content in the endosperm compared with the wild type
OsSGL	Os02g0134200	LOC_Os02g04130	starch	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Chromatin immunoprecipitation sequencing and RNA-seq analyses indicated that OsSGL targets the transcriptional activity of several starch and sucrose metabolism genes
OsSGL	Os02g0134200	LOC_Os02g04130	starch	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Unexpectedly, our results also show that knock down and mutation of OsSGL disrupts the starch biosynthetic pathway, causing lower starch and amylose content
OsSGL	Os02g0134200	LOC_Os02g04130	starch	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Therefore, our findings demonstrate that accurate control of OsSGL homeostasis is essential for starch synthesis and grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	starch	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 In addition, we revealed the molecular mechanism of OsSGL in regulating starch biosynthesis-related genes, which are required for grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	quality	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.
OsSGL	Os02g0134200	LOC_Os02g04130	quality	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Therefore, our findings demonstrate that accurate control of OsSGL homeostasis is essential for starch synthesis and grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	quality	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 In addition, we revealed the molecular mechanism of OsSGL in regulating starch biosynthesis-related genes, which are required for grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	homeostasis	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Therefore, our findings demonstrate that accurate control of OsSGL homeostasis is essential for starch synthesis and grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	endosperm	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Overexpression of OsSGL reduced total starch and amylose content in the endosperm compared with the wild type
OsSGL	Os02g0134200	LOC_Os02g04130	endosperm	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 In addition, ChIP-qPCR, yeast one-hybrid, EMSA and dual-luciferase assays demonstrated that OsSGL directly inhibits the expression of SUCROSE SYNTHASE 1 (OsSUS1) in the endosperm
OsSGL	Os02g0134200	LOC_Os02g04130	sucrose	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Chromatin immunoprecipitation sequencing and RNA-seq analyses indicated that OsSGL targets the transcriptional activity of several starch and sucrose metabolism genes
OsSGL	Os02g0134200	LOC_Os02g04130	sucrose	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 In addition, ChIP-qPCR, yeast one-hybrid, EMSA and dual-luciferase assays demonstrated that OsSGL directly inhibits the expression of SUCROSE SYNTHASE 1 (OsSUS1) in the endosperm
OsSGL	Os02g0134200	LOC_Os02g04130	grain quality	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.
OsSGL	Os02g0134200	LOC_Os02g04130	grain quality	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Therefore, our findings demonstrate that accurate control of OsSGL homeostasis is essential for starch synthesis and grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	grain quality	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 In addition, we revealed the molecular mechanism of OsSGL in regulating starch biosynthesis-related genes, which are required for grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	starch biosynthesis	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 In addition, we revealed the molecular mechanism of OsSGL in regulating starch biosynthesis-related genes, which are required for grain quality
OsSGL	Os02g0134200	LOC_Os02g04130	amylose content	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Overexpression of OsSGL reduced total starch and amylose content in the endosperm compared with the wild type
OsSGL	Os02g0134200	LOC_Os02g04130	amylose content	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 Unexpectedly, our results also show that knock down and mutation of OsSGL disrupts the starch biosynthetic pathway, causing lower starch and amylose content
OsSGL	Os02g0134200	LOC_Os02g04130	sucrose synthase	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	 In addition, ChIP-qPCR, yeast one-hybrid, EMSA and dual-luciferase assays demonstrated that OsSGL directly inhibits the expression of SUCROSE SYNTHASE 1 (OsSUS1) in the endosperm
OsSGO1	Os02g0799100	LOC_Os02g55570	mitosis	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	During both mitosis and meiosis, OsSGO1 is recruited from nucleoli onto centromeres at the onset of prophase
OsSGO1	Os02g0799100	LOC_Os02g55570	mitosis	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	Moreover, the release of OsSGO1 from nucleoli is completely blocked in Ossgo1-1, which leads to the absence of OsSGO1 in centromeric regions after the onset of mitosis and meiosis
OsSGO1	Os02g0799100	LOC_Os02g55570	meiotic	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	Finally, we found that the centromeric localization of OsSGO1 depends on OsAM1, not other meiotic proteins such as OsREC8, PAIR2, OsMER3, or ZEP1
OsSGO1	Os02g0799100	LOC_Os02g55570	meiosis	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	During both mitosis and meiosis, OsSGO1 is recruited from nucleoli onto centromeres at the onset of prophase
OsSGO1	Os02g0799100	LOC_Os02g55570	meiosis	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	In the Tos17-insertional Ossgo1-1 mutant, centromeres of sister chromatids separate precociously from each other from metaphase I, which causes unequal chromosome segregation during meiosis II
OsSGO1	Os02g0799100	LOC_Os02g55570	meiosis	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	Moreover, the release of OsSGO1 from nucleoli is completely blocked in Ossgo1-1, which leads to the absence of OsSGO1 in centromeric regions after the onset of mitosis and meiosis
OsSGO1	Os02g0799100	LOC_Os02g55570	meiosis	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis
OsSGT1	Os01g0624500	LOC_Os01g43540	shoot apical meristem	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex	Two-hybrid and pull-down analyses indicated that OsRad6 binds to OsSgt1, and transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed only in the proliferating tissues such as the shoot apical meristem, suggesting that their expression is cell cycle-dependent
OsSGT1	Os01g0624500	LOC_Os01g43540	cell cycle	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex	Two-hybrid and pull-down analyses indicated that OsRad6 binds to OsSgt1, and transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed only in the proliferating tissues such as the shoot apical meristem, suggesting that their expression is cell cycle-dependent
OsSGT1	Os01g0624500	LOC_Os01g43540	magnaporthe oryzae	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	OsRar1-OE and OsSGT1-OE plants also enhanced resistance to all four virulent blast fungal Magnaporthe oryzae races
OsSGT1	Os01g0624500	LOC_Os01g43540	shoot	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex	Two-hybrid and pull-down analyses indicated that OsRad6 binds to OsSgt1, and transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed only in the proliferating tissues such as the shoot apical meristem, suggesting that their expression is cell cycle-dependent
OsSGT1	Os01g0624500	LOC_Os01g43540	bacterial blight	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	Overexpression of OsRar1 and OsSGT1 in rice significantly increased basal resistance to a virulent bacterial blight Xanthomonas oryzae pv
OsSGT1	Os01g0624500	LOC_Os01g43540	blast	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	OsRar1-OE and OsSGT1-OE plants also enhanced resistance to all four virulent blast fungal Magnaporthe oryzae races
OsSGT1	Os01g0624500	LOC_Os01g43540	meristem	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex	Two-hybrid and pull-down analyses indicated that OsRad6 binds to OsSgt1, and transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed only in the proliferating tissues such as the shoot apical meristem, suggesting that their expression is cell cycle-dependent
OsSGT1	Os01g0624500	LOC_Os01g43540	auxin	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	Consistent with the hypothesis of the dominant negative regulation, we observed the reduced sensitivity to auxin of OsSGT1-GFP plants compared with the wild-type ones, and the curling-root phenotype in OsSGT1-OE plants
OsSGT1	Os01g0624500	LOC_Os01g43540	blight	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	Overexpression of OsRar1 and OsSGT1 in rice significantly increased basal resistance to a virulent bacterial blight Xanthomonas oryzae pv
OsSGT1	Os01g0624500	LOC_Os01g43540	disease resistance	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	These results collectively suggest that OsRar1 and OsSGT1 might be differentially required for rice basal disease resistance
OsSGT1	Os01g0624500	LOC_Os01g43540	disease resistance	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	Our current study also provides new insight into the roles of OsSGT1 in basal disease resistance
OsSGT1	Os01g0624500	LOC_Os01g43540	disease resistance	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance
OsSGT1	Os01g0624500	LOC_Os01g43540	disease	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	These results collectively suggest that OsRar1 and OsSGT1 might be differentially required for rice basal disease resistance
OsSGT1	Os01g0624500	LOC_Os01g43540	disease	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	Our current study also provides new insight into the roles of OsSGT1 in basal disease resistance
OsSGT1	Os01g0624500	LOC_Os01g43540	disease	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance
OsSGT1	Os01g0624500	LOC_Os01g43540	root	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance	Consistent with the hypothesis of the dominant negative regulation, we observed the reduced sensitivity to auxin of OsSGT1-GFP plants compared with the wild-type ones, and the curling-root phenotype in OsSGT1-OE plants
OsSGT1	Os09g0518200	LOC_Os09g34250	blast disease	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants	Furthermore, RNAi-mediated silencing of the OsSGT1 gene significantly reduced the probenazole-dependent development of resistance against blast disease, further supporting the suggestion that OsSGT1 is a key mediator of development of chemically induced disease resistance
OsSGT1	Os09g0518200	LOC_Os09g34250	salicylic acid	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants
OsSGT1	Os09g0518200	LOC_Os09g34250	blast	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants	Furthermore, RNAi-mediated silencing of the OsSGT1 gene significantly reduced the probenazole-dependent development of resistance against blast disease, further supporting the suggestion that OsSGT1 is a key mediator of development of chemically induced disease resistance
OsSGT1	Os09g0518200	LOC_Os09g34250	disease	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants	Furthermore, RNAi-mediated silencing of the OsSGT1 gene significantly reduced the probenazole-dependent development of resistance against blast disease, further supporting the suggestion that OsSGT1 is a key mediator of development of chemically induced disease resistance
OsSGT1	Os09g0518200	LOC_Os09g34250	disease	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants
OsSGT1	Os09g0518200	LOC_Os09g34250	sa	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants	Cloning and characterization of the most highly activated probenazole-responsive gene revealed that it encodes UDP-glucose:SA glucosyltransferase (OsSGT1), which catalyzes the conversion of free SA into SA O-beta-glucoside (SAG)
OsSGT1	Os09g0518200	LOC_Os09g34250	sa	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants	The OsSGT1 gene may contribute to the SA signaling mechanism by inducing up-regulation of SAG in rice plants
OsSGT1	Os09g0518200	LOC_Os09g34250	disease resistance	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants	Furthermore, RNAi-mediated silencing of the OsSGT1 gene significantly reduced the probenazole-dependent development of resistance against blast disease, further supporting the suggestion that OsSGT1 is a key mediator of development of chemically induced disease resistance
OsSGT1	Os09g0518200	LOC_Os09g34250	disease resistance	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants
OsSh1	Os03g0650000	LOC_Os03g44710	resistant	Parallel domestication of the Shattering1 genes in cereals	The function of the rice ortholog (OsSh1) was subsequently validated with a shattering-resistant mutant, and two maize orthologs (ZmSh1-1 and ZmSh1-5
OsSh1	Os03g0650000	LOC_Os03g44710	shattering	Parallel domestication of the Shattering1 genes in cereals	The function of the rice ortholog (OsSh1) was subsequently validated with a shattering-resistant mutant, and two maize orthologs (ZmSh1-1 and ZmSh1-5
OsSh1	Os03g0650000	LOC_Os03g44710	seed	Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing	Whole-genome mutation analysis of 'Minamiyutaka' newly identified a 13-bp deletion causing defective splicing in exon 3 of the OsSh1 gene which has previously been referred to as a candidate for controlling seed shattering
OsSh1	Os03g0650000	LOC_Os03g44710	seed	Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing	Nucleotide diversity analysis of OsSh1 in wild rice accessions and cultivars revealed that OsSh1 has been under strong selection during rice domestication, and a missense mutation might have contributed to the reduction of seed shattering from the wild progenitors to cultivated rice
OsSh1	Os03g0650000	LOC_Os03g44710	shattering	Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing	Whole-genome mutation analysis of 'Minamiyutaka' newly identified a 13-bp deletion causing defective splicing in exon 3 of the OsSh1 gene which has previously been referred to as a candidate for controlling seed shattering
OsSh1	Os03g0650000	LOC_Os03g44710	shattering	Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing	Nucleotide diversity analysis of OsSh1 in wild rice accessions and cultivars revealed that OsSh1 has been under strong selection during rice domestication, and a missense mutation might have contributed to the reduction of seed shattering from the wild progenitors to cultivated rice
OsSh1	Os03g0650000	LOC_Os03g44710	seed shattering	Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing	Whole-genome mutation analysis of 'Minamiyutaka' newly identified a 13-bp deletion causing defective splicing in exon 3 of the OsSh1 gene which has previously been referred to as a candidate for controlling seed shattering
OsSh1	Os03g0650000	LOC_Os03g44710	seed shattering	Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing	Nucleotide diversity analysis of OsSh1 in wild rice accessions and cultivars revealed that OsSh1 has been under strong selection during rice domestication, and a missense mutation might have contributed to the reduction of seed shattering from the wild progenitors to cultivated rice
OsSHI1	Os09g0531600	LOC_Os09g36160	transcription factor	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	Map-based cloning revealed that OsSHI1 encodes a plant-specific transcription factor of the SHORT INTERNODES (SHI) family with a characteristic family-specific IGGH domain and a conserved zinc-finger DNA binding domain
OsSHI1	Os09g0531600	LOC_Os09g36160	panicle	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	OsSHI1 is predominantly expressed in axillary buds and young panicle
OsSHI1	Os09g0531600	LOC_Os09g36160	panicle	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	Further, OsSHI1 represses the transcriptional activation activity of IPA1 by affecting its DNA binding activity towards the promoters of both OsTB1 and OsDEP1, resulting in increased tiller number and diminished panicle size
OsSHI1	Os09g0531600	LOC_Os09g36160	tiller	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	Further, OsSHI1 represses the transcriptional activation activity of IPA1 by affecting its DNA binding activity towards the promoters of both OsTB1 and OsDEP1, resulting in increased tiller number and diminished panicle size
OsSHI1	Os09g0531600	LOC_Os09g36160	map-based cloning	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	Map-based cloning revealed that OsSHI1 encodes a plant-specific transcription factor of the SHORT INTERNODES (SHI) family with a characteristic family-specific IGGH domain and a conserved zinc-finger DNA binding domain
OsSHI1	Os09g0531600	LOC_Os09g36160	architecture	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.
OsSHI1	Os09g0531600	LOC_Os09g36160	architecture	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	Taken together, our results demonstrate that OsSHI1 regulates plant architecture through modulating the transcriptional activity of IPA1 and provide novel insight into the establishment of plant architecture in rice
OsSHI1	Os09g0531600	LOC_Os09g36160	panicle size	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	Further, OsSHI1 represses the transcriptional activation activity of IPA1 by affecting its DNA binding activity towards the promoters of both OsTB1 and OsDEP1, resulting in increased tiller number and diminished panicle size
OsSHI1	Os09g0531600	LOC_Os09g36160	tiller number	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	Further, OsSHI1 represses the transcriptional activation activity of IPA1 by affecting its DNA binding activity towards the promoters of both OsTB1 and OsDEP1, resulting in increased tiller number and diminished panicle size
OsSHI1	Os09g0531600	LOC_Os09g36160	plant architecture	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.
OsSHI1	Os09g0531600	LOC_Os09g36160	plant architecture	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	Taken together, our results demonstrate that OsSHI1 regulates plant architecture through modulating the transcriptional activity of IPA1 and provide novel insight into the establishment of plant architecture in rice
OsSHM1|OsSHMT1	Os03g0738400	LOC_Os03g52840	growth	Characterization and molecular cloning of a serine hydroxymethyltransferase 1 (OsSHM1) in rice.	The osshm1 mutant had chlorotic lesions and a considerably smaller, lethal phenotype under natural ambient CO2 concentrations, but could be restored to wild type with normal growth under elevated CO2 levels (0
OsSHM1|OsSHMT1	Os03g0738400	LOC_Os03g52840	mitochondria	Characterization and molecular cloning of a serine hydroxymethyltransferase 1 (OsSHM1) in rice.	OsSHM1 protein is localized to the mitochondria
OsSHM1|OsSHMT1	Os03g0738400	LOC_Os03g52840	oxidative stress	Characterization and molecular cloning of a serine hydroxymethyltransferase 1 (OsSHM1) in rice.	The data from antioxidant enzymes activity measurement suggested that osshm1 was subjected to significant oxidative stress
OsSHM1|OsSHMT1	Os03g0738400	LOC_Os03g52840	oxidative	Characterization and molecular cloning of a serine hydroxymethyltransferase 1 (OsSHM1) in rice.	The data from antioxidant enzymes activity measurement suggested that osshm1 was subjected to significant oxidative stress
OsSHM1|OsSHMT1	Os03g0738400	LOC_Os03g52840	stress	Characterization and molecular cloning of a serine hydroxymethyltransferase 1 (OsSHM1) in rice.	The data from antioxidant enzymes activity measurement suggested that osshm1 was subjected to significant oxidative stress
OsSHOC1	Os02g0642600	LOC_Os02g42910	meiosis	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.	Our results suggest that OsSHOC1 and OsPTD1 are essential for rice fertilization and CO formation, possibly by stabilizing the recombinant intermediates during meiosis
OsSHOC1	Os02g0642600	LOC_Os02g42910	sterile	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.	Osshoc1 was sterile both in male and female gametophytes, and it showed a striking reduction in the number of meiotic COs, indicating that OsSHOC1 was required for normal CO formation
OsSHOC1	Os02g0642600	LOC_Os02g42910	fertility	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.	Further investigations showed that OsSHOC1 physically interacted with OsPTD1 and that the latter was also required for normal CO formation and plant fertility
OsSHOC1	Os02g0642600	LOC_Os02g42910	meiotic	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.	Osshoc1 was sterile both in male and female gametophytes, and it showed a striking reduction in the number of meiotic COs, indicating that OsSHOC1 was required for normal CO formation
OsSHOC1	Os02g0642600	LOC_Os02g42910	crossover	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.	OsSHOC1 and OsPTD1 are essential for crossover formation during rice meiosis.
OsSHR1	Os07g0586900	LOC_Os07g39820	sheath	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsSHR1	Os07g0586900	LOC_Os07g39820	blight	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsSHR1	Os07g0586900	LOC_Os07g39820	abiotic stress	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsSHR1	Os07g0586900	LOC_Os07g39820	stress	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsSHR1	Os07g0586900	LOC_Os07g39820	biotic stress	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
OsSHR2	Os03g0433200	LOC_Os03g31880	leaf	SHORTROOT-mediated increase in stomatal density has no impact on photosynthetic efficiency.	To test whether the pathway has the potential to similarly pattern epidermal cell-types, we expanded the expression domain of the rice OsSHR2 gene, which we show is restricted to developing leaf veins, to include bundle sheath cells encircling the vein
OsSHR2	Os03g0433200	LOC_Os03g31880	sheath	SHORTROOT-mediated increase in stomatal density has no impact on photosynthetic efficiency.	To test whether the pathway has the potential to similarly pattern epidermal cell-types, we expanded the expression domain of the rice OsSHR2 gene, which we show is restricted to developing leaf veins, to include bundle sheath cells encircling the vein
OsSIDP366	Os06g0693700	LOC_Os06g47860	resistance	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	These results suggest that OsSIDP366 may function as a regulator of the PBs/SGs and positively regulate salt and drought resistance in rice
OsSIDP366	Os06g0693700	LOC_Os06g47860	drought	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	Transgenic rice plants overexpressing OsSIDP366 showed enhanced drought and salinity tolerance and reduced water loss as compared to that in the control, whereas plants with down-regulated OsSIDP366 expression levels using RNA interference (RNAi) were more sensitive to salinity and drought treatments
OsSIDP366	Os06g0693700	LOC_Os06g47860	drought	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	These results suggest that OsSIDP366 may function as a regulator of the PBs/SGs and positively regulate salt and drought resistance in rice
OsSIDP366	Os06g0693700	LOC_Os06g47860	salinity	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	Transgenic rice plants overexpressing OsSIDP366 showed enhanced drought and salinity tolerance and reduced water loss as compared to that in the control, whereas plants with down-regulated OsSIDP366 expression levels using RNA interference (RNAi) were more sensitive to salinity and drought treatments
OsSIDP366	Os06g0693700	LOC_Os06g47860	salt	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	These results suggest that OsSIDP366 may function as a regulator of the PBs/SGs and positively regulate salt and drought resistance in rice
OsSIDP366	Os06g0693700	LOC_Os06g47860	tolerance	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	Transgenic rice plants overexpressing OsSIDP366 showed enhanced drought and salinity tolerance and reduced water loss as compared to that in the control, whereas plants with down-regulated OsSIDP366 expression levels using RNA interference (RNAi) were more sensitive to salinity and drought treatments
OsSIDP366	Os06g0693700	LOC_Os06g47860	stress	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	Subcellular localization analysis revealed that OsSIDP366 is presented in the cytoplasmic foci that colocalized with protein markers for both processing bodies (PBs) and stress granules (SGs) in rice protoplasts
OsSIDP366	Os06g0693700	LOC_Os06g47860	drought resistance	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	These results suggest that OsSIDP366 may function as a regulator of the PBs/SGs and positively regulate salt and drought resistance in rice
OsSIDP366	Os06g0693700	LOC_Os06g47860	abscisic acid	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	The sensitivity to abscisic acid (ABA) treatment was not changed in OsSIDP366-overexpressing plants, and OsSIDP366 expression was not affected in ABA-deficient mutants
OsSIG1	Os08g0163400	LOC_Os08g06630	leaf	The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts	We previously showed that transcripts of OsSIG1, which encodes one such sigma factor in rice, accumulate relatively late during leaf development
OsSIG1	Os08g0163400	LOC_Os08g06630	chloroplast	The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts	Quantitative RT-PCR and northern blot analyses of chloroplast gene expression revealed that the abundance of transcripts derived from the psaA operon was markedly reduced in OsSIG1-/- plants compared with that in wild-type homozygotes
OsSIG1	Os08g0163400	LOC_Os08g06630	chloroplast	The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts	Our results thus indicate that OsSIG1 plays an important role in the maintenance of photosynthetic activity in mature chloroplasts of rice by regulating expression of chloroplast genes for components of photosystem I
OsSIG1	Os08g0163400	LOC_Os08g06630	leaf development	The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts	We previously showed that transcripts of OsSIG1, which encodes one such sigma factor in rice, accumulate relatively late during leaf development
OsSIG1	Os08g0163400	LOC_Os08g06630	leaf development	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice	Gene expression analysis revealed that the OsSIG2A transcript is more abundant than the OsSIG2B transcript in all tissues tested and that both rice SIG2s are expressed from earlier stages of leaf development than that in the case of OsSIG1
OsSIG1	Os08g0163400	LOC_Os08g06630	leaf development	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice
OsSIG1	Os08g0163400	LOC_Os08g06630	leaf	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice	Gene expression analysis revealed that the OsSIG2A transcript is more abundant than the OsSIG2B transcript in all tissues tested and that both rice SIG2s are expressed from earlier stages of leaf development than that in the case of OsSIG1
OsSIG1	Os08g0163400	LOC_Os08g06630	leaf	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice
OsSIG2A	Os11g0448400	LOC_Os11g26160	leaf development	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice	Gene expression analysis revealed that the OsSIG2A transcript is more abundant than the OsSIG2B transcript in all tissues tested and that both rice SIG2s are expressed from earlier stages of leaf development than that in the case of OsSIG1
OsSIG2A	Os11g0448400	LOC_Os11g26160	leaf development	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice
OsSIG2A	Os11g0448400	LOC_Os11g26160	chloroplast	The virescent-2 mutation inhibits translation of plastid transcripts for the plastid genetic system at an early stage of chloroplast differentiation	Accumulation of transcripts of nuclear-encoded photosynthetic genes, such as cab and rbcS, was strongly suppressed in the mutant at later stages of chloroplast differentiation, whereas transcripts of genes for the plastid transcription apparatus, such as OsRpoTp and OsSIG2A, accumulated to abnormally high levels at these stages
OsSIG2A	Os11g0448400	LOC_Os11g26160	leaf	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice	Gene expression analysis revealed that the OsSIG2A transcript is more abundant than the OsSIG2B transcript in all tissues tested and that both rice SIG2s are expressed from earlier stages of leaf development than that in the case of OsSIG1
OsSIG2A	Os11g0448400	LOC_Os11g26160	leaf	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice	Differential Expression of Three Plastidial Sigma Factors,OsSIG1,OsSIG2A, andOsSIG2B, during Leaf Development in Rice
OsSIG2A	Os11g0448400	LOC_Os11g26160	chloroplast	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.
OsSIG2A	Os11g0448400	LOC_Os11g26160	chloroplast	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	Here, we uncovered the essential role of OsSIG2A in rice chloroplast development at low temperatures by a newly reported thermo-sensitive chlorophyll deficient 12 (tcd12) mutant, which exhibited albino leaves with decreased chlorophyll content and malformed chloroplasts at seedling stage under low temperature
OsSIG2A	Os11g0448400	LOC_Os11g26160	chloroplast	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	Taken together, our findings indicate that OsSIG2A is required for early chloroplast differentiation under low temperatures by regulating plastid genes expression
OsSIG2A	Os11g0448400	LOC_Os11g26160	temperature	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.
OsSIG2A	Os11g0448400	LOC_Os11g26160	temperature	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	Here, we uncovered the essential role of OsSIG2A in rice chloroplast development at low temperatures by a newly reported thermo-sensitive chlorophyll deficient 12 (tcd12) mutant, which exhibited albino leaves with decreased chlorophyll content and malformed chloroplasts at seedling stage under low temperature
OsSIG2A	Os11g0448400	LOC_Os11g26160	seedling	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	Here, we uncovered the essential role of OsSIG2A in rice chloroplast development at low temperatures by a newly reported thermo-sensitive chlorophyll deficient 12 (tcd12) mutant, which exhibited albino leaves with decreased chlorophyll content and malformed chloroplasts at seedling stage under low temperature
OsSIG2A	Os11g0448400	LOC_Os11g26160	development	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.
OsSIG2A	Os11g0448400	LOC_Os11g26160	development	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	Here, we uncovered the essential role of OsSIG2A in rice chloroplast development at low temperatures by a newly reported thermo-sensitive chlorophyll deficient 12 (tcd12) mutant, which exhibited albino leaves with decreased chlorophyll content and malformed chloroplasts at seedling stage under low temperature
OsSIG2A	Os11g0448400	LOC_Os11g26160	chloroplast development	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.
OsSIG2A	Os11g0448400	LOC_Os11g26160	chloroplast development	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	Here, we uncovered the essential role of OsSIG2A in rice chloroplast development at low temperatures by a newly reported thermo-sensitive chlorophyll deficient 12 (tcd12) mutant, which exhibited albino leaves with decreased chlorophyll content and malformed chloroplasts at seedling stage under low temperature
OsSIG5	Os05g0586600	LOC_Os05g50930	chloroplast	Two novel nuclear genes, OsSIG5 and OsSIG6, encoding potential plastid sigma factors of RNA polymerase in rice: tissue-specific and light-responsive gene expression	The N-terminal region of OsSig5 conferred import of green fluorescent protein into the chloroplast
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	stem	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	OsSIK1 promoter-GUS analysis revealed that OsSIK1 is expressed mainly in the stem and spikelet in rice
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	stem	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	These results indicate that OsSIK1 plays important roles in salt and drought stress tolerance in rice, through the activation of the antioxidative system
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	stomata	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	We also show that OsSIK1 affects stomatal density in the abaxial and adaxial leaf epidermis of rice
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	stomatal	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	We also show that OsSIK1 affects stomatal density in the abaxial and adaxial leaf epidermis of rice
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	leaf	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	We also show that OsSIK1 affects stomatal density in the abaxial and adaxial leaf epidermis of rice
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	oxidative	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	These results indicate that OsSIK1 plays important roles in salt and drought stress tolerance in rice, through the activation of the antioxidative system
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	drought	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	The expression of OsSIK1 is mainly induced by salt, drought and H(2)O(2) treatments
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	drought	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	Transgenic rice plants with overexpression of OsSIK1 show higher tolerance to salt and drought stresses than control plants
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	drought	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	These results indicate that OsSIK1 plays important roles in salt and drought stress tolerance in rice, through the activation of the antioxidative system
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	drought	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	spikelet	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	OsSIK1 promoter-GUS analysis revealed that OsSIK1 is expressed mainly in the stem and spikelet in rice
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	salt	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	The expression of OsSIK1 is mainly induced by salt, drought and H(2)O(2) treatments
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	salt	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	Transgenic rice plants with overexpression of OsSIK1 show higher tolerance to salt and drought stresses than control plants
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	salt	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	These results indicate that OsSIK1 plays important roles in salt and drought stress tolerance in rice, through the activation of the antioxidative system
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	salt	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	salt stress	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	shoot	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	OsERL is expressed in shoot apcies, internodes and anthers, and within the anther OsERL is expressed in sporophytic and tapetal cells
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	development	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	Results showed that mutations in OsERL led to striking defects in anther development
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	development	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	Cell biological analyses revealed that mutations in OsERL led to defected periclinal division in archesporial cells in anthers, suggesting a critical role of OsERL in rice anther development
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	anther	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	anther	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	Results showed that mutations in OsERL led to striking defects in anther development
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	anther	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	OsERL is expressed in shoot apcies, internodes and anthers, and within the anther OsERL is expressed in sporophytic and tapetal cells
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	anther	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	Cell biological analyses revealed that mutations in OsERL led to defected periclinal division in archesporial cells in anthers, suggesting a critical role of OsERL in rice anther development
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	Kinase	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	anther development	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	Results showed that mutations in OsERL led to striking defects in anther development
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	anther development	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	Cell biological analyses revealed that mutations in OsERL led to defected periclinal division in archesporial cells in anthers, suggesting a critical role of OsERL in rice anther development
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	tapetal	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	OsERL is expressed in shoot apcies, internodes and anthers, and within the anther OsERL is expressed in sporophytic and tapetal cells
OsSIK1|OsERL	Os06g0130100	LOC_Os06g03970	kinase	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice
OsSIK2	Os07g0186200	LOC_Os07g08860	growth	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	These results indicate that OsSIK2 may integrate stress signals into a developmental program for better adaptive growth under unfavorable conditions
OsSIK2	Os07g0186200	LOC_Os07g08860	abiotic stress	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Here, we report that OsSIK2, an S-domain receptor-like kinase from rice (Oryza sativa), is involved in abiotic stress and the senescence process
OsSIK2	Os07g0186200	LOC_Os07g08860	abiotic stress	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice
OsSIK2	Os07g0186200	LOC_Os07g08860	salt	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Transgenic plants overexpressing OsSIK2 and mutant sik2 exhibit enhanced and reduced tolerance to salt and drought stress, respectively, compared with the controls
OsSIK2	Os07g0186200	LOC_Os07g08860	salt	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Interestingly, a truncated version of OsSIK2 without most of the extracellular region confers higher salt tolerance than the full-length OsSIK2, likely through the activation of different sets of downstream genes
OsSIK2	Os07g0186200	LOC_Os07g08860	salt	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	The downstream PR-related genes specifically up-regulated by full-length OsSIK2 or the DREB-like genes solely enhanced by truncated OsSIK2 are all induced by salt, drought, and dark treatments
OsSIK2	Os07g0186200	LOC_Os07g08860	salt tolerance	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Interestingly, a truncated version of OsSIK2 without most of the extracellular region confers higher salt tolerance than the full-length OsSIK2, likely through the activation of different sets of downstream genes
OsSIK2	Os07g0186200	LOC_Os07g08860	drought	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	OsSIK2 is expressed mainly in rice leaf and sheath and can be induced by NaCl, drought, cold, dark, and abscisic acid treatment
OsSIK2	Os07g0186200	LOC_Os07g08860	drought	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Transgenic plants overexpressing OsSIK2 and mutant sik2 exhibit enhanced and reduced tolerance to salt and drought stress, respectively, compared with the controls
OsSIK2	Os07g0186200	LOC_Os07g08860	drought	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	The downstream PR-related genes specifically up-regulated by full-length OsSIK2 or the DREB-like genes solely enhanced by truncated OsSIK2 are all induced by salt, drought, and dark treatments
OsSIK2	Os07g0186200	LOC_Os07g08860	senescence	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Here, we report that OsSIK2, an S-domain receptor-like kinase from rice (Oryza sativa), is involved in abiotic stress and the senescence process
OsSIK2	Os07g0186200	LOC_Os07g08860	senescence	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Moreover, seedlings of OsSIK2-overexpressing transgenic plants exhibit early leaf development and a delayed dark-induced senescence phenotype, while mutant sik2 shows the opposite phenotype
OsSIK2	Os07g0186200	LOC_Os07g08860	senescence	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice
OsSIK2	Os07g0186200	LOC_Os07g08860	seedling	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Moreover, seedlings of OsSIK2-overexpressing transgenic plants exhibit early leaf development and a delayed dark-induced senescence phenotype, while mutant sik2 shows the opposite phenotype
OsSIK2	Os07g0186200	LOC_Os07g08860	leaf	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	OsSIK2 is expressed mainly in rice leaf and sheath and can be induced by NaCl, drought, cold, dark, and abscisic acid treatment
OsSIK2	Os07g0186200	LOC_Os07g08860	leaf	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Moreover, seedlings of OsSIK2-overexpressing transgenic plants exhibit early leaf development and a delayed dark-induced senescence phenotype, while mutant sik2 shows the opposite phenotype
OsSIK2	Os07g0186200	LOC_Os07g08860	leaf	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice
OsSIK2	Os07g0186200	LOC_Os07g08860	sheath	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	OsSIK2 is expressed mainly in rice leaf and sheath and can be induced by NaCl, drought, cold, dark, and abscisic acid treatment
OsSIK2	Os07g0186200	LOC_Os07g08860	leaf development	An S-domain receptor-like kinase, OsSIK2, confers abiotic stress tolerance and delays dark-induced leaf senescence in rice	Moreover, seedlings of OsSIK2-overexpressing transgenic plants exhibit early leaf development and a delayed dark-induced senescence phenotype, while mutant sik2 shows the opposite phenotype
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	stem	Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa	Our results suggest that OsSIN is a new member in the GA pathway regulating rice stem development
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	dwarf	Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa	Constitutive expression of OsSIN resulted in dwarfism and reduced number of inferior spikelets
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	spikelet	Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa	Constitutive expression of OsSIN resulted in dwarfism and reduced number of inferior spikelets
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	ga	Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa	The rice with OsSIN overexpression was less sensitive to GA than the wild type in terms of the second leaf sheath length
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	ga	Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa	Our results suggest that OsSIN is a new member in the GA pathway regulating rice stem development
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	sheath	Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa	The rice with OsSIN overexpression was less sensitive to GA than the wild type in terms of the second leaf sheath length
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	leaf	Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa	The rice with OsSIN overexpression was less sensitive to GA than the wild type in terms of the second leaf sheath length
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	growth	Antagonistic regulation of the gibberellic acid response during stem growth in rice	Furthermore, an analysis of genetic diversity suggests that mutations in ACE1 and DEC1 have historically contributed to the selection of shorter plants in domesticated populations of rice to increase their resistance to lodging, and of taller plants in wild species of rice for adaptation to growth in deep water
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	resistance	Antagonistic regulation of the gibberellic acid response during stem growth in rice	Furthermore, an analysis of genetic diversity suggests that mutations in ACE1 and DEC1 have historically contributed to the selection of shorter plants in domesticated populations of rice to increase their resistance to lodging, and of taller plants in wild species of rice for adaptation to growth in deep water
OsSIN|ACE1	Os03g0346150|Os03g0346200	LOC_Os03g22510	internode elongation	Antagonistic regulation of the gibberellic acid response during stem growth in rice	We also show that the mechanism of internode elongation that is mediated by ACE1 and DEC1 is conserved in the Gramineae family
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	salt	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	OsSIPP2C1 expression was up-regulated by high salt, PEG6000 and exogenous ABA, and enhanced in the abl1 mutant under normal, salt, or drought condition
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	panicle	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	Interestingly, OsSIPP2C1 expression was increased during the early panicle development
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	panicle	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	Together, it is suggested that a nuclear PP2C protein OsSIPP2C1 negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	transcription factor	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Microarray analysis of transgenic plants overexpressing OsNAP revealed that many stress-related genes were up-regulated, including OsPP2C06/OsABI2, OsPP2C09, OsPP2C68 and OsSalT, and some genes coding for stress-related transcription factors (OsDREB1A, OsMYB2, OsAP37 and OsAP59)
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	abiotic stress	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	Together, it is suggested that a nuclear PP2C protein OsSIPP2C1 negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	salt	The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway	Microarray analysis of transgenic plants overexpressing OsNAP revealed that many stress-related genes were up-regulated, including OsPP2C06/OsABI2, OsPP2C09, OsPP2C68 and OsSalT, and some genes coding for stress-related transcription factors (OsDREB1A, OsMYB2, OsAP37 and OsAP59)
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	drought	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice	OsSIPP2C1 expression was up-regulated by high salt, PEG6000 and exogenous ABA, and enhanced in the abl1 mutant under normal, salt, or drought condition
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	root	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Genetic analysis revealed that Arabidopsis plants overexpressing OsPP108 are highly insensitive to ABA and tolerant to high salt and mannitol stresses during seed germination, root growth and overall seedling growth
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	growth	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Genetic analysis revealed that Arabidopsis plants overexpressing OsPP108 are highly insensitive to ABA and tolerant to high salt and mannitol stresses during seed germination, root growth and overall seedling growth
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	seed	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Genetic analysis revealed that Arabidopsis plants overexpressing OsPP108 are highly insensitive to ABA and tolerant to high salt and mannitol stresses during seed germination, root growth and overall seedling growth
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	seedling	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Genetic analysis revealed that Arabidopsis plants overexpressing OsPP108 are highly insensitive to ABA and tolerant to high salt and mannitol stresses during seed germination, root growth and overall seedling growth
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	drought	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	At adult stage, OsPP108 overexpression leads to high tolerance to salt, mannitol and drought stresses with far better physiological parameters such as water loss, fresh weight, chlorophyll content and photosynthetic potential (Fv/Fm) in transgenic Arabidopsis plants
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	salt	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Genetic analysis revealed that Arabidopsis plants overexpressing OsPP108 are highly insensitive to ABA and tolerant to high salt and mannitol stresses during seed germination, root growth and overall seedling growth
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	seed germination	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Genetic analysis revealed that Arabidopsis plants overexpressing OsPP108 are highly insensitive to ABA and tolerant to high salt and mannitol stresses during seed germination, root growth and overall seedling growth
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	tolerance	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	At adult stage, OsPP108 overexpression leads to high tolerance to salt, mannitol and drought stresses with far better physiological parameters such as water loss, fresh weight, chlorophyll content and photosynthetic potential (Fv/Fm) in transgenic Arabidopsis plants
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	tolerance	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Expression profile of various stress marker genes in OsPP108 overexpressing plants revealed interplay of ABA dependent and independent pathway for abiotic stress tolerance
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	abiotic stress	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Expression profile of various stress marker genes in OsPP108 overexpressing plants revealed interplay of ABA dependent and independent pathway for abiotic stress tolerance
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	ABA	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Genetic analysis revealed that Arabidopsis plants overexpressing OsPP108 are highly insensitive to ABA and tolerant to high salt and mannitol stresses during seed germination, root growth and overall seedling growth
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	ABA	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Expression profile of various stress marker genes in OsPP108 overexpressing plants revealed interplay of ABA dependent and independent pathway for abiotic stress tolerance
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	stress	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Expression profile of various stress marker genes in OsPP108 overexpressing plants revealed interplay of ABA dependent and independent pathway for abiotic stress tolerance
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	biotic stress	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Expression profile of various stress marker genes in OsPP108 overexpressing plants revealed interplay of ABA dependent and independent pathway for abiotic stress tolerance
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	water loss	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	At adult stage, OsPP108 overexpression leads to high tolerance to salt, mannitol and drought stresses with far better physiological parameters such as water loss, fresh weight, chlorophyll content and photosynthetic potential (Fv/Fm) in transgenic Arabidopsis plants
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	ABA	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Genetic analysis revealed that Arabidopsis plants overexpressing OsPP108 are highly insensitive to ABA and tolerant to high salt and mannitol stresses during seed germination, root growth and overall seedling growth
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	ABA	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Expression profile of various stress marker genes in OsPP108 overexpressing plants revealed interplay of ABA dependent and independent pathway for abiotic stress tolerance
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	drought stress	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	At adult stage, OsPP108 overexpression leads to high tolerance to salt, mannitol and drought stresses with far better physiological parameters such as water loss, fresh weight, chlorophyll content and photosynthetic potential (Fv/Fm) in transgenic Arabidopsis plants
OsSIPP2C1|OsPP2C68|OsPP108	Os09g0325700	LOC_Os09g15670	stress tolerance	ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.	Expression profile of various stress marker genes in OsPP108 overexpressing plants revealed interplay of ABA dependent and independent pathway for abiotic stress tolerance
OsSIRH2-14	Os04g0571200	LOC_Os04g48260	root	A rice RING H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	OsSIRH2-14 expression was induced in root and shoot tissues treated with NaCl
OsSIRH2-14	Os04g0571200	LOC_Os04g48260	shoot	A rice RING H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	OsSIRH2-14 expression was induced in root and shoot tissues treated with NaCl
OsSIRH2-14	Os04g0571200	LOC_Os04g48260	salinity	A rice RING H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	Here, we characterized the rice (Oryza sativa) RING H2-type E3 ligase, OsSIRH2-14 (previously named OsRFPH2-14), which plays a positive role in salinity tolerance by regulating salt-related proteins including an HKT-type Na+ transporter (OsHKT2;1)
OsSIRH2-14	Os04g0571200	LOC_Os04g48260	salinity	A rice RING H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	These results suggest that the OsSIRH2-14 RING E3 ligase positively regulates the salinity stress response by modulating the stability of salt-related proteins
OsSIRH2-14	Os04g0571200	LOC_Os04g48260	tolerance	A rice RING H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	Here, we characterized the rice (Oryza sativa) RING H2-type E3 ligase, OsSIRH2-14 (previously named OsRFPH2-14), which plays a positive role in salinity tolerance by regulating salt-related proteins including an HKT-type Na+ transporter (OsHKT2;1)
OsSIRH2-14	Os04g0571200	LOC_Os04g48260	stress	A rice RING H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	These results suggest that the OsSIRH2-14 RING E3 ligase positively regulates the salinity stress response by modulating the stability of salt-related proteins
OsSIRH2-14	Os04g0571200	LOC_Os04g48260	salinity stress	A rice RING H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	These results suggest that the OsSIRH2-14 RING E3 ligase positively regulates the salinity stress response by modulating the stability of salt-related proteins
OsSIRH2-14	Os04g0571200	LOC_Os04g48260	transporter	A rice RING H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	Here, we characterized the rice (Oryza sativa) RING H2-type E3 ligase, OsSIRH2-14 (previously named OsRFPH2-14), which plays a positive role in salinity tolerance by regulating salt-related proteins including an HKT-type Na+ transporter (OsHKT2;1)
OsSIRH2-14	Os04g0571200	LOC_Os04g48260	stress response	A rice RING H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	These results suggest that the OsSIRH2-14 RING E3 ligase positively regulates the salinity stress response by modulating the stability of salt-related proteins
OsSIRK1	Os09g0356000	LOC_Os09g19140	disease	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	The BRHIS1-containing complex represses the expression of some disease defense-related genes, including the pathogenesis-related gene OsPBZc and the leucine-rich-repeat (LRR) receptor-like protein kinase gene OsSIRK1
OsSIRK1	Os09g0356000	LOC_Os09g19140	Kinase	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	The BRHIS1-containing complex represses the expression of some disease defense-related genes, including the pathogenesis-related gene OsPBZc and the leucine-rich-repeat (LRR) receptor-like protein kinase gene OsSIRK1
OsSIRP1	Os05g0488800	LOC_Os05g40980	root	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth
OsSIRP1	Os05g0488800	LOC_Os05g40980	growth	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth
OsSIRP1	Os05g0488800	LOC_Os05g40980	seed	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth
OsSIRP1	Os05g0488800	LOC_Os05g40980	salinity	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth
OsSIRP1	Os05g0488800	LOC_Os05g40980	salinity	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Our findings indicate that OsSIRP1 acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system
OsSIRP1	Os05g0488800	LOC_Os05g40980	seed germination	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth
OsSIRP1	Os05g0488800	LOC_Os05g40980	tolerance	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth
OsSIRP1	Os05g0488800	LOC_Os05g40980	tolerance	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Our findings indicate that OsSIRP1 acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system
OsSIRP1	Os05g0488800	LOC_Os05g40980	salinity stress	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth
OsSIRP1	Os05g0488800	LOC_Os05g40980	salinity stress	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Our findings indicate that OsSIRP1 acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system
OsSIRP1	Os05g0488800	LOC_Os05g40980	stress	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Transcript levels of OsSIRP1 in rice leaves after various stress treatments, including salt, heat, drought, and hormone (ABA), were observed
OsSIRP1	Os05g0488800	LOC_Os05g40980	stress	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth
OsSIRP1	Os05g0488800	LOC_Os05g40980	stress	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Our findings indicate that OsSIRP1 acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system
OsSIRP1	Os05g0488800	LOC_Os05g40980	Ubiquitin	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Our findings indicate that OsSIRP1 acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system
OsSIRP1	Os05g0488800	LOC_Os05g40980	stress tolerance	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Our findings indicate that OsSIRP1 acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system
OsSIRP2	Os03g0798200	LOC_Os03g58390	salinity	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overexpression of OsSIRP2 conferred salinity and osmotic stress tolerance in plants
OsSIRP2	Os03g0798200	LOC_Os03g58390	salinity	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Heterogeneous overexpression of OsSIRP2 resulted in conferring tolerance against salinity and osmotic stress
OsSIRP2	Os03g0798200	LOC_Os03g58390	salt	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overall, our findings suggest that OsSIRP2 may be associated with plant responses to abiotic stresses and act as a positive regulator of salt and osmotic stress tolerance
OsSIRP2	Os03g0798200	LOC_Os03g58390	tolerance	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overexpression of OsSIRP2 conferred salinity and osmotic stress tolerance in plants
OsSIRP2	Os03g0798200	LOC_Os03g58390	tolerance	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Heterogeneous overexpression of OsSIRP2 resulted in conferring tolerance against salinity and osmotic stress
OsSIRP2	Os03g0798200	LOC_Os03g58390	tolerance	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overall, our findings suggest that OsSIRP2 may be associated with plant responses to abiotic stresses and act as a positive regulator of salt and osmotic stress tolerance
OsSIRP2	Os03g0798200	LOC_Os03g58390	abiotic stress	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	The transcript levels of OsSIRP2 in rice leaves were induced in response to different abiotic stresses, such as salt, drought, heat, and abscisic acid (ABA) exposure
OsSIRP2	Os03g0798200	LOC_Os03g58390	abiotic stress	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overall, our findings suggest that OsSIRP2 may be associated with plant responses to abiotic stresses and act as a positive regulator of salt and osmotic stress tolerance
OsSIRP2	Os03g0798200	LOC_Os03g58390	stress	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overexpression of OsSIRP2 conferred salinity and osmotic stress tolerance in plants
OsSIRP2	Os03g0798200	LOC_Os03g58390	stress	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Heterogeneous overexpression of OsSIRP2 resulted in conferring tolerance against salinity and osmotic stress
OsSIRP2	Os03g0798200	LOC_Os03g58390	stress	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overall, our findings suggest that OsSIRP2 may be associated with plant responses to abiotic stresses and act as a positive regulator of salt and osmotic stress tolerance
OsSIRP2	Os03g0798200	LOC_Os03g58390	biotic stress	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	The transcript levels of OsSIRP2 in rice leaves were induced in response to different abiotic stresses, such as salt, drought, heat, and abscisic acid (ABA) exposure
OsSIRP2	Os03g0798200	LOC_Os03g58390	biotic stress	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overall, our findings suggest that OsSIRP2 may be associated with plant responses to abiotic stresses and act as a positive regulator of salt and osmotic stress tolerance
OsSIRP2	Os03g0798200	LOC_Os03g58390	abscisic acid	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	The transcript levels of OsSIRP2 in rice leaves were induced in response to different abiotic stresses, such as salt, drought, heat, and abscisic acid (ABA) exposure
OsSIRP2	Os03g0798200	LOC_Os03g58390	stress tolerance	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overexpression of OsSIRP2 conferred salinity and osmotic stress tolerance in plants
OsSIRP2	Os03g0798200	LOC_Os03g58390	stress tolerance	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Overall, our findings suggest that OsSIRP2 may be associated with plant responses to abiotic stresses and act as a positive regulator of salt and osmotic stress tolerance
OsSIRP4	Os04g0105100	LOC_Os04g01490	salt	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	OsSIRP4 is an E3 ligase that acts as a negative regulator in the plant response to salt stress via the 26S proteasomal system regulation of substrate proteins, OsPEX11-1, which it provides important information for adaptation and regulation in rice
OsSIRP4	Os04g0105100	LOC_Os04g01490	salt	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	OsSIRP4 transcripts were highly induced under salt stress in rice
OsSIRP4	Os04g0105100	LOC_Os04g01490	salt	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	Furthermore, qRT data on transgenic plants suggest that OsSIRP4 acted as a negative regulator of salt response by diminishing the expression of genes related to Na+/K+ homeostasis (AtSOS1, AtAKT1, AtNHX1, and AtHKT1;1) in transgenic plants under salt stress
OsSIRP4	Os04g0105100	LOC_Os04g01490	salt	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	These results suggest that OsSIRP4 plays a negative regulatory role in response to salt stress by modulating the target protein levels
OsSIRP4	Os04g0105100	LOC_Os04g01490	salt stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	OsSIRP4 is an E3 ligase that acts as a negative regulator in the plant response to salt stress via the 26S proteasomal system regulation of substrate proteins, OsPEX11-1, which it provides important information for adaptation and regulation in rice
OsSIRP4	Os04g0105100	LOC_Os04g01490	salt stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	OsSIRP4 transcripts were highly induced under salt stress in rice
OsSIRP4	Os04g0105100	LOC_Os04g01490	salt stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	Furthermore, qRT data on transgenic plants suggest that OsSIRP4 acted as a negative regulator of salt response by diminishing the expression of genes related to Na+/K+ homeostasis (AtSOS1, AtAKT1, AtNHX1, and AtHKT1;1) in transgenic plants under salt stress
OsSIRP4	Os04g0105100	LOC_Os04g01490	salt stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	These results suggest that OsSIRP4 plays a negative regulatory role in response to salt stress by modulating the target protein levels
OsSIRP4	Os04g0105100	LOC_Os04g01490	stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	OsSIRP4 is an E3 ligase that acts as a negative regulator in the plant response to salt stress via the 26S proteasomal system regulation of substrate proteins, OsPEX11-1, which it provides important information for adaptation and regulation in rice
OsSIRP4	Os04g0105100	LOC_Os04g01490	stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	OsSIRP4 transcripts were highly induced under salt stress in rice
OsSIRP4	Os04g0105100	LOC_Os04g01490	stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	Furthermore, qRT data on transgenic plants suggest that OsSIRP4 acted as a negative regulator of salt response by diminishing the expression of genes related to Na+/K+ homeostasis (AtSOS1, AtAKT1, AtNHX1, and AtHKT1;1) in transgenic plants under salt stress
OsSIRP4	Os04g0105100	LOC_Os04g01490	stress	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	These results suggest that OsSIRP4 plays a negative regulatory role in response to salt stress by modulating the target protein levels
OsSIRP4	Os04g0105100	LOC_Os04g01490	homeostasis	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein	Furthermore, qRT data on transgenic plants suggest that OsSIRP4 acted as a negative regulator of salt response by diminishing the expression of genes related to Na+/K+ homeostasis (AtSOS1, AtAKT1, AtNHX1, and AtHKT1;1) in transgenic plants under salt stress
OsSIZ1	Os05g0125000	LOC_Os05g03430	flower	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The results showed that the mutant Ossiz1 exhibited the significant changes in several growth and developmental parameters, including primary root length, adventitious root number, plant height, leaf and panicle length, flower formation, and seed-setting rate compared with wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	vegetative	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The function in the vegetative growth and reproductive development in rice was investigated using OsSIZ1 mutants containing a T-DNA insertion
OsSIZ1	Os05g0125000	LOC_Os05g03430	vegetative	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice
OsSIZ1	Os05g0125000	LOC_Os05g03430	seed	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The results showed that the mutant Ossiz1 exhibited the significant changes in several growth and developmental parameters, including primary root length, adventitious root number, plant height, leaf and panicle length, flower formation, and seed-setting rate compared with wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	seed	Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice	In addition, ABA-hypersensitivity of siz1-2 seed germination was partially suppressed by OsSIZ1 and OsSIZ2
OsSIZ1	Os05g0125000	LOC_Os05g03430	leaf	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The results showed that the mutant Ossiz1 exhibited the significant changes in several growth and developmental parameters, including primary root length, adventitious root number, plant height, leaf and panicle length, flower formation, and seed-setting rate compared with wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	height	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The results showed that the mutant Ossiz1 exhibited the significant changes in several growth and developmental parameters, including primary root length, adventitious root number, plant height, leaf and panicle length, flower formation, and seed-setting rate compared with wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	panicle	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The results showed that the mutant Ossiz1 exhibited the significant changes in several growth and developmental parameters, including primary root length, adventitious root number, plant height, leaf and panicle length, flower formation, and seed-setting rate compared with wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	reproductive	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The function in the vegetative growth and reproductive development in rice was investigated using OsSIZ1 mutants containing a T-DNA insertion
OsSIZ1	Os05g0125000	LOC_Os05g03430	reproductive	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice
OsSIZ1	Os05g0125000	LOC_Os05g03430	root	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The results showed that the mutant Ossiz1 exhibited the significant changes in several growth and developmental parameters, including primary root length, adventitious root number, plant height, leaf and panicle length, flower formation, and seed-setting rate compared with wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	adventitious root	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The results showed that the mutant Ossiz1 exhibited the significant changes in several growth and developmental parameters, including primary root length, adventitious root number, plant height, leaf and panicle length, flower formation, and seed-setting rate compared with wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	primary root	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The results showed that the mutant Ossiz1 exhibited the significant changes in several growth and developmental parameters, including primary root length, adventitious root number, plant height, leaf and panicle length, flower formation, and seed-setting rate compared with wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	seed germination	Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice	In addition, ABA-hypersensitivity of siz1-2 seed germination was partially suppressed by OsSIZ1 and OsSIZ2
OsSIZ1	Os05g0125000	LOC_Os05g03430	growth	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The function in the vegetative growth and reproductive development in rice was investigated using OsSIZ1 mutants containing a T-DNA insertion
OsSIZ1	Os05g0125000	LOC_Os05g03430	growth	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	The results showed that the mutant Ossiz1 exhibited the significant changes in several growth and developmental parameters, including primary root length, adventitious root number, plant height, leaf and panicle length, flower formation, and seed-setting rate compared with wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	growth	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	Taking together these results indicate that OsSIZ1 plays an important role in regulating growth and development in rice
OsSIZ1	Os05g0125000	LOC_Os05g03430	growth	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice
OsSIZ1	Os05g0125000	LOC_Os05g03430	xylem	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Pi concentration in the xylem sap of ossiz1 mutants was significantly higher than that of the wild type under a Pi-sufficient growth regime
OsSIZ1	Os05g0125000	LOC_Os05g03430	vascular bundle	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	OsSIZ1 is constitutively expressed throughout the vegetative and reproductive growth of rice, with stronger promoter activities in vascular bundles of culms
OsSIZ1	Os05g0125000	LOC_Os05g03430	root	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	ossiz1 mutants had shorter primary roots and adventitious roots than wild-type plants, suggesting that OsSIZ1 is associated with the regulation of root system architecture
OsSIZ1	Os05g0125000	LOC_Os05g03430	growth	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	OsSIZ1 is constitutively expressed throughout the vegetative and reproductive growth of rice, with stronger promoter activities in vascular bundles of culms
OsSIZ1	Os05g0125000	LOC_Os05g03430	growth	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Pi concentration in the xylem sap of ossiz1 mutants was significantly higher than that of the wild type under a Pi-sufficient growth regime
OsSIZ1	Os05g0125000	LOC_Os05g03430	nitrogen	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Here, we investigated the expression profile of OsSIZ1 in rice using quantitative reverse transcription-PCR (qRT-PCR) and pOsSIZ1-GUS transgenic plants, and the function of OsSIZ1 in the responses to phosphate and nitrogen using a reverse genetics approach
OsSIZ1	Os05g0125000	LOC_Os05g03430	nitrogen	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Total nitrogen (N) concentrations in the most detected tissues of ossiz1 mutants were significantly increased compared with the wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	vegetative	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	OsSIZ1 is constitutively expressed throughout the vegetative and reproductive growth of rice, with stronger promoter activities in vascular bundles of culms
OsSIZ1	Os05g0125000	LOC_Os05g03430	reproductive	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	OsSIZ1 is constitutively expressed throughout the vegetative and reproductive growth of rice, with stronger promoter activities in vascular bundles of culms
OsSIZ1	Os05g0125000	LOC_Os05g03430	architecture	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	ossiz1 mutants had shorter primary roots and adventitious roots than wild-type plants, suggesting that OsSIZ1 is associated with the regulation of root system architecture
OsSIZ1	Os05g0125000	LOC_Os05g03430	adventitious root	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	ossiz1 mutants had shorter primary roots and adventitious roots than wild-type plants, suggesting that OsSIZ1 is associated with the regulation of root system architecture
OsSIZ1	Os05g0125000	LOC_Os05g03430	primary root	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	ossiz1 mutants had shorter primary roots and adventitious roots than wild-type plants, suggesting that OsSIZ1 is associated with the regulation of root system architecture
OsSIZ1	Os05g0125000	LOC_Os05g03430	Pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Total phosphorus (P) and phosphate (Pi) concentrations in both roots and shoots of ossiz1 mutants were significantly increased irrespective of Pi supply conditions compared with the wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	Pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Pi concentration in the xylem sap of ossiz1 mutants was significantly higher than that of the wild type under a Pi-sufficient growth regime
OsSIZ1	Os05g0125000	LOC_Os05g03430	Pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Analysis of mineral contents in ossiz1 mutants indicated that OsSIZ1 functions specifically in Pi and N responses, not those of other nutrients examined, in rice
OsSIZ1	Os05g0125000	LOC_Os05g03430	Pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Further, qRT-PCR analyses revealed that the expression of multiple genes involved in Pi starvation signaling and N transport and assimilation were altered in ossiz1 mutants
OsSIZ1	Os05g0125000	LOC_Os05g03430	Pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Together, these results suggested that OsSIZ1 may act as a regulator of the Pi (N)-dependent responses in rice
OsSIZ1	Os05g0125000	LOC_Os05g03430	phosphate	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Here, we investigated the expression profile of OsSIZ1 in rice using quantitative reverse transcription-PCR (qRT-PCR) and pOsSIZ1-GUS transgenic plants, and the function of OsSIZ1 in the responses to phosphate and nitrogen using a reverse genetics approach
OsSIZ1	Os05g0125000	LOC_Os05g03430	phosphate	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Total phosphorus (P) and phosphate (Pi) concentrations in both roots and shoots of ossiz1 mutants were significantly increased irrespective of Pi supply conditions compared with the wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Total phosphorus (P) and phosphate (Pi) concentrations in both roots and shoots of ossiz1 mutants were significantly increased irrespective of Pi supply conditions compared with the wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Pi concentration in the xylem sap of ossiz1 mutants was significantly higher than that of the wild type under a Pi-sufficient growth regime
OsSIZ1	Os05g0125000	LOC_Os05g03430	pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Analysis of mineral contents in ossiz1 mutants indicated that OsSIZ1 functions specifically in Pi and N responses, not those of other nutrients examined, in rice
OsSIZ1	Os05g0125000	LOC_Os05g03430	pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Further, qRT-PCR analyses revealed that the expression of multiple genes involved in Pi starvation signaling and N transport and assimilation were altered in ossiz1 mutants
OsSIZ1	Os05g0125000	LOC_Os05g03430	pi	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Together, these results suggested that OsSIZ1 may act as a regulator of the Pi (N)-dependent responses in rice
OsSIZ1	Os05g0125000	LOC_Os05g03430	phosphorus	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Total phosphorus (P) and phosphate (Pi) concentrations in both roots and shoots of ossiz1 mutants were significantly increased irrespective of Pi supply conditions compared with the wild type
OsSIZ1	Os05g0125000	LOC_Os05g03430	root system architecture	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	ossiz1 mutants had shorter primary roots and adventitious roots than wild-type plants, suggesting that OsSIZ1 is associated with the regulation of root system architecture
OsSIZ1	Os05g0125000	LOC_Os05g03430	reproductive growth	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	OsSIZ1 is constitutively expressed throughout the vegetative and reproductive growth of rice, with stronger promoter activities in vascular bundles of culms
OsSIZ1	Os05g0125000	LOC_Os05g03430	growth	Overexpression of the Rice SUMO E3 Ligase Gene OsSIZ1 in Cotton Enhances Drought and Heat Tolerance, and Substantially Improves Fiber Yields in the Field under Reduced Irrigation and Rainfed Conditions.	We report here that overexpression of OsSIZ1 in cotton results in higher net photosynthesis and better growth than wild-type cotton under drought and thermal stresses in growth chamber and greenhouse conditions
OsSIZ1	Os05g0125000	LOC_Os05g03430	drought	Overexpression of the Rice SUMO E3 Ligase Gene OsSIZ1 in Cotton Enhances Drought and Heat Tolerance, and Substantially Improves Fiber Yields in the Field under Reduced Irrigation and Rainfed Conditions.	Overexpression of the Rice SUMO E3 Ligase Gene OsSIZ1 in Cotton Enhances Drought and Heat Tolerance, and Substantially Improves Fiber Yields in the Field under Reduced Irrigation and Rainfed Conditions.
OsSIZ1	Os05g0125000	LOC_Os05g03430	drought	Overexpression of the Rice SUMO E3 Ligase Gene OsSIZ1 in Cotton Enhances Drought and Heat Tolerance, and Substantially Improves Fiber Yields in the Field under Reduced Irrigation and Rainfed Conditions.	We report here that overexpression of OsSIZ1 in cotton results in higher net photosynthesis and better growth than wild-type cotton under drought and thermal stresses in growth chamber and greenhouse conditions
OsSIZ1	Os05g0125000	LOC_Os05g03430	photosynthesis	Overexpression of the Rice SUMO E3 Ligase Gene OsSIZ1 in Cotton Enhances Drought and Heat Tolerance, and Substantially Improves Fiber Yields in the Field under Reduced Irrigation and Rainfed Conditions.	We report here that overexpression of OsSIZ1 in cotton results in higher net photosynthesis and better growth than wild-type cotton under drought and thermal stresses in growth chamber and greenhouse conditions
OsSIZ1	Os05g0125000	LOC_Os05g03430	heat tolerance	Overexpression of the Rice SUMO E3 Ligase Gene OsSIZ1 in Cotton Enhances Drought and Heat Tolerance, and Substantially Improves Fiber Yields in the Field under Reduced Irrigation and Rainfed Conditions.	Overexpression of the Rice SUMO E3 Ligase Gene OsSIZ1 in Cotton Enhances Drought and Heat Tolerance, and Substantially Improves Fiber Yields in the Field under Reduced Irrigation and Rainfed Conditions.
OsSIZ1	Os05g0125000	LOC_Os05g03430	tolerance	Overexpression of the rice gene OsSIZ1 in Arabidopsis improves drought-, heat-, and salt-tolerance simultaneously.	In this report, it is demonstrated that over-expression of the rice gene OsSIZ1 in Arabidopsis leads to increased tolerance to multiple abiotic stresses
OsSIZ1	Os05g0125000	LOC_Os05g03430	tolerance	Overexpression of the rice gene OsSIZ1 in Arabidopsis improves drought-, heat-, and salt-tolerance simultaneously.	These results demonstrate that the rice gene OsSIZ1 has a great potential to be used for improving crop's tolerance to several abiotic stresses
OsSIZ1	Os05g0125000	LOC_Os05g03430	abiotic stress	Overexpression of the rice gene OsSIZ1 in Arabidopsis improves drought-, heat-, and salt-tolerance simultaneously.	In this report, it is demonstrated that over-expression of the rice gene OsSIZ1 in Arabidopsis leads to increased tolerance to multiple abiotic stresses
OsSIZ1	Os05g0125000	LOC_Os05g03430	abiotic stress	Overexpression of the rice gene OsSIZ1 in Arabidopsis improves drought-, heat-, and salt-tolerance simultaneously.	These results demonstrate that the rice gene OsSIZ1 has a great potential to be used for improving crop's tolerance to several abiotic stresses
OsSIZ1	Os05g0125000	LOC_Os05g03430	biotic stress	Overexpression of the rice gene OsSIZ1 in Arabidopsis improves drought-, heat-, and salt-tolerance simultaneously.	In this report, it is demonstrated that over-expression of the rice gene OsSIZ1 in Arabidopsis leads to increased tolerance to multiple abiotic stresses
OsSIZ1	Os05g0125000	LOC_Os05g03430	biotic stress	Overexpression of the rice gene OsSIZ1 in Arabidopsis improves drought-, heat-, and salt-tolerance simultaneously.	These results demonstrate that the rice gene OsSIZ1 has a great potential to be used for improving crop's tolerance to several abiotic stresses
OsSIZ1	Os05g0125000	LOC_Os05g03430	salt	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	Previous studies showed that overexpression of the Arabidopsis vacuolar H+-pyrophosphatase gene AVP1 increases salt and water deficit stress tolerance and overexpression of the rice SUMO E3 ligase gene OsSIZ1 improves heat and water deficit stress tolerance in transgenic plants
OsSIZ1	Os05g0125000	LOC_Os05g03430	tolerance	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.
OsSIZ1	Os05g0125000	LOC_Os05g03430	tolerance	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	Previous studies showed that overexpression of the Arabidopsis vacuolar H+-pyrophosphatase gene AVP1 increases salt and water deficit stress tolerance and overexpression of the rice SUMO E3 ligase gene OsSIZ1 improves heat and water deficit stress tolerance in transgenic plants
OsSIZ1	Os05g0125000	LOC_Os05g03430	tolerance	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	In this report, the effects of co-overexpression of AVP1 and OsSIZ1 in Arabidopsis on abiotic stress tolerance were studied
OsSIZ1	Os05g0125000	LOC_Os05g03430	abiotic stress	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	In this report, the effects of co-overexpression of AVP1 and OsSIZ1 in Arabidopsis on abiotic stress tolerance were studied
OsSIZ1	Os05g0125000	LOC_Os05g03430	stress	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	Previous studies showed that overexpression of the Arabidopsis vacuolar H+-pyrophosphatase gene AVP1 increases salt and water deficit stress tolerance and overexpression of the rice SUMO E3 ligase gene OsSIZ1 improves heat and water deficit stress tolerance in transgenic plants
OsSIZ1	Os05g0125000	LOC_Os05g03430	stress	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	In this report, the effects of co-overexpression of AVP1 and OsSIZ1 in Arabidopsis on abiotic stress tolerance were studied
OsSIZ1	Os05g0125000	LOC_Os05g03430	biotic stress	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	In this report, the effects of co-overexpression of AVP1 and OsSIZ1 in Arabidopsis on abiotic stress tolerance were studied
OsSIZ1	Os05g0125000	LOC_Os05g03430	stress tolerance	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	Previous studies showed that overexpression of the Arabidopsis vacuolar H+-pyrophosphatase gene AVP1 increases salt and water deficit stress tolerance and overexpression of the rice SUMO E3 ligase gene OsSIZ1 improves heat and water deficit stress tolerance in transgenic plants
OsSIZ1	Os05g0125000	LOC_Os05g03430	stress tolerance	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	In this report, the effects of co-overexpression of AVP1 and OsSIZ1 in Arabidopsis on abiotic stress tolerance were studied
OsSIZ2	Os03g0719100	LOC_Os03g50980	seed germination	Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice	In addition, ABA-hypersensitivity of siz1-2 seed germination was partially suppressed by OsSIZ1 and OsSIZ2
OsSIZ2	Os03g0719100	LOC_Os03g50980	seed	Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice	In addition, ABA-hypersensitivity of siz1-2 seed germination was partially suppressed by OsSIZ1 and OsSIZ2
OsSIZ2	Os03g0719100	LOC_Os03g50980	leaf	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	Although the relative expression of OsSIZ2 was spatiotemporally regulated, it showed constitutive expression in root and leaf blade irrespective of Pi regime
OsSIZ2	Os03g0719100	LOC_Os03g50980	root	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	Although the relative expression of OsSIZ2 was spatiotemporally regulated, it showed constitutive expression in root and leaf blade irrespective of Pi regime
OsSIZ2	Os03g0719100	LOC_Os03g50980	growth	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	Further, attenuation in the expression levels of OsSIZ2 in the roots of ossiz1 and relatively similar trend of the effects of the mutation in OsSIZ1 and OsSIZ2 on growth and development and total P concentration in different tissues suggested a prevalence of partial functional redundancy between these paralogs
OsSIZ2	Os03g0719100	LOC_Os03g50980	development	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	Further, attenuation in the expression levels of OsSIZ2 in the roots of ossiz1 and relatively similar trend of the effects of the mutation in OsSIZ1 and OsSIZ2 on growth and development and total P concentration in different tissues suggested a prevalence of partial functional redundancy between these paralogs
OsSIZ2	Os03g0719100	LOC_Os03g50980	homeostasis	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.
OsSIZ2	Os03g0719100	LOC_Os03g50980	Pi	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	Although the relative expression of OsSIZ2 was spatiotemporally regulated, it showed constitutive expression in root and leaf blade irrespective of Pi regime
OsSIZ2	Os03g0719100	LOC_Os03g50980	phosphate	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.
OsSIZ2	Os03g0719100	LOC_Os03g50980	pi	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	Although the relative expression of OsSIZ2 was spatiotemporally regulated, it showed constitutive expression in root and leaf blade irrespective of Pi regime
OsSIZ2	Os03g0719100	LOC_Os03g50980	phosphate homeostasis	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.
OsSIZ2	Os03g0719100	LOC_Os03g50980	nitrogen	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.
OsSIZ2	Os03g0719100	LOC_Os03g50980	root	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	Under -N condition, total N concentration in the root of OsSIZ2-Ri plants and ossiz2 was significantly increased compared with wild type
OsSIZ2	Os03g0719100	LOC_Os03g50980	pollen	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	In addition, ossiz2 indicated obvious defects in anther dehiscence, pollen fertility, and seed set percentage
OsSIZ2	Os03g0719100	LOC_Os03g50980	anther	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	In addition, ossiz2 indicated obvious defects in anther dehiscence, pollen fertility, and seed set percentage
OsSIZ2	Os03g0719100	LOC_Os03g50980	anther	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	Overall, these results suggest pivotal roles of OsSIZ2 in regulating homeostasis of N and different agronomic traits including anther and seed development
OsSIZ2	Os03g0719100	LOC_Os03g50980	development	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	Overall, these results suggest pivotal roles of OsSIZ2 in regulating homeostasis of N and different agronomic traits including anther and seed development
OsSIZ2	Os03g0719100	LOC_Os03g50980	seed	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	In addition, ossiz2 indicated obvious defects in anther dehiscence, pollen fertility, and seed set percentage
OsSIZ2	Os03g0719100	LOC_Os03g50980	seed	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	Overall, these results suggest pivotal roles of OsSIZ2 in regulating homeostasis of N and different agronomic traits including anther and seed development
OsSIZ2	Os03g0719100	LOC_Os03g50980	reproductive	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.
OsSIZ2	Os03g0719100	LOC_Os03g50980	homeostasis	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.
OsSIZ2	Os03g0719100	LOC_Os03g50980	homeostasis	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	Moreover, qRT-PCR analyses revealed that several genes involved in the maintenance of N homeostasis were altered in OsSIZ2 mutants
OsSIZ2	Os03g0719100	LOC_Os03g50980	homeostasis	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	Overall, these results suggest pivotal roles of OsSIZ2 in regulating homeostasis of N and different agronomic traits including anther and seed development
OsSIZ2	Os03g0719100	LOC_Os03g50980	seed development	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	Overall, these results suggest pivotal roles of OsSIZ2 in regulating homeostasis of N and different agronomic traits including anther and seed development
OsSK1	Os02g0749300	LOC_Os02g51410	panicle	Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins	Northern blot analysis revealed that the expression of OsSK1 and OsSK2 was induced in rice calli by treatment with the elicitor N-acetylchitoheptaose, and that expression of OsSK1 and OsSK3 was up-regulated specifically during the heading stage of panicle development
OsSK2	Os06g0225800	LOC_Os06g12150	panicle	Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins	Northern blot analysis revealed that the expression of OsSK1 and OsSK2 was induced in rice calli by treatment with the elicitor N-acetylchitoheptaose, and that expression of OsSK1 and OsSK3 was up-regulated specifically during the heading stage of panicle development
OsSK3	Os04g0640600	LOC_Os04g54800	panicle	Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins	Northern blot analysis revealed that the expression of OsSK1 and OsSK2 was induced in rice calli by treatment with the elicitor N-acetylchitoheptaose, and that expression of OsSK1 and OsSK3 was up-regulated specifically during the heading stage of panicle development
OsSKIPa	Os02g0759800	LOC_Os02g52250	salt	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	Transgenic rice overexpressing OsSKIPa exhibited significantly improved growth performance in the medium containing stress agents (abscisic acid, salt, or mannitol) and drought resistance at both the seedling and reproductive stages
OsSKIPa	Os02g0759800	LOC_Os02g52250	salt stress	OsDIS1-mediated stress response pathway in rice	Here we also show that OsDIS1 interacts with OsSKIPa, a drought and salt stress positive regulator in rice
OsSKIPa	Os02g0759800	LOC_Os02g52250	phytohormone	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	The expression OsSKIPa is induced by various abiotic stresses and phytohormone treatments
OsSKIPa	Os02g0759800	LOC_Os02g52250	abiotic stress	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	The expression OsSKIPa is induced by various abiotic stresses and phytohormone treatments
OsSKIPa	Os02g0759800	LOC_Os02g52250	drought	OsDIS1-mediated stress response pathway in rice	Here we also show that OsDIS1 interacts with OsSKIPa, a drought and salt stress positive regulator in rice
OsSKIPa	Os02g0759800	LOC_Os02g52250	seedling	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	Transgenic rice overexpressing OsSKIPa exhibited significantly improved growth performance in the medium containing stress agents (abscisic acid, salt, or mannitol) and drought resistance at both the seedling and reproductive stages
OsSKIPa	Os02g0759800	LOC_Os02g52250	reproductive	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	Transgenic rice overexpressing OsSKIPa exhibited significantly improved growth performance in the medium containing stress agents (abscisic acid, salt, or mannitol) and drought resistance at both the seedling and reproductive stages
OsSKIPa	Os02g0759800	LOC_Os02g52250	salt	OsDIS1-mediated stress response pathway in rice	Here we also show that OsDIS1 interacts with OsSKIPa, a drought and salt stress positive regulator in rice
OsSKIPa	Os02g0759800	LOC_Os02g52250	growth	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	Suppression of OsSKIPa in rice resulted in growth arrest and reduced cell viability
OsSKIPa	Os02g0759800	LOC_Os02g52250	growth	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	Transgenic rice overexpressing OsSKIPa exhibited significantly improved growth performance in the medium containing stress agents (abscisic acid, salt, or mannitol) and drought resistance at both the seedling and reproductive stages
OsSKIPa	Os02g0759800	LOC_Os02g52250	drought resistance	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	Transgenic rice overexpressing OsSKIPa exhibited significantly improved growth performance in the medium containing stress agents (abscisic acid, salt, or mannitol) and drought resistance at both the seedling and reproductive stages
OsSKIPa	Os02g0759800	LOC_Os02g52250	drought	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	Transgenic rice overexpressing OsSKIPa exhibited significantly improved growth performance in the medium containing stress agents (abscisic acid, salt, or mannitol) and drought resistance at both the seedling and reproductive stages
OsSKIPa	Os02g0759800	LOC_Os02g52250	drought	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance	The OsSKIPa-overexpressing rice showed significantly increased reactive oxygen species-scavenging ability and transcript levels of many stress-related genes, including SNAC1 and rice homologs of CBF2, PP2C, and RD22, under drought stress conditions
OsSKL2	Os10g0577700	LOC_Os10g42700	drought	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.
OsSKL2	Os10g0577700	LOC_Os10g42700	drought	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 OsSKL2 was localized in the chloroplast, and its transcripts were significantly induced by drought and salinity stress as well as H(2)O(2) and abscisic acid (ABA) treatment
OsSKL2	Os10g0577700	LOC_Os10g42700	drought	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Meanwhile, overexpression of OsSKL2 in rice increased tolerance to salinity, drought and oxidative stress by increasing antioxidant enzyme activity, and reducing levels of H(2)O(2), malondialdehyde, and relative electrolyte leakage
OsSKL2	Os10g0577700	LOC_Os10g42700	drought	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Moreover, OsSKL2 was found to physically interact with OsASR1, a well-known chaperone-like protein, which also exhibited positive roles in salt and drought tolerance
OsSKL2	Os10g0577700	LOC_Os10g42700	drought	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Taken together, these findings suggest that OsSKL2 together with OsASR1 act as important regulatory factors that confer salt and drought tolerance in rice via ROS scavenging
OsSKL2	Os10g0577700	LOC_Os10g42700	stress	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 OsSKL2 was localized in the chloroplast, and its transcripts were significantly induced by drought and salinity stress as well as H(2)O(2) and abscisic acid (ABA) treatment
OsSKL2	Os10g0577700	LOC_Os10g42700	stress	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Meanwhile, overexpression of OsSKL2 in rice increased tolerance to salinity, drought and oxidative stress by increasing antioxidant enzyme activity, and reducing levels of H(2)O(2), malondialdehyde, and relative electrolyte leakage
OsSKL2	Os10g0577700	LOC_Os10g42700	stress	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 In contrast, RNAi-induced suppression of OsSKL2 increased sensitivity to stress treatment
OsSKL2	Os10g0577700	LOC_Os10g42700	oxidative stress	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Meanwhile, overexpression of OsSKL2 in rice increased tolerance to salinity, drought and oxidative stress by increasing antioxidant enzyme activity, and reducing levels of H(2)O(2), malondialdehyde, and relative electrolyte leakage
OsSKL2	Os10g0577700	LOC_Os10g42700	salinity	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 OsSKL2 was localized in the chloroplast, and its transcripts were significantly induced by drought and salinity stress as well as H(2)O(2) and abscisic acid (ABA) treatment
OsSKL2	Os10g0577700	LOC_Os10g42700	salt	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.
OsSKL2	Os10g0577700	LOC_Os10g42700	salt	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Moreover, OsSKL2 was found to physically interact with OsASR1, a well-known chaperone-like protein, which also exhibited positive roles in salt and drought tolerance
OsSKL2	Os10g0577700	LOC_Os10g42700	salt	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Taken together, these findings suggest that OsSKL2 together with OsASR1 act as important regulatory factors that confer salt and drought tolerance in rice via ROS scavenging
OsSKL2	Os10g0577700	LOC_Os10g42700	tolerance	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.
OsSKL2	Os10g0577700	LOC_Os10g42700	tolerance	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Meanwhile, overexpression of OsSKL2 in rice increased tolerance to salinity, drought and oxidative stress by increasing antioxidant enzyme activity, and reducing levels of H(2)O(2), malondialdehyde, and relative electrolyte leakage
OsSKL2	Os10g0577700	LOC_Os10g42700	tolerance	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Moreover, OsSKL2 was found to physically interact with OsASR1, a well-known chaperone-like protein, which also exhibited positive roles in salt and drought tolerance
OsSKL2	Os10g0577700	LOC_Os10g42700	tolerance	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Taken together, these findings suggest that OsSKL2 together with OsASR1 act as important regulatory factors that confer salt and drought tolerance in rice via ROS scavenging
OsSKL2	Os10g0577700	LOC_Os10g42700	oxidative	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Meanwhile, overexpression of OsSKL2 in rice increased tolerance to salinity, drought and oxidative stress by increasing antioxidant enzyme activity, and reducing levels of H(2)O(2), malondialdehyde, and relative electrolyte leakage
OsSKL2	Os10g0577700	LOC_Os10g42700	drought tolerance	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Moreover, OsSKL2 was found to physically interact with OsASR1, a well-known chaperone-like protein, which also exhibited positive roles in salt and drought tolerance
OsSKL2	Os10g0577700	LOC_Os10g42700	drought tolerance	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Taken together, these findings suggest that OsSKL2 together with OsASR1 act as important regulatory factors that confer salt and drought tolerance in rice via ROS scavenging
OsSKL2	Os10g0577700	LOC_Os10g42700	salt tolerance	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.
OsSKL2	Os10g0577700	LOC_Os10g42700	salinity stress	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 OsSKL2 was localized in the chloroplast, and its transcripts were significantly induced by drought and salinity stress as well as H(2)O(2) and abscisic acid (ABA) treatment
OsSKL2	Os10g0577700	LOC_Os10g42700	abscisic acid	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 OsSKL2 was localized in the chloroplast, and its transcripts were significantly induced by drought and salinity stress as well as H(2)O(2) and abscisic acid (ABA) treatment
OsSKL2	Os10g0577700	LOC_Os10g42700	reactive oxygen species	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Interestingly, overexpression of OsSKL2 also increased sensitivity to exogenous ABA, with an increase in reactive oxygen species (ROS) accumulation
OsSKL2	Os10g0577700	LOC_Os10g42700	drought and oxidative stress	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	 Meanwhile, overexpression of OsSKL2 in rice increased tolerance to salinity, drought and oxidative stress by increasing antioxidant enzyme activity, and reducing levels of H(2)O(2), malondialdehyde, and relative electrolyte leakage
OsSKOR	Os04g0445000	LOC_Os04g36740	root	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice	qRTPCR and promoter-GUS analysis showed that OsSKOR is expressed in root vascular tissues, flower, and seed scutellum
OsSKOR	Os04g0445000	LOC_Os04g36740	seed	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice	qRTPCR and promoter-GUS analysis showed that OsSKOR is expressed in root vascular tissues, flower, and seed scutellum
OsSKOR	Os04g0445000	LOC_Os04g36740	potassium	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	chloroplast	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	The ell1 mutant exhibited decreased chlorophyll contents, serious chloroplast degradation, up-regulated expression of chloroplast degradation-related genes, and attenuated photosynthetic protein activity, indicating that ELL1 is involved in chloroplast development
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	chloroplast	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	Our findings revealed that ELL1 affects chloroplast development or function, and that loss of ELL1 function induces ROS accumulation and lesion formation in rice
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	temperature	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	Additionally, lesion initiation in the ell1 mutant was light dependent and temperature sensitive
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	development	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	The ell1 mutant exhibited decreased chlorophyll contents, serious chloroplast degradation, up-regulated expression of chloroplast degradation-related genes, and attenuated photosynthetic protein activity, indicating that ELL1 is involved in chloroplast development
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	development	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	Our findings revealed that ELL1 affects chloroplast development or function, and that loss of ELL1 function induces ROS accumulation and lesion formation in rice
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	cell death	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	RNA-seq analysis showed that genes related to oxygen binding were differentially expressed in ell1 and wild-type plants; histochemical and paraffin sectioning results displayed that hydrogen peroxide (H2 O2 ) and callose accumulated in the ell1 leaves, and the cell structure around the lesion was severely damaged, which indicated that reactive oxygen species (ROS) accumulated and cell death occurred in the mutant
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	cell death	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	TUNEL and comet experiments revealed that severe DNA degradation and abnormal PCD occurred in the mutant, which implied that excessive ROS accumulation may induce DNA damage and ROS-mediated cell death in the ell1 mutant
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	chloroplast development	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	The ell1 mutant exhibited decreased chlorophyll contents, serious chloroplast degradation, up-regulated expression of chloroplast degradation-related genes, and attenuated photosynthetic protein activity, indicating that ELL1 is involved in chloroplast development
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	chloroplast development	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	Our findings revealed that ELL1 affects chloroplast development or function, and that loss of ELL1 function induces ROS accumulation and lesion formation in rice
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	chlorophyll content	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	The ell1 mutant exhibited decreased chlorophyll contents, serious chloroplast degradation, up-regulated expression of chloroplast degradation-related genes, and attenuated photosynthetic protein activity, indicating that ELL1 is involved in chloroplast development
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	reactive oxygen species	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	RNA-seq analysis showed that genes related to oxygen binding were differentially expressed in ell1 and wild-type plants; histochemical and paraffin sectioning results displayed that hydrogen peroxide (H2 O2 ) and callose accumulated in the ell1 leaves, and the cell structure around the lesion was severely damaged, which indicated that reactive oxygen species (ROS) accumulated and cell death occurred in the mutant
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	PCD	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	TUNEL and comet experiments revealed that severe DNA degradation and abnormal PCD occurred in the mutant, which implied that excessive ROS accumulation may induce DNA damage and ROS-mediated cell death in the ell1 mutant
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	lesion	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	RNA-seq analysis showed that genes related to oxygen binding were differentially expressed in ell1 and wild-type plants; histochemical and paraffin sectioning results displayed that hydrogen peroxide (H2 O2 ) and callose accumulated in the ell1 leaves, and the cell structure around the lesion was severely damaged, which indicated that reactive oxygen species (ROS) accumulated and cell death occurred in the mutant
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	lesion	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	Additionally, lesion initiation in the ell1 mutant was light dependent and temperature sensitive
OsSL|LLM1|ELL1	Os12g0268000	LOC_Os12g16720	lesion	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice	Our findings revealed that ELL1 affects chloroplast development or function, and that loss of ELL1 function induces ROS accumulation and lesion formation in rice
OsSLA1	Os04g0487200	LOC_Os04g41030	leaf	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.
OsSLA1	Os04g0487200	LOC_Os04g41030	leaf	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 Here, we demonstrate that the leucine-rich repeat receptor-like kinase OsSLA1 plays an important role in leaf angle regulation in rice (Oryza sativa)
OsSLA1	Os04g0487200	LOC_Os04g41030	leaf	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 OsSLA1 mutant plants exhibited a small leaf angle phenotype due to changes of adaxial cells in the lamina joint
OsSLA1	Os04g0487200	LOC_Os04g41030	leaf	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 These results demonstrate that OsSLA1 regulates leaf angle formation via positive regulation of BR signaling by enhancing the interaction of OsBRI1 with OsBAK1
OsSLA1	Os04g0487200	LOC_Os04g41030	Kinase	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 Here, we demonstrate that the leucine-rich repeat receptor-like kinase OsSLA1 plays an important role in leaf angle regulation in rice (Oryza sativa)
OsSLA1	Os04g0487200	LOC_Os04g41030	Kinase	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 In addition, phosphorylation experiments revealed that OsSLA1 does not possess kinase activity, but that it can be phosphorylated by OsBRI1 in vitro
OsSLA1	Os04g0487200	LOC_Os04g41030	brassinosteroid	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 The OsSLA1 mutant plants were insensitive to exogenous epibrassinolide (eBL) and showed upregulated expression of DWARF and CPD, but downregulated expression of BU1, BUL1, and ILI1, indicating that brassinosteroid (BR) signal transduction was blocked
OsSLA1	Os04g0487200	LOC_Os04g41030	BR	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 These results demonstrate that OsSLA1 regulates leaf angle formation via positive regulation of BR signaling by enhancing the interaction of OsBRI1 with OsBAK1
OsSLA1	Os04g0487200	LOC_Os04g41030	Brassinosteroid	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 The OsSLA1 mutant plants were insensitive to exogenous epibrassinolide (eBL) and showed upregulated expression of DWARF and CPD, but downregulated expression of BU1, BUL1, and ILI1, indicating that brassinosteroid (BR) signal transduction was blocked
OsSLA1	Os04g0487200	LOC_Os04g41030	BR signaling	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 These results demonstrate that OsSLA1 regulates leaf angle formation via positive regulation of BR signaling by enhancing the interaction of OsBRI1 with OsBAK1
OsSLA1	Os04g0487200	LOC_Os04g41030	lamina	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 OsSLA1 mutant plants exhibited a small leaf angle phenotype due to changes of adaxial cells in the lamina joint
OsSLA1	Os04g0487200	LOC_Os04g41030	lamina	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 GUS staining revealed that OsSLA1 was highly expressed in adaxial cells of the lamina joint
OsSLA1	Os04g0487200	LOC_Os04g41030	kinase	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 Here, we demonstrate that the leucine-rich repeat receptor-like kinase OsSLA1 plays an important role in leaf angle regulation in rice (Oryza sativa)
OsSLA1	Os04g0487200	LOC_Os04g41030	kinase	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 In addition, phosphorylation experiments revealed that OsSLA1 does not possess kinase activity, but that it can be phosphorylated by OsBRI1 in vitro
OsSLA1	Os04g0487200	LOC_Os04g41030	dwarf	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 The OsSLA1 mutant plants were insensitive to exogenous epibrassinolide (eBL) and showed upregulated expression of DWARF and CPD, but downregulated expression of BU1, BUL1, and ILI1, indicating that brassinosteroid (BR) signal transduction was blocked
OsSLA1	Os04g0487200	LOC_Os04g41030	signal transduction	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 The OsSLA1 mutant plants were insensitive to exogenous epibrassinolide (eBL) and showed upregulated expression of DWARF and CPD, but downregulated expression of BU1, BUL1, and ILI1, indicating that brassinosteroid (BR) signal transduction was blocked
OsSLA1	Os04g0487200	LOC_Os04g41030	plasma membrane	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 Fluorescence microscopy showed that OsSLA1 was localized to the plasma membrane and nearby periplasmic vesicles
OsSLA1	Os04g0487200	LOC_Os04g41030	leaf angle	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.
OsSLA1	Os04g0487200	LOC_Os04g41030	leaf angle	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 Here, we demonstrate that the leucine-rich repeat receptor-like kinase OsSLA1 plays an important role in leaf angle regulation in rice (Oryza sativa)
OsSLA1	Os04g0487200	LOC_Os04g41030	leaf angle	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 OsSLA1 mutant plants exhibited a small leaf angle phenotype due to changes of adaxial cells in the lamina joint
OsSLA1	Os04g0487200	LOC_Os04g41030	leaf angle	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 These results demonstrate that OsSLA1 regulates leaf angle formation via positive regulation of BR signaling by enhancing the interaction of OsBRI1 with OsBAK1
OsSLA1	Os04g0487200	LOC_Os04g41030	 BR 	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 These results demonstrate that OsSLA1 regulates leaf angle formation via positive regulation of BR signaling by enhancing the interaction of OsBRI1 with OsBAK1
OsSLA1	Os04g0487200	LOC_Os04g41030	lamina joint	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 OsSLA1 mutant plants exhibited a small leaf angle phenotype due to changes of adaxial cells in the lamina joint
OsSLA1	Os04g0487200	LOC_Os04g41030	lamina joint	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	 GUS staining revealed that OsSLA1 was highly expressed in adaxial cells of the lamina joint
OsSLC1	Os06g0710800	LOC_Os06g49670	chloroplast	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.
OsSLC1	Os06g0710800	LOC_Os06g49670	chloroplast	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.	Loss-of-function of OsSLC1 affected the intron splicing of multiple group II introns, and especially precluded the intron splicing of rps16, and resulted in significant increase in the transcript levels of 3 chloroplast ribosomal RNAs and 16 chloroplast development-related and photosynthesis-related genes, and in significant reduction in the transcript levels of 1 chloroplast ribosomal RNAs and 2 chloroplast development-related and photosynthesis-related genes
OsSLC1	Os06g0710800	LOC_Os06g49670	seedling	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.
OsSLC1	Os06g0710800	LOC_Os06g49670	development	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.
OsSLC1	Os06g0710800	LOC_Os06g49670	map-based cloning	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.	Map-based cloning of OsSLC1 revealed that a single base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant, which caused a premature stop codon
OsSLC1	Os06g0710800	LOC_Os06g49670	R protein	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.	OsSLC1 was preferentially expressed in green leaves, and encoded a chloroplast-localized PPR protein harboring 12 PPR motifs
OsSLC1	Os06g0710800	LOC_Os06g49670	chloroplast development	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.
OsSLC1	Os06g0710800	LOC_Os06g49670	chloroplast development	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.	Loss-of-function of OsSLC1 affected the intron splicing of multiple group II introns, and especially precluded the intron splicing of rps16, and resulted in significant increase in the transcript levels of 3 chloroplast ribosomal RNAs and 16 chloroplast development-related and photosynthesis-related genes, and in significant reduction in the transcript levels of 1 chloroplast ribosomal RNAs and 2 chloroplast development-related and photosynthesis-related genes
OsSLK	Os06g0126000	LOC_Os06g03600	root	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 Collectively, our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation, and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice
OsSLK	Os06g0126000	LOC_Os06g03600	nucleus	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 We show that SHPR interacts with Oryza sativa SEUSS-LIKE (OsSLK) in the nucleus and is required for OsSLK polyubiquitination and degradation by the ubiquitin 26S-proteasome system (UPS)
OsSLK	Os06g0126000	LOC_Os06g03600	meristem	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 Collectively, our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation, and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice
OsSLK	Os06g0126000	LOC_Os06g03600	Ubiquitin	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 We show that SHPR interacts with Oryza sativa SEUSS-LIKE (OsSLK) in the nucleus and is required for OsSLK polyubiquitination and degradation by the ubiquitin 26S-proteasome system (UPS)
OsSLK	Os06g0126000	LOC_Os06g03600	Ubiquitin	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 Collectively, our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation, and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice
OsSLK	Os06g0126000	LOC_Os06g03600	root meristem	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 Collectively, our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation, and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice
OsSLRL2	Os05g0574900	LOC_Os05g49930	embryo	Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis plants	So we could determine that OsSLRL2 specially expressed in the developing embryo
OsSMAX1	Os08g0250900	LOC_Os08g15230	shoot	Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness	Overexpression of OsSMAX1 promoted mesocotyl elongation in the dark, whereas knockout of OsSMAX1 suppressed the elongated-mesocotyl phenotypes of d14l and d3 but had little effect on their shoot branching phenotype
OsSMAX1	Os08g0250900	LOC_Os08g15230	nucleus	Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness	OsSMAX1 localizes in nucleus and interacts with TOPLESS-RELATED PROTEINs (TPRs), regulating downstream gene expression
OsSMAX1	Os08g0250900	LOC_Os08g15230	branching	Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness	Overexpression of OsSMAX1 promoted mesocotyl elongation in the dark, whereas knockout of OsSMAX1 suppressed the elongated-mesocotyl phenotypes of d14l and d3 but had little effect on their shoot branching phenotype
OsSMCP1	Os07g0108400	LOC_Os07g01770	salt tolerance	Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis	Retransformation of wild-type Arabidopsis revealed that OsSMCP1 is responsible for conferring the salt tolerance
OsSMCP1	Os07g0108400	LOC_Os07g01770	salt	Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis	Retransformation of wild-type Arabidopsis revealed that OsSMCP1 is responsible for conferring the salt tolerance
OsSMCP1	Os07g0108400	LOC_Os07g01770	salinity	Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis	It is particularly interesting that R07047 and newly constructed OsSMCP1-overexpressing Arabidopsis showed enhanced tolerance not only to high salinity but also to osmotic, dehydrative, and oxidative stresses
OsSMCP1	Os07g0108400	LOC_Os07g01770	biotic stress	Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis	Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis
OsSMCP1	Os07g0108400	LOC_Os07g01770	breeding	Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis	For molecular breeding to improve the tolerance of crops against environmental stress, OsSMCP1 is a promising candidate
OsSMCP1	Os07g0108400	LOC_Os07g01770	oxidative	Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis	It is particularly interesting that R07047 and newly constructed OsSMCP1-overexpressing Arabidopsis showed enhanced tolerance not only to high salinity but also to osmotic, dehydrative, and oxidative stresses
OsSNAP32	Os02g0437200	LOC_Os02g24080	culm	Molecular cloning and characterization of a novel SNAP25-type protein gene OsSNAP32 in rice (Oryza sativa L.)	Semi-quantitative RT-PCR assay showed that the OsSNAP32 is highly expressed in leaves and culms, and low in roots of rice, while hardly detected in immature spikes and flowering spikes
OsSNAP32	Os02g0437200	LOC_Os02g24080	blast	Molecular cloning and characterization of a novel SNAP25-type protein gene OsSNAP32 in rice (Oryza sativa L.)	The expression of OsSNAP32 was significantly activated in rice seedlings treated with H2O2, PEG6000, and low temperature or after inoculation with rice blast (Magnaporthe grisea strain Hoku 1)
OsSNAP32	Os02g0437200	LOC_Os02g24080	root	Molecular cloning and characterization of a novel SNAP25-type protein gene OsSNAP32 in rice (Oryza sativa L.)	Semi-quantitative RT-PCR assay showed that the OsSNAP32 is highly expressed in leaves and culms, and low in roots of rice, while hardly detected in immature spikes and flowering spikes
OsSNAP32	Os02g0437200	LOC_Os02g24080	seedling	Molecular cloning and characterization of a novel SNAP25-type protein gene OsSNAP32 in rice (Oryza sativa L.)	The expression of OsSNAP32 was significantly activated in rice seedlings treated with H2O2, PEG6000, and low temperature or after inoculation with rice blast (Magnaporthe grisea strain Hoku 1)
OsSNAP32	Os02g0437200	LOC_Os02g24080	temperature	Molecular cloning and characterization of a novel SNAP25-type protein gene OsSNAP32 in rice (Oryza sativa L.)	The expression of OsSNAP32 was significantly activated in rice seedlings treated with H2O2, PEG6000, and low temperature or after inoculation with rice blast (Magnaporthe grisea strain Hoku 1)
OsSNAP32	Os02g0437200	LOC_Os02g24080	flower	Molecular cloning and characterization of a novel SNAP25-type protein gene OsSNAP32 in rice (Oryza sativa L.)	Semi-quantitative RT-PCR assay showed that the OsSNAP32 is highly expressed in leaves and culms, and low in roots of rice, while hardly detected in immature spikes and flowering spikes
OsSNAT1	Os05g0481000	LOC_Os05g40260	melatonin	Cloning and characterization of the serotonin N-acetyltransferase-2 gene (SNAT2) in rice (Oryza sativa).	The OsSNAT1 and OsSNAT2 transcripts were similarly suppressed in rice leaves during the melatonin induction after cadmium treatment
OsSNAT1	Os05g0481000	LOC_Os05g40260	cadmium	Cloning and characterization of the serotonin N-acetyltransferase-2 gene (SNAT2) in rice (Oryza sativa).	The OsSNAT1 and OsSNAT2 transcripts were similarly suppressed in rice leaves during the melatonin induction after cadmium treatment
OsSNAT1	Os05g0481000	LOC_Os05g40260	seedlings	Overexpression of rice serotonin N-acetyltransferase1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.	In contrast to tomato, melatonin synthesis in rice seedlings was not induced by selenium and OsSNAT1 transgenic rice plants did not show tolerance to selenium
OsSNAT1	Os05g0481000	LOC_Os05g40260	panicle	Overexpression of rice serotonin N-acetyltransferase1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.	T2 homozygous OsSNAT1 transgenic rice plants exhibited increased grain yield due to increased panicle number per plant under paddy field conditions
OsSNAT1	Os05g0481000	LOC_Os05g40260	grain	Overexpression of rice serotonin N-acetyltransferase1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.	T2 homozygous OsSNAT1 transgenic rice plants exhibited increased grain yield due to increased panicle number per plant under paddy field conditions
OsSNAT1	Os05g0481000	LOC_Os05g40260	tolerance	Overexpression of rice serotonin N-acetyltransferase1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.	In contrast to tomato, melatonin synthesis in rice seedlings was not induced by selenium and OsSNAT1 transgenic rice plants did not show tolerance to selenium
OsSNAT1	Os05g0481000	LOC_Os05g40260	grain yield	Overexpression of rice serotonin N-acetyltransferase1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.	T2 homozygous OsSNAT1 transgenic rice plants exhibited increased grain yield due to increased panicle number per plant under paddy field conditions
OsSNAT1	Os05g0481000	LOC_Os05g40260	yield	Overexpression of rice serotonin N-acetyltransferase1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.	T2 homozygous OsSNAT1 transgenic rice plants exhibited increased grain yield due to increased panicle number per plant under paddy field conditions
OsSNAT1	Os05g0481000	LOC_Os05g40260	melatonin	Overexpression of rice serotonin N-acetyltransferase1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.	In contrast to tomato, melatonin synthesis in rice seedlings was not induced by selenium and OsSNAT1 transgenic rice plants did not show tolerance to selenium
OsSNAT2	Os08g0102000	LOC_Os08g01170	temperature	Cloning and characterization of the serotonin N-acetyltransferase-2 gene (SNAT2) in rice (Oryza sativa).	The Km and Vmax values of the purified recombinant OsSNAT2 were 371 μm and 4,700 pmol min(-1) mg(-1) protein, respectively; the enzyme's optimal activity temperature was 45°C
OsSNAT2	Os08g0102000	LOC_Os08g01170	cytoplasm	Cloning and characterization of the serotonin N-acetyltransferase-2 gene (SNAT2) in rice (Oryza sativa).	Confocal microscopy showed that the OsSNAT2 protein was localized to both the cytoplasm and chloroplasts
OsSNAT2	Os08g0102000	LOC_Os08g01170	melatonin	Cloning and characterization of the serotonin N-acetyltransferase-2 gene (SNAT2) in rice (Oryza sativa).	The OsSNAT1 and OsSNAT2 transcripts were similarly suppressed in rice leaves during the melatonin induction after cadmium treatment
OsSNAT2	Os08g0102000	LOC_Os08g01170	cadmium	Cloning and characterization of the serotonin N-acetyltransferase-2 gene (SNAT2) in rice (Oryza sativa).	The OsSNAT1 and OsSNAT2 transcripts were similarly suppressed in rice leaves during the melatonin induction after cadmium treatment
OsSND2	Os05g0563000	LOC_Os05g48850	transcription factor	OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.	In this study, we isolated a NAC family transcription factor (TF), OsSND2 through yeast one-hybrid screening using the secondary wall NAC-binding element (SNBE) on the promoter region of OsMYB61 which is known transcription factor for regulation of SCWs biosynthesis as bait
OsSND2	Os05g0563000	LOC_Os05g48850	cellulose	OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.	Overexpression of OsSND2 resulted in rolled leaf, increased cellulose content and up-regulated expression of SCWs related genes
OsSND2	Os05g0563000	LOC_Os05g48850	cellulose	OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.	The knockout of OsSND2 using CRISPR/Cas9 system decreased cellulose content and down-regulated the expression of SCWs related genes
OsSND2	Os05g0563000	LOC_Os05g48850	cellulose	OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.	OsSND2 was identified as a positive regulator of cellulose biosynthesis in rice
OsSND2	Os05g0563000	LOC_Os05g48850	biomass	OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.	Therefore, the study of the function of OsSND2 can provide a strategy for manipulating plant biomass production
OsSND2	Os05g0563000	LOC_Os05g48850	biomass production	OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.	Therefore, the study of the function of OsSND2 can provide a strategy for manipulating plant biomass production
OsSNDP1	Os10g0122600	LOC_Os10g03400	growth	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice	By performing complementation assays with Atsfh1 mutants, we demonstrated that OsSNDP1 is involved in growth of root hairs
OsSNDP1	Os10g0122600	LOC_Os10g03400	root hair	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice	By performing complementation assays with Atsfh1 mutants, we demonstrated that OsSNDP1 is involved in growth of root hairs
OsSNDP1	Os10g0122600	LOC_Os10g03400	root hair	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice	Cryo-scanning electron microscopy was utilized to further characterize the effect of the Ossndp1 mutation on root hair morphology
OsSNDP1	Os10g0122600	LOC_Os10g03400	root hair	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice
OsSNDP1	Os10g0122600	LOC_Os10g03400	root	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice	By performing complementation assays with Atsfh1 mutants, we demonstrated that OsSNDP1 is involved in growth of root hairs
OsSNDP1	Os10g0122600	LOC_Os10g03400	root	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice	Cryo-scanning electron microscopy was utilized to further characterize the effect of the Ossndp1 mutation on root hair morphology
OsSNDP1	Os10g0122600	LOC_Os10g03400	root	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice
OsSNDP3	Os02g0133200	LOC_Os02g04030	leaf	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 OsSNDP3 encodes Sec14-nodulin domain-containing protein and localizes in the nucleus and the microdomains of the plasma membrane in tobacco leaf epidermis cells
OsSNDP3	Os02g0133200	LOC_Os02g04030	growth	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.
OsSNDP3	Os02g0133200	LOC_Os02g04030	growth	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 Gene Ontology analysis using downregulated genes in ossndp3 indicated that the expression of genes involved in the phosphatidylinositol metabolic process and tip growth was significantly altered in ossndp3
OsSNDP3	Os02g0133200	LOC_Os02g04030	growth	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 OsSNDP3 aids pollen polar tip growth by binding with phosphatidylinositol 4,5-bisphosphate
OsSNDP3	Os02g0133200	LOC_Os02g04030	growth	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 We can better understand the roles of phosphoinositides during pollen tube growth by studying the functions of OsSNDP3 and OsSNDP2
OsSNDP3	Os02g0133200	LOC_Os02g04030	growth	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 And downregulated genes in ossndp3 might be useful targets for future research on polar tip growth
OsSNDP3	Os02g0133200	LOC_Os02g04030	pollen	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.
OsSNDP3	Os02g0133200	LOC_Os02g04030	pollen	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 We discovered that OsSNDP3 plays a significant role in pollen tube germination using CRISPR/Cas9 systems, whereas another pollen-preferential Sec14-nodulin domain-containing protein, OsSNDP2, additively functions with OsSNDP3 during pollen tube germination
OsSNDP3	Os02g0133200	LOC_Os02g04030	pollen	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 OsSNDP3 aids pollen polar tip growth by binding with phosphatidylinositol 4,5-bisphosphate
OsSNDP3	Os02g0133200	LOC_Os02g04030	pollen	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 We can better understand the roles of phosphoinositides during pollen tube growth by studying the functions of OsSNDP3 and OsSNDP2
OsSNDP3	Os02g0133200	LOC_Os02g04030	nucleus	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 OsSNDP3 encodes Sec14-nodulin domain-containing protein and localizes in the nucleus and the microdomains of the plasma membrane in tobacco leaf epidermis cells
OsSNDP3	Os02g0133200	LOC_Os02g04030	plasma membrane	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 OsSNDP3 encodes Sec14-nodulin domain-containing protein and localizes in the nucleus and the microdomains of the plasma membrane in tobacco leaf epidermis cells
OsSNDP3	Os02g0133200	LOC_Os02g04030	epidermis	OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3.	 OsSNDP3 encodes Sec14-nodulin domain-containing protein and localizes in the nucleus and the microdomains of the plasma membrane in tobacco leaf epidermis cells
OsSNF7	Os06g0608500	LOC_Os06g40620	R protein	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The LRD6-6 protein co-localizes with the MVBs marker protein RabF1/ARA6 and interacts with ESCRT-III components OsSNF7 and OsVPS2
OsSNF7.2	Os09g0267600	LOC_Os09g09480	leaf	ESCRT-III component OsSNF7.2 modulates leaf rolling by trafficking and endosomal degradation of auxin biosynthetic enzyme OsYUC8 in rice.	ESCRT-III component OsSNF7.2 modulates leaf rolling by trafficking and endosomal degradation of auxin biosynthetic enzyme OsYUC8 in rice.
OsSNF7.2	Os09g0267600	LOC_Os09g09480	auxin	ESCRT-III component OsSNF7.2 modulates leaf rolling by trafficking and endosomal degradation of auxin biosynthetic enzyme OsYUC8 in rice.	ESCRT-III component OsSNF7.2 modulates leaf rolling by trafficking and endosomal degradation of auxin biosynthetic enzyme OsYUC8 in rice.
OsSNF7.2	Os09g0267600	LOC_Os09g09480	leaf rolling	ESCRT-III component OsSNF7.2 modulates leaf rolling by trafficking and endosomal degradation of auxin biosynthetic enzyme OsYUC8 in rice.	ESCRT-III component OsSNF7.2 modulates leaf rolling by trafficking and endosomal degradation of auxin biosynthetic enzyme OsYUC8 in rice.
OsSOAR1	Os01g0506100	LOC_Os01g32170	salt tolerance	The PPR-Domain Protein SOAR1 Regulates Salt Tolerance in Rice	Further, we overexpressed the homologous gene of SOAR1 in rice, OsSOAR1, and showed that transgenic plants overexpressing OsSOAR1 enhanced salt tolerance at seedling growth stage.
OsSOG1	Os06g0267500	None	DNA repair	SUPPRESSOR OF GAMMA RESPONSE 1 plays rice-specific roles in DNA damage response and repair.	 Based on the analysis of DNA damage susceptibility and the effect on the expression of DNA repair-related genes using these mutants, we have demonstrated that OsSOG1 plays a more important role than OsSGL in controlling the DDR and DNA repair
OsSOG1	Os06g0267500	None	homologous recombination	SUPPRESSOR OF GAMMA RESPONSE 1 plays rice-specific roles in DNA damage response and repair.	 In addition to OsSOG1 or OsSGL knockout mutants, OsSOG1 non-phosphorylatable mutants (OsSOG1-7A) were generated by homologous recombination-mediated gene targeting (GT)
OsSOS2	Os06g0606000	LOC_Os06g40370	drought	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.
OsSOS2	Os06g0606000	LOC_Os06g40370	drought	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Using a combined approach based on physiological, biochemical, anatomical, microscopic, molecular, and agronomic assessment, the evidence presented in this study advocates the role of OsSOS2 in improving salinity and drought tolerance in rice
OsSOS2	Os06g0606000	LOC_Os06g40370	drought	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Keeping in mind the importance of developing crops pants with tolerance to multiple stresses, the present study established the potential of OsSOS2 for biotechnological applications to improve salinity and drought stress tolerance in diverse cultivars of rice
OsSOS2	Os06g0606000	LOC_Os06g40370	salinity	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.
OsSOS2	Os06g0606000	LOC_Os06g40370	salinity	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Using a combined approach based on physiological, biochemical, anatomical, microscopic, molecular, and agronomic assessment, the evidence presented in this study advocates the role of OsSOS2 in improving salinity and drought tolerance in rice
OsSOS2	Os06g0606000	LOC_Os06g40370	salinity	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Keeping in mind the importance of developing crops pants with tolerance to multiple stresses, the present study established the potential of OsSOS2 for biotechnological applications to improve salinity and drought stress tolerance in diverse cultivars of rice
OsSOS2	Os06g0606000	LOC_Os06g40370	tolerance	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.
OsSOS2	Os06g0606000	LOC_Os06g40370	tolerance	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Using a combined approach based on physiological, biochemical, anatomical, microscopic, molecular, and agronomic assessment, the evidence presented in this study advocates the role of OsSOS2 in improving salinity and drought tolerance in rice
OsSOS2	Os06g0606000	LOC_Os06g40370	tolerance	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Keeping in mind the importance of developing crops pants with tolerance to multiple stresses, the present study established the potential of OsSOS2 for biotechnological applications to improve salinity and drought stress tolerance in diverse cultivars of rice
OsSOS2	Os06g0606000	LOC_Os06g40370	drought tolerance	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.
OsSOS2	Os06g0606000	LOC_Os06g40370	drought tolerance	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Using a combined approach based on physiological, biochemical, anatomical, microscopic, molecular, and agronomic assessment, the evidence presented in this study advocates the role of OsSOS2 in improving salinity and drought tolerance in rice
OsSOS2	Os06g0606000	LOC_Os06g40370	stress	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Keeping in mind the importance of developing crops pants with tolerance to multiple stresses, the present study established the potential of OsSOS2 for biotechnological applications to improve salinity and drought stress tolerance in diverse cultivars of rice
OsSOS2	Os06g0606000	LOC_Os06g40370	drought stress	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Keeping in mind the importance of developing crops pants with tolerance to multiple stresses, the present study established the potential of OsSOS2 for biotechnological applications to improve salinity and drought stress tolerance in diverse cultivars of rice
OsSOS2	Os06g0606000	LOC_Os06g40370	stress tolerance	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Keeping in mind the importance of developing crops pants with tolerance to multiple stresses, the present study established the potential of OsSOS2 for biotechnological applications to improve salinity and drought stress tolerance in diverse cultivars of rice
OsSOS2	Os06g0606000	LOC_Os06g40370	drought stress 	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	 Keeping in mind the importance of developing crops pants with tolerance to multiple stresses, the present study established the potential of OsSOS2 for biotechnological applications to improve salinity and drought stress tolerance in diverse cultivars of rice
OsSOT1|STV11	Os11g0505300	LOC_Os11g30910	sulphotransferase	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus
OsSOT1|STV11	Os11g0505300	LOC_Os11g30910	resistance	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus
OsSOT1|STV11	Os11g0505300	LOC_Os11g30910	rice stripe virus	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus
OsSOT1|STV11	Os11g0505300	LOC_Os11g30910	RSV	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus
OsSOT1|STV11	Os11g0505300	LOC_Os11g30910	SA	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus
OsSPCH1	Os06g0526100	LOC_Os06g33450	stomatal	Multiple transcriptional factors control stomata development in rice	These results indicated that OsSPCH1 and OsSPCH2 redundantly controlled stomatal initiation and meristemoid fate and that OsSPCH2 plays a major role in this process.
OsSPCH2	Os02g0257500	LOC_Os02g15760	stomatal	Multiple transcriptional factors control stomata development in rice	Another work indicated that OsSPCH2 controls the initiation of stomatal files in rice (Liu et al., 2009)
OsSPCH2	Os02g0257500	LOC_Os02g15760	stomatal	Multiple transcriptional factors control stomata development in rice	These results indicated that OsSPCH1 and OsSPCH2 redundantly controlled stomatal initiation and meristemoid fate and that OsSPCH2 plays a major role in this process.
OsSPDS1	Os07g0408700	LOC_Os07g22600	chilling	A distinctive class of spermidine synthase is involved in chilling response in rice	In contrast, no such induction of the paralogous OsSPDS1 was observed during the chilling treatment
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	chilling	A distinctive class of spermidine synthase is involved in chilling response in rice	OsSPDS2 mRNA accumulated in roots during long term exposure to chilling temperature (12 degrees C)
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	chilling	A distinctive class of spermidine synthase is involved in chilling response in rice	Data suggested a distinct function of OsSPDS2 in chilling response in rice
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	ABA	A distinctive class of spermidine synthase is involved in chilling response in rice	ABA treatment up-regulated OsSPDS2, whereas salt stress did not change OsSPDS2 levels significantly
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	temperature	A distinctive class of spermidine synthase is involved in chilling response in rice	OsSPDS2 mRNA accumulated in roots during long term exposure to chilling temperature (12 degrees C)
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	salt stress	A distinctive class of spermidine synthase is involved in chilling response in rice	ABA treatment up-regulated OsSPDS2, whereas salt stress did not change OsSPDS2 levels significantly
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	salt	A distinctive class of spermidine synthase is involved in chilling response in rice	ABA treatment up-regulated OsSPDS2, whereas salt stress did not change OsSPDS2 levels significantly
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	root	A distinctive class of spermidine synthase is involved in chilling response in rice	OsSPDS2 mRNA accumulated in roots during long term exposure to chilling temperature (12 degrees C)
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	growth	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	These data suggest that OsSPMS1 affects ethylene synthesis and may regulate seed germination and plant growth by affecting the ACC and ethylene pathways
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	grain	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	grain	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	Phenotypic analysis indicated that OsSPMS1 negatively regulates seed germination, grain size, and grain yield per plant
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	grain	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	Most importantly, an OsSPMS1 knockout mutant showed an increase in grain yield per plant in a high-yield variety, Suken118, suggesting that OsSPMS1 is an important target for yield enhancement in rice
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	seed	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	seed	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	Phenotypic analysis indicated that OsSPMS1 negatively regulates seed germination, grain size, and grain yield per plant
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	seed	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	These data suggest that OsSPMS1 affects ethylene synthesis and may regulate seed germination and plant growth by affecting the ACC and ethylene pathways
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	seed germination	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	seed germination	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	Phenotypic analysis indicated that OsSPMS1 negatively regulates seed germination, grain size, and grain yield per plant
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	seed germination	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	These data suggest that OsSPMS1 affects ethylene synthesis and may regulate seed germination and plant growth by affecting the ACC and ethylene pathways
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	grain yield	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	Phenotypic analysis indicated that OsSPMS1 negatively regulates seed germination, grain size, and grain yield per plant
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	grain yield	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	Most importantly, an OsSPMS1 knockout mutant showed an increase in grain yield per plant in a high-yield variety, Suken118, suggesting that OsSPMS1 is an important target for yield enhancement in rice
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	yield	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	Phenotypic analysis indicated that OsSPMS1 negatively regulates seed germination, grain size, and grain yield per plant
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	yield	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	Most importantly, an OsSPMS1 knockout mutant showed an increase in grain yield per plant in a high-yield variety, Suken118, suggesting that OsSPMS1 is an important target for yield enhancement in rice
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	grain size	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	grain size	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	Phenotypic analysis indicated that OsSPMS1 negatively regulates seed germination, grain size, and grain yield per plant
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	ethylene	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	These data suggest that OsSPMS1 affects ethylene synthesis and may regulate seed germination and plant growth by affecting the ACC and ethylene pathways
OsSPDS2|OsSPMS1	Os06g0528600	LOC_Os06g33710	plant growth	The Spermine Synthase OsSPMS1 Regulates Seed Germination, Grain Size, and Yield.	These data suggest that OsSPMS1 affects ethylene synthesis and may regulate seed germination and plant growth by affecting the ACC and ethylene pathways
OsSPK1	Os03g0328000	LOC_Os03g21080	resistance	Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity.	Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity.
OsSPK1	Os03g0328000	LOC_Os03g21080	blast	Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity.	OsSPK1 contributes to signaling by two disease-resistance genes, Pit and Pia, against the rice blast fungus Magnaporthe oryzae and facilitates OsRac1 activation in vitro and in vivo
OsSPK1	Os03g0328000	LOC_Os03g21080	magnaporthe oryzae	Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity.	OsSPK1 contributes to signaling by two disease-resistance genes, Pit and Pia, against the rice blast fungus Magnaporthe oryzae and facilitates OsRac1 activation in vitro and in vivo
OsSPK1	Os03g0328000	LOC_Os03g21080	immunity	Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity.	Overall, we conclude that OsSPK1 is a direct and key signaling target of Pit-mediated immunity
OsSPK1	Os03g0328000	LOC_Os03g21080	transcription factor	The OsSPK1-OsRac1-RAI1 defense signaling pathway is shared by two distantly related NLR proteins in rice blast resistance.	OsSPK1 activates the small GTPase OsRac1, which in turn transduces the signal to the transcription factor RAC IMMUNITY1 (RAI1)
OsSPK1	Os03g0328000	LOC_Os03g21080	resistance	The OsSPK1-OsRac1-RAI1 defense signaling pathway is shared by two distantly related NLR proteins in rice blast resistance.	We found that in blast resistance mediated by the NLR PIRICULARIA ORYZAE RESISTANCE IN DIGU 3 (PID3), the guanine nucleotide exchange factor OsSPK1 works downstream of PID3
OsSPK1	Os03g0328000	LOC_Os03g21080	blast	The OsSPK1-OsRac1-RAI1 defense signaling pathway is shared by two distantly related NLR proteins in rice blast resistance.	We found that in blast resistance mediated by the NLR PIRICULARIA ORYZAE RESISTANCE IN DIGU 3 (PID3), the guanine nucleotide exchange factor OsSPK1 works downstream of PID3
OsSPK1	Os03g0328000	LOC_Os03g21080	blast resistance	The OsSPK1-OsRac1-RAI1 defense signaling pathway is shared by two distantly related NLR proteins in rice blast resistance.	We found that in blast resistance mediated by the NLR PIRICULARIA ORYZAE RESISTANCE IN DIGU 3 (PID3), the guanine nucleotide exchange factor OsSPK1 works downstream of PID3
OsSPL	Os05g0501800	LOC_Os05g42240	transcription factor	OsSPL regulates meiotic fate acquisition in rice.	OsSPL might form homodimers and interact with TEOSINTE BRANCHED1/CYCLOIDEA/PCF (TCP) transcription factor OsTCP5 via the SPL dimerization and TCP interaction domain
OsSPL	Os05g0501800	LOC_Os05g42240	pollen	OsSPL regulates meiotic fate acquisition in rice.	We showed that meiosis-specific callose deposition, chromatin organization, and centromere-specific histone H3 loading were altered in the cells corresponding to pollen mother cells in Osspl anthers
OsSPL	Os05g0501800	LOC_Os05g42240	development	OsSPL regulates meiotic fate acquisition in rice.	Global transcriptome analysis showed that the enriched differentially expressed genes in Osspl were mainly related to redox status, meiotic process, and parietal cell development
OsSPL	Os05g0501800	LOC_Os05g42240	map-based cloning	OsSPL regulates meiotic fate acquisition in rice.	We performed a large-scale genetic screen of rice sterile mutants aimed to identify genes regulating meiotic entry and identified OsSPL using map-based cloning
OsSPL	Os05g0501800	LOC_Os05g42240	sterile	OsSPL regulates meiotic fate acquisition in rice.	We performed a large-scale genetic screen of rice sterile mutants aimed to identify genes regulating meiotic entry and identified OsSPL using map-based cloning
OsSPL	Os05g0501800	LOC_Os05g42240	meiotic	OsSPL regulates meiotic fate acquisition in rice.	OsSPL regulates meiotic fate acquisition in rice.
OsSPL	Os05g0501800	LOC_Os05g42240	meiotic	OsSPL regulates meiotic fate acquisition in rice.	We performed a large-scale genetic screen of rice sterile mutants aimed to identify genes regulating meiotic entry and identified OsSPL using map-based cloning
OsSPL	Os05g0501800	LOC_Os05g42240	meiotic	OsSPL regulates meiotic fate acquisition in rice.	Global transcriptome analysis showed that the enriched differentially expressed genes in Osspl were mainly related to redox status, meiotic process, and parietal cell development
OsSPL1	Os01g0100900	LOC_Os01g01080	abiotic stress	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance	In this study, we performed functional analysis of a rice (Oryza sativa) S1P lyase gene OsSPL1 in transgenic tobacco plants and explored its possible involvement in abiotic stress response
OsSPL1	Os01g0100900	LOC_Os01g01080	abiotic stress	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance	Our results suggest that rice OsSPL1 plays an important role in abiotic stress responses
OsSPL1	Os01g0100900	LOC_Os01g01080	oxidative	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance	Overexpression of OsSPL1 in transgenic tobacco resulted in enhanced sensitivity to exogenous abscisic acid (ABA), and decreased tolerance to salt and oxidative stress, when compared with the wild type
OsSPL1	Os01g0100900	LOC_Os01g01080	oxidative	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance	Furthermore, the expression levels of some selected stress-related genes in OsSPL1-overexpressing plants were reduced after application of salt or oxidative stress, indicating that the altered responsiveness of stress-related genes may be responsible for the reduced tolerance in OsSPL1-overexpressing tobacco plants under salt and oxidative stress
OsSPL1	Os01g0100900	LOC_Os01g01080	oxidative	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance
OsSPL1	Os01g0100900	LOC_Os01g01080	salt	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance	Overexpression of OsSPL1 in transgenic tobacco resulted in enhanced sensitivity to exogenous abscisic acid (ABA), and decreased tolerance to salt and oxidative stress, when compared with the wild type
OsSPL1	Os01g0100900	LOC_Os01g01080	salt	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance	Furthermore, the expression levels of some selected stress-related genes in OsSPL1-overexpressing plants were reduced after application of salt or oxidative stress, indicating that the altered responsiveness of stress-related genes may be responsible for the reduced tolerance in OsSPL1-overexpressing tobacco plants under salt and oxidative stress
OsSPL1	Os01g0100900	LOC_Os01g01080	salt	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance	Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance
OsSPL1	Os01g0100900	LOC_Os01g01080	disease	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
OsSPL1	Os01g0100900	LOC_Os01g01080	disease	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Our results indicate that overexpression of OsSPL1 in transgenic tobacco plants attenuated disease resistance and facilitated programmed cell death
OsSPL1	Os01g0100900	LOC_Os01g01080	disease	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Expression of OsSPL1 was down-regulated in rice plants after treatments with salicylic acid, benzothiadiazole and 1-amino cyclopropane-1-carboxylic acid, but was induced by infection with a virulent strain of Magnaporthe oryzae, the causal agent of rice blast disease
OsSPL1	Os01g0100900	LOC_Os01g01080	disease	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Transgenic tobacco lines with overexpression of OsSPL1 were generated and analyzed for the possible role of OsSPL1 in disease resistance response and PCD
OsSPL1	Os01g0100900	LOC_Os01g01080	disease	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Our results suggest that OsSPL1 has different functions in regulating disease resistance response and PCD in plants
OsSPL1	Os01g0100900	LOC_Os01g01080	blast	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Expression of OsSPL1 was down-regulated in rice plants after treatments with salicylic acid, benzothiadiazole and 1-amino cyclopropane-1-carboxylic acid, but was induced by infection with a virulent strain of Magnaporthe oryzae, the causal agent of rice blast disease
OsSPL1	Os01g0100900	LOC_Os01g01080	PCD	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Transgenic tobacco lines with overexpression of OsSPL1 were generated and analyzed for the possible role of OsSPL1 in disease resistance response and PCD
OsSPL1	Os01g0100900	LOC_Os01g01080	PCD	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Our results suggest that OsSPL1 has different functions in regulating disease resistance response and PCD in plants
OsSPL1	Os01g0100900	LOC_Os01g01080	resistance	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
OsSPL1	Os01g0100900	LOC_Os01g01080	resistance	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Our results indicate that overexpression of OsSPL1 in transgenic tobacco plants attenuated disease resistance and facilitated programmed cell death
OsSPL1	Os01g0100900	LOC_Os01g01080	resistance	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Transgenic tobacco lines with overexpression of OsSPL1 were generated and analyzed for the possible role of OsSPL1 in disease resistance response and PCD
OsSPL1	Os01g0100900	LOC_Os01g01080	resistance	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Our results suggest that OsSPL1 has different functions in regulating disease resistance response and PCD in plants
OsSPL1	Os01g0100900	LOC_Os01g01080	disease resistance	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and  functional analysis of its role in disease resistance response	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and  functional analysis of its role in disease resistance response
OsSPL10	Os06g0659100	LOC_Os06g44860	leaf	OsSPL10, a SBP-Box Gene, Plays a Dual Role in Salt Tolerance and Trichome Formation in Rice (Oryza sativa L.)	We previously found a single-gene recessive mutant sst, which displayed increased salt tolerance and glabrous leaf and glume without trichomes, and identified an SBP-box gene OsSPL10 as the candidate of the SST gene
OsSPL10	Os06g0659100	LOC_Os06g44860	panicle	OsSPL10, a SBP-Box Gene, Plays a Dual Role in Salt Tolerance and Trichome Formation in Rice (Oryza sativa L.)	In addition, expression analysis indicated that OsSPL10 was preferentially expressed in young panicle and stem, and protein OsSPL10 was localized in nucleus
OsSPL10	Os06g0659100	LOC_Os06g44860	salt	OsSPL10, a SBP-Box Gene, Plays a Dual Role in Salt Tolerance and Trichome Formation in Rice (Oryza sativa L.)	We previously found a single-gene recessive mutant sst, which displayed increased salt tolerance and glabrous leaf and glume without trichomes, and identified an SBP-box gene OsSPL10 as the candidate of the SST gene
OsSPL10	Os06g0659100	LOC_Os06g44860	salt	OsSPL10, a SBP-Box Gene, Plays a Dual Role in Salt Tolerance and Trichome Formation in Rice (Oryza sativa L.)	Taken together, OsSPL10 negatively controls salt tolerance  but positively controls trichome formation in rice
OsSPL10	Os06g0659100	LOC_Os06g44860	tolerance	OsSPL10, a SBP-Box Gene, Plays a Dual Role in Salt Tolerance and Trichome Formation in Rice (Oryza sativa L.)	We previously found a single-gene recessive mutant sst, which displayed increased salt tolerance and glabrous leaf and glume without trichomes, and identified an SBP-box gene OsSPL10 as the candidate of the SST gene
OsSPL10	Os06g0659100	LOC_Os06g44860	tolerance	OsSPL10, a SBP-Box Gene, Plays a Dual Role in Salt Tolerance and Trichome Formation in Rice (Oryza sativa L.)	Taken together, OsSPL10 negatively controls salt tolerance  but positively controls trichome formation in rice
OsSPL10	Os06g0659100	LOC_Os06g44860	salt tolerance	OsSPL10, a SBP-Box Gene, Plays a Dual Role in Salt Tolerance and Trichome Formation in Rice (Oryza sativa L.)	We previously found a single-gene recessive mutant sst, which displayed increased salt tolerance and glabrous leaf and glume without trichomes, and identified an SBP-box gene OsSPL10 as the candidate of the SST gene
OsSPL10	Os06g0659100	LOC_Os06g44860	salt tolerance	OsSPL10, a SBP-Box Gene, Plays a Dual Role in Salt Tolerance and Trichome Formation in Rice (Oryza sativa L.)	Taken together, OsSPL10 negatively controls salt tolerance  but positively controls trichome formation in rice
OsSPL10	Os06g0659100	LOC_Os06g44860	nucleus	OsSPL10, a SBP-Box Gene, Plays a Dual Role in Salt Tolerance and Trichome Formation in Rice (Oryza sativa L.)	In addition, expression analysis indicated that OsSPL10 was preferentially expressed in young panicle and stem, and protein OsSPL10 was localized in nucleus
OsSPL10	Os06g0659100	LOC_Os06g44860	leaf	Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes	Disruption of OsSPL10 by genome editing decreased leaf trichome density and length in the NIL-HL6 background
OsSPL10	Os06g0659100	LOC_Os06g44860	transcription factor	Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes	HAIRY LEAF6 (HL6) encodes another transcription factor that regulates trichome initiation and elongation, and OsSPL10 directly binds to the HL6 promoter to regulate its expression
OsSPL10	Os06g0659100	LOC_Os06g44860	development	Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes	Tests of allelism in 51 glabrous rice (Oryza sativa) accessions collected worldwide identified OsSPL10 and OsWOX3B as regulators of trichome development in rice
OsSPL10	Os06g0659100	LOC_Os06g44860	development	Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes	Here, we report that OsSPL10 acts as a transcriptional regulator controlling trichome development
OsSPL10	Os06g0659100	LOC_Os06g44860	transcriptional regulator	Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes	Here, we report that OsSPL10 acts as a transcriptional regulator controlling trichome development
OsSPL13	Os07g0505200	LOC_Os07g32170	grain	OsSPL13 controls grain size in cultivated rice.	OsSPL13 controls grain size in cultivated rice.
OsSPL13	Os07g0505200	LOC_Os07g32170	grain size	OsSPL13 controls grain size in cultivated rice.	OsSPL13 controls grain size in cultivated rice.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	Shaping a better rice plant	Two studies describe how regulatory variation at the rice gene OsSPL14 can lead to altered plant morphology and improve grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	lodging	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	We demonstrate that a point mutation in OsSPL14 perturbs OsmiR156-directed regulation of OsSPL14, generating an 'ideal' rice plant with a reduced tiller number, increased lodging resistance and enhanced grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tiller	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Moreover, our results demonstrated that IPA1 could directly bind to the promoter of rice teosinte branched1, a negative regulator of tiller bud outgrowth, to suppress rice tillering, and directly and positively regulate dense and erect panicle1, an important gene regulating panicle architecture, to influence plant height and panicle length
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Here, we report the cloning and characterization of a semidominant quantitative trait locus, IPA1 (Ideal Plant Architecture 1), which profoundly changes rice plant architecture and substantially enhances rice grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	OsSPL14 promotes panicle branching and higher grain productivity in rice	We also demonstrate the feasibility of using the OsSLP14(WFP) allele to increase rice crop yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	OsSPL14 promotes panicle branching and higher grain productivity in rice	Introduction of the high-yielding OsSPL14(WFP) allele into the standard rice variety Nipponbare resulted in increased rice production
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	architecture	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Ideal plant architecture1 (IPA1) is critical in regulating rice (Oryza sativa) plant architecture and substantially enhances grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	architecture	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Moreover, our results demonstrated that IPA1 could directly bind to the promoter of rice teosinte branched1, a negative regulator of tiller bud outgrowth, to suppress rice tillering, and directly and positively regulate dense and erect panicle1, an important gene regulating panicle architecture, to influence plant height and panicle length
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	architecture	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	The elucidation of target genes of IPA1 genome-wide will contribute to understanding the molecular mechanisms underlying plant architecture and to facilitating the breeding of elite varieties with ideal plant architecture
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	lodging resistance	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	We demonstrate that a point mutation in OsSPL14 perturbs OsmiR156-directed regulation of OsSPL14, generating an 'ideal' rice plant with a reduced tiller number, increased lodging resistance and enhanced grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	growth	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Moreover, our results demonstrated that IPA1 could directly bind to the promoter of rice teosinte branched1, a negative regulator of tiller bud outgrowth, to suppress rice tillering, and directly and positively regulate dense and erect panicle1, an important gene regulating panicle architecture, to influence plant height and panicle length
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	breeding	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	The elucidation of target genes of IPA1 genome-wide will contribute to understanding the molecular mechanisms underlying plant architecture and to facilitating the breeding of elite varieties with ideal plant architecture
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain	OsSPL14 promotes panicle branching and higher grain productivity in rice	Higher expression of OsSPL14 in the reproductive stage promotes panicle branching and higher grain yield in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain	OsSPL14 promotes panicle branching and higher grain productivity in rice	OsSPL14 promotes panicle branching and higher grain productivity in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Here, we report the cloning and characterization of a semidominant quantitative trait locus, IPA1 (Ideal Plant Architecture 1), which profoundly changes rice plant architecture and substantially enhances rice grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tiller	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	We demonstrate that a point mutation in OsSPL14 perturbs OsmiR156-directed regulation of OsSPL14, generating an 'ideal' rice plant with a reduced tiller number, increased lodging resistance and enhanced grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	branching	OsSPL14 promotes panicle branching and higher grain productivity in rice	Higher expression of OsSPL14 in the reproductive stage promotes panicle branching and higher grain yield in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	branching	OsSPL14 promotes panicle branching and higher grain productivity in rice	OsSPL14 controls shoot branching in the vegetative stage and is affected by microRNA excision
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	branching	OsSPL14 promotes panicle branching and higher grain productivity in rice	OsSPL14 promotes panicle branching and higher grain productivity in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	shoot	OsSPL14 promotes panicle branching and higher grain productivity in rice	OsSPL14 controls shoot branching in the vegetative stage and is affected by microRNA excision
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tiller number	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	We demonstrate that a point mutation in OsSPL14 perturbs OsmiR156-directed regulation of OsSPL14, generating an 'ideal' rice plant with a reduced tiller number, increased lodging resistance and enhanced grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	vegetative	OsSPL14 promotes panicle branching and higher grain productivity in rice	OsSPL14 controls shoot branching in the vegetative stage and is affected by microRNA excision
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain yield	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Ideal plant architecture1 (IPA1) is critical in regulating rice (Oryza sativa) plant architecture and substantially enhances grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	architecture	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Here, we report the cloning and characterization of a semidominant quantitative trait locus, IPA1 (Ideal Plant Architecture 1), which profoundly changes rice plant architecture and substantially enhances rice grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	breeding	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Our study suggests that OsSPL14 may help improve rice grain yield by facilitating the breeding of new elite rice varieties
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle architecture	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Moreover, our results demonstrated that IPA1 could directly bind to the promoter of rice teosinte branched1, a negative regulator of tiller bud outgrowth, to suppress rice tillering, and directly and positively regulate dense and erect panicle1, an important gene regulating panicle architecture, to influence plant height and panicle length
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	OsSPL14 promotes panicle branching and higher grain productivity in rice	Here we show that the quantitative trait locus WFP (WEALTHY FARMER'S PANICLE) encodes OsSPL14 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14, also known as IPA1)
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	We demonstrate that a point mutation in OsSPL14 perturbs OsmiR156-directed regulation of OsSPL14, generating an 'ideal' rice plant with a reduced tiller number, increased lodging resistance and enhanced grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Our study suggests that OsSPL14 may help improve rice grain yield by facilitating the breeding of new elite rice varieties
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	To elucidate its molecular basis, we first confirmed IPA1 as a functional transcription activator and then identified 1067 and 2185 genes associated with IPA1 binding sites in shoot apices and young panicles, respectively, through chromatin immunoprecipitation sequencing assays
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Moreover, our results demonstrated that IPA1 could directly bind to the promoter of rice teosinte branched1, a negative regulator of tiller bud outgrowth, to suppress rice tillering, and directly and positively regulate dense and erect panicle1, an important gene regulating panicle architecture, to influence plant height and panicle length
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	erect	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Moreover, our results demonstrated that IPA1 could directly bind to the promoter of rice teosinte branched1, a negative regulator of tiller bud outgrowth, to suppress rice tillering, and directly and positively regulate dense and erect panicle1, an important gene regulating panicle architecture, to influence plant height and panicle length
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain	Shaping a better rice plant	Two studies describe how regulatory variation at the rice gene OsSPL14 can lead to altered plant morphology and improve grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	reproductive	OsSPL14 promotes panicle branching and higher grain productivity in rice	Higher expression of OsSPL14 in the reproductive stage promotes panicle branching and higher grain yield in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	OsSPL14 promotes panicle branching and higher grain productivity in rice	Higher expression of OsSPL14 in the reproductive stage promotes panicle branching and higher grain yield in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	OsSPL14 promotes panicle branching and higher grain productivity in rice	OsSPL14 promotes panicle branching and higher grain productivity in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain yield	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Here, we report the cloning and characterization of a semidominant quantitative trait locus, IPA1 (Ideal Plant Architecture 1), which profoundly changes rice plant architecture and substantially enhances rice grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Ideal plant architecture1 (IPA1) is critical in regulating rice (Oryza sativa) plant architecture and substantially enhances grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	shoot	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	To elucidate its molecular basis, we first confirmed IPA1 as a functional transcription activator and then identified 1067 and 2185 genes associated with IPA1 binding sites in shoot apices and young panicles, respectively, through chromatin immunoprecipitation sequencing assays
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain yield	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	We demonstrate that a point mutation in OsSPL14 perturbs OsmiR156-directed regulation of OsSPL14, generating an 'ideal' rice plant with a reduced tiller number, increased lodging resistance and enhanced grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain yield	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Our study suggests that OsSPL14 may help improve rice grain yield by facilitating the breeding of new elite rice varieties
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	OsSPL14 promotes panicle branching and higher grain productivity in rice	Higher expression of OsSPL14 in the reproductive stage promotes panicle branching and higher grain yield in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Ideal plant architecture1 (IPA1) is critical in regulating rice (Oryza sativa) plant architecture and substantially enhances grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	architecture	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tillering	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Moreover, our results demonstrated that IPA1 could directly bind to the promoter of rice teosinte branched1, a negative regulator of tiller bud outgrowth, to suppress rice tillering, and directly and positively regulate dense and erect panicle1, an important gene regulating panicle architecture, to influence plant height and panicle length
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain yield	Shaping a better rice plant	Two studies describe how regulatory variation at the rice gene OsSPL14 can lead to altered plant morphology and improve grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	We demonstrate that a point mutation in OsSPL14 perturbs OsmiR156-directed regulation of OsSPL14, generating an 'ideal' rice plant with a reduced tiller number, increased lodging resistance and enhanced grain yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Our study suggests that OsSPL14 may help improve rice grain yield by facilitating the breeding of new elite rice varieties
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	height	Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture	Moreover, our results demonstrated that IPA1 could directly bind to the promoter of rice teosinte branched1, a negative regulator of tiller bud outgrowth, to suppress rice tillering, and directly and positively regulate dense and erect panicle1, an important gene regulating panicle architecture, to influence plant height and panicle length
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain yield	OsSPL14 promotes panicle branching and higher grain productivity in rice	Higher expression of OsSPL14 in the reproductive stage promotes panicle branching and higher grain yield in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	leaf	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Expression analysis of OsSPL14 (LOC_Os08g39890) gene reported to be associated with increased panicle branching and higher grain yield through real time PCR in leaf and three stages of panicle has shown differential temporal expression and its association with yield and yield related components across the genotypes
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	leaf	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Since OsSPL14 is a functional transcription activator, its association of expression in leaf and three panicle stages with yield components as observed in the present study suggests the role of nitrogen metabolism related genes in plant growth and development and its conversion into yield components in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	growth	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Since OsSPL14 is a functional transcription activator, its association of expression in leaf and three panicle stages with yield components as observed in the present study suggests the role of nitrogen metabolism related genes in plant growth and development and its conversion into yield components in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Expression analysis of OsSPL14 (LOC_Os08g39890) gene reported to be associated with increased panicle branching and higher grain yield through real time PCR in leaf and three stages of panicle has shown differential temporal expression and its association with yield and yield related components across the genotypes
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	The expression of OsSPL14 at panicle stage 3, has shown correlation (P&lt;0
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Since OsSPL14 is a functional transcription activator, its association of expression in leaf and three panicle stages with yield components as observed in the present study suggests the role of nitrogen metabolism related genes in plant growth and development and its conversion into yield components in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Expression analysis of OsSPL14 (LOC_Os08g39890) gene reported to be associated with increased panicle branching and higher grain yield through real time PCR in leaf and three stages of panicle has shown differential temporal expression and its association with yield and yield related components across the genotypes
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	nitrogen	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	nitrogen	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Since OsSPL14 is a functional transcription activator, its association of expression in leaf and three panicle stages with yield components as observed in the present study suggests the role of nitrogen metabolism related genes in plant growth and development and its conversion into yield components in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	development	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Since OsSPL14 is a functional transcription activator, its association of expression in leaf and three panicle stages with yield components as observed in the present study suggests the role of nitrogen metabolism related genes in plant growth and development and its conversion into yield components in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain yield	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Expression analysis of OsSPL14 (LOC_Os08g39890) gene reported to be associated with increased panicle branching and higher grain yield through real time PCR in leaf and three stages of panicle has shown differential temporal expression and its association with yield and yield related components across the genotypes
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Expression analysis of OsSPL14 (LOC_Os08g39890) gene reported to be associated with increased panicle branching and higher grain yield through real time PCR in leaf and three stages of panicle has shown differential temporal expression and its association with yield and yield related components across the genotypes
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Since OsSPL14 is a functional transcription activator, its association of expression in leaf and three panicle stages with yield components as observed in the present study suggests the role of nitrogen metabolism related genes in plant growth and development and its conversion into yield components in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	branching	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Expression analysis of OsSPL14 (LOC_Os08g39890) gene reported to be associated with increased panicle branching and higher grain yield through real time PCR in leaf and three stages of panicle has shown differential temporal expression and its association with yield and yield related components across the genotypes
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	transcription activator	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Since OsSPL14 is a functional transcription activator, its association of expression in leaf and three panicle stages with yield components as observed in the present study suggests the role of nitrogen metabolism related genes in plant growth and development and its conversion into yield components in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	plant growth	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Since OsSPL14 is a functional transcription activator, its association of expression in leaf and three panicle stages with yield components as observed in the present study suggests the role of nitrogen metabolism related genes in plant growth and development and its conversion into yield components in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	transcription factor	IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.	IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	transcription factor	IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.	 These findings reveal that IPA1 is likely one of the long-speculated transcription factors that act with D53 to mediate the SL-regulated tiller development in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tiller	IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.	 These findings reveal that IPA1 is likely one of the long-speculated transcription factors that act with D53 to mediate the SL-regulated tiller development in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	development	IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.	 These findings reveal that IPA1 is likely one of the long-speculated transcription factors that act with D53 to mediate the SL-regulated tiller development in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	strigolactone	IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.	IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	growth	A single transcription factor promotes both yield and immunity in rice.	 IPA1 returns to a nonphosphorylated state within 48 hours after infection, resuming support of the growth needed for high yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	growth	A single transcription factor promotes both yield and immunity in rice.	 Thus, IPA1 promotes both yield and disease resistance by sustaining a balance between growth and immunity
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	resistance	A single transcription factor promotes both yield and immunity in rice.	 Phosphorylated IPA1 binds to the promoter of the pathogen defense gene WRKY45 and activates its expression, leading to enhanced disease resistance
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	resistance	A single transcription factor promotes both yield and immunity in rice.	 Thus, IPA1 promotes both yield and disease resistance by sustaining a balance between growth and immunity
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	defense	A single transcription factor promotes both yield and immunity in rice.	 Phosphorylated IPA1 binds to the promoter of the pathogen defense gene WRKY45 and activates its expression, leading to enhanced disease resistance
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	A single transcription factor promotes both yield and immunity in rice.	 IPA1 returns to a nonphosphorylated state within 48 hours after infection, resuming support of the growth needed for high yield
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	A single transcription factor promotes both yield and immunity in rice.	 Thus, IPA1 promotes both yield and disease resistance by sustaining a balance between growth and immunity
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	disease	A single transcription factor promotes both yield and immunity in rice.	 Phosphorylated IPA1 binds to the promoter of the pathogen defense gene WRKY45 and activates its expression, leading to enhanced disease resistance
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	disease	A single transcription factor promotes both yield and immunity in rice.	 Thus, IPA1 promotes both yield and disease resistance by sustaining a balance between growth and immunity
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	disease resistance	A single transcription factor promotes both yield and immunity in rice.	 Phosphorylated IPA1 binds to the promoter of the pathogen defense gene WRKY45 and activates its expression, leading to enhanced disease resistance
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	disease resistance	A single transcription factor promotes both yield and immunity in rice.	 Thus, IPA1 promotes both yield and disease resistance by sustaining a balance between growth and immunity
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	magnaporthe oryzae	A single transcription factor promotes both yield and immunity in rice.	 Mechanistically, phosphorylation of IPA1 at amino acid Ser163 within its DNA binding domain occurs in response to infection by the fungus Magnaporthe oryzae and alters the DNA binding specificity of IPA1
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	immunity	A single transcription factor promotes both yield and immunity in rice.	 Here we report that higher IPA1 levels enhance immunity
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	immunity	A single transcription factor promotes both yield and immunity in rice.	 Thus, IPA1 promotes both yield and disease resistance by sustaining a balance between growth and immunity
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	pathogen	A single transcription factor promotes both yield and immunity in rice.	 Phosphorylated IPA1 binds to the promoter of the pathogen defense gene WRKY45 and activates its expression, leading to enhanced disease resistance
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	resistance	Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.	 We discovered that gibberellin signalling might be partially responsible for the disease resistance and developmental defects in IPA1 overexpressors
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	resistance	Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.	 We then generated transgenic rice plants expressing IPA1 with the pathogen-inducible promoter of OsHEN1; these plants had both enhanced disease resistance and enhanced yield-related traits
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	gibberellin	Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.	 We discovered that gibberellin signalling might be partially responsible for the disease resistance and developmental defects in IPA1 overexpressors
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	disease	Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.	 We discovered that gibberellin signalling might be partially responsible for the disease resistance and developmental defects in IPA1 overexpressors
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	disease	Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.	 We then generated transgenic rice plants expressing IPA1 with the pathogen-inducible promoter of OsHEN1; these plants had both enhanced disease resistance and enhanced yield-related traits
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	disease resistance	Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.	 We discovered that gibberellin signalling might be partially responsible for the disease resistance and developmental defects in IPA1 overexpressors
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	disease resistance	Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.	 We then generated transgenic rice plants expressing IPA1 with the pathogen-inducible promoter of OsHEN1; these plants had both enhanced disease resistance and enhanced yield-related traits
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	Gibberellin	Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.	 We discovered that gibberellin signalling might be partially responsible for the disease resistance and developmental defects in IPA1 overexpressors
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	transcription factor	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 Using transient dual-luciferase and yeast one-hybrid assays, IPA1 was found to directly activate the expression of OsWRKY51 and OsWRKY71, which would interfere with the binding affinity of GA-induced transcription factor OsGAMYB to inhibit the expression of ��-amylase genes
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	growth	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 To investigate the role of IPA1 in early seedling development, we developed a pair of IPA1/ipal-NILs and found that seed germination and early seedling growth were retarded in the ipa1-NIL
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	growth	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 In summary, our results suggest that IPA1 negatively regulates seed germination and early seedling growth by interfering with starch metabolism via the GA and WRKY pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	development	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedling	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedling	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 To investigate the role of IPA1 in early seedling development, we developed a pair of IPA1/ipal-NILs and found that seed germination and early seedling growth were retarded in the ipa1-NIL
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedling	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 In summary, our results suggest that IPA1 negatively regulates seed germination and early seedling growth by interfering with starch metabolism via the GA and WRKY pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seed	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 To investigate the role of IPA1 in early seedling development, we developed a pair of IPA1/ipal-NILs and found that seed germination and early seedling growth were retarded in the ipa1-NIL
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seed	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 In summary, our results suggest that IPA1 negatively regulates seed germination and early seedling growth by interfering with starch metabolism via the GA and WRKY pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	starch	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	starch	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 In summary, our results suggest that IPA1 negatively regulates seed germination and early seedling growth by interfering with starch metabolism via the GA and WRKY pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seed germination	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 To investigate the role of IPA1 in early seedling development, we developed a pair of IPA1/ipal-NILs and found that seed germination and early seedling growth were retarded in the ipa1-NIL
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seed germination	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 In summary, our results suggest that IPA1 negatively regulates seed germination and early seedling growth by interfering with starch metabolism via the GA and WRKY pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	 ga 	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	 ga 	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 In summary, our results suggest that IPA1 negatively regulates seed germination and early seedling growth by interfering with starch metabolism via the GA and WRKY pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	GA	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	GA	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 In summary, our results suggest that IPA1 negatively regulates seed germination and early seedling growth by interfering with starch metabolism via the GA and WRKY pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedling growth	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 To investigate the role of IPA1 in early seedling development, we developed a pair of IPA1/ipal-NILs and found that seed germination and early seedling growth were retarded in the ipa1-NIL
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedling growth	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	 In summary, our results suggest that IPA1 negatively regulates seed germination and early seedling growth by interfering with starch metabolism via the GA and WRKY pathways
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	leaf	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 The ipa1 plants had a better-developed root system and smaller leaf stomatal aperture
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	transcription factor	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 IPA1 (IDEAL PLANT ARCHITECTURE 1)/OsSPL14 encodes a transcription factor and has been reported to function in both rice ideal plant architecture and biotic resistance
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	transcription factor	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 In addition, based on yeast one-hybrid assay and dual-luciferase assay, IPA1 was found to directly activate the promoter activity of OsHOX12, a transcription factor promoting ABA biosynthesis, and OsNAC52, a positive regulator of the ABA pathway
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedlings	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 In both the control and PEG-treated conditions, ABA content in the ipa1 seedlings was significantly higher than that in the IPA1 seedlings
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedlings	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Expression of the ABA biosynthesis genes was detected to be up-regulated, whereas the expression of ABA catabolism genes was down-regulated in the ipa1 seedlings
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	root	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 The ipa1 plants had a better-developed root system and smaller leaf stomatal aperture
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	resistance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 IPA1 (IDEAL PLANT ARCHITECTURE 1)/OsSPL14 encodes a transcription factor and has been reported to function in both rice ideal plant architecture and biotic resistance
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	resistance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Combined with the previous studies, our results suggested that ipa1 could improve rice seedling drought tolerance mainly through activating the ABA pathway and that regulation of the ipa1-mediated ABA pathway will be an important strategy for improving drought resistance of rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedling	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedling	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Here, with a pair of IPA1 and ipa1-NILs (Near Iso-genic Lines), we found that ipa1 could significantly improve rice drought tolerance at seedling stage
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	seedling	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Combined with the previous studies, our results suggested that ipa1 could improve rice seedling drought tolerance mainly through activating the ABA pathway and that regulation of the ipa1-mediated ABA pathway will be an important strategy for improving drought resistance of rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	KEY MESSAGE: ipa1 enhances rice drought tolerance mainly through activating the ABA pathway
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Here, with a pair of IPA1 and ipa1-NILs (Near Iso-genic Lines), we found that ipa1 could significantly improve rice drought tolerance at seedling stage
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Combined with the previous studies, our results suggested that ipa1 could improve rice seedling drought tolerance mainly through activating the ABA pathway and that regulation of the ipa1-mediated ABA pathway will be an important strategy for improving drought resistance of rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tolerance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tolerance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	KEY MESSAGE: ipa1 enhances rice drought tolerance mainly through activating the ABA pathway
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tolerance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Here, with a pair of IPA1 and ipa1-NILs (Near Iso-genic Lines), we found that ipa1 could significantly improve rice drought tolerance at seedling stage
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tolerance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Combined with the previous studies, our results suggested that ipa1 could improve rice seedling drought tolerance mainly through activating the ABA pathway and that regulation of the ipa1-mediated ABA pathway will be an important strategy for improving drought resistance of rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	ABA	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	KEY MESSAGE: ipa1 enhances rice drought tolerance mainly through activating the ABA pathway
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	ABA	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 In both the control and PEG-treated conditions, ABA content in the ipa1 seedlings was significantly higher than that in the IPA1 seedlings
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	ABA	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Expression of the ABA biosynthesis genes was detected to be up-regulated, whereas the expression of ABA catabolism genes was down-regulated in the ipa1 seedlings
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	ABA	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 In addition, based on yeast one-hybrid assay and dual-luciferase assay, IPA1 was found to directly activate the promoter activity of OsHOX12, a transcription factor promoting ABA biosynthesis, and OsNAC52, a positive regulator of the ABA pathway
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	ABA	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Combined with the previous studies, our results suggested that ipa1 could improve rice seedling drought tolerance mainly through activating the ABA pathway and that regulation of the ipa1-mediated ABA pathway will be an important strategy for improving drought resistance of rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought tolerance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought tolerance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	KEY MESSAGE: ipa1 enhances rice drought tolerance mainly through activating the ABA pathway
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought tolerance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Here, with a pair of IPA1 and ipa1-NILs (Near Iso-genic Lines), we found that ipa1 could significantly improve rice drought tolerance at seedling stage
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought tolerance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Combined with the previous studies, our results suggested that ipa1 could improve rice seedling drought tolerance mainly through activating the ABA pathway and that regulation of the ipa1-mediated ABA pathway will be an important strategy for improving drought resistance of rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	architecture	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 IPA1 (IDEAL PLANT ARCHITECTURE 1)/OsSPL14 encodes a transcription factor and has been reported to function in both rice ideal plant architecture and biotic resistance
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	stomatal	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 The ipa1 plants had a better-developed root system and smaller leaf stomatal aperture
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	abscisic acid	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	plant architecture	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 IPA1 (IDEAL PLANT ARCHITECTURE 1)/OsSPL14 encodes a transcription factor and has been reported to function in both rice ideal plant architecture and biotic resistance
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought resistance	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Combined with the previous studies, our results suggested that ipa1 could improve rice seedling drought tolerance mainly through activating the ABA pathway and that regulation of the ipa1-mediated ABA pathway will be an important strategy for improving drought resistance of rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	ABA biosynthesis	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Expression of the ABA biosynthesis genes was detected to be up-regulated, whereas the expression of ABA catabolism genes was down-regulated in the ipa1 seedlings
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	ABA biosynthesis	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 In addition, based on yeast one-hybrid assay and dual-luciferase assay, IPA1 was found to directly activate the promoter activity of OsHOX12, a transcription factor promoting ABA biosynthesis, and OsNAC52, a positive regulator of the ABA pathway
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	ABA catabolism	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Expression of the ABA biosynthesis genes was detected to be up-regulated, whereas the expression of ABA catabolism genes was down-regulated in the ipa1 seedlings
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	 ABA 	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	KEY MESSAGE: ipa1 enhances rice drought tolerance mainly through activating the ABA pathway
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	 ABA 	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 In both the control and PEG-treated conditions, ABA content in the ipa1 seedlings was significantly higher than that in the IPA1 seedlings
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	 ABA 	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Expression of the ABA biosynthesis genes was detected to be up-regulated, whereas the expression of ABA catabolism genes was down-regulated in the ipa1 seedlings
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	 ABA 	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 In addition, based on yeast one-hybrid assay and dual-luciferase assay, IPA1 was found to directly activate the promoter activity of OsHOX12, a transcription factor promoting ABA biosynthesis, and OsNAC52, a positive regulator of the ABA pathway
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	 ABA 	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	 Combined with the previous studies, our results suggested that ipa1 could improve rice seedling drought tolerance mainly through activating the ABA pathway and that regulation of the ipa1-mediated ABA pathway will be an important strategy for improving drought resistance of rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	transcription factor	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	 Mechanistic studies revealed that the deleted fragment is a target site for the transcription factor An-1 to repress IPA1 expression in panicles and roots
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	 In this study, we identified a 54-base pair cis-regulatory region in IPA1 via a tiling-deletion-based CRISPR-Cas9 screen that, when deleted, resolves the tradeoff between grains per panicle and tiller number, leading to substantially enhanced grain yield per plant
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	Crop genetic improvement requires balancing complex tradeoffs caused by gene pleiotropy and linkage drags, as exemplified by IPA1 (Ideal Plant Architecture 1), a typical pleiotropic gene in rice that increases grains per panicle but reduces tillers
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	panicle	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	 In this study, we identified a 54-base pair cis-regulatory region in IPA1 via a tiling-deletion-based CRISPR-Cas9 screen that, when deleted, resolves the tradeoff between grains per panicle and tiller number, leading to substantially enhanced grain yield per plant
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tiller	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	 In this study, we identified a 54-base pair cis-regulatory region in IPA1 via a tiling-deletion-based CRISPR-Cas9 screen that, when deleted, resolves the tradeoff between grains per panicle and tiller number, leading to substantially enhanced grain yield per plant
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grains per panicle	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	Crop genetic improvement requires balancing complex tradeoffs caused by gene pleiotropy and linkage drags, as exemplified by IPA1 (Ideal Plant Architecture 1), a typical pleiotropic gene in rice that increases grains per panicle but reduces tillers
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grains per panicle	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	 In this study, we identified a 54-base pair cis-regulatory region in IPA1 via a tiling-deletion-based CRISPR-Cas9 screen that, when deleted, resolves the tradeoff between grains per panicle and tiller number, leading to substantially enhanced grain yield per plant
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	grain yield	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	 In this study, we identified a 54-base pair cis-regulatory region in IPA1 via a tiling-deletion-based CRISPR-Cas9 screen that, when deleted, resolves the tradeoff between grains per panicle and tiller number, leading to substantially enhanced grain yield per plant
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	yield	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	 In this study, we identified a 54-base pair cis-regulatory region in IPA1 via a tiling-deletion-based CRISPR-Cas9 screen that, when deleted, resolves the tradeoff between grains per panicle and tiller number, leading to substantially enhanced grain yield per plant
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	architecture	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	Crop genetic improvement requires balancing complex tradeoffs caused by gene pleiotropy and linkage drags, as exemplified by IPA1 (Ideal Plant Architecture 1), a typical pleiotropic gene in rice that increases grains per panicle but reduces tillers
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	plant architecture	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	Crop genetic improvement requires balancing complex tradeoffs caused by gene pleiotropy and linkage drags, as exemplified by IPA1 (Ideal Plant Architecture 1), a typical pleiotropic gene in rice that increases grains per panicle but reduces tillers
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tiller number	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	 In this study, we identified a 54-base pair cis-regulatory region in IPA1 via a tiling-deletion-based CRISPR-Cas9 screen that, when deleted, resolves the tradeoff between grains per panicle and tiller number, leading to substantially enhanced grain yield per plant
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought	IPA1 improves drought tolerance by activating SNAC1 in rice.	IPA1 improves drought tolerance by activating SNAC1 in rice.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought	IPA1 improves drought tolerance by activating SNAC1 in rice.	 Together, these findings indicated that the IPA1 played important roles in drought tolerance by regulating SNAC1, thus activating the antioxidant system in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tolerance	IPA1 improves drought tolerance by activating SNAC1 in rice.	IPA1 improves drought tolerance by activating SNAC1 in rice.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tolerance	IPA1 improves drought tolerance by activating SNAC1 in rice.	 Further investigation indicated that the IPA1 plays a positive role in drought-stress tolerance by inducing reactive oxygen species scavenging in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	tolerance	IPA1 improves drought tolerance by activating SNAC1 in rice.	 Together, these findings indicated that the IPA1 played important roles in drought tolerance by regulating SNAC1, thus activating the antioxidant system in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought tolerance	IPA1 improves drought tolerance by activating SNAC1 in rice.	IPA1 improves drought tolerance by activating SNAC1 in rice.
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	drought tolerance	IPA1 improves drought tolerance by activating SNAC1 in rice.	 Together, these findings indicated that the IPA1 played important roles in drought tolerance by regulating SNAC1, thus activating the antioxidant system in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	stress tolerance	IPA1 improves drought tolerance by activating SNAC1 in rice.	 Further investigation indicated that the IPA1 plays a positive role in drought-stress tolerance by inducing reactive oxygen species scavenging in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	abscisic acid	IPA1 improves drought tolerance by activating SNAC1 in rice.	 The IPA1 is constitutively expressed and regulated by H(2)O(2), abscisic acid, NaCl and polyethylene glycol 6000 treatments in rice
OsSPL14|IPA1|WFP	Os08g0509600	LOC_Os08g39890	reactive oxygen species	IPA1 improves drought tolerance by activating SNAC1 in rice.	 Further investigation indicated that the IPA1 plays a positive role in drought-stress tolerance by inducing reactive oxygen species scavenging in rice
OsSPL17	Os09g0491532	LOC_Os09g31438	disease	Rice microRNA156/529-SQUAMOSA PROMOTER BINDING PROTEIN-LIKE7/14/17 modules regulate defenses against bacteria	The uncovered miR156/529-OsSPL7/14/17-OsAOS2/OsNPR1 regulatory network provides a potential strategy to genetically improve rice disease resistance.
OsSPL17	Os09g0491532	LOC_Os09g31438	disease resistance	Rice microRNA156/529-SQUAMOSA PROMOTER BINDING PROTEIN-LIKE7/14/17 modules regulate defenses against bacteria	The uncovered miR156/529-OsSPL7/14/17-OsAOS2/OsNPR1 regulatory network provides a potential strategy to genetically improve rice disease resistance.
OsSPL18	Os09g0507100	LOC_Os09g32944	transcription factor	OsSPL18 controls grain weight and grain number in rice.	Transcriptional activation experiments indicated that OsSPL18 is a functional transcription factor with activation domains in both the N-terminus and C-terminus, and both activation domains are indispensable for its biological functions
OsSPL18	Os09g0507100	LOC_Os09g32944	panicle	OsSPL18 controls grain weight and grain number in rice.	In this study, we studied the biological function of OsSPL18 during grain and panicle development in rice
OsSPL18	Os09g0507100	LOC_Os09g32944	panicle	OsSPL18 controls grain weight and grain number in rice.	Knockout (KO) mutants of OsSPL18 exhibited reduced grain width and thickness, panicle length and grain number, but increased tiller number
OsSPL18	Os09g0507100	LOC_Os09g32944	panicle	OsSPL18 controls grain weight and grain number in rice.	qRT-PCR and GUS staining analyses showed that OsSPL18 was highly expressed in developing young panicles and young spikelet hulls, in agreement with its function in regulating grain and panicle development
OsSPL18	Os09g0507100	LOC_Os09g32944	panicle	OsSPL18 controls grain weight and grain number in rice.	Both yeast one-hybrid and dual-luciferase (LUC) assays showed that OsSPL18 could bind to the DEP1 promoter, suggesting that OsSPL18 regulates panicle development by positively regulating the expression of DEP1
OsSPL18	Os09g0507100	LOC_Os09g32944	spikelet	OsSPL18 controls grain weight and grain number in rice.	Cytological analysis showed that OsSPL18 regulates the development of spikelet hulls by affecting cell proliferation
OsSPL18	Os09g0507100	LOC_Os09g32944	spikelet	OsSPL18 controls grain weight and grain number in rice.	qRT-PCR and GUS staining analyses showed that OsSPL18 was highly expressed in developing young panicles and young spikelet hulls, in agreement with its function in regulating grain and panicle development
OsSPL18	Os09g0507100	LOC_Os09g32944	grain	OsSPL18 controls grain weight and grain number in rice.	OsSPL18 controls grain weight and grain number in rice.
OsSPL18	Os09g0507100	LOC_Os09g32944	grain	OsSPL18 controls grain weight and grain number in rice.	In this study, we studied the biological function of OsSPL18 during grain and panicle development in rice
OsSPL18	Os09g0507100	LOC_Os09g32944	grain	OsSPL18 controls grain weight and grain number in rice.	Knockout (KO) mutants of OsSPL18 exhibited reduced grain width and thickness, panicle length and grain number, but increased tiller number
OsSPL18	Os09g0507100	LOC_Os09g32944	grain	OsSPL18 controls grain weight and grain number in rice.	qRT-PCR and GUS staining analyses showed that OsSPL18 was highly expressed in developing young panicles and young spikelet hulls, in agreement with its function in regulating grain and panicle development
OsSPL18	Os09g0507100	LOC_Os09g32944	grain	OsSPL18 controls grain weight and grain number in rice.	Quantitative expression analysis showed that DEP1, a major grain number regulator, was significantly down-regulated in OsSPL18 KO lines
OsSPL18	Os09g0507100	LOC_Os09g32944	tiller	OsSPL18 controls grain weight and grain number in rice.	Knockout (KO) mutants of OsSPL18 exhibited reduced grain width and thickness, panicle length and grain number, but increased tiller number
OsSPL18	Os09g0507100	LOC_Os09g32944	development	OsSPL18 controls grain weight and grain number in rice.	In this study, we studied the biological function of OsSPL18 during grain and panicle development in rice
OsSPL18	Os09g0507100	LOC_Os09g32944	development	OsSPL18 controls grain weight and grain number in rice.	Cytological analysis showed that OsSPL18 regulates the development of spikelet hulls by affecting cell proliferation
OsSPL18	Os09g0507100	LOC_Os09g32944	development	OsSPL18 controls grain weight and grain number in rice.	qRT-PCR and GUS staining analyses showed that OsSPL18 was highly expressed in developing young panicles and young spikelet hulls, in agreement with its function in regulating grain and panicle development
OsSPL18	Os09g0507100	LOC_Os09g32944	development	OsSPL18 controls grain weight and grain number in rice.	Both yeast one-hybrid and dual-luciferase (LUC) assays showed that OsSPL18 could bind to the DEP1 promoter, suggesting that OsSPL18 regulates panicle development by positively regulating the expression of DEP1
OsSPL18	Os09g0507100	LOC_Os09g32944	grain number	OsSPL18 controls grain weight and grain number in rice.	OsSPL18 controls grain weight and grain number in rice.
OsSPL18	Os09g0507100	LOC_Os09g32944	grain number	OsSPL18 controls grain weight and grain number in rice.	Knockout (KO) mutants of OsSPL18 exhibited reduced grain width and thickness, panicle length and grain number, but increased tiller number
OsSPL18	Os09g0507100	LOC_Os09g32944	grain number	OsSPL18 controls grain weight and grain number in rice.	Quantitative expression analysis showed that DEP1, a major grain number regulator, was significantly down-regulated in OsSPL18 KO lines
OsSPL18	Os09g0507100	LOC_Os09g32944	cell proliferation	OsSPL18 controls grain weight and grain number in rice.	Cytological analysis showed that OsSPL18 regulates the development of spikelet hulls by affecting cell proliferation
OsSPL18	Os09g0507100	LOC_Os09g32944	grain weight	OsSPL18 controls grain weight and grain number in rice.	OsSPL18 controls grain weight and grain number in rice.
OsSPL18	Os09g0507100	LOC_Os09g32944	tiller number	OsSPL18 controls grain weight and grain number in rice.	Knockout (KO) mutants of OsSPL18 exhibited reduced grain width and thickness, panicle length and grain number, but increased tiller number
OsSPL18	Os09g0507100	LOC_Os09g32944	grain width	OsSPL18 controls grain weight and grain number in rice.	Knockout (KO) mutants of OsSPL18 exhibited reduced grain width and thickness, panicle length and grain number, but increased tiller number
OsSPL2	Os01g0922600	LOC_Os01g69830	defense	Hydrogen peroxide regulates the Osa-miR156-OsSPL2/OsTIFY11b module in rice.	 The results suggested that H(2) O(2) accumulation in rice suppresses the expression of miR156, and induces the expression of its target genes, OsSPL2 and OsTIFY11b, whose proteins interact in the nucleus to regulate the expression of OsRBBI3-3, which is involved in plant defense
OsSPL2	Os01g0922600	LOC_Os01g69830	nucleus	Hydrogen peroxide regulates the Osa-miR156-OsSPL2/OsTIFY11b module in rice.	 The results suggested that H(2) O(2) accumulation in rice suppresses the expression of miR156, and induces the expression of its target genes, OsSPL2 and OsTIFY11b, whose proteins interact in the nucleus to regulate the expression of OsRBBI3-3, which is involved in plant defense
OsSPL26	None	LOC_Os07g04820	immunity	The Gain-of-Function Mutation, OsSpl26, Positively Regulates Plant Immunity in Rice.	 Our results indicate that the gain-of-function by the mutant allele OsSpl26 positively regulates cell death and immunity in rice
OsSPL26	None	LOC_Os07g04820	cell death	The Gain-of-Function Mutation, OsSpl26, Positively Regulates Plant Immunity in Rice.	 Our results indicate that the gain-of-function by the mutant allele OsSpl26 positively regulates cell death and immunity in rice
OsSPL26	None	LOC_Os07g04820	plasma membrane	The Gain-of-Function Mutation, OsSpl26, Positively Regulates Plant Immunity in Rice.	 OsSPL26 localizes to the plasma membrane and can be detected constitutively in roots, stems, leaves, sheaths and panicles
OsSPL3	Os02g0139400	LOC_Os02g04680	transcription factor	OsSPL3, a SBP-Domain Protein, Regulates Crown Root Development in Rice.	Map-based cloning revealed that lcrn1 is caused by a mutation of a putative transcription factor coding gene OsSPL3 (SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE3)
OsSPL3	Os02g0139400	LOC_Os02g04680	transcription factor	OsSPL3, a SBP-Domain Protein, Regulates Crown Root Development in Rice.	Chromatin immunoprecipitation sequencing assays of OsSPL3-binding sites and RNA-sequencing of differentially expressed transcripts in lcrn1 further identified potential direct targets of OsSPL3 in basal nodes, including a MADS-box transcription factor OsMADS50
OsSPL3	Os02g0139400	LOC_Os02g04680	map-based cloning	OsSPL3, a SBP-Domain Protein, Regulates Crown Root Development in Rice.	Map-based cloning revealed that lcrn1 is caused by a mutation of a putative transcription factor coding gene OsSPL3 (SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE3)
OsSPL4	Os02g0174100	LOC_Os02g07780	panicle	Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis	 We used one of the candidate genes, OsSPL4, whose function was previously unknown, for gene editing experimental validation of the high yield, and confirmed that OsSPL4 significantly affects panicle branching and increases the rice yield
OsSPL4	Os02g0174100	LOC_Os02g07780	yield	Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis	 We used one of the candidate genes, OsSPL4, whose function was previously unknown, for gene editing experimental validation of the high yield, and confirmed that OsSPL4 significantly affects panicle branching and increases the rice yield
OsSPL4	Os02g0174100	LOC_Os02g07780	branching	Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis	 We used one of the candidate genes, OsSPL4, whose function was previously unknown, for gene editing experimental validation of the high yield, and confirmed that OsSPL4 significantly affects panicle branching and increases the rice yield
OsSPL4	Os02g0174100	LOC_Os02g07780	development	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Herein, we report the identification and functional analysis of OsSPL4 in panicle and grain development of rice
OsSPL4	Os02g0174100	LOC_Os02g07780	development	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Cytological analysis showed that OsSPL4 could regulate spikelet development by promoting cell division
OsSPL4	Os02g0174100	LOC_Os02g07780	spikelet	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Cytological analysis showed that OsSPL4 could regulate spikelet development by promoting cell division
OsSPL4	Os02g0174100	LOC_Os02g07780	grain	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.
OsSPL4	Os02g0174100	LOC_Os02g07780	grain	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Herein, we report the identification and functional analysis of OsSPL4 in panicle and grain development of rice
OsSPL4	Os02g0174100	LOC_Os02g07780	grain	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Using CRISPR/Cas9 system, two elite alleles of OsSPL4 were obtained, which exhibited an increasing number of grains per panicle and grain size, resulting in increase of rice yield
OsSPL4	Os02g0174100	LOC_Os02g07780	grain	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 In addition, OsSPL4 could be cleaved by the osa-miR156 in vivo, and the OsmiR156-OsSPL4 module might regulate the grain size in rice
OsSPL4	Os02g0174100	LOC_Os02g07780	grain size	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.
OsSPL4	Os02g0174100	LOC_Os02g07780	grain size	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Using CRISPR/Cas9 system, two elite alleles of OsSPL4 were obtained, which exhibited an increasing number of grains per panicle and grain size, resulting in increase of rice yield
OsSPL4	Os02g0174100	LOC_Os02g07780	grain size	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 In addition, OsSPL4 could be cleaved by the osa-miR156 in vivo, and the OsmiR156-OsSPL4 module might regulate the grain size in rice
OsSPL4	Os02g0174100	LOC_Os02g07780	panicle	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Herein, we report the identification and functional analysis of OsSPL4 in panicle and grain development of rice
OsSPL4	Os02g0174100	LOC_Os02g07780	panicle	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Using CRISPR/Cas9 system, two elite alleles of OsSPL4 were obtained, which exhibited an increasing number of grains per panicle and grain size, resulting in increase of rice yield
OsSPL4	Os02g0174100	LOC_Os02g07780	grains per panicle	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Using CRISPR/Cas9 system, two elite alleles of OsSPL4 were obtained, which exhibited an increasing number of grains per panicle and grain size, resulting in increase of rice yield
OsSPL4	Os02g0174100	LOC_Os02g07780	grain yield	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.
OsSPL4	Os02g0174100	LOC_Os02g07780	yield	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.
OsSPL4	Os02g0174100	LOC_Os02g07780	yield	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Using CRISPR/Cas9 system, two elite alleles of OsSPL4 were obtained, which exhibited an increasing number of grains per panicle and grain size, resulting in increase of rice yield
OsSPL4	Os02g0174100	LOC_Os02g07780	cell division	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Cytological analysis showed that OsSPL4 could regulate spikelet development by promoting cell division
OsSPL4	Os02g0174100	LOC_Os02g07780	spikelet development	The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.	 Cytological analysis showed that OsSPL4 could regulate spikelet development by promoting cell division
OsSPL4	Os02g0174100	LOC_Os02g07780	resistance	Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.	 Transgenic rice lines overexpressing OsSPL4 (OXSPL4) displayed enhanced blast disease resistance accompanied by enhanced the immune responses, including increased expression of defense-relative genes and up-accumulated H(2) O(2) 
OsSPL4	Os02g0174100	LOC_Os02g07780	disease	Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.	 Transgenic rice lines overexpressing OsSPL4 (OXSPL4) displayed enhanced blast disease resistance accompanied by enhanced the immune responses, including increased expression of defense-relative genes and up-accumulated H(2) O(2) 
OsSPL4	Os02g0174100	LOC_Os02g07780	disease resistance	Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.	 Transgenic rice lines overexpressing OsSPL4 (OXSPL4) displayed enhanced blast disease resistance accompanied by enhanced the immune responses, including increased expression of defense-relative genes and up-accumulated H(2) O(2) 
OsSPL4	Os02g0174100	LOC_Os02g07780	blast	Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.	 Transgenic rice lines overexpressing OsSPL4 (OXSPL4) displayed enhanced blast disease resistance accompanied by enhanced the immune responses, including increased expression of defense-relative genes and up-accumulated H(2) O(2) 
OsSPL4	Os02g0174100	LOC_Os02g07780	immune response	Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.	 Transgenic rice lines overexpressing OsSPL4 (OXSPL4) displayed enhanced blast disease resistance accompanied by enhanced the immune responses, including increased expression of defense-relative genes and up-accumulated H(2) O(2) 
OsSPL4	Os02g0174100	LOC_Os02g07780	blast disease	Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.	 Transgenic rice lines overexpressing OsSPL4 (OXSPL4) displayed enhanced blast disease resistance accompanied by enhanced the immune responses, including increased expression of defense-relative genes and up-accumulated H(2) O(2) 
OsSPL7	Os04g0551500	LOC_Os04g46580	tiller	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	Plants over-expressing OsSPL7 had a reduced tiller number, while OsSPL7 RNAi plants had an increased tiller number and a reduced height
OsSPL7	Os04g0551500	LOC_Os04g46580	architecture	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	Genetic analysis showed that OsSPL7 is a target of miR156f that regulates plant architecture
OsSPL7	Os04g0551500	LOC_Os04g46580	height	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	Plants over-expressing OsSPL7 had a reduced tiller number, while OsSPL7 RNAi plants had an increased tiller number and a reduced height
OsSPL7	Os04g0551500	LOC_Os04g46580	tiller number	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	Plants over-expressing OsSPL7 had a reduced tiller number, while OsSPL7 RNAi plants had an increased tiller number and a reduced height
OsSPL7	Os04g0551500	LOC_Os04g46580	plant architecture	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	Genetic analysis showed that OsSPL7 is a target of miR156f that regulates plant architecture
OsSPL7	Os04g0551500	LOC_Os04g46580	transcription factor	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.
OsSPL7	Os04g0551500	LOC_Os04g46580	growth	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	osspl7 knockout (spl7ko) mutants showed LM and growth retardation
OsSPL7	Os04g0551500	LOC_Os04g46580	growth	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Transgenic rice lines strongly overexpressing OsSPL7 (SPL7OX-S) exhibited LM accompanied by accumulated H2O2, whereas moderate expressers of OsSPL7 (SPL7OX-M) did not, and neither of them exhibited severe growth defects
OsSPL7	Os04g0551500	LOC_Os04g46580	growth	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Collectively, our results suggest that OsSPL7 plays a critical role in plant growth and balancing ROS during biotic and abiotic stress
OsSPL7	Os04g0551500	LOC_Os04g46580	abiotic stress	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Collectively, our results suggest that OsSPL7 plays a critical role in plant growth and balancing ROS during biotic and abiotic stress
OsSPL7	Os04g0551500	LOC_Os04g46580	stress	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.
OsSPL7	Os04g0551500	LOC_Os04g46580	stress	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Collectively, our results suggest that OsSPL7 plays a critical role in plant growth and balancing ROS during biotic and abiotic stress
OsSPL7	Os04g0551500	LOC_Os04g46580	nucleus	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Transient expression of OsSPL7-GFP in rice protoplasts indicated that OsSPL7 localizes predominantly in the nucleus
OsSPL7	Os04g0551500	LOC_Os04g46580	biotic stress	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Collectively, our results suggest that OsSPL7 plays a critical role in plant growth and balancing ROS during biotic and abiotic stress
OsSPL7	Os04g0551500	LOC_Os04g46580	plant growth	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Collectively, our results suggest that OsSPL7 plays a critical role in plant growth and balancing ROS during biotic and abiotic stress
OsSPL7	Os04g0551500	LOC_Os04g46580	reactive oxygen species	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.
OsSPL7	Os04g0551500	LOC_Os04g46580	reactive oxygen species	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Herein, we provide several lines of evidence elucidating the importance of OsSPL7 in maintaining reactive oxygen species (ROS) balance via the regulation of downstream gene expression
OsSPL7	Os04g0551500	LOC_Os04g46580	pathogen	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	RNA sequencing analyses identified four major groups of differentially expressed genes associated with LM, pathogen resistance, LM-pathogen resistance, and potential direct targets of OsSPL7
OsSPL7	Os04g0551500	LOC_Os04g46580	stress response	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.
OsSPL7	Os04g0551500	LOC_Os04g46580	pathogen resistance	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	RNA sequencing analyses identified four major groups of differentially expressed genes associated with LM, pathogen resistance, LM-pathogen resistance, and potential direct targets of OsSPL7
OsSPL7	Os04g0551500	LOC_Os04g46580	Heat Stress	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.
OsSPL9	Os05g0408200	LOC_Os05g33810	grain	Overexpression of OsSPL9 enhances accumulation of Cu in rice grain and improves its digestibility and metabolism	Overexpression of OsSPL9 enhances accumulation of Cu in rice grain and improves its digestibility and metabolism
OsSPL9	Os05g0408200	LOC_Os05g33810	transcription factor	Fine-Tuning of MiR528 Accumulation Modulates Flowering Time in Rice.	Moreover, natural variation in the MIR528 promoter region caused differences in miR528 expression among rice varieties, potentially due to differences in the binding strength of the transcription factor OsSPL9
OsSPL9	Os05g0408200	LOC_Os05g33810	development	OsSPL9 Regulates Grain Number and Grain Yield in Rice	OsSPL9 was highly expressed in the early developing young panicles, consistent with its function of regulating panicle development
OsSPL9	Os05g0408200	LOC_Os05g33810	flower	OsSPL9 Regulates Grain Number and Grain Yield in Rice	By combining expression analysis and dual-luciferase assays, we further confirmed that OsSPL9 directly activates the expression of RCN1 (rice TERMINAL FLOWER 1/CENTRORADIALIS homolog) in the early developing young panicle to regulate the panicle branches and GNP
OsSPL9	Os05g0408200	LOC_Os05g33810	panicle	OsSPL9 Regulates Grain Number and Grain Yield in Rice	OsSPL9 was highly expressed in the early developing young panicles, consistent with its function of regulating panicle development
OsSPL9	Os05g0408200	LOC_Os05g33810	panicle	OsSPL9 Regulates Grain Number and Grain Yield in Rice	By combining expression analysis and dual-luciferase assays, we further confirmed that OsSPL9 directly activates the expression of RCN1 (rice TERMINAL FLOWER 1/CENTRORADIALIS homolog) in the early developing young panicle to regulate the panicle branches and GNP
OsSPL9	Os05g0408200	LOC_Os05g33810	grain	OsSPL9 Regulates Grain Number and Grain Yield in Rice	OsSPL9 Regulates Grain Number and Grain Yield in Rice
OsSPL9	Os05g0408200	LOC_Os05g33810	grain number	OsSPL9 Regulates Grain Number and Grain Yield in Rice	OsSPL9 Regulates Grain Number and Grain Yield in Rice
OsSPL9	Os05g0408200	LOC_Os05g33810	grain yield	OsSPL9 Regulates Grain Number and Grain Yield in Rice	OsSPL9 Regulates Grain Number and Grain Yield in Rice
OsSPL9	Os05g0408200	LOC_Os05g33810	yield	OsSPL9 Regulates Grain Number and Grain Yield in Rice	OsSPL9 Regulates Grain Number and Grain Yield in Rice
OsSPLAYED	Os06g0255200	LOC_Os06g14406	embryo development	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	growth	OsSPO11-1 is essential for both homologous chromosome pairing and crossover formation in rice	Rice plants with loss-of-function of OsSPO11-1 have no apparent growth defects during vegetative development, but homologous chromosome pairing and recombination are significantly obstructed
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	vegetative	OsSPO11-1 is essential for both homologous chromosome pairing and crossover formation in rice	Rice plants with loss-of-function of OsSPO11-1 have no apparent growth defects during vegetative development, but homologous chromosome pairing and recombination are significantly obstructed
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Moreover, OsCOM1 was loaded normally onto meiotic chromosomes in Osrec8, zep1 and Osmer3 mutants, but could not be properly loaded in Osam1, pair2 and OsSPO11-1(RNAi) plants
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	growth	Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants	The over expression of OsTOP6A1 in transgenic Arabidopsis plants driven by cauliflower mosaic virus-35S promoter resulted in pleiotropic effects on plant growth and development
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	flower	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	OsTOP6A1 was predominantly expressed in prepollinated flowers
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	meiotic	Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants	Although AtSPO11-1, the homolog of OsTOP6A1 in Arabidopsis, has been implicated in meiotic recombination; the present study demonstrates possible additional role of OsTOP6A1 and provides an effective tool for engineering crop plants for tolerance to different environmental stresses
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	meiotic	Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants	Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	meiosis	OsSPO11-1 is essential for both homologous chromosome pairing and crossover formation in rice	Thus, OsSPO11-1 is essential for both homologous chromosomes pairing and crossover formation during meiosis in rice
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	flower	Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants	The over expression of OsTOP6A1 in transgenic Arabidopsis plants driven by cauliflower mosaic virus-35S promoter resulted in pleiotropic effects on plant growth and development
OsSPO11-1|OsTOP6A1	Os03g0752200	LOC_Os03g54091	abiotic stress	Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants	Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants
OsSpo11-4|OsSPO11D	Os12g0622500	LOC_Os12g42760	meiotic	The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay	Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells
OsSpo11-4|OsSPO11D	Os12g0622500	LOC_Os12g42760	meiotic	The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay	Furthermore, we identified a novel SPO11 homologue, OsSPO11D, with robust DSB activity and a possible meiotic function
OsSpo11-4|OsSPO11D	Os12g0622500	LOC_Os12g42760	pollen	The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay	Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells
OsSpo11-4|OsSPO11D	Os12g0622500	LOC_Os12g42760	anther	The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay	Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells
OsSpo11-4|OsSPO11D	Os12g0622500	LOC_Os12g42760	meiosis	OsSpo11-4, a rice homologue of the archaeal TopVIA protein, mediates double-strand DNA cleavage and interacts with OsTopVIB	We further analyzed the biological function of OsSpo11-4 by RNA interference and found that down-regulated expression of OsSpo11-4 led to defects in male meiosis, indicating OsSpo11-4 is required for meiosis
OsSPP	Os01g0376700	LOC_Os01g27880	shoot	Signal peptide peptidases are expressed in the shoot apex of rice, localized to the endoplasmic reticulum	In situ hybridization showed that OsSPPs were strongly expressed in vegetative shoot apex, young panicle, developing panicle, and the early developing florets
OsSPP	Os01g0376700	LOC_Os01g27880	shoot	Signal peptide peptidases are expressed in the shoot apex of rice, localized to the endoplasmic reticulum	OsSPPs are located in both the undifferentiated cells, and the early differentiated cells at the shoot apex
OsSPP	Os01g0376700	LOC_Os01g27880	panicle	Signal peptide peptidases are expressed in the shoot apex of rice, localized to the endoplasmic reticulum	In situ hybridization showed that OsSPPs were strongly expressed in vegetative shoot apex, young panicle, developing panicle, and the early developing florets
OsSPP	Os01g0376700	LOC_Os01g27880	vegetative	Signal peptide peptidases are expressed in the shoot apex of rice, localized to the endoplasmic reticulum	In situ hybridization showed that OsSPPs were strongly expressed in vegetative shoot apex, young panicle, developing panicle, and the early developing florets
Osspr1	Os01g0898300	LOC_Os01g67290	root	Is Reactive Oxygen Species (ROS) the underlying factor for inhibited root growth in Osspr1?	In this addendum, we proposed a possible hypothesis that OsSPR1 maintained the mitochondria function to restrict H2O2 production in root apex for normal root development
Osspr1	Os01g0898300	LOC_Os01g67290	root	Is Reactive Oxygen Species (ROS) the underlying factor for inhibited root growth in Osspr1?	Is Reactive Oxygen Species (ROS) the underlying factor for inhibited root growth in Osspr1?
Osspr1	Os01g0898300	LOC_Os01g67290	root	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
Osspr1	Os01g0898300	LOC_Os01g67290	root	Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa	* A rice mutant, Oryza sativa short postembryonic roots 1 (Osspr1), has been characterized
Osspr1	Os01g0898300	LOC_Os01g67290	root	Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa	* Osspr1 mutants exhibited decreased root cell elongation
Osspr1	Os01g0898300	LOC_Os01g67290	root	Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa	Complementation of the mutant confirmed that OsSPR1 is involved in post-embryonic root elongation and iron homeostasis in rice
Osspr1	Os01g0898300	LOC_Os01g67290	growth	Is Reactive Oxygen Species (ROS) the underlying factor for inhibited root growth in Osspr1?	Is Reactive Oxygen Species (ROS) the underlying factor for inhibited root growth in Osspr1?
Osspr1	Os01g0898300	LOC_Os01g67290	iron	Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa	Complementation of the mutant confirmed that OsSPR1 is involved in post-embryonic root elongation and iron homeostasis in rice
Osspr1	Os01g0898300	LOC_Os01g67290	mitochondria	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
Osspr1	Os01g0898300	LOC_Os01g67290	iron	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
Osspr1	Os01g0898300	LOC_Os01g67290	homeostasis	Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa	Complementation of the mutant confirmed that OsSPR1 is involved in post-embryonic root elongation and iron homeostasis in rice
Osspr1	Os01g0898300	LOC_Os01g67290	transporter	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa)	The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content
Osspr1	Os01g0898300	LOC_Os01g67290	mitochondria	Is Reactive Oxygen Species (ROS) the underlying factor for inhibited root growth in Osspr1?	In this addendum, we proposed a possible hypothesis that OsSPR1 maintained the mitochondria function to restrict H2O2 production in root apex for normal root development
Osspr1	Os01g0898300	LOC_Os01g67290	root development	Is Reactive Oxygen Species (ROS) the underlying factor for inhibited root growth in Osspr1?	In this addendum, we proposed a possible hypothesis that OsSPR1 maintained the mitochondria function to restrict H2O2 production in root apex for normal root development
Osspr1	Os01g0898300	LOC_Os01g67290	cell elongation	Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa	* Osspr1 mutants exhibited decreased root cell elongation
OsSPS11	Os11g0236100	LOC_Os11g12810	phosphate	The promoter activities of sucrose phosphate synthase genes in rice, OsSPS1 and OsSPS11, are controlled by light and circadian clock, but not by sucrose	The promoter activities of sucrose phosphate synthase genes in rice, OsSPS1 and OsSPS11, are controlled by light and circadian clock, but not by sucrose
OsSPS2	Os05g0582300	LOC_Os05g50550	mitochondria	Two solanesyl diphosphate synthases with different subcellular localizations and their respective physiological roles in Oryza sativa	Green fluorescent protein fusion analyses showed that OsSPS1 localized to mitochondria, while OsSPS2 localized to plastids
OsSPS2	Os05g0582300	LOC_Os05g50550	mitochondria	Two solanesyl diphosphate synthases with different subcellular localizations and their respective physiological roles in Oryza sativa	This suggests that OsSPS1 is involved in the supply of solanesyl diphosphate for ubiquinone-9 biosynthesis in mitochondria, whereas OsSPS2 is involved in providing solanesyl diphosphate for plastoquinone-9 formation
OsSPS2	Os05g0582300	LOC_Os05g50550	growth	Two solanesyl diphosphate synthases with different subcellular localizations and their respective physiological roles in Oryza sativa	However, an important biological difference was observed between the two genes: OsSPS1 complemented the yeast coq1 disruptant, which does not form UQ, whereas OsSPS2 only very weakly complemented the growth defect of the coq1 mutant
OsSPS2	Os05g0582300	LOC_Os05g50550	root	Two solanesyl diphosphate synthases with different subcellular localizations and their respective physiological roles in Oryza sativa	OsSPS1 was highly expressed in root tissue whereas OsSPS2 was found to be high in both leaves and roots
OsSPT4	Os07g0623400	LOC_Os07g43060	growth	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.
OsSPT4	Os07g0623400	LOC_Os07g43060	growth	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 Loss-of-function mutants of OsSPT4 and OsSPT5-1 could not be obtained; their heterozygotes showed severe reproductive growth defects
OsSPT4	Os07g0623400	LOC_Os07g43060	development	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.
OsSPT4	Os07g0623400	LOC_Os07g43060	reproductive	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 Loss-of-function mutants of OsSPT4 and OsSPT5-1 could not be obtained; their heterozygotes showed severe reproductive growth defects
OsSPT4	Os07g0623400	LOC_Os07g43060	reproductive growth	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 Loss-of-function mutants of OsSPT4 and OsSPT5-1 could not be obtained; their heterozygotes showed severe reproductive growth defects
OsSPT5-1	Os06g0208300	LOC_Os06g10620	transcription factor	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 Furthermore, OsSPT5-1 interacts with the transcription factor ABERRANT PANICLE ORGANIZATION 2 (APO2) and plays a similar role in regulating the growth of rice shoots
OsSPT5-1	Os06g0208300	LOC_Os06g10620	growth	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 Loss-of-function mutants of OsSPT4 and OsSPT5-1 could not be obtained; their heterozygotes showed severe reproductive growth defects
OsSPT5-1	Os06g0208300	LOC_Os06g10620	growth	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 Furthermore, OsSPT5-1 interacts with the transcription factor ABERRANT PANICLE ORGANIZATION 2 (APO2) and plays a similar role in regulating the growth of rice shoots
OsSPT5-1	Os06g0208300	LOC_Os06g10620	panicle	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 Furthermore, OsSPT5-1 interacts with the transcription factor ABERRANT PANICLE ORGANIZATION 2 (APO2) and plays a similar role in regulating the growth of rice shoots
OsSPT5-1	Os06g0208300	LOC_Os06g10620	cytokinin	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 RNA sequencing analysis verified that OsSPT5-1 is involved in multiple phytohormone pathways, including gibberellin, auxin, and cytokinin
OsSPT5-1	Os06g0208300	LOC_Os06g10620	reproductive	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 Loss-of-function mutants of OsSPT4 and OsSPT5-1 could not be obtained; their heterozygotes showed severe reproductive growth defects
OsSPT5-1	Os06g0208300	LOC_Os06g10620	phytohormone	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 RNA sequencing analysis verified that OsSPT5-1 is involved in multiple phytohormone pathways, including gibberellin, auxin, and cytokinin
OsSPT5-1	Os06g0208300	LOC_Os06g10620	reproductive growth	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	 Loss-of-function mutants of OsSPT4 and OsSPT5-1 could not be obtained; their heterozygotes showed severe reproductive growth defects
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	phosphate	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	Here we report on the characterization of rice osa-miR827 and its two target genes, OsSPX-MFS1 and OsSPX-MFS2, which encode SPX-MFS proteins predicted to be implicated in phosphate (Pi) sensing or transport
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	shoot	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	OsSPX-MFS1 mRNA is mainly expressed in shoots under sufficient Pi supply while its expression is reduced on Pi starvation, revealing a direct relationship between induction of osa-miR827 and down-regulation of OsSPX-MFS1
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	phosphate	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	homeostasis	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	The function of OsSPX-MFS1 in Pi homeostasis was analysed using an OsSPX-MFS1 mutant (mfs1) and osa-miR827 overexpression line (miR827-Oe)
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	homeostasis	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	Mutation in OsSPX-MFS1 (mfs1) and overexpression of the upstream miR827 (miR827-Oe) plants impaired Pi homeostasis in the leaves
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	homeostasis	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	* The results suggest that OsSPX-MFS1 is a key player in maintaining Pi homeostasis in the leaves, potentially acting as a Pi transporter
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	homeostasis	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	shoot	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	* Transcript analyses revealed that members of the SPX-MFS family were mainly expressed in the shoots, with OsSPX-MFS1 and OsSPX-MFS3 being suppressed by Pi deficiency, while OsSPX-MFS2 was induced
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	transporter	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	Finally, heterologous complementation of a yeast mutant impaired in Pi transporter was used to assess the capacity of OsSPX-MFS1 to transport Pi
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	transporter	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	* The results suggest that OsSPX-MFS1 is a key player in maintaining Pi homeostasis in the leaves, potentially acting as a Pi transporter
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	The function of OsSPX-MFS1 in Pi homeostasis was analysed using an OsSPX-MFS1 mutant (mfs1) and osa-miR827 overexpression line (miR827-Oe)
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	Finally, heterologous complementation of a yeast mutant impaired in Pi transporter was used to assess the capacity of OsSPX-MFS1 to transport Pi
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	* Transcript analyses revealed that members of the SPX-MFS family were mainly expressed in the shoots, with OsSPX-MFS1 and OsSPX-MFS3 being suppressed by Pi deficiency, while OsSPX-MFS2 was induced
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	Mutation in OsSPX-MFS1 (mfs1) and overexpression of the upstream miR827 (miR827-Oe) plants impaired Pi homeostasis in the leaves
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	In addition, studies in yeast revealed that OsSPX-MFS1 may be involved in Pi transport
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	* The results suggest that OsSPX-MFS1 is a key player in maintaining Pi homeostasis in the leaves, potentially acting as a Pi transporter
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	In parallel, we analyzed the responses of the two OsSPX-MFS1 and OsSPX-MFS2 gene targets to Pi starvation
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	OsSPX-MFS1 mRNA is mainly expressed in shoots under sufficient Pi supply while its expression is reduced on Pi starvation, revealing a direct relationship between induction of osa-miR827 and down-regulation of OsSPX-MFS1
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	This suggests that OsSPX-MFS1 and OsSPX-MFS2 are both negatively regulated by osa-miR827 abundance although they respond differently to external Pi conditions
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	Pi	Identification of plant vacuolar transporters mediating phosphate storage.	Furthermore, we show that heterologous expression of the rice homologue OsSPX-MFS1 mediates Pi influx to yeast vacuoles
OsSPX-MFS1|OsPSS1	Os04g0573000	LOC_Os04g48390	pi	Identification of plant vacuolar transporters mediating phosphate storage.	Furthermore, we show that heterologous expression of the rice homologue OsSPX-MFS1 mediates Pi influx to yeast vacuoles
OsSPX-MFS2	Os02g0678200	LOC_Os02g45520	pi	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	In parallel, we analyzed the responses of the two OsSPX-MFS1 and OsSPX-MFS2 gene targets to Pi starvation
OsSPX-MFS2	Os02g0678200	LOC_Os02g45520	pi	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	In contrast, OsSPX-MFS2 responds in a diametrically opposed manner to Pi starvation
OsSPX-MFS2	Os02g0678200	LOC_Os02g45520	pi	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	The accumulation of OsSPX-MFS2 mRNA is dramatically enhanced under Pi starvation, suggesting the involvement of complex regulation of osa-miR827 and its two target genes
OsSPX-MFS2	Os02g0678200	LOC_Os02g45520	pi	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	This suggests that OsSPX-MFS1 and OsSPX-MFS2 are both negatively regulated by osa-miR827 abundance although they respond differently to external Pi conditions
OsSPX-MFS2	Os02g0678200	LOC_Os02g45520	phosphate	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation	Here we report on the characterization of rice osa-miR827 and its two target genes, OsSPX-MFS1 and OsSPX-MFS2, which encode SPX-MFS proteins predicted to be implicated in phosphate (Pi) sensing or transport
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	shoot	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	* Transcript analyses revealed that members of the SPX-MFS family were mainly expressed in the shoots, with OsSPX-MFS1 and OsSPX-MFS3 being suppressed by Pi deficiency, while OsSPX-MFS2 was induced
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	pi	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves	* Transcript analyses revealed that members of the SPX-MFS family were mainly expressed in the shoots, with OsSPX-MFS1 and OsSPX-MFS3 being suppressed by Pi deficiency, while OsSPX-MFS2 was induced
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	transporter	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	We conclude that OsSPX-MFS3 is a low affinity Pi transporter that mediates Pi efflux from the vacuole into cytosol and is coupled to proton movement
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	plasma membrane	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	In contrast to tonoplast localization in plants cells, OsSPX-MFS3 was localised to the plasma membrane when expressed in both yeast and oocytes
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	Pi	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	At high external Pi concentration, OsSPX-MFS3 could partially complement the yeast (Saccharomyces cerevisiae) mutant strain EY917 under pH 5
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	Pi	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	In oocytes, OsSPX-MFS3 was shown to facilitate Pi influx or efflux depending on the external pH and Pi concentrations
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	Pi	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	Overexpression of OsSPX-MFS3 results in decreased Pi concentration in the vacuole of rice (Oryza sativa) tissues
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	Pi	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	We conclude that OsSPX-MFS3 is a low affinity Pi transporter that mediates Pi efflux from the vacuole into cytosol and is coupled to proton movement
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	pi	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	At high external Pi concentration, OsSPX-MFS3 could partially complement the yeast (Saccharomyces cerevisiae) mutant strain EY917 under pH 5
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	pi	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	In oocytes, OsSPX-MFS3 was shown to facilitate Pi influx or efflux depending on the external pH and Pi concentrations
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	pi	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	Overexpression of OsSPX-MFS3 results in decreased Pi concentration in the vacuole of rice (Oryza sativa) tissues
OsSPX-MFS3|OsPSS3	Os06g0129400	LOC_Os06g03860	pi	OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice.	We conclude that OsSPX-MFS3 is a low affinity Pi transporter that mediates Pi efflux from the vacuole into cytosol and is coupled to proton movement
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	Suppression of OsSPX1 by RNA interference resulted in severe signs of toxicity caused by the over-accumulation of Pi, similar to that found in OsPHR2 (phosphate starvation response transcription factor 2) overexpressors and pho2 (phosphate-responsive mutant 2)
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	Expression of OsPT2 (phosphate transporter 2) and OsPT8 was significantly induced in OsSPX1-RNAi (OsSPX1-Ri) plants, suggesting that over-accumulation of Pi in OsSPX1-Ri plants results from an increase in Pi transport
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	This suggests that OsSPX1 acts via a negative feedback loop to optimize growth under phosphate-limited conditions
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	Involvement of OsSPX1 in phosphate homeostasis in rice
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphorus	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	Recently, Arabidopsis AtSPX family genes have been found to possess diverse functions in plant tolerance to phosphorus starvation, and OsSPX1 is involved in phosphate homeostasis in rice and optimizes growth under phosphate-limited conditions through a negative feedback loop
OsSPX1	Os06g0603600	LOC_Os06g40120	root	Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice	Among them, five genes, OsSPX1, 2, 3, 5 and 6 are responsive to Pi-starvation in shoots and/or in roots
OsSPX1	Os06g0603600	LOC_Os06g40120	growth	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	Recently, Arabidopsis AtSPX family genes have been found to possess diverse functions in plant tolerance to phosphorus starvation, and OsSPX1 is involved in phosphate homeostasis in rice and optimizes growth under phosphate-limited conditions through a negative feedback loop
OsSPX1	Os06g0603600	LOC_Os06g40120	root	Involvement of OsSPX1 in phosphate homeostasis in rice	We show here that a rice (Oryza sativa) SPX gene, OsSPX1, is specifically induced by Pi starvation in roots
OsSPX1	Os06g0603600	LOC_Os06g40120	oxidative	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	In the present study, we generated rice antisense and sense transgenic lines of OsSPX1 and found that down-regulation of OsSPX1 caused high sensitivity to cold and oxidative stresses in rice seedlings
OsSPX1	Os06g0603600	LOC_Os06g40120	oxidative	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Our study indicated that OsSPX1 may be involved in cross-talks between oxidative stress, cold stress and phosphate homeostasis in rice seedling leaves
OsSPX1	Os06g0603600	LOC_Os06g40120	oxidative	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice	OsSPX1 acts as a repressor in the OsPHR2-mediated phosphate-signaling pathway
OsSPX1	Os06g0603600	LOC_Os06g40120	seedling	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	Transgenic tobacco plants with constitutive expression of OsSPX1 were more tolerant to cold stress than were wild-type plants, and showed better seedling survival and reduced cellular electrolyte leakage
OsSPX1	Os06g0603600	LOC_Os06g40120	root	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Our data also show that OsSPX1 is a negative regulator of OsPHR2 and is involved in the feedback of Pi-signaling network in roots that is defined by OsPHR2 and OsPHO2
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
OsSPX1	Os06g0603600	LOC_Os06g40120	cold stress	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	Transgenic tobacco plants with constitutive expression of OsSPX1 were more tolerant to cold stress than were wild-type plants, and showed better seedling survival and reduced cellular electrolyte leakage
OsSPX1	Os06g0603600	LOC_Os06g40120	cold stress	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	From real-time reverse transcriptase-polymerase chain reaction analysis, several Pi starvation-related genes, such as AtSPX1 (orthologue of OsSPX1), PHO2, PLDZ2 and ATSIZ1, showed differential expression between wild-type and transgenic plants during cold stress
OsSPX1	Os06g0603600	LOC_Os06g40120	cold stress	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	Our results indicate that OsSPX1 may play an important role in linking cold stress and Pi starvation signal transduction pathways
OsSPX1	Os06g0603600	LOC_Os06g40120	transporter	Involvement of OsSPX1 in phosphate homeostasis in rice	Expression of OsPT2 (phosphate transporter 2) and OsPT8 was significantly induced in OsSPX1-RNAi (OsSPX1-Ri) plants, suggesting that over-accumulation of Pi in OsSPX1-Ri plants results from an increase in Pi transport
OsSPX1	Os06g0603600	LOC_Os06g40120	transcription factor	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Transcript analysis revealed that Pi-responsive genes--Phosphate starvation (OsIPS)1 and OsIPS2, SYG1/Pho81/XPR1(OsSPX1), Sulfoquinovosyldiacylglycerol 2 (OsSQD2), R2R3 MYB transcription factor (OsMYB2P-1) and Transport Inhibitor Response1 (OsTIR1)--were more abundant in the osarf12 and osarf12/25 mutants under +Pi/-Pi conditions
OsSPX1	Os06g0603600	LOC_Os06g40120	pi	Involvement of OsSPX1 in phosphate homeostasis in rice	We show here that a rice (Oryza sativa) SPX gene, OsSPX1, is specifically induced by Pi starvation in roots
OsSPX1	Os06g0603600	LOC_Os06g40120	pi	Involvement of OsSPX1 in phosphate homeostasis in rice	Expression of OsPT2 (phosphate transporter 2) and OsPT8 was significantly induced in OsSPX1-RNAi (OsSPX1-Ri) plants, suggesting that over-accumulation of Pi in OsSPX1-Ri plants results from an increase in Pi transport
OsSPX1	Os06g0603600	LOC_Os06g40120	pi	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsSPX1	Os06g0603600	LOC_Os06g40120	transcription factor	Involvement of OsSPX1 in phosphate homeostasis in rice	Suppression of OsSPX1 by RNA interference resulted in severe signs of toxicity caused by the over-accumulation of Pi, similar to that found in OsPHR2 (phosphate starvation response transcription factor 2) overexpressors and pho2 (phosphate-responsive mutant 2)
OsSPX1	Os06g0603600	LOC_Os06g40120	pi	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	To further establish a cause-and-effect relationship between intracellular Pi level and cold acclimatization in transgenic plants, we generated transgenic Arabidopsis plants with constitutive expression of OsSPX1
OsSPX1	Os06g0603600	LOC_Os06g40120	pi	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	From real-time reverse transcriptase-polymerase chain reaction analysis, several Pi starvation-related genes, such as AtSPX1 (orthologue of OsSPX1), PHO2, PLDZ2 and ATSIZ1, showed differential expression between wild-type and transgenic plants during cold stress
OsSPX1	Os06g0603600	LOC_Os06g40120	pi	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	Our results indicate that OsSPX1 may play an important role in linking cold stress and Pi starvation signal transduction pathways
OsSPX1	Os06g0603600	LOC_Os06g40120	growth	Involvement of OsSPX1 in phosphate homeostasis in rice	This suggests that OsSPX1 acts via a negative feedback loop to optimize growth under phosphate-limited conditions
OsSPX1	Os06g0603600	LOC_Os06g40120	seedling	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	In the present study, we generated rice antisense and sense transgenic lines of OsSPX1 and found that down-regulation of OsSPX1 caused high sensitivity to cold and oxidative stresses in rice seedlings
OsSPX1	Os06g0603600	LOC_Os06g40120	seedling	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Compared to wild-type and OsSPX1-sense transgenic lines, more hydrogen peroxide accumulated in seedling leaves of OsSPX1-antisense transgenic lines for controls, cold and methyl viologen (MV) treatments
OsSPX1	Os06g0603600	LOC_Os06g40120	seedling	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Our study indicated that OsSPX1 may be involved in cross-talks between oxidative stress, cold stress and phosphate homeostasis in rice seedling leaves
OsSPX1	Os06g0603600	LOC_Os06g40120	seedling	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings
OsSPX1	Os06g0603600	LOC_Os06g40120	homeostasis	Involvement of OsSPX1 in phosphate homeostasis in rice	Involvement of OsSPX1 in phosphate homeostasis in rice
OsSPX1	Os06g0603600	LOC_Os06g40120	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Previous reports have demonstrated that over-expression of OsPHR2 (the homolog of AtPHR1) and knockdown of OsSPX1 result in accumulation of excessive shoot Pi in rice
OsSPX1	Os06g0603600	LOC_Os06g40120	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the regulation on expression of OsPT2 by OsPHR2 and the accumulation of excess shoot Pi, but it does not suppress induction of OsPT2 or the accumulation of excessive shoot Pi in the Ospho2 mutant
OsSPX1	Os06g0603600	LOC_Os06g40120	shoot	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
OsSPX1	Os06g0603600	LOC_Os06g40120	leaf	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Our previous work showed that constitutive overexpression of OsSPX1 in tobacco and Arabidopsis plants improved cold tolerance while also decreasing total leaf Pi
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Rice SPX domain gene, OsSPX1, plays an important role in the phosphate (Pi) signaling network
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Our study indicated that OsSPX1 may be involved in cross-talks between oxidative stress, cold stress and phosphate homeostasis in rice seedling leaves
OsSPX1	Os06g0603600	LOC_Os06g40120	cold stress	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Our study indicated that OsSPX1 may be involved in cross-talks between oxidative stress, cold stress and phosphate homeostasis in rice seedling leaves
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	Recently, Arabidopsis AtSPX family genes have been found to possess diverse functions in plant tolerance to phosphorus starvation, and OsSPX1 is involved in phosphate homeostasis in rice and optimizes growth under phosphate-limited conditions through a negative feedback loop
OsSPX1	Os06g0603600	LOC_Os06g40120	cold tolerance	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Our previous work showed that constitutive overexpression of OsSPX1 in tobacco and Arabidopsis plants improved cold tolerance while also decreasing total leaf Pi
OsSPX1	Os06g0603600	LOC_Os06g40120	pi	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	Previous reports have demonstrated that over-expression of OsPHR2 (the homolog of AtPHR1) and knockdown of OsSPX1 result in accumulation of excessive shoot Pi in rice
OsSPX1	Os06g0603600	LOC_Os06g40120	pi	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the regulation on expression of OsPT2 by OsPHR2 and the accumulation of excess shoot Pi, but it does not suppress induction of OsPT2 or the accumulation of excessive shoot Pi in the Ospho2 mutant
OsSPX1	Os06g0603600	LOC_Os06g40120	homeostasis	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings	Our study indicated that OsSPX1 may be involved in cross-talks between oxidative stress, cold stress and phosphate homeostasis in rice seedling leaves
OsSPX1	Os06g0603600	LOC_Os06g40120	homeostasis	Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana	Recently, Arabidopsis AtSPX family genes have been found to possess diverse functions in plant tolerance to phosphorus starvation, and OsSPX1 is involved in phosphate homeostasis in rice and optimizes growth under phosphate-limited conditions through a negative feedback loop
OsSPX1	Os06g0603600	LOC_Os06g40120	homeostasis	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Transcript analysis revealed that Pi-responsive genes--Phosphate starvation (OsIPS)1 and OsIPS2, SYG1/Pho81/XPR1(OsSPX1), Sulfoquinovosyldiacylglycerol 2 (OsSQD2), R2R3 MYB transcription factor (OsMYB2P-1) and Transport Inhibitor Response1 (OsTIR1)--were more abundant in the osarf12 and osarf12/25 mutants under +Pi/-Pi conditions
OsSPX1	Os06g0603600	LOC_Os06g40120	shoot	Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice	Among them, five genes, OsSPX1, 2, 3, 5 and 6 are responsive to Pi-starvation in shoots and/or in roots
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate starvation response	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate starvation	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
OsSPX1	Os06g0603600	LOC_Os06g40120	phosphate	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
OsSPX1	Os06g0603600	LOC_Os06g40120	pollen	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Through examination of anthers and pollens of the transgenic and wild-type plants by microscopy, we found that the antisense of OsSPX1 gene led to semi-male sterility, with lacking of mature pollen grains and phenotypes with a disordered surface of anthers and pollens
OsSPX1	Os06g0603600	LOC_Os06g40120	pollen	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield
OsSPX1	Os06g0603600	LOC_Os06g40120	grain	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.
OsSPX1	Os06g0603600	LOC_Os06g40120	grain	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Based on investigation of OsSPX1 antisense and sense transgenic rice lines in the paddy fields, we discovered that the down-regulation of OsSPX1 caused reduction of seed-setting rate and filled grain number
OsSPX1	Os06g0603600	LOC_Os06g40120	grain	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield
OsSPX1	Os06g0603600	LOC_Os06g40120	anther	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	The down-regulation of OsSPX1 significantly affected expression of genes involved in carbohydrate metabolism and sugar transport, anther development, cell cycle, etc
OsSPX1	Os06g0603600	LOC_Os06g40120	anther	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield
OsSPX1	Os06g0603600	LOC_Os06g40120	development	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield
OsSPX1	Os06g0603600	LOC_Os06g40120	grain yield	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.
OsSPX1	Os06g0603600	LOC_Os06g40120	grain yield	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield
OsSPX1	Os06g0603600	LOC_Os06g40120	grain number	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Based on investigation of OsSPX1 antisense and sense transgenic rice lines in the paddy fields, we discovered that the down-regulation of OsSPX1 caused reduction of seed-setting rate and filled grain number
OsSPX1	Os06g0603600	LOC_Os06g40120	yield	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.
OsSPX1	Os06g0603600	LOC_Os06g40120	yield	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield
OsSPX1	Os06g0603600	LOC_Os06g40120	reproductive	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	In this study, we focused on the potential function of OsSPX1 during rice reproductive phase
OsSPX1	Os06g0603600	LOC_Os06g40120	cell cycle	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	The down-regulation of OsSPX1 significantly affected expression of genes involved in carbohydrate metabolism and sugar transport, anther development, cell cycle, etc
OsSPX1	Os06g0603600	LOC_Os06g40120	sugar	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	The down-regulation of OsSPX1 significantly affected expression of genes involved in carbohydrate metabolism and sugar transport, anther development, cell cycle, etc
OsSPX1	Os06g0603600	LOC_Os06g40120	sugar	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield
OsSPX1	Os06g0603600	LOC_Os06g40120	anther development	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	The down-regulation of OsSPX1 significantly affected expression of genes involved in carbohydrate metabolism and sugar transport, anther development, cell cycle, etc
OsSPX1	Os06g0603600	LOC_Os06g40120	male sterility	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.
OsSPX1	Os06g0603600	LOC_Os06g40120	male sterility	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Through examination of anthers and pollens of the transgenic and wild-type plants by microscopy, we found that the antisense of OsSPX1 gene led to semi-male sterility, with lacking of mature pollen grains and phenotypes with a disordered surface of anthers and pollens
OsSPX1	Os06g0603600	LOC_Os06g40120	male sterility	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield
OsSPX1	Os06g0603600	LOC_Os06g40120	pollen development	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield
OsSPX2	Os02g0202200	LOC_Os02g10780	phosphate starvation response	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
OsSPX2	Os02g0202200	LOC_Os02g10780	phosphate starvation	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
OsSPX2	Os02g0202200	LOC_Os02g10780	phosphate	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
OsSPX2	Os02g0202200	LOC_Os02g10780	leaf	Transcription factor OsNAC016 negatively regulates phosphate-starvation response in rice.	 Together, our findings demonstrate that OsNAC016 negatively regulates rice phosphate-starvation response and leaf inclination by activating OsSPX2 expression under Pi-starvation conditions
OsSPX2	Os02g0202200	LOC_Os02g10780	Pi	Transcription factor OsNAC016 negatively regulates phosphate-starvation response in rice.	 Further, we found that Pi starvation enhanced OsNAC016 binding to the OsSPX2 promoter, thus strongly promoting OsSPX2 expression
OsSPX2	Os02g0202200	LOC_Os02g10780	pi	Transcription factor OsNAC016 negatively regulates phosphate-starvation response in rice.	 Further, we found that Pi starvation enhanced OsNAC016 binding to the OsSPX2 promoter, thus strongly promoting OsSPX2 expression
OsSPX2	Os02g0202200	LOC_Os02g10780	 pi 	Transcription factor OsNAC016 negatively regulates phosphate-starvation response in rice.	 Further, we found that Pi starvation enhanced OsNAC016 binding to the OsSPX2 promoter, thus strongly promoting OsSPX2 expression
OsSPX3	Os10g0392600	LOC_Os10g25310	shoot	Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice	Overexpression of OsSPX3 downregulates OsSPX5 in shoots under Pi-sufficiency
OsSPX4	Os03g0827500	LOC_Os03g61200	phosphate	SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice	SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice
OsSPX4	Os03g0827500	LOC_Os03g61200	phosphate signaling	SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice	SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice
OsSPX4	Os03g0827500	LOC_Os03g61200	phosphate homeostasis	SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice	SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice
OsSPY	Os08g0559300	LOC_Os08g44510	dwarf	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	Two genes identified from the cDNA-RAPD were OsSPY and 14-3-3, possibly associated with stem height variations of the semidwarf and spindly mutants, respectively
OsSPY	Os08g0559300	LOC_Os08g44510	dwarf	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	These results indicate that changes of OsSPY and 14-3-3 expression could affect internode elongation and cause the phenotypic changes of semidwarf and spindly rice mutants, respectively
OsSPY	Os08g0559300	LOC_Os08g44510	lamina	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	In addition to the GA-related phenotypes, OsSPY antisense and RNAi plants showed increased lamina joint bending, which is a brassinosteroid-related phenotype, indicating that OsSPY may play roles both in GA signaling and in the brassinosteroid pathway
OsSPY	Os08g0559300	LOC_Os08g44510	stem	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	Two genes identified from the cDNA-RAPD were OsSPY and 14-3-3, possibly associated with stem height variations of the semidwarf and spindly mutants, respectively
OsSPY	Os08g0559300	LOC_Os08g44510	reproductive	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	Expression analysis of OsSPY, 14-3-3, RSG, KO, and SLR1 was confirmed in rice internode tissues during the reproductive stage of the plants by semi-quantitative RT-PCR technique
OsSPY	Os08g0559300	LOC_Os08g44510	brassinosteroid	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	In addition to the GA-related phenotypes, OsSPY antisense and RNAi plants showed increased lamina joint bending, which is a brassinosteroid-related phenotype, indicating that OsSPY may play roles both in GA signaling and in the brassinosteroid pathway
OsSPY	Os08g0559300	LOC_Os08g44510	gibberellin	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	The OsSPY gene encoded the SPY protein which is considered to be a negative regulator of gibberellin (GA)
OsSPY	Os08g0559300	LOC_Os08g44510	ga	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	To understand the function of SPY in GA signaling in rice, we isolated a rice SPINDLY homolog (OsSPY) and produced knockdown transgenic plants in which OsSPY expression was reduced by introducing its antisense or RNAi construct
OsSPY	Os08g0559300	LOC_Os08g44510	ga	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	In knockdown plants, the enhanced elongation of lower internodes was correlated with decreased levels of OsSPY expression, similar to the spindly phenotype of Arabidopsis spy mutants, suggesting that OsSPY also functions as a negative factor in GA signaling in rice
OsSPY	Os08g0559300	LOC_Os08g44510	ga	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	The suppressive function of OsSPY in GA signaling was supported by the findings that the dwarfism was partially rescued and OsGA20ox2 (GA20 oxidase) expression was reduced in GA-deficient and GA-insensitive mutants by the knockdown of OsSPY function
OsSPY	Os08g0559300	LOC_Os08g44510	ga	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	This indicates that the function of OsSPY in GA signaling is not via changes in the amount or stability of SLR1, but probably involves control of the suppressive function of SLR1
OsSPY	Os08g0559300	LOC_Os08g44510	ga	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	In addition to the GA-related phenotypes, OsSPY antisense and RNAi plants showed increased lamina joint bending, which is a brassinosteroid-related phenotype, indicating that OsSPY may play roles both in GA signaling and in the brassinosteroid pathway
OsSPY	Os08g0559300	LOC_Os08g44510	dwarf	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	The suppressive function of OsSPY in GA signaling was supported by the findings that the dwarfism was partially rescued and OsGA20ox2 (GA20 oxidase) expression was reduced in GA-deficient and GA-insensitive mutants by the knockdown of OsSPY function
OsSPY	Os08g0559300	LOC_Os08g44510	height	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	Two genes identified from the cDNA-RAPD were OsSPY and 14-3-3, possibly associated with stem height variations of the semidwarf and spindly mutants, respectively
OsSPY	Os08g0559300	LOC_Os08g44510	height	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants
OsSPY	Os08g0559300	LOC_Os08g44510	breeding	GWAS with principal component analysis identifies a gene comprehensively controlling rice architecture.	Further population genetics analysis demonstrated that the functional allele of OsSPY associated with semidwarfism and small panicles was selected in the process of rice breeding
OsSQD1	Os05g0387200	LOC_Os05g32140	chloroplast	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	 Transient expression analysis showed that OsSQD1 is located in the chloroplast
OsSQD1	Os05g0387200	LOC_Os05g32140	development	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	 The inhibitory effects of the OsSQD1 mutation were also evident in the development of reproductive tissue
OsSQD1	Os05g0387200	LOC_Os05g32140	reproductive	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	 The inhibitory effects of the OsSQD1 mutation were also evident in the development of reproductive tissue
OsSQD1	Os05g0387200	LOC_Os05g32140	homeostasis	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	 Furthermore, OsSQD1 differently affects lipid composition under different Pi regime affects sulfur (S) homeostasis
OsSQD1	Os05g0387200	LOC_Os05g32140	phosphate	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.
OsSQD1	Os05g0387200	LOC_Os05g32140	Pi	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	 Furthermore, OsSQD1 differently affects lipid composition under different Pi regime affects sulfur (S) homeostasis
OsSQD1	Os05g0387200	LOC_Os05g32140	Pi	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	 Together, the study revealed that OsSQD1 affects Pi and S homeostasis, and lipid composition in response to Pi deprivation
OsSQD1	Os05g0387200	LOC_Os05g32140	 pi 	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	 Furthermore, OsSQD1 differently affects lipid composition under different Pi regime affects sulfur (S) homeostasis
OsSQD1	Os05g0387200	LOC_Os05g32140	 pi 	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	 Together, the study revealed that OsSQD1 affects Pi and S homeostasis, and lipid composition in response to Pi deprivation
OsSQD1	Os05g0387200	LOC_Os05g32140	root	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 The root phenotype observation of different OsSQD1 transgenic lines suggests that the knockout/down of OsSQD1 inhibits the formation and growth of lateral roots under different Pi conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	root	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 To summarize, the present study demonstrates that OsSQD1 plays a key role in the maintenance of phospholipid and glycolipid composition in Pi-deprived rice roots, which may influence root growth and development under Pi-deprived conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	growth	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 The root phenotype observation of different OsSQD1 transgenic lines suggests that the knockout/down of OsSQD1 inhibits the formation and growth of lateral roots under different Pi conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	growth	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 To summarize, the present study demonstrates that OsSQD1 plays a key role in the maintenance of phospholipid and glycolipid composition in Pi-deprived rice roots, which may influence root growth and development under Pi-deprived conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	development	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 To summarize, the present study demonstrates that OsSQD1 plays a key role in the maintenance of phospholipid and glycolipid composition in Pi-deprived rice roots, which may influence root growth and development under Pi-deprived conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	root growth	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 To summarize, the present study demonstrates that OsSQD1 plays a key role in the maintenance of phospholipid and glycolipid composition in Pi-deprived rice roots, which may influence root growth and development under Pi-deprived conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	lateral root	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 In this study, the expression pattern of different zones in roots of OsSQD1 in response to different Pi conditions is examined, and it is found that OsSQD1 is highly expressed in lateral roots under Pi-sufficient and -deficient conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	lateral root	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 The root phenotype observation of different OsSQD1 transgenic lines suggests that the knockout/down of OsSQD1 inhibits the formation and growth of lateral roots under different Pi conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	Pi	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 In this study, the expression pattern of different zones in roots of OsSQD1 in response to different Pi conditions is examined, and it is found that OsSQD1 is highly expressed in lateral roots under Pi-sufficient and -deficient conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	Pi	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 The root phenotype observation of different OsSQD1 transgenic lines suggests that the knockout/down of OsSQD1 inhibits the formation and growth of lateral roots under different Pi conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	pi	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 In this study, the expression pattern of different zones in roots of OsSQD1 in response to different Pi conditions is examined, and it is found that OsSQD1 is highly expressed in lateral roots under Pi-sufficient and -deficient conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	pi	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 The root phenotype observation of different OsSQD1 transgenic lines suggests that the knockout/down of OsSQD1 inhibits the formation and growth of lateral roots under different Pi conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	 pi 	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 In this study, the expression pattern of different zones in roots of OsSQD1 in response to different Pi conditions is examined, and it is found that OsSQD1 is highly expressed in lateral roots under Pi-sufficient and -deficient conditions
OsSQD1	Os05g0387200	LOC_Os05g32140	 pi 	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	 The root phenotype observation of different OsSQD1 transgenic lines suggests that the knockout/down of OsSQD1 inhibits the formation and growth of lateral roots under different Pi conditions
OsSQD2|OsSQD2.2	Os01g0142300	LOC_Os01g04920	phosphate	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsSQD2|OsSQD2.2	Os01g0142300	LOC_Os01g04920	pi	Involvement of OsSPX1 in phosphate homeostasis in rice	In contrast, overexpression of OsSPX1 suppressed the induction of expression by Pi starvation of all 10 phosphate starvation-induced genes tested: IPS1 (induced by phosphate starvation 1), IPS2, OsPAP10 (purple acid phosphatase 10), OsSQD2 (sulfoquinovosyldiacylglycerol 2), miR399d and miR399j (microRNA 399), OsPT2, OsPT3, OsPT6 and OsPT8
OsSR45	Os01g0959000	LOC_Os01g72890	abiotic stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	Here, we show that OsFKBP20-1b, belonging to the immunophilin family, interacts with the splicing factor OsSR45 in both nuclear speckles and cytoplasmic foci and plays an essential role in post-transcriptional regulation of abiotic stress response
OsSR45	Os01g0959000	LOC_Os01g72890	stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.
OsSR45	Os01g0959000	LOC_Os01g72890	stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	Here, we show that OsFKBP20-1b, belonging to the immunophilin family, interacts with the splicing factor OsSR45 in both nuclear speckles and cytoplasmic foci and plays an essential role in post-transcriptional regulation of abiotic stress response
OsSR45	Os01g0959000	LOC_Os01g72890	biotic stress	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	Here, we show that OsFKBP20-1b, belonging to the immunophilin family, interacts with the splicing factor OsSR45 in both nuclear speckles and cytoplasmic foci and plays an essential role in post-transcriptional regulation of abiotic stress response
OsSR45	Os01g0959000	LOC_Os01g72890	stress response	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.
OsSR45	Os01g0959000	LOC_Os01g72890	stress response	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	Here, we show that OsFKBP20-1b, belonging to the immunophilin family, interacts with the splicing factor OsSR45 in both nuclear speckles and cytoplasmic foci and plays an essential role in post-transcriptional regulation of abiotic stress response
OsSRDP	Os04g0690500	LOC_Os04g59420	drought	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Based on bioinformatics studies, we identified four potential candidate interaction partners for LOC_Os04g59420, of which two genes (LOC_Os05g09640 and LOC_Os06g50370) showed co-expression under biotic and drought stress along with OsSRDP
OsSRDP	Os04g0690500	LOC_Os04g59420	stress	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Based on bioinformatics studies, we identified four potential candidate interaction partners for LOC_Os04g59420, of which two genes (LOC_Os05g09640 and LOC_Os06g50370) showed co-expression under biotic and drought stress along with OsSRDP
OsSRDP	Os04g0690500	LOC_Os04g59420	stress	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Altogether, our findings established that stress-inducible expression of OsSRDP can significantly enhance tolerance to multiple abiotic stresses and a biotic stress
OsSRDP	Os04g0690500	LOC_Os04g59420	drought stress	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Based on bioinformatics studies, we identified four potential candidate interaction partners for LOC_Os04g59420, of which two genes (LOC_Os05g09640 and LOC_Os06g50370) showed co-expression under biotic and drought stress along with OsSRDP
OsSRDP	Os04g0690500	LOC_Os04g59420	drought stress 	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Based on bioinformatics studies, we identified four potential candidate interaction partners for LOC_Os04g59420, of which two genes (LOC_Os05g09640 and LOC_Os06g50370) showed co-expression under biotic and drought stress along with OsSRDP
OsSRDP	Os04g0690500	LOC_Os04g59420	tolerance	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Altogether, our findings established that stress-inducible expression of OsSRDP can significantly enhance tolerance to multiple abiotic stresses and a biotic stress
OsSRDP	Os04g0690500	LOC_Os04g59420	cold stress	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 The three independent homozygous transgenic plants (AtRd29A::OsSRDP rice transformants) showed better resilience to drought, salinity, and cold stresses, but not heat stress, as compared to the non-transformed PS2, which corresponded with their respective relative transcript abundance for OsSRDP
OsSRDP	Os04g0690500	LOC_Os04g59420	cold stress	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Under cold stress, OsSRDP transgenic lines illustrated minimal cell membrane injury compared to PS2
OsSRDP	Os04g0690500	LOC_Os04g59420	abiotic stress	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Altogether, our findings established that stress-inducible expression of OsSRDP can significantly enhance tolerance to multiple abiotic stresses and a biotic stress
OsSRDP	Os04g0690500	LOC_Os04g59420	biotic stress	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Altogether, our findings established that stress-inducible expression of OsSRDP can significantly enhance tolerance to multiple abiotic stresses and a biotic stress
OsSRDP	Os04g0690500	LOC_Os04g59420	cold	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 The three independent homozygous transgenic plants (AtRd29A::OsSRDP rice transformants) showed better resilience to drought, salinity, and cold stresses, but not heat stress, as compared to the non-transformed PS2, which corresponded with their respective relative transcript abundance for OsSRDP
OsSRDP	Os04g0690500	LOC_Os04g59420	cold	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 Under cold stress, OsSRDP transgenic lines illustrated minimal cell membrane injury compared to PS2
OsSRDP	Os04g0690500	LOC_Os04g59420	heat stress	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 The three independent homozygous transgenic plants (AtRd29A::OsSRDP rice transformants) showed better resilience to drought, salinity, and cold stresses, but not heat stress, as compared to the non-transformed PS2, which corresponded with their respective relative transcript abundance for OsSRDP
OsSRDP	Os04g0690500	LOC_Os04g59420	Heat Stress	Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice.	 The three independent homozygous transgenic plants (AtRd29A::OsSRDP rice transformants) showed better resilience to drought, salinity, and cold stresses, but not heat stress, as compared to the non-transformed PS2, which corresponded with their respective relative transcript abundance for OsSRDP
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	oxidative stress	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Interestingly, the OsSRFP1-overexpressing plants were less tolerant to salt, cold and oxidative stresses than wild type plants; while the RNA interference silencing of OsSRFP1 plants were more tolerant than wild type without yield penalty
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	yield	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Interestingly, the OsSRFP1-overexpressing plants were less tolerant to salt, cold and oxidative stresses than wild type plants; while the RNA interference silencing of OsSRFP1 plants were more tolerant than wild type without yield penalty
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	oxidative	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Interestingly, the OsSRFP1-overexpressing plants were less tolerant to salt, cold and oxidative stresses than wild type plants; while the RNA interference silencing of OsSRFP1 plants were more tolerant than wild type without yield penalty
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	abiotic stress	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	abiotic stress	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Taken together, our results demonstrate that OsSRFP1 may have dual functions in post-translational and transcriptional regulations in modulating abiotic stress responses in rice, at least in part, by negatively regulating antioxidant enzymes-mediated reactive oxygen species removal
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	culm	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	OsSRFP1 was ubiquitously expressed in various rice organs, with the higher expression levels in roots, panicles and culm nodes
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	tolerance	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	stress	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	stress	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Taken together, our results demonstrate that OsSRFP1 may have dual functions in post-translational and transcriptional regulations in modulating abiotic stress responses in rice, at least in part, by negatively regulating antioxidant enzymes-mediated reactive oxygen species removal
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	abscisic acid	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	The transcript of OsSRFP1 was induced by cold, dehydration, salt, H2O2 and abscisic acid treatments
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	stress tolerance	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	biotic stress	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	biotic stress	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Taken together, our results demonstrate that OsSRFP1 may have dual functions in post-translational and transcriptional regulations in modulating abiotic stress responses in rice, at least in part, by negatively regulating antioxidant enzymes-mediated reactive oxygen species removal
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	stress response	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Taken together, our results demonstrate that OsSRFP1 may have dual functions in post-translational and transcriptional regulations in modulating abiotic stress responses in rice, at least in part, by negatively regulating antioxidant enzymes-mediated reactive oxygen species removal
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	Ubiquitin	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	Ubiquitin	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	In vitro ubiquitination assays showed that OsSRFP1 possessed E3 ubiquitin ligase activity and the intact RING domain was essential for the activity
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	reactive oxygen species	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Taken together, our results demonstrate that OsSRFP1 may have dual functions in post-translational and transcriptional regulations in modulating abiotic stress responses in rice, at least in part, by negatively regulating antioxidant enzymes-mediated reactive oxygen species removal
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	Pi	Two RING-finger ubiquitin E3 ligases regulate the degradation of SPX4, the internal phosphate sensor, for phosphate homeostasis and signaling in rice.	Consistent with this biochemical function of SDEL1 and SDEL2, enhancing the expression of SDEL1 and SDEL2 results in Pi over-accumulation and induces Pi-starvation signaling even under Pi-sufficient conditions
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	Pi	Two RING-finger ubiquitin E3 ligases regulate the degradation of SPX4, the internal phosphate sensor, for phosphate homeostasis and signaling in rice.	Therefore SDEL1 and SDEL2 facilitate the degradation of SPX4 to modulate PHR2 activity and regulate Pi-homeostasis and Pi-signaling in response to external Pi availability in rice
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	pi	Two RING-finger ubiquitin E3 ligases regulate the degradation of SPX4, the internal phosphate sensor, for phosphate homeostasis and signaling in rice.	Consistent with this biochemical function of SDEL1 and SDEL2, enhancing the expression of SDEL1 and SDEL2 results in Pi over-accumulation and induces Pi-starvation signaling even under Pi-sufficient conditions
OsSRFP1|SDEL2	Os03g0348900	LOC_Os03g22680	pi	Two RING-finger ubiquitin E3 ligases regulate the degradation of SPX4, the internal phosphate sensor, for phosphate homeostasis and signaling in rice.	Therefore SDEL1 and SDEL2 facilitate the degradation of SPX4 to modulate PHR2 activity and regulate Pi-homeostasis and Pi-signaling in response to external Pi availability in rice
OsSRK	Os02g0194400	LOC_Os02g10100	cadmium tolerance	MicroRNA390 Is Involved in Cadmium Tolerance and Accumulation in Rice.	MicroRNA390 Is Involved in Cadmium Tolerance and Accumulation in Rice.
OsSRK	Os02g0194400	LOC_Os02g10100	cadmium tolerance	MicroRNA390 Is Involved in Cadmium Tolerance and Accumulation in Rice.	Consequently, the target gene of miR390, OsSRK was dramatically induced by Cd treatment.
OsSRLK	Os01g0223600	LOC_Os01g12390	chloroplast	Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.	Furthermore, ultrastructural analysis revealed that ossrlk leaves maintained the chloroplast structure with intact grana stacks during dark incubation; however, the retained green color and preserved chloroplast structures of ossrlk did not enhance the photosynthetic competence during age-dependent senescence in autumn
OsSRLK	Os01g0223600	LOC_Os01g12390	senescence	Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.	The detached leaves of ossrlk mutant (ossrlk) contained more green pigment than those of the wild type (WT) during dark-induced senescence (DIS)
OsSRLK	Os01g0223600	LOC_Os01g12390	senescence	Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.	Furthermore, ultrastructural analysis revealed that ossrlk leaves maintained the chloroplast structure with intact grana stacks during dark incubation; however, the retained green color and preserved chloroplast structures of ossrlk did not enhance the photosynthetic competence during age-dependent senescence in autumn
OsSRLK	Os01g0223600	LOC_Os01g12390	panicle	Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.	In ossrlk, the panicles per plant was increased and the spikelets per panicle were reduced, resulting in similar grain productivity between WT and ossrlk
OsSRLK	Os01g0223600	LOC_Os01g12390	grain	Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.	In ossrlk, the panicles per plant was increased and the spikelets per panicle were reduced, resulting in similar grain productivity between WT and ossrlk
OsSRLK	Os01g0223600	LOC_Os01g12390	spikelets per panicle	Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.	In ossrlk, the panicles per plant was increased and the spikelets per panicle were reduced, resulting in similar grain productivity between WT and ossrlk
OsSRLK	Os01g0223600	LOC_Os01g12390	chlorophyll biogenesis	Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.	By transcriptome analysis using RNA sequencing, genes related to phytohormone, senescence, and chlorophyll biogenesis were significantly altered in ossrlk compared to those in WT during DIS
OsSRLK	Os01g0223600	LOC_Os01g12390	photosystem	Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.	HPLC and immunoblot assay revealed that degradation of chlorophyll and photosystem II proteins was repressed in ossrlk during DIS
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	tolerance	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	tolerance	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Further, co-transformation of both OsSRO1a and OsRBD1 in yeast conferred enhanced tolerance toward salinity, osmotic, and methylglyoxal treatments
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	tolerance	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	abiotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	abiotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Transcript profiling under different stress conditions revealed co-regulation of OsSRO1a and OsRBD1 expression under some abiotic stress conditions
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	abiotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Transcript profiling under different stress conditions revealed co-regulation of OsSRO1a and OsRBD1 expression under some abiotic stress conditions
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	biotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	biotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Transcript profiling under different stress conditions revealed co-regulation of OsSRO1a and OsRBD1 expression under some abiotic stress conditions
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	biotic stress	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	stress tolerance	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	stress tolerance	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	stress response	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Our study suggests that the interaction of OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	leaf	TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate.	TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate.
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	leaf	TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate.	Knockout or knockdown of OSH15 in twi1 rescues the twisted leaf phenotype
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	transcription factor	TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate.	TWI1 encodes a transcription factor binding protein that interacts with OSH15, a class I KNOTTED1-like homeobox (KNOX) transcription factor
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	development	TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate.	Mutant twi1 plants have twisted leaves which might be caused by the compromised development and disordered patterning of bundle sheath, sclerenchyma and interveinal mesophyll cells
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	transcription factor	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	OsSRO1a also interacted with OsMYC2, a positive transcription factor in JA signaling, in both plant and yeast cells
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	ja	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	OsSRO1a also interacted with OsMYC2, a positive transcription factor in JA signaling, in both plant and yeast cells
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	ja	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	The expression of OsSRO1a was upregulated at a late phase after JA treatment
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	ja	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	These results suggest that OsSRO1a is a negative regulator of the OsMYC2-mediated JA signaling pathway in rice
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	JA	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	OsSRO1a also interacted with OsMYC2, a positive transcription factor in JA signaling, in both plant and yeast cells
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	JA	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	The expression of OsSRO1a was upregulated at a late phase after JA treatment
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	JA	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	These results suggest that OsSRO1a is a negative regulator of the OsMYC2-mediated JA signaling pathway in rice
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	JA signaling	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	OsSRO1a also interacted with OsMYC2, a positive transcription factor in JA signaling, in both plant and yeast cells
OsSRO1a|TWI1	Os10g0577800	LOC_Os10g42710	JA signaling	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	These results suggest that OsSRO1a is a negative regulator of the OsMYC2-mediated JA signaling pathway in rice
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	oxidative	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	The ossro1c-1 mutant showed resistance not only to chloroplastic oxidative stress, but also to apoplastic oxidative stress
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	oxidative	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	Here, a rice homologue of SRO (similar to RCD one), termed OsSRO1c, was identified as a direct target gene of SNAC1 (stress-responsive NAC 1) involved in the regulation of stomatal aperture and oxidative response
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	oxidative	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	Interestingly, OsSRO1c-overexpressing rice showed increased sensitivity to oxidative stress
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	oxidative	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	OsSRO1c interacted with various stress-related regulatory and functional proteins, and some of the OsSRO1c-interacting proteins are predicted to be involved in the control of stomatal aperture and oxidative stress tolerance
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	oxidative	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	oxidative	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	cell death	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	When compared with the well-characterized Arabidopsis SRO protein radical-induced cell death 1 (RCD1), OsSRO1c has considerable variation in the protein sequence, and the two genes exhibit different expression profiles under abiotic stresses
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	cold tolerance	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	However, the ossro1c-1 mutant and artificial microRNA-OsSRO1c transgenic rice were significantly impaired in cold tolerance
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	abiotic stress	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	Expression analysis of rice SRO genes in response to various abiotic stresses showed that OsSRO1c, a rice SRO gene which functions downstream of the stress-responsive transcription factor SNAC1, is the major stress-responsive gene in the rice SRO family
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	abiotic stress	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	When compared with the well-characterized Arabidopsis SRO protein radical-induced cell death 1 (RCD1), OsSRO1c has considerable variation in the protein sequence, and the two genes exhibit different expression profiles under abiotic stresses
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	abiotic stress	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	Furthermore, ossro1c-1 and rcd1 showed different responses to multiple abiotic stresses
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	abiotic stress	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	The data presented in this report provide important clues for further elucidating the molecular and biochemical mechanisms of OsSRO1c in mediating responses to multiple abiotic stresses
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	abiotic stress	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	Here, a rice homologue of SRO (similar to RCD one), termed OsSRO1c, was identified as a direct target gene of SNAC1 (stress-responsive NAC 1) involved in the regulation of stomatal aperture and oxidative response
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The loss-of-function mutant of OsSRO1c showed increased stomatal aperture and sensitivity to drought, and faster water loss compared with the wild-type plant, whereas OsSRO1c overexpression led to decreased stomatal aperture and reduced water loss
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	OsSRO1c interacted with various stress-related regulatory and functional proteins, and some of the OsSRO1c-interacting proteins are predicted to be involved in the control of stomatal aperture and oxidative stress tolerance
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomata	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	Here, a rice homologue of SRO (similar to RCD one), termed OsSRO1c, was identified as a direct target gene of SNAC1 (stress-responsive NAC 1) involved in the regulation of stomatal aperture and oxidative response
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The loss-of-function mutant of OsSRO1c showed increased stomatal aperture and sensitivity to drought, and faster water loss compared with the wild-type plant, whereas OsSRO1c overexpression led to decreased stomatal aperture and reduced water loss
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	OsSRO1c interacted with various stress-related regulatory and functional proteins, and some of the OsSRO1c-interacting proteins are predicted to be involved in the control of stomatal aperture and oxidative stress tolerance
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stomatal	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	drought	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	OsSRO1c was induced in guard cells by drought stress
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	drought	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The loss-of-function mutant of OsSRO1c showed increased stomatal aperture and sensitivity to drought, and faster water loss compared with the wild-type plant, whereas OsSRO1c overexpression led to decreased stomatal aperture and reduced water loss
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	drought	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice	The results suggest that OsSRO1c has dual roles in drought and oxidative stress tolerance of rice by promoting stomatal closure and H(2)O(2) accumulation through a novel pathway involving regulators SNAC1 and DST
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	transcription factor	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	Expression analysis of rice SRO genes in response to various abiotic stresses showed that OsSRO1c, a rice SRO gene which functions downstream of the stress-responsive transcription factor SNAC1, is the major stress-responsive gene in the rice SRO family
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	transcription factor	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	By screening an Arabidopsis transcription factor library, 29 transcription factors interacted with OsSRO1c in yeast, but only two of these transcription factors were reported to interact with RCD1, which may partly explain the different responses of the two mutants under various stresses
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	transcription factor	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	chloroplast	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors	The ossro1c-1 mutant showed resistance not only to chloroplastic oxidative stress, but also to apoplastic oxidative stress
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	senescence	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.	BOC1 may decrease cell senescence and death caused by oxidative stress
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	oxidative stress	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.	BOC1 may decrease cell senescence and death caused by oxidative stress
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	oxidative	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.	BOC1 may decrease cell senescence and death caused by oxidative stress
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	stress	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.	BOC1 may decrease cell senescence and death caused by oxidative stress
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	cell death	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.	We show that BOC1 encodes a SIMILAR TO RADICAL-INDUCED CELL DEATH ONE (SRO) protein
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	callus	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.
OsSRO1c|BOC1	Os03g0230300	LOC_Os03g12820	callus browning	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.
OsSRT1	Os04g0271000	LOC_Os04g20270	cell death	Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice	OsSRT1 RNA interference induced an increase of histone H3K9 (lysine-9 of H3) acetylation and a decrease of H3K9 dimethylation, leading to H(2)O(2) production, DNA fragmentation, cell death, and lesions mimicking plant hypersensitive responses during incompatible interactions with pathogens, whereas overexpression of OsSRT1 enhanced tolerance to oxidative stress
OsSRT1	Os04g0271000	LOC_Os04g20270	cell death	Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice	Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice
OsSRT1	Os04g0271000	LOC_Os04g20270	oxidative	Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice	OsSRT1 RNA interference induced an increase of histone H3K9 (lysine-9 of H3) acetylation and a decrease of H3K9 dimethylation, leading to H(2)O(2) production, DNA fragmentation, cell death, and lesions mimicking plant hypersensitive responses during incompatible interactions with pathogens, whereas overexpression of OsSRT1 enhanced tolerance to oxidative stress
OsSRT1	Os04g0271000	LOC_Os04g20270	seed	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression
OsSRT1	Os04g0271000	LOC_Os04g20270	seed	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	In this work, we investigated the role of OsSRT1 in rice seed development
OsSRT1	Os04g0271000	LOC_Os04g20270	seed	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	Down-regulation of OsSRT1 induced higher expression of Rice Starch Regulator1 (RSR1) and amylases genes in developing seeds, which resulted in a decrease of starch synthesis and an increase of starch degradation, leading to abnormal seed development
OsSRT1	Os04g0271000	LOC_Os04g20270	starch	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression
OsSRT1	Os04g0271000	LOC_Os04g20270	starch	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	Down-regulation of OsSRT1 induced higher expression of Rice Starch Regulator1 (RSR1) and amylases genes in developing seeds, which resulted in a decrease of starch synthesis and an increase of starch degradation, leading to abnormal seed development
OsSRT1	Os04g0271000	LOC_Os04g20270	starch	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	ChIP assay showed that OsSRT1 was required to reduce histone H3K9 acetylation on starch metabolism genes and transposons in developing seeds
OsSRT1	Os04g0271000	LOC_Os04g20270	starch	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	In addition, OsSRT1 was detected to directly bind to starch metabolism genes such as OsAmy3B, OsAmy3E, OsBmy4, and OsBmy9
OsSRT1	Os04g0271000	LOC_Os04g20270	development	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression
OsSRT1	Os04g0271000	LOC_Os04g20270	development	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	In this work, we investigated the role of OsSRT1 in rice seed development
OsSRT1	Os04g0271000	LOC_Os04g20270	development	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	Down-regulation of OsSRT1 induced higher expression of Rice Starch Regulator1 (RSR1) and amylases genes in developing seeds, which resulted in a decrease of starch synthesis and an increase of starch degradation, leading to abnormal seed development
OsSRT1	Os04g0271000	LOC_Os04g20270	homeostasis	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	OsSRT1 is a NAD+-dependent histone deacetylase, closely related to the human SIRT6 that plays key roles in genome stability and metabolic homeostasis
OsSRT1	Os04g0271000	LOC_Os04g20270	seed development	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression
OsSRT1	Os04g0271000	LOC_Os04g20270	seed development	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	In this work, we investigated the role of OsSRT1 in rice seed development
OsSRT1	Os04g0271000	LOC_Os04g20270	seed development	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression	Down-regulation of OsSRT1 induced higher expression of Rice Starch Regulator1 (RSR1) and amylases genes in developing seeds, which resulted in a decrease of starch synthesis and an increase of starch degradation, leading to abnormal seed development
OsSRT1	Os04g0271000	LOC_Os04g20270	oxidative stress	Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes.	We show that OsSRT1 reduces GAPDH lysine acetylation and nuclear accumulation that are enhanced by oxidative stress
OsSRT1	Os04g0271000	LOC_Os04g20270	oxidative	Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes.	We show that OsSRT1 reduces GAPDH lysine acetylation and nuclear accumulation that are enhanced by oxidative stress
OsSRT1	Os04g0271000	LOC_Os04g20270	stress	Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes.	We show that OsSRT1 reduces GAPDH lysine acetylation and nuclear accumulation that are enhanced by oxidative stress
OsSRT1	Os04g0271000	LOC_Os04g20270	transcriptional activator	Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes.	Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes.
OsSRT1	Os04g0271000	LOC_Os04g20270	transcriptional activator	Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes.	The results indicate that OsSRT1 represses glycolysis by both regulating epigenetic modification of histone and inhibiting the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes in rice
OsSSI|SSS1	Os06g0160700	LOC_Os06g06560	starch	Structure, organization, and chromosomal location of the gene encoding a form of rice soluble starch synthase	) genomic clone encoding the gene for a form of soluble starch synthase (SSS1) and its 5'- and 3'-flanking regions has been isolated and sequenced
OsSSI|SSS1	Os06g0160700	LOC_Os06g06560	starch	Structure, organization, and chromosomal location of the gene encoding a form of rice soluble starch synthase	The exon/intron organization of the SSS1 gene was divergent from that of the rice Waxy gene coding for granule-bound starch synthase, thus suggesting that the SSS1 and granule-bound starch synthase genes have evolved from an ancestral gene in a different way or that the two genes are products of different ancestral genes that have converged during evolution
OsSSI2	Os01g0919900	LOC_Os01g69080	blight	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Moreover, the OsSSI2-kd plants showed markedly enhanced resistance to the blast fungus Magnaporthe grisea and leaf-blight bacteria Xanthomonas oryzae pv
OsSSI2	Os01g0919900	LOC_Os01g69080	blight	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice
OsSSI2	Os01g0919900	LOC_Os01g69080	defense	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	These results suggest that OsSSI2 is involved in the negative regulation of defense responses in rice, as are its Arabidopsis and soybean counterparts
OsSSI2	Os01g0919900	LOC_Os01g69080	blast	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Moreover, the OsSSI2-kd plants showed markedly enhanced resistance to the blast fungus Magnaporthe grisea and leaf-blight bacteria Xanthomonas oryzae pv
OsSSI2	Os01g0919900	LOC_Os01g69080	blast	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice
OsSSI2	Os01g0919900	LOC_Os01g69080	leaf	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Moreover, the OsSSI2-kd plants showed markedly enhanced resistance to the blast fungus Magnaporthe grisea and leaf-blight bacteria Xanthomonas oryzae pv
OsSSI2	Os01g0919900	LOC_Os01g69080	leaf	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice
OsSSI2	Os01g0919900	LOC_Os01g69080	disease resistance	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	In this study, we present functional analyses of a rice homolog of SSI2 (OsSSI2) in disease resistance of rice plants
OsSSI2	Os01g0919900	LOC_Os01g69080	disease resistance	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Taken together, our results suggest that induction of SA-responsive genes, including WRKY45, is likely responsible for enhanced disease resistance in OsSSI2-kd rice plants
OsSSI2	Os01g0919900	LOC_Os01g69080	blight disease	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice
OsSSI2	Os01g0919900	LOC_Os01g69080	disease	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	In this study, we present functional analyses of a rice homolog of SSI2 (OsSSI2) in disease resistance of rice plants
OsSSI2	Os01g0919900	LOC_Os01g69080	disease	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Taken together, our results suggest that induction of SA-responsive genes, including WRKY45, is likely responsible for enhanced disease resistance in OsSSI2-kd rice plants
OsSSI2	Os01g0919900	LOC_Os01g69080	disease	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice
OsSSI2	Os01g0919900	LOC_Os01g69080	defense response	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice	These results suggest that OsSSI2 is involved in the negative regulation of defense responses in rice, as are its Arabidopsis and soybean counterparts
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Hence, the OsSSIIIa (Oryza sativa SSIIIa) mutations are referred to as white-core floury endosperm 5-1 (flo5-1) and flo5-2
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Based upon their X-ray diffraction patterns, the crystallinity of the starch in the flo5 mutant endosperm is decreased compared with wild type
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Through determination of the chain-length distribution of the mutant endosperm starch, we found that flo5-1 and flo5-2 mutants have reduced the content of long chains with degree of polymerization (DP) 30 or greater compared with the controls
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	This suggests that OsSSIIIa/Flo5 plays an important role in generating relatively long chains in rice endosperm
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	In addition, DP 6 to 8 and DP 16 to 20 appeared to be reduced in endosperm starch of flo5-1 and flo5-2, whereas DP 9 to 15 and DP 22 to 29 were increased in these mutants
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	We propose a distinct role for OsSSIIIa/Flo5 and the coordinated action of other SS isoforms during starch synthesis in the seed endosperm of rice
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Hence, the OsSSIIIa (Oryza sativa SSIIIa) mutations are referred to as white-core floury endosperm 5-1 (flo5-1) and flo5-2
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	This suggests that OsSSIIIa/Flo5 plays an important role in generating relatively long chains in rice endosperm
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	We propose a distinct role for OsSSIIIa/Flo5 and the coordinated action of other SS isoforms during starch synthesis in the seed endosperm of rice
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	endosperm	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	starch	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	We propose a distinct role for OsSSIIIa/Flo5 and the coordinated action of other SS isoforms during starch synthesis in the seed endosperm of rice
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	starch	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	seed	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	We propose a distinct role for OsSSIIIa/Flo5 and the coordinated action of other SS isoforms during starch synthesis in the seed endosperm of rice
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	starch	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Based upon their X-ray diffraction patterns, the crystallinity of the starch in the flo5 mutant endosperm is decreased compared with wild type
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	starch	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Through determination of the chain-length distribution of the mutant endosperm starch, we found that flo5-1 and flo5-2 mutants have reduced the content of long chains with degree of polymerization (DP) 30 or greater compared with the controls
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	starch	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	In addition, DP 6 to 8 and DP 16 to 20 appeared to be reduced in endosperm starch of flo5-1 and flo5-2, whereas DP 9 to 15 and DP 22 to 29 were increased in these mutants
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	starch	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	We propose a distinct role for OsSSIIIa/Flo5 and the coordinated action of other SS isoforms during starch synthesis in the seed endosperm of rice
OsSSIIIa|Flo5	Os08g0191433	LOC_Os08g09230	starch	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)
OsSSIIIb	Os04g0624600	LOC_Os04g53310	starch	Creating high-resistant starch rice by simultaneous editing of SS3a and SS3b	Creating high-resistant starch rice by simultaneous editing of SS3a and SS3b
OsSta2	Os02g0655200	LOC_Os02g43820	salt	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.
OsSta2	Os02g0655200	LOC_Os02g43820	salt	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Based on all of these results, we suggest that OsSta2 has important roles in determining yields as well as in conferring tolerance to salt stresses
OsSta2	Os02g0655200	LOC_Os02g43820	tolerance	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.
OsSta2	Os02g0655200	LOC_Os02g43820	tolerance	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Based on all of these results, we suggest that OsSta2 has important roles in determining yields as well as in conferring tolerance to salt stresses
OsSta2	Os02g0655200	LOC_Os02g43820	salt stress	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.
OsSta2	Os02g0655200	LOC_Os02g43820	salt stress	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Based on all of these results, we suggest that OsSta2 has important roles in determining yields as well as in conferring tolerance to salt stresses
OsSta2	Os02g0655200	LOC_Os02g43820	stress	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.
OsSta2	Os02g0655200	LOC_Os02g43820	stress	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	To confirm its role in stress tolerance, we generated transgenic rice that over-expresses OsSta2 under a maize ubiquitin promoter
OsSta2	Os02g0655200	LOC_Os02g43820	Ubiquitin	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	To confirm its role in stress tolerance, we generated transgenic rice that over-expresses OsSta2 under a maize ubiquitin promoter
OsSta2	Os02g0655200	LOC_Os02g43820	stress tolerance	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.
OsSta2	Os02g0655200	LOC_Os02g43820	stress tolerance	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	To confirm its role in stress tolerance, we generated transgenic rice that over-expresses OsSta2 under a maize ubiquitin promoter
OsSTK1	Os01g0832900	LOC_Os01g61620	Kinase	Rice serine/threonine kinase 1 is required for the stimulation of OsNug2 GTPase activity.	A kinase assay showed that OsSTK1 had weak autophosphorylation activity and strongly phosphorylated serine 209 of OsNug2
OsSTL2	Os08g0413000	LOC_Os08g31870	salt	Genetic basis and identification of candidate genes for salt tolerance in rice by GWAS.	Twenty-one QTLs were identified and two candidate genes named OsSTL1 (Oryza sativa salt tolerance level 1) and OsSTL2 (Oryza sativa salt tolerance level 2) were confirmed using sequence analysis
OsSTL2	Os08g0413000	LOC_Os08g31870	tolerance	Genetic basis and identification of candidate genes for salt tolerance in rice by GWAS.	Twenty-one QTLs were identified and two candidate genes named OsSTL1 (Oryza sativa salt tolerance level 1) and OsSTL2 (Oryza sativa salt tolerance level 2) were confirmed using sequence analysis
OsSTL2	Os08g0413000	LOC_Os08g31870	salt tolerance	Genetic basis and identification of candidate genes for salt tolerance in rice by GWAS.	Twenty-one QTLs were identified and two candidate genes named OsSTL1 (Oryza sativa salt tolerance level 1) and OsSTL2 (Oryza sativa salt tolerance level 2) were confirmed using sequence analysis
OsSTLK	Os05g0305900	LOC_Os05g24010	root	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Transcript analysis showed that OsSTLK was significantly induced in response to salt stress in rice shoot and root in a time and dosage-dependent fashion
OsSTLK	Os05g0305900	LOC_Os05g24010	shoot	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Transcript analysis showed that OsSTLK was significantly induced in response to salt stress in rice shoot and root in a time and dosage-dependent fashion
OsSTLK	Os05g0305900	LOC_Os05g24010	salt	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Here, we identified a novel rice LRR-RLK member involved in salt tolerance and designated as OsSTLK (Oryza sativa L
OsSTLK	Os05g0305900	LOC_Os05g24010	salt	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Transcript analysis showed that OsSTLK was significantly induced in response to salt stress in rice shoot and root in a time and dosage-dependent fashion
OsSTLK	Os05g0305900	LOC_Os05g24010	salt	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Phenotypic observations indicated that OsSTLK overexpression exhibited reduced salt sensitivity, and improved salt stress tolerance
OsSTLK	Os05g0305900	LOC_Os05g24010	salt	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Further physiological analysis showed that OsSTLK overexpression remarkably reduced electrolyte leakage, malondialdehyde (MDA) content, reactive oxygen species (ROS) accumulation under salt stress conditions by up-regulating ROS-scavenging activities and modifying stomatal patterning
OsSTLK	Os05g0305900	LOC_Os05g24010	salt	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Taken together, our findings suggested that OsSTLK as an important positive regulator of salt stress tolerance perhaps through regulating ROS scavenging system, Na+/K+ ratio and MAPK signal pathway
OsSTLK	Os05g0305900	LOC_Os05g24010	tolerance	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Here, we identified a novel rice LRR-RLK member involved in salt tolerance and designated as OsSTLK (Oryza sativa L
OsSTLK	Os05g0305900	LOC_Os05g24010	tolerance	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Phenotypic observations indicated that OsSTLK overexpression exhibited reduced salt sensitivity, and improved salt stress tolerance
OsSTLK	Os05g0305900	LOC_Os05g24010	tolerance	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Taken together, our findings suggested that OsSTLK as an important positive regulator of salt stress tolerance perhaps through regulating ROS scavenging system, Na+/K+ ratio and MAPK signal pathway
OsSTLK	Os05g0305900	LOC_Os05g24010	salt tolerance	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Here, we identified a novel rice LRR-RLK member involved in salt tolerance and designated as OsSTLK (Oryza sativa L
OsSTLK	Os05g0305900	LOC_Os05g24010	salt stress	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Transcript analysis showed that OsSTLK was significantly induced in response to salt stress in rice shoot and root in a time and dosage-dependent fashion
OsSTLK	Os05g0305900	LOC_Os05g24010	salt stress	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Phenotypic observations indicated that OsSTLK overexpression exhibited reduced salt sensitivity, and improved salt stress tolerance
OsSTLK	Os05g0305900	LOC_Os05g24010	salt stress	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Further physiological analysis showed that OsSTLK overexpression remarkably reduced electrolyte leakage, malondialdehyde (MDA) content, reactive oxygen species (ROS) accumulation under salt stress conditions by up-regulating ROS-scavenging activities and modifying stomatal patterning
OsSTLK	Os05g0305900	LOC_Os05g24010	salt stress	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Taken together, our findings suggested that OsSTLK as an important positive regulator of salt stress tolerance perhaps through regulating ROS scavenging system, Na+/K+ ratio and MAPK signal pathway
OsSTLK	Os05g0305900	LOC_Os05g24010	stress	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Transcript analysis showed that OsSTLK was significantly induced in response to salt stress in rice shoot and root in a time and dosage-dependent fashion
OsSTLK	Os05g0305900	LOC_Os05g24010	stress	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Phenotypic observations indicated that OsSTLK overexpression exhibited reduced salt sensitivity, and improved salt stress tolerance
OsSTLK	Os05g0305900	LOC_Os05g24010	stress	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Further physiological analysis showed that OsSTLK overexpression remarkably reduced electrolyte leakage, malondialdehyde (MDA) content, reactive oxygen species (ROS) accumulation under salt stress conditions by up-regulating ROS-scavenging activities and modifying stomatal patterning
OsSTLK	Os05g0305900	LOC_Os05g24010	stress	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Taken together, our findings suggested that OsSTLK as an important positive regulator of salt stress tolerance perhaps through regulating ROS scavenging system, Na+/K+ ratio and MAPK signal pathway
OsSTLK	Os05g0305900	LOC_Os05g24010	stomatal	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Further physiological analysis showed that OsSTLK overexpression remarkably reduced electrolyte leakage, malondialdehyde (MDA) content, reactive oxygen species (ROS) accumulation under salt stress conditions by up-regulating ROS-scavenging activities and modifying stomatal patterning
OsSTLK	Os05g0305900	LOC_Os05g24010	reactive oxygen species	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Further physiological analysis showed that OsSTLK overexpression remarkably reduced electrolyte leakage, malondialdehyde (MDA) content, reactive oxygen species (ROS) accumulation under salt stress conditions by up-regulating ROS-scavenging activities and modifying stomatal patterning
OsSTLK	Os05g0305900	LOC_Os05g24010	stress tolerance	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Phenotypic observations indicated that OsSTLK overexpression exhibited reduced salt sensitivity, and improved salt stress tolerance
OsSTLK	Os05g0305900	LOC_Os05g24010	stress tolerance	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Taken together, our findings suggested that OsSTLK as an important positive regulator of salt stress tolerance perhaps through regulating ROS scavenging system, Na+/K+ ratio and MAPK signal pathway
OsSTLK	Os05g0305900	LOC_Os05g24010	Salt Sensitivity	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice	Phenotypic observations indicated that OsSTLK overexpression exhibited reduced salt sensitivity, and improved salt stress tolerance
OsSTRL2	Os03g0263600	LOC_Os03g15710	pollen	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	OsSTRL2 knockout mutant resulted to male sterility because of the defects in anther development and pollen wall formation
OsSTRL2	Os03g0263600	LOC_Os03g15710	pollen	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	Therefore, OsSTRL2 is an atypical strictosidine synthase that plays crucial roles in regulating anther development and pollen wall formation in rice
OsSTRL2	Os03g0263600	LOC_Os03g15710	anther	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	OsSTRL2 knockout mutant resulted to male sterility because of the defects in anther development and pollen wall formation
OsSTRL2	Os03g0263600	LOC_Os03g15710	anther	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	Therefore, OsSTRL2 is an atypical strictosidine synthase that plays crucial roles in regulating anther development and pollen wall formation in rice
OsSTRL2	Os03g0263600	LOC_Os03g15710	sterility	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	OsSTRL2 knockout mutant resulted to male sterility because of the defects in anther development and pollen wall formation
OsSTRL2	Os03g0263600	LOC_Os03g15710	development	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	OsSTRL2 knockout mutant resulted to male sterility because of the defects in anther development and pollen wall formation
OsSTRL2	Os03g0263600	LOC_Os03g15710	development	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	Therefore, OsSTRL2 is an atypical strictosidine synthase that plays crucial roles in regulating anther development and pollen wall formation in rice
OsSTRL2	Os03g0263600	LOC_Os03g15710	tapetal	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	Tissue-specific expression profile analysis, β-glucuronidase histochemical (GUS) staining and RNA in situ hybridization confirmed that OsSTRL2 was highly expressed in tapetal cells and microspores
OsSTRL2	Os03g0263600	LOC_Os03g15710	anther development	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	OsSTRL2 knockout mutant resulted to male sterility because of the defects in anther development and pollen wall formation
OsSTRL2	Os03g0263600	LOC_Os03g15710	anther development	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	Therefore, OsSTRL2 is an atypical strictosidine synthase that plays crucial roles in regulating anther development and pollen wall formation in rice
OsSTRL2	Os03g0263600	LOC_Os03g15710	pollen wall	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	OsSTRL2 knockout mutant resulted to male sterility because of the defects in anther development and pollen wall formation
OsSTRL2	Os03g0263600	LOC_Os03g15710	pollen wall	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	Therefore, OsSTRL2 is an atypical strictosidine synthase that plays crucial roles in regulating anther development and pollen wall formation in rice
OsSTRL2	Os03g0263600	LOC_Os03g15710	male sterility	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	OsSTRL2 knockout mutant resulted to male sterility because of the defects in anther development and pollen wall formation
OsSub42|OsSP2	Os04g0543700	LOC_Os04g45960	panicle	Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice	We validated the stage-specificity of regulatory regions of three panicle-specific genes, OsAGO3, OsSub42, and RTS, and an early seed-specific gene, XYH, in transgenic rice
OsSub42|OsSP2	Os04g0543700	LOC_Os04g45960	seed	Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice	We validated the stage-specificity of regulatory regions of three panicle-specific genes, OsAGO3, OsSub42, and RTS, and an early seed-specific gene, XYH, in transgenic rice
OsSUBSrP1	Os04g0483400	LOC_Os04g40720	spikelet	A putative SUBTILISIN-LIKE SERINE PROTEASE 1 (SUBSrP1) regulates anther cuticle biosynthesis and panicle development in rice.	 CRISPR-mediated knock-out lines of OsSUBSrP1 displayed spikelet abortion comparable to apa1331
OsSUBSrP1	Os04g0483400	LOC_Os04g40720	panicle	A putative SUBTILISIN-LIKE SERINE PROTEASE 1 (SUBSrP1) regulates anther cuticle biosynthesis and panicle development in rice.	 Phenotypic defects were only seen in apical spikelets due to highest expression of OsSUBSrP1 in upper panicle portion
OsSUI1|OsPSS	Os01g0118300	LOC_Os01g02890	cell wall	Phosphatidylserine Synthase Controls Cell Elongation Especially in the Uppermost Internode in Rice by Regulation of Exocytosis	These results together suggest that OsPSS-1 plays a potential role in mediating cell expansion by regulating secretion of cell wall components.
OsSUI1|OsPSS	Os01g0118300	LOC_Os01g02890	cell elongation	Phosphatidylserine Synthase Controls Cell Elongation Especially in the Uppermost Internode in Rice by Regulation of Exocytosis	These results collectively suggested that OsPSS-1 expression is necessary for cell elongation in various tissues.
OsSULTR3;3	Os04g0652400	LOC_Os04g55800	vascular bundle	Disruption of OsSULTR3;3 reduces phytate and phosphorus concentrations and alters the metabolite profile in rice grains.	The promoter of OsSULTR3;3 is highly active in the vascular bundles of leaves, stems and seeds, and its protein is localized in the endoplasmic reticulum
OsSULTR3;3	Os04g0652400	LOC_Os04g55800	grain	Disruption of OsSULTR3;3 reduces phytate and phosphorus concentrations and alters the metabolite profile in rice grains.	The findings reveal that OsSULTR3;3 plays an important role in grain metabolism, pointing to a new route to generate value-added grains in rice and other cereal crops
OsSULTR3;3	Os04g0652400	LOC_Os04g55800	map-based cloning	Disruption of OsSULTR3;3 reduces phytate and phosphorus concentrations and alters the metabolite profile in rice grains.	Map-based cloning and complementation identified the underlying lpa gene to be OsSULTR3;3
OsSULTR3;3	Os04g0652400	LOC_Os04g55800	phosphorus	Disruption of OsSULTR3;3 reduces phytate and phosphorus concentrations and alters the metabolite profile in rice grains.	Disruption of OsSULTR3;3 reduces phytate and phosphorus concentrations and alters the metabolite profile in rice grains.
OsSUN1	Os05g0270200	LOC_Os05g18770	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis
OsSUN1	Os05g0270200	LOC_Os05g18770	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	The Ossun1 Ossun2 double mutant showed severe defects in telomere clustering, homologous pairing and crossover formation, suggesting that OsSUN1 and OsSUN2 are essential for rice meiosis
OsSUN1	Os05g0270200	LOC_Os05g18770	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	Importantly, the Ossun1 single mutant had a normal phenotype but meiosis was disrupted in the Ossun2 mutant, indicating that OsSUN1 and OsSUN2 are not completely redundant in rice
OsSUN1	Os05g0270200	LOC_Os05g18770	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	These results suggested that OsSUN2 plays a more critical role than OsSUN1 in rice meiosis
OsSUN1	Os05g0270200	LOC_Os05g18770	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	Taken together, this work reveals the essential but partially redundant roles of OsSUN1 and OsSUN2 in rice meiosis and demonstrates that functional divergence of SUN proteins has taken place during evolution
OsSUN1	Os05g0270200	LOC_Os05g18770	crossover	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	The Ossun1 Ossun2 double mutant showed severe defects in telomere clustering, homologous pairing and crossover formation, suggesting that OsSUN1 and OsSUN2 are essential for rice meiosis
OsSUN1	Os05g0270200	LOC_Os05g18770	crossover	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	When introducing a mutant allele of OsSPORULATION11 (OsSPO11)-1, which encodes a topoisomerase initiating homologous recombination, into the Ossun1 Ossun2 mutant, we observed a combined Osspo11-1- and Ossun1 Ossun2-like phenotype, demonstrating that OsSUN1 and OsSUN2 promote bouquet formation independent of OsSPO11-1, but regulate pairing and crossover formation downstream of OsSPO11-1
OsSUN1	Os05g0270200	LOC_Os05g18770	homologous recombination	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	When introducing a mutant allele of OsSPORULATION11 (OsSPO11)-1, which encodes a topoisomerase initiating homologous recombination, into the Ossun1 Ossun2 mutant, we observed a combined Osspo11-1- and Ossun1 Ossun2-like phenotype, demonstrating that OsSUN1 and OsSUN2 promote bouquet formation independent of OsSPO11-1, but regulate pairing and crossover formation downstream of OsSPO11-1
OsSUN2	Os01g0267600	LOC_Os01g16220	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis
OsSUN2	Os01g0267600	LOC_Os01g16220	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	The Ossun1 Ossun2 double mutant showed severe defects in telomere clustering, homologous pairing and crossover formation, suggesting that OsSUN1 and OsSUN2 are essential for rice meiosis
OsSUN2	Os01g0267600	LOC_Os01g16220	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	Importantly, the Ossun1 single mutant had a normal phenotype but meiosis was disrupted in the Ossun2 mutant, indicating that OsSUN1 and OsSUN2 are not completely redundant in rice
OsSUN2	Os01g0267600	LOC_Os01g16220	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	These results suggested that OsSUN2 plays a more critical role than OsSUN1 in rice meiosis
OsSUN2	Os01g0267600	LOC_Os01g16220	meiosis	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	Taken together, this work reveals the essential but partially redundant roles of OsSUN1 and OsSUN2 in rice meiosis and demonstrates that functional divergence of SUN proteins has taken place during evolution
OsSUN2	Os01g0267600	LOC_Os01g16220	crossover	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	The Ossun1 Ossun2 double mutant showed severe defects in telomere clustering, homologous pairing and crossover formation, suggesting that OsSUN1 and OsSUN2 are essential for rice meiosis
OsSUN2	Os01g0267600	LOC_Os01g16220	crossover	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	When introducing a mutant allele of OsSPORULATION11 (OsSPO11)-1, which encodes a topoisomerase initiating homologous recombination, into the Ossun1 Ossun2 mutant, we observed a combined Osspo11-1- and Ossun1 Ossun2-like phenotype, demonstrating that OsSUN1 and OsSUN2 promote bouquet formation independent of OsSPO11-1, but regulate pairing and crossover formation downstream of OsSPO11-1
OsSUN2	Os01g0267600	LOC_Os01g16220	homologous recombination	The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis	When introducing a mutant allele of OsSPORULATION11 (OsSPO11)-1, which encodes a topoisomerase initiating homologous recombination, into the Ossun1 Ossun2 mutant, we observed a combined Osspo11-1- and Ossun1 Ossun2-like phenotype, demonstrating that OsSUN1 and OsSUN2 promote bouquet formation independent of OsSPO11-1, but regulate pairing and crossover formation downstream of OsSPO11-1
OsSUS4	Os03g0340500	LOC_Os03g22120	sucrose synthase	Identification and Characterization of the Duplicate Rice Sucrose Synthase Genes OsSUS5 and OsSUS7 Which Are Associated with the Plasma Membrane	Identification and Characterization of the Duplicate Rice Sucrose Synthase Genes OsSUS5 and OsSUS7 Which Are Associated with the Plasma Membrane
OsSUS5	Os04g0309600	LOC_Os04g24430	root	Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane	RT-PCR analysis and transient expression assays revealed that OsSUS5 and OsSUS7 exhibit similar expression patterns in rice tissues, with the highest expression evident in roots
OsSUS7	Os04g0249500	LOC_Os04g17650	root	Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane	RT-PCR analysis and transient expression assays revealed that OsSUS5 and OsSUS7 exhibit similar expression patterns in rice tissues, with the highest expression evident in roots
OsSUT1	Os03g0170900	LOC_Os03g07480	leaf	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	OsSUT1 encodes a rice sucrose transport protein that is highly expressed in developing grain, leaf sheath and stem after heading, and in germinating seedlings, but only at very low levels in source leaves
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	However, starch accumulation during pollen development was not affected by disruption of OsSUT1, suggesting that the sugar(s) required for starch biosynthesis is supplied by other sugar transporters
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected
OsSUT1	Os03g0170900	LOC_Os03g07480	leaf	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	Wide-field fluorescence microscopy was used to confirm the expression of OsSUT1-promoter::GUS reporter gene in vascular parenchyma associated with xylem elements, as well as in companion cells associated with phloem sieve tubes of large, intermediate and small vascular bundles within the leaf blade, in regions where the aphids had settled and were feeding
OsSUT1	Os03g0170900	LOC_Os03g07480	leaf	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	The roles of the rice sucrose transporter, OsSUT1, have previously been examined in filling grain, germination, and early seedling growth
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	Using expression analysis, the role of the sucrose transporter OsSUT1 during germination and early growth of rice seedlings has been examined in detail, over a time-course ranging from 1 d to 7 d post-imbibition
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants
OsSUT1	Os03g0170900	LOC_Os03g07480	leaf	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	OsSUT1 was also present in the coleoptile and the first and second leaf blades, where it was localized to the phloem along the entire length of these tissues, and was also present within the phloem of the primary roots
OsSUT1	Os03g0170900	LOC_Os03g07480	primary root	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	OsSUT1 was also present in the coleoptile and the first and second leaf blades, where it was localized to the phloem along the entire length of these tissues, and was also present within the phloem of the primary roots
OsSUT1	Os03g0170900	LOC_Os03g07480	starch	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	Furthermore, seed from some of the T0 population showed a reduction in the rate of germination and growth, supporting the hypothesis that OsSUT1 may also play a role in transporting sucrose remobilized from starch reserves in germinating seeds
OsSUT1	Os03g0170900	LOC_Os03g07480	stem	Assimilate translocation and expression of sucrose transporter, OsSUT1, contribute to high-performance ripening under heat stress in the heat-tolerant rice cultivar Genkitsukushi	From 14 to 21 days after heading, the expression of the sucrose transporter gene, OsSUT1, was higher in the stem of 'Genkitsukushi' grown under high temperature than in 'Tsukushiroman'
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Assimilate translocation and expression of sucrose transporter, OsSUT1, contribute to high-performance ripening under heat stress in the heat-tolerant rice cultivar Genkitsukushi	In addition, the expression of OsSUT1 in the grains of 'Genkitsukushi' was significantly higher than in 'Tsukushiroman' during the ripening period
OsSUT1	Os03g0170900	LOC_Os03g07480	root	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	However, by 3 d post-imbibition, OsSUT1 was present in the companion cells and sieve elements of the scutellar vascular bundle, where it may play a role in phloem loading of sucrose for transport to the developing shoot and roots
OsSUT1	Os03g0170900	LOC_Os03g07480	root	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	OsSUT1 was also present in the coleoptile and the first and second leaf blades, where it was localized to the phloem along the entire length of these tissues, and was also present within the phloem of the primary roots
OsSUT1	Os03g0170900	LOC_Os03g07480	growth	Antisense Expression of a Rice Sucrose Transporter OsSUT1 in Rice (Oryza sativa L.)	There was no difference between antisense and wild-type plants in carbohydrate content and photosynthetic ability of the flag leaves in the vegetative growth stage, suggesting that OsSUT1 may not play an important role in carbon metabolism, at least in these materials
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Functionally important amino acids in rice sucrose transporter OsSUT1	Six conserved, charged amino acids within membrane spans in rice sucrose transporter OsSUT1 were identified using a three-dimensional structural model based on the crystal structures of three major facilitator superfamily (MFS) proteins: LacY, GlpT, and EmrD
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Functionally important amino acids in rice sucrose transporter OsSUT1	Functionally important amino acids in rice sucrose transporter OsSUT1
OsSUT1	Os03g0170900	LOC_Os03g07480	starch biosynthesis	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	However, starch accumulation during pollen development was not affected by disruption of OsSUT1, suggesting that the sugar(s) required for starch biosynthesis is supplied by other sugar transporters
OsSUT1	Os03g0170900	LOC_Os03g07480	grain filling	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	The roles of the rice sucrose transporter, OsSUT1, have previously been examined in filling grain, germination, and early seedling growth
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	In the current work, the role that OsSUT1 plays in the transport of assimilate along the entire long-distance pathway, from the flag leaf blade to the base of the filling grain, was investigated
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	OsSUT1 promoter::GUS (beta-glucuronidase) reporter gene analysis and immunolocalization revealed that both OsSUT1 promoter::GUS activity and OsSUT protein were present in the mature phloem of all the vegetative tissues involved in the long-distance assimilate transport pathway during grain filling
OsSUT1	Os03g0170900	LOC_Os03g07480	growth	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	Using expression analysis, the role of the sucrose transporter OsSUT1 during germination and early growth of rice seedlings has been examined in detail, over a time-course ranging from 1 d to 7 d post-imbibition
OsSUT1	Os03g0170900	LOC_Os03g07480	growth	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Sugar transporters involved in flowering and grain development of rice	The rice sucrose transporterOsSUT1 and the monosaccharide transportersOsMST1-3 have been previously characterized
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Sugar transporters involved in flowering and grain development of rice	4 percnt; identity to that ofOsSUT1and barley transporterHvSUT1, respectively
OsSUT1	Os03g0170900	LOC_Os03g07480	vegetative	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	OsSUT1 promoter::GUS (beta-glucuronidase) reporter gene analysis and immunolocalization revealed that both OsSUT1 promoter::GUS activity and OsSUT protein were present in the mature phloem of all the vegetative tissues involved in the long-distance assimilate transport pathway during grain filling
OsSUT1	Os03g0170900	LOC_Os03g07480	growth	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	The roles of the rice sucrose transporter, OsSUT1, have previously been examined in filling grain, germination, and early seedling growth
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Antisense Expression of a Rice Sucrose Transporter OsSUT1 in Rice (Oryza sativa L.)	We analyzed the function of a rice sucrose transporter, OsSUT1, by using antisense rice
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Antisense Expression of a Rice Sucrose Transporter OsSUT1 in Rice (Oryza sativa L.)	Antisense Expression of a Rice Sucrose Transporter OsSUT1 in Rice (Oryza sativa L.)
OsSUT1	Os03g0170900	LOC_Os03g07480	sheath	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	OsSUT1 encodes a rice sucrose transport protein that is highly expressed in developing grain, leaf sheath and stem after heading, and in germinating seedlings, but only at very low levels in source leaves
OsSUT1	Os03g0170900	LOC_Os03g07480	vascular bundle	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	However, by 3 d post-imbibition, OsSUT1 was present in the companion cells and sieve elements of the scutellar vascular bundle, where it may play a role in phloem loading of sucrose for transport to the developing shoot and roots
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Transport activity of rice sucrose transporters OsSUT1 and OsSUT5	Transport activity of rice sucrose transporters OsSUT1 and OsSUT5
OsSUT1	Os03g0170900	LOC_Os03g07480	endosperm	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	Unlike the wheat orthologue, TaSUT1, which is thought to be directly involved in sugar transfer across the scutellar epithelium, OsSUT1 is not expressed in the scutellar epithelial cell layer of germinating rice and is, therefore, not involved in transport of sugars across the symplastic discontinuity between the endosperm and the embryo
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Arg188 in rice sucrose transporter OsSUT1 is crucial for substrate transport	Arg188 in rice sucrose transporter OsSUT1 is crucial for substrate transport
OsSUT1	Os03g0170900	LOC_Os03g07480	vegetative	Antisense Expression of a Rice Sucrose Transporter OsSUT1 in Rice (Oryza sativa L.)	There was no difference between antisense and wild-type plants in carbohydrate content and photosynthetic ability of the flag leaves in the vegetative growth stage, suggesting that OsSUT1 may not play an important role in carbon metabolism, at least in these materials
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Assimilate translocation and expression of sucrose transporter, OsSUT1, contribute to high-performance ripening under heat stress in the heat-tolerant rice cultivar Genkitsukushi	From 14 to 21 days after heading, the expression of the sucrose transporter gene, OsSUT1, was higher in the stem of 'Genkitsukushi' grown under high temperature than in 'Tsukushiroman'
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Assimilate translocation and expression of sucrose transporter, OsSUT1, contribute to high-performance ripening under heat stress in the heat-tolerant rice cultivar Genkitsukushi	Assimilate translocation and expression of sucrose transporter, OsSUT1, contribute to high-performance ripening under heat stress in the heat-tolerant rice cultivar Genkitsukushi
OsSUT1	Os03g0170900	LOC_Os03g07480	pollen	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	Expression of OsSUT1 in pollen was confirmed by a promoter-GUS fusion assay
OsSUT1	Os03g0170900	LOC_Os03g07480	pollen	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	The physiological function of OsSUT1 in pollen was further investigated using retrotransposon insertion mutant lines
OsSUT1	Os03g0170900	LOC_Os03g07480	pollen	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	Their progeny segregated into SUT1+/- and SUT1+/+ with the ratio of 1:1, suggesting that the pollen disrupted for OsSUT1 is dysfunctional
OsSUT1	Os03g0170900	LOC_Os03g07480	pollen	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	However, starch accumulation during pollen development was not affected by disruption of OsSUT1, suggesting that the sugar(s) required for starch biosynthesis is supplied by other sugar transporters
OsSUT1	Os03g0170900	LOC_Os03g07480	pollen	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected
OsSUT1	Os03g0170900	LOC_Os03g07480	growth	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	Furthermore, seed from some of the T0 population showed a reduction in the rate of germination and growth, supporting the hypothesis that OsSUT1 may also play a role in transporting sucrose remobilized from starch reserves in germinating seeds
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	The role of the sucrose transporter OsSUT1 in assimilate retrieval via the xylem, as a result of damage to and leakage from punctured phloem was examined after rusty plum aphid (Hysteroneura setariae, Thomas) infestation on leaves from 3-week-old rice (Oryza sativa L
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles
OsSUT1	Os03g0170900	LOC_Os03g07480	seedling	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	OsSUT1 encodes a rice sucrose transport protein that is highly expressed in developing grain, leaf sheath and stem after heading, and in germinating seedlings, but only at very low levels in source leaves
OsSUT1	Os03g0170900	LOC_Os03g07480	salt	Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309	This hypothesis was tested using antisense lines of the salt responsive OsSUT1 gene in the salt sensitive Taipei 309 cultivar
OsSUT1	Os03g0170900	LOC_Os03g07480	salt	Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309	Two independent OsSUT1 lines with an antisense inhibition similar to the naturally occurring salt induced reduction of OsSUT1 gene expression showed these phenomena but not a more extreme antisense inhibition line
OsSUT1	Os03g0170900	LOC_Os03g07480	salt	Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309	Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309
OsSUT1	Os03g0170900	LOC_Os03g07480	stem	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	OsSUT1 encodes a rice sucrose transport protein that is highly expressed in developing grain, leaf sheath and stem after heading, and in germinating seedlings, but only at very low levels in source leaves
OsSUT1	Os03g0170900	LOC_Os03g07480	grain filling	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	OsSUT1 promoter::GUS (beta-glucuronidase) reporter gene analysis and immunolocalization revealed that both OsSUT1 promoter::GUS activity and OsSUT protein were present in the mature phloem of all the vegetative tissues involved in the long-distance assimilate transport pathway during grain filling
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Sugar transporters involved in flowering and grain development of rice	On the other handOsSUT1 was expressed at the early stage of the grain development, suggesting a different physiological role compared to Os SUT2
OsSUT1	Os03g0170900	LOC_Os03g07480	grain filling	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	While the homozygote of disrupted OsSUT1 (SUT1-/-) could not be obtained, heterozygote plants (SUT1+/-) showed normal grain filling
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	While the homozygote of disrupted OsSUT1 (SUT1-/-) could not be obtained, heterozygote plants (SUT1+/-) showed normal grain filling
OsSUT1	Os03g0170900	LOC_Os03g07480	starch	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected	However, starch accumulation during pollen development was not affected by disruption of OsSUT1, suggesting that the sugar(s) required for starch biosynthesis is supplied by other sugar transporters
OsSUT1	Os03g0170900	LOC_Os03g07480	seedling	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	Using expression analysis, the role of the sucrose transporter OsSUT1 during germination and early growth of rice seedlings has been examined in detail, over a time-course ranging from 1 d to 7 d post-imbibition
OsSUT1	Os03g0170900	LOC_Os03g07480	seedling	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	OsSUT1 encodes a rice sucrose transport protein that is highly expressed in developing grain, leaf sheath and stem after heading, and in germinating seedlings, but only at very low levels in source leaves
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	Severe phenotypes correlated with a reduction in OsSUT1 transcript level in filling grain
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis
OsSUT1	Os03g0170900	LOC_Os03g07480	transporter	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis
OsSUT1	Os03g0170900	LOC_Os03g07480	leaf	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	In the current work, the role that OsSUT1 plays in the transport of assimilate along the entire long-distance pathway, from the flag leaf blade to the base of the filling grain, was investigated
OsSUT1	Os03g0170900	LOC_Os03g07480	vascular bundle	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	Wide-field fluorescence microscopy was used to confirm the expression of OsSUT1-promoter::GUS reporter gene in vascular parenchyma associated with xylem elements, as well as in companion cells associated with phloem sieve tubes of large, intermediate and small vascular bundles within the leaf blade, in regions where the aphids had settled and were feeding
OsSUT1	Os03g0170900	LOC_Os03g07480	vascular bundle	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	Of great interest was up-regulation of OsSUT1 expression associated with the xylem parenchyma cells, abutting the metaxylem vessels, which confirmed that OsSUT1 was not only involved in loading of sugars into the phloem under normal physiological conditions, but was apparently involved in the retrieval of sucrose leaked into the xylem conduits, which occurred as a direct result of aphid feeding, probing and puncturing of vascular bundles
OsSUT1	Os03g0170900	LOC_Os03g07480	vascular bundle	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles
OsSUT1	Os03g0170900	LOC_Os03g07480	seedling	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for assimilate transport in rice	The roles of the rice sucrose transporter, OsSUT1, have previously been examined in filling grain, germination, and early seedling growth
OsSUT1	Os03g0170900	LOC_Os03g07480	photosynthesis	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis
OsSUT1	Os03g0170900	LOC_Os03g07480	temperature	Assimilate translocation and expression of sucrose transporter, OsSUT1, contribute to high-performance ripening under heat stress in the heat-tolerant rice cultivar Genkitsukushi	From 14 to 21 days after heading, the expression of the sucrose transporter gene, OsSUT1, was higher in the stem of 'Genkitsukushi' grown under high temperature than in 'Tsukushiroman'
OsSUT1	Os03g0170900	LOC_Os03g07480	seed	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	OsSUT1 encodes a rice sucrose transport protein that is highly expressed in developing grain, leaf sheath and stem after heading, and in germinating seedlings, but only at very low levels in source leaves
OsSUT1	Os03g0170900	LOC_Os03g07480	seed	Antisense suppression of the rice transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis	Furthermore, seed from some of the T0 population showed a reduction in the rate of germination and growth, supporting the hypothesis that OsSUT1 may also play a role in transporting sucrose remobilized from starch reserves in germinating seeds
OsSUT1	Os03g0170900	LOC_Os03g07480	xylem	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	The role of the sucrose transporter OsSUT1 in assimilate retrieval via the xylem, as a result of damage to and leakage from punctured phloem was examined after rusty plum aphid (Hysteroneura setariae, Thomas) infestation on leaves from 3-week-old rice (Oryza sativa L
OsSUT1	Os03g0170900	LOC_Os03g07480	xylem	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	Wide-field fluorescence microscopy was used to confirm the expression of OsSUT1-promoter::GUS reporter gene in vascular parenchyma associated with xylem elements, as well as in companion cells associated with phloem sieve tubes of large, intermediate and small vascular bundles within the leaf blade, in regions where the aphids had settled and were feeding
OsSUT1	Os03g0170900	LOC_Os03g07480	xylem	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	Of great interest was up-regulation of OsSUT1 expression associated with the xylem parenchyma cells, abutting the metaxylem vessels, which confirmed that OsSUT1 was not only involved in loading of sugars into the phloem under normal physiological conditions, but was apparently involved in the retrieval of sucrose leaked into the xylem conduits, which occurred as a direct result of aphid feeding, probing and puncturing of vascular bundles
OsSUT1	Os03g0170900	LOC_Os03g07480	xylem	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	The up-regulation of OsSUT1 in xylem vascular parenchyma thus provides evidence in support of the location within the xylem parenchyma cells of an efficient mechanism to ensure sucrose recovery after loss to the apoplast (xylem) after aphid-related feeding damage and its transfer back to the symplast (phloem) in O
OsSUT1	Os03g0170900	LOC_Os03g07480	xylem	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles
OsSUT1	Os03g0170900	LOC_Os03g07480	shoot	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants	However, by 3 d post-imbibition, OsSUT1 was present in the companion cells and sieve elements of the scutellar vascular bundle, where it may play a role in phloem loading of sucrose for transport to the developing shoot and roots
OsSUT1	Os03g0170900	LOC_Os03g07480	leaf	Phloem loading in rice leaves depends strongly on the apoplastic pathway	 Moreover, the expression level of OsSUT1 was much higher than that of other plasma membrane localized OsSUTs in the source leaf
OsSUT1	Os03g0170900	LOC_Os03g07480	grain	Phloem loading in rice leaves depends strongly on the apoplastic pathway	 The ossut1 and ossut4 mutants presented a decrease of grain yield, implying important roles of OsSUTs in phloem loading
OsSUT1	Os03g0170900	LOC_Os03g07480	grain yield	Phloem loading in rice leaves depends strongly on the apoplastic pathway	 The ossut1 and ossut4 mutants presented a decrease of grain yield, implying important roles of OsSUTs in phloem loading
OsSUT1	Os03g0170900	LOC_Os03g07480	phloem	Phloem loading in rice leaves depends strongly on the apoplastic pathway	 Cross sections of the GUS transgenic plant showed that the signals of OsSUT1 and OsSUT5 occurred in the phloem companion cells
OsSUT1	Os03g0170900	LOC_Os03g07480	phloem	Phloem loading in rice leaves depends strongly on the apoplastic pathway	 The ossut1 and ossut4 mutants presented a decrease of grain yield, implying important roles of OsSUTs in phloem loading
OsSUT1	Os03g0170900	LOC_Os03g07480	plasma membrane	Phloem loading in rice leaves depends strongly on the apoplastic pathway	 Moreover, the expression level of OsSUT1 was much higher than that of other plasma membrane localized OsSUTs in the source leaf
OsSUT1	Os03g0170900	LOC_Os03g07480	development	Essentiality for rice fertility and alternative splicing of OsSUT1.	 Observation of caryopsis development revealed that the endosperm of OsSUT1 mutants failed to cellularize and did not show any sign of seed-filling
OsSUT1	Os03g0170900	LOC_Os03g07480	development	Essentiality for rice fertility and alternative splicing of OsSUT1.	 These results indicate that OsSUT1 is indispensable during the rice reproductive stage particularly for caryopsis development
OsSUT1	Os03g0170900	LOC_Os03g07480	reproductive	Essentiality for rice fertility and alternative splicing of OsSUT1.	 These results indicate that OsSUT1 is indispensable during the rice reproductive stage particularly for caryopsis development
OsSUT1	Os03g0170900	LOC_Os03g07480	endosperm	Essentiality for rice fertility and alternative splicing of OsSUT1.	 Observation of caryopsis development revealed that the endosperm of OsSUT1 mutants failed to cellularize and did not show any sign of seed-filling
OsSUT1	Os03g0170900	LOC_Os03g07480	endosperm	Essentiality for rice fertility and alternative splicing of OsSUT1.	 Consistently, OsSUT1 was identified to express strongly in developing caryopsis of wild-type rice, particularly in the nucellar epidermis and aleurone which are critical for the uptake of nutrients into the endosperm
OsSUT1	Os03g0170900	LOC_Os03g07480	epidermis	Essentiality for rice fertility and alternative splicing of OsSUT1.	 Consistently, OsSUT1 was identified to express strongly in developing caryopsis of wild-type rice, particularly in the nucellar epidermis and aleurone which are critical for the uptake of nutrients into the endosperm
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	leaf	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	Analysis of the OsSUT2 promoter::beta-glucuronidase transgenic rice indicated that this gene is highly expressed in leaf mesophyll cells, emerging lateral roots, pedicels of fertilized spikelets, and cross cell layers of seed coats
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	leaf	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	In vegetative organs, transcripts of OsSUT2M were higher in source leaf blades than in other organs at the same development stage, whereas transcripts of OsSUT5Z were less traceable in all organs investigated
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	grain	Sugar transporters involved in flowering and grain development of rice	To investigate sugar transport processes during flowering and in developing grains of rice, we newly isolated two genomic clonesOsSUT2(Oryzasativasucrosetransporter 2) andOsMST5(Oryzasativamonosaccharidetransporter 5) and their corresponding cDNAs
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	grain	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	The ossut2 mutant exhibited a growth retardation phenotype with a significant reduction in tiller number, plant height, 1,000-grain weight, and root dry weight compared with the controls, the wild type, and complemented transgenic lines
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	panicle	Sugar transporters involved in flowering and grain development of rice	Northern blot analysis revealed thatOsSUT2andOsMST5mRNA accumulates in panicles before pollination
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	spikelet	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	Analysis of the OsSUT2 promoter::beta-glucuronidase transgenic rice indicated that this gene is highly expressed in leaf mesophyll cells, emerging lateral roots, pedicels of fertilized spikelets, and cross cell layers of seed coats
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	root	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	Analysis of the OsSUT2 promoter::beta-glucuronidase transgenic rice indicated that this gene is highly expressed in leaf mesophyll cells, emerging lateral roots, pedicels of fertilized spikelets, and cross cell layers of seed coats
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	root	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	The ossut2 mutant exhibited a growth retardation phenotype with a significant reduction in tiller number, plant height, 1,000-grain weight, and root dry weight compared with the controls, the wild type, and complemented transgenic lines
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	growth	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	The ossut2 mutant exhibited a growth retardation phenotype with a significant reduction in tiller number, plant height, 1,000-grain weight, and root dry weight compared with the controls, the wild type, and complemented transgenic lines
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	growth	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	transporter	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	tiller	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	The ossut2 mutant exhibited a growth retardation phenotype with a significant reduction in tiller number, plant height, 1,000-grain weight, and root dry weight compared with the controls, the wild type, and complemented transgenic lines
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	transporter	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	Two sucrose transporter (SUT) cDNAs, OsSUT2M and OsSUT5Z, were isolated from rice (Oryza sativa L
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	transporter	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	The TopPred program suggested that both sucrose transporter proteins, OsSUT2M and OsSUT5Z, consist of potentially 12 transmembrane domains
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	transporter	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	seed	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	Analysis of the OsSUT2 promoter::beta-glucuronidase transgenic rice indicated that this gene is highly expressed in leaf mesophyll cells, emerging lateral roots, pedicels of fertilized spikelets, and cross cell layers of seed coats
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	vegetative	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	In vegetative organs, transcripts of OsSUT2M were higher in source leaf blades than in other organs at the same development stage, whereas transcripts of OsSUT5Z were less traceable in all organs investigated
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	flower	Sugar transporters involved in flowering and grain development of rice	To investigate sugar transport processes during flowering and in developing grains of rice, we newly isolated two genomic clonesOsSUT2(Oryzasativasucrosetransporter 2) andOsMST5(Oryzasativamonosaccharidetransporter 5) and their corresponding cDNAs
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	transporter	Sugar transporters involved in flowering and grain development of rice	To investigate sugar transport processes during flowering and in developing grains of rice, we newly isolated two genomic clonesOsSUT2(Oryzasativasucrosetransporter 2) andOsMST5(Oryzasativamonosaccharidetransporter 5) and their corresponding cDNAs
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	seed	Sugar transporters involved in flowering and grain development of rice	These data presented suggest that bothOsSUT2andOsMST5 play a role during the development at the early stage of the seed development
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	tiller number	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	The ossut2 mutant exhibited a growth retardation phenotype with a significant reduction in tiller number, plant height, 1,000-grain weight, and root dry weight compared with the controls, the wild type, and complemented transgenic lines
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	transporter	The sucrose transporter gene family in rice	In this paper we report the identification, cloning and expression analysis of four putative sucrose transporter (SUT) genes from rice, designated OsSUT2, 3, 4 and 5
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	lateral root	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	Analysis of the OsSUT2 promoter::beta-glucuronidase transgenic rice indicated that this gene is highly expressed in leaf mesophyll cells, emerging lateral roots, pedicels of fertilized spikelets, and cross cell layers of seed coats
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	grain weight	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	The ossut2 mutant exhibited a growth retardation phenotype with a significant reduction in tiller number, plant height, 1,000-grain weight, and root dry weight compared with the controls, the wild type, and complemented transgenic lines
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	seed development	Sugar transporters involved in flowering and grain development of rice	These data presented suggest that bothOsSUT2andOsMST5 play a role during the development at the early stage of the seed development
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	height	Impaired function of the tonoplast-localized sucrose transporter in rice, OsSUT2, limits the transport of vacuolar reserve sucrose and affects plant growth	The ossut2 mutant exhibited a growth retardation phenotype with a significant reduction in tiller number, plant height, 1,000-grain weight, and root dry weight compared with the controls, the wild type, and complemented transgenic lines
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	pollen	Sugar transporters involved in flowering and grain development of rice	In situ hybridization analysis showed thatOsSUT2transcript is specific to the developing pollen
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	grain	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	grain size	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	panicle	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	grain number	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	sugar	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 GFD1 protein was partially localized on the plasma membrane and in the Golgi apparatus, and was finally verified to interact with two sugar transporters, OsSWEET4 and OsSUT2
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	plasma membrane	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 GFD1 protein was partially localized on the plasma membrane and in the Golgi apparatus, and was finally verified to interact with two sugar transporters, OsSWEET4 and OsSUT2
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	grain-filling	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSUT2|OsSUT2M	Os12g0641400	LOC_Os12g44380	sugar transport	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 GFD1 protein was partially localized on the plasma membrane and in the Golgi apparatus, and was finally verified to interact with two sugar transporters, OsSWEET4 and OsSUT2
OsSUT5|OsSUT5Z	Os02g0576600	LOC_Os02g36700	leaf	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	In vegetative organs, transcripts of OsSUT2M were higher in source leaf blades than in other organs at the same development stage, whereas transcripts of OsSUT5Z were less traceable in all organs investigated
OsSUT5|OsSUT5Z	Os02g0576600	LOC_Os02g36700	transporter	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	Two sucrose transporter (SUT) cDNAs, OsSUT2M and OsSUT5Z, were isolated from rice (Oryza sativa L
OsSUT5|OsSUT5Z	Os02g0576600	LOC_Os02g36700	transporter	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	The TopPred program suggested that both sucrose transporter proteins, OsSUT2M and OsSUT5Z, consist of potentially 12 transmembrane domains
OsSUT5|OsSUT5Z	Os02g0576600	LOC_Os02g36700	transporter	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z
OsSUT5|OsSUT5Z	Os02g0576600	LOC_Os02g36700	transporter	Transport activity of rice sucrose transporters OsSUT1 and OsSUT5	Transport activity of rice sucrose transporters OsSUT1 and OsSUT5
OsSUT5|OsSUT5Z	Os02g0576600	LOC_Os02g36700	vegetative	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z	In vegetative organs, transcripts of OsSUT2M were higher in source leaf blades than in other organs at the same development stage, whereas transcripts of OsSUT5Z were less traceable in all organs investigated
OsSUT5|OsSUT5Z	Os02g0576600	LOC_Os02g36700	phloem	Phloem loading in rice leaves depends strongly on the apoplastic pathway	Cross sections of the GUS transgenic plant showed that the signals of OsSUT1 and OsSUT5 occurred in the phloem companion cells
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	photosynthesis	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64)	The possible mechanism could be that OsSUV3 helicase functions in salinity stress tolerance by improving photosynthesis and antioxidant machinery in transgenic rice
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	photosynthesis	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64)	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64)
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salinity	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64)	The possible mechanism could be that OsSUV3 helicase functions in salinity stress tolerance by improving photosynthesis and antioxidant machinery in transgenic rice
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salinity	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64)	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64)
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salinity stress	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64)	The possible mechanism could be that OsSUV3 helicase functions in salinity stress tolerance by improving photosynthesis and antioxidant machinery in transgenic rice
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salinity stress	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64)	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64)
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	bidirectional helicase	Rice SUV3 is a bidirectional helicase that binds both DNA and RNA	Rice SUV3 is a bidirectional helicase that binds both DNA and RNA
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	helicase	Rice SUV3 is a bidirectional helicase that binds both DNA and RNA	Rice SUV3 is a bidirectional helicase that binds both DNA and RNA
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salt	Salt tolerant SUV3 overexpressing transgenic rice plants conserve physicochemical properties and microbial communities of rhizosphere.	Salt tolerant SUV3 overexpressing transgenic rice plants conserve physicochemical properties and microbial communities of rhizosphere.
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salt	Salt tolerant SUV3 overexpressing transgenic rice plants conserve physicochemical properties and microbial communities of rhizosphere.	In the present study, SUV3 overexpressing salt tolerant transgenic rice evaluated in New Delhi and Cuttack soil conditions for their effects on physicochemical and biological properties of rhizosphere
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salt	Salt tolerant SUV3 overexpressing transgenic rice plants conserve physicochemical properties and microbial communities of rhizosphere.	The present findings suggest ecologically pertinent of salt tolerant SUV3 rice to sustain the health and usual functions of the rhizospheric organisms
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	growth	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	In response to stress, OsSUV3 rice plants maintained plant hormone levels that regulate the expression of several stress-induced genes and reduce adverse effects of salt on plant growth and development and therefore sustains crop productivity
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salinity	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salt	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	Here, we report further analysis of the transgenic OsSUV3 rice plants under salt stress
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salt	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	In response to stress, OsSUV3 rice plants maintained plant hormone levels that regulate the expression of several stress-induced genes and reduce adverse effects of salt on plant growth and development and therefore sustains crop productivity
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	salt stress	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	Here, we report further analysis of the transgenic OsSUV3 rice plants under salt stress
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	stress	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	Here, we report further analysis of the transgenic OsSUV3 rice plants under salt stress
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	stress	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	A similar trend of endogenous plant hormones profile was also reflected in the T2 generation of OsSUV3 transgenic rice under defined parameters and stress condition
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	development	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	In response to stress, OsSUV3 rice plants maintained plant hormone levels that regulate the expression of several stress-induced genes and reduce adverse effects of salt on plant growth and development and therefore sustains crop productivity
OsSUV3|SUV3	Os03g0746500	LOC_Os03g53500	plant growth	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	In response to stress, OsSUV3 rice plants maintained plant hormone levels that regulate the expression of several stress-induced genes and reduce adverse effects of salt on plant growth and development and therefore sustains crop productivity
OsSUVH7	Os01g0811300	LOC_Os01g59620	transcription factor	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress	Using comparative interactomics, we isolated two OsBAG4-interacting proteins, OsMYB106 (a MYB transcription factor) and OsSUVH7 (a DNA methylation reader), that were crucial for OsHKT1;5 expression
OsSUVH7	Os01g0811300	LOC_Os01g59620	salt	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress	Here, we present evidence that a protein complex consisting of rice BCL-2-ASSOCIATED ATHANOGENE4 (OsBAG4), OsMYB106, and OsSUVH7 regulates OsHKT1;5 expression in response to salt stress
OsSUVH7	Os01g0811300	LOC_Os01g59620	salt	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress	Elimination of the MITE or knockout of OsMYB106 or OsSUVH7 decreased OsHKT1;5 expression and increased salt sensitivity
OsSUVH7	Os01g0811300	LOC_Os01g59620	salt stress	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress	Here, we present evidence that a protein complex consisting of rice BCL-2-ASSOCIATED ATHANOGENE4 (OsBAG4), OsMYB106, and OsSUVH7 regulates OsHKT1;5 expression in response to salt stress
OsSUVH7	Os01g0811300	LOC_Os01g59620	stress	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress	Here, we present evidence that a protein complex consisting of rice BCL-2-ASSOCIATED ATHANOGENE4 (OsBAG4), OsMYB106, and OsSUVH7 regulates OsHKT1;5 expression in response to salt stress
OsSUVH7	Os01g0811300	LOC_Os01g59620	Salt Sensitivity	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress	Elimination of the MITE or knockout of OsMYB106 or OsSUVH7 decreased OsHKT1;5 expression and increased salt sensitivity
OsSWAP70A	Os03g0666200	LOC_Os03g46340	defense	SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice	Reduction of OsSWAP70A and OsSWAP70B mRNA levels by RNA interference resulted in the suppression of chitin elicitor-induced defense gene expression and ROS production
OsSWAP70B	Os07g0138100	LOC_Os07g04550	defense	SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice	Reduction of OsSWAP70A and OsSWAP70B mRNA levels by RNA interference resulted in the suppression of chitin elicitor-induced defense gene expression and ROS production
OsSWC4	Os05g0540800	LOC_Os05g46330	pollen	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Loss of OsSWC4 function exhibited defects in pollen germination and failure to generate seeds, whereas knockdown of OsSWC4 resulted in reduced height and fewer tillers
OsSWC4	Os05g0540800	LOC_Os05g46330	gibberellin	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsSWC4	Os05g0540800	LOC_Os05g46330	ga	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsSWC4	Os05g0540800	LOC_Os05g46330	ga	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 OsSWC4 was directly bound to the AT-rich region of GA biosynthesis genes, which in turn accomplished H2A
OsSWC4	Os05g0540800	LOC_Os05g46330	cell elongation	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsSWC4	Os05g0540800	LOC_Os05g46330	height	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Loss of OsSWC4 function exhibited defects in pollen germination and failure to generate seeds, whereas knockdown of OsSWC4 resulted in reduced height and fewer tillers
OsSWC4	Os05g0540800	LOC_Os05g46330	height	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsSWC4	Os05g0540800	LOC_Os05g46330	Gibberellin	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsSWC4	Os05g0540800	LOC_Os05g46330	GA	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsSWC4	Os05g0540800	LOC_Os05g46330	GA	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 OsSWC4 was directly bound to the AT-rich region of GA biosynthesis genes, which in turn accomplished H2A
OsSWC4	Os05g0540800	LOC_Os05g46330	 ga 	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsSWC4	Os05g0540800	LOC_Os05g46330	 ga 	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 OsSWC4 was directly bound to the AT-rich region of GA biosynthesis genes, which in turn accomplished H2A
OsSWC4	Os05g0540800	LOC_Os05g46330	GA biosynthesis	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsSWC4	Os05g0540800	LOC_Os05g46330	GA biosynthesis	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 OsSWC4 was directly bound to the AT-rich region of GA biosynthesis genes, which in turn accomplished H2A
OsSWC4	Os05g0540800	LOC_Os05g46330	internode elongation	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.
OsSWC4	Os05g0540800	LOC_Os05g46330	internode elongation	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Together, our study provides insights into the mechanisms involving OsSWC4 and OsYAF9 forming a protein complex to promote rice internode elongation with H2A
OsSWEET11b	Os09g0508250	LOC_Os09g32992	fertility	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 We identified OsSWEET11b with roles in male fertility and potential bacterial blight (BB) susceptibility in rice
OsSWEET11b	Os09g0508250	LOC_Os09g32992	fertility	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 The identification of OsSWEET11b is relevant for fertility and for protecting rice against emerging Xoo strains that target OsSWEET11b
OsSWEET11b	Os09g0508250	LOC_Os09g32992	blight	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 We identified OsSWEET11b with roles in male fertility and potential bacterial blight (BB) susceptibility in rice
OsSWEET11b	Os09g0508250	LOC_Os09g32992	bacterial blight	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 We identified OsSWEET11b with roles in male fertility and potential bacterial blight (BB) susceptibility in rice
OsSWEET11b	Os09g0508250	LOC_Os09g32992	ga	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 However, in contrast with the Arabidopsis homologues, OsSWEET11b did not mediate detectable GA transport
OsSWEET11b	Os09g0508250	LOC_Os09g32992	xoo	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 oryzae (Xoo) to cause disease, identifying OsSWEET11b as a potential BB susceptibility gene and demonstrating that the induction of host sucrose uniporter activity is key to virulence of Xoo
OsSWEET11b	Os09g0508250	LOC_Os09g32992	xoo	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 The identification of OsSWEET11b is relevant for fertility and for protecting rice against emerging Xoo strains that target OsSWEET11b
OsSWEET11b	Os09g0508250	LOC_Os09g32992	GA	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 However, in contrast with the Arabidopsis homologues, OsSWEET11b did not mediate detectable GA transport
OsSWEET11b	Os09g0508250	LOC_Os09g32992	 ga 	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 However, in contrast with the Arabidopsis homologues, OsSWEET11b did not mediate detectable GA transport
OsSWEET11b	Os09g0508250	LOC_Os09g32992	sucrose	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 oryzae (Xoo) to cause disease, identifying OsSWEET11b as a potential BB susceptibility gene and demonstrating that the induction of host sucrose uniporter activity is key to virulence of Xoo
OsSWEET11b	Os09g0508250	LOC_Os09g32992	Xoo	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 oryzae (Xoo) to cause disease, identifying OsSWEET11b as a potential BB susceptibility gene and demonstrating that the induction of host sucrose uniporter activity is key to virulence of Xoo
OsSWEET11b	Os09g0508250	LOC_Os09g32992	Xoo	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 The identification of OsSWEET11b is relevant for fertility and for protecting rice against emerging Xoo strains that target OsSWEET11b
OsSWEET11b	Os09g0508250	LOC_Os09g32992	 xoo 	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	 The identification of OsSWEET11b is relevant for fertility and for protecting rice against emerging Xoo strains that target OsSWEET11b
OsSWEET11b	Os09g0508250	LOC_Os09g32992	sugar transport	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility
OsSWEET11b	Os09g0508250	LOC_Os09g32992	male fertility	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility
OsSWEET15	Os02g0513100	LOC_Os02g30910	seed filling	SWEET11 and 15 as key players in seed filling in rice.	SWEET11 and 15 as key players in seed filling in rice.
OsSWEET15	Os02g0513100	LOC_Os02g30910	seed filling	SWEET11 and 15 as key players in seed filling in rice.	OsSWEET11 and 15 are essential for seed filling
OsSWEET15	Os02g0513100	LOC_Os02g30910	sucrose translocation	SWEET11 and 15 as key players in seed filling in rice.	The accumulation of starch in the pericarp of ossweet11 and ossweet11;15 double mutants supports the critical roles of OsSWEET11 and OsSWEET15 in sucrose translocation and mobilization towards the developing endosperm.
OsSWEET15	Os02g0513100	LOC_Os02g30910	transcription factor	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	 Transactivation analyses showed that an abscisic acid (ABA)-responsive transcription factor OsbZIP72 directly binds to the promoters of OsSWEET13 and OsSWEET15 and activates their expression
OsSWEET15	Os02g0513100	LOC_Os02g30910	transcription factor	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	 Taken together, the results showed that the higher expressions of OsSWEET13 and OsSWEET15 genes, induced by binding of an ABA-responsive transcription factor OsbZIP72 to the promoters, potentially modulate sucrose transport and distribution in response to the abiotic stresses
OsSWEET15	Os02g0513100	LOC_Os02g30910	drought	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
OsSWEET15	Os02g0513100	LOC_Os02g30910	salt	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
OsSWEET15	Os02g0513100	LOC_Os02g30910	abiotic stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	 Expression analyses of SWEET genes and histochemical analysis of ��-glucuronidase-reporter transgenic plants suggested that OsSWEET13 and OsSWEET15 are major SWEET transporters regulating the sucrose transport and levels in response to the abiotic stresses
OsSWEET15	Os02g0513100	LOC_Os02g30910	abiotic stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	 Taken together, the results showed that the higher expressions of OsSWEET13 and OsSWEET15 genes, induced by binding of an ABA-responsive transcription factor OsbZIP72 to the promoters, potentially modulate sucrose transport and distribution in response to the abiotic stresses
OsSWEET15	Os02g0513100	LOC_Os02g30910	salt stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
OsSWEET15	Os02g0513100	LOC_Os02g30910	stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
OsSWEET15	Os02g0513100	LOC_Os02g30910	biotic stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	 Expression analyses of SWEET genes and histochemical analysis of ��-glucuronidase-reporter transgenic plants suggested that OsSWEET13 and OsSWEET15 are major SWEET transporters regulating the sucrose transport and levels in response to the abiotic stresses
OsSWEET15	Os02g0513100	LOC_Os02g30910	biotic stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	 Taken together, the results showed that the higher expressions of OsSWEET13 and OsSWEET15 genes, induced by binding of an ABA-responsive transcription factor OsbZIP72 to the promoters, potentially modulate sucrose transport and distribution in response to the abiotic stresses
OsSWEET15	Os02g0513100	LOC_Os02g30910	abscisic acid	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	 Transactivation analyses showed that an abscisic acid (ABA)-responsive transcription factor OsbZIP72 directly binds to the promoters of OsSWEET13 and OsSWEET15 and activates their expression
OsSWEET15	Os02g0513100	LOC_Os02g30910	sucrose	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
OsSWEET15	Os02g0513100	LOC_Os02g30910	sucrose	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	 Expression analyses of SWEET genes and histochemical analysis of ��-glucuronidase-reporter transgenic plants suggested that OsSWEET13 and OsSWEET15 are major SWEET transporters regulating the sucrose transport and levels in response to the abiotic stresses
OsSWEET15	Os02g0513100	LOC_Os02g30910	sucrose	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	 Taken together, the results showed that the higher expressions of OsSWEET13 and OsSWEET15 genes, induced by binding of an ABA-responsive transcription factor OsbZIP72 to the promoters, potentially modulate sucrose transport and distribution in response to the abiotic stresses
OsSWEET15	Os02g0513100	LOC_Os02g30910	development	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 Notably, the ovaries in the blighted grains of the ossweet15 mutants expanded after flowering but terminated their development before the endosperm cellularization stage and subsequently glucuronidase (GUS) and Green Fluorescent Protein (GFP) reporter lines representing the OsSWEET15 expression showed that the gene was expressed in the endosperm tissues surrounding the embryo, which supposedly supplies nutrients to sustain embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	development	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results together with the protein&#x27;s demonstrated sucrose transport capacity and plasma membrane localization suggest that OsSWEET15 plays a prominent role during the caryopsis formation stage, probably by releasing sucrose from the endosperm to support embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	fertility	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	We show that the knockout of a sugar transporter gene OsSWEET15 led to a significant drop in rice fertility with around half of the knockout mutant&#x27;s spikelets bearing blighted or empty grains
OsSWEET15	Os02g0513100	LOC_Os02g30910	pollen	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 By contrast, the empty grains were probably caused by the reduced pollen viability of the ossweet15 mutants
OsSWEET15	Os02g0513100	LOC_Os02g30910	pollen	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results indicate that both OsSWEET15 and OsSWEET11 play important and similar roles in rice pollen development, caryopsis formation and seed-setting, in addition to their function in seed-filling that was demonstrated previously
OsSWEET15	Os02g0513100	LOC_Os02g30910	pollen development	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results indicate that both OsSWEET15 and OsSWEET11 play important and similar roles in rice pollen development, caryopsis formation and seed-setting, in addition to their function in seed-filling that was demonstrated previously
OsSWEET15	Os02g0513100	LOC_Os02g30910	transporter	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	We show that the knockout of a sugar transporter gene OsSWEET15 led to a significant drop in rice fertility with around half of the knockout mutant&#x27;s spikelets bearing blighted or empty grains
OsSWEET15	Os02g0513100	LOC_Os02g30910	endosperm	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 Notably, the ovaries in the blighted grains of the ossweet15 mutants expanded after flowering but terminated their development before the endosperm cellularization stage and subsequently glucuronidase (GUS) and Green Fluorescent Protein (GFP) reporter lines representing the OsSWEET15 expression showed that the gene was expressed in the endosperm tissues surrounding the embryo, which supposedly supplies nutrients to sustain embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	endosperm	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results together with the protein&#x27;s demonstrated sucrose transport capacity and plasma membrane localization suggest that OsSWEET15 plays a prominent role during the caryopsis formation stage, probably by releasing sucrose from the endosperm to support embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	sugar	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	We show that the knockout of a sugar transporter gene OsSWEET15 led to a significant drop in rice fertility with around half of the knockout mutant&#x27;s spikelets bearing blighted or empty grains
OsSWEET15	Os02g0513100	LOC_Os02g30910	plasma membrane	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results together with the protein&#x27;s demonstrated sucrose transport capacity and plasma membrane localization suggest that OsSWEET15 plays a prominent role during the caryopsis formation stage, probably by releasing sucrose from the endosperm to support embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	sucrose	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results together with the protein&#x27;s demonstrated sucrose transport capacity and plasma membrane localization suggest that OsSWEET15 plays a prominent role during the caryopsis formation stage, probably by releasing sucrose from the endosperm to support embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	flowering	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 Notably, the ovaries in the blighted grains of the ossweet15 mutants expanded after flowering but terminated their development before the endosperm cellularization stage and subsequently glucuronidase (GUS) and Green Fluorescent Protein (GFP) reporter lines representing the OsSWEET15 expression showed that the gene was expressed in the endosperm tissues surrounding the embryo, which supposedly supplies nutrients to sustain embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	sugar transport	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	We show that the knockout of a sugar transporter gene OsSWEET15 led to a significant drop in rice fertility with around half of the knockout mutant&#x27;s spikelets bearing blighted or empty grains
OsSWEET15	Os02g0513100	LOC_Os02g30910	embryo	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.
OsSWEET15	Os02g0513100	LOC_Os02g30910	embryo	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 Notably, the ovaries in the blighted grains of the ossweet15 mutants expanded after flowering but terminated their development before the endosperm cellularization stage and subsequently glucuronidase (GUS) and Green Fluorescent Protein (GFP) reporter lines representing the OsSWEET15 expression showed that the gene was expressed in the endosperm tissues surrounding the embryo, which supposedly supplies nutrients to sustain embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	embryo	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results together with the protein&#x27;s demonstrated sucrose transport capacity and plasma membrane localization suggest that OsSWEET15 plays a prominent role during the caryopsis formation stage, probably by releasing sucrose from the endosperm to support embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	embryo development	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 Notably, the ovaries in the blighted grains of the ossweet15 mutants expanded after flowering but terminated their development before the endosperm cellularization stage and subsequently glucuronidase (GUS) and Green Fluorescent Protein (GFP) reporter lines representing the OsSWEET15 expression showed that the gene was expressed in the endosperm tissues surrounding the embryo, which supposedly supplies nutrients to sustain embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	embryo development	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results together with the protein&#x27;s demonstrated sucrose transport capacity and plasma membrane localization suggest that OsSWEET15 plays a prominent role during the caryopsis formation stage, probably by releasing sucrose from the endosperm to support embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	endosperm cellularization	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 Notably, the ovaries in the blighted grains of the ossweet15 mutants expanded after flowering but terminated their development before the endosperm cellularization stage and subsequently glucuronidase (GUS) and Green Fluorescent Protein (GFP) reporter lines representing the OsSWEET15 expression showed that the gene was expressed in the endosperm tissues surrounding the embryo, which supposedly supplies nutrients to sustain embryo development
OsSWEET15	Os02g0513100	LOC_Os02g30910	sucrose transport	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	 These results together with the protein&#x27;s demonstrated sucrose transport capacity and plasma membrane localization suggest that OsSWEET15 plays a prominent role during the caryopsis formation stage, probably by releasing sucrose from the endosperm to support embryo development
OsSWEET3a	Os05g0214300	LOC_Os05g12320	leaf	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	OsSWEET3a expression co-localized with OsGA20ox1 expression in the vascular bundles but not with OsGA3ox2, whose expression was restricted to leaf primordia and young leaves
OsSWEET3a	Os05g0214300	LOC_Os05g12320	seedlings	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	Quantitative reverse transcription PCR, GUS staining, and in situ hybridization revealed that OsSWEET3a was expressed in vascular bundles in basal parts of the seedlings
OsSWEET3a	Os05g0214300	LOC_Os05g12320	seedlings	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	These results suggest that OsSWEET3a is expressed in the vascular tissue of basal parts of seedlings and is involved in the transport of both GA20 and glucose to young leaves, where GA20 is possibly converted to the bioactive GA1 form by OsGA3ox2, during early plant development
OsSWEET3a	Os05g0214300	LOC_Os05g12320	vascular bundle	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	Quantitative reverse transcription PCR, GUS staining, and in situ hybridization revealed that OsSWEET3a was expressed in vascular bundles in basal parts of the seedlings
OsSWEET3a	Os05g0214300	LOC_Os05g12320	vascular bundle	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	OsSWEET3a expression co-localized with OsGA20ox1 expression in the vascular bundles but not with OsGA3ox2, whose expression was restricted to leaf primordia and young leaves
OsSWEET3a	Os05g0214300	LOC_Os05g12320	shoot	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice
OsSWEET3a	Os05g0214300	LOC_Os05g12320	shoot	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	Both knockout and overexpression lines of OsSWEET3a showed defects in germination and early shoot development, which were partially restored by GA, especially GA20
OsSWEET3a	Os05g0214300	LOC_Os05g12320	development	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice
OsSWEET3a	Os05g0214300	LOC_Os05g12320	development	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	These results suggest that OsSWEET3a is expressed in the vascular tissue of basal parts of seedlings and is involved in the transport of both GA20 and glucose to young leaves, where GA20 is possibly converted to the bioactive GA1 form by OsGA3ox2, during early plant development
OsSWEET3a	Os05g0214300	LOC_Os05g12320	plant development	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	These results suggest that OsSWEET3a is expressed in the vascular tissue of basal parts of seedlings and is involved in the transport of both GA20 and glucose to young leaves, where GA20 is possibly converted to the bioactive GA1 form by OsGA3ox2, during early plant development
OsSWEET3a	Os05g0214300	LOC_Os05g12320	gibberellin	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice
OsSWEET3a	Os05g0214300	LOC_Os05g12320	transporter	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice
OsSWEET3a	Os05g0214300	LOC_Os05g12320	ga	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	OsSWEET3a efficiently transports GAs in the C13-hydroxylation pathway of GA biosynthesis
OsSWEET3a	Os05g0214300	LOC_Os05g12320	Gibberellin	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice
OsSWEET3a	Os05g0214300	LOC_Os05g12320	GA	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	OsSWEET3a efficiently transports GAs in the C13-hydroxylation pathway of GA biosynthesis
OsSWEET3a	Os05g0214300	LOC_Os05g12320	GA biosynthesis	The dual function of OsSWEET3a as a gibberellin and glucose transporter is important for young shoot development in rice	OsSWEET3a efficiently transports GAs in the C13-hydroxylation pathway of GA biosynthesis
OsSWEET4	Os02g0301100	LOC_Os02g19820	seed	Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport.	Mutants of both maize ZmSWEET4c and its rice ortholog OsSWEET4 are defective in seed filling, indicating that a lack of hexose transport at the BETL impairs further transfer of sugars imported from the maternal phloem
OsSWEET4	Os02g0301100	LOC_Os02g19820	phloem	Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport.	Mutants of both maize ZmSWEET4c and its rice ortholog OsSWEET4 are defective in seed filling, indicating that a lack of hexose transport at the BETL impairs further transfer of sugars imported from the maternal phloem
OsSWEET4	Os02g0301100	LOC_Os02g19820	grain	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSWEET4	Os02g0301100	LOC_Os02g19820	grain size	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSWEET4	Os02g0301100	LOC_Os02g19820	panicle	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSWEET4	Os02g0301100	LOC_Os02g19820	grain number	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSWEET4	Os02g0301100	LOC_Os02g19820	sugar	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 GFD1 protein was partially localized on the plasma membrane and in the Golgi apparatus, and was finally verified to interact with two sugar transporters, OsSWEET4 and OsSUT2
OsSWEET4	Os02g0301100	LOC_Os02g19820	plasma membrane	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 GFD1 protein was partially localized on the plasma membrane and in the Golgi apparatus, and was finally verified to interact with two sugar transporters, OsSWEET4 and OsSUT2
OsSWEET4	Os02g0301100	LOC_Os02g19820	grain-filling	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 Genetic analyses showed that GFD1 might control grain-filling duration through OsSWEET4, adjust grain size with OsSUT2 and synergistically modulate grain number per panicle with both OsSUT2 and OsSWEET4
OsSWEET4	Os02g0301100	LOC_Os02g19820	sugar transport	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	 GFD1 protein was partially localized on the plasma membrane and in the Golgi apparatus, and was finally verified to interact with two sugar transporters, OsSWEET4 and OsSUT2
OsSWEET5	Os05g0588500	LOC_Os05g51090	growth	Overexpression of OsSWEET5 in rice causes growth retardation and precocious senescence.	Overexpression of OsSWEET5 in rice causes growth retardation and precocious senescence.
OsSWEET5	Os05g0588500	LOC_Os05g51090	auxin	Overexpression of OsSWEET5 in rice causes growth retardation and precocious senescence.	Taken together, our findings suggest that OsSWEET5 plays a crucial role in regulating the crosstalk between sugar and auxin in rice
OsSWEET5	Os05g0588500	LOC_Os05g51090	transporter	Overexpression of OsSWEET5 in rice causes growth retardation and precocious senescence.	Heterologous expression assay indicated that OsSWEET5 encoded a galactose transporter in yeast
OsSWEET5	Os05g0588500	LOC_Os05g51090	sugar	Overexpression of OsSWEET5 in rice causes growth retardation and precocious senescence.	Taken together, our findings suggest that OsSWEET5 plays a crucial role in regulating the crosstalk between sugar and auxin in rice
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	root	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought resistance	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	drought stress	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	root growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	root growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	The reported drought resistance or root growth-related genes that were positively regulated by OsNMCP1 were negatively regulated by OsSWI3C under drought stress conditions, and OsSWI3C overexpression led to decreased drought resistance
OsSWI3C|OsCHB705|CHB705	Os11g0183700	LOC_Os11g08080	root growth	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice	We propose that the interaction between OsNMCP1 and OsSWI3C under drought stress conditions may lead to the release of OsSWI3C from the SWI/SNF gene silencing complex, thus changing chromatin accessibility in the genes related to root growth and drought resistance
OsSWN1	Os06g0131700	LOC_Os06g04090	lignin	Change in lignin structure, but not in lignin content, in transgenic poplar overexpressing the rice master regulator of secondary cell wall biosynthesis.	OsSWN1 triggers the induction of polysaccharide and lignin biosynthetic gene expressions, however resulting in no significant impact on the lignin content in the transgenic plants
OsSYF2	Os06g0711600	LOC_Os06g49740	grain	A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.	A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.
OsSYF2	Os06g0711600	LOC_Os06g49740	grain	A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.	The phenotypes of transgenic lines indicated that OsSYF2 positively regulates grain length via its influence on cell expansion
OsSYF2	Os06g0711600	LOC_Os06g49740	grain length	A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.	A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.
OsSYF2	Os06g0711600	LOC_Os06g49740	grain length	A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.	The phenotypes of transgenic lines indicated that OsSYF2 positively regulates grain length via its influence on cell expansion
OsSYF2	Os06g0711600	LOC_Os06g49740	sugar	A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.	Transcriptomic analysis showed that OsSYF2 controls the expression and pre-mRNA alternative splicing of genes involved in sugar metabolism
OsSYL2	Os02g0733900	LOC_Os02g50110	style length	OsSYL2 AA , an allele identified by gene-based association, increases style length in rice (Oryza sativa L.)	OsSYL2 AA , an allele identified by gene-based association, increases style length in rice (Oryza sativa L.)
OsSYP121	Os03g0787000	LOC_Os03g57310	resistance	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.
OsSYP121	Os03g0787000	LOC_Os03g57310	resistance	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	Overexpression of OsSYP121 in Su resulted in enhanced resistance to blast
OsSYP121	Os03g0787000	LOC_Os03g57310	resistance	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	The interaction between OsSYP121 and OsSNAP32 may contribute to host resistance to rice blast
OsSYP121	Os03g0787000	LOC_Os03g57310	resistance	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	Our study reveals that OsSYP121 plays an important role in rice blast resistance as it is a key component in vesicle trafficking
OsSYP121	Os03g0787000	LOC_Os03g57310	blast	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	OsSYP121 is plasma membrane-localized and its expression was obviously induced by the rice blast in both the blast-resistant rice landrace Hei (Heikezijing) and the blast-susceptible landrace Su (Suyunuo)
OsSYP121	Os03g0787000	LOC_Os03g57310	blast	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	Overexpression of OsSYP121 in Su resulted in enhanced resistance to blast
OsSYP121	Os03g0787000	LOC_Os03g57310	blast	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	However, knockdown of OsSYP121 expression in the resistant cultivar Hei resulted in susceptibility to the blast fungus
OsSYP121	Os03g0787000	LOC_Os03g57310	blast	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	The interaction between OsSYP121 and OsSNAP32 may contribute to host resistance to rice blast
OsSYP121	Os03g0787000	LOC_Os03g57310	blast	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	Our study reveals that OsSYP121 plays an important role in rice blast resistance as it is a key component in vesicle trafficking
OsSYP121	Os03g0787000	LOC_Os03g57310	plasma membrane	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	OsSYP121 is plasma membrane-localized and its expression was obviously induced by the rice blast in both the blast-resistant rice landrace Hei (Heikezijing) and the blast-susceptible landrace Su (Suyunuo)
OsSYP121	Os03g0787000	LOC_Os03g57310	resistant	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	However, knockdown of OsSYP121 expression in the resistant cultivar Hei resulted in susceptibility to the blast fungus
OsSYP121	Os03g0787000	LOC_Os03g57310	blast resistance	OsSYP121 accumulates at fungi penetration sites and mediates host resistance to rice blast.	Our study reveals that OsSYP121 plays an important role in rice blast resistance as it is a key component in vesicle trafficking
OsSYP131a	Os07g0164300	LOC_Os07g07000	fertility	The Rice Qa-SNAREs in SYP13 Subfamily Are Involved in Regulating Arbuscular Mycorrhizal Symbiosis and Seed Fertility.	 After employing CRISPR/Cas9 technique to generate their mutants, the Ossyp131a homozygous mutant T(0) plants exhibited a dwarf phenotype and produced no fertile seeds, indicating a required role of this gene in seed fertility
OsSYP131a	Os07g0164300	LOC_Os07g07000	seed	The Rice Qa-SNAREs in SYP13 Subfamily Are Involved in Regulating Arbuscular Mycorrhizal Symbiosis and Seed Fertility.	 After employing CRISPR/Cas9 technique to generate their mutants, the Ossyp131a homozygous mutant T(0) plants exhibited a dwarf phenotype and produced no fertile seeds, indicating a required role of this gene in seed fertility
OsSYP131a	Os07g0164300	LOC_Os07g07000	dwarf	The Rice Qa-SNAREs in SYP13 Subfamily Are Involved in Regulating Arbuscular Mycorrhizal Symbiosis and Seed Fertility.	 After employing CRISPR/Cas9 technique to generate their mutants, the Ossyp131a homozygous mutant T(0) plants exhibited a dwarf phenotype and produced no fertile seeds, indicating a required role of this gene in seed fertility
OsSYP131b	Os06g0168500	LOC_Os06g07200	Arbuscular Mycorrhizal symbiosis	The Rice Qa-SNAREs in SYP13 Subfamily Are Involved in Regulating Arbuscular Mycorrhizal Symbiosis and Seed Fertility	Loss of Functions of Both OsSYP131b and OsSYP132 Strongly Inhibited AMF Colonization in Rice Roots
OsSYP71	Os05g0553700	LOC_Os05g48020	oxidative	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)	OsSYP71 is an oxidative stress and rice blast response gene that encodes a Qc-SNARE protein in rice
OsSYP71	Os05g0553700	LOC_Os05g48020	oxidative	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)	Overexpression of OsSYP71 in rice showed more tolerance to oxidative stress and resistance to rice blast than wild-type plants
OsSYP71	Os05g0553700	LOC_Os05g48020	oxidative	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)	These results indicate that Qc-SNAREs play an important role in rice response to environmental stresses, and OsSYP71 is useful in engineering crop plants with enhanced tolerance to oxidative stress and resistance to rice blast
OsSYP71	Os05g0553700	LOC_Os05g48020	oxidative	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)
OsSYP71	Os05g0553700	LOC_Os05g48020	blast	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)	OsSYP71 is an oxidative stress and rice blast response gene that encodes a Qc-SNARE protein in rice
OsSYP71	Os05g0553700	LOC_Os05g48020	blast	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)	Overexpression of OsSYP71 in rice showed more tolerance to oxidative stress and resistance to rice blast than wild-type plants
OsSYP71	Os05g0553700	LOC_Os05g48020	blast	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)	These results indicate that Qc-SNAREs play an important role in rice response to environmental stresses, and OsSYP71 is useful in engineering crop plants with enhanced tolerance to oxidative stress and resistance to rice blast
OsSYP71	Os05g0553700	LOC_Os05g48020	blast	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.)
OsSYT-5	Os07g0409100	LOC_Os07g22640	pollen	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 Transgenic lines with suppressed OsSYT-5 gene expression exhibited higher pollen viability and produced more grains compared to the wild type at both normal and drought stress conditions
OsSYT-5	Os07g0409100	LOC_Os07g22640	drought	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.
OsSYT-5	Os07g0409100	LOC_Os07g22640	drought	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 In the water deficit experiment, the transgenic lines with a silenced OsSYT-5 gene exhibited symptoms of drought stress seven days later than the wild type
OsSYT-5	Os07g0409100	LOC_Os07g22640	drought	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 Transgenic lines with suppressed OsSYT-5 gene expression exhibited higher pollen viability and produced more grains compared to the wild type at both normal and drought stress conditions
OsSYT-5	Os07g0409100	LOC_Os07g22640	tolerance	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.
OsSYT-5	Os07g0409100	LOC_Os07g22640	drought tolerance	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.
OsSYT-5	Os07g0409100	LOC_Os07g22640	stress	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 Transgenic lines with suppressed expression of the OsSYT-5 gene exhibited an enhanced photosynthetic rate but reduced stomatal conductance and transpiration during water deficit stress
OsSYT-5	Os07g0409100	LOC_Os07g22640	stress	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 The silencing of the OsSYT-5 gene affected the expression of several genes associated with ABA-related stress signaling in the transgenic rice plants
OsSYT-5	Os07g0409100	LOC_Os07g22640	stress	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 In the water deficit experiment, the transgenic lines with a silenced OsSYT-5 gene exhibited symptoms of drought stress seven days later than the wild type
OsSYT-5	Os07g0409100	LOC_Os07g22640	stress	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 Transgenic lines with suppressed OsSYT-5 gene expression exhibited higher pollen viability and produced more grains compared to the wild type at both normal and drought stress conditions
OsSYT-5	Os07g0409100	LOC_Os07g22640	stomatal	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 Transgenic lines with suppressed expression of the OsSYT-5 gene exhibited an enhanced photosynthetic rate but reduced stomatal conductance and transpiration during water deficit stress
OsSYT-5	Os07g0409100	LOC_Os07g22640	drought stress	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 In the water deficit experiment, the transgenic lines with a silenced OsSYT-5 gene exhibited symptoms of drought stress seven days later than the wild type
OsSYT-5	Os07g0409100	LOC_Os07g22640	drought stress	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	 Transgenic lines with suppressed OsSYT-5 gene expression exhibited higher pollen viability and produced more grains compared to the wild type at both normal and drought stress conditions
OsTAGG1|Os4BGlu13	Os04g0474900	LOC_Os04g39900	gibberellin	Identification of rice Os4BGlu13 as a β-glucosidase which hydrolyzes gibberellin A4 1-O-β-d-glucosyl ester, in addition to tuberonic acid glucoside and salicylic acid derivative glucosides.	Identification of rice Os4BGlu13 as a β-glucosidase which hydrolyzes gibberellin A4 1-O-β-d-glucosyl ester, in addition to tuberonic acid glucoside and salicylic acid derivative glucosides.
OsTAGG1|Os4BGlu13	Os04g0474900	LOC_Os04g39900	salicylic acid	Identification of rice Os4BGlu13 as a β-glucosidase which hydrolyzes gibberellin A4 1-O-β-d-glucosyl ester, in addition to tuberonic acid glucoside and salicylic acid derivative glucosides.	Identification of rice Os4BGlu13 as a β-glucosidase which hydrolyzes gibberellin A4 1-O-β-d-glucosyl ester, in addition to tuberonic acid glucoside and salicylic acid derivative glucosides.
OsTAGG1|Os4BGlu13	Os04g0474900	LOC_Os04g39900	seedlings	Identification of rice Os4BGlu13 as a β-glucosidase which hydrolyzes gibberellin A4 1-O-β-d-glucosyl ester, in addition to tuberonic acid glucoside and salicylic acid derivative glucosides.	The Os4BGlu13 cDNA was amplified from rice seedlings and expressed as an N-terminal thioredoxin-tagged fusion protein in E
OsTAR1	Os05g0169300	LOC_Os05g07720	iaa	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	The increase in IAA content was strongly correlated with the expression of putative IAA biosynthesis genes, OsYUC9, OsYUC11 and OsTAR1, measured by quantitative reverse transcriptase polymerase chain reaction
OsTAR1	Os05g0169300	LOC_Os05g07720	iaa	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development
OsTAR1	Os05g0169300	LOC_Os05g07720	iaa	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA
OsTAR1	Os05g0169300	LOC_Os05g07720	starch	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development
OsTAR1	Os05g0169300	LOC_Os05g07720	grain	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development
OsTAR1	Os05g0169300	LOC_Os05g07720	grain	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA
OsTAR1	Os05g0169300	LOC_Os05g07720	auxin	Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.	Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.
OsTAR1	Os05g0169300	LOC_Os05g07720	tryptophan aminotransferase	Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.	Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.
OsTAR1	Os05g0169300	LOC_Os05g07720	tryptophan aminotransferase	Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.	In this study, we obtained biochemical evidence that the rice tryptophan aminotransferase OsTAR1 converts L-tryptophan to IPyA, and has a Km of 82
OsTAR1	Os05g0169300	LOC_Os05g07720	auxin biosynthesis	Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.	Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.
OsTARL2	Os01g0717400	LOC_Os01g51980	tryptophan aminotransferase	TILLERING AND SMALL GRAIN 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	Meanwhile, deletion of the TSG1 homologs OsTAR1, OsTARL1, and OsTARL2 caused no obvious changes, although the phenotype of the TSG1/OsTAR1 double mutant was intensified and infertile, suggesting gene redundancy in the rice tryptophan aminotransferase family
OsTATC	Os01g0501700	LOC_Os01g31680	drought	Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene	On the other hand, Ostatc, a mutant with weak phenotype, exhibited the pale green phenotype and slight increase in abscisic acid levels upon drought
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	culm	The OsTB1 gene negatively regulates lateral branching in rice	We also demonstrated that a rice strain carrying a classical morphological marker mutation, fine culm 1 (fc1), contain the loss-of-function mutation of OsTB1 and exhibits enhanced lateral branching
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	auxin	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	branching	The OsTB1 gene negatively regulates lateral branching in rice	We also demonstrated that a rice strain carrying a classical morphological marker mutation, fine culm 1 (fc1), contain the loss-of-function mutation of OsTB1 and exhibits enhanced lateral branching
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	branching	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We propose that FC1 acts as an integrator of multiple signaling pathways and is essential to the fine-tuning of shoot branching in rice
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	cytokinin	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	On the other hand, the expression level of FC1 is negatively regulated by cytokinin treatment
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	growth	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Here we report that OsMADS57 interacts with OsTB1 (TEOSINTE BRANCHED1) and targets D14 (Dwarf14) to control the outgrowth of axillary buds in rice
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	shoot	The OsTB1 gene negatively regulates lateral branching in rice	Expression of OsTB1, as examined with a putative promoter-glucuronidase (GUS) gene fusion, was observed throughout the axillary bud, as well as the basal part of the shoot apical meristem, vascular tissues in the pith and the lamina joint
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	meristem	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We found that the increased tillering phenotype of fine culm1 (fc1) mutants of rice is not rescued by the application of 1 microM GR24, a synthetic SL analog
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Treatment with a high concentration of GR24 (10 microM) causes suppression of tiller growth in wild-type plants, but is not effective on fc1 mutants, implying that proper FC1 functioning is required for SLs to inhibit bud growth
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Overexpression of FC1 partially rescued d3-2 defects in the tiller growth and plant height
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	branching	The OsTB1 gene negatively regulates lateral branching in rice	The rice TB1 gene (OsTB1) was first identified based on its sequence similarity with maize TEOSINTE BRANCHED 1 (TB1), which is involved in lateral branching in maize
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	branching	The OsTB1 gene negatively regulates lateral branching in rice	Transgenic rice plants overexpressing OsTB1 exhibited markedly reduced lateral branching without the propagation of axillary buds being affected
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	branching	The OsTB1 gene negatively regulates lateral branching in rice	Taking these data together, we concluded that OsTB1 functions as a negative regulator for lateral branching in rice, presumably through expression in axillary buds
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	branching	The OsTB1 gene negatively regulates lateral branching in rice	The OsTB1 gene negatively regulates lateral branching in rice
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	crown	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	shoot apical meristem	The OsTB1 gene negatively regulates lateral branching in rice	Expression of OsTB1, as examined with a putative promoter-glucuronidase (GUS) gene fusion, was observed throughout the axillary bud, as well as the basal part of the shoot apical meristem, vascular tissues in the pith and the lamina joint
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	lamina	The OsTB1 gene negatively regulates lateral branching in rice	Expression of OsTB1, as examined with a putative promoter-glucuronidase (GUS) gene fusion, was observed throughout the axillary bud, as well as the basal part of the shoot apical meristem, vascular tissues in the pith and the lamina joint
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	growth	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Treatment with a high concentration of GR24 (10 microM) causes suppression of tiller growth in wild-type plants, but is not effective on fc1 mutants, implying that proper FC1 functioning is required for SLs to inhibit bud growth
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	growth	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Overexpression of FC1 partially rescued d3-2 defects in the tiller growth and plant height
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	growth	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	root	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	crown root	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	strigolactone	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Therefore, OsMIR444a-regulated OsMADS57, together with OsTB1, target D14 to control tillering
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	shoot apical meristem	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	height	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	Overexpression of FC1 partially rescued d3-2 defects in the tiller growth and plant height
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tillering	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Therefore, OsMIR444a-regulated OsMADS57, together with OsTB1, target D14 to control tillering
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tillering	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	dwarf	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	Here we report that OsMADS57 interacts with OsTB1 (TEOSINTE BRANCHED1) and targets D14 (Dwarf14) to control the outgrowth of axillary buds in rice
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	dwarf	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	meristem	The OsTB1 gene negatively regulates lateral branching in rice	Expression of OsTB1, as examined with a putative promoter-glucuronidase (GUS) gene fusion, was observed throughout the axillary bud, as well as the basal part of the shoot apical meristem, vascular tissues in the pith and the lamina joint
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	transporter	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	branching	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	In addition, we present observations that suggest that FINE CULM1 (FC1), a rice ortholog of teosinte branched 1 (tb1), possibly works independently of the branching inhibitor pathway
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tillering	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We found that the increased tillering phenotype of fine culm1 (fc1) mutants of rice is not rescued by the application of 1 microM GR24, a synthetic SL analog
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	culm	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We found that the increased tillering phenotype of fine culm1 (fc1) mutants of rice is not rescued by the application of 1 microM GR24, a synthetic SL analog
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	culm	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	culm	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice	In addition, we present observations that suggest that FINE CULM1 (FC1), a rice ortholog of teosinte branched 1 (tb1), possibly works independently of the branching inhibitor pathway
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	shoot	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	shoot	FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice	We propose that FC1 acts as an integrator of multiple signaling pathways and is essential to the fine-tuning of shoot branching in rice
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tillering	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	stem	Production of novel beneficial alleles of a rice yield-related QTL by CRISPR/Cas9.	 Our study of a locus involved in resistance to lodging demonstrated that saturation editing of the qSCSA3-1/OsTB1/SCM3 region led to loss-of-function, normal-like, and gain-of-function plant types, based on OsTB1 expression and stem cross-section area
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	resistance	Production of novel beneficial alleles of a rice yield-related QTL by CRISPR/Cas9.	 Our study of a locus involved in resistance to lodging demonstrated that saturation editing of the qSCSA3-1/OsTB1/SCM3 region led to loss-of-function, normal-like, and gain-of-function plant types, based on OsTB1 expression and stem cross-section area
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	inflorescence	Production of novel beneficial alleles of a rice yield-related QTL by CRISPR/Cas9.	 One gain-of-function allele recapitulated a previously described beneficial allele of OsTB1 carrying a TGTG insertion in the 5' region of OsTB1 and enhanced OsTB1 expression at the inflorescence formation stage
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	lodging	Production of novel beneficial alleles of a rice yield-related QTL by CRISPR/Cas9.	 Our study of a locus involved in resistance to lodging demonstrated that saturation editing of the qSCSA3-1/OsTB1/SCM3 region led to loss-of-function, normal-like, and gain-of-function plant types, based on OsTB1 expression and stem cross-section area
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tillering	In-frame mutation in rice TEOSINTE BRANCHED1 (OsTB1) improves productivity under phosphorus deficiency.	 We propose that mildly enhanced tillering by in-frame mutation of OsTB1 can improve grain yield under low phosphorus conditions
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	grain	In-frame mutation in rice TEOSINTE BRANCHED1 (OsTB1) improves productivity under phosphorus deficiency.	 We propose that mildly enhanced tillering by in-frame mutation of OsTB1 can improve grain yield under low phosphorus conditions
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller	In-frame mutation in rice TEOSINTE BRANCHED1 (OsTB1) improves productivity under phosphorus deficiency.	 In contrast, in-frame mutations in OsTB1 had the effect of slightly increasing tiller numbers, and the in-frame mutants had 40% more panicles than non-mutated plants
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	grain yield	In-frame mutation in rice TEOSINTE BRANCHED1 (OsTB1) improves productivity under phosphorus deficiency.	 We propose that mildly enhanced tillering by in-frame mutation of OsTB1 can improve grain yield under low phosphorus conditions
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	yield	In-frame mutation in rice TEOSINTE BRANCHED1 (OsTB1) improves productivity under phosphorus deficiency.	 We propose that mildly enhanced tillering by in-frame mutation of OsTB1 can improve grain yield under low phosphorus conditions
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller number	In-frame mutation in rice TEOSINTE BRANCHED1 (OsTB1) improves productivity under phosphorus deficiency.	 In contrast, in-frame mutations in OsTB1 had the effect of slightly increasing tiller numbers, and the in-frame mutants had 40% more panicles than non-mutated plants
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	phosphorus	In-frame mutation in rice TEOSINTE BRANCHED1 (OsTB1) improves productivity under phosphorus deficiency.	 We propose that mildly enhanced tillering by in-frame mutation of OsTB1 can improve grain yield under low phosphorus conditions
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	panicle	MORE PANICLES 3, a natural allele of OsTB1/FC1, impacts rice yield in paddy fields at elevated CO(2) levels.	 Our findings show that the moderately increased panicle number combined with large-sized panicles using MP3 could be a novel IPA and contribute to an increase in rice production under climate change with rising atmospheric CO(2) levels
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller	MORE PANICLES 3, a natural allele of OsTB1/FC1, impacts rice yield in paddy fields at elevated CO(2) levels.	 MP3 is a natural allele of OsTB1/FC1, previously reported as a negative regulator of tiller bud outgrowth
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	domestication	MORE PANICLES 3, a natural allele of OsTB1/FC1, impacts rice yield in paddy fields at elevated CO(2) levels.	 No selective sweep at MP3 in either the temperate japonica or indica subgroups suggested that MP3 has not been involved and utilized in artificial selection during domestication or breeding
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	breeding	MORE PANICLES 3, a natural allele of OsTB1/FC1, impacts rice yield in paddy fields at elevated CO(2) levels.	 No selective sweep at MP3 in either the temperate japonica or indica subgroups suggested that MP3 has not been involved and utilized in artificial selection during domestication or breeding
OsTB1|FC1|SCM3|MP3	Os03g0706500	LOC_Os03g49880	tiller bud outgrowth	MORE PANICLES 3, a natural allele of OsTB1/FC1, impacts rice yield in paddy fields at elevated CO(2) levels.	 MP3 is a natural allele of OsTB1/FC1, previously reported as a negative regulator of tiller bud outgrowth
OsTBL1	Os12g0106300	LOC_Os12g01560	growth	Two Trichome Birefringence-like proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.	ostbl1 and ostbl2 single mutant and the tbl1 tbl2 double mutant displayed a stunted growth phenotype with varied degree of dwarfism
OsTBL1	Os12g0106300	LOC_Os12g01560	resistance	Two Trichome Birefringence-like proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.	In addition, ostbl1 and tbl1 tbl2 displayed susceptibility to rice blight disease, indicating that this xylan modification is required for pathogen resistance
OsTBL1	Os12g0106300	LOC_Os12g01560	blight	Two Trichome Birefringence-like proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.	In addition, ostbl1 and tbl1 tbl2 displayed susceptibility to rice blight disease, indicating that this xylan modification is required for pathogen resistance
OsTBL1	Os12g0106300	LOC_Os12g01560	pathogen	Two Trichome Birefringence-like proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.	In addition, ostbl1 and tbl1 tbl2 displayed susceptibility to rice blight disease, indicating that this xylan modification is required for pathogen resistance
OsTBL1	Os12g0106300	LOC_Os12g01560	pathogen resistance	Two Trichome Birefringence-like proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.	In addition, ostbl1 and tbl1 tbl2 displayed susceptibility to rice blight disease, indicating that this xylan modification is required for pathogen resistance
OsTBL1	Os12g0106300	LOC_Os12g01560	blight disease	Two Trichome Birefringence-like proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.	In addition, ostbl1 and tbl1 tbl2 displayed susceptibility to rice blight disease, indicating that this xylan modification is required for pathogen resistance
OsTBL2	Os11g0107000	LOC_Os11g01570	growth	Two Trichome Birefringence-like proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.	ostbl1 and ostbl2 single mutant and the tbl1 tbl2 double mutant displayed a stunted growth phenotype with varied degree of dwarfism
OsTBP2	Os03g0657000	LOC_Os03g45410	transcription factor	Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System	We also demonstrate a physical interaction between OsTBP2 and RF2a, a rice bZIP transcription factor that bound to the box II cis element of the promoter of Rice tungro bacilliform virus, resulting in enhanced transcription from the viral promoter
OsTBP2	Os03g0657000	LOC_Os03g45410	transcription factor	Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System	We conclude that OsTBP2 undergoes promoter-specific functional interactions with both the basal transcription factor OsTFIIB and the accessory transcription factor RF2a
OsTBP2.1	Os12g0580300	LOC_Os12g39070	grain yield	OsTBP2.1, a TATA-Binding Protein, Alters the Ratio of OsNRT2.3b to OsNRT2.3a and Improves Rice Grain Yield	OsTBP2.1, a TATA-Binding Protein, Alters the Ratio of OsNRT2.3b to OsNRT2.3a and Improves Rice Grain Yield
OsTBP2.1	Os12g0580300	LOC_Os12g39070	yield	OsTBP2.1, a TATA-Binding Protein, Alters the Ratio of OsNRT2.3b to OsNRT2.3a and Improves Rice Grain Yield	OsTBP2.1, a TATA-Binding Protein, Alters the Ratio of OsNRT2.3b to OsNRT2.3a and Improves Rice Grain Yield
OsTBP2.2	Os10g0432300	LOC_Os10g29660	drought	Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice.	Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice.
OsTBP2.2	Os10g0432300	LOC_Os10g29660	stress	Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice.	Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice.
OsTBP2.2	Os10g0432300	LOC_Os10g29660	drought stress	Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice.	Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice.
OsTBP2.2	Os10g0432300	LOC_Os10g29660	drought stress	Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice.	Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice.
OsTCL1	Os01g0619100	None	transcription factor	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.
OsTCL1	Os01g0619100	None	transcription factor	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	Consistent with these observations, expression levels of GL2, R2R3 MYB transcription factor gene GLABRA1 (GL1) and several R3 MYB genes were greatly reduced, indicating that OsTCL1 is functional R3 MYB
OsTCL1	Os01g0619100	None	root	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.
OsTCL1	Os01g0619100	None	root	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	Expressing OsTCL1 in Arabidopsis inhibited trichome formation and promoted root hair formation, and OsTCL1 interacted with GL3 when tested in Arabidopsis protoplasts
OsTCL1	Os01g0619100	None	root	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	However, trichome and root hair formation in transgenic rice plants overexpressing OsTCL1 remained largely unchanged, and elevated expression of OsGL2 was observed in the transgenic rice plants, indicating that rice may use different mechanisms to regulate trichome formation
OsTCL1	Os01g0619100	None	root hair	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.
OsTCL1	Os01g0619100	None	root hair	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	Expressing OsTCL1 in Arabidopsis inhibited trichome formation and promoted root hair formation, and OsTCL1 interacted with GL3 when tested in Arabidopsis protoplasts
OsTCL1	Os01g0619100	None	root hair	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	However, trichome and root hair formation in transgenic rice plants overexpressing OsTCL1 remained largely unchanged, and elevated expression of OsGL2 was observed in the transgenic rice plants, indicating that rice may use different mechanisms to regulate trichome formation
OsTCP19	Os06g0226700	LOC_Os06g12230	root	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	Overexpression of OsTCP19 in Arabidopsis caused upregulation of IAA3, ABI3 and ABI4 and downregulation of LOX2, and led to developmental abnormalities like fewer lateral root formation
OsTCP19	Os06g0226700	LOC_Os06g12230	abiotic stress	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.
OsTCP19	Os06g0226700	LOC_Os06g12230	stress	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.
OsTCP19	Os06g0226700	LOC_Os06g12230	stress	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	Thus, OsTCP19 appears to be an important node in cell signaling which crosslinks stress and developmental pathways
OsTCP19	Os06g0226700	LOC_Os06g12230	lateral root	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	Overexpression of OsTCP19 in Arabidopsis caused upregulation of IAA3, ABI3 and ABI4 and downregulation of LOX2, and led to developmental abnormalities like fewer lateral root formation
OsTCP19	Os06g0226700	LOC_Os06g12230	abscisic acid	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	Interactions of OsTCP19 with OsABI4 and OsULT1 further suggest its function in modulation of abscisic acid pathways and chromatin structure
OsTCP19	Os06g0226700	LOC_Os06g12230	biotic stress	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.
OsTCP19	Os06g0226700	LOC_Os06g12230	node	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	Thus, OsTCP19 appears to be an important node in cell signaling which crosslinks stress and developmental pathways
OsTCP19	Os06g0226700	LOC_Os06g12230	nitrogen	Genomic basis of geographical adaptation to soil nitrogen in rice	Using a panel of diverse rice germplasm collected from different ecogeographical regions, we performed a genome-wide association study on the tillering response to nitrogen-the trait that is most closely correlated with nitrogen-use efficiency in rice-and identified OsTCP19 as a modulator of this tillering response through its transcriptional response to nitrogen and its targeting to the tiller-promoting gene DWARF AND LOW-TILLERING (DLT)3,4
OsTCP19	Os06g0226700	LOC_Os06g12230	nitrogen	Genomic basis of geographical adaptation to soil nitrogen in rice	A 29-bp insertion and/or deletion in the OsTCP19 promoter confers a differential transcriptional response and variation in the tillering response to nitrogen among rice varieties
OsTCP19	Os06g0226700	LOC_Os06g12230	nitrogen	Genomic basis of geographical adaptation to soil nitrogen in rice	The allele of OsTCP19 associated with a high tillering response to nitrogen is prevalent in wild rice populations, but has largely been lost in modern cultivars: this loss correlates with increased local soil nitrogen content, which suggests that it might have contributed to geographical adaptation in rice
OsTCP19	Os06g0226700	LOC_Os06g12230	tillering	Genomic basis of geographical adaptation to soil nitrogen in rice	Using a panel of diverse rice germplasm collected from different ecogeographical regions, we performed a genome-wide association study on the tillering response to nitrogen-the trait that is most closely correlated with nitrogen-use efficiency in rice-and identified OsTCP19 as a modulator of this tillering response through its transcriptional response to nitrogen and its targeting to the tiller-promoting gene DWARF AND LOW-TILLERING (DLT)3,4
OsTCP19	Os06g0226700	LOC_Os06g12230	tillering	Genomic basis of geographical adaptation to soil nitrogen in rice	A 29-bp insertion and/or deletion in the OsTCP19 promoter confers a differential transcriptional response and variation in the tillering response to nitrogen among rice varieties
OsTCP19	Os06g0226700	LOC_Os06g12230	tillering	Genomic basis of geographical adaptation to soil nitrogen in rice	The allele of OsTCP19 associated with a high tillering response to nitrogen is prevalent in wild rice populations, but has largely been lost in modern cultivars: this loss correlates with increased local soil nitrogen content, which suggests that it might have contributed to geographical adaptation in rice
OsTCP19	Os06g0226700	LOC_Os06g12230	dwarf	Genomic basis of geographical adaptation to soil nitrogen in rice	Using a panel of diverse rice germplasm collected from different ecogeographical regions, we performed a genome-wide association study on the tillering response to nitrogen-the trait that is most closely correlated with nitrogen-use efficiency in rice-and identified OsTCP19 as a modulator of this tillering response through its transcriptional response to nitrogen and its targeting to the tiller-promoting gene DWARF AND LOW-TILLERING (DLT)3,4
OsTCP21	Os07g0152000	LOC_Os07g05720	transcription factor	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	oryzae strain Guy11 specifically induced rice miR319 expression, and consequently suppressed its target gene, OsTCP21 (TEOSINTE BRANCHED/CYCLOIDEA/PCF), which encodes a transcription factor
OsTCP21	Os07g0152000	LOC_Os07g05720	defense	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	By using miR319b-OE and OsTCP21-Res (resistant to miR319-mediated silencing) transgenic rice, we found that OsTCP21 is a positive regulator of rice defense response against the blast disease
OsTCP21	Os07g0152000	LOC_Os07g05720	defense response	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	By using miR319b-OE and OsTCP21-Res (resistant to miR319-mediated silencing) transgenic rice, we found that OsTCP21 is a positive regulator of rice defense response against the blast disease
OsTCP21	Os07g0152000	LOC_Os07g05720	disease	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	By using miR319b-OE and OsTCP21-Res (resistant to miR319-mediated silencing) transgenic rice, we found that OsTCP21 is a positive regulator of rice defense response against the blast disease
OsTCP21	Os07g0152000	LOC_Os07g05720	blast	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	By using miR319b-OE and OsTCP21-Res (resistant to miR319-mediated silencing) transgenic rice, we found that OsTCP21 is a positive regulator of rice defense response against the blast disease
OsTCP21	Os07g0152000	LOC_Os07g05720	blast disease	Magnaporthe oryzae defeats rice defense by inducing miR319b and suppressing Jasmonic acid signaling.	By using miR319b-OE and OsTCP21-Res (resistant to miR319-mediated silencing) transgenic rice, we found that OsTCP21 is a positive regulator of rice defense response against the blast disease
OsTCP21	Os07g0152000	LOC_Os07g05720	tillering	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice
OsTCP21	Os07g0152000	LOC_Os07g05720	tillering	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	These data suggest that miR319 regulates rice tiller bud development and tillering through targeting OsTCP21 and OsGAmyb
OsTCP21	Os07g0152000	LOC_Os07g05720	development	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	These data suggest that miR319 regulates rice tiller bud development and tillering through targeting OsTCP21 and OsGAmyb
OsTCP21	Os07g0152000	LOC_Os07g05720	grain	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice
OsTCP21	Os07g0152000	LOC_Os07g05720	grain	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsTCP21	Os07g0152000	LOC_Os07g05720	grain	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Taken together, our findings indicate that miR319s negatively affect tiller number and grain yield by targeting OsTCP21 and OsGAmyb, revealing a novel function for miR319 in rice
OsTCP21	Os07g0152000	LOC_Os07g05720	tiller	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Moreover, OsTCP21 and OsGAmyb overexpression lines and STTM319 had increased tiller bud length and biomass, whereas both were decreased in OsTCP21 and OsGAmyb knockout lines and OE319a
OsTCP21	Os07g0152000	LOC_Os07g05720	tiller	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	These data suggest that miR319 regulates rice tiller bud development and tillering through targeting OsTCP21 and OsGAmyb
OsTCP21	Os07g0152000	LOC_Os07g05720	tiller	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsTCP21	Os07g0152000	LOC_Os07g05720	tiller	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Taken together, our findings indicate that miR319s negatively affect tiller number and grain yield by targeting OsTCP21 and OsGAmyb, revealing a novel function for miR319 in rice
OsTCP21	Os07g0152000	LOC_Os07g05720	grain yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice
OsTCP21	Os07g0152000	LOC_Os07g05720	grain yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsTCP21	Os07g0152000	LOC_Os07g05720	grain yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Taken together, our findings indicate that miR319s negatively affect tiller number and grain yield by targeting OsTCP21 and OsGAmyb, revealing a novel function for miR319 in rice
OsTCP21	Os07g0152000	LOC_Os07g05720	yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice
OsTCP21	Os07g0152000	LOC_Os07g05720	yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsTCP21	Os07g0152000	LOC_Os07g05720	yield	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Taken together, our findings indicate that miR319s negatively affect tiller number and grain yield by targeting OsTCP21 and OsGAmyb, revealing a novel function for miR319 in rice
OsTCP21	Os07g0152000	LOC_Os07g05720	tiller number	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb
OsTCP21	Os07g0152000	LOC_Os07g05720	tiller number	MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice	Taken together, our findings indicate that miR319s negatively affect tiller number and grain yield by targeting OsTCP21 and OsGAmyb, revealing a novel function for miR319 in rice
OsTCTP	Os11g0660500	LOC_Os11g43900	tolerance	OsTCTP, encoding a translationally controlled tumor protein, plays an important role in mercury tolerance in rice.	Overexpression of OsTCTP potentiated the activities of several antioxidant enzymes, reduced the Hg-induced H2O2 levels, and promoted Hg tolerance in rice, whereas knockdown of OsTCTP produced opposite effects
OsTCTP	Os11g0660500	LOC_Os11g43900	tolerance	OsTCTP, encoding a translationally controlled tumor protein, plays an important role in mercury tolerance in rice.	Our results suggest that OsTCTP is capable of decreasing the Hg-induced reactive oxygen species (ROS), therefore, reducing the damage of ROS and enhancing the tolerance of rice plants to Hg stress
OsTCTP	Os11g0660500	LOC_Os11g43900	stress	OsTCTP, encoding a translationally controlled tumor protein, plays an important role in mercury tolerance in rice.	Our results suggest that OsTCTP is capable of decreasing the Hg-induced reactive oxygen species (ROS), therefore, reducing the damage of ROS and enhancing the tolerance of rice plants to Hg stress
OsTCTP	Os11g0660500	LOC_Os11g43900	abscisic acid	OsTCTP, encoding a translationally controlled tumor protein, plays an important role in mercury tolerance in rice.	OsTCTP was induced by mercuric chloride, cupric sulfate, abscisic acid, and hydrogen peroxide at the protein level in a time-dependent manner
OsTCTP	Os11g0660500	LOC_Os11g43900	nucleus	OsTCTP, encoding a translationally controlled tumor protein, plays an important role in mercury tolerance in rice.	OsTCTP was found to localize both the cytosol and the nucleus
OsTCTP	Os11g0660500	LOC_Os11g43900	reactive oxygen species	OsTCTP, encoding a translationally controlled tumor protein, plays an important role in mercury tolerance in rice.	Our results suggest that OsTCTP is capable of decreasing the Hg-induced reactive oxygen species (ROS), therefore, reducing the damage of ROS and enhancing the tolerance of rice plants to Hg stress
OsTDF1	Os03g0296000	LOC_Os03g18480	development	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis
OsTDF1	Os03g0296000	LOC_Os03g18480	development	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis	The qRT-PCR analysis revealed that OsTDF1 acts downstream of UDT1 and upstream of TDR, EAT1, OsMYB103 and PTC1 in rice, suggesting that the genetic pathway for tapetum development is generally conserved between rice and Arabidopsis
OsTDF1	Os03g0296000	LOC_Os03g18480	cell death	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis	Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling assays revealed OsTDF1 acts as an essential regulator for tapetum programmed cell death
OsTDF1	Os03g0296000	LOC_Os03g18480	tapetum	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis	Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling assays revealed OsTDF1 acts as an essential regulator for tapetum programmed cell death
OsTDF1	Os03g0296000	LOC_Os03g18480	tapetum	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis	The qRT-PCR analysis revealed that OsTDF1 acts downstream of UDT1 and upstream of TDR, EAT1, OsMYB103 and PTC1 in rice, suggesting that the genetic pathway for tapetum development is generally conserved between rice and Arabidopsis
OsTDF1	Os03g0296000	LOC_Os03g18480	tapetal	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis
OsTDF1	Os03g0296000	LOC_Os03g18480	tapetal	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis	RT-PCR and in situ hybridization show that OsTDF1 is specifically expressed in tapetal cells of rice anthers
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	anther	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther	We report here that the gene MICROSPORELESS2 (MIL2) regulates early anther cell differentiation in rice (Oryza sativa)
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	anther	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther	The anthers of mil2 mutants were characterized using molecular markers and cytological examination
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	anther	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther	However, mil2 anthers display phenotypes different from those of tpd1 mutants, with only two layers of anther wall cells formed
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	anther	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther	Our results demonstrate that MIL2 is responsible for the differentiation of primary parietal cells into secondary parietal cells in rice anthers, and suggest that rice and Arabidopsis anthers might share similar regulators in anther patterning, but divergent mechanisms are employed in these processes
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	anther	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	microspore	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther	We report here that the gene MICROSPORELESS2 (MIL2) regulates early anther cell differentiation in rice (Oryza sativa)
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	microspore	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	meiosis	OsTDL1A binds to the LRR domain of rice receptor kinase MSP1, and is required to limit sporocyte numbers	Both are co-expressed with MSP1 in anthers during meiosis, but only OsTDL1A and MSP1 are co-expressed in the ovule
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	anther	OsTDL1A binds to the LRR domain of rice receptor kinase MSP1, and is required to limit sporocyte numbers	Both are co-expressed with MSP1 in anthers during meiosis, but only OsTDL1A and MSP1 are co-expressed in the ovule
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	anther	OsTDL1A binds to the LRR domain of rice receptor kinase MSP1, and is required to limit sporocyte numbers	When driven by the maize Ubiquitin1 promoter, RNA interference against OsTDL1A phenocopies msp1 in the ovule but not in the anther
OsTDL1A|MIL2	Os12g0472500	LOC_Os12g28750	tapetum	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther	MIL2 encodes the rice homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein
OsTEF1	Os02g0134300	LOC_Os02g04160	growth	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	A T-DNA insertional mutant OsTEF1 of rice gives 60-80% reduced tillering, retarded growth of seminal roots, and sensitivity to salt stress compared to wild type Basmati 370
OsTEF1	Os02g0134300	LOC_Os02g04160	tiller	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	A T-DNA insertional mutant OsTEF1 of rice gives 60-80% reduced tillering, retarded growth of seminal roots, and sensitivity to salt stress compared to wild type Basmati 370
OsTEF1	Os02g0134300	LOC_Os02g04160	tiller	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	Detailed transcriptomic profiling of OsTEF1 revealed that mutation in the transcription elongation factor differentially regulates the expression of more than 100 genes with known function and finely regulates tillering process in rice by inducing the expression of cytochrome P450
OsTEF1	Os02g0134300	LOC_Os02g04160	tiller	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors
OsTEF1	Os02g0134300	LOC_Os02g04160	salt stress	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	A T-DNA insertional mutant OsTEF1 of rice gives 60-80% reduced tillering, retarded growth of seminal roots, and sensitivity to salt stress compared to wild type Basmati 370
OsTEF1	Os02g0134300	LOC_Os02g04160	tillering	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	A T-DNA insertional mutant OsTEF1 of rice gives 60-80% reduced tillering, retarded growth of seminal roots, and sensitivity to salt stress compared to wild type Basmati 370
OsTEF1	Os02g0134300	LOC_Os02g04160	tillering	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	Detailed transcriptomic profiling of OsTEF1 revealed that mutation in the transcription elongation factor differentially regulates the expression of more than 100 genes with known function and finely regulates tillering process in rice by inducing the expression of cytochrome P450
OsTEF1	Os02g0134300	LOC_Os02g04160	tillering	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors
OsTEF1	Os02g0134300	LOC_Os02g04160	root	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	A T-DNA insertional mutant OsTEF1 of rice gives 60-80% reduced tillering, retarded growth of seminal roots, and sensitivity to salt stress compared to wild type Basmati 370
OsTEF1	Os02g0134300	LOC_Os02g04160	salt	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	A T-DNA insertional mutant OsTEF1 of rice gives 60-80% reduced tillering, retarded growth of seminal roots, and sensitivity to salt stress compared to wild type Basmati 370
OsTEF1	Os02g0134300	LOC_Os02g04160	transcription factor	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors
OSTF1	Os01g0788800	LOC_Os01g57890	grain	OSTF1: A HD-GL2 Family Homeobox Gene is Developmentally Regulated During Early Embryogenesis in Rice	In situ hybridization analysis on developing grains revealed that OSTF1 was strongly and uniformly expressed in the embryo at the globular stage and preferentially localized to the protoderm at 3~6 d after pollination
OSTF1	Os01g0788800	LOC_Os01g57890	transcription factor	OSTF1: A HD-GL2 Family Homeobox Gene is Developmentally Regulated During Early Embryogenesis in Rice	In this study, a gene designated OSTF1 (Oryza sativa transcription factor 1) encoding a homeodomain protein in rice was isolated and characterized
OsTF1L	Os08g0292000	LOC_Os08g19590	transcription factor	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Here, we report that the rice (Oryza sativa) homeodomain-leucine zipper transcription factor gene, OsTF1L (Oryza sativa transcription factor 1-like), is a key regulator of drought tolerance mechanisms
OsTF1L	Os08g0292000	LOC_Os08g19590	growth	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Overexpression of the OsTF1L in rice significantly increased drought tolerance at the vegetative stages of growth and promoted both effective photosynthesis and a reduction in the water loss rate under drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	growth	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Importantly, the OsTF1L overexpressing plants showed a higher drought tolerance at the reproductive stage of growth with a higher grain yield than non-transgenic controls under field-drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	grain	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Importantly, the OsTF1L overexpressing plants showed a higher drought tolerance at the reproductive stage of growth with a higher grain yield than non-transgenic controls under field-drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	ATPase	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	More importantly, OsTF1L directly bound to the promoters of lignin biosynthesis and drought-related genes involving poxN/PRX38, Nodulin protein, DHHC4, CASPL5B1 and AAA-type ATPase
OsTF1L	Os08g0292000	LOC_Os08g19590	drought	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Here, we report that the rice (Oryza sativa) homeodomain-leucine zipper transcription factor gene, OsTF1L (Oryza sativa transcription factor 1-like), is a key regulator of drought tolerance mechanisms
OsTF1L	Os08g0292000	LOC_Os08g19590	drought	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Overexpression of the OsTF1L in rice significantly increased drought tolerance at the vegetative stages of growth and promoted both effective photosynthesis and a reduction in the water loss rate under drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	drought	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Importantly, the OsTF1L overexpressing plants showed a higher drought tolerance at the reproductive stage of growth with a higher grain yield than non-transgenic controls under field-drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	drought	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	In addition, OsTF1L overexpression enhances stomatal closure under drought conditions resulted in drought tolerance
OsTF1L	Os08g0292000	LOC_Os08g19590	drought	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Collectively, our results provide a new insight into the role of OsTF1L in enhancing drought tolerance through lignin biosynthesis and stomatal closure in rice
OsTF1L	Os08g0292000	LOC_Os08g19590	photosynthesis	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Overexpression of the OsTF1L in rice significantly increased drought tolerance at the vegetative stages of growth and promoted both effective photosynthesis and a reduction in the water loss rate under drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Here, we report that the rice (Oryza sativa) homeodomain-leucine zipper transcription factor gene, OsTF1L (Oryza sativa transcription factor 1-like), is a key regulator of drought tolerance mechanisms
OsTF1L	Os08g0292000	LOC_Os08g19590	tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Overexpression of the OsTF1L in rice significantly increased drought tolerance at the vegetative stages of growth and promoted both effective photosynthesis and a reduction in the water loss rate under drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Importantly, the OsTF1L overexpressing plants showed a higher drought tolerance at the reproductive stage of growth with a higher grain yield than non-transgenic controls under field-drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	In addition, OsTF1L overexpression enhances stomatal closure under drought conditions resulted in drought tolerance
OsTF1L	Os08g0292000	LOC_Os08g19590	tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Collectively, our results provide a new insight into the role of OsTF1L in enhancing drought tolerance through lignin biosynthesis and stomatal closure in rice
OsTF1L	Os08g0292000	LOC_Os08g19590	grain yield	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Importantly, the OsTF1L overexpressing plants showed a higher drought tolerance at the reproductive stage of growth with a higher grain yield than non-transgenic controls under field-drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	yield	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Importantly, the OsTF1L overexpressing plants showed a higher drought tolerance at the reproductive stage of growth with a higher grain yield than non-transgenic controls under field-drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	vegetative	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Overexpression of the OsTF1L in rice significantly increased drought tolerance at the vegetative stages of growth and promoted both effective photosynthesis and a reduction in the water loss rate under drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	drought tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Here, we report that the rice (Oryza sativa) homeodomain-leucine zipper transcription factor gene, OsTF1L (Oryza sativa transcription factor 1-like), is a key regulator of drought tolerance mechanisms
OsTF1L	Os08g0292000	LOC_Os08g19590	drought tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Overexpression of the OsTF1L in rice significantly increased drought tolerance at the vegetative stages of growth and promoted both effective photosynthesis and a reduction in the water loss rate under drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	drought tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Importantly, the OsTF1L overexpressing plants showed a higher drought tolerance at the reproductive stage of growth with a higher grain yield than non-transgenic controls under field-drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	drought tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	In addition, OsTF1L overexpression enhances stomatal closure under drought conditions resulted in drought tolerance
OsTF1L	Os08g0292000	LOC_Os08g19590	drought tolerance	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Collectively, our results provide a new insight into the role of OsTF1L in enhancing drought tolerance through lignin biosynthesis and stomatal closure in rice
OsTF1L	Os08g0292000	LOC_Os08g19590	reproductive	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Importantly, the OsTF1L overexpressing plants showed a higher drought tolerance at the reproductive stage of growth with a higher grain yield than non-transgenic controls under field-drought conditions
OsTF1L	Os08g0292000	LOC_Os08g19590	stomatal	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Genome-wide analysis of OsTF1L overexpression plants revealed up-regulation of drought-inducible, stomatal movement and lignin biosynthetic genes
OsTF1L	Os08g0292000	LOC_Os08g19590	stomatal	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	In addition, OsTF1L overexpression enhances stomatal closure under drought conditions resulted in drought tolerance
OsTF1L	Os08g0292000	LOC_Os08g19590	stomatal	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Collectively, our results provide a new insight into the role of OsTF1L in enhancing drought tolerance through lignin biosynthesis and stomatal closure in rice
OsTF1L	Os08g0292000	LOC_Os08g19590	lignin	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Genome-wide analysis of OsTF1L overexpression plants revealed up-regulation of drought-inducible, stomatal movement and lignin biosynthetic genes
OsTF1L	Os08g0292000	LOC_Os08g19590	lignin	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Overexpression of OsTF1L promoted accumulation of lignin in shoots, whereas the RNAi lines showed opposite patterns of lignin accumulation
OsTF1L	Os08g0292000	LOC_Os08g19590	lignin	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	More importantly, OsTF1L directly bound to the promoters of lignin biosynthesis and drought-related genes involving poxN/PRX38, Nodulin protein, DHHC4, CASPL5B1 and AAA-type ATPase
OsTF1L	Os08g0292000	LOC_Os08g19590	lignin	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Collectively, our results provide a new insight into the role of OsTF1L in enhancing drought tolerance through lignin biosynthesis and stomatal closure in rice
OsTF1L	Os08g0292000	LOC_Os08g19590	lignin biosynthesis	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	More importantly, OsTF1L directly bound to the promoters of lignin biosynthesis and drought-related genes involving poxN/PRX38, Nodulin protein, DHHC4, CASPL5B1 and AAA-type ATPase
OsTF1L	Os08g0292000	LOC_Os08g19590	lignin biosynthesis	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Collectively, our results provide a new insight into the role of OsTF1L in enhancing drought tolerance through lignin biosynthesis and stomatal closure in rice
OsTF1L	Os08g0292000	LOC_Os08g19590	water loss	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Overexpression of the OsTF1L in rice significantly increased drought tolerance at the vegetative stages of growth and promoted both effective photosynthesis and a reduction in the water loss rate under drought conditions
OsTFIIB	Os09g0534800	LOC_Os09g36440	transcription factor	Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System	We conclude that OsTBP2 undergoes promoter-specific functional interactions with both the basal transcription factor OsTFIIB and the accessory transcription factor RF2a
OsTFX1|OsbZIP73	Os09g0474000	LOC_Os09g29820	bacterial blight	Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIA 1 and OsTFX1 during bacterial blight of rice	Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIA 1 and OsTFX1 during bacterial blight of rice
OsTFX1|OsbZIP73	Os09g0474000	LOC_Os09g29820	transcription factor	Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIA 1 and OsTFX1 during bacterial blight of rice	Here, we show that PXO99(A) affects the expression of two additional genes in a type III secretion system-dependent manner, one encoding a bZIP transcription factor (OsTFX1) and the other the small subunit of the transcription factor IIA located on chromosome 1 (OsTFIIAgamma1)
OsTFX1|OsbZIP73	Os09g0474000	LOC_Os09g29820	blight	Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIA 1 and OsTFX1 during bacterial blight of rice	Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIA 1 and OsTFX1 during bacterial blight of rice
OsTGA10	Os09g0489500	LOC_Os09g31390	anther	Regulatory Role of OsTDL1A-MSP1 Signaling in Specifying Anther Cell Identity in Rice.	OsTGA10 was shown to interact with OsGrx_I1, suggesting that OsTDL1A-MSP1 signaling specifies anther cell fate directly or indirectly affecting redox status
OsTGA10	Os09g0489500	LOC_Os09g31390	transcription factor	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.
OsTGA10	Os09g0489500	LOC_Os09g31390	sterility	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	OsTGA10 was preferentially expressed during stamen development, and mutation of OsTGA10 resulted in male sterility
OsTGA10	Os09g0489500	LOC_Os09g31390	development	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Our findings suggest that OsTGA10 plays a mediator role between organ identity determination and tapetum development in rice stamen development, between tapetum development and microspore development, and between various regulatory components required for tapetum development
OsTGA10	Os09g0489500	LOC_Os09g31390	development	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Furthermore, the defective endothecium in ostga10 implies that cell wall thickening of endothecium is dependent on tapetum development
OsTGA10	Os09g0489500	LOC_Os09g31390	stamen	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	OsTGA10 was preferentially expressed during stamen development, and mutation of OsTGA10 resulted in male sterility
OsTGA10	Os09g0489500	LOC_Os09g31390	stamen	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Our findings suggest that OsTGA10 plays a mediator role between organ identity determination and tapetum development in rice stamen development, between tapetum development and microspore development, and between various regulatory components required for tapetum development
OsTGA10	Os09g0489500	LOC_Os09g31390	cell wall	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	In addition, in ostga10 stamens, the hallmark cell wall thickening of the endothecium was defective
OsTGA10	Os09g0489500	LOC_Os09g31390	cell wall	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Furthermore, the defective endothecium in ostga10 implies that cell wall thickening of endothecium is dependent on tapetum development
OsTGA10	Os09g0489500	LOC_Os09g31390	tapetum	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.
OsTGA10	Os09g0489500	LOC_Os09g31390	tapetum	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	OsTGA10 was required for tapetum development, and functioned by interacting with known tapetum genes
OsTGA10	Os09g0489500	LOC_Os09g31390	tapetum	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Our findings suggest that OsTGA10 plays a mediator role between organ identity determination and tapetum development in rice stamen development, between tapetum development and microspore development, and between various regulatory components required for tapetum development
OsTGA10	Os09g0489500	LOC_Os09g31390	tapetum	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Furthermore, the defective endothecium in ostga10 implies that cell wall thickening of endothecium is dependent on tapetum development
OsTGA10	Os09g0489500	LOC_Os09g31390	microspore	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Our findings suggest that OsTGA10 plays a mediator role between organ identity determination and tapetum development in rice stamen development, between tapetum development and microspore development, and between various regulatory components required for tapetum development
OsTGA10	Os09g0489500	LOC_Os09g31390	male sterility	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	OsTGA10 was preferentially expressed during stamen development, and mutation of OsTGA10 resulted in male sterility
OsTGA10	Os09g0489500	LOC_Os09g31390	organ identity	Transcription factor OsTGA10 is a target of the MADS protein OsMADS8 and is required for tapetum development.	Our findings suggest that OsTGA10 plays a mediator role between organ identity determination and tapetum development in rice stamen development, between tapetum development and microspore development, and between various regulatory components required for tapetum development
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	leaf	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	leaf	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Here, we examined biological roles of OsTGA2 (grouped into the same subclade as Arabidopsis TGAs) in bacterial leaf blight resistance
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	leaf	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Overexpression of OsTGA2 increased resistance of rice to bacterial leaf blight, although overexpression of OsTGA3 resulted in disease symptoms similar to wild type plant upon Xoo infection
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	leaf	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 These results suggest that OsTGA2 can directly regulate the expression of defense related genes and increase the resistance of rice against bacterial leaf blight disease
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	resistance	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	resistance	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Here, we examined biological roles of OsTGA2 (grouped into the same subclade as Arabidopsis TGAs) in bacterial leaf blight resistance
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	resistance	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Overexpression of OsTGA2 increased resistance of rice to bacterial leaf blight, although overexpression of OsTGA3 resulted in disease symptoms similar to wild type plant upon Xoo infection
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	resistance	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 These results suggest that OsTGA2 can directly regulate the expression of defense related genes and increase the resistance of rice against bacterial leaf blight disease
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	defense	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Overexpression of OsTGA2 enhanced the expression of defense related genes containing TGA binding cis-element in the promoter such as AP2/EREBP 129, ERD1, and HOP1
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	defense	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 These results suggest that OsTGA2 can directly regulate the expression of defense related genes and increase the resistance of rice against bacterial leaf blight disease
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	disease	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	disease	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Overexpression of OsTGA2 increased resistance of rice to bacterial leaf blight, although overexpression of OsTGA3 resulted in disease symptoms similar to wild type plant upon Xoo infection
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	disease	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 These results suggest that OsTGA2 can directly regulate the expression of defense related genes and increase the resistance of rice against bacterial leaf blight disease
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	salicylic acid	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Transcriptional level of OsTGA2 was accumulated after treatment with salicylic acid, methyl jasmonate, and Xathomonas oryzae pv
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	disease resistance	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	R protein	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Results of quadruple 9-mer protein-binding microarray analysis indicated that OsTGA2 could bind to TGACGT DNA sequence
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	 xoo 	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Overexpression of OsTGA2 increased resistance of rice to bacterial leaf blight, although overexpression of OsTGA3 resulted in disease symptoms similar to wild type plant upon Xoo infection
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	blight	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	blight	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Here, we examined biological roles of OsTGA2 (grouped into the same subclade as Arabidopsis TGAs) in bacterial leaf blight resistance
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	blight	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 These results suggest that OsTGA2 can directly regulate the expression of defense related genes and increase the resistance of rice against bacterial leaf blight disease
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	blight disease	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 These results suggest that OsTGA2 can directly regulate the expression of defense related genes and increase the resistance of rice against bacterial leaf blight disease
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	methyl jasmonate	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	 Transcriptional level of OsTGA2 was accumulated after treatment with salicylic acid, methyl jasmonate, and Xathomonas oryzae pv
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	resistance	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	resistance	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 OsSGT1 knockout lines had enhanced resistance to Xoo, and knocking out OsSGT1 in plants overexpressing OsTGAL1 blocked the susceptibility caused by OsTGAL1
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	resistance	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Thus, our results demonstrate that OsTGAL1 negatively regulates resistance to Xoo by its effects on SA metabolism via the activation of OsSGT1, which provides valuable targets for plant breeders in developing new cultivars that are resistant to Xoo
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	disease	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	blight	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	bacterial blight	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	salicylic acid	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	xoo	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Overexpression of OsTGAL1 increased the susceptibility of rice to Xoo
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	xoo	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 The transcript of OsSGT1 was induced by Xoo and this responsive expression was further increased in plants overexpressing OsTGAL1
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	xoo	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Thus, our results demonstrate that OsTGAL1 negatively regulates resistance to Xoo by its effects on SA metabolism via the activation of OsSGT1, which provides valuable targets for plant breeders in developing new cultivars that are resistant to Xoo
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	resistant	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Thus, our results demonstrate that OsTGAL1 negatively regulates resistance to Xoo by its effects on SA metabolism via the activation of OsSGT1, which provides valuable targets for plant breeders in developing new cultivars that are resistant to Xoo
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	sa	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Plants overexpressing OsTGAL1 could affect the expression of many SA signaling-related genes
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	sa	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 OsTGAL1 was able to interact with the promoter of OsSGT1, which encodes a key enzyme for SA metabolism
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	sa	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Thus, our results demonstrate that OsTGAL1 negatively regulates resistance to Xoo by its effects on SA metabolism via the activation of OsSGT1, which provides valuable targets for plant breeders in developing new cultivars that are resistant to Xoo
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	SA	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Plants overexpressing OsTGAL1 could affect the expression of many SA signaling-related genes
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	SA	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 OsTGAL1 was able to interact with the promoter of OsSGT1, which encodes a key enzyme for SA metabolism
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	SA	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Thus, our results demonstrate that OsTGAL1 negatively regulates resistance to Xoo by its effects on SA metabolism via the activation of OsSGT1, which provides valuable targets for plant breeders in developing new cultivars that are resistant to Xoo
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	glucosyltransferase	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	blight disease	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	Xoo	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Overexpression of OsTGAL1 increased the susceptibility of rice to Xoo
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	Xoo	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 The transcript of OsSGT1 was induced by Xoo and this responsive expression was further increased in plants overexpressing OsTGAL1
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	Xoo	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Thus, our results demonstrate that OsTGAL1 negatively regulates resistance to Xoo by its effects on SA metabolism via the activation of OsSGT1, which provides valuable targets for plant breeders in developing new cultivars that are resistant to Xoo
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	bacterial blight disease	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	 xoo 	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 The transcript of OsSGT1 was induced by Xoo and this responsive expression was further increased in plants overexpressing OsTGAL1
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	 xoo 	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Thus, our results demonstrate that OsTGAL1 negatively regulates resistance to Xoo by its effects on SA metabolism via the activation of OsSGT1, which provides valuable targets for plant breeders in developing new cultivars that are resistant to Xoo
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	 sa 	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Plants overexpressing OsTGAL1 could affect the expression of many SA signaling-related genes
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	 sa 	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 OsTGAL1 was able to interact with the promoter of OsSGT1, which encodes a key enzyme for SA metabolism
OsTGA2|OsTGAL1	Os01g0808100	LOC_Os01g59350	 sa 	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	 Thus, our results demonstrate that OsTGAL1 negatively regulates resistance to Xoo by its effects on SA metabolism via the activation of OsSGT1, which provides valuable targets for plant breeders in developing new cultivars that are resistant to Xoo
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	transcription factor	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	transcription factor	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 In response to iron deficiency or OsHRZ knockdown, many genes showed differential regulation between the transcript and protein levels, including the TGA-type basic leucine zipper transcription factor OsbZIP83
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	tolerance	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 Transgenic rice lines overexpressing OsGRX9 and OsbZIP83 showed improved tolerance to iron deficiency
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	salicylic acid	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 OsbZIP83 overexpression lines showed enhanced expression of OsYSL2 and OsNAS3, which are involved in internal iron translocation, in addition to OsGRX9 and genes related to phytoalexin biosynthesis and the salicylic acid pathway
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	iron	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	iron	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 In response to iron deficiency or OsHRZ knockdown, many genes showed differential regulation between the transcript and protein levels, including the TGA-type basic leucine zipper transcription factor OsbZIP83
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	iron	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 Transgenic rice lines overexpressing OsGRX9 and OsbZIP83 showed improved tolerance to iron deficiency
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	iron	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	 OsbZIP83 overexpression lines showed enhanced expression of OsYSL2 and OsNAS3, which are involved in internal iron translocation, in addition to OsGRX9 and genes related to phytoalexin biosynthesis and the salicylic acid pathway
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	Ubiquitin	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.
OsTGA912|OsbZIP83	Os12g0152900	LOC_Os12g05680	N utilization	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.
OsTGAP1|OsbZIP37	Os04g0637000	LOC_Os04g54474	phosphate	OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice	We also found that OsTGAP1 overexpression can influence transcriptional up-regulation of OsDXS3 in the methylerythritol phosphate pathway, eventually leading to inductive production of diterpenoid phytoalexins
OsTGAP1|OsbZIP37	Os04g0637000	LOC_Os04g54474	transcription factor	OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice	Here, we report a chitin oligosaccharide elicitor-inducible basic leucine zipper transcription factor, OsTGAP1, which is essential for momilactone biosynthesis and regulates the expression of the five genes in the cluster
OsTGAP1|OsbZIP37	Os04g0637000	LOC_Os04g54474	transcription factor	OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice	OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice
OsTGAP1|OsbZIP37	Os04g0637000	LOC_Os04g54474	transcription factor	OsTGAP1 is responsible for JA-inducible diterpenoid phytoalexin biosynthesis in rice roots with biological impacts on allelopathic interaction.	The basic leucine zipper transcription factor OsTGAP1 is known to act as a regulator of the coordinated production of DPs in cultured rice cells, but the in planta functions of OsTGAP1 remain largely unknown
OsTGAP1|OsbZIP37	Os04g0637000	LOC_Os04g54474	jasmonic	OsTGAP1 is responsible for JA-inducible diterpenoid phytoalexin biosynthesis in rice roots with biological impacts on allelopathic interaction.	Moreover, the inductive expression of OsTGAP1 under jasmonic acid (JA) treatment was only observed in a root-specific manner consistent with the JA-inductive expressions of DP biosynthetic genes in roots
OsTGAP1|OsbZIP37	Os04g0637000	LOC_Os04g54474	jasmonic acid	OsTGAP1 is responsible for JA-inducible diterpenoid phytoalexin biosynthesis in rice roots with biological impacts on allelopathic interaction.	Moreover, the inductive expression of OsTGAP1 under jasmonic acid (JA) treatment was only observed in a root-specific manner consistent with the JA-inductive expressions of DP biosynthetic genes in roots
OsTH1	Os12g0192500	LOC_Os12g09000	chloroplast	Vitamin B(1) THIAMIN REQUIRING1 synthase mediates the maintenance of chloroplast function by regulating sugar and fatty acid metabolism in rice.	 We also found that alternative splicing and translation allowed OsTH1 to be localized to both chloroplast and cytosol
OsTH1	Os12g0192500	LOC_Os12g09000	growth	Vitamin B(1) THIAMIN REQUIRING1 synthase mediates the maintenance of chloroplast function by regulating sugar and fatty acid metabolism in rice.	 Our study revealed that OsTH1 was an essential enzyme in VB1 biosynthesis and played crucial roles in seedling growth and development by participating in fatty acid and sugar metabolism, providing new perspectives on VB1 function in rice
OsTH1	Os12g0192500	LOC_Os12g09000	development	Vitamin B(1) THIAMIN REQUIRING1 synthase mediates the maintenance of chloroplast function by regulating sugar and fatty acid metabolism in rice.	 Our study revealed that OsTH1 was an essential enzyme in VB1 biosynthesis and played crucial roles in seedling growth and development by participating in fatty acid and sugar metabolism, providing new perspectives on VB1 function in rice
OsTH1	Os12g0192500	LOC_Os12g09000	seedling	Vitamin B(1) THIAMIN REQUIRING1 synthase mediates the maintenance of chloroplast function by regulating sugar and fatty acid metabolism in rice.	 Our study revealed that OsTH1 was an essential enzyme in VB1 biosynthesis and played crucial roles in seedling growth and development by participating in fatty acid and sugar metabolism, providing new perspectives on VB1 function in rice
OsTH1	Os12g0192500	LOC_Os12g09000	sugar	Vitamin B(1) THIAMIN REQUIRING1 synthase mediates the maintenance of chloroplast function by regulating sugar and fatty acid metabolism in rice.	 Our study revealed that OsTH1 was an essential enzyme in VB1 biosynthesis and played crucial roles in seedling growth and development by participating in fatty acid and sugar metabolism, providing new perspectives on VB1 function in rice
OsTH1	Os12g0192500	LOC_Os12g09000	seedling growth	Vitamin B(1) THIAMIN REQUIRING1 synthase mediates the maintenance of chloroplast function by regulating sugar and fatty acid metabolism in rice.	 Our study revealed that OsTH1 was an essential enzyme in VB1 biosynthesis and played crucial roles in seedling growth and development by participating in fatty acid and sugar metabolism, providing new perspectives on VB1 function in rice
OsTH1	Os12g0192500	LOC_Os12g09000	cytosol	Vitamin B(1) THIAMIN REQUIRING1 synthase mediates the maintenance of chloroplast function by regulating sugar and fatty acid metabolism in rice.	 We also found that alternative splicing and translation allowed OsTH1 to be localized to both chloroplast and cytosol
OsTH1	Os12g0192500	LOC_Os12g09000	young panicles	Vitamin B(1) THIAMIN REQUIRING1 synthase mediates the maintenance of chloroplast function by regulating sugar and fatty acid metabolism in rice.	 OsTH1 encoded a phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, and was expressed in various tissues, especially in seedlings, leaves, and young panicles
OsThi9	Os06g0514800	LOC_Os06g32240	tolerance	Plant Defensin-Dissimilar Thionin OsThi9 Alleviates Cadmium Toxicity in Rice Plants and Reduces Cadmium Accumulation in Rice Grains.	 OsThi9 was localized to the cell wall and was shown to bind Cd; these characters help to increase Cd tolerance
OsThi9	Os06g0514800	LOC_Os06g32240	cell wall	Plant Defensin-Dissimilar Thionin OsThi9 Alleviates Cadmium Toxicity in Rice Plants and Reduces Cadmium Accumulation in Rice Grains.	 OsThi9 was localized to the cell wall and was shown to bind Cd; these characters help to increase Cd tolerance
OsThi9	Os06g0514800	LOC_Os06g32240	cell wall	Plant Defensin-Dissimilar Thionin OsThi9 Alleviates Cadmium Toxicity in Rice Plants and Reduces Cadmium Accumulation in Rice Grains.	 In Cd-exposed rice plants, OsThi9 overexpression significantly increased cell wall Cd binding, decreasing upward Cd translocation and subsequent Cd accumulation in shoots and straw, while OsThi9 knockout had inverse effects
OsThi9	Os06g0514800	LOC_Os06g32240	cadmium	Plant Defensin-Dissimilar Thionin OsThi9 Alleviates Cadmium Toxicity in Rice Plants and Reduces Cadmium Accumulation in Rice Grains.	Plant Defensin-Dissimilar Thionin OsThi9 Alleviates Cadmium Toxicity in Rice Plants and Reduces Cadmium Accumulation in Rice Grains.
OsThi9	Os06g0514800	LOC_Os06g32240	cadmium	Plant Defensin-Dissimilar Thionin OsThi9 Alleviates Cadmium Toxicity in Rice Plants and Reduces Cadmium Accumulation in Rice Grains.	 Here, cadmium (Cd)-related functions and mechanisms of the defensin-dissimilar rice thionin OsThi9 were investigated
OsThi9	Os06g0514800	LOC_Os06g32240	cadmium accumulation	Plant Defensin-Dissimilar Thionin OsThi9 Alleviates Cadmium Toxicity in Rice Plants and Reduces Cadmium Accumulation in Rice Grains.	Plant Defensin-Dissimilar Thionin OsThi9 Alleviates Cadmium Toxicity in Rice Plants and Reduces Cadmium Accumulation in Rice Grains.
OsTHION15	Os06g0517700	LOC_Os06g32600	disease	In Silico Analyses of Rice Thionin genes and the Antimicrobial Activity of OsTHION15 against Phytopathogens.	These activities suggest the possible application of OsTHION15 in plant disease control
OsTIF1	Os04g0115500	LOC_Os04g02510	iaa	Auxin apical dominance governed by the OsAsp1-OsTIF1 complex determines distinctive rice caryopses development on different branches	IAA also facilitated OsTIF1 translocation from the endoplasmic reticulum (ER) to the nucleus by releasing the interaction of OsTIF1 with OsAsp1 to regulate caryopses IAA levels via a feedback loop
OsTIF1	Os04g0115500	LOC_Os04g02510	nucleus	Auxin apical dominance governed by the OsAsp1-OsTIF1 complex determines distinctive rice caryopses development on different branches	IAA also facilitated OsTIF1 translocation from the endoplasmic reticulum (ER) to the nucleus by releasing the interaction of OsTIF1 with OsAsp1 to regulate caryopses IAA levels via a feedback loop
OsTIF1	Os04g0115500	LOC_Os04g02510	IAA	Auxin apical dominance governed by the OsAsp1-OsTIF1 complex determines distinctive rice caryopses development on different branches	IAA also facilitated OsTIF1 translocation from the endoplasmic reticulum (ER) to the nucleus by releasing the interaction of OsTIF1 with OsAsp1 to regulate caryopses IAA levels via a feedback loop
OsTIP3;1	Os10g0492600	LOC_Os10g35050	ABA	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.
OsTIP3;1	Os10g0492600	LOC_Os10g35050	ABA	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	Such a stimulatory increase in OsTIP3;1 expression under sugar-starvation is possibly not owing to changes in endogenous ABA content
OsTIP3;1	Os10g0492600	LOC_Os10g35050	ABA	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	The transient expression assay indicated that the 5' flanking region of OsTIP3;1 delivered similar collaborative responsiveness to starvation and ABA, suggesting that this gene promoter could be a good molecular probe to examine the interaction between sugar and ABA signaling pathways
OsTIP3;1	Os10g0492600	LOC_Os10g35050	ABA	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	ABI4 expression was also enhanced by sugars and repressed by ABA, suggesting that reduced ABI4 binding to CE1 in the absence of sugar and presence of ABA could increase ABA-induction of the OsTIP3;1 promoter activity
OsTIP3;1	Os10g0492600	LOC_Os10g35050	ABA	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.
OsTIP3;1	Os10g0492600	LOC_Os10g35050	ABA	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	Such a stimulatory increase in OsTIP3;1 expression under sugar-starvation is possibly not owing to changes in endogenous ABA content
OsTIP3;1	Os10g0492600	LOC_Os10g35050	ABA	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	The transient expression assay indicated that the 5' flanking region of OsTIP3;1 delivered similar collaborative responsiveness to starvation and ABA, suggesting that this gene promoter could be a good molecular probe to examine the interaction between sugar and ABA signaling pathways
OsTIP3;1	Os10g0492600	LOC_Os10g35050	ABA	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	Targeted mutagenesis demonstrated that disruption of ACGT cores decreased the induction of OsTIP3;1 promoter activity under either starvation or ABA, whereas mutation of coupling element 1 (CE1), which is an ABI4 binding site, reversely increased it, suggesting that those two distinct cis-regulatory elements reciprocally regulate the responsiveness of this promoter to both sugar and ABA
OsTIP3;1	Os10g0492600	LOC_Os10g35050	ABA	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	ABI4 expression was also enhanced by sugars and repressed by ABA, suggesting that reduced ABI4 binding to CE1 in the absence of sugar and presence of ABA could increase ABA-induction of the OsTIP3;1 promoter activity
OsTIP3;1	Os10g0492600	LOC_Os10g35050	sugar	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.
OsTIP3;1	Os10g0492600	LOC_Os10g35050	sugar	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	The transient expression assay indicated that the 5' flanking region of OsTIP3;1 delivered similar collaborative responsiveness to starvation and ABA, suggesting that this gene promoter could be a good molecular probe to examine the interaction between sugar and ABA signaling pathways
OsTIP3;1	Os10g0492600	LOC_Os10g35050	sugar	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	Targeted mutagenesis demonstrated that disruption of ACGT cores decreased the induction of OsTIP3;1 promoter activity under either starvation or ABA, whereas mutation of coupling element 1 (CE1), which is an ABI4 binding site, reversely increased it, suggesting that those two distinct cis-regulatory elements reciprocally regulate the responsiveness of this promoter to both sugar and ABA
OsTIP3;1	Os10g0492600	LOC_Os10g35050	sugar	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	ABI4 expression was also enhanced by sugars and repressed by ABA, suggesting that reduced ABI4 binding to CE1 in the absence of sugar and presence of ABA could increase ABA-induction of the OsTIP3;1 promoter activity
OsTIR1	Os05g0150500	LOC_Os05g05800	iaa	Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa)	Moreover, yeast two-hybrid and bimolecular fluorescence complementation assays showed that OsTIR1 and OsAFB2 interact with OsIAA1
OsTIR1	Os05g0150500	LOC_Os05g05800	flower	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice
OsTIR1	Os05g0150500	LOC_Os05g05800	auxin	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	In this study, we verified that two rice auxin receptor gene homologs (OsTIR1 and OsAFB2) could be targeted by OsmiR393 (Os for Oryza sativa)
OsTIR1	Os05g0150500	LOC_Os05g05800	auxin	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	These data indicated that the phenotypes of OsmiR393-overexpressing rice may be caused through hyposensitivity to the auxin signal by reduced expression of two auxin receptor genes (OsTIR1 and OsAFB2)
OsTIR1	Os05g0150500	LOC_Os05g05800	auxin	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsTIR1	Os05g0150500	LOC_Os05g05800	drought	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice
OsTIR1	Os05g0150500	LOC_Os05g05800	transporter	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsTIR1	Os05g0150500	LOC_Os05g05800	transcription factor	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Transcript analysis revealed that Pi-responsive genes--Phosphate starvation (OsIPS)1 and OsIPS2, SYG1/Pho81/XPR1(OsSPX1), Sulfoquinovosyldiacylglycerol 2 (OsSQD2), R2R3 MYB transcription factor (OsMYB2P-1) and Transport Inhibitor Response1 (OsTIR1)--were more abundant in the osarf12 and osarf12/25 mutants under +Pi/-Pi conditions
OsTIR1	Os05g0150500	LOC_Os05g05800	auxin	Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa)	* This study functionally characterizes two members of the rice (Oryza sativa) miR393 family and their target genes, OsTIR1 and OsAFB2 (AUXIN SIGNALING F-BOX), the two closest homologs of Arabidopsis TRANSPORT INHIBITOR RESPONSE 1 (TIR1)
OsTIR1	Os05g0150500	LOC_Os05g05800	phosphate	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)	Transcript analysis revealed that Pi-responsive genes--Phosphate starvation (OsIPS)1 and OsIPS2, SYG1/Pho81/XPR1(OsSPX1), Sulfoquinovosyldiacylglycerol 2 (OsSQD2), R2R3 MYB transcription factor (OsMYB2P-1) and Transport Inhibitor Response1 (OsTIR1)--were more abundant in the osarf12 and osarf12/25 mutants under +Pi/-Pi conditions
OsTIR1	Os05g0150500	LOC_Os05g05800	tiller	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsTIR1	Os05g0150500	LOC_Os05g05800	tiller	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice
OsTIR1	Os05g0150500	LOC_Os05g05800	salt	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice
OsTIR1	Os05g0150500	LOC_Os05g05800	tillering	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice	The expression of an auxin transporter (OsAUX1) and a tillering inhibitor (OsTB1) were downregulated by overexpression of OsmiR393, which suggested that a gene chain from OsmiR393 to rice tillering may be from OsTIR1 and OsAFB2 to OsAUX1, which affected the transportation of auxin, then to OsTB1, which finally controlled tillering
OsTIR1	Os05g0150500	LOC_Os05g05800	growth	Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance	We created targeted OsTIR1 and OsAFB2-5 mutations in rice using CRISPR/Cas9 genome editing, and functionally characterized the roles of these five members in plant growth and development and auxinic herbicide resistance
OsTIR1	Os05g0150500	LOC_Os05g05800	resistance	Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance	We created targeted OsTIR1 and OsAFB2-5 mutations in rice using CRISPR/Cas9 genome editing, and functionally characterized the roles of these five members in plant growth and development and auxinic herbicide resistance
OsTIR1	Os05g0150500	LOC_Os05g05800	development	Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance	We created targeted OsTIR1 and OsAFB2-5 mutations in rice using CRISPR/Cas9 genome editing, and functionally characterized the roles of these five members in plant growth and development and auxinic herbicide resistance
OsTIR1	Os05g0150500	LOC_Os05g05800	plant growth	Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance	We created targeted OsTIR1 and OsAFB2-5 mutations in rice using CRISPR/Cas9 genome editing, and functionally characterized the roles of these five members in plant growth and development and auxinic herbicide resistance
OsTIR1	Os05g0150500	LOC_Os05g05800	herbicide resistance	Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance	We created targeted OsTIR1 and OsAFB2-5 mutations in rice using CRISPR/Cas9 genome editing, and functionally characterized the roles of these five members in plant growth and development and auxinic herbicide resistance
OsTIR1	Os05g0150500	LOC_Os05g05800	defense	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	Together with our previous discovery that the viral P2 protein stabilizes OsIAA10 protein via thwarting its interaction with OsTIR1 to enhance viral infection and pathogenesis, our results reveal a novel auxin-IAA10-ARFs-mediated signaling mechanism employed by rice and RDV for defense and counter defense responses
OsTIR1	Os05g0150500	LOC_Os05g05800	defense response	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus	Together with our previous discovery that the viral P2 protein stabilizes OsIAA10 protein via thwarting its interaction with OsTIR1 to enhance viral infection and pathogenesis, our results reveal a novel auxin-IAA10-ARFs-mediated signaling mechanism employed by rice and RDV for defense and counter defense responses
OsTITANIA	Os03g0239200	LOC_Os03g13590	growth	A rice PHD-finger protein OsTITANIA, is a growth regulator that functions through elevating expression of transporter genes for multiple metals.	A rice PHD-finger protein OsTITANIA, is a growth regulator that functions through elevating expression of transporter genes for multiple metals.
OsTITANIA	Os03g0239200	LOC_Os03g13590	metal transport	A rice PHD-finger protein OsTITANIA, is a growth regulator that functions through elevating expression of transporter genes for multiple metals.	OsTTA is required for the maintenance of metal transport associated gene expression
OsTITANIA	Os03g0239200	LOC_Os03g13590	transcription factor	A rice PHD-finger protein OsTITANIA, is a growth regulator that functions through elevating expression of transporter genes for multiple metals.	These findings establish that OsTTA is a transcription factor that supports basic metal supply to the growing portions of plants and is part of an environmental response mechanism.
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Loss of function of OsTKPR1 delayed tapetum degradation, reduced the levels of anther cuticular lipids, and impaired Ubisch body and pollen exine formation, resulting in complete male sterility
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Localization studies suggest that OsTKPR1 accumulates in the endoplasmic reticulum, while specific accumulation of OsTKPR1 mRNA in the anther tapetum and microspores is consistent with its function in anther and pollen wall development
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Our results show that OsTKPR1 is indispensable for anther cuticle development and pollen wall formation in rice, providing new insights into the biochemical mechanisms of the conserved sporopollenin metabolon in flowering plants
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	anther	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	anther	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Loss of function of OsTKPR1 delayed tapetum degradation, reduced the levels of anther cuticular lipids, and impaired Ubisch body and pollen exine formation, resulting in complete male sterility
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	anther	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Localization studies suggest that OsTKPR1 accumulates in the endoplasmic reticulum, while specific accumulation of OsTKPR1 mRNA in the anther tapetum and microspores is consistent with its function in anther and pollen wall development
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	anther	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Our results show that OsTKPR1 is indispensable for anther cuticle development and pollen wall formation in rice, providing new insights into the biochemical mechanisms of the conserved sporopollenin metabolon in flowering plants
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	sterility	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Loss of function of OsTKPR1 delayed tapetum degradation, reduced the levels of anther cuticular lipids, and impaired Ubisch body and pollen exine formation, resulting in complete male sterility
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	development	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	development	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Localization studies suggest that OsTKPR1 accumulates in the endoplasmic reticulum, while specific accumulation of OsTKPR1 mRNA in the anther tapetum and microspores is consistent with its function in anther and pollen wall development
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	development	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Our results show that OsTKPR1 is indispensable for anther cuticle development and pollen wall formation in rice, providing new insights into the biochemical mechanisms of the conserved sporopollenin metabolon in flowering plants
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	cuticle	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	cuticle	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Our results show that OsTKPR1 is indispensable for anther cuticle development and pollen wall formation in rice, providing new insights into the biochemical mechanisms of the conserved sporopollenin metabolon in flowering plants
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	tapetum	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Loss of function of OsTKPR1 delayed tapetum degradation, reduced the levels of anther cuticular lipids, and impaired Ubisch body and pollen exine formation, resulting in complete male sterility
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	tapetum	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Localization studies suggest that OsTKPR1 accumulates in the endoplasmic reticulum, while specific accumulation of OsTKPR1 mRNA in the anther tapetum and microspores is consistent with its function in anther and pollen wall development
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	male sterility	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Loss of function of OsTKPR1 delayed tapetum degradation, reduced the levels of anther cuticular lipids, and impaired Ubisch body and pollen exine formation, resulting in complete male sterility
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen wall	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen wall	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Localization studies suggest that OsTKPR1 accumulates in the endoplasmic reticulum, while specific accumulation of OsTKPR1 mRNA in the anther tapetum and microspores is consistent with its function in anther and pollen wall development
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen wall	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	Our results show that OsTKPR1 is indispensable for anther cuticle development and pollen wall formation in rice, providing new insights into the biochemical mechanisms of the conserved sporopollenin metabolon in flowering plants
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen exine formation	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	 Loss of function of OsTKPR1 delayed tapetum degradation, reduced the levels of anther cuticular lipids, and impaired Ubisch body and pollen exine formation, resulting in complete male sterility
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	transcription factor	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 Furthermore, an R2R3 MYB transcription factor OsMYB103/OsMYB80/OsMS188/BM1, involved in tapetum and pollen development, regulates the expression of OsCCRL1
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 In the current study, to investigate this, we identified and analyzed the male-sterile mutant, osccrl1 (cinnamoyl coA reductase-like 1), which exhibited delayed tapetal programmed cell death (PCD) and defective mature pollen
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 Furthermore, an R2R3 MYB transcription factor OsMYB103/OsMYB80/OsMS188/BM1, involved in tapetum and pollen development, regulates the expression of OsCCRL1
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	map-based cloning	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 Map-based cloning, genetic complementation, and gene knockout revealed that OsCCRL1 corresponds to the gene LOC_Os09g32020
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	nucleus	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 OsCCRL1 was preferentially expressed in the tapetal cells and microspores, and localized to the nucleus and cytoplasm in both rice protoplasts and Nicotiana benthamiana leaves
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	tapetum	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 The osccrl1 mutant exhibited reduced CCRs enzyme activity, less lignin accumulation, delayed tapetum degradation, and disrupted phenylpropanoid metabolism
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	tapetum	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 Furthermore, an R2R3 MYB transcription factor OsMYB103/OsMYB80/OsMS188/BM1, involved in tapetum and pollen development, regulates the expression of OsCCRL1
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	pollen development	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 Furthermore, an R2R3 MYB transcription factor OsMYB103/OsMYB80/OsMS188/BM1, involved in tapetum and pollen development, regulates the expression of OsCCRL1
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	cell death	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 In the current study, to investigate this, we identified and analyzed the male-sterile mutant, osccrl1 (cinnamoyl coA reductase-like 1), which exhibited delayed tapetal programmed cell death (PCD) and defective mature pollen
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	cytoplasm	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 OsCCRL1 was preferentially expressed in the tapetal cells and microspores, and localized to the nucleus and cytoplasm in both rice protoplasts and Nicotiana benthamiana leaves
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	tapetal	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 In the current study, to investigate this, we identified and analyzed the male-sterile mutant, osccrl1 (cinnamoyl coA reductase-like 1), which exhibited delayed tapetal programmed cell death (PCD) and defective mature pollen
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	tapetal	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 OsCCRL1 was preferentially expressed in the tapetal cells and microspores, and localized to the nucleus and cytoplasm in both rice protoplasts and Nicotiana benthamiana leaves
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	lignin	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 The osccrl1 mutant exhibited reduced CCRs enzyme activity, less lignin accumulation, delayed tapetum degradation, and disrupted phenylpropanoid metabolism
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	programmed cell death	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 In the current study, to investigate this, we identified and analyzed the male-sterile mutant, osccrl1 (cinnamoyl coA reductase-like 1), which exhibited delayed tapetal programmed cell death (PCD) and defective mature pollen
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	protoplasts	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 OsCCRL1 was preferentially expressed in the tapetal cells and microspores, and localized to the nucleus and cytoplasm in both rice protoplasts and Nicotiana benthamiana leaves
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	tapetal programmed cell death	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 In the current study, to investigate this, we identified and analyzed the male-sterile mutant, osccrl1 (cinnamoyl coA reductase-like 1), which exhibited delayed tapetal programmed cell death (PCD) and defective mature pollen
OsTKPR1|OsDFR2|OS-DFR2|OsCCRL1	Os09g0493500	LOC_Os09g32020	tapetum degradation	OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	 The osccrl1 mutant exhibited reduced CCRs enzyme activity, less lignin accumulation, delayed tapetum degradation, and disrupted phenylpropanoid metabolism
OsTKPR2	Os01g0127500	LOC_Os01g03670	development	OsTKPR2 is part of a sporopollenin-producing metabolon required for exine formation in rice.	 Thus, our results demonstrated that OsTKPR2 is required for anther and pollen development where an OsTKPR2-containing metabolon is functional during rice sporopollenin synthesis
OsTKPR2	Os01g0127500	LOC_Os01g03670	fertility	OsTKPR2 is part of a sporopollenin-producing metabolon required for exine formation in rice.	 Three independent ostkpr2 mutant lines generated by CRISPR/Cas9 displayed reduced male fertility to various extents which were correlated with the severity of gene disruptions
OsTKPR2	Os01g0127500	LOC_Os01g03670	pollen	OsTKPR2 is part of a sporopollenin-producing metabolon required for exine formation in rice.	 Thus, our results demonstrated that OsTKPR2 is required for anther and pollen development where an OsTKPR2-containing metabolon is functional during rice sporopollenin synthesis
OsTKPR2	Os01g0127500	LOC_Os01g03670	anther	OsTKPR2 is part of a sporopollenin-producing metabolon required for exine formation in rice.	 Thus, our results demonstrated that OsTKPR2 is required for anther and pollen development where an OsTKPR2-containing metabolon is functional during rice sporopollenin synthesis
OsTKPR2	Os01g0127500	LOC_Os01g03670	pollen development	OsTKPR2 is part of a sporopollenin-producing metabolon required for exine formation in rice.	 Thus, our results demonstrated that OsTKPR2 is required for anther and pollen development where an OsTKPR2-containing metabolon is functional during rice sporopollenin synthesis
OsTKPR2	Os01g0127500	LOC_Os01g03670	male fertility	OsTKPR2 is part of a sporopollenin-producing metabolon required for exine formation in rice.	 Three independent ostkpr2 mutant lines generated by CRISPR/Cas9 displayed reduced male fertility to various extents which were correlated with the severity of gene disruptions
OsTLP27	Os01g0102300	LOC_Os01g01280	leaf	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency	OsTLP27 transcripts accumulated specifically in green tissues such as the leaf blade and leaf sheath, and the levels of its transcripts followed a circadian rhythm
OsTLP27	Os01g0102300	LOC_Os01g01280	chloroplast	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency	OsTLP27 was predicted to encode a thylakoid lumen protein of unknown function in chloroplast, and chloroplast targeting of OsTLP27 was confirmed by transient expression of a fusion protein with green fluorescent protein (GFP)
OsTLP27	Os01g0102300	LOC_Os01g01280	chloroplast	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency	Overexpression of OsTLP27 also enhanced transcript levels of genes related to chloroplast function and caused changes in the grana size and number
OsTLP27	Os01g0102300	LOC_Os01g01280	chloroplast	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency	These data suggested that OsTLP27 encodes a protein with a novel function in photosynthesis and chloroplast development in rice
OsTLP27	Os01g0102300	LOC_Os01g01280	chloroplast	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency
OsTLP27	Os01g0102300	LOC_Os01g01280	sheath	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency	OsTLP27 transcripts accumulated specifically in green tissues such as the leaf blade and leaf sheath, and the levels of its transcripts followed a circadian rhythm
OsTLP27	Os01g0102300	LOC_Os01g01280	photosynthesis	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency	These data suggested that OsTLP27 encodes a protein with a novel function in photosynthesis and chloroplast development in rice
OsTMF	Os05g0559900	LOC_Os05g48620	tolerance	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.
OsTMF	Os05g0559900	LOC_Os05g48620	tolerance	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Under cold stress conditions, OsTMF negatively regulated pectin content and peroxidase activity, and positively regulated cellulose content, causing corresponding alterations to cell wall properties, all of which collectively contribute to the negative effect of OsTMF on cold tolerance
OsTMF	Os05g0559900	LOC_Os05g48620	cold tolerance	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.
OsTMF	Os05g0559900	LOC_Os05g48620	cold tolerance	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Under cold stress conditions, OsTMF negatively regulated pectin content and peroxidase activity, and positively regulated cellulose content, causing corresponding alterations to cell wall properties, all of which collectively contribute to the negative effect of OsTMF on cold tolerance
OsTMF	Os05g0559900	LOC_Os05g48620	cold stress	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Cold stress increased the expression of OsTMF and accumulation of OsTMF in the nucleus, where OsTMF acts as a transcription activator and modulates the expression of genes involved in pectin degradation (OsBURP16), cellulose biosynthesis (OsCesA4 and OsCesA9), and cell wall structural maintenance (genes encoding proline-rich proteins and peroxidases)
OsTMF	Os05g0559900	LOC_Os05g48620	cold stress	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Under cold stress conditions, OsTMF negatively regulated pectin content and peroxidase activity, and positively regulated cellulose content, causing corresponding alterations to cell wall properties, all of which collectively contribute to the negative effect of OsTMF on cold tolerance
OsTMF	Os05g0559900	LOC_Os05g48620	stress	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Cold stress increased the expression of OsTMF and accumulation of OsTMF in the nucleus, where OsTMF acts as a transcription activator and modulates the expression of genes involved in pectin degradation (OsBURP16), cellulose biosynthesis (OsCesA4 and OsCesA9), and cell wall structural maintenance (genes encoding proline-rich proteins and peroxidases)
OsTMF	Os05g0559900	LOC_Os05g48620	stress	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Under cold stress conditions, OsTMF negatively regulated pectin content and peroxidase activity, and positively regulated cellulose content, causing corresponding alterations to cell wall properties, all of which collectively contribute to the negative effect of OsTMF on cold tolerance
OsTMF	Os05g0559900	LOC_Os05g48620	cellulose	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Cold stress increased the expression of OsTMF and accumulation of OsTMF in the nucleus, where OsTMF acts as a transcription activator and modulates the expression of genes involved in pectin degradation (OsBURP16), cellulose biosynthesis (OsCesA4 and OsCesA9), and cell wall structural maintenance (genes encoding proline-rich proteins and peroxidases)
OsTMF	Os05g0559900	LOC_Os05g48620	cellulose	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Under cold stress conditions, OsTMF negatively regulated pectin content and peroxidase activity, and positively regulated cellulose content, causing corresponding alterations to cell wall properties, all of which collectively contribute to the negative effect of OsTMF on cold tolerance
OsTMF	Os05g0559900	LOC_Os05g48620	cell wall	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.
OsTMF	Os05g0559900	LOC_Os05g48620	cell wall	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Cold stress increased the expression of OsTMF and accumulation of OsTMF in the nucleus, where OsTMF acts as a transcription activator and modulates the expression of genes involved in pectin degradation (OsBURP16), cellulose biosynthesis (OsCesA4 and OsCesA9), and cell wall structural maintenance (genes encoding proline-rich proteins and peroxidases)
OsTMF	Os05g0559900	LOC_Os05g48620	cell wall	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Under cold stress conditions, OsTMF negatively regulated pectin content and peroxidase activity, and positively regulated cellulose content, causing corresponding alterations to cell wall properties, all of which collectively contribute to the negative effect of OsTMF on cold tolerance
OsTMF	Os05g0559900	LOC_Os05g48620	transcription activator	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Cold stress increased the expression of OsTMF and accumulation of OsTMF in the nucleus, where OsTMF acts as a transcription activator and modulates the expression of genes involved in pectin degradation (OsBURP16), cellulose biosynthesis (OsCesA4 and OsCesA9), and cell wall structural maintenance (genes encoding proline-rich proteins and peroxidases)
OsTMF	Os05g0559900	LOC_Os05g48620	cold	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.
OsTMF	Os05g0559900	LOC_Os05g48620	cold	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Cold stress increased the expression of OsTMF and accumulation of OsTMF in the nucleus, where OsTMF acts as a transcription activator and modulates the expression of genes involved in pectin degradation (OsBURP16), cellulose biosynthesis (OsCesA4 and OsCesA9), and cell wall structural maintenance (genes encoding proline-rich proteins and peroxidases)
OsTMF	Os05g0559900	LOC_Os05g48620	cold	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	Under cold stress conditions, OsTMF negatively regulated pectin content and peroxidase activity, and positively regulated cellulose content, causing corresponding alterations to cell wall properties, all of which collectively contribute to the negative effect of OsTMF on cold tolerance
OsTMK	Os03g0717000	LOC_Os03g50810	protein kinase	Expression of a gibberellin-induced leucine-rich repeat receptor-like protein kinase in deepwater rice and its interaction with kinase-associated protein phosphatase	This indicates that OsTMK, like TMK1, is a Ser/Thr protein kinase.
OsTMN11	Os02g0797700	LOC_Os02g55440	growth	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 OsTMN11 knockdown (by RNAi) compromised the growth of young rice, manifested as shorter plant height, reduced biomass, and chlorosis under excessive Mn and Cd conditions
OsTMN11	Os02g0797700	LOC_Os02g55440	growth	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 The mature RNAi plants contained less Mn but accumulated Cd in grains and rice straw, confirming that OsTMN11 plays a fundamental role in metal homeostasis associated with rice growth and development even under normal Mn supply conditions
OsTMN11	Os02g0797700	LOC_Os02g55440	development	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 Two lifelong field trials with rice cropped in either normal Mn supply conditions or in Cd-contaminated farmland demonstrated that knockdown of OsTMN11 impaired the capacity of seed development (including panicle, spikelet fertility, seed length, grain weight, etc
OsTMN11	Os02g0797700	LOC_Os02g55440	development	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 The mature RNAi plants contained less Mn but accumulated Cd in grains and rice straw, confirming that OsTMN11 plays a fundamental role in metal homeostasis associated with rice growth and development even under normal Mn supply conditions
OsTMN11	Os02g0797700	LOC_Os02g55440	spikelet	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 Two lifelong field trials with rice cropped in either normal Mn supply conditions or in Cd-contaminated farmland demonstrated that knockdown of OsTMN11 impaired the capacity of seed development (including panicle, spikelet fertility, seed length, grain weight, etc
OsTMN11	Os02g0797700	LOC_Os02g55440	grain	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 Two lifelong field trials with rice cropped in either normal Mn supply conditions or in Cd-contaminated farmland demonstrated that knockdown of OsTMN11 impaired the capacity of seed development (including panicle, spikelet fertility, seed length, grain weight, etc
OsTMN11	Os02g0797700	LOC_Os02g55440	stress	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 OsTMN11 was ubiquitously expressed over the lifespan of rice and strongly upregulated in young rice under excess Mn(II)/Cd(II) stress
OsTMN11	Os02g0797700	LOC_Os02g55440	seed	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 Two lifelong field trials with rice cropped in either normal Mn supply conditions or in Cd-contaminated farmland demonstrated that knockdown of OsTMN11 impaired the capacity of seed development (including panicle, spikelet fertility, seed length, grain weight, etc
OsTMN11	Os02g0797700	LOC_Os02g55440	homeostasis	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 The mature RNAi plants contained less Mn but accumulated Cd in grains and rice straw, confirming that OsTMN11 plays a fundamental role in metal homeostasis associated with rice growth and development even under normal Mn supply conditions
OsTMN11	Os02g0797700	LOC_Os02g55440	grain weight	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 Two lifelong field trials with rice cropped in either normal Mn supply conditions or in Cd-contaminated farmland demonstrated that knockdown of OsTMN11 impaired the capacity of seed development (including panicle, spikelet fertility, seed length, grain weight, etc
OsTMN11	Os02g0797700	LOC_Os02g55440	plant height	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 OsTMN11 knockdown (by RNAi) compromised the growth of young rice, manifested as shorter plant height, reduced biomass, and chlorosis under excessive Mn and Cd conditions
OsTMN11	Os02g0797700	LOC_Os02g55440	seed development	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 Two lifelong field trials with rice cropped in either normal Mn supply conditions or in Cd-contaminated farmland demonstrated that knockdown of OsTMN11 impaired the capacity of seed development (including panicle, spikelet fertility, seed length, grain weight, etc
OsTMN11	Os02g0797700	LOC_Os02g55440	seed length	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	 Two lifelong field trials with rice cropped in either normal Mn supply conditions or in Cd-contaminated farmland demonstrated that knockdown of OsTMN11 impaired the capacity of seed development (including panicle, spikelet fertility, seed length, grain weight, etc
OsTMS18	Os10g0524500	LOC_Os10g38050	transcription factor	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Further analysis showed that the tapetal transcription factor OsMS188 directly regulates OsTMS18 for pollen wall formation
OsTMS18	Os10g0524500	LOC_Os10g38050	temperature	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Cellular analysis revealed the pollen wall of ostms18 to be defective, leading to aborted pollen under high temperature
OsTMS18	Os10g0524500	LOC_Os10g38050	development	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Under low temperature, the flawed pollen wall in ostms18 is sufficient to protect its microspore, allowing for development of functional pollen and restoring fertility
OsTMS18	Os10g0524500	LOC_Os10g38050	fertility	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Under low temperature, the flawed pollen wall in ostms18 is sufficient to protect its microspore, allowing for development of functional pollen and restoring fertility
OsTMS18	Os10g0524500	LOC_Os10g38050	pollen	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Cellular analysis revealed the pollen wall of ostms18 to be defective, leading to aborted pollen under high temperature
OsTMS18	Os10g0524500	LOC_Os10g38050	pollen	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Further analysis showed that the tapetal transcription factor OsMS188 directly regulates OsTMS18 for pollen wall formation
OsTMS18	Os10g0524500	LOC_Os10g38050	pollen	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Under low temperature, the flawed pollen wall in ostms18 is sufficient to protect its microspore, allowing for development of functional pollen and restoring fertility
OsTMS18	Os10g0524500	LOC_Os10g38050	sterility	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 ostms18 sterility is more stable in summer than the TGMS line carrying the widely used locus tms5 in the ZH11 genetic background, suggesting its potential application for rice breeding
OsTMS18	Os10g0524500	LOC_Os10g38050	sterility	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 The ostms18 TGMS trait is caused by the point mutation from Gly to Ser in a glucose-methanol-choline (GMC) oxidoreductase; knockout of the oxidoreductase was previously reported to cause complete male sterility
OsTMS18	Os10g0524500	LOC_Os10g38050	pollen wall	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Cellular analysis revealed the pollen wall of ostms18 to be defective, leading to aborted pollen under high temperature
OsTMS18	Os10g0524500	LOC_Os10g38050	pollen wall	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Further analysis showed that the tapetal transcription factor OsMS188 directly regulates OsTMS18 for pollen wall formation
OsTMS18	Os10g0524500	LOC_Os10g38050	pollen wall	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Under low temperature, the flawed pollen wall in ostms18 is sufficient to protect its microspore, allowing for development of functional pollen and restoring fertility
OsTMS18	Os10g0524500	LOC_Os10g38050	breeding	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 ostms18 sterility is more stable in summer than the TGMS line carrying the widely used locus tms5 in the ZH11 genetic background, suggesting its potential application for rice breeding
OsTMS18	Os10g0524500	LOC_Os10g38050	tapetal	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 Further analysis showed that the tapetal transcription factor OsMS188 directly regulates OsTMS18 for pollen wall formation
OsTMS18	Os10g0524500	LOC_Os10g38050	male sterility	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	 The ostms18 TGMS trait is caused by the point mutation from Gly to Ser in a glucose-methanol-choline (GMC) oxidoreductase; knockout of the oxidoreductase was previously reported to cause complete male sterility
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	transporter	Expression analysis and functional characterization of the monosaccharide transporters, OsTMTs, involving vacuolar sugar transport in rice (Oryza sativa)	To characterize the rice (Oryza sativa) tonoplast monosaccharide transporters, OsTMT1 and OsTMT2, we analysed their subcellular localization using green fluorescent protein (GFP) and expression patterns using reverse-transcription polymerase chain reaction (RT-PCR), performed histochemical beta-glucuronidase (GUS) assay and in situ hybridization analysis, and assessed sugar transport ability using isolated vacuoles
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sheath	Expression analysis and functional characterization of the monosaccharide transporters, OsTMTs, involving vacuolar sugar transport in rice (Oryza sativa)	Analyses of OsTMT promoter-GUS transgenic rice indicated that OsTMT1 and OsTMT2 are highly expressed in bundle sheath cells, and in vascular parenchyma and companion cells in leaves, respectively
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	transcription factor	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 The modification of the sugar transport between cytosol and vacuole mediated by OsTST1 induces deregulation of several genes including transcription factors (TFs)
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	growth	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 In summary, no matter the location of sucrose and sink is, these preliminary results revealed that OsTST1 was important for sugar transport from source to sink tissues, thus affecting plant growth and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	development	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	OsTST1 affects yield and development and mediates sugar transportation of plants from source to sink in rice, which influences the accumulation of intermediate metabolites from tricarboxylic acid cycle indirectly
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	development	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	) sugar transport protein OsTST1 affects yield and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	development	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 In summary, no matter the location of sucrose and sink is, these preliminary results revealed that OsTST1 was important for sugar transport from source to sink tissues, thus affecting plant growth and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	yield	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	OsTST1 affects yield and development and mediates sugar transportation of plants from source to sink in rice, which influences the accumulation of intermediate metabolites from tricarboxylic acid cycle indirectly
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	yield	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	) sugar transport protein OsTST1 affects yield and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	yield	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 In this study, we found that OsTST1 knockout mutants generated via CRISPR/Cas9 exhibited slower development, smaller seeds, and lower yield than wild type (WT) rice plants
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	plant growth	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 In summary, no matter the location of sucrose and sink is, these preliminary results revealed that OsTST1 was important for sugar transport from source to sink tissues, thus affecting plant growth and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sugar	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	OsTST1 affects yield and development and mediates sugar transportation of plants from source to sink in rice, which influences the accumulation of intermediate metabolites from tricarboxylic acid cycle indirectly
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sugar	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	) sugar transport protein OsTST1 affects yield and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sugar	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 The modification of the sugar transport between cytosol and vacuole mediated by OsTST1 induces deregulation of several genes including transcription factors (TFs)
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sugar	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 In summary, no matter the location of sucrose and sink is, these preliminary results revealed that OsTST1 was important for sugar transport from source to sink tissues, thus affecting plant growth and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sucrose	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 In summary, no matter the location of sucrose and sink is, these preliminary results revealed that OsTST1 was important for sugar transport from source to sink tissues, thus affecting plant growth and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	flowering	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 Changes in rice leaves at 14 days after germination (DAG) and at 10 days after flowering (DAF) suggested that OsTST1 affected the accumulation of intermediate metabolites from the glycolytic pathway and the tricarboxylic acid (TCA) cycle
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sugar transport	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	OsTST1 affects yield and development and mediates sugar transportation of plants from source to sink in rice, which influences the accumulation of intermediate metabolites from tricarboxylic acid cycle indirectly
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sugar transport	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	) sugar transport protein OsTST1 affects yield and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sugar transport	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 The modification of the sugar transport between cytosol and vacuole mediated by OsTST1 induces deregulation of several genes including transcription factors (TFs)
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	sugar transport	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 In summary, no matter the location of sucrose and sink is, these preliminary results revealed that OsTST1 was important for sugar transport from source to sink tissues, thus affecting plant growth and development
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	cytosol	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 The modification of the sugar transport between cytosol and vacuole mediated by OsTST1 induces deregulation of several genes including transcription factors (TFs)
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	glycolytic pathway	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	 Changes in rice leaves at 14 days after germination (DAG) and at 10 days after flowering (DAF) suggested that OsTST1 affected the accumulation of intermediate metabolites from the glycolytic pathway and the tricarboxylic acid (TCA) cycle
OsTMT1|OsTST1	Os10g0539900	LOC_Os10g39440	height	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.)	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.)
OsTMT2	Os02g0229400	LOC_Os02g13560	transporter	Expression analysis and functional characterization of the monosaccharide transporters, OsTMTs, involving vacuolar sugar transport in rice (Oryza sativa)	To characterize the rice (Oryza sativa) tonoplast monosaccharide transporters, OsTMT1 and OsTMT2, we analysed their subcellular localization using green fluorescent protein (GFP) and expression patterns using reverse-transcription polymerase chain reaction (RT-PCR), performed histochemical beta-glucuronidase (GUS) assay and in situ hybridization analysis, and assessed sugar transport ability using isolated vacuoles
OsTMT2	Os02g0229400	LOC_Os02g13560	sheath	Expression analysis and functional characterization of the monosaccharide transporters, OsTMTs, involving vacuolar sugar transport in rice (Oryza sativa)	Analyses of OsTMT promoter-GUS transgenic rice indicated that OsTMT1 and OsTMT2 are highly expressed in bundle sheath cells, and in vascular parenchyma and companion cells in leaves, respectively
OsTOD1	Os01g0210400	LOC_Os01g11220	growth	Turgor regulation defect 1 proteins play a conserved role in pollen tube reproductive innovation of the angiosperms.	OsTOD1 knockout results in reduced pollen tube growth potential in rice pistil
OsTOD1	Os01g0210400	LOC_Os01g11220	pollen	Turgor regulation defect 1 proteins play a conserved role in pollen tube reproductive innovation of the angiosperms.	OsTOD1 knockout results in reduced pollen tube growth potential in rice pistil
OsTOP1	Os08g0154600	LOC_Os08g05840	root	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Here we showed that knockdown of OsTOP1 strongly affects rice development, causing defects in root architecture and gravitropism which are the consequences of mis-regulation of auxin signaling and transporter genes
OsTOP1	Os08g0154600	LOC_Os08g05840	root	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Our data reveals R-loops as important factors in polar auxin transport and plant root development, and highlights that OsTOP1 functions as a key to link transcriptional R-loops and plant hormone signaling
OsTOP1	Os08g0154600	LOC_Os08g05840	root development	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Our data reveals R-loops as important factors in polar auxin transport and plant root development, and highlights that OsTOP1 functions as a key to link transcriptional R-loops and plant hormone signaling
OsTOP1	Os08g0154600	LOC_Os08g05840	auxin	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Here we showed that knockdown of OsTOP1 strongly affects rice development, causing defects in root architecture and gravitropism which are the consequences of mis-regulation of auxin signaling and transporter genes
OsTOP1	Os08g0154600	LOC_Os08g05840	auxin	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Our data reveals R-loops as important factors in polar auxin transport and plant root development, and highlights that OsTOP1 functions as a key to link transcriptional R-loops and plant hormone signaling
OsTOP1	Os08g0154600	LOC_Os08g05840	architecture	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Here we showed that knockdown of OsTOP1 strongly affects rice development, causing defects in root architecture and gravitropism which are the consequences of mis-regulation of auxin signaling and transporter genes
OsTOP1	Os08g0154600	LOC_Os08g05840	auxin transport	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Our data reveals R-loops as important factors in polar auxin transport and plant root development, and highlights that OsTOP1 functions as a key to link transcriptional R-loops and plant hormone signaling
OsTOP1	Os08g0154600	LOC_Os08g05840	transporter	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Here we showed that knockdown of OsTOP1 strongly affects rice development, causing defects in root architecture and gravitropism which are the consequences of mis-regulation of auxin signaling and transporter genes
OsTOP1	Os08g0154600	LOC_Os08g05840	root architecture	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Here we showed that knockdown of OsTOP1 strongly affects rice development, causing defects in root architecture and gravitropism which are the consequences of mis-regulation of auxin signaling and transporter genes
OsTOP6A3	Os03g0284800	LOC_Os03g17610	auxin	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	The expression of OsTOP6A2, OsTOP6A3 and OsTOP6B was differentially regulated by the plant hormones, auxin, cytokinin, and abscisic acid
OsTOP6A3	Os03g0284800	LOC_Os03g17610	cytokinin	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	The expression of OsTOP6A2, OsTOP6A3 and OsTOP6B was differentially regulated by the plant hormones, auxin, cytokinin, and abscisic acid
OsTOP6A3	Os03g0284800	LOC_Os03g17610	salinity	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	Overexpression of OsTOP6A3 and OsTOP6B in transgenic Arabidopsis plants conferred reduced sensitivity to the stress hormone, abscisic acid, and tolerance to high salinity and dehydration
OsTOP6A3	Os03g0284800	LOC_Os03g17610	flower	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	The transcript abundance of OsTOP6A2, OsTOP6A3 and OsTOP6B was also higher in prepollinated flowers and callus
OsTOP6B	Os09g0279600	LOC_Os09g10770	salinity	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	Overexpression of OsTOP6A3 and OsTOP6B in transgenic Arabidopsis plants conferred reduced sensitivity to the stress hormone, abscisic acid, and tolerance to high salinity and dehydration
OsTOP6B	Os09g0279600	LOC_Os09g10770	auxin	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	The expression of OsTOP6A2, OsTOP6A3 and OsTOP6B was differentially regulated by the plant hormones, auxin, cytokinin, and abscisic acid
OsTOP6B	Os09g0279600	LOC_Os09g10770	flower	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	The transcript abundance of OsTOP6A2, OsTOP6A3 and OsTOP6B was also higher in prepollinated flowers and callus
OsTOP6B	Os09g0279600	LOC_Os09g10770	cytokinin	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	The expression of OsTOP6A2, OsTOP6A3 and OsTOP6B was differentially regulated by the plant hormones, auxin, cytokinin, and abscisic acid
OsTPC1	Os01g0678500	LOC_Os01g48680	cell death	Intracellular localization and physiological function of a rice Ca(2)(+)-permeable channel OsTPC1	Rice OsTPC1 is predominantly localized to the plasma membrane (PM), and assumed to play an important role as a Ca(2)(+)-permeable cation channel in the regulation of cytosolic Ca(2)(+) rise and innate immune responses including hypersensitive cell death and phytoalexin biosynthesis in cultured rice cells triggered by a fungal elicitor, xylanase from Trichoderma viride
OsTPC1	Os01g0678500	LOC_Os01g48680	cell death	Regulation of a Proteinaceous Elicitor-induced Ca2+ Influx and Production of Phytoalexins by a Putative Voltage-gated Cation Channel, OsTPC1, in Cultured Rice Cells	A putative voltage-gated cation channel, OsTPC1 has been shown to play a critical role in hypersensitive cell death induced by a fungal xylanase protein (TvX) in suspension-cultured rice cells
OsTPC1	Os01g0678500	LOC_Os01g48680	growth	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	OsTPC1 rescued the Ca2+ uptake activity and growth rate of a yeast mutant cch1
OsTPC1	Os01g0678500	LOC_Os01g48680	growth	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	OsTPC1-overexpressing cells showed hypersensitivity to excess Ca2+ but higher growth rate under Ca2+ limitation, while growth of the OsTPC1-knockout cultured cells was less sensitive to extracellular free Ca2+ concentration, suggesting that OsTPC1 has Ca2+ transport activity across the plasma membrane
OsTPC1	Os01g0678500	LOC_Os01g48680	growth	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	OsTPC1-overexpressing plants showed reduced growth and abnormal greening of roots
OsTPC1	Os01g0678500	LOC_Os01g48680	growth	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	Growth of Ostpc1 seedlings was comparable to the control on agar plates, while significantly reduced in adult plants
OsTPC1	Os01g0678500	LOC_Os01g48680	growth	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	These results suggest that OsTPC1 functions as a Ca2+ -permeable channel involved in the regulation of growth and development
OsTPC1	Os01g0678500	LOC_Os01g48680	growth	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice
OsTPC1	Os01g0678500	LOC_Os01g48680	shoot	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	We here identified a gene (OsTPC1) encoding a putative voltage-gated Ca2+ channel from rice, ubiquitously expressed in mature leaves, shoots and roots as well as in cultured cells
OsTPC1	Os01g0678500	LOC_Os01g48680	seedling	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	Growth of Ostpc1 seedlings was comparable to the control on agar plates, while significantly reduced in adult plants
OsTPC1	Os01g0678500	LOC_Os01g48680	root	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	We here identified a gene (OsTPC1) encoding a putative voltage-gated Ca2+ channel from rice, ubiquitously expressed in mature leaves, shoots and roots as well as in cultured cells
OsTPC1	Os01g0678500	LOC_Os01g48680	root	Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice	OsTPC1-overexpressing plants showed reduced growth and abnormal greening of roots
OsTPKa	Os03g0752300	LOC_Os03g54100	growth	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 On the other hand, positively transformed T(0) plants with the OsTPKa gene from Horkuch consistently showed growth advantage under both control and salt stress
OsTPKa	Os03g0752300	LOC_Os03g54100	growth	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsTPKa	Os03g0752300	LOC_Os03g54100	growth	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 Moreover, the growth advantage provided by overexpression of the vacuolar OsTPKa K(+) transporter, particularly under salt stress reconfirms its important role in providing salt tolerance
OsTPKa	Os03g0752300	LOC_Os03g54100	stress	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 On the other hand, positively transformed T(0) plants with the OsTPKa gene from Horkuch consistently showed growth advantage under both control and salt stress
OsTPKa	Os03g0752300	LOC_Os03g54100	stress	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsTPKa	Os03g0752300	LOC_Os03g54100	stress	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 Moreover, the growth advantage provided by overexpression of the vacuolar OsTPKa K(+) transporter, particularly under salt stress reconfirms its important role in providing salt tolerance
OsTPKa	Os03g0752300	LOC_Os03g54100	Down-regulated genes	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsTPKa	Os03g0752300	LOC_Os03g54100	salt	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 On the other hand, positively transformed T(0) plants with the OsTPKa gene from Horkuch consistently showed growth advantage under both control and salt stress
OsTPKa	Os03g0752300	LOC_Os03g54100	salt	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsTPKa	Os03g0752300	LOC_Os03g54100	salt	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 Moreover, the growth advantage provided by overexpression of the vacuolar OsTPKa K(+) transporter, particularly under salt stress reconfirms its important role in providing salt tolerance
OsTPKa	Os03g0752300	LOC_Os03g54100	tolerance	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 Moreover, the growth advantage provided by overexpression of the vacuolar OsTPKa K(+) transporter, particularly under salt stress reconfirms its important role in providing salt tolerance
OsTPKa	Os03g0752300	LOC_Os03g54100	potassium	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 These are OsTPKa or Vacuolar two-pore potassium channel and OsHAK_like or a hypothetical protein of the HAK family
OsTPKa	Os03g0752300	LOC_Os03g54100	salt tolerance	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 Moreover, the growth advantage provided by overexpression of the vacuolar OsTPKa K(+) transporter, particularly under salt stress reconfirms its important role in providing salt tolerance
OsTPKa	Os03g0752300	LOC_Os03g54100	salt stress	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 On the other hand, positively transformed T(0) plants with the OsTPKa gene from Horkuch consistently showed growth advantage under both control and salt stress
OsTPKa	Os03g0752300	LOC_Os03g54100	salt stress	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsTPKa	Os03g0752300	LOC_Os03g54100	salt stress	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 Moreover, the growth advantage provided by overexpression of the vacuolar OsTPKa K(+) transporter, particularly under salt stress reconfirms its important role in providing salt tolerance
OsTPKa	Os03g0752300	LOC_Os03g54100	plant growth	Functional genomic analysis of K(+) related salt-responsive transporters in tolerant and sensitive genotypes of rice.	 DISCUSSION: The poor performance of the transgenic plants with the down-regulated genes OsTPKa and OsHAK_like under salt stress supports the assumption that OsTPKa and OsHAK_like play important roles in defending the rice landrace Horkuch against salt stress, minimizing salt injury, and maintaining plant growth
OsTPKb	Os07g0108800	LOC_Os07g01810	drought tolerance	Overexpression of the potassium channel TPKb in small vacuoles confers osmotic and drought tolerance to rice.	Overexpression of the potassium channel TPKb in small vacuoles confers osmotic and drought tolerance to rice.
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	meristem	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Close examination revealed that regulation of meristem fate was compromised in asp1: degeneration of the inflorescence meristem was delayed, transition from the branch meristem to the spikelet meristem was accelerated, and stem cell maintenance in both the branch meristem and the spikelet meristem was compromised
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	meristem	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	It is likely that the pleiotropic defects are associated with de-repression of multiple genes related to meristem function in the asp1 mutant
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	branching	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Here we analyzed a recessive mutant of rice, aberrant spikelet and panicle1 (asp1), that showed pleiotropic phenotypes such as a disorganized branching pattern, aberrant spikelet morphology, and disarrangement of phyllotaxy
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	vegetative	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	The asp1 mutant also showed de-repression of axillary bud growth and disturbed phyllotaxy in the vegetative phase, suggesting that the function of this gene is closely associated with auxin action
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	pollen	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Cytological examination confirmed that OsLIS-L1 does not affect the meiosis in pollen mother cells
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	pollen	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Compared with wild type, the oslis-l1 mutant had abnormal male gametophyte formation, but anther cell wall and pollen wall development were not affected
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	auxin	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	The asp1 mutant also showed de-repression of axillary bud growth and disturbed phyllotaxy in the vegetative phase, suggesting that the function of this gene is closely associated with auxin action
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	auxin	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Consistent with these observations and the molecular function of Arabidopsis TPL, auxin signaling was also compromised in the rice asp1 mutant
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	anther	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Compared with wild type, the oslis-l1 mutant had abnormal male gametophyte formation, but anther cell wall and pollen wall development were not affected
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	dwarf	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Two independent alleles, designated oslis-l1-1 and oslis-l1-2, exhibited similar abnormal developmental phenotypes, including semi-dwarf, shorter panicle length, and reduced male fertility
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	panicle	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	OsLIS-L1 transcript is relatively highly abundant in stem and panicle and has a dynamic expression pattern at different panicle developmental stages
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	panicle	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Two independent alleles, designated oslis-l1-1 and oslis-l1-2, exhibited similar abnormal developmental phenotypes, including semi-dwarf, shorter panicle length, and reduced male fertility
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	panicle	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Histological analysis revealed that OsLIS-L1 regulates the cell proliferation in the first internode under the panicle
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	height	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	spikelet meristem	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Close examination revealed that regulation of meristem fate was compromised in asp1: degeneration of the inflorescence meristem was delayed, transition from the branch meristem to the spikelet meristem was accelerated, and stem cell maintenance in both the branch meristem and the spikelet meristem was compromised
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	stem	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Close examination revealed that regulation of meristem fate was compromised in asp1: degeneration of the inflorescence meristem was delayed, transition from the branch meristem to the spikelet meristem was accelerated, and stem cell maintenance in both the branch meristem and the spikelet meristem was compromised
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	stem	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	It is likely that the pleiotropic defects are associated with de-repression of multiple genes related to meristem function in the asp1 mutant
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	stem	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	OsLIS-L1 transcript is relatively highly abundant in stem and panicle and has a dynamic expression pattern at different panicle developmental stages
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	meiosis	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Cytological examination confirmed that OsLIS-L1 does not affect the meiosis in pollen mother cells
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	cell wall	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Compared with wild type, the oslis-l1 mutant had abnormal male gametophyte formation, but anther cell wall and pollen wall development were not affected
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	growth	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	The asp1 mutant also showed de-repression of axillary bud growth and disturbed phyllotaxy in the vegetative phase, suggesting that the function of this gene is closely associated with auxin action
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	panicle	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Here we analyzed a recessive mutant of rice, aberrant spikelet and panicle1 (asp1), that showed pleiotropic phenotypes such as a disorganized branching pattern, aberrant spikelet morphology, and disarrangement of phyllotaxy
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	fertility	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Here, we report the cloning and functional characterization of a novel rice gene OsLIS-L1 (Lissencephaly type-1-like 1), which is required for normal fertility and the first internode elongation
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	fertility	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice	Two independent alleles, designated oslis-l1-1 and oslis-l1-2, exhibited similar abnormal developmental phenotypes, including semi-dwarf, shorter panicle length, and reduced male fertility
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	inflorescence	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Close examination revealed that regulation of meristem fate was compromised in asp1: degeneration of the inflorescence meristem was delayed, transition from the branch meristem to the spikelet meristem was accelerated, and stem cell maintenance in both the branch meristem and the spikelet meristem was compromised
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	spikelet	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Here we analyzed a recessive mutant of rice, aberrant spikelet and panicle1 (asp1), that showed pleiotropic phenotypes such as a disorganized branching pattern, aberrant spikelet morphology, and disarrangement of phyllotaxy
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	spikelet	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Close examination revealed that regulation of meristem fate was compromised in asp1: degeneration of the inflorescence meristem was delayed, transition from the branch meristem to the spikelet meristem was accelerated, and stem cell maintenance in both the branch meristem and the spikelet meristem was compromised
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	stem	Transcriptional corepressor ASP1 and CLV-like signaling regulate meristem maintenance in rice.	These results suggest that ASP1 and FON2 synergistically regulate stem cell maintenance in rice
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	stem	Transcriptional corepressor ASP1 and CLV-like signaling regulate meristem maintenance in rice.	Taken together, our results suggest that TPL-like corepressor activity plays a crucial role in meristem maintenance, and that stem cell proliferation is properly maintained via the cooperation of ASP1 and FON2
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	meristem	Transcriptional corepressor ASP1 and CLV-like signaling regulate meristem maintenance in rice.	Transcriptional corepressor ASP1 and CLV-like signaling regulate meristem maintenance in rice.
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	meristem	Transcriptional corepressor ASP1 and CLV-like signaling regulate meristem maintenance in rice.	Taken together, our results suggest that TPL-like corepressor activity plays a crucial role in meristem maintenance, and that stem cell proliferation is properly maintained via the cooperation of ASP1 and FON2
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	inflorescence	Transcriptional corepressor ASP1 and CLV-like signaling regulate meristem maintenance in rice.	In the fon2 asp1 double mutant, the inflorescence was severely affected, resulting in bifurcation of the main axis (rachis), a phenotype that has not previously been reported
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	cell proliferation	Transcriptional corepressor ASP1 and CLV-like signaling regulate meristem maintenance in rice.	Taken together, our results suggest that TPL-like corepressor activity plays a crucial role in meristem maintenance, and that stem cell proliferation is properly maintained via the cooperation of ASP1 and FON2
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	panicle	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	A mutant, named as asp-lsl (aberrant spikelet-long sterile lemma), showed a significant decrease in plant height, number of tillers, thousand-grains weight, seed setting rate, spikelet length, kernel length and effective number of grains per panicle as compared to WT
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	spikelet	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	A mutant, named as asp-lsl (aberrant spikelet-long sterile lemma), showed a significant decrease in plant height, number of tillers, thousand-grains weight, seed setting rate, spikelet length, kernel length and effective number of grains per panicle as compared to WT
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	grains per panicle	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	A mutant, named as asp-lsl (aberrant spikelet-long sterile lemma), showed a significant decrease in plant height, number of tillers, thousand-grains weight, seed setting rate, spikelet length, kernel length and effective number of grains per panicle as compared to WT
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	seed	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	A mutant, named as asp-lsl (aberrant spikelet-long sterile lemma), showed a significant decrease in plant height, number of tillers, thousand-grains weight, seed setting rate, spikelet length, kernel length and effective number of grains per panicle as compared to WT
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	iaa	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	The endogenous contents of GA, CTK, and IAA were found significantly decreased in asp-lsl as compared to WT
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	nucleus	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	Subcellular localization of ASP-LSL revealed that its protein is localized in the nucleus
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	lemma	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	lemma	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	Asp-lsl showed a pleiotropic phenotype coupled with the obvious presence of a long sterile lemma
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	sterile	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	sterile	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	A mutant, named as asp-lsl (aberrant spikelet-long sterile lemma), showed a significant decrease in plant height, number of tillers, thousand-grains weight, seed setting rate, spikelet length, kernel length and effective number of grains per panicle as compared to WT
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	sterile	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	Asp-lsl showed a pleiotropic phenotype coupled with the obvious presence of a long sterile lemma
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	plant height	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	A mutant, named as asp-lsl (aberrant spikelet-long sterile lemma), showed a significant decrease in plant height, number of tillers, thousand-grains weight, seed setting rate, spikelet length, kernel length and effective number of grains per panicle as compared to WT
OsTPL|ASP1|OsLIS-L1|ASP-LSL	Os08g0162100	LOC_Os08g06480	IAA	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice	The endogenous contents of GA, CTK, and IAA were found significantly decreased in asp-lsl as compared to WT
OsTPP1	Os02g0661100	LOC_Os02g44230	ABA	Functional identification of a trehalose 6-phosphate phosphatase gene that is involved in transient induction of trehalose biosynthesis during chilling stress in rice	Application of exogenous ABA (50 microM) resulted in a transient increase of OsTPP1 expression within 20 min of the treatment, thereby suggesting involvement of ABA in OsTPP1 gene regulation
OsTPP1	Os02g0661100	LOC_Os02g44230	cold stress	Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes	Expression analysis demonstrated that OsTPP1 was initially and transiently up-regulated after salt, osmotic and abscisic acid (ABA) treatments but slowly up-regulated under cold stress
OsTPP1	Os02g0661100	LOC_Os02g44230	cold stress	Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes	OsTPP1 overexpression in rice enhanced tolerance to salt and cold stress
OsTPP1	Os02g0661100	LOC_Os02g44230	salt	Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes	Expression analysis demonstrated that OsTPP1 was initially and transiently up-regulated after salt, osmotic and abscisic acid (ABA) treatments but slowly up-regulated under cold stress
OsTPP1	Os02g0661100	LOC_Os02g44230	salt	Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes	OsTPP1 overexpression in rice enhanced tolerance to salt and cold stress
OsTPP1	Os02g0661100	LOC_Os02g44230	shoot	Functional identification of a trehalose 6-phosphate phosphatase gene that is involved in transient induction of trehalose biosynthesis during chilling stress in rice	Northern blots revealed that the OsTPP1 transcript levels were fairly low or under detectable limits in most of the tissues under ambient conditions but were highly induced within 1-2 h of chilling stress (12 degrees C) in both root and shoot tissues of seedlings
OsTPP1	Os02g0661100	LOC_Os02g44230	abiotic stress	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice	Real-time PCR analysis revealed that some abiotic stress-related genes, such as OsLEA3, OsTPP1, Rab25, gp1 precursor, beta-gal, LOC_Os05g11910 and LOC_Os05g39250, were down-regulated in OsbZIP52 overexpression lines
OsTPP1	Os02g0661100	LOC_Os02g44230	root	Functional identification of a trehalose 6-phosphate phosphatase gene that is involved in transient induction of trehalose biosynthesis during chilling stress in rice	Northern blots revealed that the OsTPP1 transcript levels were fairly low or under detectable limits in most of the tissues under ambient conditions but were highly induced within 1-2 h of chilling stress (12 degrees C) in both root and shoot tissues of seedlings
OsTPP1	Os02g0661100	LOC_Os02g44230	temperature	Functional identification of a trehalose 6-phosphate phosphatase gene that is involved in transient induction of trehalose biosynthesis during chilling stress in rice	Transient expression of OsTPP1 was also induced under severe chilling stress (4 degrees C) as well as salinity and drought stresses at ambient temperatures
OsTPP1	Os02g0661100	LOC_Os02g44230	vegetative	Biochemical characterization of rice trehalose-6-phosphate phosphatases supports distinctive functions of these plant enzymes	Here we report that OsTPP1 and OsTPP2 are the two major trehalose-6-phosphate phosphatase genes expressed in vegetative tissues of rice
OsTPP1	Os02g0661100	LOC_Os02g44230	chilling	Functional identification of a trehalose 6-phosphate phosphatase gene that is involved in transient induction of trehalose biosynthesis during chilling stress in rice	Northern blots revealed that the OsTPP1 transcript levels were fairly low or under detectable limits in most of the tissues under ambient conditions but were highly induced within 1-2 h of chilling stress (12 degrees C) in both root and shoot tissues of seedlings
OsTPP1	Os02g0661100	LOC_Os02g44230	chilling	Functional identification of a trehalose 6-phosphate phosphatase gene that is involved in transient induction of trehalose biosynthesis during chilling stress in rice	Transient expression of OsTPP1 was also induced under severe chilling stress (4 degrees C) as well as salinity and drought stresses at ambient temperatures
OsTPP1	Os02g0661100	LOC_Os02g44230	salinity	Functional identification of a trehalose 6-phosphate phosphatase gene that is involved in transient induction of trehalose biosynthesis during chilling stress in rice	Transient expression of OsTPP1 was also induced under severe chilling stress (4 degrees C) as well as salinity and drought stresses at ambient temperatures
OsTPP1	Os02g0661100	LOC_Os02g44230	abiotic stress	Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes	Analysis of the overexpression lines revealed that OsTPP1 triggered abiotic stress response genes, which suggests a possible transcriptional regulation pathway in stress induced reprogramming initiated by OsTPP1
OsTPP1	Os02g0661100	LOC_Os02g44230	abiotic stress	Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes	The current study revealed the mechanism of an OsTPP gene involved in stress tolerance in rice and also suggested the use of OsTPP1 in abiotic stress engineering of crops
OsTPP1	Os02g0661100	LOC_Os02g44230	seedling	Functional identification of a trehalose 6-phosphate phosphatase gene that is involved in transient induction of trehalose biosynthesis during chilling stress in rice	Northern blots revealed that the OsTPP1 transcript levels were fairly low or under detectable limits in most of the tissues under ambient conditions but were highly induced within 1-2 h of chilling stress (12 degrees C) in both root and shoot tissues of seedlings
OsTPP1	Os02g0661100	LOC_Os02g44230	drought	Functional identification of a trehalose 6-phosphate phosphatase gene that is involved in transient induction of trehalose biosynthesis during chilling stress in rice	Transient expression of OsTPP1 was also induced under severe chilling stress (4 degrees C) as well as salinity and drought stresses at ambient temperatures
OsTPP1	Os02g0661100	LOC_Os02g44230	resistance	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	Under chilling stress, active OsMAPK3 phosphorylates OsbHLH002, leading to accumulation of phospho-OsbHLH002, which promotes OsTPP1 expression and increases trehalose content and resistance to chilling damage
OsTPP1	Os02g0661100	LOC_Os02g44230	stress	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	<U+00A0>Taken together, these results indicate that OsbHLH002 is phosphorylated by OsMAPK3, which enhances OsbHLH002 activation to its target OsTPP1 during chilling stress
OsTPP1	Os02g0661100	LOC_Os02g44230	chilling	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.
OsTPP1	Os02g0661100	LOC_Os02g44230	chilling	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	Under chilling stress, active OsMAPK3 phosphorylates OsbHLH002, leading to accumulation of phospho-OsbHLH002, which promotes OsTPP1 expression and increases trehalose content and resistance to chilling damage
OsTPP1	Os02g0661100	LOC_Os02g44230	chilling	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	<U+00A0>Taken together, these results indicate that OsbHLH002 is phosphorylated by OsMAPK3, which enhances OsbHLH002 activation to its target OsTPP1 during chilling stress
OsTPP1	Os02g0661100	LOC_Os02g44230	seed	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice
OsTPP1	Os02g0661100	LOC_Os02g44230	seed	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> In this study, roles of OsTPP1 on seed germination in rice were investigated
OsTPP1	Os02g0661100	LOC_Os02g44230	seed	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	In addition, ABA responsive genes, especially OsABI5, were invoved in OsTPP1 mediated seed germination
OsTPP1	Os02g0661100	LOC_Os02g44230	seed	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> Overall, our study provided new pathways in seed germination that OsTPP1 controlled seed germination through the crosstalk with ABA catabolism pathway
OsTPP1	Os02g0661100	LOC_Os02g44230	seed germination	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice
OsTPP1	Os02g0661100	LOC_Os02g44230	seed germination	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> In this study, roles of OsTPP1 on seed germination in rice were investigated
OsTPP1	Os02g0661100	LOC_Os02g44230	seed germination	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	In addition, ABA responsive genes, especially OsABI5, were invoved in OsTPP1 mediated seed germination
OsTPP1	Os02g0661100	LOC_Os02g44230	seed germination	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> Overall, our study provided new pathways in seed germination that OsTPP1 controlled seed germination through the crosstalk with ABA catabolism pathway
OsTPP1	Os02g0661100	LOC_Os02g44230	ABA	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	Furthermore, two of ABA catabolism genes were downregulated in tpp1 mutant which were responsible for increased ABA levels, and exogenous trehalose increased transcripts of ABA catabolism genes, suggesting that OsTPP1 and ABA catabolism genes acted in the same signaling pathway
OsTPP1	Os02g0661100	LOC_Os02g44230	ABA	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	In addition, ABA responsive genes, especially OsABI5, were invoved in OsTPP1 mediated seed germination
OsTPP1	Os02g0661100	LOC_Os02g44230	ABA	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> Overall, our study provided new pathways in seed germination that OsTPP1 controlled seed germination through the crosstalk with ABA catabolism pathway
OsTPP1	Os02g0661100	LOC_Os02g44230	abscisic acid	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice
OsTPP1	Os02g0661100	LOC_Os02g44230	ABA	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	Furthermore, two of ABA catabolism genes were downregulated in tpp1 mutant which were responsible for increased ABA levels, and exogenous trehalose increased transcripts of ABA catabolism genes, suggesting that OsTPP1 and ABA catabolism genes acted in the same signaling pathway
OsTPP1	Os02g0661100	LOC_Os02g44230	ABA	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	In addition, ABA responsive genes, especially OsABI5, were invoved in OsTPP1 mediated seed germination
OsTPP1	Os02g0661100	LOC_Os02g44230	ABA	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> Overall, our study provided new pathways in seed germination that OsTPP1 controlled seed germination through the crosstalk with ABA catabolism pathway
OsTPP1	Os02g0661100	LOC_Os02g44230	ABA catabolism	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	Furthermore, two of ABA catabolism genes were downregulated in tpp1 mutant which were responsible for increased ABA levels, and exogenous trehalose increased transcripts of ABA catabolism genes, suggesting that OsTPP1 and ABA catabolism genes acted in the same signaling pathway
OsTPP1	Os02g0661100	LOC_Os02g44230	ABA catabolism	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice	<U+2022> Overall, our study provided new pathways in seed germination that OsTPP1 controlled seed germination through the crosstalk with ABA catabolism pathway
OsTPP2	Os06g0222100	LOC_Os06g11840	abiotic stress	Biochemical characterization of rice trehalose-6-phosphate phosphatases supports distinctive functions of these plant enzymes	OsTPP2 expression is transiently induced in response to chilling and other abiotic stresses
OsTPP2	Os06g0222100	LOC_Os06g11840	chilling	Biochemical characterization of rice trehalose-6-phosphate phosphatases supports distinctive functions of these plant enzymes	OsTPP2 expression is transiently induced in response to chilling and other abiotic stresses
OsTPP2	Os06g0222100	LOC_Os06g11840	vegetative	Biochemical characterization of rice trehalose-6-phosphate phosphatases supports distinctive functions of these plant enzymes	Here we report that OsTPP1 and OsTPP2 are the two major trehalose-6-phosphate phosphatase genes expressed in vegetative tissues of rice
OsTPP7|AG1	Os09g0369400	LOC_Os09g20390	growth	A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice.	OsTPP7 activity may increase sink strength in proliferating heterotrophic tissues by indicating low sugar availability through increased T6P turnover, thus enhancing starch mobilization to drive growth kinetics of the germinating embryo and elongating coleoptile, which consequently enhances anaerobic germination tolerance
OsTPP7|AG1	Os09g0369400	LOC_Os09g20390	starch	A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice.	OsTPP7 activity may increase sink strength in proliferating heterotrophic tissues by indicating low sugar availability through increased T6P turnover, thus enhancing starch mobilization to drive growth kinetics of the germinating embryo and elongating coleoptile, which consequently enhances anaerobic germination tolerance
OsTPP7|AG1	Os09g0369400	LOC_Os09g20390	tolerance	A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice.	OsTPP7 activity may increase sink strength in proliferating heterotrophic tissues by indicating low sugar availability through increased T6P turnover, thus enhancing starch mobilization to drive growth kinetics of the germinating embryo and elongating coleoptile, which consequently enhances anaerobic germination tolerance
OsTPP7|AG1	Os09g0369400	LOC_Os09g20390	sugar	A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice.	OsTPP7 activity may increase sink strength in proliferating heterotrophic tissues by indicating low sugar availability through increased T6P turnover, thus enhancing starch mobilization to drive growth kinetics of the germinating embryo and elongating coleoptile, which consequently enhances anaerobic germination tolerance
OsTPP7|AG1	Os09g0369400	LOC_Os09g20390	sucrose	A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice.	OsTPP7 is involved in trehalose-6-phosphate (T6P) metabolism, central to an energy sensor that determines anabolism or catabolism depending on local sucrose availability(8,9)
OsTPP7|AG1	Os09g0369400	LOC_Os09g20390	submergence	Flood resilience loci SUBMERGENCE 1 and ANAEROBIC GERMINATION 1 interact in seedlings established underwater	However, the pyramided AG1 SUB1 genotype displays reduced survival when seeds are planted underwater and maintained under submergence for 16 d
OsTPR	Os02g0741500	LOC_Os02g50799	grain	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.
OsTPR	Os02g0741500	LOC_Os02g50799	grain	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.	This confirmed a critical role for OsTPR in influencing yield while maintaining grain and nutritional quality
OsTPR	Os02g0741500	LOC_Os02g50799	quality	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.
OsTPR	Os02g0741500	LOC_Os02g50799	quality	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.	This confirmed a critical role for OsTPR in influencing yield while maintaining grain and nutritional quality
OsTPR	Os02g0741500	LOC_Os02g50799	yield	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.	Through haplotype mining, we further demonstrated the synergy of offering added yield advantage due to superior allele of OsTPR in elite materials with low glycaemic index (GI) property
OsTPR	Os02g0741500	LOC_Os02g50799	yield	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.	This confirmed a critical role for OsTPR in influencing yield while maintaining grain and nutritional quality
OsTPR	Os02g0741500	LOC_Os02g50799	grain quality	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.
OsTPR	Os02g0741500	LOC_Os02g50799	nutritional quality	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.	This confirmed a critical role for OsTPR in influencing yield while maintaining grain and nutritional quality
OsTPR075	Os03g0200600	LOC_Os03g10350	florigen transport	The tetratricopeptide repeat protein OsTPR075 promotes heading by regulating florigen transport in rice.	The tetratricopeptide repeat protein OsTPR075 promotes heading by regulating florigen transport in rice.
OsTPR075	Os03g0200600	LOC_Os03g10350	florigen transport	The tetratricopeptide repeat protein OsTPR075 promotes heading by regulating florigen transport in rice.	 Our findings suggest that florigen transport in rice is mediated by different OsFTIPs under different photoperiods and that interactions between OsTPR075 and OsFTIPs are essential for mediating florigen movement from leaves to the SAM
OsTPR1	Os10g0486900	LOC_Os10g34540	immune response	Binding of the Magnaporthe oryzae chitinase MoChia1 by a rice tetratricopeptide repeat protein allows free chitin to trigger immune responses.	OsTPR1 competitively binds MoChia1, thereby allowing the accumulation of free chitin and re-establishing the immune response
OsTPR1	Os10g0486900	LOC_Os10g34540	reactive oxygen species	Binding of the Magnaporthe oryzae chitinase MoChia1 by a rice tetratricopeptide repeat protein allows free chitin to trigger immune responses.	Overexpressing OsTPR1 in rice plants resulted in elevated levels of reactive oxygen species during M
OsTPS1	Os05g0518600	LOC_Os05g44210	seedling	Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice	To demonstrate the physiological function of OsTPS1, we introduced it into rice and found that OsTPS1 overexpression improved the tolerance of rice seedling to cold, high salinity and drought treatments without other significant phenotypic changes
OsTPS1	Os05g0518600	LOC_Os05g44210	salinity	Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice	To demonstrate the physiological function of OsTPS1, we introduced it into rice and found that OsTPS1 overexpression improved the tolerance of rice seedling to cold, high salinity and drought treatments without other significant phenotypic changes
OsTPS1	Os05g0518600	LOC_Os05g44210	drought	Characterization of a drought-responsive gene, OsTPS1, identified by the T-DNA gene-trap system in rice	Reverse transcriptase-PCR analysis of OsTPS1 showed that OsTPS1 is inducible by drought, salt, cold, and ABA
OsTPS1	Os05g0518600	LOC_Os05g44210	drought	Characterization of a drought-responsive gene, OsTPS1, identified by the T-DNA gene-trap system in rice	Leaves of OsTPS1 knockout (KO) plants were more sensitive to drought or cold stress than were the wild types
OsTPS1	Os05g0518600	LOC_Os05g44210	drought	Characterization of a drought-responsive gene, OsTPS1, identified by the T-DNA gene-trap system in rice	Characterization of a drought-responsive gene, OsTPS1, identified by the T-DNA gene-trap system in rice
OsTPS1	Os05g0518600	LOC_Os05g44210	abiotic stress	Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice	These results demonstrate that OsTPS1 may enhance the abiotic stress tolerance of plants by increasing the amount of trehalose and proline, and regulating the expression of stress-related genes
OsTPS1	Os05g0518600	LOC_Os05g44210	abiotic stress	Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice	Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice
OsTPS1	Os05g0518600	LOC_Os05g44210	abiotic stress	Characterization of a drought-responsive gene, OsTPS1, identified by the T-DNA gene-trap system in rice	Therefore, we propose that OsTPS1 plays an important role during the abiotic stress response
OsTPS1	Os05g0518600	LOC_Os05g44210	drought	Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice	To demonstrate the physiological function of OsTPS1, we introduced it into rice and found that OsTPS1 overexpression improved the tolerance of rice seedling to cold, high salinity and drought treatments without other significant phenotypic changes
OsTPS1	Os05g0518600	LOC_Os05g44210	cold stress	Characterization of a drought-responsive gene, OsTPS1, identified by the T-DNA gene-trap system in rice	Leaves of OsTPS1 knockout (KO) plants were more sensitive to drought or cold stress than were the wild types
OsTPS1	Os05g0518600	LOC_Os05g44210	salt	Characterization of a drought-responsive gene, OsTPS1, identified by the T-DNA gene-trap system in rice	Reverse transcriptase-PCR analysis of OsTPS1 showed that OsTPS1 is inducible by drought, salt, cold, and ABA
OsTPS1	Os05g0518600	LOC_Os05g44210	transcription factor	Characterization of a drought-responsive gene, OsTPS1, identified by the T-DNA gene-trap system in rice	Furthermore, transgenic rice of UBI::CBF1 had high expression OsTPS1 mRNA, suggesting that OsTPS1 is regulated by the CBF/DREB transcription factor
OsTPS1	Os05g0518600	LOC_Os05g44210	resistance	Disease resistance conferred by components of essential chrysanthemum oil and the epigenetic regulation of OsTPS1.	 Further experiments demonstrated that the natural variation in the disease resistance level was associated with differential transcription of OsTPS1 due to polymorphisms in its promoter
OsTPS1	Os05g0518600	LOC_Os05g44210	jasmonate	Disease resistance conferred by components of essential chrysanthemum oil and the epigenetic regulation of OsTPS1.	 We demonstrated that OsTPS1 was regulated at the epigenetic level by JMJ705 through the methyl jasmonate pathway
OsTPS1	Os05g0518600	LOC_Os05g44210	disease	Disease resistance conferred by components of essential chrysanthemum oil and the epigenetic regulation of OsTPS1.	 Further experiments demonstrated that the natural variation in the disease resistance level was associated with differential transcription of OsTPS1 due to polymorphisms in its promoter
OsTPS1	Os05g0518600	LOC_Os05g44210	disease resistance	Disease resistance conferred by components of essential chrysanthemum oil and the epigenetic regulation of OsTPS1.	 Further experiments demonstrated that the natural variation in the disease resistance level was associated with differential transcription of OsTPS1 due to polymorphisms in its promoter
OsTPS1	Os05g0518600	LOC_Os05g44210	methyl jasmonate	Disease resistance conferred by components of essential chrysanthemum oil and the epigenetic regulation of OsTPS1.	 We demonstrated that OsTPS1 was regulated at the epigenetic level by JMJ705 through the methyl jasmonate pathway
OsTPS19	Os04g0340300	LOC_Os04g27190	resistance	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.
OsTPS19	Os04g0340300	LOC_Os04g27190	resistance	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.	Overexpression of OsTPS19 in rice plants enhanced resistance against M
OsTPS19	Os04g0340300	LOC_Os04g27190	defense	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.	oryzae, a terpene synthase gene OsTPS19 was identified as a candidate defense gene
OsTPS19	Os04g0340300	LOC_Os04g27190	defense	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.	OsTPS19 was determined to function as an (S)-limonene synthase in rice and plays a role in defense against M
OsTPS19	Os04g0340300	LOC_Os04g27190	blast	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.
OsTPS19	Os04g0340300	LOC_Os04g27190	magnaporthe oryzae	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.
OsTPS19	Os04g0340300	LOC_Os04g27190	pathogen	The Rice Terpene Synthase Gene OsTPS19 Functions as an (S)-Limonene Synthase in planta and its Overexpression Leads to Enhanced Resistance to the Blast Fungus Magnaporthe oryzae.	oryzae, while OsTPS19 RNAi lines were more susceptible to the pathogen
OsTPS20	Os04g0341500	LOC_Os04g27340	oxidative stress	Rice terpene synthase 20 (OsTPS20) plays an important role in producing terpene volatiles in response to abiotic stresses.	Moreover, qRT-PCR revealed that the transcript levels of OsTPS20 were significantly induced in response to oxidative stress, thereby suggesting that OsTPS20 plays a major role in producing terpene volatiles during abiotic stress
OsTPS20	Os04g0341500	LOC_Os04g27340	oxidative	Rice terpene synthase 20 (OsTPS20) plays an important role in producing terpene volatiles in response to abiotic stresses.	Moreover, qRT-PCR revealed that the transcript levels of OsTPS20 were significantly induced in response to oxidative stress, thereby suggesting that OsTPS20 plays a major role in producing terpene volatiles during abiotic stress
OsTPS20	Os04g0341500	LOC_Os04g27340	abiotic stress	Rice terpene synthase 20 (OsTPS20) plays an important role in producing terpene volatiles in response to abiotic stresses.	Moreover, qRT-PCR revealed that the transcript levels of OsTPS20 were significantly induced in response to oxidative stress, thereby suggesting that OsTPS20 plays a major role in producing terpene volatiles during abiotic stress
OsTPS20	Os04g0341500	LOC_Os04g27340	stress	Rice terpene synthase 20 (OsTPS20) plays an important role in producing terpene volatiles in response to abiotic stresses.	Moreover, qRT-PCR revealed that the transcript levels of OsTPS20 were significantly induced in response to oxidative stress, thereby suggesting that OsTPS20 plays a major role in producing terpene volatiles during abiotic stress
OsTPS20	Os04g0341500	LOC_Os04g27340	biotic stress	Rice terpene synthase 20 (OsTPS20) plays an important role in producing terpene volatiles in response to abiotic stresses.	Moreover, qRT-PCR revealed that the transcript levels of OsTPS20 were significantly induced in response to oxidative stress, thereby suggesting that OsTPS20 plays a major role in producing terpene volatiles during abiotic stress
OsTPS3	Os01g0730300	LOC_Os01g53000	defense	The rice (E)-beta-caryophyllene synthase (OsTPS3) accounts for the major inducible volatile sesquiterpenes	These results demonstrate that OsTPS3, an enzyme catalyzing the formation of volatile sesquiterpenes, plays a role in indirect defense of rice plants
OsTPS3	Os01g0730300	LOC_Os01g53000	jasmonate	The rice (E)-beta-caryophyllene synthase (OsTPS3) accounts for the major inducible volatile sesquiterpenes	The transcript levels of OsTPS3 exhibit a circadian rhythm of fluctuation, and its expression was also greatly induced by methyl jasmonate (MeJA)
OsTPS8	Os08g0445700	LOC_Os08g34580	salinity	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	Overexpression of OsTPS8 was adequate to confer enhanced salinity tolerance without any yield penalty, suggesting its usefulness in rice genetic improvement
OsTPS8	Os08g0445700	LOC_Os08g34580	salt	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.
OsTPS8	Os08g0445700	LOC_Os08g34580	salt	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	The ostps8 mutant showed salt sensitivity, ABA sensitivity and altered agronomic traits compared to the wild-type (WT), which could be rescued upon complementation
OsTPS8	Os08g0445700	LOC_Os08g34580	tolerance	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.
OsTPS8	Os08g0445700	LOC_Os08g34580	tolerance	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	Overexpression of OsTPS8 was adequate to confer enhanced salinity tolerance without any yield penalty, suggesting its usefulness in rice genetic improvement
OsTPS8	Os08g0445700	LOC_Os08g34580	yield	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	Overexpression of OsTPS8 was adequate to confer enhanced salinity tolerance without any yield penalty, suggesting its usefulness in rice genetic improvement
OsTPS8	Os08g0445700	LOC_Os08g34580	ABA	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	The ostps8 mutant showed salt sensitivity, ABA sensitivity and altered agronomic traits compared to the wild-type (WT), which could be rescued upon complementation
OsTPS8	Os08g0445700	LOC_Os08g34580	ABA	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	Our results suggest that OsTPS8 may regulate suberin deposition in rice through ABA signalling
OsTPS8	Os08g0445700	LOC_Os08g34580	salt stress	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.
OsTPS8	Os08g0445700	LOC_Os08g34580	stress	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.
OsTPS8	Os08g0445700	LOC_Os08g34580	ABA	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	The ostps8 mutant showed salt sensitivity, ABA sensitivity and altered agronomic traits compared to the wild-type (WT), which could be rescued upon complementation
OsTPS8	Os08g0445700	LOC_Os08g34580	ABA	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	Our results suggest that OsTPS8 may regulate suberin deposition in rice through ABA signalling
OsTPS8	Os08g0445700	LOC_Os08g34580	abscisic acid	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	The ostps8 mutant was characterised by GC-MS analysis, an abscisic acid (ABA) sensitivity test and by generating transgenic lines
OsTPS8	Os08g0445700	LOC_Os08g34580	stress tolerance	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.
OsTPS8	Os08g0445700	LOC_Os08g34580	Salt Sensitivity	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	The ostps8 mutant showed salt sensitivity, ABA sensitivity and altered agronomic traits compared to the wild-type (WT), which could be rescued upon complementation
OsTRBF1	Os01g0589300	LOC_Os01g40670	telomere repeat-binding factor	Identification and characterization of three telomere repeat-binding factors in rice	Identification and characterization of three telomere repeat-binding factors in rice
OsTRBF2	Os12g0613300	LOC_Os12g41920	telomere repeat-binding factor	Identification and characterization of three telomere repeat-binding factors in rice	Identification and characterization of three telomere repeat-binding factors in rice
OsTRBF3	Os01g0708000	LOC_Os01g51154	telomere repeat-binding factor	Identification and characterization of three telomere repeat-binding factors in rice	Identification and characterization of three telomere repeat-binding factors in rice
OsTRE1	Os10g0521000	LOC_Os10g37660	resistance	Identification and Characterization of ABA-Responsive MicroRNAs in Rice.	Finally, miR162b and its target OsTRE1 were shown to affect rice resistance to drought stress, suggesting that miR162b increases resistance to drought by targeting OsTRE1
OsTRE1	Os10g0521000	LOC_Os10g37660	drought	Identification and Characterization of ABA-Responsive MicroRNAs in Rice.	Finally, miR162b and its target OsTRE1 were shown to affect rice resistance to drought stress, suggesting that miR162b increases resistance to drought by targeting OsTRE1
OsTRE1	Os10g0521000	LOC_Os10g37660	drought stress	Identification and Characterization of ABA-Responsive MicroRNAs in Rice.	Finally, miR162b and its target OsTRE1 were shown to affect rice resistance to drought stress, suggesting that miR162b increases resistance to drought by targeting OsTRE1
OsTRE1	Os10g0521000	LOC_Os10g37660	seedlings	Functional identification of a rice trehalase gene involved in salt stress tolerance.	An expression analysis in young seedlings revealed that OsTRE1 is induced by stresses such as salt, drought, and chilling
OsTRE1	Os10g0521000	LOC_Os10g37660	growth	Functional identification of a rice trehalase gene involved in salt stress tolerance.	The OsTRE1 overexpressors did not have notable morphological alterations or growth defects but exhibited enhanced salt tolerance, suggesting the involvement of OsTRE1 in salt stress tolerance in rice
OsTRE1	Os10g0521000	LOC_Os10g37660	salt	Functional identification of a rice trehalase gene involved in salt stress tolerance.	The OsTRE1 overexpressors did not have notable morphological alterations or growth defects but exhibited enhanced salt tolerance, suggesting the involvement of OsTRE1 in salt stress tolerance in rice
OsTRE1	Os10g0521000	LOC_Os10g37660	tolerance	Functional identification of a rice trehalase gene involved in salt stress tolerance.	The OsTRE1 overexpressors did not have notable morphological alterations or growth defects but exhibited enhanced salt tolerance, suggesting the involvement of OsTRE1 in salt stress tolerance in rice
OsTRE1	Os10g0521000	LOC_Os10g37660	ABA	Functional identification of a rice trehalase gene involved in salt stress tolerance.	ABA treatment also transiently upregulated OsTRE1 expression
OsTRE1	Os10g0521000	LOC_Os10g37660	salt tolerance	Functional identification of a rice trehalase gene involved in salt stress tolerance.	The OsTRE1 overexpressors did not have notable morphological alterations or growth defects but exhibited enhanced salt tolerance, suggesting the involvement of OsTRE1 in salt stress tolerance in rice
OsTRE1	Os10g0521000	LOC_Os10g37660	salt stress	Functional identification of a rice trehalase gene involved in salt stress tolerance.	The OsTRE1 overexpressors did not have notable morphological alterations or growth defects but exhibited enhanced salt tolerance, suggesting the involvement of OsTRE1 in salt stress tolerance in rice
OsTRE1	Os10g0521000	LOC_Os10g37660	stress	Functional identification of a rice trehalase gene involved in salt stress tolerance.	The OsTRE1 overexpressors did not have notable morphological alterations or growth defects but exhibited enhanced salt tolerance, suggesting the involvement of OsTRE1 in salt stress tolerance in rice
OsTRE1	Os10g0521000	LOC_Os10g37660	ABA	Functional identification of a rice trehalase gene involved in salt stress tolerance.	ABA treatment also transiently upregulated OsTRE1 expression
OsTRE1	Os10g0521000	LOC_Os10g37660	chilling	Functional identification of a rice trehalase gene involved in salt stress tolerance.	An expression analysis in young seedlings revealed that OsTRE1 is induced by stresses such as salt, drought, and chilling
OsTRE1	Os10g0521000	LOC_Os10g37660	stress tolerance	Functional identification of a rice trehalase gene involved in salt stress tolerance.	The OsTRE1 overexpressors did not have notable morphological alterations or growth defects but exhibited enhanced salt tolerance, suggesting the involvement of OsTRE1 in salt stress tolerance in rice
OsTRE1	Os10g0521000	LOC_Os10g37660	sucrose	Functional identification of a rice trehalase gene involved in salt stress tolerance.	Transgenic rice plants overexpressing OsTRE1 showed remarkable increases in trehalase activity and dramatic decreases in trehalose abundance compared with the wild type, with little change in the levels of other soluble sugars, such as glucose, fructose, and sucrose
OsTRM13	Os03g0833200	LOC_Os03g61750	salt	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.
OsTRM13	Os03g0833200	LOC_Os03g61750	salt	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	OsTRM13 transcript levels increased significantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus
OsTRM13	Os03g0833200	LOC_Os03g61750	salt	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	More importantly, OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance
OsTRM13	Os03g0833200	LOC_Os03g61750	tolerance	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.
OsTRM13	Os03g0833200	LOC_Os03g61750	tolerance	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	More importantly, OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance
OsTRM13	Os03g0833200	LOC_Os03g61750	ABA	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	OsTRM13 transcript levels increased significantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus
OsTRM13	Os03g0833200	LOC_Os03g61750	salt stress	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.
OsTRM13	Os03g0833200	LOC_Os03g61750	salt stress	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	OsTRM13 transcript levels increased significantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus
OsTRM13	Os03g0833200	LOC_Os03g61750	salt stress	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	More importantly, OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance
OsTRM13	Os03g0833200	LOC_Os03g61750	stress	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.
OsTRM13	Os03g0833200	LOC_Os03g61750	stress	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	OsTRM13 transcript levels increased significantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus
OsTRM13	Os03g0833200	LOC_Os03g61750	stress	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	More importantly, OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance
OsTRM13	Os03g0833200	LOC_Os03g61750	nucleus	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	OsTRM13 transcript levels increased significantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus
OsTRM13	Os03g0833200	LOC_Os03g61750	ABA	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	OsTRM13 transcript levels increased significantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus
OsTRM13	Os03g0833200	LOC_Os03g61750	stress tolerance	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.
OsTRM13	Os03g0833200	LOC_Os03g61750	stress tolerance	The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.	More importantly, OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	flowering time	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	Here, we observed that suppression of Oryza sativa Trithorax1 (OsTrx1), an ortholog of ATX1, delayed flowering time in rice (Oryza sativa)
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	flowering time	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	Our results suggest that OsTrx1 plays an important role in regulating flowering time in rice by modulating chromatin structure
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	height	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in ostrx1
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	grain number	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in ostrx1
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	flower	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	Here, we observed that suppression of Oryza sativa Trithorax1 (OsTrx1), an ortholog of ATX1, delayed flowering time in rice (Oryza sativa)
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	flower	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	Our results suggest that OsTrx1 plays an important role in regulating flowering time in rice by modulating chromatin structure
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	grain	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in ostrx1
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	heading date	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3	However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in ostrx1
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	heading date	OsHUB2 inhibits function of OsTrx1 in heading date in rice.	OsHUB2 inhibits function of OsTrx1 in heading date in rice.
OsTrx1|SDG723	Os09g0134500	LOC_Os09g04890	heading date	OsHUB2 inhibits function of OsTrx1 in heading date in rice.	 Together, our results (i) reveal that OsHUB2 represses the function of OsTrx1 and H3K4me3 levels at Ehd1 and (ii) suggest that OsHUB2-mediated H2B ubiquitination plays critical roles together with H3K4me3 in rice heading date regulation
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	tiller	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	The knockdown of OsTRXh1 results in dwarf plants with fewer tillers, whereas the overexpression of OsTRXh1 leads to a salt-sensitive phenotype in rice
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	seed germination	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	In addition, both the knockdown and overexpression of OsTRXh1 decrease abscisic acid sensitivity during seed germination and seedling growth
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	growth	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	In addition, both the knockdown and overexpression of OsTRXh1 decrease abscisic acid sensitivity during seed germination and seedling growth
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	salt	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	OsTRXh1 is ubiquitously expressed in rice, and its expression is induced by salt and abscisic acid treatments
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	salt	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	Intriguingly, OsTRXh1 is secreted into the extracellular space, and salt stress in the apoplast of rice induces its expression at the protein level
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	salt	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	The knockdown of OsTRXh1 results in dwarf plants with fewer tillers, whereas the overexpression of OsTRXh1 leads to a salt-sensitive phenotype in rice
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	salt	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	We also analyzed the levels of hydrogen peroxide produced in transgenic plants, and the results show that more hydrogen peroxide is produced in the extracellular space of OsTRXh1 knockdown plants than in wild-type plants, whereas the OsTRXh1 overexpression plants produce less hydrogen peroxide under salt stress
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	seed	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	In addition, both the knockdown and overexpression of OsTRXh1 decrease abscisic acid sensitivity during seed germination and seedling growth
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	salt stress	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	Intriguingly, OsTRXh1 is secreted into the extracellular space, and salt stress in the apoplast of rice induces its expression at the protein level
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	salt stress	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	We also analyzed the levels of hydrogen peroxide produced in transgenic plants, and the results show that more hydrogen peroxide is produced in the extracellular space of OsTRXh1 knockdown plants than in wild-type plants, whereas the OsTRXh1 overexpression plants produce less hydrogen peroxide under salt stress
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	dwarf	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	The knockdown of OsTRXh1 results in dwarf plants with fewer tillers, whereas the overexpression of OsTRXh1 leads to a salt-sensitive phenotype in rice
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	seedling	An apoplastic h-type thioredoxin is involved in the stress response through regulation of the apoplastic reactive oxygen species in rice	In addition, both the knockdown and overexpression of OsTRXh1 decrease abscisic acid sensitivity during seed germination and seedling growth
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	Pi	Two h-Type Thioredoxins Interact with the E2 Ubiquitin Conjugase PHO2 to Fine-Tune Phosphate Homeostasis in Rice.	Characterization of rice pho2 complemented lines, transformed with an endogenous genomic OsPHO2 or OsPHO2(C445S) (a constitutively reduced form) fragment, indicated that OsPHO2(C445S) restored Pi concentration in rice to statistically significant lower levels compared to native OsPHO2 Moreover, the suppression of OsTrxh1 (knockdown and knockout) resulted in slightly higher Pi concentration than that of wild-type Nipponbare in leaves
OsTrx23|OsTRXh1	Os07g0186000	LOC_Os07g08840	pi	Two h-Type Thioredoxins Interact with the E2 Ubiquitin Conjugase PHO2 to Fine-Tune Phosphate Homeostasis in Rice.	Characterization of rice pho2 complemented lines, transformed with an endogenous genomic OsPHO2 or OsPHO2(C445S) (a constitutively reduced form) fragment, indicated that OsPHO2(C445S) restored Pi concentration in rice to statistically significant lower levels compared to native OsPHO2 Moreover, the suppression of OsTrxh1 (knockdown and knockout) resulted in slightly higher Pi concentration than that of wild-type Nipponbare in leaves
OsTrxh2	Os05g0508500	LOC_Os05g43252	resistance	A bacterial F-box effector suppresses SAR immunity through mediating the proteasomal degradation of OsTrxh2 in rice	Although OsTrxh2 positively regulates rice immunity by catalyzing the dissociation of OsNPR1 into monomers in rice, the XopI effector serves as an F-box adapter to form an OSK1-XopI-OsTrxh2 interaction complex, and further disrupts OsNPR1-mediated resistance through proteasomal degradation of OsTrxh2
OsTrxh2	Os05g0508500	LOC_Os05g43252	resistance	A bacterial F-box effector suppresses SAR immunity through mediating the proteasomal degradation of OsTrxh2 in rice	Our results indicate that XopI targets OsTrxh2 and further represses OsNPR1-dependent signaling, thereby subverting systemic acquired resistance (SAR) immunity in rice
OsTrxh2	Os05g0508500	LOC_Os05g43252	immunity	A bacterial F-box effector suppresses SAR immunity through mediating the proteasomal degradation of OsTrxh2 in rice	A bacterial F-box effector suppresses SAR immunity through mediating the proteasomal degradation of OsTrxh2 in rice
OsTrxh2	Os05g0508500	LOC_Os05g43252	immunity	A bacterial F-box effector suppresses SAR immunity through mediating the proteasomal degradation of OsTrxh2 in rice	Although OsTrxh2 positively regulates rice immunity by catalyzing the dissociation of OsNPR1 into monomers in rice, the XopI effector serves as an F-box adapter to form an OSK1-XopI-OsTrxh2 interaction complex, and further disrupts OsNPR1-mediated resistance through proteasomal degradation of OsTrxh2
OsTrxh2	Os05g0508500	LOC_Os05g43252	immunity	A bacterial F-box effector suppresses SAR immunity through mediating the proteasomal degradation of OsTrxh2 in rice	Our results indicate that XopI targets OsTrxh2 and further represses OsNPR1-dependent signaling, thereby subverting systemic acquired resistance (SAR) immunity in rice
Ostrxm	Os12g0188700	LOC_Os12g08730	dwarf	Abnormal chloroplast development and growth inhibition in rice thioredoxin m knock-down plants	RNA interference (RNAi) of Ostrxm resulted in rice plants with developmental defects, including semidwarfism, pale-green leaves, abnormal chloroplast structure, and reduced carotenoid and chlorophyll content
Ostrxm	Os12g0188700	LOC_Os12g08730	photosynthesis	Abnormal chloroplast development and growth inhibition in rice thioredoxin m knock-down plants	Two-dimensional electrophoresis and matrix-assisted laser-desorption/ionization time-of-flight analysis showed that the levels of several chloroplast proteins critical for photosynthesis and biogenesis were significantly decreased in Ostrxm RNAi plants
Ostrxm	Os12g0188700	LOC_Os12g08730	chloroplast	Abnormal chloroplast development and growth inhibition in rice thioredoxin m knock-down plants	Ostrxm was localized in chloroplasts of rice mesophyll cells, and the recombinant protein showed dithiothreitol-dependent insulin beta-chain reduction activity in vitro
Ostrxm	Os12g0188700	LOC_Os12g08730	chloroplast	Abnormal chloroplast development and growth inhibition in rice thioredoxin m knock-down plants	RNA interference (RNAi) of Ostrxm resulted in rice plants with developmental defects, including semidwarfism, pale-green leaves, abnormal chloroplast structure, and reduced carotenoid and chlorophyll content
Ostrxm	Os12g0188700	LOC_Os12g08730	chloroplast	Abnormal chloroplast development and growth inhibition in rice thioredoxin m knock-down plants	Two-dimensional electrophoresis and matrix-assisted laser-desorption/ionization time-of-flight analysis showed that the levels of several chloroplast proteins critical for photosynthesis and biogenesis were significantly decreased in Ostrxm RNAi plants
Ostrxm	Os12g0188700	LOC_Os12g08730	chloroplast	Abnormal chloroplast development and growth inhibition in rice thioredoxin m knock-down plants	The pleiotropic effects of Ostrxm RNAi suggest that Ostrxm plays an important role in the redox regulation of chloroplast target proteins involved in diverse physiological functions
Ostrxm	Os12g0188700	LOC_Os12g08730	reactive oxygen species	Repressed OsMESL expression triggers reactive oxygen species mediated broad-spectrum disease resistance in rice	Protein interaction experiments revealed that OsMESL affects reactive oxygen species (ROS) accumulation by interacting with thioredoxin OsTrxm in rice
OsTRXZ|WP2	Os08g0378900	LOC_Os08g29110	cold stress	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	We demonstrated that TSV protects rice chloroplasts from cold stress by interacting with OsTrxZ
OsTRXZ|WP2	Os08g0378900	LOC_Os08g29110	stress	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	We demonstrated that TSV protects rice chloroplasts from cold stress by interacting with OsTrxZ
OsTRXZ|WP2	Os08g0378900	LOC_Os08g29110	temperature	White Panicle2 encoding thioredoxin z, regulates plastid RNA editing by interacting with Multiple Organellar RNA Editing Factors in rice	wp2 and Ostrx z knockout lines show reduced editing efficiencies in many plastidial-encoded genes especially under high temperature conditions
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	root	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	root	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	All three independent T-DNA insertion lines of OsTSD2 displayed dwarf phenotypes and serial alterations in different zones of the root
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	root	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	development	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	development	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	ABA	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	root development	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	root development	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	iaa	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	cell wall	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Biochemical analysis of cell wall pectin polysaccharides revealed that both the monosaccharide composition and the uronic acid content were decreased in Ostsd2 mutants
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	dwarf	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	All three independent T-DNA insertion lines of OsTSD2 displayed dwarf phenotypes and serial alterations in different zones of the root
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	methyltransferase	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	methyltransferase	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Here, we report the functional characterization of the OsTSD2 gene, which encodes a putative methyltransferase in rice
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	IAA	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	ABA	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	grain	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	Osqua2 mutants exhibit a remarkable decrease in the degree of methylesterification (DM) of HG in the culm-sieve element (SE) cell wall, and a markedly reduced grain yield
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	grain	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	These and other findings demonstrate that OsQUA2 is essential for maintaining a high DM of HG in the rice culm-SE cell wall, which may be critical for efficient sucrose partitioning and grain filling
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	grain yield	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	Osqua2 mutants exhibit a remarkable decrease in the degree of methylesterification (DM) of HG in the culm-sieve element (SE) cell wall, and a markedly reduced grain yield
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	yield	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	Osqua2 mutants exhibit a remarkable decrease in the degree of methylesterification (DM) of HG in the culm-sieve element (SE) cell wall, and a markedly reduced grain yield
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	culm	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	The culm of Osqua2 mutant plants contain excessive sucrose, and a 13CO2 feeding experiment showed that the sucrose over-accumulation in the culm was caused by blocked sucrose translocation
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	cell wall	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	Osqua2 mutants exhibit a remarkable decrease in the degree of methylesterification (DM) of HG in the culm-sieve element (SE) cell wall, and a markedly reduced grain yield
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	cell wall	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	These and other findings demonstrate that OsQUA2 is essential for maintaining a high DM of HG in the rice culm-SE cell wall, which may be critical for efficient sucrose partitioning and grain filling
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	cell wall	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	The identification and characterization of the OsQUA2 gene and its functionality revealed a previously unknown contribution of HG methylesterification and provided insight into how the modification of cell wall regulates the intercellular transport in plants
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	grain filling	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	These and other findings demonstrate that OsQUA2 is essential for maintaining a high DM of HG in the rice culm-SE cell wall, which may be critical for efficient sucrose partitioning and grain filling
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	methyltransferase	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	Here, we identified and characterized knockout mutants of the OsQUA2 gene encoding a putative pectin methyltransferase (PMT)
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	sucrose	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	The culm of Osqua2 mutant plants contain excessive sucrose, and a 13CO2 feeding experiment showed that the sucrose over-accumulation in the culm was caused by blocked sucrose translocation
OsTSD2|OsQUA2	Os02g0755000	LOC_Os02g51860	sucrose	Rice sucrose partitioning mediated by a putative pectin methyltransferase and homogalacturonan methylesterification.	These and other findings demonstrate that OsQUA2 is essential for maintaining a high DM of HG in the rice culm-SE cell wall, which may be critical for efficient sucrose partitioning and grain filling
OsTT1|OsPAB1	Os03g0387100	LOC_Os03g26970	stress	Natural alleles of a proteasome α2 subunit gene contribute to thermotolerance and adaptation of African rice.	Ubiquitylome analysis indicated that OgTT1 protects cells from heat stress through more efficient elimination of cytotoxic denatured proteins and more effective maintenance of heat-response processes than achieved with OsTT1
OsTTG1	Os02g0682500	LOC_Os02g45810	transcription factor	RNA-seq reveals transcriptional differences in anthocyanin and vitamin biosynthetic pathways between black and white rice.	 Among 58 differentially expressed transcription factors, OsTTG1 was confirmed to be the one and only WD40 repeat protein regulating anthocyanin biosynthesis in the pericarp
OsTTG1	Os02g0682500	LOC_Os02g45810	pericarp	RNA-seq reveals transcriptional differences in anthocyanin and vitamin biosynthetic pathways between black and white rice.	 Among 58 differentially expressed transcription factors, OsTTG1 was confirmed to be the one and only WD40 repeat protein regulating anthocyanin biosynthesis in the pericarp
OsTTL	Os03g0390700	LOC_Os03g27320	Kinase	Identification of a key locus, qNL3.1, associated with seed germination under salt stress via a genome-wide association study in rice.	 Analysis of candidate genes showed that two genes, the similar to transthyretin-like protein OsTTL and the serine/threonine protein kinase OsSAPK1, were the causal genes of qNL3
OsTTL	Os03g0390700	LOC_Os03g27320	kinase	Identification of a key locus, qNL3.1, associated with seed germination under salt stress via a genome-wide association study in rice.	 Analysis of candidate genes showed that two genes, the similar to transthyretin-like protein OsTTL and the serine/threonine protein kinase OsSAPK1, were the causal genes of qNL3
OsTTL	Os03g0390700	LOC_Os03g27320	stress	Identification of a key locus, qNL3.1, associated with seed germination under salt stress via a genome-wide association study in rice.	 Germination tests indicated that both Osttl and Ossapk1 mutants significantly reduced seed germination under salt stress compared to the wild type
OsTTL	Os03g0390700	LOC_Os03g27320	seed	Identification of a key locus, qNL3.1, associated with seed germination under salt stress via a genome-wide association study in rice.	 Germination tests indicated that both Osttl and Ossapk1 mutants significantly reduced seed germination under salt stress compared to the wild type
OsTTL	Os03g0390700	LOC_Os03g27320	salt	Identification of a key locus, qNL3.1, associated with seed germination under salt stress via a genome-wide association study in rice.	 Germination tests indicated that both Osttl and Ossapk1 mutants significantly reduced seed germination under salt stress compared to the wild type
OsTTL	Os03g0390700	LOC_Os03g27320	seed germination	Identification of a key locus, qNL3.1, associated with seed germination under salt stress via a genome-wide association study in rice.	 Germination tests indicated that both Osttl and Ossapk1 mutants significantly reduced seed germination under salt stress compared to the wild type
OsTTL	Os03g0390700	LOC_Os03g27320	salt stress	Identification of a key locus, qNL3.1, associated with seed germination under salt stress via a genome-wide association study in rice.	 Germination tests indicated that both Osttl and Ossapk1 mutants significantly reduced seed germination under salt stress compared to the wild type
OsTTL	Os03g0390700	LOC_Os03g27320	protein kinase	Identification of a key locus, qNL3.1, associated with seed germination under salt stress via a genome-wide association study in rice.	 Analysis of candidate genes showed that two genes, the similar to transthyretin-like protein OsTTL and the serine/threonine protein kinase OsSAPK1, were the causal genes of qNL3
OsTTLL12	Os03g0179000	LOC_Os03g08140	growth	A rice tubulin tyrosine ligase-like 12 protein affects the dynamic and orientation of microtubules.	 Thus, the elevated tubulin detyrosination in consequence of OsTTLL12 overexpression affects structural and dynamic features of microtubules, followed by changes in the axiality of cell plate deposition and, consequently, plant growth
OsTTLL12	Os03g0179000	LOC_Os03g08140	plant growth	A rice tubulin tyrosine ligase-like 12 protein affects the dynamic and orientation of microtubules.	 Thus, the elevated tubulin detyrosination in consequence of OsTTLL12 overexpression affects structural and dynamic features of microtubules, followed by changes in the axiality of cell plate deposition and, consequently, plant growth
OsTTLL12	Os03g0179000	LOC_Os03g08140	tubulin	A rice tubulin tyrosine ligase like 12 regulates phospholipase D activity and tubulin synthesis	A rice tubulin tyrosine ligase like 12 regulates phospholipase D activity and tubulin synthesis
OsTTLL12	Os03g0179000	LOC_Os03g08140	tubulin synthesis	A rice tubulin tyrosine ligase like 12 regulates phospholipase D activity and tubulin synthesis	A rice tubulin tyrosine ligase like 12 regulates phospholipase D activity and tubulin synthesis
OsTTLL12	Os03g0179000	LOC_Os03g08140	phospholipase D activity	A rice tubulin tyrosine ligase like 12 regulates phospholipase D activity and tubulin synthesis	A rice tubulin tyrosine ligase like 12 regulates phospholipase D activity and tubulin synthesis
OsTUB1	Os01g0282800	LOC_Os01g18050	salt	OsTUB1 confers salt insensitivity by interacting with Kinesin13A to stabilize microtubules and ion transporters in rice.	OsTUB1 confers salt insensitivity by interacting with Kinesin13A to stabilize microtubules and ion transporters in rice.
OsTUB1	Os01g0282800	LOC_Os01g18050	salt	OsTUB1 confers salt insensitivity by interacting with Kinesin13A to stabilize microtubules and ion transporters in rice.	 We found that OsTUB1 interacted with Kinesin13A protein, which was essential for OsTUB1-regulated MT organization under salt stress
OsTUB1	Os01g0282800	LOC_Os01g18050	salt stress	OsTUB1 confers salt insensitivity by interacting with Kinesin13A to stabilize microtubules and ion transporters in rice.	 We found that OsTUB1 interacted with Kinesin13A protein, which was essential for OsTUB1-regulated MT organization under salt stress
OsTUB1	Os01g0282800	LOC_Os01g18050	stress	OsTUB1 confers salt insensitivity by interacting with Kinesin13A to stabilize microtubules and ion transporters in rice.	 We found that OsTUB1 interacted with Kinesin13A protein, which was essential for OsTUB1-regulated MT organization under salt stress
OsTUB8	Os03g0661300	LOC_Os03g45920	seed	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	Transgenic rice expressing OsTUB8 in an antisense orientation were suppressed in the amount of seed set upon maturity
OsTUB8	Os03g0661300	LOC_Os03g45920	seed	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	These results suggest that OsTUB8 might be differentially expressed in rice anthers due to the action of GA, and involved in the processes of vegetative growth and seed set in rice
OsTUB8	Os03g0661300	LOC_Os03g45920	anther	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	OsTUB8 that was expressed in rice anthers was characterized with a multi-level approach
OsTUB8	Os03g0661300	LOC_Os03g45920	anther	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	At the protein level, OsTUB8 was expressed mainly in anthers compared to callus, root, leaf sheath and leaf blade
OsTUB8	Os03g0661300	LOC_Os03g45920	anther	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	In situ hybridization and GUS fusion analysis revealed that OsTUB8 was expressed in vascular bundles of anther filaments and in pollen
OsTUB8	Os03g0661300	LOC_Os03g45920	anther	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	OsTUB8 expression was lower in the anthers of GA-deficient mutants, ‘Tanginbozu and ‘Akibrarewaisei, compared to those of their respective wild types
OsTUB8	Os03g0661300	LOC_Os03g45920	anther	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	These results suggest that OsTUB8 might be differentially expressed in rice anthers due to the action of GA, and involved in the processes of vegetative growth and seed set in rice
OsTUB8	Os03g0661300	LOC_Os03g45920	anther	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice
OsTUB8	Os03g0661300	LOC_Os03g45920	vegetative	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	These results suggest that OsTUB8 might be differentially expressed in rice anthers due to the action of GA, and involved in the processes of vegetative growth and seed set in rice
OsTUB8	Os03g0661300	LOC_Os03g45920	leaf	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	At the protein level, OsTUB8 was expressed mainly in anthers compared to callus, root, leaf sheath and leaf blade
OsTUB8	Os03g0661300	LOC_Os03g45920	growth	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	These results suggest that OsTUB8 might be differentially expressed in rice anthers due to the action of GA, and involved in the processes of vegetative growth and seed set in rice
OsTUB8	Os03g0661300	LOC_Os03g45920	pollen	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	In situ hybridization and GUS fusion analysis revealed that OsTUB8 was expressed in vascular bundles of anther filaments and in pollen
OsTUB8	Os03g0661300	LOC_Os03g45920	vascular bundle	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	In situ hybridization and GUS fusion analysis revealed that OsTUB8 was expressed in vascular bundles of anther filaments and in pollen
OsTUB8	Os03g0661300	LOC_Os03g45920	sheath	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	At the protein level, OsTUB8 was expressed mainly in anthers compared to callus, root, leaf sheath and leaf blade
OsTUB8	Os03g0661300	LOC_Os03g45920	root	Functional analysis of OsTUB8, an anther-specific β-tubulin in rice	At the protein level, OsTUB8 was expressed mainly in anthers compared to callus, root, leaf sheath and leaf blade
OsTubA1	Os03g0726100	LOC_Os03g51600	root	Tissue-preferential expression of a rice alpha-tubulin gene, OsTubA1, mediated by the first intron	RNA gel-blot analysis demonstrated that OsTubA1 RNA was accumulated mainly at root tips, supporting that the gene is expressed preferentially in actively dividing tissues: root tips, young leaves, and flowers of the meiotic to mitotic pollen stage during rice growth and development.
OsTudor-SN	Os02g0523500	LOC_Os02g32350	endosperm	The cytoplasmic-localized, cytoskeletal-associated RNA binding protein OsTudor-SN: evidence for an essential role in storage protein RNA transport and localization	Consistent with this view, GFP-tagged OsTudor-SN is observed in living endosperm sections as moving particles, a property inhibited by microfilament inhibitors
OsTudor-SN	Os02g0523500	LOC_Os02g32350	cytoplasm	Multifunctional RNA binding protein OsTudor-SN in storage protein mRNA transport and localization.	These results indicate that the two modular peptide regions of OsTudor-SN confer different cellular properties but cooperate in mRNA localization, a process linking its multiple functions in the nucleus and cytoplasm
OsTudor-SN	Os02g0523500	LOC_Os02g32350	nucleus	Multifunctional RNA binding protein OsTudor-SN in storage protein mRNA transport and localization.	These results indicate that the two modular peptide regions of OsTudor-SN confer different cellular properties but cooperate in mRNA localization, a process linking its multiple functions in the nucleus and cytoplasm
OsTudor-SN	Os02g0523500	LOC_Os02g32350	grain	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	Normal protein body formation, grain weight, and expression of many genes were partially restored in EM1084 transgenic line complemented with wildtype OsTudor-SN gene
OsTudor-SN	Os02g0523500	LOC_Os02g32350	development	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	Overall, our study showed that OsTudor-SN possesses multiple functional properties in rice storage protein expression and seed development and that the 4SN and Tsn modules have unique roles in these processes
OsTudor-SN	Os02g0523500	LOC_Os02g32350	seed	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.
OsTudor-SN	Os02g0523500	LOC_Os02g32350	seed	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	Overall, our study showed that OsTudor-SN possesses multiple functional properties in rice storage protein expression and seed development and that the 4SN and Tsn modules have unique roles in these processes
OsTudor-SN	Os02g0523500	LOC_Os02g32350	stress	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	Transcriptome analysis indicates that OsTudor-SN also functions in regulating gene expression of transcriptional factors and genes involved in developmental processes and stress responses as well as for storage proteins
OsTudor-SN	Os02g0523500	LOC_Os02g32350	endosperm	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.
OsTudor-SN	Os02g0523500	LOC_Os02g32350	endosperm	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	We had previously demonstrated that OsTudor-SN is a key player for transporting storage protein mRNAs to specific ER subdomains in developing rice endosperm
OsTudor-SN	Os02g0523500	LOC_Os02g32350	seed development	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	Overall, our study showed that OsTudor-SN possesses multiple functional properties in rice storage protein expression and seed development and that the 4SN and Tsn modules have unique roles in these processes
OsTudor-SN	Os02g0523500	LOC_Os02g32350	grain weight	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	Normal protein body formation, grain weight, and expression of many genes were partially restored in EM1084 transgenic line complemented with wildtype OsTudor-SN gene
OsTudor-SN	Os02g0523500	LOC_Os02g32350	endosperm development	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.
OsTudor-SN	Os02g0523500	LOC_Os02g32350	stress response	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	Transcriptome analysis indicates that OsTudor-SN also functions in regulating gene expression of transcriptional factors and genes involved in developmental processes and stress responses as well as for storage proteins
OsTVLP1	Os03g0715500	LOC_Os03g50740	disease	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-β receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	The expression of OsTVLP1 was induced by treatments with benzothiadiazole (BTH), a chemical activator of plant disease resistance responses, and by infection of the blast fungus, Magnaporthe grisea
OsTVLP1	Os03g0715500	LOC_Os03g50740	disease	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-β receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	Importantly, the expression of OsTVLP1 was activated specifically in disease resistance response induced by BTH and in an incompatible interaction between rice and the blast fungus
OsTVLP1	Os03g0715500	LOC_Os03g50740	disease	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-β receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	Our observations suggest that OsTVLP1 may play a role in rice disease resistance response against pathogen infection
OsTVLP1	Os03g0715500	LOC_Os03g50740	blast	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-β receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	The expression of OsTVLP1 was induced by treatments with benzothiadiazole (BTH), a chemical activator of plant disease resistance responses, and by infection of the blast fungus, Magnaporthe grisea
OsTVLP1	Os03g0715500	LOC_Os03g50740	blast	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-β receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	Importantly, the expression of OsTVLP1 was activated specifically in disease resistance response induced by BTH and in an incompatible interaction between rice and the blast fungus
OsTVLP1	Os03g0715500	LOC_Os03g50740	disease resistance	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-β receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	The expression of OsTVLP1 was induced by treatments with benzothiadiazole (BTH), a chemical activator of plant disease resistance responses, and by infection of the blast fungus, Magnaporthe grisea
OsTVLP1	Os03g0715500	LOC_Os03g50740	disease resistance	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-β receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	Importantly, the expression of OsTVLP1 was activated specifically in disease resistance response induced by BTH and in an incompatible interaction between rice and the blast fungus
OsTVLP1	Os03g0715500	LOC_Os03g50740	disease resistance	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-β receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	Our observations suggest that OsTVLP1 may play a role in rice disease resistance response against pathogen infection
OsTZF1	Os05g0195101	LOC_Os05g10670	shoot	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	The OsTZF1 gene was expressed at relatively high levels in leaves and shoots, although its transcripts were detected in various organs
OsTZF1	Os05g0195101	LOC_Os05g10670	salt	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Expression of OsTZF1 was induced by drought, high-salt stress, and hydrogen peroxide
OsTZF1	Os05g0195101	LOC_Os05g10670	salt	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Ubi:OsTZF1-OX plants showed improved tolerance to high-salt and drought stresses and vice versa for OsTZF1-RNAi plants
OsTZF1	Os05g0195101	LOC_Os05g10670	panicle	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Histochemical activity of beta-glucuronidase in transgenic rice plants containing the promoter of OsTZF1 fused with beta-glucuronidase was observed in callus, coleoptile, young leaf, and panicle tissues
OsTZF1	Os05g0195101	LOC_Os05g10670	salt	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	In addition, OsTZF1 expression was regulated by salt, PEG, and ABA
OsTZF1	Os05g0195101	LOC_Os05g10670	homeostasis	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Microarray analysis revealed that genes related to stress, reactive oxygen species homeostasis, and metal homeostasis were regulated in the Ubi:OsTZF1-OX plants
OsTZF1	Os05g0195101	LOC_Os05g10670	leaf	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Overexpression of OsTZF1 caused a long leaf sheath relative to wild type (WT) under R and FR, suggesting that OsTZF1 probably acts as a negative regulator of photomorphogenesis in rice seedlings
OsTZF1	Os05g0195101	LOC_Os05g10670	sheath	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Overexpression of OsTZF1 caused a long leaf sheath relative to wild type (WT) under R and FR, suggesting that OsTZF1 probably acts as a negative regulator of photomorphogenesis in rice seedlings
OsTZF1	Os05g0195101	LOC_Os05g10670	growth	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Transgenic rice plants overexpressing OsTZF1 driven by a maize (Zea mays) ubiquitin promoter (Ubi:OsTZF1-OX [for overexpression]) exhibited delayed seed germination, growth retardation at the seedling stage, and delayed leaf senescence
OsTZF1	Os05g0195101	LOC_Os05g10670	growth	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	RNA interference (RNAi) knocked-down plants (OsTZF1-RNAi) showed early seed germination, enhanced seedling growth, and early leaf senescence compared with controls
OsTZF1	Os05g0195101	LOC_Os05g10670	seedling	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Here, we investigated a cytoplasmic TZF protein, OsTZF1, which is involved in photomorphogenesis and ABA responses in rice seedlings
OsTZF1	Os05g0195101	LOC_Os05g10670	seedling	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Overexpression of OsTZF1 caused a long leaf sheath relative to wild type (WT) under R and FR, suggesting that OsTZF1 probably acts as a negative regulator of photomorphogenesis in rice seedlings
OsTZF1	Os05g0195101	LOC_Os05g10670	seedling	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Moreover, ABA-induced growth inhibition of rice seedlings was marked in the OsTZF1-overexpression lines compared with WT, suggesting the positive regulation of OsTZF1 to ABA responses
OsTZF1	Os05g0195101	LOC_Os05g10670	seedling	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings
OsTZF1	Os05g0195101	LOC_Os05g10670	salicylic acid	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	OsTZF1 gene expression was also induced by abscisic acid, methyl jasmonate, and salicylic acid
OsTZF1	Os05g0195101	LOC_Os05g10670	drought	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Expression of OsTZF1 was induced by drought, high-salt stress, and hydrogen peroxide
OsTZF1	Os05g0195101	LOC_Os05g10670	drought	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Ubi:OsTZF1-OX plants showed improved tolerance to high-salt and drought stresses and vice versa for OsTZF1-RNAi plants
OsTZF1	Os05g0195101	LOC_Os05g10670	senescence	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Transgenic rice plants overexpressing OsTZF1 driven by a maize (Zea mays) ubiquitin promoter (Ubi:OsTZF1-OX [for overexpression]) exhibited delayed seed germination, growth retardation at the seedling stage, and delayed leaf senescence
OsTZF1	Os05g0195101	LOC_Os05g10670	senescence	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	RNA interference (RNAi) knocked-down plants (OsTZF1-RNAi) showed early seed germination, enhanced seedling growth, and early leaf senescence compared with controls
OsTZF1	Os05g0195101	LOC_Os05g10670	senescence	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes
OsTZF1	Os05g0195101	LOC_Os05g10670	seed	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Transgenic rice plants overexpressing OsTZF1 driven by a maize (Zea mays) ubiquitin promoter (Ubi:OsTZF1-OX [for overexpression]) exhibited delayed seed germination, growth retardation at the seedling stage, and delayed leaf senescence
OsTZF1	Os05g0195101	LOC_Os05g10670	seed	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	RNA interference (RNAi) knocked-down plants (OsTZF1-RNAi) showed early seed germination, enhanced seedling growth, and early leaf senescence compared with controls
OsTZF1	Os05g0195101	LOC_Os05g10670	salt stress	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Expression of OsTZF1 was induced by drought, high-salt stress, and hydrogen peroxide
OsTZF1	Os05g0195101	LOC_Os05g10670	 ABA 	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Here, we investigated a cytoplasmic TZF protein, OsTZF1, which is involved in photomorphogenesis and ABA responses in rice seedlings
OsTZF1	Os05g0195101	LOC_Os05g10670	 ABA 	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Moreover, ABA-induced growth inhibition of rice seedlings was marked in the OsTZF1-overexpression lines compared with WT, suggesting the positive regulation of OsTZF1 to ABA responses
OsTZF1	Os05g0195101	LOC_Os05g10670	 ABA 	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	KEY MESSAGE: OsTZF1 encodes a cytoplasm-localized tandem zinc finger protein and is regulated by both ABA and phytochrome-mediated light signaling
OsTZF1	Os05g0195101	LOC_Os05g10670	 ABA 	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	OsTZF1 functions in phytochrome-mediated light and ABA responses in rice
OsTZF1	Os05g0195101	LOC_Os05g10670	 ABA 	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings
OsTZF1	Os05g0195101	LOC_Os05g10670	seed germination	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Transgenic rice plants overexpressing OsTZF1 driven by a maize (Zea mays) ubiquitin promoter (Ubi:OsTZF1-OX [for overexpression]) exhibited delayed seed germination, growth retardation at the seedling stage, and delayed leaf senescence
OsTZF1	Os05g0195101	LOC_Os05g10670	seed germination	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	RNA interference (RNAi) knocked-down plants (OsTZF1-RNAi) showed early seed germination, enhanced seedling growth, and early leaf senescence compared with controls
OsTZF1	Os05g0195101	LOC_Os05g10670	leaf	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Histochemical activity of beta-glucuronidase in transgenic rice plants containing the promoter of OsTZF1 fused with beta-glucuronidase was observed in callus, coleoptile, young leaf, and panicle tissues
OsTZF1	Os05g0195101	LOC_Os05g10670	leaf	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Transgenic rice plants overexpressing OsTZF1 driven by a maize (Zea mays) ubiquitin promoter (Ubi:OsTZF1-OX [for overexpression]) exhibited delayed seed germination, growth retardation at the seedling stage, and delayed leaf senescence
OsTZF1	Os05g0195101	LOC_Os05g10670	leaf	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	RNA interference (RNAi) knocked-down plants (OsTZF1-RNAi) showed early seed germination, enhanced seedling growth, and early leaf senescence compared with controls
OsTZF1	Os05g0195101	LOC_Os05g10670	growth	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings	Moreover, ABA-induced growth inhibition of rice seedlings was marked in the OsTZF1-overexpression lines compared with WT, suggesting the positive regulation of OsTZF1 to ABA responses
OsTZF1	Os05g0195101	LOC_Os05g10670	seedling	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	Transgenic rice plants overexpressing OsTZF1 driven by a maize (Zea mays) ubiquitin promoter (Ubi:OsTZF1-OX [for overexpression]) exhibited delayed seed germination, growth retardation at the seedling stage, and delayed leaf senescence
OsTZF1	Os05g0195101	LOC_Os05g10670	seedling	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	RNA interference (RNAi) knocked-down plants (OsTZF1-RNAi) showed early seed germination, enhanced seedling growth, and early leaf senescence compared with controls
OsTZF1	Os05g0195101	LOC_Os05g10670	jasmonate	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes	OsTZF1 gene expression was also induced by abscisic acid, methyl jasmonate, and salicylic acid
OsTZF1	Os05g0195101	LOC_Os05g10670	growth	OsTZF1, a CCCH-tandem zinc finger protein gene, driven under own promoter produces no pleiotropic effects and confers salt and drought tolerance in rice.	 Here, we report that transgenic rice plants overexpressing OsTZF1 under own promoter (P(OsTZF1):OsTZF1-OX [for overexpression]) transferred to soil showed normal growth similar to vector control plants
OsTZF5	Os05g0128200	LOC_Os05g03760	growth	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Transgenic rice plants overexpressing OsTZF5 under the constitutive maize ubiquitin promoter exhibited improved survival under drought but also growth retardation
OsTZF5	Os05g0128200	LOC_Os05g03760	growth	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	By introducing OsTZF5 behind the stress-responsive OsNAC6 promoter in two commercial upland cultivars, Curinga and NERICA4, we obtained transgenic plants that showed no growth retardation
OsTZF5	Os05g0128200	LOC_Os05g03760	grain	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.
OsTZF5	Os05g0128200	LOC_Os05g03760	drought	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.
OsTZF5	Os05g0128200	LOC_Os05g03760	drought	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Transgenic rice plants overexpressing OsTZF5 under the constitutive maize ubiquitin promoter exhibited improved survival under drought but also growth retardation
OsTZF5	Os05g0128200	LOC_Os05g03760	drought	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Physiological analysis indicated that OsTZF5 promoted both drought tolerance and drought avoidance
OsTZF5	Os05g0128200	LOC_Os05g03760	drought	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Collectively, our results provide strong evidence that OsTZF5 is a useful biotechnological tool to minimize yield losses in rice grown under drought conditions
OsTZF5	Os05g0128200	LOC_Os05g03760	tolerance	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Physiological analysis indicated that OsTZF5 promoted both drought tolerance and drought avoidance
OsTZF5	Os05g0128200	LOC_Os05g03760	grain yield	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.
OsTZF5	Os05g0128200	LOC_Os05g03760	yield	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.
OsTZF5	Os05g0128200	LOC_Os05g03760	yield	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Collectively, our results provide strong evidence that OsTZF5 is a useful biotechnological tool to minimize yield losses in rice grown under drought conditions
OsTZF5	Os05g0128200	LOC_Os05g03760	cold stress	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of OsTZF5 was induced by abscisic acid, dehydration and cold stress
OsTZF5	Os05g0128200	LOC_Os05g03760	drought tolerance	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Physiological analysis indicated that OsTZF5 promoted both drought tolerance and drought avoidance
OsTZF5	Os05g0128200	LOC_Os05g03760	stress	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.
OsTZF5	Os05g0128200	LOC_Os05g03760	stress	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of OsTZF5 was induced by abscisic acid, dehydration and cold stress
OsTZF5	Os05g0128200	LOC_Os05g03760	zinc	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.
OsTZF5	Os05g0128200	LOC_Os05g03760	abscisic acid	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of OsTZF5 was induced by abscisic acid, dehydration and cold stress
OsTZF5	Os05g0128200	LOC_Os05g03760	R protein	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.
OsTZF5	Os05g0128200	LOC_Os05g03760	Ubiquitin	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Transgenic rice plants overexpressing OsTZF5 under the constitutive maize ubiquitin promoter exhibited improved survival under drought but also growth retardation
OsTZF5	Os05g0128200	LOC_Os05g03760	drought stress	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.
OsTZF5	Os05g0128200	LOC_Os05g03760	drought stress	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.
OsTZF5	Os05g0128200	LOC_Os05g03760	cold	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Expression of OsTZF5 was induced by abscisic acid, dehydration and cold stress
OsTZF7	Os05g0525900	LOC_Os05g45020	drought	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.
OsTZF7	Os05g0525900	LOC_Os05g45020	drought	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 Accordingly, the overexpression of OsTZF7 increased drought tolerance and enhanced sensitivity to exogenous ABA in rice, whereas the knockdown of OsTZF7 resulted in the opposite phenotype
OsTZF7	Os05g0525900	LOC_Os05g45020	drought	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 Together, these results indicate that OsTZF7 positively regulates drought response in rice via ABA signaling and may be involved in mRNA turnover
OsTZF7	Os05g0525900	LOC_Os05g45020	tolerance	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 Accordingly, the overexpression of OsTZF7 increased drought tolerance and enhanced sensitivity to exogenous ABA in rice, whereas the knockdown of OsTZF7 resulted in the opposite phenotype
OsTZF7	Os05g0525900	LOC_Os05g45020	abiotic stress	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 The expression of OsTZF7 was upregulated by abiotic stresses, including polyethylene glycol (PEG) 4000, NaCl, and abscisic acid (ABA) in rice
OsTZF7	Os05g0525900	LOC_Os05g45020	ABA	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 Accordingly, the overexpression of OsTZF7 increased drought tolerance and enhanced sensitivity to exogenous ABA in rice, whereas the knockdown of OsTZF7 resulted in the opposite phenotype
OsTZF7	Os05g0525900	LOC_Os05g45020	ABA	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 Together, these results indicate that OsTZF7 positively regulates drought response in rice via ABA signaling and may be involved in mRNA turnover
OsTZF7	Os05g0525900	LOC_Os05g45020	drought tolerance	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 Accordingly, the overexpression of OsTZF7 increased drought tolerance and enhanced sensitivity to exogenous ABA in rice, whereas the knockdown of OsTZF7 resulted in the opposite phenotype
OsTZF7	Os05g0525900	LOC_Os05g45020	stress	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.
OsTZF7	Os05g0525900	LOC_Os05g45020	biotic stress	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 The expression of OsTZF7 was upregulated by abiotic stresses, including polyethylene glycol (PEG) 4000, NaCl, and abscisic acid (ABA) in rice
OsTZF7	Os05g0525900	LOC_Os05g45020	R protein	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 In this study, we characterized the biological and molecular functions of a novel tandem zinc finger protein, OsTZF7
OsTZF7	Os05g0525900	LOC_Os05g45020	nucleus	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.
OsTZF7	Os05g0525900	LOC_Os05g45020	nucleus	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 We demonstrated that OsTZF7 can traffic between the nucleus and PBs/SGs, and the leucine-rich nuclear export signal (NES) mediates the nuclear export of OsTZF7
OsTZF7	Os05g0525900	LOC_Os05g45020	zinc	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 In this study, we characterized the biological and molecular functions of a novel tandem zinc finger protein, OsTZF7
OsTZF7	Os05g0525900	LOC_Os05g45020	abscisic acid	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 The expression of OsTZF7 was upregulated by abiotic stresses, including polyethylene glycol (PEG) 4000, NaCl, and abscisic acid (ABA) in rice
OsTZF7	Os05g0525900	LOC_Os05g45020	abscisic acid	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 RNA-seq analysis revealed that genes related to &quot;response to stress,&quot; &quot;abscisic acid signaling,&quot; &quot;methylated histone binding,&quot; and &quot;cytoplasmic mRNA processing body&quot; are regulated by OsTZF7
OsTZF7	Os05g0525900	LOC_Os05g45020	 ABA 	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 Accordingly, the overexpression of OsTZF7 increased drought tolerance and enhanced sensitivity to exogenous ABA in rice, whereas the knockdown of OsTZF7 resulted in the opposite phenotype
OsTZF7	Os05g0525900	LOC_Os05g45020	 ABA 	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	 Together, these results indicate that OsTZF7 positively regulates drought response in rice via ABA signaling and may be involved in mRNA turnover
OsTZF7	Os05g0525900	LOC_Os05g45020	drought stress	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.
OsTZF7	Os05g0525900	LOC_Os05g45020	drought stress 	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.
OsU11|U12-31K	Os09g0549500	LOC_Os09g37720	meristem	The Minor Spliceosomal Protein U11/U12-31K Is an RNA Chaperone Crucial for U12 Intron Splicing and the Development of Dicot and Monocot Plants	The U11/U12-31K transcripts were abundantly expressed in the shoot apical meristems (SAMs) of Arabidopsis and rice
OsU11|U12-31K	Os09g0549500	LOC_Os09g37720	growth	The Minor Spliceosomal Protein U11/U12-31K Is an RNA Chaperone Crucial for U12 Intron Splicing and the Development of Dicot and Monocot Plants	Among the several proteins unique to the U12-type spliceosomes, an Arabidopsis thaliana AtU11/U12-31K protein has been shown to be indispensible for proper U12 intron splicing and for normal growth and development of Arabidopsis plants
OsU11|U12-31K	Os09g0549500	LOC_Os09g37720	cell division	The Minor Spliceosomal Protein U11/U12-31K Is an RNA Chaperone Crucial for U12 Intron Splicing and the Development of Dicot and Monocot Plants	Impaired cell division activity in the SAMs and inflorescence stems observed in the AtU11/U12-31K-deficient mutant was completely recovered to normal by the expression of OsU11/U12-31K
OsU11|U12-31K	Os09g0549500	LOC_Os09g37720	inflorescence	The Minor Spliceosomal Protein U11/U12-31K Is an RNA Chaperone Crucial for U12 Intron Splicing and the Development of Dicot and Monocot Plants	Impaired cell division activity in the SAMs and inflorescence stems observed in the AtU11/U12-31K-deficient mutant was completely recovered to normal by the expression of OsU11/U12-31K
OsU11|U12-31K	Os09g0549500	LOC_Os09g37720	shoot	The Minor Spliceosomal Protein U11/U12-31K Is an RNA Chaperone Crucial for U12 Intron Splicing and the Development of Dicot and Monocot Plants	The U11/U12-31K transcripts were abundantly expressed in the shoot apical meristems (SAMs) of Arabidopsis and rice
OsU11|U12-31K	Os09g0549500	LOC_Os09g37720	stem	The Minor Spliceosomal Protein U11/U12-31K Is an RNA Chaperone Crucial for U12 Intron Splicing and the Development of Dicot and Monocot Plants	Impaired cell division activity in the SAMs and inflorescence stems observed in the AtU11/U12-31K-deficient mutant was completely recovered to normal by the expression of OsU11/U12-31K
OsU11|U12-31K	Os09g0549500	LOC_Os09g37720	stem	The Minor Spliceosomal Protein U11/U12-31K Is an RNA Chaperone Crucial for U12 Intron Splicing and the Development of Dicot and Monocot Plants	The U11/U12-31K transcripts were abundantly expressed in the shoot apical meristems (SAMs) of Arabidopsis and rice
OsU11|U12-31K	Os09g0549500	LOC_Os09g37720	stem	The Minor Spliceosomal Protein U11/U12-31K Is an RNA Chaperone Crucial for U12 Intron Splicing and the Development of Dicot and Monocot Plants	Impaired cell division activity in the SAMs and inflorescence stems observed in the AtU11/U12-31K-deficient mutant was completely recovered to normal by the expression of OsU11/U12-31K
OsU11|U12-31K	Os09g0549500	LOC_Os09g37720	shoot apical meristem	The Minor Spliceosomal Protein U11/U12-31K Is an RNA Chaperone Crucial for U12 Intron Splicing and the Development of Dicot and Monocot Plants	The U11/U12-31K transcripts were abundantly expressed in the shoot apical meristems (SAMs) of Arabidopsis and rice
OsUAM3	Os07g0604800	LOC_Os07g41360	pollen wall morphogenesis	UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa)	UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa)
OsUAM3	Os07g0604800	LOC_Os07g41360	pollen wall	UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa)	UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa)
OsUAM3	Os07g0604800	LOC_Os07g41360	pollen	UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa)	UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa)
OsUAM3	Os07g0604800	LOC_Os07g41360	reproductive development	UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa)	Our results suggest that the function of OsUAM3 is important for synthesis of arabinan side chains of rhamnogalacturonan-I and is required for reproductive developmental processes, especially the formation of the cell wall in pollen.
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	leaf senescence	Functional inactivation of UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) induces early leaf senescence and defence responses in rice	Functional inactivation of UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) induces early leaf senescence and defence responses in rice
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	defence response	Functional inactivation of UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) induces early leaf senescence and defence responses in rice	Functional inactivation of UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) induces early leaf senescence and defence responses in rice
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	pyrophosphorylase	Functional inactivation of UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) induces early leaf senescence and defence responses in rice	The SPL29 gene was identified by map-based cloning, and SPL29 was confirmed as UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) by enzymatic analysis.
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	jasmonic acid	Functional inactivation of UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) induces early leaf senescence and defence responses in rice	The plant hormones jasmonic acid and abscisic acid also accumulated in spl29 plants.
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	abscisic acid	Functional inactivation of UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) induces early leaf senescence and defence responses in rice	The plant hormones jasmonic acid and abscisic acid also accumulated in spl29 plants.
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	chloroplast	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	RNA sequencing analysis showed that photosystem-related genes were differentially expressed in the hes1 mutant under different temperatures, indicating that HES1 plays essential roles in maintaining chloroplast function
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	temperature	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	HES1 expression was induced under high temperature
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	temperature	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	Furthermore, loss of function of HES1 affected the HSFs expression and its mutation exhibited greater vulnerability to high temperature
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	temperature	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	Several experiments revealed that higher accumulation of reactive oxygen species occurred in the hes1 mutant under high temperature
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	temperature	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	TUNEL and comet experiments indicated that the hes1 undergo more severe DNA damage under high temperature
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	temperature	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	The determination of chlorophyll content and chloroplast ultrastructure showed more severe photosystem-defects occurred in the hes1 mutant under high temperature
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	stress	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	This study reveals that HES1 plays a key role in adaptation to high-temperature stress in rice
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	chlorophyll content	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	The determination of chlorophyll content and chloroplast ultrastructure showed more severe photosystem-defects occurred in the hes1 mutant under high temperature
OsUAP1|SPL29|HES1	Os08g0206900	LOC_Os08g10600	reactive oxygen species	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	Several experiments revealed that higher accumulation of reactive oxygen species occurred in the hes1 mutant under high temperature
OsUBC11	Os01g0839700	LOC_Os01g62244	root	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 OsUBC11 overexpression lines showed the same root phenotypes
OsUBC11	Os01g0839700	LOC_Os01g62244	root	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 These results demonstrated that OsUBC11 was involved in root development
OsUBC11	Os01g0839700	LOC_Os01g62244	root	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Expression of the auxin synthesis regulating gene OsYUCCA4/6/7/9, the auxin transport gene OsAUX1, auxin/indole-3-acetic acid (Aux/IAA) family gene OsIAA31, auxin response factor OsARF16 and root regulator key genes, including OsWOX11, OsCRL1, OsCRL5 was significantly down-regulated in OsUBC11 overexpressing plants
OsUBC11	Os01g0839700	LOC_Os01g62244	root	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Collectively, these results indicate that OsUBC11 modulates auxin signaling, ultimately affecting root development at the rice seedling stage
OsUBC11	Os01g0839700	LOC_Os01g62244	development	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.
OsUBC11	Os01g0839700	LOC_Os01g62244	development	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 These results demonstrated that OsUBC11 was involved in root development
OsUBC11	Os01g0839700	LOC_Os01g62244	development	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Collectively, these results indicate that OsUBC11 modulates auxin signaling, ultimately affecting root development at the rice seedling stage
OsUBC11	Os01g0839700	LOC_Os01g62244	auxin	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.
OsUBC11	Os01g0839700	LOC_Os01g62244	auxin	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Expression of the auxin synthesis regulating gene OsYUCCA4/6/7/9, the auxin transport gene OsAUX1, auxin/indole-3-acetic acid (Aux/IAA) family gene OsIAA31, auxin response factor OsARF16 and root regulator key genes, including OsWOX11, OsCRL1, OsCRL5 was significantly down-regulated in OsUBC11 overexpressing plants
OsUBC11	Os01g0839700	LOC_Os01g62244	auxin	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Collectively, these results indicate that OsUBC11 modulates auxin signaling, ultimately affecting root development at the rice seedling stage
OsUBC11	Os01g0839700	LOC_Os01g62244	seedling	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Collectively, these results indicate that OsUBC11 modulates auxin signaling, ultimately affecting root development at the rice seedling stage
OsUBC11	Os01g0839700	LOC_Os01g62244	root development	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 These results demonstrated that OsUBC11 was involved in root development
OsUBC11	Os01g0839700	LOC_Os01g62244	root development	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Collectively, these results indicate that OsUBC11 modulates auxin signaling, ultimately affecting root development at the rice seedling stage
OsUBC11	Os01g0839700	LOC_Os01g62244	auxin response	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Expression of the auxin synthesis regulating gene OsYUCCA4/6/7/9, the auxin transport gene OsAUX1, auxin/indole-3-acetic acid (Aux/IAA) family gene OsIAA31, auxin response factor OsARF16 and root regulator key genes, including OsWOX11, OsCRL1, OsCRL5 was significantly down-regulated in OsUBC11 overexpressing plants
OsUBC11	Os01g0839700	LOC_Os01g62244	auxin transport	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Expression of the auxin synthesis regulating gene OsYUCCA4/6/7/9, the auxin transport gene OsAUX1, auxin/indole-3-acetic acid (Aux/IAA) family gene OsIAA31, auxin response factor OsARF16 and root regulator key genes, including OsWOX11, OsCRL1, OsCRL5 was significantly down-regulated in OsUBC11 overexpressing plants
OsUBC11	Os01g0839700	LOC_Os01g62244	lateral root	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 In the present study, a T-DNA insertional mutant named R164, which exhibited a significant decrease in the length of primary and lateral roots, was used as the experimental material to explore the potential function of OsUBC11
OsUBC11	Os01g0839700	LOC_Os01g62244	Ubiquitin	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Biochemical experiments showed that OsUBC11 is a lysine-48-linked ubiquitin chain-forming conjugase
OsUBC11	Os01g0839700	LOC_Os01g62244	primary root	Ubiquitin-Conjugating Enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	 Application of exogenous NAA restored the length of lateral and primary roots in R164 and OsUBC11 overexpression lines
OsUBC13	Os01g0673600	LOC_Os01g48280	resistance	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.	 Strikingly, OsUbc13 directly interacts with OsSnRK1a, which is the α catalytic subunit of SnRK1 (sucrose non-fermenting-1-related protein kinase-1) and acts as a positive regulator of broad-spectrum disease resistance in rice
OsUBC13	Os01g0673600	LOC_Os01g48280	disease	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.	 Strikingly, OsUbc13 directly interacts with OsSnRK1a, which is the α catalytic subunit of SnRK1 (sucrose non-fermenting-1-related protein kinase-1) and acts as a positive regulator of broad-spectrum disease resistance in rice
OsUBC13	Os01g0673600	LOC_Os01g48280	disease resistance	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.	 Strikingly, OsUbc13 directly interacts with OsSnRK1a, which is the α catalytic subunit of SnRK1 (sucrose non-fermenting-1-related protein kinase-1) and acts as a positive regulator of broad-spectrum disease resistance in rice
OsUBC13	Os01g0673600	LOC_Os01g48280	immunity	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.
OsUBC13	Os01g0673600	LOC_Os01g48280	immunity	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.	1 produced similar effects with inhibition of OsUbc13 in affecting immunity responses, M
OsUBC13	Os01g0673600	LOC_Os01g48280	immunity	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.	 Our data demonstrate OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a
OsUBC13	Os01g0673600	LOC_Os01g48280	broad-spectrum disease resistance	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.	 Strikingly, OsUbc13 directly interacts with OsSnRK1a, which is the α catalytic subunit of SnRK1 (sucrose non-fermenting-1-related protein kinase-1) and acts as a positive regulator of broad-spectrum disease resistance in rice
OsUBC13	Os01g0673600	LOC_Os01g48280	protein kinase	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.	 Strikingly, OsUbc13 directly interacts with OsSnRK1a, which is the α catalytic subunit of SnRK1 (sucrose non-fermenting-1-related protein kinase-1) and acts as a positive regulator of broad-spectrum disease resistance in rice
OsUBC26	Os12g0636800	LOC_Os12g44000	resistance	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae	Both RNA interference lines and CRISPR/Cas9 null mutants of OsUBC26 reduced rice resistance to M
OsUBC26	Os12g0636800	LOC_Os12g44000	resistance	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae	In summary, OsUBC26 plays important roles in rice disease resistance by regulating WRKY45 expression and working with E3 ligases such as APIP6 to counteract the effector protein AvrPiz-t from M
OsUBC26	Os12g0636800	LOC_Os12g44000	disease	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae	In summary, OsUBC26 plays important roles in rice disease resistance by regulating WRKY45 expression and working with E3 ligases such as APIP6 to counteract the effector protein AvrPiz-t from M
OsUBC26	Os12g0636800	LOC_Os12g44000	disease resistance	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae	In summary, OsUBC26 plays important roles in rice disease resistance by regulating WRKY45 expression and working with E3 ligases such as APIP6 to counteract the effector protein AvrPiz-t from M
OsUBC26	Os12g0636800	LOC_Os12g44000	blast	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae
OsUBC26	Os12g0636800	LOC_Os12g44000	magnaporthe oryzae	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae
OsUBC26	Os12g0636800	LOC_Os12g44000	R protein	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae	In summary, OsUBC26 plays important roles in rice disease resistance by regulating WRKY45 expression and working with E3 ligases such as APIP6 to counteract the effector protein AvrPiz-t from M
OsUBC26	Os12g0636800	LOC_Os12g44000	immunity	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae
OsUBC5a	Os01g0658400	LOC_Os01g46926	development	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
OsUBC5a	Os01g0658400	LOC_Os01g46926	vesicular	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
OsUBC5a	Os01g0658400	LOC_Os01g46926	vesicular trafficking	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
OsUBC5a	Os01g0658400	LOC_Os01g46926	defence	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
OsUBC5a	Os01g0658400	LOC_Os01g46926	defence response	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
OsUBC5b	Os02g0261100	LOC_Os02g16040	defense response	EL5, a rice N-acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b	These results strongly suggest that EL5 and OsUBC5b have roles in plant defense response through the turnover of protein(s) via the ubiquitin/proteasome system
OsUBC5b	Os02g0261100	LOC_Os02g16040	defense	EL5, a rice N-acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b	These results strongly suggest that EL5 and OsUBC5b have roles in plant defense response through the turnover of protein(s) via the ubiquitin/proteasome system
OsUbDKgamma4|OsUbDK4	Os02g0290500	LOC_Os02g18840	flowering time	OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDK4	This result, together with the observations on the interaction between OsUbDK4 and OsFTIP1 (Figure 5), suggests that OsUbDK4 exerts its function in controlling flowering time via OsFTIP1.
OsUBL5	Os02g0628800	LOC_Os02g41820	Ubiquitin	Ubiquitin-Like protein 5 interacts with the silencing suppressor p3 of rice stripe virus and mediates its degradation through the 26S proteasome pathway	1 and OsUBL5 interacted with RPN10 and RPN13, the receptors of ubiquitin in the 26S proteasome
OsUBP15|LG1	Os02g0244300	LOC_Os02g14730	grain	Ubiquitin Specific Protease 15 Has an Important Role in Regulating Grain Width and Size in Rice	Genetic data indicated that OsUBP15 and GW2 were not independent in regulating grain width and size
OsUBP15|LG1	Os02g0244300	LOC_Os02g14730	grain	Ubiquitin Specific Protease 15 Has an Important Role in Regulating Grain Width and Size in Rice	In summary, we identified OsUBP15 as a positive regulator of grain width and size in rice and provide a promising strategy for improvement of grain yield by pyramiding OsUBP15 and gw2
OsUBP15|LG1	Os02g0244300	LOC_Os02g14730	grain yield	Ubiquitin Specific Protease 15 Has an Important Role in Regulating Grain Width and Size in Rice	In summary, we identified OsUBP15 as a positive regulator of grain width and size in rice and provide a promising strategy for improvement of grain yield by pyramiding OsUBP15 and gw2
OsUBP15|LG1	Os02g0244300	LOC_Os02g14730	yield	Ubiquitin Specific Protease 15 Has an Important Role in Regulating Grain Width and Size in Rice	In summary, we identified OsUBP15 as a positive regulator of grain width and size in rice and provide a promising strategy for improvement of grain yield by pyramiding OsUBP15 and gw2
OsUBP15|LG1	Os02g0244300	LOC_Os02g14730	grain width	Ubiquitin Specific Protease 15 Has an Important Role in Regulating Grain Width and Size in Rice	Genetic data indicated that OsUBP15 and GW2 were not independent in regulating grain width and size
OsUBP15|LG1	Os02g0244300	LOC_Os02g14730	grain width	Ubiquitin Specific Protease 15 Has an Important Role in Regulating Grain Width and Size in Rice	In summary, we identified OsUBP15 as a positive regulator of grain width and size in rice and provide a promising strategy for improvement of grain yield by pyramiding OsUBP15 and gw2
OsUBP21	Os11g0573000	LOC_Os11g36470	tolerance	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice.	Further, knocking the expression of OsUBP21 or AtUBP13 down or out increased the tolerance of rice and Arabidopsis plants to HS stress, suggesting that the function of these ubiquitin-specific proteases in regulating plant HS responses is conserved between monocots and dicots
OsUBP21	Os11g0573000	LOC_Os11g36470	stress	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice.	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice.
OsUBP21	Os11g0573000	LOC_Os11g36470	stress response	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice.	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice.
OsUBP21	Os11g0573000	LOC_Os11g36470	Heat Stress Response	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice
OsUBP21	Os11g0573000	LOC_Os11g36470	Heat Stress	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice
OsUBP6	Os01g0550100	LOC_Os01g36930	growth	Structure and expression of OsUBP6, an ubiquitin-specific protease 6 homolog in rice (Oryza sativa L.)	We also examined how knock-out of OsUBP6 affects developmental growth of rice plants
OsUBP6	Os01g0550100	LOC_Os01g36930	growth	Structure and expression of OsUBP6, an ubiquitin-specific protease 6 homolog in rice (Oryza sativa L.)	Although homozygous T3 osubp6 T-DNA insertion mutant seedlings displayed slower growth relative to wild type seedlings, mature mutant plants appeared to be normal
OsUBP6	Os01g0550100	LOC_Os01g36930	seedling	Structure and expression of OsUBP6, an ubiquitin-specific protease 6 homolog in rice (Oryza sativa L.)	Although homozygous T3 osubp6 T-DNA insertion mutant seedlings displayed slower growth relative to wild type seedlings, mature mutant plants appeared to be normal
OsUBR7	Os06g0529800	LOC_Os06g33810	domestication	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.	 The genetic divergence of OsUBR7 alleles among japonica and indica cultivars affects their transcriptional activity, and these alleles might have undergone selection during rice domestication
OsUBR7	Os06g0529800	LOC_Os06g33810	cell cycle	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.	 OsUBR7 mediates H2Bub1 at a number of chromatin loci for the normal expression of target genes, including cell cycle-related and pleiotropic genes, consistent with the observation that the osubr7 mutant had suppression of cell cycle progression due to reductions of H2Bub1 and expression levels at these loci
OsUBR7	Os06g0529800	LOC_Os06g33810	height	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.
OsUBR7	Os06g0529800	LOC_Os06g33810	plant height	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.
OsUBR7	Os06g0529800	LOC_Os06g33810	plant height	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.	 Here we report a new plant height-related gene OsUBR7 in rice (Oryza sativa L
OsUBR7	Os06g0529800	LOC_Os06g33810	cell proliferation	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.
OsUBR7	Os06g0529800	LOC_Os06g33810	Ubiquitin	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.	 OsUBR7 encodes a putative E3 ligase containing a Plant Homeodomain-finger and an Ubiquitin Protein Ligase E3 Component N-Recognin7 (UBR7) domain
OsUCH3	Os02g0654500	LOC_Os02g43760	tapetum differentiation	Rice tapetum differentiation is sensitive to downregulation of OsUCH3, a ubiquitin C-terminal hydrolase	Rice tapetum differentiation is sensitive to downregulation of OsUCH3, a ubiquitin C-terminal hydrolase
OsUCH3	Os02g0654500	LOC_Os02g43760	tapetum	Rice tapetum differentiation is sensitive to downregulation of OsUCH3, a ubiquitin C-terminal hydrolase	Rice tapetum differentiation is sensitive to downregulation of OsUCH3, a ubiquitin C-terminal hydrolase
OsUCH3	Os02g0654500	LOC_Os02g43760	hydrolase	Rice tapetum differentiation is sensitive to downregulation of OsUCH3, a ubiquitin C-terminal hydrolase	Rice tapetum differentiation is sensitive to downregulation of OsUCH3, a ubiquitin C-terminal hydrolase
OsUCL23	Os08g0137400	LOC_Os08g04310	pollen	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsUCL23	Os08g0137400	LOC_Os08g04310	pollen	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We propose a model in which OsmiR528 regulates pollen intine formation by directly targeting OsUCL23 and in which OsUCL23 interacts with the POT protein on the PVCs and MVBs to regulate the production of metabolites during pollen development
OsUCL23	Os08g0137400	LOC_Os08g04310	development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsUCL23	Os08g0137400	LOC_Os08g04310	development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We propose a model in which OsmiR528 regulates pollen intine formation by directly targeting OsUCL23 and in which OsUCL23 interacts with the POT protein on the PVCs and MVBs to regulate the production of metabolites during pollen development
OsUCL23	Os08g0137400	LOC_Os08g04310	R protein	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsUCL23	Os08g0137400	LOC_Os08g04310	copper	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsUCL23	Os08g0137400	LOC_Os08g04310	pollen development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We further demonstrated that OsmiR528 affects pollen development by directly targeting the uclacyanin gene OsUCL23 (encoding a member of the plant-specific blue copper protein family of phytocyanins) and regulating intine deposition
OsUCL23	Os08g0137400	LOC_Os08g04310	pollen development	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	We propose a model in which OsmiR528 regulates pollen intine formation by directly targeting OsUCL23 and in which OsUCL23 interacts with the POT protein on the PVCs and MVBs to regulate the production of metabolites during pollen development
OsUCL8	Os03g0709100	LOC_Os03g50140	grain	miRNA MiR408 regulates grain yield and photosynthesis via a phytocyanin protein.	The knock down or knock out of OsUCL8 also increases grain yield, while the overexpression of OsUCL8 results in an opposite phenotype
OsUCL8	Os03g0709100	LOC_Os03g50140	photosynthesis	miRNA MiR408 regulates grain yield and photosynthesis via a phytocyanin protein.	Further studies revealed that the cleavage of OsUCL8 by miR408 affects copper homeostasis in the plant cell, which in turn affects the abundance of plastocyanin proteins and photosynthesis in rice
OsUCL8	Os03g0709100	LOC_Os03g50140	grain yield	miRNA MiR408 regulates grain yield and photosynthesis via a phytocyanin protein.	The knock down or knock out of OsUCL8 also increases grain yield, while the overexpression of OsUCL8 results in an opposite phenotype
OsUCL8	Os03g0709100	LOC_Os03g50140	inflorescence	miRNA MiR408 regulates grain yield and photosynthesis via a phytocyanin protein.	Spatial and temporal expression analyses showed that OsUCL8 was highly expressed in pistils, young panicles, developing seeds and inflorescence meristem, and was nearly complementary to that of OsmiR408
OsUCL8	Os03g0709100	LOC_Os03g50140	homeostasis	miRNA MiR408 regulates grain yield and photosynthesis via a phytocyanin protein.	Further studies revealed that the cleavage of OsUCL8 by miR408 affects copper homeostasis in the plant cell, which in turn affects the abundance of plastocyanin proteins and photosynthesis in rice
OsUCL8	Os03g0709100	LOC_Os03g50140	plasma membrane	miRNA MiR408 regulates grain yield and photosynthesis via a phytocyanin protein.	Interestingly, the OsUCL8 protein was localized to the cytoplasm, distinctive from a majority of phytocyanins which localize to the plasma membrane
OsUCL8	Os03g0709100	LOC_Os03g50140	copper	miRNA MiR408 regulates grain yield and photosynthesis via a phytocyanin protein.	Further studies revealed that the cleavage of OsUCL8 by miR408 affects copper homeostasis in the plant cell, which in turn affects the abundance of plastocyanin proteins and photosynthesis in rice
OsUCL8	Os03g0709100	LOC_Os03g50140	growth	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	The overexpression of OsUCL8 led to a striking irregularity in pollen tube growth and pollination and thus affected the seed setting rate in rice; many pollen tubes appeared to lose the ability to grow directly into the style
OsUCL8	Os03g0709100	LOC_Os03g50140	growth	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	The rice plantacyanin family member OsUCL8 plays an important role in pollen tube formation and growth and, in turn, regulates fertility and the seed setting rate
OsUCL8	Os03g0709100	LOC_Os03g50140	pollen	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	The overexpression of OsUCL8 led to a striking irregularity in pollen tube growth and pollination and thus affected the seed setting rate in rice; many pollen tubes appeared to lose the ability to grow directly into the style
OsUCL8	Os03g0709100	LOC_Os03g50140	pollen	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	We further demonstrated that OsUCL8 mainly affects pollen intine formation
OsUCL8	Os03g0709100	LOC_Os03g50140	pollen	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	The addition of Vitamin B1 (VB1) significantly contributed to the germination of OXUCL8 pollen grains, suggesting that OsUCL8 could be associated with VB1 production
OsUCL8	Os03g0709100	LOC_Os03g50140	pollen	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	The rice plantacyanin family member OsUCL8 plays an important role in pollen tube formation and growth and, in turn, regulates fertility and the seed setting rate
OsUCL8	Os03g0709100	LOC_Os03g50140	seed	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	The overexpression of OsUCL8 led to a striking irregularity in pollen tube growth and pollination and thus affected the seed setting rate in rice; many pollen tubes appeared to lose the ability to grow directly into the style
OsUCL8	Os03g0709100	LOC_Os03g50140	seed	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	The rice plantacyanin family member OsUCL8 plays an important role in pollen tube formation and growth and, in turn, regulates fertility and the seed setting rate
OsUCL8	Os03g0709100	LOC_Os03g50140	fertility	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	The rice plantacyanin family member OsUCL8 plays an important role in pollen tube formation and growth and, in turn, regulates fertility and the seed setting rate
OsUEV1B	Os12g0605400	LOC_Os12g41220	root	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Some Pi starvation inducible and phosphate transporter genes were upregulated in osuev1b mutant and OsUEV1B-RNAi plants in association with enhanced Pi acquisition, and representative Pi starvation responses, including stimulation of acid phosphatase activity and root hair growth, were also activated in the presence of sufficient Pi
OsUEV1B	Os12g0605400	LOC_Os12g41220	cytoplasm	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	In the present study, we found OsUEV1B was specifically inhibited by Pi deficiency, and was localized in the nucleus and cytoplasm
OsUEV1B	Os12g0605400	LOC_Os12g41220	homeostasis	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Our results indicate that OsUEV1B is required for rice phosphate homeostasis
OsUEV1B	Os12g0605400	LOC_Os12g41220	transporter	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Some Pi starvation inducible and phosphate transporter genes were upregulated in osuev1b mutant and OsUEV1B-RNAi plants in association with enhanced Pi acquisition, and representative Pi starvation responses, including stimulation of acid phosphatase activity and root hair growth, were also activated in the presence of sufficient Pi
OsUEV1B	Os12g0605400	LOC_Os12g41220	nucleus	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	In the present study, we found OsUEV1B was specifically inhibited by Pi deficiency, and was localized in the nucleus and cytoplasm
OsUEV1B	Os12g0605400	LOC_Os12g41220	root hair	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Some Pi starvation inducible and phosphate transporter genes were upregulated in osuev1b mutant and OsUEV1B-RNAi plants in association with enhanced Pi acquisition, and representative Pi starvation responses, including stimulation of acid phosphatase activity and root hair growth, were also activated in the presence of sufficient Pi
OsUEV1B	Os12g0605400	LOC_Os12g41220	phosphate	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Some Pi starvation inducible and phosphate transporter genes were upregulated in osuev1b mutant and OsUEV1B-RNAi plants in association with enhanced Pi acquisition, and representative Pi starvation responses, including stimulation of acid phosphatase activity and root hair growth, were also activated in the presence of sufficient Pi
OsUEV1B	Os12g0605400	LOC_Os12g41220	phosphate	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Our results indicate that OsUEV1B is required for rice phosphate homeostasis
OsUEV1B	Os12g0605400	LOC_Os12g41220	Pi	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	In the present study, we found OsUEV1B was specifically inhibited by Pi deficiency, and was localized in the nucleus and cytoplasm
OsUEV1B	Os12g0605400	LOC_Os12g41220	Pi	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Both osuev1b mutant and OsUEV1B-RNA interference (RNAi) lines displayed serious symptoms of toxicity due to Pi overaccumulation
OsUEV1B	Os12g0605400	LOC_Os12g41220	Pi	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Some Pi starvation inducible and phosphate transporter genes were upregulated in osuev1b mutant and OsUEV1B-RNAi plants in association with enhanced Pi acquisition, and representative Pi starvation responses, including stimulation of acid phosphatase activity and root hair growth, were also activated in the presence of sufficient Pi
OsUEV1B	Os12g0605400	LOC_Os12g41220	Pi	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Moreover, overexpression of OsVDAC1 in osuev1b partially restored its high Pi concentration to a level between those of osuev1b and DongJin
OsUEV1B	Os12g0605400	LOC_Os12g41220	phosphatase	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Some Pi starvation inducible and phosphate transporter genes were upregulated in osuev1b mutant and OsUEV1B-RNAi plants in association with enhanced Pi acquisition, and representative Pi starvation responses, including stimulation of acid phosphatase activity and root hair growth, were also activated in the presence of sufficient Pi
OsUEV1B	Os12g0605400	LOC_Os12g41220	pi	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	In the present study, we found OsUEV1B was specifically inhibited by Pi deficiency, and was localized in the nucleus and cytoplasm
OsUEV1B	Os12g0605400	LOC_Os12g41220	pi	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Both osuev1b mutant and OsUEV1B-RNA interference (RNAi) lines displayed serious symptoms of toxicity due to Pi overaccumulation
OsUEV1B	Os12g0605400	LOC_Os12g41220	pi	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Some Pi starvation inducible and phosphate transporter genes were upregulated in osuev1b mutant and OsUEV1B-RNAi plants in association with enhanced Pi acquisition, and representative Pi starvation responses, including stimulation of acid phosphatase activity and root hair growth, were also activated in the presence of sufficient Pi
OsUEV1B	Os12g0605400	LOC_Os12g41220	pi	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Moreover, overexpression of OsVDAC1 in osuev1b partially restored its high Pi concentration to a level between those of osuev1b and DongJin
OsUEV1B	Os12g0605400	LOC_Os12g41220	phosphate transport	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Some Pi starvation inducible and phosphate transporter genes were upregulated in osuev1b mutant and OsUEV1B-RNAi plants in association with enhanced Pi acquisition, and representative Pi starvation responses, including stimulation of acid phosphatase activity and root hair growth, were also activated in the presence of sufficient Pi
OsUEV1B	Os12g0605400	LOC_Os12g41220	phosphate homeostasis	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Our results indicate that OsUEV1B is required for rice phosphate homeostasis
OsUGE1	Os05g0595100	LOC_Os05g51670	root	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.
OsUGE1	Os05g0595100	LOC_Os05g51670	root	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 Here, we report a novel mechanism that OsUGE1 is negatively controlled by OsGRF6 to regulate root hair elongation in rice
OsUGE1	Os05g0595100	LOC_Os05g51670	root	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 Knockout mutants of OsUGE1 using CRISPR-Cas9 technology showed longer root hairs than those of wild type
OsUGE1	Os05g0595100	LOC_Os05g51670	root	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 In contrast, overexpression lines of OsUGE1 displayed shorter root hair compared with those of wild type
OsUGE1	Os05g0595100	LOC_Os05g51670	root	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 Taken together, our study reveals a novel pathway that OsUGE1 is negatively controlled by OsGRF6 to regulate root hair elongation in rice
OsUGE1	Os05g0595100	LOC_Os05g51670	nucleus	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 Subcellular localization analysis indicates that OsUGE1 is located in endoplasmic reticulum, nucleus and plasma membrane
OsUGE1	Os05g0595100	LOC_Os05g51670	plasma membrane	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 Subcellular localization analysis indicates that OsUGE1 is located in endoplasmic reticulum, nucleus and plasma membrane
OsUGE1	Os05g0595100	LOC_Os05g51670	root hair	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.
OsUGE1	Os05g0595100	LOC_Os05g51670	root hair	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 Here, we report a novel mechanism that OsUGE1 is negatively controlled by OsGRF6 to regulate root hair elongation in rice
OsUGE1	Os05g0595100	LOC_Os05g51670	root hair	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 Knockout mutants of OsUGE1 using CRISPR-Cas9 technology showed longer root hairs than those of wild type
OsUGE1	Os05g0595100	LOC_Os05g51670	root hair	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 In contrast, overexpression lines of OsUGE1 displayed shorter root hair compared with those of wild type
OsUGE1	Os05g0595100	LOC_Os05g51670	root hair	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	 Taken together, our study reveals a novel pathway that OsUGE1 is negatively controlled by OsGRF6 to regulate root hair elongation in rice
OsUGE1	Os05g0595100	LOC_Os05g51670	development	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	 Collectively, our results indicate that OsUGE1 not only functions as a UDP-glucose epimerase but also moonlights as a transcriptional activator to promote tapetum degradation, revealing a novel regulatory mechanism of rice reproductive development
OsUGE1	Os05g0595100	LOC_Os05g51670	tapetum	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	 Interestingly, we discovered that OsUGE1 participates in the TIP2/bHLH142-TDR-EAT1/DTD transcriptional regulatory cascade involved in tapetum degradation, in which TIP2 and TDR regulate the expression of OsUGE1 while OsUGE1 regulates the expression of EAT1
OsUGE1	Os05g0595100	LOC_Os05g51670	tapetum	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	 Collectively, our results indicate that OsUGE1 not only functions as a UDP-glucose epimerase but also moonlights as a transcriptional activator to promote tapetum degradation, revealing a novel regulatory mechanism of rice reproductive development
OsUGE1	Os05g0595100	LOC_Os05g51670	reproductive	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	 Collectively, our results indicate that OsUGE1 not only functions as a UDP-glucose epimerase but also moonlights as a transcriptional activator to promote tapetum degradation, revealing a novel regulatory mechanism of rice reproductive development
OsUGE1	Os05g0595100	LOC_Os05g51670	reproductive development	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	 Collectively, our results indicate that OsUGE1 not only functions as a UDP-glucose epimerase but also moonlights as a transcriptional activator to promote tapetum degradation, revealing a novel regulatory mechanism of rice reproductive development
OsUGE1	Os05g0595100	LOC_Os05g51670	transcriptional regulator	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	 Interestingly, we discovered that OsUGE1 participates in the TIP2/bHLH142-TDR-EAT1/DTD transcriptional regulatory cascade involved in tapetum degradation, in which TIP2 and TDR regulate the expression of OsUGE1 while OsUGE1 regulates the expression of EAT1
OsUGE1	Os05g0595100	LOC_Os05g51670	transcriptional activator	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	 Collectively, our results indicate that OsUGE1 not only functions as a UDP-glucose epimerase but also moonlights as a transcriptional activator to promote tapetum degradation, revealing a novel regulatory mechanism of rice reproductive development
OsUGE1	Os05g0595100	LOC_Os05g51670	tapetum degradation	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	 Interestingly, we discovered that OsUGE1 participates in the TIP2/bHLH142-TDR-EAT1/DTD transcriptional regulatory cascade involved in tapetum degradation, in which TIP2 and TDR regulate the expression of OsUGE1 while OsUGE1 regulates the expression of EAT1
OsUGE1	Os05g0595100	LOC_Os05g51670	tapetum degradation	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	 Collectively, our results indicate that OsUGE1 not only functions as a UDP-glucose epimerase but also moonlights as a transcriptional activator to promote tapetum degradation, revealing a novel regulatory mechanism of rice reproductive development
OsUGE3	Os09g0526700	LOC_Os09g35800	growth	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Our results suggest that OsUGE3 improves biomass production, mechanical strength, and salt stress tolerance by reinforcement of cell walls with polysaccharides and it could be targeted for genetic modification to improve rice growth under salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	salt	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Notably, the OsUGE3 is ubiquitously expressed and induced by salt treatment
OsUGE3	Os09g0526700	LOC_Os09g35800	salt	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Moreover, OsUGE3 overexpression improves the homeostasis of Na(+) and K(+) and induces a higher accumulation of hemicelluloses and soluble sugars during salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	salt	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Our results suggest that OsUGE3 improves biomass production, mechanical strength, and salt stress tolerance by reinforcement of cell walls with polysaccharides and it could be targeted for genetic modification to improve rice growth under salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	tolerance	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Our results suggest that OsUGE3 improves biomass production, mechanical strength, and salt stress tolerance by reinforcement of cell walls with polysaccharides and it could be targeted for genetic modification to improve rice growth under salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	salt stress	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Moreover, OsUGE3 overexpression improves the homeostasis of Na(+) and K(+) and induces a higher accumulation of hemicelluloses and soluble sugars during salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	salt stress	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Our results suggest that OsUGE3 improves biomass production, mechanical strength, and salt stress tolerance by reinforcement of cell walls with polysaccharides and it could be targeted for genetic modification to improve rice growth under salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	stress	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Moreover, OsUGE3 overexpression improves the homeostasis of Na(+) and K(+) and induces a higher accumulation of hemicelluloses and soluble sugars during salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	stress	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Our results suggest that OsUGE3 improves biomass production, mechanical strength, and salt stress tolerance by reinforcement of cell walls with polysaccharides and it could be targeted for genetic modification to improve rice growth under salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	stress tolerance	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Our results suggest that OsUGE3 improves biomass production, mechanical strength, and salt stress tolerance by reinforcement of cell walls with polysaccharides and it could be targeted for genetic modification to improve rice growth under salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	homeostasis	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Moreover, OsUGE3 overexpression improves the homeostasis of Na(+) and K(+) and induces a higher accumulation of hemicelluloses and soluble sugars during salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	cellulose	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 The OsUGE3 exhibits UDP-galactose/glucose epimerase activity that provides substrates for polysaccharides polymerization, consistent with the increased biosynthesis of cellulose and hemicelluloses and strengthened walls in OsUGE3-OX plants
OsUGE3	Os09g0526700	LOC_Os09g35800	cell wall	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Our results suggest that OsUGE3 improves biomass production, mechanical strength, and salt stress tolerance by reinforcement of cell walls with polysaccharides and it could be targeted for genetic modification to improve rice growth under salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	biomass	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Our results suggest that OsUGE3 improves biomass production, mechanical strength, and salt stress tolerance by reinforcement of cell walls with polysaccharides and it could be targeted for genetic modification to improve rice growth under salt stress
OsUGE3	Os09g0526700	LOC_Os09g35800	biomass production	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	 Our results suggest that OsUGE3 improves biomass production, mechanical strength, and salt stress tolerance by reinforcement of cell walls with polysaccharides and it could be targeted for genetic modification to improve rice growth under salt stress
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	seed	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)	The suppression of UGPase by the introduction of a UGPase1-RNAi construct in wild-type plants nearly eliminated seed set because of the male defect, with developmental retardation similar to the ms-h mutant phenotype, whereas overexpression of UGPase1 in ms-h mutant plants restored male fertility and the transformants produced T(1) seeds that segregated into normal and chalky endosperms
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	seed	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)	Our results suggest that UGPase1 plays a key role in pollen development as well as seed carbohydrate metabolism
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	seed	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	OsUgp1 has recently been reported to be essential for callose deposition during pollen mother cell and meiosis stages as well as for seed carbohydrate metabolism
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	pollen	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	OsUgp1 has recently been reported to be essential for callose deposition during pollen mother cell and meiosis stages as well as for seed carbohydrate metabolism
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	pollen	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	OsUgp2 complements OsUgp1 to fulfill the UGPase’s functions necessary for the full process of pollen development
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	pollen	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)	Our results suggest that UGPase1 plays a key role in pollen development as well as seed carbohydrate metabolism
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	meiosis	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	Pollen mother cells (PMCs) of Ugp1-silenced plants appeared normal before meiosis, but during meiosis, normal callose deposition was disrupted
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	meiosis	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	These results demonstrate that rice Ugp1 is required for callose deposition during PMC meiosis and bridges the apoplastic unloading pathway and pollen development
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	anther development	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	We report a functional characterization of rice Ugp1, which is expressed throughout the plant, with highest expression in florets, especially in pollen during anther development
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	meiosis	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	OsUgp1 has recently been reported to be essential for callose deposition during pollen mother cell and meiosis stages as well as for seed carbohydrate metabolism
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	growth	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	Expressing a double-stranded RNA interference construct in Ugp1-RI plants resulted in complete suppression of both Ugp1 and Ugp2, together with various pleiotropic developmental abnormalities, suggesting that UGPase plays critical roles in plant growth and development
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	anther	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	We report a functional characterization of rice Ugp1, which is expressed throughout the plant, with highest expression in florets, especially in pollen during anther development
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	sterility	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)	In addition, both phenotypes were co-segregated with the UGPase1 transgene in segregating T(1) plants, which demonstrates that UGPase1 has functional roles in both male sterility and the development of a chalky endosperm
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	sterility	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	sterility	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	Ugp1 silencing by RNA interference or cosuppression results in male sterility
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	endosperm	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)	The suppression of UGPase by the introduction of a UGPase1-RNAi construct in wild-type plants nearly eliminated seed set because of the male defect, with developmental retardation similar to the ms-h mutant phenotype, whereas overexpression of UGPase1 in ms-h mutant plants restored male fertility and the transformants produced T(1) seeds that segregated into normal and chalky endosperms
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	endosperm	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)	In addition, both phenotypes were co-segregated with the UGPase1 transgene in segregating T(1) plants, which demonstrates that UGPase1 has functional roles in both male sterility and the development of a chalky endosperm
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	endosperm	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	fertility	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)	The suppression of UGPase by the introduction of a UGPase1-RNAi construct in wild-type plants nearly eliminated seed set because of the male defect, with developmental retardation similar to the ms-h mutant phenotype, whereas overexpression of UGPase1 in ms-h mutant plants restored male fertility and the transformants produced T(1) seeds that segregated into normal and chalky endosperms
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	pollen	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	We report a functional characterization of rice Ugp1, which is expressed throughout the plant, with highest expression in florets, especially in pollen during anther development
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	pollen	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	Pollen mother cells (PMCs) of Ugp1-silenced plants appeared normal before meiosis, but during meiosis, normal callose deposition was disrupted
OsUgp1|Ugp1|UGPase1	Os09g0553200	LOC_Os09g38030	pollen	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	These results demonstrate that rice Ugp1 is required for callose deposition during PMC meiosis and bridges the apoplastic unloading pathway and pollen development
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	stem	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	No transcripts were found in leaf, stem, lemma/palea, ripening grain and florets before the uninucleate microspore developmental stage, but a large quantity of OsUgp2 mRNA was found in pollen at the binucleate and mature stages
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	microspore	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	No transcripts were found in leaf, stem, lemma/palea, ripening grain and florets before the uninucleate microspore developmental stage, but a large quantity of OsUgp2 mRNA was found in pollen at the binucleate and mature stages
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	palea	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	No transcripts were found in leaf, stem, lemma/palea, ripening grain and florets before the uninucleate microspore developmental stage, but a large quantity of OsUgp2 mRNA was found in pollen at the binucleate and mature stages
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	starch	Functional analysis of a rice late pollen-abundant UDP-glucose pyrophosphorylase (OsUgp2) promoter	OsUgp2, a rice UDP-glucose pyrophosphorylase gene, has previously been shown to preferentially express in maturing pollens and plays an important role in pollen starch accumulation
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	lemma	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	No transcripts were found in leaf, stem, lemma/palea, ripening grain and florets before the uninucleate microspore developmental stage, but a large quantity of OsUgp2 mRNA was found in pollen at the binucleate and mature stages
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	pollen	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	Northern blot and RNA in situ hybridization indicated that the expression of OsUgp2 was preferentially in pollen and developmentally regulated
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	pollen	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	No transcripts were found in leaf, stem, lemma/palea, ripening grain and florets before the uninucleate microspore developmental stage, but a large quantity of OsUgp2 mRNA was found in pollen at the binucleate and mature stages
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	pollen	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	The pollen fertility of 16 independent transgenic rice plants was found between 25% and 90%, which was correlated with the amount of OsUgp2 mRNA
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	pollen	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	These results demonstrated that OsUgp2 is a pollen-preferential “late gene and plays a key role during pollen maturation, especially for starch accumulation
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	pollen	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	OsUgp2 complements OsUgp1 to fulfill the UGPase’s functions necessary for the full process of pollen development
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	pollen	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	anther	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	In this study, a full-length cDNA of OsUgp2 was isolated from rice anther
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	fertility	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	The pollen fertility of 16 independent transgenic rice plants was found between 25% and 90%, which was correlated with the amount of OsUgp2 mRNA
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	grain	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	No transcripts were found in leaf, stem, lemma/palea, ripening grain and florets before the uninucleate microspore developmental stage, but a large quantity of OsUgp2 mRNA was found in pollen at the binucleate and mature stages
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	starch	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	These results demonstrated that OsUgp2 is a pollen-preferential “late gene and plays a key role during pollen maturation, especially for starch accumulation
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	starch	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	leaf	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	No transcripts were found in leaf, stem, lemma/palea, ripening grain and florets before the uninucleate microspore developmental stage, but a large quantity of OsUgp2 mRNA was found in pollen at the binucleate and mature stages
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	growth	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	Expressing a double-stranded RNA interference construct in Ugp1-RI plants resulted in complete suppression of both Ugp1 and Ugp2, together with various pleiotropic developmental abnormalities, suggesting that UGPase plays critical roles in plant growth and development
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	pollen	Functional analysis of a rice late pollen-abundant UDP-glucose pyrophosphorylase (OsUgp2) promoter	OsUgp2, a rice UDP-glucose pyrophosphorylase gene, has previously been shown to preferentially express in maturing pollens and plays an important role in pollen starch accumulation
OsUgp2|Ugp2	Os02g0117700	LOC_Os02g02560	pollen	Functional analysis of a rice late pollen-abundant UDP-glucose pyrophosphorylase (OsUgp2) promoter	Functional analysis of a rice late pollen-abundant UDP-glucose pyrophosphorylase (OsUgp2) promoter
OsUGT1	Os04g0692000	LOC_Os04g59550	transporter	Characterization of rice nucleotide sugar transporters capable of transporting UDP-galactose and UDP-glucose	From these, we cloned four putative UDP-galactose transporters, designated OsUGT1, 2, 3 and 4, which exhibited high sequence similarity with Arabidopsis thaliana UDP-galactose transporters
OsUGT4	Os06g0593100	LOC_Os06g39260	transporter	Characterization of rice nucleotide sugar transporters capable of transporting UDP-galactose and UDP-glucose	The results of an in vitro nucleotide sugar transport assay of OsUGTs, carried out with a yeast expression system, suggested that OsUGT4 is a UDP-glucose transporter rather than a UDP-galactose transporter
OsUGT706C2	Os03g0841600	LOC_Os03g62480	tolerance	A UV-B-responsive glycosyltransferase, OsUGT706C2, modulates flavonoid metabolism in rice.	Furthermore, overexpressing OsUGT706C2 can enhance UV-B tolerance by promoting ROS scavenging in rice
OsUGT706C2	Os03g0841600	LOC_Os03g62480	yield	A UV-B-responsive glycosyltransferase, OsUGT706C2, modulates flavonoid metabolism in rice.	Our findings might make it possible to use the glycosyltransferase OsUGT706C2 for crop improvement with respect to UV-B adaptation and/or flavonoid accumulation, which may contribute to stable yield
OsUGT706C2	Os03g0841600	LOC_Os03g62480	glycosyltransferase	A UV-B-responsive glycosyltransferase, OsUGT706C2, modulates flavonoid metabolism in rice.	A UV-B-responsive glycosyltransferase, OsUGT706C2, modulates flavonoid metabolism in rice.
OsUGT706C2	Os03g0841600	LOC_Os03g62480	flavonoid metabolism	A UV-B-responsive glycosyltransferase, OsUGT706C2, modulates flavonoid metabolism in rice.	A UV-B-responsive glycosyltransferase, OsUGT706C2, modulates flavonoid metabolism in rice.
OsUGT706C2	Os03g0841600	LOC_Os03g62480	flavonoid	A UV-B-responsive glycosyltransferase, OsUGT706C2, modulates flavonoid metabolism in rice.	A UV-B-responsive glycosyltransferase, OsUGT706C2, modulates flavonoid metabolism in rice.
OsUGT706D1	Os01g0736300	LOC_Os01g53460	flavone	Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.	Here, we report that the natural variation of rice flavones is mainly determined by OsUGT706D1 (flavone 7-O-glucosyltransferase) and OsUGT707A2 (flavone 5-O-glucosyltransferase).
OsUGT706D1	Os01g0736300	LOC_Os01g53460	glucosyltransferase	Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.	Here, we report that the natural variation of rice flavones is mainly determined by OsUGT706D1 (flavone 7-O-glucosyltransferase) and OsUGT707A2 (flavone 5-O-glucosyltransferase).
OsUGT707A2	Os07g0503900	LOC_Os07g32060	glucosyltransferase	Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.	Here, we report that the natural variation of rice flavones is mainly determined by OsUGT706D1 (flavone 7-O-glucosyltransferase) and OsUGT707A2 (flavone 5-O-glucosyltransferase).
OsUGT707A2	Os07g0503900	LOC_Os07g32060	flavone	Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.	Here, we report that the natural variation of rice flavones is mainly determined by OsUGT706D1 (flavone 7-O-glucosyltransferase) and OsUGT707A2 (flavone 5-O-glucosyltransferase).
OsUGT75A	Os11g0446700	LOC_Os11g25990	submergence	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.
OsUGT75A	Os11g0446700	LOC_Os11g25990	submergence	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 Herein, we report that natural variation of rice coleoptile length subjected to submergence is determined by the glucosyltransferase encoding gene OsUGT75A
OsUGT75A	Os11g0446700	LOC_Os11g25990	submergence	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 OsUGT75A regulates coleoptile length via decreasing free abscisic acid (ABA) and jasmonic acid (JA) levels by promoting glycosylation of these two phytohormones under submergence
OsUGT75A	Os11g0446700	LOC_Os11g25990	seed	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.
OsUGT75A	Os11g0446700	LOC_Os11g25990	jasmonate	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 Moreover, we find that OsUGT75A accelerates coleoptile length through mediating the interactions between JASMONATE ZIMDOMAIN (OsJAZ) and ABSCISIC ACID-INSENSITIVE (OsABI) proteins
OsUGT75A	Os11g0446700	LOC_Os11g25990	seed germination	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.
OsUGT75A	Os11g0446700	LOC_Os11g25990	tolerance	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.
OsUGT75A	Os11g0446700	LOC_Os11g25990	breeding	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 Thus, we propose that OsUGT75A is a useful target in breeding of rice varieties suitable for direct seeding cultivation
OsUGT75A	Os11g0446700	LOC_Os11g25990	abscisic acid	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 OsUGT75A regulates coleoptile length via decreasing free abscisic acid (ABA) and jasmonic acid (JA) levels by promoting glycosylation of these two phytohormones under submergence
OsUGT75A	Os11g0446700	LOC_Os11g25990	abscisic acid	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 Moreover, we find that OsUGT75A accelerates coleoptile length through mediating the interactions between JASMONATE ZIMDOMAIN (OsJAZ) and ABSCISIC ACID-INSENSITIVE (OsABI) proteins
OsUGT75A	Os11g0446700	LOC_Os11g25990	jasmonic	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 OsUGT75A regulates coleoptile length via decreasing free abscisic acid (ABA) and jasmonic acid (JA) levels by promoting glycosylation of these two phytohormones under submergence
OsUGT75A	Os11g0446700	LOC_Os11g25990	jasmonic acid	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 OsUGT75A regulates coleoptile length via decreasing free abscisic acid (ABA) and jasmonic acid (JA) levels by promoting glycosylation of these two phytohormones under submergence
OsUGT75A	Os11g0446700	LOC_Os11g25990	glycosylation	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 OsUGT75A regulates coleoptile length via decreasing free abscisic acid (ABA) and jasmonic acid (JA) levels by promoting glycosylation of these two phytohormones under submergence
OsUGT75A	Os11g0446700	LOC_Os11g25990	submergence tolerance	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.
OsUGT75A	Os11g0446700	LOC_Os11g25990	glucosyltransferase	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	 Herein, we report that natural variation of rice coleoptile length subjected to submergence is determined by the glucosyltransferase encoding gene OsUGT75A
OsUGT90A1	Os04g0305700	LOC_Os04g24110	leaf	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	OsUGT90A1 expression is cold regulated, and its overexpression helps to maintain membrane integrity during cold stress and promotes leaf growth during stress recovery, correlating with reduced levels of reactive oxygen species due to increased antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	root	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	In rice, overexpression of OsUGT90A1 decreases while gene knockout increases root lengths of three-week-old seedlings, indicating that differential expression of this gene may affect phytohormone activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	growth	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	OsUGT90A1 expression is cold regulated, and its overexpression helps to maintain membrane integrity during cold stress and promotes leaf growth during stress recovery, correlating with reduced levels of reactive oxygen species due to increased antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	growth	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Thus, higher OsUGT90A1 expression in chilling tolerant than chilling sensitive accessions helps maintain cell membrane integrity as an abiotic stress tolerance response mechanism to prepare plants to resume growth and development during stress recovery
OsUGT90A1	Os04g0305700	LOC_Os04g24110	development	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Thus, higher OsUGT90A1 expression in chilling tolerant than chilling sensitive accessions helps maintain cell membrane integrity as an abiotic stress tolerance response mechanism to prepare plants to resume growth and development during stress recovery
OsUGT90A1	Os04g0305700	LOC_Os04g24110	salt	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Overexpression of OsUGT90A1 in Arabidopsis moreover improves freezing survival and salt stress tolerance, correlating with enhanced antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	tolerance	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Haplotype differences in the control region of OsUGT90A1 affecting differential expression in chilling tolerant and chilling sensitive rice accessions rather than differences in protein sequences correlate with chilling tolerance phenotypes
OsUGT90A1	Os04g0305700	LOC_Os04g24110	tolerance	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Thus, higher OsUGT90A1 expression in chilling tolerant than chilling sensitive accessions helps maintain cell membrane integrity as an abiotic stress tolerance response mechanism to prepare plants to resume growth and development during stress recovery
OsUGT90A1	Os04g0305700	LOC_Os04g24110	cold stress	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	OsUGT90A1 expression is cold regulated, and its overexpression helps to maintain membrane integrity during cold stress and promotes leaf growth during stress recovery, correlating with reduced levels of reactive oxygen species due to increased antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	abiotic stress	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Thus, higher OsUGT90A1 expression in chilling tolerant than chilling sensitive accessions helps maintain cell membrane integrity as an abiotic stress tolerance response mechanism to prepare plants to resume growth and development during stress recovery
OsUGT90A1	Os04g0305700	LOC_Os04g24110	salt stress	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Overexpression of OsUGT90A1 in Arabidopsis moreover improves freezing survival and salt stress tolerance, correlating with enhanced antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	stress	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.
OsUGT90A1	Os04g0305700	LOC_Os04g24110	stress	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	OsUGT90A1 expression is cold regulated, and its overexpression helps to maintain membrane integrity during cold stress and promotes leaf growth during stress recovery, correlating with reduced levels of reactive oxygen species due to increased antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	stress	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Overexpression of OsUGT90A1 in Arabidopsis moreover improves freezing survival and salt stress tolerance, correlating with enhanced antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	stress	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Thus, higher OsUGT90A1 expression in chilling tolerant than chilling sensitive accessions helps maintain cell membrane integrity as an abiotic stress tolerance response mechanism to prepare plants to resume growth and development during stress recovery
OsUGT90A1	Os04g0305700	LOC_Os04g24110	biotic stress	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Thus, higher OsUGT90A1 expression in chilling tolerant than chilling sensitive accessions helps maintain cell membrane integrity as an abiotic stress tolerance response mechanism to prepare plants to resume growth and development during stress recovery
OsUGT90A1	Os04g0305700	LOC_Os04g24110	chilling	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.
OsUGT90A1	Os04g0305700	LOC_Os04g24110	chilling	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Haplotype differences in the control region of OsUGT90A1 affecting differential expression in chilling tolerant and chilling sensitive rice accessions rather than differences in protein sequences correlate with chilling tolerance phenotypes
OsUGT90A1	Os04g0305700	LOC_Os04g24110	chilling	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Thus, higher OsUGT90A1 expression in chilling tolerant than chilling sensitive accessions helps maintain cell membrane integrity as an abiotic stress tolerance response mechanism to prepare plants to resume growth and development during stress recovery
OsUGT90A1	Os04g0305700	LOC_Os04g24110	plasma membrane	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.
OsUGT90A1	Os04g0305700	LOC_Os04g24110	phytohormone	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	In rice, overexpression of OsUGT90A1 decreases while gene knockout increases root lengths of three-week-old seedlings, indicating that differential expression of this gene may affect phytohormone activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	reactive oxygen species	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	OsUGT90A1 expression is cold regulated, and its overexpression helps to maintain membrane integrity during cold stress and promotes leaf growth during stress recovery, correlating with reduced levels of reactive oxygen species due to increased antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	stress tolerance	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Overexpression of OsUGT90A1 in Arabidopsis moreover improves freezing survival and salt stress tolerance, correlating with enhanced antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	stress tolerance	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	Thus, higher OsUGT90A1 expression in chilling tolerant than chilling sensitive accessions helps maintain cell membrane integrity as an abiotic stress tolerance response mechanism to prepare plants to resume growth and development during stress recovery
OsUGT90A1	Os04g0305700	LOC_Os04g24110	cold	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	OsUGT90A1 expression is cold regulated, and its overexpression helps to maintain membrane integrity during cold stress and promotes leaf growth during stress recovery, correlating with reduced levels of reactive oxygen species due to increased antioxidant enzyme activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	root length	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	In rice, overexpression of OsUGT90A1 decreases while gene knockout increases root lengths of three-week-old seedlings, indicating that differential expression of this gene may affect phytohormone activities
OsUGT90A1	Os04g0305700	LOC_Os04g24110	chilling stress	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.
OsULT1	Os01g0780800	LOC_Os01g57240	abscisic acid	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	Interactions of OsTCP19 with OsABI4 and OsULT1 further suggest its function in modulation of abscisic acid pathways and chromatin structure
OsULT1	Os01g0780800	LOC_Os01g57240	methyltransferase	Rice Trithorax factor ULTRAPETALA 1 (OsULT1) specifically binds to &quot;GAGAG&quot; sequence motif present in Polycomb response elements.	Moreover, OsULT1 interacts with rice SET domain-containing methyltransferase TRX1, suggesting OsULT1 is an integral part of plant Trithorax group complex
OsUMP1	Os03g0583700	LOC_Os03g38720	disease resistance	A natural allele of proteasome maturation factor improves rice resistance to multiple pathogens	A natural allele of proteasome maturation factor improves rice resistance to multiple pathogens
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	chloroplast	Molecular cloning and characterization of OsUPS, a U-box containing E3 ligase gene that respond to phosphate starvation in rice (Oryza sativa)	A self-ubiquitination assay indicated that the bacterially expressed OsUPS protein had E3 ligase activity, and subcellular localization results showed that OsUPS was located in the chloroplast
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	phosphate	Molecular cloning and characterization of OsUPS, a U-box containing E3 ligase gene that respond to phosphate starvation in rice (Oryza sativa)	Here, we present the isolation of a novel U-box protein, U-box containing E3 ligase induced by phosphate starvation (OsUPS), from rice (Oryza sativa)
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	phosphate	Molecular cloning and characterization of OsUPS, a U-box containing E3 ligase gene that respond to phosphate starvation in rice (Oryza sativa)	We found that full-length expression of OsUPS was up-regulated in both rice plants and cell culture in the absence of inorganic phosphate (P(i))
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	phosphate	Molecular cloning and characterization of OsUPS, a U-box containing E3 ligase gene that respond to phosphate starvation in rice (Oryza sativa)	Molecular cloning and characterization of OsUPS, a U-box containing E3 ligase gene that respond to phosphate starvation in rice (Oryza sativa)
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	ja	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	In rice, transient overexpression of OsPUB41 leads to enhanced expression of PR genes and SA as well as JA biosynthetic and response genes
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	ja	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	However, in Arabidopsis, ectopic expression of OsPUB41 results in upregulation of only JA biosynthetic and response genes
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	JA	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	In rice, transient overexpression of OsPUB41 leads to enhanced expression of PR genes and SA as well as JA biosynthetic and response genes
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	JA	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	However, in Arabidopsis, ectopic expression of OsPUB41 results in upregulation of only JA biosynthetic and response genes
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	defense	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	This indicates that the E3 ligase activity of OsPUB41 protein is essential for induction of plant defense responses
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	tolerance	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	Overexpression of OsPUB41 leads to induction of callose deposition, enhanced tolerance to Xoo and Rhizoctonia solani infection in rice and Arabidopsis respectively
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	defense response	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	This indicates that the E3 ligase activity of OsPUB41 protein is essential for induction of plant defense responses
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	immune response	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	Transient overexpression of either of the two biochemically inactive mutants (OsPUB41C40A and OsPUB41V51R) of OsPUB41 in rice and stable transgenics in Arabidopsis ectopically expressing OsPUB41C40A failed to elicit immune responses
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	immune response	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	The results presented here suggest that OsPUB41 is possibly involved in elicitation of CWDE triggered immune responses in rice
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	xoo	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	Overexpression of OsPUB41 leads to induction of callose deposition, enhanced tolerance to Xoo and Rhizoctonia solani infection in rice and Arabidopsis respectively
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	sa	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	In rice, transient overexpression of OsPUB41 leads to enhanced expression of PR genes and SA as well as JA biosynthetic and response genes
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	SA	Overexpression of OsPUB41, a Rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	In rice, transient overexpression of OsPUB41 leads to enhanced expression of PR genes and SA as well as JA biosynthetic and response genes
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	drought	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	drought	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	tolerance	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	abiotic stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 expression was specifically induced by dehydration among various abiotic stresses and abscisic acid (ABA) treatments
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	biotic stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 expression was specifically induced by dehydration among various abiotic stresses and abscisic acid (ABA) treatments
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	abscisic acid	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 expression was specifically induced by dehydration among various abiotic stresses and abscisic acid (ABA) treatments
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	chlorophyll content	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	water loss	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	The Ubi:RNAi-OsPUB41 knock-down and ospub41 suppression mutant plants exhibited enhanced tolerance to drought stress compared with the wild-type rice plants in terms of transpirational water loss, long-term dehydration response, and chlorophyll content
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	stress response	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsUPS|OsPUB41	Os03g0240600	LOC_Os03g13740	drought stress response	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	OsPUB41 plays a negative role in drought stress response through the mediation of OsUBC25 and interacts with OsCLC6, suggesting a putative substrate
OsUPS1	Os12g0503000	LOC_Os12g31860	growth	Allantoin accumulation through overexpression of ureide permease1 improves rice growth under limited nitrogen conditions.	We propose that OsUPS1 is responsible for allantoin partitioning in rice and its overexpression can support plant growth through accumulation of allantoin in sink tissues which can be utilized when N is limiting
OsUPS1	Os12g0503000	LOC_Os12g31860	plasma membrane	Allantoin accumulation through overexpression of ureide permease1 improves rice growth under limited nitrogen conditions.	Here, we show that OsUPS1 is localized in plasma membranes and are highly expressed in vascular tissues of rice
OsUPS1	Os12g0503000	LOC_Os12g31860	plant growth	Allantoin accumulation through overexpression of ureide permease1 improves rice growth under limited nitrogen conditions.	We propose that OsUPS1 is responsible for allantoin partitioning in rice and its overexpression can support plant growth through accumulation of allantoin in sink tissues which can be utilized when N is limiting
OsUsp1	Os07g0673400	LOC_Os07g47620	submergence	The novel ethylene-regulated gene OsUsp1 from rice encodes a member of a plant protein family related to prokaryotic universal stress proteins	Using subtractive hybridization a submergence-induced gene was identified from deepwater rice, OsUsp1, that encodes a homologue of the bacterial universal stress protein family
OsUsp1	Os07g0673400	LOC_Os07g47620	submergence	The novel ethylene-regulated gene OsUsp1 from rice encodes a member of a plant protein family related to prokaryotic universal stress proteins	In the youngest internode of deepwater rice plants, OsUsp1 expression was very strongly induced within 1 h of submergence
OsUsp1	Os07g0673400	LOC_Os07g47620	ethylene	The novel ethylene-regulated gene OsUsp1 from rice encodes a member of a plant protein family related to prokaryotic universal stress proteins	Based on sequence information and on expression data it is hypothesized that OsUSP1 plays a role in ethylene-mediated stress adaptation in rice
OsUsp1	Os07g0673400	LOC_Os07g47620	ethylene	The novel ethylene-regulated gene OsUsp1 from rice encodes a member of a plant protein family related to prokaryotic universal stress proteins	The novel ethylene-regulated gene OsUsp1 from rice encodes a member of a plant protein family related to prokaryotic universal stress proteins
OsV4	Os04g0475500	LOC_Os04g39970	temperature	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress	In this paper, we isolated and characterized a temperature-conditional virescent mutant, OsV4, in rice (Oryza sativa cultivar Jiahua1 (WT, japonica rice variety))
OsV4	Os04g0475500	LOC_Os04g39970	cold stress	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress	These findings suggest that OsV4 plays an important role during early chloroplast development under cold stress in rice
OsV4	Os04g0475500	LOC_Os04g39970	cold stress	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress
OsV4	Os04g0475500	LOC_Os04g39970	leaf	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress
OsV4	Os04g0475500	LOC_Os04g39970	chloroplast	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress	Genetic and molecular analyses uncovered that OsV4 encodes a novel chloroplast-targeted PPR protein including four PPR motifs
OsV4	Os04g0475500	LOC_Os04g39970	chloroplast	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress	These findings suggest that OsV4 plays an important role during early chloroplast development under cold stress in rice
OsV4	Os04g0475500	LOC_Os04g39970	chloroplast	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress
OsV5B	Os08g0416900	LOC_Os08g32130	seedlings	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Differential protein abundances of OsV5A and OsV5B in rice seedlings at different leaf developmental stages were also revealed
OsV5B	Os08g0416900	LOC_Os08g32130	seedlings	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Deficiency of OsV5A and OsV5B occurred in pre-emerged and emerging leaves in osv5a seedlings at 22 °C, leading to reduced POR accumulation and chlorophyll content
OsV5B	Os08g0416900	LOC_Os08g32130	leaf	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Differential protein abundances of OsV5A and OsV5B in rice seedlings at different leaf developmental stages were also revealed
OsV5B	Os08g0416900	LOC_Os08g32130	leaf	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	OsV5A apparently developed a specialized role for regulating POR abundances at the leaf pre-emergence stage while the same function is performed by OsV5B during leaf emergence and expansion
OsV5B	Os08g0416900	LOC_Os08g32130	leaf development	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Differential protein abundances of OsV5A and OsV5B in rice seedlings at different leaf developmental stages were also revealed
OsV5B	Os08g0416900	LOC_Os08g32130	chloroplast	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Both OsV5A and OsV5B are localized in the chloroplast envelope and thylakoid membranes
OsV5B	Os08g0416900	LOC_Os08g32130	oxidative stress	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	OsV5A and OsV5B interact with two rice PORs (OsPORA and OsPORB) inside chloroplasts and they stabilize OsPORB in vitro under oxidative stress
OsV5B	Os08g0416900	LOC_Os08g32130	oxidative	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	OsV5A and OsV5B interact with two rice PORs (OsPORA and OsPORB) inside chloroplasts and they stabilize OsPORB in vitro under oxidative stress
OsV5B	Os08g0416900	LOC_Os08g32130	stress	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	OsV5A and OsV5B interact with two rice PORs (OsPORA and OsPORB) inside chloroplasts and they stabilize OsPORB in vitro under oxidative stress
OsVAMP714	Os10g0154000	LOC_Os10g06540	leaf	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Furthermore, we showed that OsVAMP714 overexpression promotes leaf sheath elongation and that the first 19 amino acids, which are highly conserved between animal and plant VAMP7 proteins, are crucial for normal rice plant growths
OsVAMP714	Os10g0154000	LOC_Os10g06540	resistance	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Disease resistance tests using OsVAMP714 knockdown and overexpressing rice plants demonstrated the involvement of OsVAMP714 in blast resistance
OsVAMP714	Os10g0154000	LOC_Os10g06540	resistance	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	The overexpression of OsVAMP7111, whose product is highly homologous to OsVAMP714, did not enhance blast resistance to rice, implying a potential specificity of OsVAMP714 to blast resistance
OsVAMP714	Os10g0154000	LOC_Os10g06540	resistance	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	We showed that chloroplast localization is critical for the normal OsVAMP714 functioning in blast resistance by analyzing the rice plants overexpressing OsVAMP714 mutants whose products did not localize in the chloroplast
OsVAMP714	Os10g0154000	LOC_Os10g06540	sheath	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Furthermore, we showed that OsVAMP714 overexpression promotes leaf sheath elongation and that the first 19 amino acids, which are highly conserved between animal and plant VAMP7 proteins, are crucial for normal rice plant growths
OsVAMP714	Os10g0154000	LOC_Os10g06540	chloroplast	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	OsVAMP714 was localized to the chloroplast in mesophyll cells and to the cellular periphery in epidermal cells of transgenic rice plant leaves
OsVAMP714	Os10g0154000	LOC_Os10g06540	chloroplast	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	We showed that chloroplast localization is critical for the normal OsVAMP714 functioning in blast resistance by analyzing the rice plants overexpressing OsVAMP714 mutants whose products did not localize in the chloroplast
OsVAMP714	Os10g0154000	LOC_Os10g06540	disease	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Disease resistance tests using OsVAMP714 knockdown and overexpressing rice plants demonstrated the involvement of OsVAMP714 in blast resistance
OsVAMP714	Os10g0154000	LOC_Os10g06540	blast	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Disease resistance tests using OsVAMP714 knockdown and overexpressing rice plants demonstrated the involvement of OsVAMP714 in blast resistance
OsVAMP714	Os10g0154000	LOC_Os10g06540	blast	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	The overexpression of OsVAMP7111, whose product is highly homologous to OsVAMP714, did not enhance blast resistance to rice, implying a potential specificity of OsVAMP714 to blast resistance
OsVAMP714	Os10g0154000	LOC_Os10g06540	blast	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	We showed that chloroplast localization is critical for the normal OsVAMP714 functioning in blast resistance by analyzing the rice plants overexpressing OsVAMP714 mutants whose products did not localize in the chloroplast
OsVAMP714	Os10g0154000	LOC_Os10g06540	disease resistance	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Disease resistance tests using OsVAMP714 knockdown and overexpressing rice plants demonstrated the involvement of OsVAMP714 in blast resistance
OsVAMP714	Os10g0154000	LOC_Os10g06540	blast resistance	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Disease resistance tests using OsVAMP714 knockdown and overexpressing rice plants demonstrated the involvement of OsVAMP714 in blast resistance
OsVAMP714	Os10g0154000	LOC_Os10g06540	blast resistance	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	The overexpression of OsVAMP7111, whose product is highly homologous to OsVAMP714, did not enhance blast resistance to rice, implying a potential specificity of OsVAMP714 to blast resistance
OsVAMP714	Os10g0154000	LOC_Os10g06540	blast resistance	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	We showed that chloroplast localization is critical for the normal OsVAMP714 functioning in blast resistance by analyzing the rice plants overexpressing OsVAMP714 mutants whose products did not localize in the chloroplast
OsVAMP714	Os10g0154000	LOC_Os10g06540	plant growth	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Furthermore, we showed that OsVAMP714 overexpression promotes leaf sheath elongation and that the first 19 amino acids, which are highly conserved between animal and plant VAMP7 proteins, are crucial for normal rice plant growths
OsVHA	None	None	transporter	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars	The OsHKT1, OsHKT2, and OsVHA transporter genes might play important roles in maintaining cytosolic Na(+) homeostasis in rice (Oryza sativa L
OsVHA	None	None	homeostasis	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars	The OsHKT1, OsHKT2, and OsVHA transporter genes might play important roles in maintaining cytosolic Na(+) homeostasis in rice (Oryza sativa L
OsVHA	None	None	salt	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars	Pokkali regulates the expression of OsHKT1, OsHKT2, and OsVHA differently from how the salt-sensitive cv
OsVHA	None	None	salt	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars	Expressions of OsHKT1, OsHKT2, and OsVHA are differentially regulated under NaCl stress in salt-sensitive and salt-tolerant rice (Oryza sativa L.) cultivars
OsVIL2	Os12g0533500	LOC_Os12g34850	flower	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	Here we demonstrated that rice LC2 (OsVIL3) and OsVIL2 (two OsVILs, possible components of PRC2 complex) promote rice flowering
OsVIL2	Os12g0533500	LOC_Os12g34850	flower	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF
OsVIL2	Os12g0533500	LOC_Os12g34850	heading date	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF	Our results showed that expressions of LC2 and OsVIL2 are induced by SD (short-day) conditions and both lc2 mutant and OsVIL2-RNAi lines display delayed heading date, consistent with the reduced expression levels of Hd1 and Hd3a
OsVIL2	Os12g0533500	LOC_Os12g34850	flower	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice	Insertion mutations in OsVIL2 caused late flowering under both long and short days
OsVIL2	Os12g0533500	LOC_Os12g34850	flower	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice	As observed from osvil2, a null mutation of OsEMF2b caused late flowering by increasing OsLFL1 expression and decreasing Ehd1 expression
OsVIL2	Os12g0533500	LOC_Os12g34850	flower	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice	Thus, we conclude that OsVIL2 functions together with PRC2 to induce flowering by repressing OsLFL1
OsVIL2	Os12g0533500	LOC_Os12g34850	flower	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice
OsVIL2	Os12g0533500	LOC_Os12g34850	grain	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.
OsVIL2	Os12g0533500	LOC_Os12g34850	grain	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Mutations in OsVIL2 led to shorter plants and fewer grains whereas its overexpression (OX) enhanced biomass production and grain numbers when compared with the wild type
OsVIL2	Os12g0533500	LOC_Os12g34850	grain	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	We conclude that OsVIL2 improves the production of biomass and grain by suppressing OsCKX2 chromatin
OsVIL2	Os12g0533500	LOC_Os12g34850	grain number	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Mutations in OsVIL2 led to shorter plants and fewer grains whereas its overexpression (OX) enhanced biomass production and grain numbers when compared with the wild type
OsVIL2	Os12g0533500	LOC_Os12g34850	grain yield	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.
OsVIL2	Os12g0533500	LOC_Os12g34850	cytokinin	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Chromatin immunoprecipitation analysis showed that, among the downregulated genes, OsVIL2 was directly associated with chromatins in the promoter region of CYTOKININ OXIDASE/DEHYDROGENASE2 (OsCKX2), a gene responsible for cytokinin degradation
OsVIL2	Os12g0533500	LOC_Os12g34850	biomass	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.
OsVIL2	Os12g0533500	LOC_Os12g34850	biomass	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Mutations in OsVIL2 led to shorter plants and fewer grains whereas its overexpression (OX) enhanced biomass production and grain numbers when compared with the wild type
OsVIL2	Os12g0533500	LOC_Os12g34850	biomass	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	We conclude that OsVIL2 improves the production of biomass and grain by suppressing OsCKX2 chromatin
OsVIL2	Os12g0533500	LOC_Os12g34850	biomass production	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Mutations in OsVIL2 led to shorter plants and fewer grains whereas its overexpression (OX) enhanced biomass production and grain numbers when compared with the wild type
OsVIL2	Os12g0533500	LOC_Os12g34850	tiller	Chromatin Interacting Factor OsVIL2 Is Required for Outgrowth of Axillary Buds in Rice.	In this study, we report that loss-of-function mutants in OsVIL2 showed a phenotype of reduced tiller number in rice
OsVIL2	Os12g0533500	LOC_Os12g34850	tiller	Chromatin Interacting Factor OsVIL2 Is Required for Outgrowth of Axillary Buds in Rice.	Tiller number of double mutant osvil2 ostb1 was similar to that of ostb1 , suggesting that osvil2 is epistatic to ostb1
OsVIL2	Os12g0533500	LOC_Os12g34850	tiller number	Chromatin Interacting Factor OsVIL2 Is Required for Outgrowth of Axillary Buds in Rice.	In this study, we report that loss-of-function mutants in OsVIL2 showed a phenotype of reduced tiller number in rice
OsVIL2	Os12g0533500	LOC_Os12g34850	tiller number	Chromatin Interacting Factor OsVIL2 Is Required for Outgrowth of Axillary Buds in Rice.	Tiller number of double mutant osvil2 ostb1 was similar to that of ostb1 , suggesting that osvil2 is epistatic to ostb1
OsVIL4	Os05g0145400	LOC_Os05g05310	flowering	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice	Consistent with this result, knockout of OsVIL4 gives rise to a late-flowering phenotype similar to that of the osashl1 osashl2 double mutant, suggesting that OsVIL4 is a target of the COMPASS-like complex.
OsVIT1	Os04g0463400	LOC_Os04g38940	transporter	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice
OsVIT1	Os04g0463400	LOC_Os04g38940	sheath	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	In rice, OsVIT1 and OsVIT2 are highly expressed in flag leaf blade and sheath, respectively, and in contrast to OsVIT1, OsVIT2 is highly responsive to Fe treatments
OsVIT1	Os04g0463400	LOC_Os04g38940	iron	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice
OsVIT1	Os04g0463400	LOC_Os04g38940	seed	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	Interestingly, functional disruption of OsVIT1 and OsVIT2 leads to increased Fe/Zn accumulation in rice seeds and a corresponding decrease in the source organ flag leaves, indicating an enhanced Fe/Zn translocation between source and sink organs, which might represent a novel strategy to biofortify Fe/Zn in staple foods
OsVIT1	Os04g0463400	LOC_Os04g38940	seed	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice
OsVIT1	Os04g0463400	LOC_Os04g38940	leaf	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	In rice, OsVIT1 and OsVIT2 are highly expressed in flag leaf blade and sheath, respectively, and in contrast to OsVIT1, OsVIT2 is highly responsive to Fe treatments
OsVIT2	Os09g0396900	LOC_Os09g23300	transporter	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice
OsVIT2	Os09g0396900	LOC_Os09g23300	manganese	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	The accumulation of zinc, copper, and manganese also changed significantly in the shoots of osvit2 plants
OsVIT2	Os09g0396900	LOC_Os09g23300	mitochondria	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Here, we discuss the characterization of a rice vacuolar Fe transporter 2 (OsVIT2) T-DNA insertion line (osvit2) and report that the knockdown of OsVIT2 and mitochondrial Fe transporter (MIT) expression affects seed Fe localization
OsVIT2	Os09g0396900	LOC_Os09g23300	seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Here, we discuss the characterization of a rice vacuolar Fe transporter 2 (OsVIT2) T-DNA insertion line (osvit2) and report that the knockdown of OsVIT2 and mitochondrial Fe transporter (MIT) expression affects seed Fe localization
OsVIT2	Os09g0396900	LOC_Os09g23300	seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	The concentration of Fe increased in osvit2 polished seeds
OsVIT2	Os09g0396900	LOC_Os09g23300	seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Previously, we reported that the expression of OsVIT2 was higher in MIT knockdown (mit-2) plants, and in this study, the accumulation of Fe in mit-2 seeds decreased significantly
OsVIT2	Os09g0396900	LOC_Os09g23300	seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Moreover, changes in the expression of OsVIT2 and MIT affect the concentration and localization of metals in brown rice as well as in polished rice seeds
OsVIT2	Os09g0396900	LOC_Os09g23300	seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed
OsVIT2	Os09g0396900	LOC_Os09g23300	zinc	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	The accumulation of zinc, copper, and manganese also changed significantly in the shoots of osvit2 plants
OsVIT2	Os09g0396900	LOC_Os09g23300	seed	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	Interestingly, functional disruption of OsVIT1 and OsVIT2 leads to increased Fe/Zn accumulation in rice seeds and a corresponding decrease in the source organ flag leaves, indicating an enhanced Fe/Zn translocation between source and sink organs, which might represent a novel strategy to biofortify Fe/Zn in staple foods
OsVIT2	Os09g0396900	LOC_Os09g23300	seed	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice
OsVIT2	Os09g0396900	LOC_Os09g23300	transporter	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	Here, we discuss the characterization of a rice vacuolar Fe transporter 2 (OsVIT2) T-DNA insertion line (osvit2) and report that the knockdown of OsVIT2 and mitochondrial Fe transporter (MIT) expression affects seed Fe localization
OsVIT2	Os09g0396900	LOC_Os09g23300	shoot	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	FINDINGS: osvit2 plants accumulated less Fe in their shoots when grown under normal or excess Fe conditions, while the accumulation of Fe was comparable to that in wild-type (WT) plants under Fe-deficient conditions
OsVIT2	Os09g0396900	LOC_Os09g23300	shoot	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	The accumulation of zinc, copper, and manganese also changed significantly in the shoots of osvit2 plants
OsVIT2	Os09g0396900	LOC_Os09g23300	leaf	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	In rice, OsVIT1 and OsVIT2 are highly expressed in flag leaf blade and sheath, respectively, and in contrast to OsVIT1, OsVIT2 is highly responsive to Fe treatments
OsVIT2	Os09g0396900	LOC_Os09g23300	iron	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	The knockdown of OsVIT2 and MIT affects iron localization in rice seed
OsVIT2	Os09g0396900	LOC_Os09g23300	growth	The knockdown of OsVIT2 and MIT affects iron localization in rice seed	The growth of osvit2 plants was also slow compared to that of WT plants
OsVIT2	Os09g0396900	LOC_Os09g23300	sheath	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	In rice, OsVIT1 and OsVIT2 are highly expressed in flag leaf blade and sheath, respectively, and in contrast to OsVIT1, OsVIT2 is highly responsive to Fe treatments
OsVIT2	Os09g0396900	LOC_Os09g23300	iron	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice
OsVIT2	Os09g0396900	LOC_Os09g23300	leaf	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	 OsVIT2 was expressed in the parenchyma cell bridges of nodes, in the mestome sheath of leaf sheath and aleurone of the caryopsis
OsVIT2	Os09g0396900	LOC_Os09g23300	leaf	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	 Mutation of OsVIT2 resulted in decreased Fe distribution to the leaf sheath, nodes, and aleurone, but increased Fe to the leaf blade and grains
OsVIT2	Os09g0396900	LOC_Os09g23300	sheath	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	 OsVIT2 was expressed in the parenchyma cell bridges of nodes, in the mestome sheath of leaf sheath and aleurone of the caryopsis
OsVIT2	Os09g0396900	LOC_Os09g23300	yield	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	 These results indicate that OsVIT2 is involved in the distribution of Fe to the grains through sequestering Fe into vacuoles in mestome sheath, nodes, and aleurone layer and that knockout of this gene provides a potential way for Fe biofortification without yield penalty
OsVIT2	Os09g0396900	LOC_Os09g23300	transporter	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains
OsVIT2	Os09g0396900	LOC_Os09g23300	transporter	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	 We functionally characterized a vacuolar iron transporter gene, OsVIT2 in terms of expression pattern, cellular localization, and mutant phenotypes
OsVIT2	Os09g0396900	LOC_Os09g23300	iron	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains
OsVIT2	Os09g0396900	LOC_Os09g23300	iron	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	 We functionally characterized a vacuolar iron transporter gene, OsVIT2 in terms of expression pattern, cellular localization, and mutant phenotypes
OsVIT2	Os09g0396900	LOC_Os09g23300	Fe	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	 Mutation of OsVIT2 resulted in decreased Fe distribution to the leaf sheath, nodes, and aleurone, but increased Fe to the leaf blade and grains
OsVIT2	Os09g0396900	LOC_Os09g23300	Fe	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains	 These results indicate that OsVIT2 is involved in the distribution of Fe to the grains through sequestering Fe into vacuoles in mestome sheath, nodes, and aleurone layer and that knockout of this gene provides a potential way for Fe biofortification without yield penalty
OsVIT2	Os09g0396900	LOC_Os09g23300	cell death	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 OsFER2 knock-out in wild-type rice HY did not induce ROS and ferric ion (Fe(3+)) accumulation, lipid peroxidation and hypersensitive response (HR) cell death, and also downregulated the defense-related genes OsPAL1, OsPR1-b, OsRbohB, OsNADP-ME2-3, OsMEK2 and OsMPK1, and vacuolar membrane transporter OsVIT2 expression
OsVIT2	Os09g0396900	LOC_Os09g23300	transporter	Rice iron storage protein ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against Magnaporthe oryzae.	 OsFER2 knock-out in wild-type rice HY did not induce ROS and ferric ion (Fe(3+)) accumulation, lipid peroxidation and hypersensitive response (HR) cell death, and also downregulated the defense-related genes OsPAL1, OsPR1-b, OsRbohB, OsNADP-ME2-3, OsMEK2 and OsMPK1, and vacuolar membrane transporter OsVIT2 expression
OsVMT|OsZIFL12	Os12g0133100	LOC_Os12g03899	root	A vacuolar phytosiderophore transporter alters iron and zinc accumulation in polished rice grains.	At the vegetative stage, knockout of OsVMT resulted in decreased DMA but increased ferric Fe in the root cell sap
OsVMT|OsZIFL12	Os12g0133100	LOC_Os12g03899	shoot	A vacuolar phytosiderophore transporter alters iron and zinc accumulation in polished rice grains.	The expression of OsVMT was induced by Fe deficiency in the roots but not in the shoot basal region and uppermost node
OsVMT|OsZIFL12	Os12g0133100	LOC_Os12g03899	vegetative	A vacuolar phytosiderophore transporter alters iron and zinc accumulation in polished rice grains.	At the vegetative stage, knockout of OsVMT resulted in decreased DMA but increased ferric Fe in the root cell sap
OsVMT|OsZIFL12	Os12g0133100	LOC_Os12g03899	node	A vacuolar phytosiderophore transporter alters iron and zinc accumulation in polished rice grains.	OsVMT is highly expressed in the parenchyma cell bridges of node I where Fe and Zn are highly deposited
OsVMT|OsZIFL12	Os12g0133100	LOC_Os12g03899	node	A vacuolar phytosiderophore transporter alters iron and zinc accumulation in polished rice grains.	The expression of OsVMT was induced by Fe deficiency in the roots but not in the shoot basal region and uppermost node
OsVMT|OsZIFL12	Os12g0133100	LOC_Os12g03899	node	A vacuolar phytosiderophore transporter alters iron and zinc accumulation in polished rice grains.	Taken together, our results indicate that OsVMT is involved in sequestering DMA into the vacuoles and that knockout of this gene enhances accumulation of Fe and Zn in polished rice grains through DMA-increased solubilization of Fe and Zn deposited in the node
OsVOZ1	Os01g0753000	LOC_Os01g54930	resistance	Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice.	However, the osvoz1 osvoz2 double mutant exhibits strong dwarfism and cell death, and silencing of both genes via RNA interference also leads to dwarfism, mild cell death, and enhanced resistance to M
OsVOZ1	Os01g0753000	LOC_Os01g54930	resistance	Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice.	Double silencing of OsVOZ1 and OsVOZ2 in the Piz-t background decreases Piz-t protein accumulation and transcription, reactive oxygen species-dependent cell death, and resistance to M
OsVOZ1	Os01g0753000	LOC_Os01g54930	defense	Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice.	Taken together, these results indicate that OsVOZ1 and OsVOZ2 negatively regulate basal defense but contribute positively to Piz-t-mediated immunity
OsVOZ1	Os01g0753000	LOC_Os01g54930	cell death	Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice.	However, the osvoz1 osvoz2 double mutant exhibits strong dwarfism and cell death, and silencing of both genes via RNA interference also leads to dwarfism, mild cell death, and enhanced resistance to M
OsVOZ1	Os01g0753000	LOC_Os01g54930	cell death	Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice.	Double silencing of OsVOZ1 and OsVOZ2 in the Piz-t background decreases Piz-t protein accumulation and transcription, reactive oxygen species-dependent cell death, and resistance to M
OsVOZ1	Os01g0753000	LOC_Os01g54930	immunity	Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice.	Taken together, these results indicate that OsVOZ1 and OsVOZ2 negatively regulate basal defense but contribute positively to Piz-t-mediated immunity
OsVOZ1	Os01g0753000	LOC_Os01g54930	reactive oxygen species	Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice.	Double silencing of OsVOZ1 and OsVOZ2 in the Piz-t background decreases Piz-t protein accumulation and transcription, reactive oxygen species-dependent cell death, and resistance to M
OsVOZ2	Os05g0515700	LOC_Os05g43950	xoo	Xanthomonas oryzae pv. oryzae type III effector XopN targets OsVOZ2 and a putative thiamine synthase as a virulence factor in rice	These results indicate that XopNKXO85 and OsVOZ2 play important roles both individually and together for Xoo virulence in rice
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Sdr4 expression is positively regulated by OsVP1, a global regulator of seed maturation, and in turn positively regulates potential regulators of seed dormancy and represses the expression of postgerminative genes, suggesting that Sdr4 acts as an intermediate regulator of dormancy in the seed maturation program
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription	The transcription factor VP1 regulates maturation and dormancy in plant seeds by activating genes responsive to the stress hormone abscisic acid (ABA)
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	dormancy	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Sdr4 expression is positively regulated by OsVP1, a global regulator of seed maturation, and in turn positively regulates potential regulators of seed dormancy and represses the expression of postgerminative genes, suggesting that Sdr4 acts as an intermediate regulator of dormancy in the seed maturation program
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	dormancy	Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa)	VP1 has been shown to be a transcription factor essential for seed maturation and dormancy induction
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	The Seed-Specific Transcription Factor VP1 (OSVP1) Is Expressed in Rice Suspension-Cultured Cells	The Seed-Specific Transcription Factor VP1 (OSVP1) Is Expressed in Rice Suspension-Cultured Cells
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	dormancy	A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription	The transcription factor VP1 regulates maturation and dormancy in plant seeds by activating genes responsive to the stress hormone abscisic acid (ABA)
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	dormancy	A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription	Results indicate that TRAB1 is a true trans-acting factor involved in ABA-regulated transcription and reveal a molecular mechanism for the VP1-dependent, ABA-inducible transcription that controls maturation and dormancy in plant embryos
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	transcription factor	The Seed-Specific Transcription Factor VP1 (OSVP1) Is Expressed in Rice Suspension-Cultured Cells	The Seed-Specific Transcription Factor VP1 (OSVP1) Is Expressed in Rice Suspension-Cultured Cells
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa)	VP1 has been shown to be a transcription factor essential for seed maturation and dormancy induction
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	The Seed-Specific Transcription Factor VP1 (OSVP1) Is Expressed in Rice Suspension-Cultured Cells	A seed-specific transcriptional regulator, VP1, is required for the induction of ABA-regulated genes that include Lea (late embryogenesis abundant protein) genes
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	flower	Sequence and functional analyses of the rice gene homologous to the maize Vp1	Osvp1 transcript was detected in developing embryo as early as 10 days after flowering and decreased toward maturity
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	 ABA 	Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1	A fusion gene (Osem-GUS) consisting of the Osem promoter and the bacterial beta-glucuronidase (GUS) gene was constructed and tested in a transient expression system, using protoplasts derived from a suspension-cultured line of rice cells, for activation by ABA and by co-transfection with an expression vector (35S-Osvp1) for the rice VP1 (OSVP1) cDNA
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	 ABA 	Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1	The expression of Osem-GUS was strongly (40- to 150-fold) activated by externally applied ABA and by over-expression of (OS)VP1
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	transcription factor	Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa)	VP1 has been shown to be a transcription factor essential for seed maturation and dormancy induction
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	transcription factor	Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa)	Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa)
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	transcription factor	A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription	The transcription factor VP1 regulates maturation and dormancy in plant seeds by activating genes responsive to the stress hormone abscisic acid (ABA)
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seedlings	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 While, the seedlings with downregulation of OsEMF2b exhibited hyper-sensitive response to ABA and the expression of OsVP1 is upregulated
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	growth	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 We proposed that OsEMF2b may play a pivotal role in seed dormancy and seedling growth by regulating the expression of OsVP1 indirectly or directly
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seedling	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 Yeast one-hybrid assay and ChIP analyses proved that OsEMF2b could bind to the promoter of OsVP1 directly and affected H3K27me3 enrichments of OsVP1 in seedling
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seedling	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 Interestingly, both H3K27me3 and H3K4me3 enrichments of OsVP1 were changed with OsEMF2b mis-expression in seed and seedling
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seedling	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 We proposed that OsEMF2b may play a pivotal role in seed dormancy and seedling growth by regulating the expression of OsVP1 indirectly or directly
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 Interestingly, both H3K27me3 and H3K4me3 enrichments of OsVP1 were changed with OsEMF2b mis-expression in seed and seedling
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 We proposed that OsEMF2b may play a pivotal role in seed dormancy and seedling growth by regulating the expression of OsVP1 indirectly or directly
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	 ABA 	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 While, the seedlings with downregulation of OsEMF2b exhibited hyper-sensitive response to ABA and the expression of OsVP1 is upregulated
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	ABA	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 While, the seedlings with downregulation of OsEMF2b exhibited hyper-sensitive response to ABA and the expression of OsVP1 is upregulated
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	dormancy	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	 We proposed that OsEMF2b may play a pivotal role in seed dormancy and seedling growth by regulating the expression of OsVP1 indirectly or directly
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	resistance	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	 These results indicate that OsVP1 promotes proanthocyanidin accumulation through the interaction among OsVP1, Rc, and OsC1 and then increases the plant's ABA sensitivity and PHS resistance
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	 ABA 	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	 Kasalath and SL9 (an RcRcVP1VP1 substitution line with Nipponbare background) showed more ABA sensitivity than the Nipponbare (rcrcVP1VP1) by the germination assay, and the transcriptional abundance of ABA signal genes OsABI2, OsSnRK2, OsVP1, ABI5, and especially OsVP1 increased in the red pericarp line SL9
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	 ABA 	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	 These results indicate that OsVP1 promotes proanthocyanidin accumulation through the interaction among OsVP1, Rc, and OsC1 and then increases the plant's ABA sensitivity and PHS resistance
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	ABA	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	 Kasalath and SL9 (an RcRcVP1VP1 substitution line with Nipponbare background) showed more ABA sensitivity than the Nipponbare (rcrcVP1VP1) by the germination assay, and the transcriptional abundance of ABA signal genes OsABI2, OsSnRK2, OsVP1, ABI5, and especially OsVP1 increased in the red pericarp line SL9
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	ABA	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	 These results indicate that OsVP1 promotes proanthocyanidin accumulation through the interaction among OsVP1, Rc, and OsC1 and then increases the plant's ABA sensitivity and PHS resistance
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	pericarp	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	 Kasalath and SL9 (an RcRcVP1VP1 substitution line with Nipponbare background) showed more ABA sensitivity than the Nipponbare (rcrcVP1VP1) by the germination assay, and the transcriptional abundance of ABA signal genes OsABI2, OsSnRK2, OsVP1, ABI5, and especially OsVP1 increased in the red pericarp line SL9
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	pericarp	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	 Moreover, OsVP1 can directly bind Rc (bHLH) promoter by yeast one-hybrid, which activates Rc and OsLAR expression in red pericarp rice
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	OsVP1 and Sdr4 play an important role in regulating seed dormancy that involved in multiple metabolism and regulatory pathways
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	 The weakened dormancy of mutants indicated that the functions of OsVP1 and Sdr4 are required for normal early seed dormancy
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	 These results suggest that OsVP1 and Sdr4 play an important role in regulating seed dormancy by multiple metabolism and regulatory pathways
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	dormancy	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	dormancy	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	OsVP1 and Sdr4 play an important role in regulating seed dormancy that involved in multiple metabolism and regulatory pathways
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	dormancy	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	 The weakened dormancy of mutants indicated that the functions of OsVP1 and Sdr4 are required for normal early seed dormancy
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	dormancy	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	 These results suggest that OsVP1 and Sdr4 play an important role in regulating seed dormancy by multiple metabolism and regulatory pathways
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed dormancy	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed dormancy	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	OsVP1 and Sdr4 play an important role in regulating seed dormancy that involved in multiple metabolism and regulatory pathways
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed dormancy	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	 The weakened dormancy of mutants indicated that the functions of OsVP1 and Sdr4 are required for normal early seed dormancy
OSVP1|VP1	Os01g0911700	LOC_Os01g68370	seed dormancy	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	 These results suggest that OsVP1 and Sdr4 play an important role in regulating seed dormancy by multiple metabolism and regulatory pathways
OsVPE2	Os01g0559600	LOC_Os01g37910	cell death	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice
OsVPE2	Os01g0559600	LOC_Os01g37910	stress	Identification of vacuolar phosphate efflux transporters in land plants.	Vacuolar Pi content was higher in the loss-of-function Osvpe1<U+2009>Osvpe2 double mutant than in wild type, particularly under low-Pi stress
OsVPE2	Os01g0559600	LOC_Os01g37910	Pi	Identification of vacuolar phosphate efflux transporters in land plants.	Vacuolar Pi content was higher in the loss-of-function Osvpe1<U+2009>Osvpe2 double mutant than in wild type, particularly under low-Pi stress
OsVPE2	Os01g0559600	LOC_Os01g37910	Pi	Identification of vacuolar phosphate efflux transporters in land plants.	Overexpression of either OsVPE1 or OsVPE2 in transgenic plants reduced vacuolar Pi content, consistent with a role in vacuolar Pi efflux
OsVPE2	Os01g0559600	LOC_Os01g37910	pi	Identification of vacuolar phosphate efflux transporters in land plants.	Vacuolar Pi content was higher in the loss-of-function Osvpe1<U+2009>Osvpe2 double mutant than in wild type, particularly under low-Pi stress
OsVPE2	Os01g0559600	LOC_Os01g37910	pi	Identification of vacuolar phosphate efflux transporters in land plants.	Overexpression of either OsVPE1 or OsVPE2 in transgenic plants reduced vacuolar Pi content, consistent with a role in vacuolar Pi efflux
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	seed	Identification, cDNA cloning and possible roles of seed-specific rice asparaginyl endopeptidase, REP-2	Northern blot analysis indicated that REP-2 mRNA was expressed in both maturing and germinating seeds
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	seed	Identification, cDNA cloning and possible roles of seed-specific rice asparaginyl endopeptidase, REP-2	Incubation of the de-embryonated seeds in 10(-6) M gibberellic acid induced the production of large amounts of REP-1, whereas REP-2beta levels declined rapidly
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	seed	Identification, cDNA cloning and possible roles of seed-specific rice asparaginyl endopeptidase, REP-2	Identification, cDNA cloning and possible roles of seed-specific rice asparaginyl endopeptidase, REP-2
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	cell death	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	leaf	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Moreover, we found that suppression of OsVPE3 caused decreased leaf width and guard cell length in rice
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	development	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	development	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Therefore, we concluded that OsVPE3 plays a crucial role in vacuole-mediated PCD and in stomatal development in rice
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	salt	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	salt	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Survival rate and chlorophyll retention analyses showed that suppression of OsVPE3 clearly enhanced salt stress tolerance in transgenic rice compared with wild type
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	salt	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Taken together, these results indicated that suppression of OsVPE3 enhances salt tolerance by attenuating vacuole rupture during PCD
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	tolerance	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	tolerance	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Survival rate and chlorophyll retention analyses showed that suppression of OsVPE3 clearly enhanced salt stress tolerance in transgenic rice compared with wild type
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	tolerance	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Taken together, these results indicated that suppression of OsVPE3 enhances salt tolerance by attenuating vacuole rupture during PCD
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	salt tolerance	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	salt tolerance	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Taken together, these results indicated that suppression of OsVPE3 enhances salt tolerance by attenuating vacuole rupture during PCD
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	salt stress	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Survival rate and chlorophyll retention analyses showed that suppression of OsVPE3 clearly enhanced salt stress tolerance in transgenic rice compared with wild type
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	cell death	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	stress	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Survival rate and chlorophyll retention analyses showed that suppression of OsVPE3 clearly enhanced salt stress tolerance in transgenic rice compared with wild type
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	stomatal	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Therefore, we concluded that OsVPE3 plays a crucial role in vacuole-mediated PCD and in stomatal development in rice
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	stomata	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	PCD	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Taken together, these results indicated that suppression of OsVPE3 enhances salt tolerance by attenuating vacuole rupture during PCD
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	PCD	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Therefore, we concluded that OsVPE3 plays a crucial role in vacuole-mediated PCD and in stomatal development in rice
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	stress tolerance	Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Survival rate and chlorophyll retention analyses showed that suppression of OsVPE3 clearly enhanced salt stress tolerance in transgenic rice compared with wild type
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	seed	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Endogenous hydrogen peroxide (H2O2) is involved in regulating the gibberellic acid-induced programmed cell death (PCD) of the aleurone layers by cooperating with OsVPE3 during rice seed germination
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	seed germination	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Endogenous hydrogen peroxide (H2O2) is involved in regulating the gibberellic acid-induced programmed cell death (PCD) of the aleurone layers by cooperating with OsVPE3 during rice seed germination
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	cell death	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Endogenous hydrogen peroxide (H2O2) is involved in regulating the gibberellic acid-induced programmed cell death (PCD) of the aleurone layers by cooperating with OsVPE3 during rice seed germination
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	ga	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Further experiments indicated that GA up-regulated the OsVPE3 transcript and VPE activity, and the effect was reversed by DPI
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	GA	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Further experiments indicated that GA up-regulated the OsVPE3 transcript and VPE activity, and the effect was reversed by DPI
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	PCD	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	PCD	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Furthermore, Ac-YVAD-CMK significantly blocked H2O2 accumulation, and DPI + Ac-YVAD-CMK had a more significant inhibitory effect compared with DPI alone, resulting in the delayed PCD, suggesting that OsVPE3 regulates PCD by promoting H2O2 generation
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	PCD	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Meanwhile, DPI significantly inhibited the OsVPE3 transcript and VPE activity, and in turn delayed PCD occurrence, suggesting that the H2O2 produced by the NOX pathway may regulate PCD by up-regulating the OsVPE3 transcript
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	PCD	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Thus, the endogenous H2O2 produced by the NOX pathway mediates the GA-induced PCD of rice aleurone layers by interacting with OsVPE3
OsVPE3|REP-2	Os02g0644000	LOC_Os02g43010	programmed cell death	Interaction between endogenous H 2 O 2 and OsVPE3 in the GA-induced PCD of rice aleurone layers	Endogenous hydrogen peroxide (H2O2) is involved in regulating the gibberellic acid-induced programmed cell death (PCD) of the aleurone layers by cooperating with OsVPE3 during rice seed germination
OsVPE4	Os05g0593900	LOC_Os05g51570	cell death	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice
OsVPS2	Os03g0639800	LOC_Os03g43860	R protein	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	The LRD6-6 protein co-localizes with the MVBs marker protein RabF1/ARA6 and interacts with ESCRT-III components OsSNF7 and OsVPS2
OsVPS22	Os09g0529700	LOC_Os09g36020	grain filling	Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality	In summary, our data suggest that OsVPS22 may be required for seedling viability and grain filling in rice, thus providing a valuable resource for further exploration of the functions of the ESCRTing machinery in plants
OsVPS22	Os09g0529700	LOC_Os09g36020	grain	Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality	In summary, our data suggest that OsVPS22 may be required for seedling viability and grain filling in rice, thus providing a valuable resource for further exploration of the functions of the ESCRTing machinery in plants
OsVPS22	Os09g0529700	LOC_Os09g36020	seedling	Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality	In summary, our data suggest that OsVPS22 may be required for seedling viability and grain filling in rice, thus providing a valuable resource for further exploration of the functions of the ESCRTing machinery in plants
OsVQ13	Os03g0676400	LOC_Os03g47280	resistance	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	The transgenic rice plants overexpressing OsVQ13 exhibited a JA-hypersensitive phenotype and increased JA-induced resistance to Xanthomonas oryzae pv
OsVQ13	Os03g0676400	LOC_Os03g47280	grain	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.
OsVQ13	Os03g0676400	LOC_Os03g47280	grain size	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.
OsVQ13	Os03g0676400	LOC_Os03g47280	cytoplasm	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	OsVQ13 was primarily located in the nucleus and cytoplasm
OsVQ13	Os03g0676400	LOC_Os03g47280	nucleus	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	OsVQ13 was primarily located in the nucleus and cytoplasm
OsVQ13	Os03g0676400	LOC_Os03g47280	jasmonic	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.
OsVQ13	Os03g0676400	LOC_Os03g47280	jasmonic acid	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.
OsVQ13	Os03g0676400	LOC_Os03g47280	ja	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	In this study, we investigated the role of the JA-responsive valine-glutamine (VQ)-motif-containing protein OsVQ13 in JA signaling in rice
OsVQ13	Os03g0676400	LOC_Os03g47280	ja	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	These results indicated that OsVQ13 positively regulated JA signaling by activating the OsMPK6-OsWRKY45 signaling pathway in rice
OsVQ13	Os03g0676400	LOC_Os03g47280	JA	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	In this study, we investigated the role of the JA-responsive valine-glutamine (VQ)-motif-containing protein OsVQ13 in JA signaling in rice
OsVQ13	Os03g0676400	LOC_Os03g47280	JA	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice.	These results indicated that OsVQ13 positively regulated JA signaling by activating the OsMPK6-OsWRKY45 signaling pathway in rice
OsVQ25	Os06g0666400	LOC_Os06g45570	growth	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	 Knockout mutants of OsVQ25 exhibit enhanced resistance to both pathogens without a growth penalty
OsVQ25	Os06g0666400	LOC_Os06g45570	brassinosteroid	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	 OsWRKY53 downstream defense-related genes and brassinosteroid signaling genes are upregulated in osvq25 mutants
OsVQ25	Os06g0666400	LOC_Os06g45570	Brassinosteroid	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	 OsWRKY53 downstream defense-related genes and brassinosteroid signaling genes are upregulated in osvq25 mutants
OsVQ25	Os06g0666400	LOC_Os06g45570	Brassinosteroid Signaling	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	 OsWRKY53 downstream defense-related genes and brassinosteroid signaling genes are upregulated in osvq25 mutants
OsVQ25	Os06g0666400	LOC_Os06g45570	resistance	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	 Knockout mutants of OsVQ25 exhibit enhanced resistance to both pathogens without a growth penalty
OsVQ25	Os06g0666400	LOC_Os06g45570	immunity	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	 Furthermore, OsVQ25 interacts with and suppresses the transcriptional activity of OsWRKY53, a positive regulator of plant immunity
OsVQ25	Os06g0666400	LOC_Os06g45570	xoo	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	 oryzae and Xoo by interacting with and promoting OsVQ25 degradation via the 26S proteasome pathway
OsVQ25	Os06g0666400	LOC_Os06g45570	Xoo	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	 oryzae and Xoo by interacting with and promoting OsVQ25 degradation via the 26S proteasome pathway
OsVQ25	Os06g0666400	LOC_Os06g45570	 xoo 	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	 oryzae and Xoo by interacting with and promoting OsVQ25 degradation via the 26S proteasome pathway
OsVST1	Os08g0141300	LOC_Os08g04620	root	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	OsVST1 mutants have shorter primary roots, decreased root meristem size, and a more compact RSA
OsVST1	Os08g0141300	LOC_Os08g04620	root	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	Expression of OsVST1 largely complements the short root length and reduced plant height in the Arabidopsis triple mutant, supporting conservation of function between rice and Arabidopsis VST proteins
OsVST1	Os08g0141300	LOC_Os08g04620	grain	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	In a field trial, mutations in OsVST1 did not adversely affect grain yield, suggesting that modulation of this gene could be used as a way to optimize RSA without an inherent yield penalty
OsVST1	Os08g0141300	LOC_Os08g04620	grain yield	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	In a field trial, mutations in OsVST1 did not adversely affect grain yield, suggesting that modulation of this gene could be used as a way to optimize RSA without an inherent yield penalty
OsVST1	Os08g0141300	LOC_Os08g04620	yield	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	In a field trial, mutations in OsVST1 did not adversely affect grain yield, suggesting that modulation of this gene could be used as a way to optimize RSA without an inherent yield penalty
OsVST1	Os08g0141300	LOC_Os08g04620	meristem	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	OsVST1 mutants have shorter primary roots, decreased root meristem size, and a more compact RSA
OsVST1	Os08g0141300	LOC_Os08g04620	height	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	Expression of OsVST1 largely complements the short root length and reduced plant height in the Arabidopsis triple mutant, supporting conservation of function between rice and Arabidopsis VST proteins
OsVST1	Os08g0141300	LOC_Os08g04620	plant height	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	Expression of OsVST1 largely complements the short root length and reduced plant height in the Arabidopsis triple mutant, supporting conservation of function between rice and Arabidopsis VST proteins
OsVST1	Os08g0141300	LOC_Os08g04620	primary root	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	OsVST1 mutants have shorter primary roots, decreased root meristem size, and a more compact RSA
OsVST1	Os08g0141300	LOC_Os08g04620	root length	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	Expression of OsVST1 largely complements the short root length and reduced plant height in the Arabidopsis triple mutant, supporting conservation of function between rice and Arabidopsis VST proteins
OsVST1	Os08g0141300	LOC_Os08g04620	root meristem	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	OsVST1 mutants have shorter primary roots, decreased root meristem size, and a more compact RSA
OsVST1	Os08g0141300	LOC_Os08g04620	root meristem size	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	OsVST1 mutants have shorter primary roots, decreased root meristem size, and a more compact RSA
OsVTC1-3|OsMPG3	Os03g0268400	LOC_Os03g16150	pyrophosphorylase	Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis.	Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis.
OsVTE1	Os02g0276500	LOC_Os02g17650	abiotic stress	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	OsVTE1 was induced significantly by abiotic stresses such as high salt, H(2)O(2), drought, cold and by the plant hormones ABA and salicylic acid
OsVTE1	Os02g0276500	LOC_Os02g17650	stem	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	The tissue-specific expression pattern and OsVTE1-promoter GUS activity assay showed that OsVTE1 was mainly expressed in the leaf, and also could be detected in the root, stem and panicle
OsVTE1	Os02g0276500	LOC_Os02g17650	panicle	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	The tissue-specific expression pattern and OsVTE1-promoter GUS activity assay showed that OsVTE1 was mainly expressed in the leaf, and also could be detected in the root, stem and panicle
OsVTE1	Os02g0276500	LOC_Os02g17650	salt	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	OsVTE1 was induced significantly by abiotic stresses such as high salt, H(2)O(2), drought, cold and by the plant hormones ABA and salicylic acid
OsVTE1	Os02g0276500	LOC_Os02g17650	salt	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	Compared with control plants, transgenic plants with Os-VTE1 RNA interference (OsVTE1-RNAi) were more sensitive to salt stress whereas, in contrast, transgenic plants overexpressing OsVTE1 (OsVTE1-OX) showed higher tolerance to salt stress
OsVTE1	Os02g0276500	LOC_Os02g17650	drought	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	OsVTE1 was induced significantly by abiotic stresses such as high salt, H(2)O(2), drought, cold and by the plant hormones ABA and salicylic acid
OsVTE1	Os02g0276500	LOC_Os02g17650	salicylic acid	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	OsVTE1 was induced significantly by abiotic stresses such as high salt, H(2)O(2), drought, cold and by the plant hormones ABA and salicylic acid
OsVTE1	Os02g0276500	LOC_Os02g17650	ABA	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	OsVTE1 was induced significantly by abiotic stresses such as high salt, H(2)O(2), drought, cold and by the plant hormones ABA and salicylic acid
OsVTE1	Os02g0276500	LOC_Os02g17650	salt stress	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	Compared with control plants, transgenic plants with Os-VTE1 RNA interference (OsVTE1-RNAi) were more sensitive to salt stress whereas, in contrast, transgenic plants overexpressing OsVTE1 (OsVTE1-OX) showed higher tolerance to salt stress
OsVTE1	Os02g0276500	LOC_Os02g17650	root	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	The tissue-specific expression pattern and OsVTE1-promoter GUS activity assay showed that OsVTE1 was mainly expressed in the leaf, and also could be detected in the root, stem and panicle
OsVTE1	Os02g0276500	LOC_Os02g17650	leaf	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	The tissue-specific expression pattern and OsVTE1-promoter GUS activity assay showed that OsVTE1 was mainly expressed in the leaf, and also could be detected in the root, stem and panicle
OsWAK1	Os11g0690066	None	sa	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	OsWAK1 was also induced after treatment by mechanical wounding, SA and MeJA, but not by ABA
OsWAK1	Os11g0690066	None	growth	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	However, OsWAK1 expression was undetectable in leaves, stems and flowers but very weak in roots under normal growth conditions
OsWAK1	Os11g0690066	None	stem	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	However, OsWAK1 expression was undetectable in leaves, stems and flowers but very weak in roots under normal growth conditions
OsWAK1	Os11g0690066	None	magnaporthe oryzae	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	Northern blotting analysis showed that infection of the rice blast fungus, Magnaporthe oryzae significantly induced the OsWAK1 transcripts, and the accumulation of OsWAK1 mRNA occurred earlier and was more abundant in rice leaves infected with an incompatible race than with a compatible race of the blast fungus
OsWAK1	Os11g0690066	None	disease	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	This provides functional evidence that induction of OsWAK1 as a novel RLK plays important roles in plant disease resistance
OsWAK1	Os11g0690066	None	disease	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance
OsWAK1	Os11g0690066	None	flower	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	However, OsWAK1 expression was undetectable in leaves, stems and flowers but very weak in roots under normal growth conditions
OsWAK1	Os11g0690066	None	transcription regulator	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	OsWAK1 not only has the ability of autophosphorylation but also can phosphorylate OsRFP1, a putative transcription regulator recently identified in rice
OsWAK1	Os11g0690066	None	root	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	However, OsWAK1 expression was undetectable in leaves, stems and flowers but very weak in roots under normal growth conditions
OsWAK1	Os11g0690066	None	blast	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	Northern blotting analysis showed that infection of the rice blast fungus, Magnaporthe oryzae significantly induced the OsWAK1 transcripts, and the accumulation of OsWAK1 mRNA occurred earlier and was more abundant in rice leaves infected with an incompatible race than with a compatible race of the blast fungus
OsWAK1	Os11g0690066	None	blast	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance
OsWAK1	Os11g0690066	None	cell wall	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	Plasmolysis experiments further revealed OsWAK1 is associated with the cell wall
OsWAK1	Os11g0690066	None	defense	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	These results imply that OsWAK1 is a novel gene involved in plant defense
OsWAK1	Os11g0690066	None	disease resistance	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	This provides functional evidence that induction of OsWAK1 as a novel RLK plays important roles in plant disease resistance
OsWAK1	Os11g0690066	None	disease resistance	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance
OsWAK1	Os11g0690066	None	blast disease	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance
OsWAK1	Os11g0690066	None	resistant	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance	Furthermore, six transgenic rice lines with constitutive expression of OsWAK1 became resistant to the compatible race
OsWAK11	Os02g0111600	LOC_Os02g02120	Kinase	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.
OsWAK11	Os02g0111600	LOC_Os02g02120	brassinosteroid	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.
OsWAK11	Os02g0111600	LOC_Os02g02120	BR	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	 OsWAK11 directly binds and phosphorylates the BR receptor OsBRI1 at residue Thr752, within a motif conserved across most monocot graminaceous crops, thus hindering OsBRI1 interaction with its co-receptor OsSERK1/OsBAK1 and inhibiting BR signaling
OsWAK11	Os02g0111600	LOC_Os02g02120	BR	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	 OsWAK11 is stabilized in light but is degraded in darkness, in a process triggered by changes in the ratio of methyl-esterified to de-methyl-esterified pectin, creating fluctuations in plant BR signaling in response to day and night alternation
OsWAK11	Os02g0111600	LOC_Os02g02120	Brassinosteroid	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.
OsWAK11	Os02g0111600	LOC_Os02g02120	BR signaling	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	 OsWAK11 directly binds and phosphorylates the BR receptor OsBRI1 at residue Thr752, within a motif conserved across most monocot graminaceous crops, thus hindering OsBRI1 interaction with its co-receptor OsSERK1/OsBAK1 and inhibiting BR signaling
OsWAK11	Os02g0111600	LOC_Os02g02120	BR signaling	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	 OsWAK11 is stabilized in light but is degraded in darkness, in a process triggered by changes in the ratio of methyl-esterified to de-methyl-esterified pectin, creating fluctuations in plant BR signaling in response to day and night alternation
OsWAK11	Os02g0111600	LOC_Os02g02120	kinase	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.
OsWAK11	Os02g0111600	LOC_Os02g02120	Brassinosteroid Signaling	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.
OsWAK11	Os02g0111600	LOC_Os02g02120	cell wall	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.
OsWAK11	Os02g0111600	LOC_Os02g02120	cell wall	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	 We conclude that OsWAK11 is a cell wall monitor that regulates cell elongation rates to adapt to the environment from the outside in, which complements the well-established inside-out signaling pathway affecting cell elongation in plants
OsWAK11	Os02g0111600	LOC_Os02g02120	cell elongation	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.
OsWAK11	Os02g0111600	LOC_Os02g02120	cell elongation	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	 Our data show that OsWAK11 controls several important agronomical traits by regulating cell elongation in rice
OsWAK11	Os02g0111600	LOC_Os02g02120	cell elongation	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	 We conclude that OsWAK11 is a cell wall monitor that regulates cell elongation rates to adapt to the environment from the outside in, which complements the well-established inside-out signaling pathway affecting cell elongation in plants
OsWAK11	Os02g0111600	LOC_Os02g02120	 BR 	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	 OsWAK11 directly binds and phosphorylates the BR receptor OsBRI1 at residue Thr752, within a motif conserved across most monocot graminaceous crops, thus hindering OsBRI1 interaction with its co-receptor OsSERK1/OsBAK1 and inhibiting BR signaling
OsWAK11	Os02g0111600	LOC_Os02g02120	 BR 	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	 OsWAK11 is stabilized in light but is degraded in darkness, in a process triggered by changes in the ratio of methyl-esterified to de-methyl-esterified pectin, creating fluctuations in plant BR signaling in response to day and night alternation
OsWAK11	Os02g0111600	LOC_Os02g02120	receptor kinase	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	resistance	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative regulator of blast resistance
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	blast	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative regulator of blast resistance
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	blast resistance	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative regulator of blast resistance
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	Kinase	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Meanwhile, in vitro kinase assays and salt tolerance analyses showed that OsWAK112 possesses kinase activity and that it plays a negative role in the response of plants to salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	kinase	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Meanwhile, in vitro kinase assays and salt tolerance analyses showed that OsWAK112 possesses kinase activity and that it plays a negative role in the response of plants to salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	salt	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Overexpression of OsWAK112 in rice and heterologous expression of OsWAK112 in Arabidopsis significantly decreased plant survival under conditions of salt stress, while knocking down the OsWAK112 in rice increased plant survival under salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	salt	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Meanwhile, in vitro kinase assays and salt tolerance analyses showed that OsWAK112 possesses kinase activity and that it plays a negative role in the response of plants to salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	salt	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 In addition, OsWAK112 interacts with S-adenosyl-L-methionine synthetase (SAMS) 1/2/3, which catalyzes SAM synthesis from ATP and L-methionine, and promotes OsSAMS1 degradation under salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	salt	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 These results indicate that OsWAK112 negatively regulates plant salt responses by inhibiting ethylene production, possibly via direct binding with OsSAMS1/2/3
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	tolerance	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Meanwhile, in vitro kinase assays and salt tolerance analyses showed that OsWAK112 possesses kinase activity and that it plays a negative role in the response of plants to salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	ethylene	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 These results indicate that OsWAK112 negatively regulates plant salt responses by inhibiting ethylene production, possibly via direct binding with OsSAMS1/2/3
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	salt tolerance	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Meanwhile, in vitro kinase assays and salt tolerance analyses showed that OsWAK112 possesses kinase activity and that it plays a negative role in the response of plants to salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	salt stress	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Overexpression of OsWAK112 in rice and heterologous expression of OsWAK112 in Arabidopsis significantly decreased plant survival under conditions of salt stress, while knocking down the OsWAK112 in rice increased plant survival under salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	salt stress	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Meanwhile, in vitro kinase assays and salt tolerance analyses showed that OsWAK112 possesses kinase activity and that it plays a negative role in the response of plants to salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	salt stress	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 In addition, OsWAK112 interacts with S-adenosyl-L-methionine synthetase (SAMS) 1/2/3, which catalyzes SAM synthesis from ATP and L-methionine, and promotes OsSAMS1 degradation under salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	stress	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Overexpression of OsWAK112 in rice and heterologous expression of OsWAK112 in Arabidopsis significantly decreased plant survival under conditions of salt stress, while knocking down the OsWAK112 in rice increased plant survival under salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	stress	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 Meanwhile, in vitro kinase assays and salt tolerance analyses showed that OsWAK112 possesses kinase activity and that it plays a negative role in the response of plants to salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	stress	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 In addition, OsWAK112 interacts with S-adenosyl-L-methionine synthetase (SAMS) 1/2/3, which catalyzes SAM synthesis from ATP and L-methionine, and promotes OsSAMS1 degradation under salt stress
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	cell wall	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 OsWAK112 is universally expressed in plant and associated with cell wall
OsWAK112d|OsWAK112	Os10g0180800	LOC_Os10g10130	ethylene production	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	 These results indicate that OsWAK112 negatively regulates plant salt responses by inhibiting ethylene production, possibly via direct binding with OsSAMS1/2/3
OsWAK14	Os02g0632800	LOC_Os02g42150	blast resistance	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative  regulator of blast resistance
OsWAK25	Os03g0225700	LOC_Os03g12470	wounding	Overexpression of Rice Wall-Associated Kinase 25 (OsWAK25) Alters Resistance to Bacterial and Fungal Pathogens.	Here, we show that wounding and BTH treatments induce OsWAK25 transcript expression in rice
OsWAK25	Os03g0225700	LOC_Os03g12470	lesion	Overexpression of Rice Wall-Associated Kinase 25 (OsWAK25) Alters Resistance to Bacterial and Fungal Pathogens.	We generated OsWAK25 overexpression lines and show that these lines exhibit a lesion mimic phenotype and enhanced expression of rice NH1 (NPR1 homolog 1), OsPAL2, PBZ1 and PR10
OsWAK25	Os03g0225700	LOC_Os03g12470	lesion mimic	Overexpression of Rice Wall-Associated Kinase 25 (OsWAK25) Alters Resistance to Bacterial and Fungal Pathogens.	We generated OsWAK25 overexpression lines and show that these lines exhibit a lesion mimic phenotype and enhanced expression of rice NH1 (NPR1 homolog 1), OsPAL2, PBZ1 and PR10
OsWAK92	Os09g0562600	LOC_Os09g38910	resistance	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative regulator of blast resistance
OsWAK92	Os09g0562600	LOC_Os09g38910	blast	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative regulator of blast resistance
OsWAK92	Os09g0562600	LOC_Os09g38910	blast resistance	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	While OsWAK14, OsWAK91 and OsWAK92 positively regulate quantitative resistance, OsWAK112d is a negative regulator of blast resistance
OsWAKL21	Os12g0595800	LOC_Os12g40419	immune response	Dual Activities of Receptor-like Kinase OsWAKL21.2 Induce Immune Responses.	2 is necessary to activate rice immune responses, whereas in Arabidopsis, OsWAKL21
OsWAKL21	Os12g0595800	LOC_Os12g40419	Kinase	Dual Activities of Receptor-like Kinase OsWAKL21.2 Induce Immune Responses.	Interestingly, kinase activity of OsWAKL21
OsWAKL21	Os12g0595800	LOC_Os12g40419	kinase	Dual Activities of Receptor-like Kinase OsWAKL21.2 Induce Immune Responses.	Interestingly, kinase activity of OsWAKL21
OsWDR5a|OsWDR5	Os03g0725400	LOC_Os03g51550	heading date	The COMPASS-like complex promotes flowering and panicle branching in rice.	Plants in which OsWDR5a or OsTrx1 expression was decreased by RNA interference produced fewer secondary branches and less grain, and exhibited a delayed heading date under long-day and short-day conditions, whereas loss of OsWDR5a function resulted in embryo lethality
OsWDR5a|OsWDR5	Os03g0725400	LOC_Os03g51550	heading date	The COMPASS-like complex promotes flowering and panicle branching in rice.	OsWDR5a binds to Early heading date 1 (Ehd1) to regulate its H3K4me3 and expression levels
OsWee1	Os02g0632100	LOC_Os02g42110	seedlings	Cloning, transformation and expression of cell cycle-associated protein kinase OsWee1 in indica rice (Oryza sativa L.).	Seven-day-old rice seedlings were prepared for transformation of OsWee1 gene using Agrobacterium-mediated transformation method
OsWee1	Os02g0632100	LOC_Os02g42110	cell cycle	Cloning, transformation and expression of cell cycle-associated protein kinase OsWee1 in indica rice (Oryza sativa L.).	Cloning, transformation and expression of cell cycle-associated protein kinase OsWee1 in indica rice (Oryza sativa L.).
OsWee1	Os02g0632100	LOC_Os02g42110	Kinase	Cloning, transformation and expression of cell cycle-associated protein kinase OsWee1 in indica rice (Oryza sativa L.).	Cloning, transformation and expression of cell cycle-associated protein kinase OsWee1 in indica rice (Oryza sativa L.).
OsWee1	Os02g0632100	LOC_Os02g42110	protein kinase	Cloning, transformation and expression of cell cycle-associated protein kinase OsWee1 in indica rice (Oryza sativa L.).	Cloning, transformation and expression of cell cycle-associated protein kinase OsWee1 in indica rice (Oryza sativa L.).
OsWee1	Os02g0632100	LOC_Os02g42110	kinase	Cloning, transformation and expression of cell cycle-associated protein kinase OsWee1 in indica rice (Oryza sativa L.).	Cloning, transformation and expression of cell cycle-associated protein kinase OsWee1 in indica rice (Oryza sativa L.).
OsWHY1	Os06g0145800	LOC_Os06g05350	chloroplast	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.
OsWHY1	Os06g0145800	LOC_Os06g05350	chloroplast	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	 What&#x27;s more, OsWHY1 was found to be preferentially expressed in young leaves and was involved in chloroplast RNA editing and splicing
OsWHY1	Os06g0145800	LOC_Os06g05350	chloroplast	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	 Mutation of OsWHY1 significantly affected the expression of chloroplast and ribosome development-related and chlorophyll synthesis-related genes
OsWHY1	Os06g0145800	LOC_Os06g05350	chloroplast	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	 In conclusion, OsWHY1 contributes to early chloroplast development and normal seedling survival in rice
OsWHY1	Os06g0145800	LOC_Os06g05350	development	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.
OsWHY1	Os06g0145800	LOC_Os06g05350	development	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	 In conclusion, OsWHY1 contributes to early chloroplast development and normal seedling survival in rice
OsWHY1	Os06g0145800	LOC_Os06g05350	seedling	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	 In conclusion, OsWHY1 contributes to early chloroplast development and normal seedling survival in rice
OsWHY1	Os06g0145800	LOC_Os06g05350	chloroplast development	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.
OsWHY1	Os06g0145800	LOC_Os06g05350	chloroplast development	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	 In conclusion, OsWHY1 contributes to early chloroplast development and normal seedling survival in rice
OsWHY1	Os06g0145800	LOC_Os06g05350	chlorophyll	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	 Mutation of OsWHY1 significantly affected the expression of chloroplast and ribosome development-related and chlorophyll synthesis-related genes
OsWIH2	Os03g0431100	LOC_Os03g31679	transcription factor	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.
OsWIH2	Os03g0431100	LOC_Os03g31679	transcription factor	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 We further demonstrated that the drought-inducible bHLH transcription factor OsbHLH130 could activate the expression of OsWIH2
OsWIH2	Os03g0431100	LOC_Os03g31679	drought	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.
OsWIH2	Os03g0431100	LOC_Os03g31679	drought	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 In this study, we characterized a novel drought tolerance induced WIH gene in rice, OsWIH2
OsWIH2	Os03g0431100	LOC_Os03g31679	drought	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overexpression of OsWIH2 in rice resulted in significantly higher drought tolerance, probably due to the decreased water loss rate and reactive oxygen species (ROS) accumulation under drought stress
OsWIH2	Os03g0431100	LOC_Os03g31679	drought	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overall, our results suggest that drought stress may induce OsbHLH130 accumulation, which in turn activates OsWIH2 expression, and the latter improves rice drought tolerance by participating in cuticular wax biosynthesis and reducing the water loss rate as well as ROS accumulation
OsWIH2	Os03g0431100	LOC_Os03g31679	tolerance	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.
OsWIH2	Os03g0431100	LOC_Os03g31679	tolerance	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 In this study, we characterized a novel drought tolerance induced WIH gene in rice, OsWIH2
OsWIH2	Os03g0431100	LOC_Os03g31679	tolerance	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overall, our results suggest that drought stress may induce OsbHLH130 accumulation, which in turn activates OsWIH2 expression, and the latter improves rice drought tolerance by participating in cuticular wax biosynthesis and reducing the water loss rate as well as ROS accumulation
OsWIH2	Os03g0431100	LOC_Os03g31679	drought tolerance	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.
OsWIH2	Os03g0431100	LOC_Os03g31679	drought tolerance	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 In this study, we characterized a novel drought tolerance induced WIH gene in rice, OsWIH2
OsWIH2	Os03g0431100	LOC_Os03g31679	drought tolerance	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overexpression of OsWIH2 in rice resulted in significantly higher drought tolerance, probably due to the decreased water loss rate and reactive oxygen species (ROS) accumulation under drought stress
OsWIH2	Os03g0431100	LOC_Os03g31679	drought tolerance	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overall, our results suggest that drought stress may induce OsbHLH130 accumulation, which in turn activates OsWIH2 expression, and the latter improves rice drought tolerance by participating in cuticular wax biosynthesis and reducing the water loss rate as well as ROS accumulation
OsWIH2	Os03g0431100	LOC_Os03g31679	stress	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overexpression of OsWIH2 in rice resulted in significantly higher drought tolerance, probably due to the decreased water loss rate and reactive oxygen species (ROS) accumulation under drought stress
OsWIH2	Os03g0431100	LOC_Os03g31679	stress	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overall, our results suggest that drought stress may induce OsbHLH130 accumulation, which in turn activates OsWIH2 expression, and the latter improves rice drought tolerance by participating in cuticular wax biosynthesis and reducing the water loss rate as well as ROS accumulation
OsWIH2	Os03g0431100	LOC_Os03g31679	drought stress	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overexpression of OsWIH2 in rice resulted in significantly higher drought tolerance, probably due to the decreased water loss rate and reactive oxygen species (ROS) accumulation under drought stress
OsWIH2	Os03g0431100	LOC_Os03g31679	drought stress	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overall, our results suggest that drought stress may induce OsbHLH130 accumulation, which in turn activates OsWIH2 expression, and the latter improves rice drought tolerance by participating in cuticular wax biosynthesis and reducing the water loss rate as well as ROS accumulation
OsWIH2	Os03g0431100	LOC_Os03g31679	reactive oxygen species	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overexpression of OsWIH2 in rice resulted in significantly higher drought tolerance, probably due to the decreased water loss rate and reactive oxygen species (ROS) accumulation under drought stress
OsWIH2	Os03g0431100	LOC_Os03g31679	water loss	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overexpression of OsWIH2 in rice resulted in significantly higher drought tolerance, probably due to the decreased water loss rate and reactive oxygen species (ROS) accumulation under drought stress
OsWIH2	Os03g0431100	LOC_Os03g31679	water loss	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overall, our results suggest that drought stress may induce OsbHLH130 accumulation, which in turn activates OsWIH2 expression, and the latter improves rice drought tolerance by participating in cuticular wax biosynthesis and reducing the water loss rate as well as ROS accumulation
OsWIH2	Os03g0431100	LOC_Os03g31679	cuticular wax biosynthesis	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overall, our results suggest that drought stress may induce OsbHLH130 accumulation, which in turn activates OsWIH2 expression, and the latter improves rice drought tolerance by participating in cuticular wax biosynthesis and reducing the water loss rate as well as ROS accumulation
OsWIH2	Os03g0431100	LOC_Os03g31679	wax biosynthesis	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	 Overall, our results suggest that drought stress may induce OsbHLH130 accumulation, which in turn activates OsWIH2 expression, and the latter improves rice drought tolerance by participating in cuticular wax biosynthesis and reducing the water loss rate as well as ROS accumulation
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	defense response	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	Altogether, OsBWMK1 may mediate SA-dependent defense responses by activating the WRKY transcription factor in plants
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	defense response	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	sa	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	Furthermore, the levels of SA and H(2)O(2) are elevated in 35S-OsBWMK1 transgenic plants that show HR-like cell death
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	defense	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	Altogether, OsBWMK1 may mediate SA-dependent defense responses by activating the WRKY transcription factor in plants
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	defense	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	defense	Alternative splicing of the OsBWMK1 gene generates three transcript variants showing differential subcellular localizations	Moreover, treatment with defense signaling related molecules, such as H(2)O(2) and SA, induced translocation of OsBWMK1 isoforms from the cytoplasm to the nucleus
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	transcription factor	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	In a previous study, we demonstrated that OsBWMK1, which localizes in the nucleus, mediates PR gene expression by activating the OsEREBP1 transcription factor, and that the constitutive expression of OsBWMK1 also enhances resistance against pathogen infections [Y
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	transcription factor	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	Altogether, OsBWMK1 may mediate SA-dependent defense responses by activating the WRKY transcription factor in plants
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	transcription factor	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	defense	Identification and characterization of alternative promoters of the rice MAP kinase gene OsBWMK1	Furthermore, the expression of pOsBWMK1S::GUS was upregulated in response to hydrogen peroxide, a plant defense signaling molecule, in both plant species
OsWJUMK1|OsMPK12|OsBWMK1	Os06g0708000	LOC_Os06g49430	cell death	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	Furthermore, the levels of SA and H(2)O(2) are elevated in 35S-OsBWMK1 transgenic plants that show HR-like cell death
OsWNK9	Os12g0162100	LOC_Os12g06490	drought	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.
OsWNK9	Os12g0162100	LOC_Os12g06490	drought	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	The transcript analysis revealed that OsWNK9 was strongly down regulated under salinity, drought and ABA stress in shoots
OsWNK9	Os12g0162100	LOC_Os12g06490	drought	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	The results indicated that OsWNK9 may regulate salt and drought response in ABA dependent manner
OsWNK9	Os12g0162100	LOC_Os12g06490	salt	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.
OsWNK9	Os12g0162100	LOC_Os12g06490	salt	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	The results indicated that OsWNK9 may regulate salt and drought response in ABA dependent manner
OsWNK9	Os12g0162100	LOC_Os12g06490	tolerance	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.
OsWNK9	Os12g0162100	LOC_Os12g06490	tolerance	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Constitutive expression of OsWNK9 in Arabidopsis thaliana imparted increased tolerance to salt, drought, and ABA stress
OsWNK9	Os12g0162100	LOC_Os12g06490	ABA	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	The transcript analysis revealed that OsWNK9 was strongly down regulated under salinity, drought and ABA stress in shoots
OsWNK9	Os12g0162100	LOC_Os12g06490	ABA	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Constitutive expression of OsWNK9 in Arabidopsis thaliana imparted increased tolerance to salt, drought, and ABA stress
OsWNK9	Os12g0162100	LOC_Os12g06490	ABA	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	The results indicated that OsWNK9 may regulate salt and drought response in ABA dependent manner
OsWNK9	Os12g0162100	LOC_Os12g06490	stress	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	The transcript analysis revealed that OsWNK9 was strongly down regulated under salinity, drought and ABA stress in shoots
OsWNK9	Os12g0162100	LOC_Os12g06490	stress	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Constitutive expression of OsWNK9 in Arabidopsis thaliana imparted increased tolerance to salt, drought, and ABA stress
OsWNK9	Os12g0162100	LOC_Os12g06490	nucleus	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Subcellular localization studies of OsWNK9 showed their presence in the nucleus
OsWNK9	Os12g0162100	LOC_Os12g06490	ABA	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	The transcript analysis revealed that OsWNK9 was strongly down regulated under salinity, drought and ABA stress in shoots
OsWNK9	Os12g0162100	LOC_Os12g06490	ABA	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Constitutive expression of OsWNK9 in Arabidopsis thaliana imparted increased tolerance to salt, drought, and ABA stress
OsWNK9	Os12g0162100	LOC_Os12g06490	ABA	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	The results indicated that OsWNK9 may regulate salt and drought response in ABA dependent manner
OsWNK9	Os12g0162100	LOC_Os12g06490	drought stress	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.
OsWNK9	Os12g0162100	LOC_Os12g06490	transcription factor	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Co-expression analysis of OsWNK9 in phosphate deficiency and arsenate stress condition predicted various proteins including membrane transporter and transcription factors
OsWNK9	Os12g0162100	LOC_Os12g06490	oxidative stress	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Protein-protein interaction analysis of OsWNK9 predicted interaction partners with protein kinase and oxidative stress-responsive protein
OsWNK9	Os12g0162100	LOC_Os12g06490	tolerance	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants
OsWNK9	Os12g0162100	LOC_Os12g06490	tolerance	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Taken together, our results, for the first time, provide evidence that OsWNK9 could positively mediate arsenite stress tolerance in plants
OsWNK9	Os12g0162100	LOC_Os12g06490	oxidative	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Protein-protein interaction analysis of OsWNK9 predicted interaction partners with protein kinase and oxidative stress-responsive protein
OsWNK9	Os12g0162100	LOC_Os12g06490	stress	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	In the present study, we have characterized Arabidopsis overexpressed lines of OsWNK9 regulated by the constitutive promoter under arsenite stress
OsWNK9	Os12g0162100	LOC_Os12g06490	stress	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Moreover, we have performed In silico expression analysis of OsWNK9 under nutrient deficiency and heavy metal stress
OsWNK9	Os12g0162100	LOC_Os12g06490	stress	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Co-expression analysis of OsWNK9 in phosphate deficiency and arsenate stress condition predicted various proteins including membrane transporter and transcription factors
OsWNK9	Os12g0162100	LOC_Os12g06490	stress	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Taken together, our results, for the first time, provide evidence that OsWNK9 could positively mediate arsenite stress tolerance in plants
OsWNK9	Os12g0162100	LOC_Os12g06490	transporter	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Co-expression analysis of OsWNK9 in phosphate deficiency and arsenate stress condition predicted various proteins including membrane transporter and transcription factors
OsWNK9	Os12g0162100	LOC_Os12g06490	Kinase	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Protein-protein interaction analysis of OsWNK9 predicted interaction partners with protein kinase and oxidative stress-responsive protein
OsWNK9	Os12g0162100	LOC_Os12g06490	protein kinase	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Protein-protein interaction analysis of OsWNK9 predicted interaction partners with protein kinase and oxidative stress-responsive protein
OsWNK9	Os12g0162100	LOC_Os12g06490	kinase	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Protein-protein interaction analysis of OsWNK9 predicted interaction partners with protein kinase and oxidative stress-responsive protein
OsWNK9	Os12g0162100	LOC_Os12g06490	stress tolerance	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Taken together, our results, for the first time, provide evidence that OsWNK9 could positively mediate arsenite stress tolerance in plants
OsWNK9	Os12g0162100	LOC_Os12g06490	phosphate	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Co-expression analysis of OsWNK9 in phosphate deficiency and arsenate stress condition predicted various proteins including membrane transporter and transcription factors
OsWNK9	Os12g0162100	LOC_Os12g06490	arsenite	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants
OsWNK9	Os12g0162100	LOC_Os12g06490	arsenite	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	In the present study, we have characterized Arabidopsis overexpressed lines of OsWNK9 regulated by the constitutive promoter under arsenite stress
OsWNK9	Os12g0162100	LOC_Os12g06490	arsenite	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants	Taken together, our results, for the first time, provide evidence that OsWNK9 could positively mediate arsenite stress tolerance in plants
OsWOX13	Os01g0818400	LOC_Os01g60270	resistance	A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.	Overexpression of OsWOX13 (OsWOX13-ov) in rice under the rab21 promoter resulted in drought resistance and early flowering by 7-10 days
OsWOX13	Os01g0818400	LOC_Os01g60270	drought	A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.	Overexpression of OsWOX13 (OsWOX13-ov) in rice under the rab21 promoter resulted in drought resistance and early flowering by 7-10 days
OsWOX13	Os01g0818400	LOC_Os01g60270	drought	A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.	These results suggest that OsWOX13 mediates the stress response and early flowering and, thus, may be a regulator of genes involved in drought escape
OsWOX13	Os01g0818400	LOC_Os01g60270	vegetative	A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.	OsWOX13<U+00A0>was regulated spatially in vegetative organs but temporally in flowers and seeds
OsWOX13	Os01g0818400	LOC_Os01g60270	stress	A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.	These results suggest that OsWOX13 mediates the stress response and early flowering and, thus, may be a regulator of genes involved in drought escape
OsWOX13	Os01g0818400	LOC_Os01g60270	drought resistance	A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.	Overexpression of OsWOX13 (OsWOX13-ov) in rice under the rab21 promoter resulted in drought resistance and early flowering by 7-10 days
OsWOX13	Os01g0818400	LOC_Os01g60270	stress response	A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.	These results suggest that OsWOX13 mediates the stress response and early flowering and, thus, may be a regulator of genes involved in drought escape
OsWOX4	Os04g0649400	LOC_Os04g55590	leaf	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Inducible downregulation of OsWOX4 resulted in severe defects in leaf development, such as an arrest of vascular differentiation, a partial defect in the early cell proliferation required for midrib formation, and a failure to maintain cellular activity in general parenchyma cells
OsWOX4	Os04g0649400	LOC_Os04g55590	leaf	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Transcriptome analysis further showed that OsWOX4 regulates multiple genes, including those responsible for cell cycle progression and hormone action, consistent with the effects of OsWOX4 downregulation on leaf phenotypes
OsWOX4	Os04g0649400	LOC_Os04g55590	leaf	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Collectively, these results suggest that OsWOX4 acts as a key regulator at an early stage of leaf development
OsWOX4	Os04g0649400	LOC_Os04g55590	vascular bundle	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	In situ analysis showed that knockdown of OsWOX4 reduced the expression of two LONELY GUY genes, which function in the synthesis of active cytokinin, in developing vascular bundles
OsWOX4	Os04g0649400	LOC_Os04g55590	stem	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Our previous work revealed that OsWOX4 is involved in the maintenance of shoot apical meristem in rice, whereas AtWOX4 is specifically associated with the maintenance of vascular stem cells in Arabidopsis
OsWOX4	Os04g0649400	LOC_Os04g55590	leaf development	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Inducible downregulation of OsWOX4 resulted in severe defects in leaf development, such as an arrest of vascular differentiation, a partial defect in the early cell proliferation required for midrib formation, and a failure to maintain cellular activity in general parenchyma cells
OsWOX4	Os04g0649400	LOC_Os04g55590	leaf development	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Collectively, these results suggest that OsWOX4 acts as a key regulator at an early stage of leaf development
OsWOX4	Os04g0649400	LOC_Os04g55590	shoot	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Our previous work revealed that OsWOX4 is involved in the maintenance of shoot apical meristem in rice, whereas AtWOX4 is specifically associated with the maintenance of vascular stem cells in Arabidopsis
OsWOX4	Os04g0649400	LOC_Os04g55590	development	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Collectively, these results suggest that OsWOX4 acts as a key regulator at an early stage of leaf development
OsWOX4	Os04g0649400	LOC_Os04g55590	cytokinin	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Consistent with this, cytokinin levels were downregulated by OsWOX4 knockdown
OsWOX4	Os04g0649400	LOC_Os04g55590	meristem	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Our previous work revealed that OsWOX4 is involved in the maintenance of shoot apical meristem in rice, whereas AtWOX4 is specifically associated with the maintenance of vascular stem cells in Arabidopsis
OsWOX4	Os04g0649400	LOC_Os04g55590	cell cycle	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Transcriptome analysis further showed that OsWOX4 regulates multiple genes, including those responsible for cell cycle progression and hormone action, consistent with the effects of OsWOX4 downregulation on leaf phenotypes
OsWOX4	Os04g0649400	LOC_Os04g55590	cell proliferation	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Inducible downregulation of OsWOX4 resulted in severe defects in leaf development, such as an arrest of vascular differentiation, a partial defect in the early cell proliferation required for midrib formation, and a failure to maintain cellular activity in general parenchyma cells
OsWOX4	Os04g0649400	LOC_Os04g55590	shoot apical meristem	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	Our previous work revealed that OsWOX4 is involved in the maintenance of shoot apical meristem in rice, whereas AtWOX4 is specifically associated with the maintenance of vascular stem cells in Arabidopsis
OsWOX4	Os04g0649400	LOC_Os04g55590	transcription factor	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice
OsWOX4	Os04g0649400	LOC_Os04g55590	root	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice
OsWOX4	Os04g0649400	LOC_Os04g55590	root	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Silencing of OsWOX4 by RNA interference (RNAi) greatly increased the primary root length, whereas its overexpression reduced primary root elongation significantly
OsWOX4	Os04g0649400	LOC_Os04g55590	root	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Collectively, our results indicated that OsWOX4 played a crucial role in the primary root elongation by regulating auxin transport, suggesting its importance in rice root system architecture
OsWOX4	Os04g0649400	LOC_Os04g55590	auxin	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The expression of genes responsible for auxin biosynthesis and transport was also changed in OsWOX4 transgenic lines
OsWOX4	Os04g0649400	LOC_Os04g55590	auxin	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Collectively, our results indicated that OsWOX4 played a crucial role in the primary root elongation by regulating auxin transport, suggesting its importance in rice root system architecture
OsWOX4	Os04g0649400	LOC_Os04g55590	root elongation	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice
OsWOX4	Os04g0649400	LOC_Os04g55590	root elongation	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Silencing of OsWOX4 by RNA interference (RNAi) greatly increased the primary root length, whereas its overexpression reduced primary root elongation significantly
OsWOX4	Os04g0649400	LOC_Os04g55590	root elongation	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Collectively, our results indicated that OsWOX4 played a crucial role in the primary root elongation by regulating auxin transport, suggesting its importance in rice root system architecture
OsWOX4	Os04g0649400	LOC_Os04g55590	architecture	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Collectively, our results indicated that OsWOX4 played a crucial role in the primary root elongation by regulating auxin transport, suggesting its importance in rice root system architecture
OsWOX4	Os04g0649400	LOC_Os04g55590	iaa	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Further analysis showed that the accumulation of free IAA was slightly increased in RNAi roots, but drastically reduced in plants overexpressing OsWOX4
OsWOX4	Os04g0649400	LOC_Os04g55590	auxin transport	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Collectively, our results indicated that OsWOX4 played a crucial role in the primary root elongation by regulating auxin transport, suggesting its importance in rice root system architecture
OsWOX4	Os04g0649400	LOC_Os04g55590	primary root	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice
OsWOX4	Os04g0649400	LOC_Os04g55590	primary root	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Silencing of OsWOX4 by RNA interference (RNAi) greatly increased the primary root length, whereas its overexpression reduced primary root elongation significantly
OsWOX4	Os04g0649400	LOC_Os04g55590	primary root	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Collectively, our results indicated that OsWOX4 played a crucial role in the primary root elongation by regulating auxin transport, suggesting its importance in rice root system architecture
OsWOX4	Os04g0649400	LOC_Os04g55590	IAA	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Further analysis showed that the accumulation of free IAA was slightly increased in RNAi roots, but drastically reduced in plants overexpressing OsWOX4
OsWOX4	Os04g0649400	LOC_Os04g55590	auxin biosynthesis	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	The expression of genes responsible for auxin biosynthesis and transport was also changed in OsWOX4 transgenic lines
OsWOX4	Os04g0649400	LOC_Os04g55590	root length	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Silencing of OsWOX4 by RNA interference (RNAi) greatly increased the primary root length, whereas its overexpression reduced primary root elongation significantly
OsWOX4	Os04g0649400	LOC_Os04g55590	root system architecture	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice	Collectively, our results indicated that OsWOX4 played a crucial role in the primary root elongation by regulating auxin transport, suggesting its importance in rice root system architecture
OsWR1	Os02g0202000	LOC_Os02g10760	ethylene	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice
OsWR1	Os02g0202000	LOC_Os02g10760	oxidative	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	In addition, OsWR1 activated the expression of the genes-related to oxidative stress response and membrane stability
OsWR1	Os02g0202000	LOC_Os02g10760	drought tolerance	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	Functional analyses indicated that overexpressing OsWR1 (Ox-WR1) improved while RNA interference OsWR1 rice (RI-WR1) decreased drought tolerance, consistent with water loss and cuticular permeability, suggesting that OsWR1-triggered drought response might be associated with cuticular characteristics
OsWR1	Os02g0202000	LOC_Os02g10760	drought tolerance	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	Thus our results indicate that OsWR1 is a positive regulator of wax synthesis related genes in rice, and this regulation, distinct from its homology regulator of WIN1/SHN1 in cutin synthesis, subsequently contributes to reduced water loss and enhanced drought tolerance
OsWR1	Os02g0202000	LOC_Os02g10760	drought	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	Transcript analysis showed that OsWR1 is induced by drought, abscisic acid and salt, and is predominantly expressed in leaves
OsWR1	Os02g0202000	LOC_Os02g10760	drought	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	Functional analyses indicated that overexpressing OsWR1 (Ox-WR1) improved while RNA interference OsWR1 rice (RI-WR1) decreased drought tolerance, consistent with water loss and cuticular permeability, suggesting that OsWR1-triggered drought response might be associated with cuticular characteristics
OsWR1	Os02g0202000	LOC_Os02g10760	drought	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	Thus our results indicate that OsWR1 is a positive regulator of wax synthesis related genes in rice, and this regulation, distinct from its homology regulator of WIN1/SHN1 in cutin synthesis, subsequently contributes to reduced water loss and enhanced drought tolerance
OsWR1	Os02g0202000	LOC_Os02g10760	drought	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice
OsWR1	Os02g0202000	LOC_Os02g10760	cutin	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	This rice wax synthesis regulatory gene 1 (OsWR1) is a homolog of Arabidopsis wax/cutin synthesis regulatory gene WIN1/SHN1
OsWR1	Os02g0202000	LOC_Os02g10760	cutin	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	Thus our results indicate that OsWR1 is a positive regulator of wax synthesis related genes in rice, and this regulation, distinct from its homology regulator of WIN1/SHN1 in cutin synthesis, subsequently contributes to reduced water loss and enhanced drought tolerance
OsWR1	Os02g0202000	LOC_Os02g10760	salt	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice	Transcript analysis showed that OsWR1 is induced by drought, abscisic acid and salt, and is predominantly expressed in leaves
OsWR2	Os06g0604000	LOC_Os06g40150	drought	OsWR2 recruits HDA704 to regulate the deacetylation of H4K8ac in the promoter of OsABI5 in response to drought stress.	OsWR2 recruits HDA704 to regulate the deacetylation of H4K8ac in the promoter of OsABI5 in response to drought stress.
OsWR2	Os06g0604000	LOC_Os06g40150	drought stress	OsWR2 recruits HDA704 to regulate the deacetylation of H4K8ac in the promoter of OsABI5 in response to drought stress.	OsWR2 recruits HDA704 to regulate the deacetylation of H4K8ac in the promoter of OsABI5 in response to drought stress.
OsWRI1a	Os11g0129700	LOC_Os11g03540	growth	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	 Overexpression of OsWRI1a under the control of the CaMV 35S promoter severely retarded plant growth and development in rice
OsWRI1a	Os11g0129700	LOC_Os11g03540	growth	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	 Thus, ectopic expression of OsWRI1a in rice enhances oil biosynthesis, but also leads to abnormal plant growth and development
OsWRI1a	Os11g0129700	LOC_Os11g03540	development	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	 Overexpression of OsWRI1a under the control of the CaMV 35S promoter severely retarded plant growth and development in rice
OsWRI1a	Os11g0129700	LOC_Os11g03540	development	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	 Thus, ectopic expression of OsWRI1a in rice enhances oil biosynthesis, but also leads to abnormal plant growth and development
OsWRI1a	Os11g0129700	LOC_Os11g03540	plant growth	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	 Overexpression of OsWRI1a under the control of the CaMV 35S promoter severely retarded plant growth and development in rice
OsWRI1a	Os11g0129700	LOC_Os11g03540	plant growth	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	 Thus, ectopic expression of OsWRI1a in rice enhances oil biosynthesis, but also leads to abnormal plant growth and development
OsWRI1a	Os11g0129700	LOC_Os11g03540	endosperm	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	 Expressing the OsWRI1a gene under the control of the P1 promoter of Brittle2 (highly expressed in endosperm but low in leaves and roots) increased the oil content of both leaves and endosperms and upregulated the expression of several genes related to late glycolysis and fatty acid biosynthesis
OsWRI1a	Os11g0129700	LOC_Os11g03540	protoplasts	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	 The subcellular localization of Arabidopsis protoplasts showed that OsWRI1a encoded a nuclear localized protein
OsWRI1a	Os11g0129700	LOC_Os11g03540	fatty acid biosynthesis	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	 Expressing the OsWRI1a gene under the control of the P1 promoter of Brittle2 (highly expressed in endosperm but low in leaves and roots) increased the oil content of both leaves and endosperms and upregulated the expression of several genes related to late glycolysis and fatty acid biosynthesis
OsWRKY10	Os01g0186000	LOC_Os01g09100	resistance	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 Assays of disease in OsWRKY10KD and OsWRKY88KD lines following infection with an incompatible Xoo race, which induced Xa1-mediated resistance in wild-type plants, showed that OsWRKY10 and OsWRKY88 were positive regulators of Xa1-mediated resistance
OsWRKY10	Os01g0186000	LOC_Os01g09100	resistance	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 Two transcriptional regulatory cascades of OsWRKY10 were identified in basal defense and Xa1-mediated resistance
OsWRKY10	Os01g0186000	LOC_Os01g09100	resistance	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 These OsWRKY10 transcriptional regulatory cascades played important roles in basal defense and Xa1-mediated resistance to enable the mounting of a rapid immune response against pathogens
OsWRKY10	Os01g0186000	LOC_Os01g09100	disease	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 Assays of disease in OsWRKY10KD and OsWRKY88KD lines following infection with an incompatible Xoo race, which induced Xa1-mediated resistance in wild-type plants, showed that OsWRKY10 and OsWRKY88 were positive regulators of Xa1-mediated resistance
OsWRKY10	Os01g0186000	LOC_Os01g09100	defense	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 OsWRKY10 also acted as a positive regulator in basal defense by directly or indirectly activating transcription of defense-related genes
OsWRKY10	Os01g0186000	LOC_Os01g09100	defense	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 Two transcriptional regulatory cascades of OsWRKY10 were identified in basal defense and Xa1-mediated resistance
OsWRKY10	Os01g0186000	LOC_Os01g09100	defense	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 These OsWRKY10 transcriptional regulatory cascades played important roles in basal defense and Xa1-mediated resistance to enable the mounting of a rapid immune response against pathogens
OsWRKY10	Os01g0186000	LOC_Os01g09100	immune response	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 These OsWRKY10 transcriptional regulatory cascades played important roles in basal defense and Xa1-mediated resistance to enable the mounting of a rapid immune response against pathogens
OsWRKY10	Os01g0186000	LOC_Os01g09100	 xoo 	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 Assays of disease in OsWRKY10KD and OsWRKY88KD lines following infection with an incompatible Xoo race, which induced Xa1-mediated resistance in wild-type plants, showed that OsWRKY10 and OsWRKY88 were positive regulators of Xa1-mediated resistance
OsWRKY10	Os01g0186000	LOC_Os01g09100	transcriptional regulator	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 Two transcriptional regulatory cascades of OsWRKY10 were identified in basal defense and Xa1-mediated resistance
OsWRKY10	Os01g0186000	LOC_Os01g09100	transcriptional regulator	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 In the first transcriptional regulatory cascade, OsWRKY47 acted downstream of OsWRKY10 whereas OsWRKY51 acted upstream
OsWRKY10	Os01g0186000	LOC_Os01g09100	transcriptional regulator	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance 	 These OsWRKY10 transcriptional regulatory cascades played important roles in basal defense and Xa1-mediated resistance to enable the mounting of a rapid immune response against pathogens
OsWRKY10	Os01g0186000	LOC_Os01g09100	transcription factor	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.
OsWRKY10	Os01g0186000	LOC_Os01g09100	transcription factor	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Here, we functionally characterized a transcription factor in rice (Oryza sativa), OsWRKY10
OsWRKY10	Os01g0186000	LOC_Os01g09100	transporter	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 In accordance with this phenotype, OsWRKY10 was transcriptionally induced by Pi, and a subset of Phosphate Transporter 1 (PHT1) genes were up-regulated upon its mutation, suggesting that OsWRKY10 is a transcriptional repressor in Pi uptake
OsWRKY10	Os01g0186000	LOC_Os01g09100	phosphate	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.
OsWRKY10	Os01g0186000	LOC_Os01g09100	phosphate	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 In accordance with this phenotype, OsWRKY10 was transcriptionally induced by Pi, and a subset of Phosphate Transporter 1 (PHT1) genes were up-regulated upon its mutation, suggesting that OsWRKY10 is a transcriptional repressor in Pi uptake
OsWRKY10	Os01g0186000	LOC_Os01g09100	transcriptional activator	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Moreover, rice plants expressing the OsWRKY10-VP16 fusion protein (a dominant transcriptional activator) accumulated even more Pi than oswrky10
OsWRKY10	Os01g0186000	LOC_Os01g09100	Pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Knockout of OsWRKY10 led to increased Pi uptake and accumulation under Pi-replete condition
OsWRKY10	Os01g0186000	LOC_Os01g09100	Pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 In accordance with this phenotype, OsWRKY10 was transcriptionally induced by Pi, and a subset of Phosphate Transporter 1 (PHT1) genes were up-regulated upon its mutation, suggesting that OsWRKY10 is a transcriptional repressor in Pi uptake
OsWRKY10	Os01g0186000	LOC_Os01g09100	Pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Moreover, rice plants expressing the OsWRKY10-VP16 fusion protein (a dominant transcriptional activator) accumulated even more Pi than oswrky10
OsWRKY10	Os01g0186000	LOC_Os01g09100	Pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Genetic analysis showed that OsPHT1;2 was responsible for the increased Pi accumulation in oswrky10
OsWRKY10	Os01g0186000	LOC_Os01g09100	Pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Furthermore, during Pi starvation, OsWRKY10 protein was degraded through the 26S proteasome
OsWRKY10	Os01g0186000	LOC_Os01g09100	pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Knockout of OsWRKY10 led to increased Pi uptake and accumulation under Pi-replete condition
OsWRKY10	Os01g0186000	LOC_Os01g09100	pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 In accordance with this phenotype, OsWRKY10 was transcriptionally induced by Pi, and a subset of Phosphate Transporter 1 (PHT1) genes were up-regulated upon its mutation, suggesting that OsWRKY10 is a transcriptional repressor in Pi uptake
OsWRKY10	Os01g0186000	LOC_Os01g09100	pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Moreover, rice plants expressing the OsWRKY10-VP16 fusion protein (a dominant transcriptional activator) accumulated even more Pi than oswrky10
OsWRKY10	Os01g0186000	LOC_Os01g09100	pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Genetic analysis showed that OsPHT1;2 was responsible for the increased Pi accumulation in oswrky10
OsWRKY10	Os01g0186000	LOC_Os01g09100	pi	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Furthermore, during Pi starvation, OsWRKY10 protein was degraded through the 26S proteasome
OsWRKY10	Os01g0186000	LOC_Os01g09100	 pi 	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Knockout of OsWRKY10 led to increased Pi uptake and accumulation under Pi-replete condition
OsWRKY10	Os01g0186000	LOC_Os01g09100	 pi 	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 In accordance with this phenotype, OsWRKY10 was transcriptionally induced by Pi, and a subset of Phosphate Transporter 1 (PHT1) genes were up-regulated upon its mutation, suggesting that OsWRKY10 is a transcriptional repressor in Pi uptake
OsWRKY10	Os01g0186000	LOC_Os01g09100	 pi 	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Moreover, rice plants expressing the OsWRKY10-VP16 fusion protein (a dominant transcriptional activator) accumulated even more Pi than oswrky10
OsWRKY10	Os01g0186000	LOC_Os01g09100	 pi 	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Genetic analysis showed that OsPHT1;2 was responsible for the increased Pi accumulation in oswrky10
OsWRKY10	Os01g0186000	LOC_Os01g09100	 pi 	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Furthermore, during Pi starvation, OsWRKY10 protein was degraded through the 26S proteasome
OsWRKY10	Os01g0186000	LOC_Os01g09100	Pi uptake	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 Knockout of OsWRKY10 led to increased Pi uptake and accumulation under Pi-replete condition
OsWRKY10	Os01g0186000	LOC_Os01g09100	Pi uptake	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 In accordance with this phenotype, OsWRKY10 was transcriptionally induced by Pi, and a subset of Phosphate Transporter 1 (PHT1) genes were up-regulated upon its mutation, suggesting that OsWRKY10 is a transcriptional repressor in Pi uptake
OsWRKY10	Os01g0186000	LOC_Os01g09100	phosphate transport	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 In accordance with this phenotype, OsWRKY10 was transcriptionally induced by Pi, and a subset of Phosphate Transporter 1 (PHT1) genes were up-regulated upon its mutation, suggesting that OsWRKY10 is a transcriptional repressor in Pi uptake
OsWRKY10	Os01g0186000	LOC_Os01g09100	transcriptional repressor	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete condition in rice.	 In accordance with this phenotype, OsWRKY10 was transcriptionally induced by Pi, and a subset of Phosphate Transporter 1 (PHT1) genes were up-regulated upon its mutation, suggesting that OsWRKY10 is a transcriptional repressor in Pi uptake
OsWRKY102	Os01g0182700	LOC_Os01g08710	culm	Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice	Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice
OsWRKY102	Os01g0182700	LOC_Os01g08710	lignin	Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice	Both OsWRKY36 and OsWRKY102 mutations significantly increased lignin content by up to 28 % and 32 %, respectively
OsWRKY108	Os01g0821300	LOC_Os01g60600	nucleus	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	OsWRKY21 and OsWRKY108 interact within the nucleus and both bind to the W-box in the OsPHT1;1 promoter
OsWRKY108	Os01g0821300	LOC_Os01g60600	phosphate	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions
OsWRKY108	Os01g0821300	LOC_Os01g60600	Pi	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	Overexpression of OsWRKY21 or OsWRKY108 led to increased Pi accumulation, resulting from elevated expression of OsPHT1;1
OsWRKY108	Os01g0821300	LOC_Os01g60600	Pi	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	By contrast, oswrky21 oswrky108 double mutants showed decreased Pi accumulation and OsPHT1;1 expression in a Pi-dependent manner
OsWRKY108	Os01g0821300	LOC_Os01g60600	pi	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	Overexpression of OsWRKY21 or OsWRKY108 led to increased Pi accumulation, resulting from elevated expression of OsPHT1;1
OsWRKY108	Os01g0821300	LOC_Os01g60600	pi	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	By contrast, oswrky21 oswrky108 double mutants showed decreased Pi accumulation and OsPHT1;1 expression in a Pi-dependent manner
OsWRKY108	Os01g0821300	LOC_Os01g60600	leaf	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.
OsWRKY108	Os01g0821300	LOC_Os01g60600	leaf	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Here, we report that OsWRKY108 acts as a positive regulator of leaf inclination
OsWRKY108	Os01g0821300	LOC_Os01g60600	leaf	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	OsWRKY108 overexpressors showed increased leaf inclination and OsWRKY108-SRDX plants showed an erect-leaf phenotype, irrespective of the Pi regimes
OsWRKY108	Os01g0821300	LOC_Os01g60600	leaf	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Nevertheless, the response of leaf inclination to Pi starvation was largely impaired upon OsWRKY108 overexpression
OsWRKY108	Os01g0821300	LOC_Os01g60600	leaf	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Moreover, in both OsWRKY108-SRDX plants and OsWRKY108 overexpressors, the &#39;percentage of leaf angle alteration relative to wild-type&#39; under Pi-starvation condition was more significant than that under Pi-replete condition
OsWRKY108	Os01g0821300	LOC_Os01g60600	leaf	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	These results suggest that the regulation of OsWRKY108 on leaf inclination is in part dependent on Pi availability
OsWRKY108	Os01g0821300	LOC_Os01g60600	leaf	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Altogether, our findings demonstrate that OsWRKY108 is an integrative regulator of P homeostasis and leaf inclination, serving as a link between plant nutrient signaling and developmental cues
OsWRKY108	Os01g0821300	LOC_Os01g60600	homeostasis	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.
OsWRKY108	Os01g0821300	LOC_Os01g60600	homeostasis	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Altogether, our findings demonstrate that OsWRKY108 is an integrative regulator of P homeostasis and leaf inclination, serving as a link between plant nutrient signaling and developmental cues
OsWRKY108	Os01g0821300	LOC_Os01g60600	transporter	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Overexpression of either OsWRKY108 or OsWRKY21 led to up-regulation of Pi transporter genes and thus enhanced Pi accumulation
OsWRKY108	Os01g0821300	LOC_Os01g60600	Pi	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Overexpression of either OsWRKY108 or OsWRKY21 led to up-regulation of Pi transporter genes and thus enhanced Pi accumulation
OsWRKY108	Os01g0821300	LOC_Os01g60600	Pi	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	OsWRKY108 overexpressors showed increased leaf inclination and OsWRKY108-SRDX plants showed an erect-leaf phenotype, irrespective of the Pi regimes
OsWRKY108	Os01g0821300	LOC_Os01g60600	Pi	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Nevertheless, the response of leaf inclination to Pi starvation was largely impaired upon OsWRKY108 overexpression
OsWRKY108	Os01g0821300	LOC_Os01g60600	Pi	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	These results suggest that the regulation of OsWRKY108 on leaf inclination is in part dependent on Pi availability
OsWRKY108	Os01g0821300	LOC_Os01g60600	phosphorus	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.
OsWRKY108	Os01g0821300	LOC_Os01g60600	pi	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Overexpression of either OsWRKY108 or OsWRKY21 led to up-regulation of Pi transporter genes and thus enhanced Pi accumulation
OsWRKY108	Os01g0821300	LOC_Os01g60600	pi	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	OsWRKY108 overexpressors showed increased leaf inclination and OsWRKY108-SRDX plants showed an erect-leaf phenotype, irrespective of the Pi regimes
OsWRKY108	Os01g0821300	LOC_Os01g60600	pi	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Nevertheless, the response of leaf inclination to Pi starvation was largely impaired upon OsWRKY108 overexpression
OsWRKY108	Os01g0821300	LOC_Os01g60600	pi	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	These results suggest that the regulation of OsWRKY108 on leaf inclination is in part dependent on Pi availability
OsWRKY108	Os01g0821300	LOC_Os01g60600	leaf angle	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Moreover, in both OsWRKY108-SRDX plants and OsWRKY108 overexpressors, the &#39;percentage of leaf angle alteration relative to wild-type&#39; under Pi-starvation condition was more significant than that under Pi-replete condition
OsWRKY11	Os01g0626400	LOC_Os01g43650	seedling	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter	An OsWRKY11 gene, which encodes a transcription factor with the WRKY domain, was identified as one of the genes that was induced by both heat shock and drought stresses in seedlings of rice (Oryza sativa L
OsWRKY11	Os01g0626400	LOC_Os01g43650	seedling	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter
OsWRKY11	Os01g0626400	LOC_Os01g43650	drought tolerance	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter	To determine if overexpression of OsWRKY11 confers heat and drought tolerance, OsWRKY11 cDNA was fused to the promoter of HSP101 of rice and introduced into a rice cultivar Sasanishiki
OsWRKY11	Os01g0626400	LOC_Os01g43650	drought tolerance	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter
OsWRKY11	Os01g0626400	LOC_Os01g43650	drought	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter	An OsWRKY11 gene, which encodes a transcription factor with the WRKY domain, was identified as one of the genes that was induced by both heat shock and drought stresses in seedlings of rice (Oryza sativa L
OsWRKY11	Os01g0626400	LOC_Os01g43650	drought	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter	To determine if overexpression of OsWRKY11 confers heat and drought tolerance, OsWRKY11 cDNA was fused to the promoter of HSP101 of rice and introduced into a rice cultivar Sasanishiki
OsWRKY11	Os01g0626400	LOC_Os01g43650	drought	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter	Our results indicate that the OsWRKY11 gene plays a role in heat and drought stress response and tolerance, and might be useful for improvement of stress tolerance
OsWRKY11	Os01g0626400	LOC_Os01g43650	drought	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter
OsWRKY11	Os01g0626400	LOC_Os01g43650	transcription factor	Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter	An OsWRKY11 gene, which encodes a transcription factor with the WRKY domain, was identified as one of the genes that was induced by both heat shock and drought stresses in seedlings of rice (Oryza sativa L
OsWRKY11	Os01g0626400	LOC_Os01g43650	resistance	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	Ectopic expression of OsWRKY11 resulted in enhanced resistance to a bacterial pathogen, Xanthomonas oryzae pv
OsWRKY11	Os01g0626400	LOC_Os01g43650	resistance	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	oryzae; resistance was compromised in transgenic lines under-expressing OsWRKY11
OsWRKY11	Os01g0626400	LOC_Os01g43650	defense	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	Ectopic expression of OsWRKY11 resulted in constitutive expression of defense-associated genes, whereas knock-down (kd) of OsWRKY11 reduced expression of defense-associated genes during pathogen attack, suggesting that OsWRKY11 activates defense responses
OsWRKY11	Os01g0626400	LOC_Os01g43650	drought	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	In addition, ectopic expression of OsWRKY11 enhanced tolerance to drought stress and induced constitutive expression of drought-responsive genes
OsWRKY11	Os01g0626400	LOC_Os01g43650	tolerance	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	In addition, ectopic expression of OsWRKY11 enhanced tolerance to drought stress and induced constitutive expression of drought-responsive genes
OsWRKY11	Os01g0626400	LOC_Os01g43650	abiotic stress	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	OsWRKY11 is induced by pathogens, drought, and heat, suggesting a function in biotic and abiotic stress responses
OsWRKY11	Os01g0626400	LOC_Os01g43650	abiotic stress	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	OsWRKY11 integrates plant responses to pathogens and abiotic stresses by positively modulating the expression of biotic and abiotic stress-related genes
OsWRKY11	Os01g0626400	LOC_Os01g43650	defense response	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	Ectopic expression of OsWRKY11 resulted in constitutive expression of defense-associated genes, whereas knock-down (kd) of OsWRKY11 reduced expression of defense-associated genes during pathogen attack, suggesting that OsWRKY11 activates defense responses
OsWRKY11	Os01g0626400	LOC_Os01g43650	stress	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	OsWRKY11 is induced by pathogens, drought, and heat, suggesting a function in biotic and abiotic stress responses
OsWRKY11	Os01g0626400	LOC_Os01g43650	stress	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	In addition, ectopic expression of OsWRKY11 enhanced tolerance to drought stress and induced constitutive expression of drought-responsive genes
OsWRKY11	Os01g0626400	LOC_Os01g43650	biotic stress	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	OsWRKY11 is induced by pathogens, drought, and heat, suggesting a function in biotic and abiotic stress responses
OsWRKY11	Os01g0626400	LOC_Os01g43650	biotic stress	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	OsWRKY11 integrates plant responses to pathogens and abiotic stresses by positively modulating the expression of biotic and abiotic stress-related genes
OsWRKY11	Os01g0626400	LOC_Os01g43650	drought stress	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	In addition, ectopic expression of OsWRKY11 enhanced tolerance to drought stress and induced constitutive expression of drought-responsive genes
OsWRKY11	Os01g0626400	LOC_Os01g43650	pathogen	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	Ectopic expression of OsWRKY11 resulted in constitutive expression of defense-associated genes, whereas knock-down (kd) of OsWRKY11 reduced expression of defense-associated genes during pathogen attack, suggesting that OsWRKY11 activates defense responses
OsWRKY11	Os01g0626400	LOC_Os01g43650	drought stress	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	In addition, ectopic expression of OsWRKY11 enhanced tolerance to drought stress and induced constitutive expression of drought-responsive genes
OsWRKY11	Os01g0626400	LOC_Os01g43650	stress response	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	OsWRKY11 is induced by pathogens, drought, and heat, suggesting a function in biotic and abiotic stress responses
OsWRKY114	Os12g0116100	None	resistance	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 When OsWRKY114 is overexpressed in transgenic plants they show enhanced disease resistance against Xoo compared with wild types
OsWRKY114	Os12g0116100	None	disease	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 When OsWRKY114 is overexpressed in transgenic plants they show enhanced disease resistance against Xoo compared with wild types
OsWRKY114	Os12g0116100	None	disease resistance	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 When OsWRKY114 is overexpressed in transgenic plants they show enhanced disease resistance against Xoo compared with wild types
OsWRKY114	Os12g0116100	None	defense	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 These results suggest that OsWRKY114 enhances the innate immunity of Asian rice against Xoo through direct activation of defense genes that include OsPR1a and chtinase
OsWRKY114	Os12g0116100	None	immunity	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 These results suggest that OsWRKY114 enhances the innate immunity of Asian rice against Xoo through direct activation of defense genes that include OsPR1a and chtinase
OsWRKY114	Os12g0116100	None	innate immunity	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 These results suggest that OsWRKY114 enhances the innate immunity of Asian rice against Xoo through direct activation of defense genes that include OsPR1a and chtinase
OsWRKY114	Os12g0116100	None	nucleus	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 OsWRKY114 has transcriptional activity in yeast and localizes in the nucleus
OsWRKY114	Os12g0116100	None	 xoo 	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 When OsWRKY114 is overexpressed in transgenic plants they show enhanced disease resistance against Xoo compared with wild types
OsWRKY114	Os12g0116100	None	 xoo 	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 These results suggest that OsWRKY114 enhances the innate immunity of Asian rice against Xoo through direct activation of defense genes that include OsPR1a and chtinase
OsWRKY114	Os12g0116100	None	 xoo 	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae	 This is the first report to functionally characterize OsWRKY114 in Xoo infection
OsWRKY114	Os12g0116100	None	disease	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae.	 When OsWRKY114 is overexpressed in transgenic plants they show enhanced disease and cell-based functional analyses, we showed OsWRKY114 directly associates with the promoters of OsPR1a and Chitinase and increases the promoter activities
OsWRKY114	Os12g0116100	None	defense	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae.	 These results suggest that OsWRKY114 enhances the innate immunity of Asian rice against Xoo through direct activation of defense genes that include OsPR1a and chtinase
OsWRKY114	Os12g0116100	None	immunity	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae.	 These results suggest that OsWRKY114 enhances the innate immunity of Asian rice against Xoo through direct activation of defense genes that include OsPR1a and chtinase
OsWRKY114	Os12g0116100	None	innate immunity	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae.	 These results suggest that OsWRKY114 enhances the innate immunity of Asian rice against Xoo through direct activation of defense genes that include OsPR1a and chtinase
OsWRKY114	Os12g0116100	None	nucleus	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae.	 OsWRKY114 has transcriptional activity in yeast and localizes in the nucleus
OsWRKY114	Os12g0116100	None	 xoo 	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae.	 These results suggest that OsWRKY114 enhances the innate immunity of Asian rice against Xoo through direct activation of defense genes that include OsPR1a and chtinase
OsWRKY114	Os12g0116100	None	 xoo 	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae.	 This is the first report to functionally characterize OsWRKY114 in Xoo infection
OsWRKY114	Os12g0116100	None	transcription factor	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 The WRKY Group III transcription factor OsWRKY114 is a positive regulator of innate immunity against Xanthomonas oryzae pv
OsWRKY114	Os12g0116100	None	drought	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.
OsWRKY114	Os12g0116100	None	drought	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 In this study, we showed that the abundant OsWRKY114 transcripts present in transgenic rice plants are reduced under drought conditions
OsWRKY114	Os12g0116100	None	drought	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 The overexpression of OsWRKY114 significantly increased drought sensitivity in rice, which resulted in a lower survival rate after drought stress
OsWRKY114	Os12g0116100	None	drought	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 Taken together, these results suggest that OsWRKY114 negatively regulates plant tolerance to drought stress via inhibition of stomatal closure, which would otherwise prevent water loss in rice
OsWRKY114	Os12g0116100	None	stress	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 The overexpression of OsWRKY114 significantly increased drought sensitivity in rice, which resulted in a lower survival rate after drought stress
OsWRKY114	Os12g0116100	None	stress	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 Taken together, these results suggest that OsWRKY114 negatively regulates plant tolerance to drought stress via inhibition of stomatal closure, which would otherwise prevent water loss in rice
OsWRKY114	Os12g0116100	None	drought stress	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 The overexpression of OsWRKY114 significantly increased drought sensitivity in rice, which resulted in a lower survival rate after drought stress
OsWRKY114	Os12g0116100	None	drought stress	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 Taken together, these results suggest that OsWRKY114 negatively regulates plant tolerance to drought stress via inhibition of stomatal closure, which would otherwise prevent water loss in rice
OsWRKY114	Os12g0116100	None	drought stress 	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 Taken together, these results suggest that OsWRKY114 negatively regulates plant tolerance to drought stress via inhibition of stomatal closure, which would otherwise prevent water loss in rice
OsWRKY114	Os12g0116100	None	tolerance	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.
OsWRKY114	Os12g0116100	None	tolerance	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 Taken together, these results suggest that OsWRKY114 negatively regulates plant tolerance to drought stress via inhibition of stomatal closure, which would otherwise prevent water loss in rice
OsWRKY114	Os12g0116100	None	drought tolerance	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.
OsWRKY114	Os12g0116100	None	immunity	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 The WRKY Group III transcription factor OsWRKY114 is a positive regulator of innate immunity against Xanthomonas oryzae pv
OsWRKY114	Os12g0116100	None	innate immunity	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 The WRKY Group III transcription factor OsWRKY114 is a positive regulator of innate immunity against Xanthomonas oryzae pv
OsWRKY114	Os12g0116100	None	stomatal	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.
OsWRKY114	Os12g0116100	None	stomatal	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 Taken together, these results suggest that OsWRKY114 negatively regulates plant tolerance to drought stress via inhibition of stomatal closure, which would otherwise prevent water loss in rice
OsWRKY114	Os12g0116100	None	drought sensitivity	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 The overexpression of OsWRKY114 significantly increased drought sensitivity in rice, which resulted in a lower survival rate after drought stress
OsWRKY114	Os12g0116100	None	water loss	OsWRKY114 Negatively Regulates Drought Tolerance by Restricting Stomatal Closure in Rice.	 Taken together, these results suggest that OsWRKY114 negatively regulates plant tolerance to drought stress via inhibition of stomatal closure, which would otherwise prevent water loss in rice
OsWRKY114	Os12g0116100	None	ABA	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 In this study, we revealed that OsWRKY114 is involved in the ABA response during Xoo infection
OsWRKY114	Os12g0116100	None	ABA	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 OsWRKY114 attenuated the negative effect of ABA on salicylic acid-dependent immunity
OsWRKY114	Os12g0116100	None	ABA	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 Furthermore, OsWRKY114 decreased the transcript levels of ABA-associated genes involved in ABA response and biosynthesis
OsWRKY114	Os12g0116100	None	ABA	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 Taken together, our results suggest that OsWRKY114 is a negative regulator of ABA that confers susceptibility to Xoo in rice
OsWRKY114	Os12g0116100	None	salicylic acid	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 OsWRKY114 attenuated the negative effect of ABA on salicylic acid-dependent immunity
OsWRKY114	Os12g0116100	None	immunity	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 OsWRKY114 attenuated the negative effect of ABA on salicylic acid-dependent immunity
OsWRKY114	Os12g0116100	None	xoo	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 In this study, we revealed that OsWRKY114 is involved in the ABA response during Xoo infection
OsWRKY114	Os12g0116100	None	xoo	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 Taken together, our results suggest that OsWRKY114 is a negative regulator of ABA that confers susceptibility to Xoo in rice
OsWRKY114	Os12g0116100	None	 ABA 	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 In this study, we revealed that OsWRKY114 is involved in the ABA response during Xoo infection
OsWRKY114	Os12g0116100	None	 ABA 	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 OsWRKY114 attenuated the negative effect of ABA on salicylic acid-dependent immunity
OsWRKY114	Os12g0116100	None	 ABA 	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 Furthermore, OsWRKY114 decreased the transcript levels of ABA-associated genes involved in ABA response and biosynthesis
OsWRKY114	Os12g0116100	None	 ABA 	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 Taken together, our results suggest that OsWRKY114 is a negative regulator of ABA that confers susceptibility to Xoo in rice
OsWRKY114	Os12g0116100	None	Xoo	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 In this study, we revealed that OsWRKY114 is involved in the ABA response during Xoo infection
OsWRKY114	Os12g0116100	None	Xoo	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 Taken together, our results suggest that OsWRKY114 is a negative regulator of ABA that confers susceptibility to Xoo in rice
OsWRKY114	Os12g0116100	None	 xoo 	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 In this study, we revealed that OsWRKY114 is involved in the ABA response during Xoo infection
OsWRKY114	Os12g0116100	None	 xoo 	OsWRKY114 Inhibits ABA-Induced Susceptibility to Xanthomonas oryzae pv. oryzae in Rice.	 Taken together, our results suggest that OsWRKY114 is a negative regulator of ABA that confers susceptibility to Xoo in rice
OsWRKY114	Os12g0116100	None	resistance	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 These results indicate that OsWRKY114 confers broad-spectrum resistance not only to Xoo but also to F
OsWRKY114	Os12g0116100	None	disease	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 In this study, we revealed that OsWRKY114 enhances innate immunity in rice against the fungal pathogen Fusarium fujikuroi, which is the causal agent of bakanae disease
OsWRKY114	Os12g0116100	None	defense response	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 However, it is not known whether OsWRKY114 is involved in defense responses to other pathogens
OsWRKY114	Os12g0116100	None	defense	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 However, it is not known whether OsWRKY114 is involved in defense responses to other pathogens
OsWRKY114	Os12g0116100	None	immunity	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.
OsWRKY114	Os12g0116100	None	immunity	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 In this study, we revealed that OsWRKY114 enhances innate immunity in rice against the fungal pathogen Fusarium fujikuroi, which is the causal agent of bakanae disease
OsWRKY114	Os12g0116100	None	innate immunity	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 In this study, we revealed that OsWRKY114 enhances innate immunity in rice against the fungal pathogen Fusarium fujikuroi, which is the causal agent of bakanae disease
OsWRKY114	Os12g0116100	None	pathogen	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 In this study, we revealed that OsWRKY114 enhances innate immunity in rice against the fungal pathogen Fusarium fujikuroi, which is the causal agent of bakanae disease
OsWRKY114	Os12g0116100	None	xoo	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 These results indicate that OsWRKY114 confers broad-spectrum resistance not only to Xoo but also to F
OsWRKY114	Os12g0116100	None	Xoo	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 These results indicate that OsWRKY114 confers broad-spectrum resistance not only to Xoo but also to F
OsWRKY114	Os12g0116100	None	 xoo 	OsWRKY114 Is a Player in Rice Immunity against Fusarium fujikuroi.	 These results indicate that OsWRKY114 confers broad-spectrum resistance not only to Xoo but also to F
OsWRKY115	Os07g0460900	LOC_Os07g27670	transcription factor	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Only the LOC_Os07g27670 expression level encoding the OsWRKY115 transcription factor on the locus was specifically induced by cold stress in the cold-tolerant cultivar
OsWRKY115	Os07g0460900	LOC_Os07g27670	seedlings	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Overexpression and knockout of OsWRKY115 significantly affected cold tolerance in seedlings
OsWRKY115	Os07g0460900	LOC_Os07g27670	tolerance	OsWRKY115 on qCT7 links to cold tolerance in rice.	OsWRKY115 on qCT7 links to cold tolerance in rice.
OsWRKY115	Os07g0460900	LOC_Os07g27670	tolerance	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Moreover, haplotype analysis and the KASP8 marker indicated that OsWRKY115 was significantly associated with cold tolerance
OsWRKY115	Os07g0460900	LOC_Os07g27670	tolerance	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Overexpression and knockout of OsWRKY115 significantly affected cold tolerance in seedlings
OsWRKY115	Os07g0460900	LOC_Os07g27670	cold tolerance	OsWRKY115 on qCT7 links to cold tolerance in rice.	OsWRKY115 on qCT7 links to cold tolerance in rice.
OsWRKY115	Os07g0460900	LOC_Os07g27670	cold tolerance	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Moreover, haplotype analysis and the KASP8 marker indicated that OsWRKY115 was significantly associated with cold tolerance
OsWRKY115	Os07g0460900	LOC_Os07g27670	cold tolerance	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Overexpression and knockout of OsWRKY115 significantly affected cold tolerance in seedlings
OsWRKY115	Os07g0460900	LOC_Os07g27670	cold stress	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Only the LOC_Os07g27670 expression level encoding the OsWRKY115 transcription factor on the locus was specifically induced by cold stress in the cold-tolerant cultivar
OsWRKY115	Os07g0460900	LOC_Os07g27670	stress	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Only the LOC_Os07g27670 expression level encoding the OsWRKY115 transcription factor on the locus was specifically induced by cold stress in the cold-tolerant cultivar
OsWRKY115	Os07g0460900	LOC_Os07g27670	cold	OsWRKY115 on qCT7 links to cold tolerance in rice.	OsWRKY115 on qCT7 links to cold tolerance in rice.
OsWRKY115	Os07g0460900	LOC_Os07g27670	cold	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Only the LOC_Os07g27670 expression level encoding the OsWRKY115 transcription factor on the locus was specifically induced by cold stress in the cold-tolerant cultivar
OsWRKY115	Os07g0460900	LOC_Os07g27670	cold	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Moreover, haplotype analysis and the KASP8 marker indicated that OsWRKY115 was significantly associated with cold tolerance
OsWRKY115	Os07g0460900	LOC_Os07g27670	cold	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Overexpression and knockout of OsWRKY115 significantly affected cold tolerance in seedlings
OsWRKY115	Os07g0460900	LOC_Os07g27670	cold	OsWRKY115 on qCT7 links to cold tolerance in rice.	 Our experiments identified OsWRKY115 as a novel regulatory gene associated with cold response in rice, and the Kong-Yu-131 allele with specific cold-induced expression may be an important molecular variant
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	growth	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Furthermore, OsWRKY13 will provide a transgenic tool for engineering wider-spectrum and whole-growth-stage resistance rice in breeding programs
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	transcription factor	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice	At least 39 transcription factor genes were influenced by OsWRKY13, and 30 of them were downregulated
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	transcription factor	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice	The promoters of OsWRKY13-upregulated genes were overrepresented with W-boxes for WRKY protein binding, whereas the promoters of OsWRKY13-downregulated genes were enriched with cis-elements putatively for binding of MYB and AP2/EREBP types of transcription factors
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	transcription factor	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice	CONCLUSION: These results suggest that OsWRKY13-mediated signalling pathways are partitioned by different transcription factors
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance	In this study, we identified cis-acting elements and their binding proteins of rice OsWRKY13, a gene that plays a pivotal role in disease resistance against bacterial and fungal pathogens
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance	These results suggest that OsWRKY13 expression is regulated by multiple factors to achieve disease resistance
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	transcription regulator	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice	BACKGROUND: Rice transcription regulator OsWRKY13 influences the functioning of more than 500 genes in multiple signalling pathways, with roles in disease resistance, redox homeostasis, abiotic stress responses, and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease resistance	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Here, we show that OsWRKY13 plays a pivotal role in rice disease resistance
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease resistance	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice	BACKGROUND: Rice transcription regulator OsWRKY13 influences the functioning of more than 500 genes in multiple signalling pathways, with roles in disease resistance, redox homeostasis, abiotic stress responses, and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Here, we show that OsWRKY13 plays a pivotal role in rice disease resistance
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Overexpression of OsWRKY13 can enhance rice resistance to bacterial blight and fungal blast, two of the most devastating diseases of rice worldwide, at both the seedling and adult stages, and shows no influence on the fertility
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	defense	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	seedling	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Overexpression of OsWRKY13 can enhance rice resistance to bacterial blight and fungal blast, two of the most devastating diseases of rice worldwide, at both the seedling and adult stages, and shows no influence on the fertility
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	blast	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Overexpression of OsWRKY13 can enhance rice resistance to bacterial blight and fungal blast, two of the most devastating diseases of rice worldwide, at both the seedling and adult stages, and shows no influence on the fertility
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	The OsWRKY13-associated disease resistance pathway synergistically interacts via OsWRKY13 with the glutathione/glutaredoxin system and flavonoid biosynthesis pathway to monitor redox homeostasis and to putatively enhance the biosynthesis of antimicrobial flavonoid phytoalexins, respectively, in OsWRKY13-overexpressing lines
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Meanwhile, the OsWRKY13-associated disease resistance pathway appears to interact antagonistically with the SNAC1-mediated abiotic stress defense pathway, jasmonic acid signaling pathway, and terpenoid metabolism pathway via OsWRKY13 to suppress salt and cold defense responses as well as to putatively retard rice growth and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	fungal blast	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Overexpression of OsWRKY13 can enhance rice resistance to bacterial blight and fungal blast, two of the most devastating diseases of rice worldwide, at both the seedling and adult stages, and shows no influence on the fertility
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	homeostasis	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	The OsWRKY13-associated disease resistance pathway synergistically interacts via OsWRKY13 with the glutathione/glutaredoxin system and flavonoid biosynthesis pathway to monitor redox homeostasis and to putatively enhance the biosynthesis of antimicrobial flavonoid phytoalexins, respectively, in OsWRKY13-overexpressing lines
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	growth	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Meanwhile, the OsWRKY13-associated disease resistance pathway appears to interact antagonistically with the SNAC1-mediated abiotic stress defense pathway, jasmonic acid signaling pathway, and terpenoid metabolism pathway via OsWRKY13 to suppress salt and cold defense responses as well as to putatively retard rice growth and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	jasmonate	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease resistance	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice	BACKGROUND: Rice transcription regulator OsWRKY13 influences the functioning of more than 500 genes in multiple signalling pathways, with roles in disease resistance, redox homeostasis, abiotic stress responses, and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease resistance	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	The OsWRKY13-associated disease resistance pathway synergistically interacts via OsWRKY13 with the glutathione/glutaredoxin system and flavonoid biosynthesis pathway to monitor redox homeostasis and to putatively enhance the biosynthesis of antimicrobial flavonoid phytoalexins, respectively, in OsWRKY13-overexpressing lines
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease resistance	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Meanwhile, the OsWRKY13-associated disease resistance pathway appears to interact antagonistically with the SNAC1-mediated abiotic stress defense pathway, jasmonic acid signaling pathway, and terpenoid metabolism pathway via OsWRKY13 to suppress salt and cold defense responses as well as to putatively retard rice growth and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease resistance	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	bacterial blight	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Overexpression of OsWRKY13 can enhance rice resistance to bacterial blight and fungal blast, two of the most devastating diseases of rice worldwide, at both the seedling and adult stages, and shows no influence on the fertility
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	blight	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Overexpression of OsWRKY13 can enhance rice resistance to bacterial blight and fungal blast, two of the most devastating diseases of rice worldwide, at both the seedling and adult stages, and shows no influence on the fertility
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	jasmonic	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Meanwhile, the OsWRKY13-associated disease resistance pathway appears to interact antagonistically with the SNAC1-mediated abiotic stress defense pathway, jasmonic acid signaling pathway, and terpenoid metabolism pathway via OsWRKY13 to suppress salt and cold defense responses as well as to putatively retard rice growth and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	defense response	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Meanwhile, the OsWRKY13-associated disease resistance pathway appears to interact antagonistically with the SNAC1-mediated abiotic stress defense pathway, jasmonic acid signaling pathway, and terpenoid metabolism pathway via OsWRKY13 to suppress salt and cold defense responses as well as to putatively retard rice growth and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	jasmonic acid	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Meanwhile, the OsWRKY13-associated disease resistance pathway appears to interact antagonistically with the SNAC1-mediated abiotic stress defense pathway, jasmonic acid signaling pathway, and terpenoid metabolism pathway via OsWRKY13 to suppress salt and cold defense responses as well as to putatively retard rice growth and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	breeding	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Furthermore, OsWRKY13 will provide a transgenic tool for engineering wider-spectrum and whole-growth-stage resistance rice in breeding programs
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	sa	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	These results suggest that OsWRKY13, as an activator of the SA-dependent pathway and a suppressor of JA-dependent pathways, mediates rice resistance by directly or indirectly regulating the expression of a subset of genes acting both upstream and downstream of SA and JA
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	abiotic stress	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Meanwhile, the OsWRKY13-associated disease resistance pathway appears to interact antagonistically with the SNAC1-mediated abiotic stress defense pathway, jasmonic acid signaling pathway, and terpenoid metabolism pathway via OsWRKY13 to suppress salt and cold defense responses as well as to putatively retard rice growth and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease resistance	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance	In this study, we identified cis-acting elements and their binding proteins of rice OsWRKY13, a gene that plays a pivotal role in disease resistance against bacterial and fungal pathogens
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease resistance	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance	These results suggest that OsWRKY13 expression is regulated by multiple factors to achieve disease resistance
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease resistance	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	homeostasis	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice	BACKGROUND: Rice transcription regulator OsWRKY13 influences the functioning of more than 500 genes in multiple signalling pathways, with roles in disease resistance, redox homeostasis, abiotic stress responses, and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	salt	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Meanwhile, the OsWRKY13-associated disease resistance pathway appears to interact antagonistically with the SNAC1-mediated abiotic stress defense pathway, jasmonic acid signaling pathway, and terpenoid metabolism pathway via OsWRKY13 to suppress salt and cold defense responses as well as to putatively retard rice growth and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	abiotic stress	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice	BACKGROUND: Rice transcription regulator OsWRKY13 influences the functioning of more than 500 genes in multiple signalling pathways, with roles in disease resistance, redox homeostasis, abiotic stress responses, and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	fertility	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Overexpression of OsWRKY13 can enhance rice resistance to bacterial blight and fungal blast, two of the most devastating diseases of rice worldwide, at both the seedling and adult stages, and shows no influence on the fertility
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	defense	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Here we report that OsWRKY13, an activator of rice resistance to both bacterial and fungal pathogens, appears to function as a convergent point for crosstalk among the pathogen-induced salicylate-dependent defense pathway and five other physiologic pathways
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	defense	Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance	Meanwhile, the OsWRKY13-associated disease resistance pathway appears to interact antagonistically with the SNAC1-mediated abiotic stress defense pathway, jasmonic acid signaling pathway, and terpenoid metabolism pathway via OsWRKY13 to suppress salt and cold defense responses as well as to putatively retard rice growth and development
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	transcriptional activator	The WRKY45-2-WRKY13-WRKY42 Transcriptional Regulatory Cascade Is Required for Rice Resistance to Fungal Pathogen.	WRKY45-2, functioning as a transcriptional activator, directly activated WRKY13
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	resistance	The WRKY45-2-WRKY13-WRKY42 Transcriptional Regulatory Cascade Is Required for Rice Resistance to Fungal Pathogen.	Previous studies have revealed that rice WRKY13 (as a transcriptional repressor) and WRKY45-2 enhance resistance to M
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	leaf	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	To compute and evaluate the possible molecular mechanism for observed resistance correlated to WRKY13 gene expression, rice gene expression profiles against bacterial leaf blight and leaf blast disease from ROAD database were used to prioritize the locus IDs that were used as input in RiceNet v2 tool
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	resistance	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	resistance	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	To compute and evaluate the possible molecular mechanism for observed resistance correlated to WRKY13 gene expression, rice gene expression profiles against bacterial leaf blight and leaf blast disease from ROAD database were used to prioritize the locus IDs that were used as input in RiceNet v2 tool
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	sheath	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	sheath	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	Agrobacterium mediated transformation was carried out in rice plants using overexpression construct of WRKY13 (agroinfection in seeds of varieties susceptible to sheath blight and sheath rot, followed by selection in antibiotic media, germinating and hardening of putative transgenic lines)
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	disease	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	To compute and evaluate the possible molecular mechanism for observed resistance correlated to WRKY13 gene expression, rice gene expression profiles against bacterial leaf blight and leaf blast disease from ROAD database were used to prioritize the locus IDs that were used as input in RiceNet v2 tool
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	blast	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	To compute and evaluate the possible molecular mechanism for observed resistance correlated to WRKY13 gene expression, rice gene expression profiles against bacterial leaf blight and leaf blast disease from ROAD database were used to prioritize the locus IDs that were used as input in RiceNet v2 tool
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	blight	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	To compute and evaluate the possible molecular mechanism for observed resistance correlated to WRKY13 gene expression, rice gene expression profiles against bacterial leaf blight and leaf blast disease from ROAD database were used to prioritize the locus IDs that were used as input in RiceNet v2 tool
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	blight	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	Agrobacterium mediated transformation was carried out in rice plants using overexpression construct of WRKY13 (agroinfection in seeds of varieties susceptible to sheath blight and sheath rot, followed by selection in antibiotic media, germinating and hardening of putative transgenic lines)
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	resistant	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	RT-PCR and qPCR analyses of WRKY13 using RNA extracted from the plant tissues revealed higher WRKY13 expression in resistant varieties (both diseases) upon pathogen challenge compared to uninfected control and also the susceptible varieties
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	pathogen	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	RT-PCR and qPCR analyses of WRKY13 using RNA extracted from the plant tissues revealed higher WRKY13 expression in resistant varieties (both diseases) upon pathogen challenge compared to uninfected control and also the susceptible varieties
OsWRKY13|WRKY13	Os01g0750100	LOC_Os01g54600	blast disease	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	To compute and evaluate the possible molecular mechanism for observed resistance correlated to WRKY13 gene expression, rice gene expression profiles against bacterial leaf blight and leaf blast disease from ROAD database were used to prioritize the locus IDs that were used as input in RiceNet v2 tool
OsWRKY21	Os01g0821600	LOC_Os01g60640	nucleus	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	OsWRKY21 and OsWRKY108 interact within the nucleus and both bind to the W-box in the OsPHT1;1 promoter
OsWRKY21	Os01g0821600	LOC_Os01g60640	phosphate	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions
OsWRKY21	Os01g0821600	LOC_Os01g60640	Pi	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	Overexpression of OsWRKY21 or OsWRKY108 led to increased Pi accumulation, resulting from elevated expression of OsPHT1;1
OsWRKY21	Os01g0821600	LOC_Os01g60640	Pi	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	By contrast, oswrky21 oswrky108 double mutants showed decreased Pi accumulation and OsPHT1;1 expression in a Pi-dependent manner
OsWRKY21	Os01g0821600	LOC_Os01g60640	pi	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	Overexpression of OsWRKY21 or OsWRKY108 led to increased Pi accumulation, resulting from elevated expression of OsPHT1;1
OsWRKY21	Os01g0821600	LOC_Os01g60640	pi	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions	By contrast, oswrky21 oswrky108 double mutants showed decreased Pi accumulation and OsPHT1;1 expression in a Pi-dependent manner
OsWRKY21	Os01g0821600	LOC_Os01g60640	transcription factor	Genome-Wide Association Study in Rice Revealed a Novel Gene in Determining Plant Height and Stem Development, by Encoding a WRKY Transcription Factor	The peak QTN (C/T) was located in the first coding region of a group III WRKY transcription factor OsWRKY21 (LOC_Os01g60640)
OsWRKY21	Os01g0821600	LOC_Os01g60640	height	Genome-Wide Association Study in Rice Revealed a Novel Gene in Determining Plant Height and Stem Development, by Encoding a WRKY Transcription Factor	These data suggest the essential role of OsWRKY21 in regulation of internode elongation and plant height in rice
OsWRKY21	Os01g0821600	LOC_Os01g60640	heading date	Genome-Wide Association Study in Rice Revealed a Novel Gene in Determining Plant Height and Stem Development, by Encoding a WRKY Transcription Factor	Most notably, overexpressing OsWRKY21 resulted in the semi-dwarf phenotype, early heading date and short internodes compared to the wild type, while the knockout mutant plants by CRISPR/Cas9 technology yielded the opposite
OsWRKY21	Os01g0821600	LOC_Os01g60640	plant height	Genome-Wide Association Study in Rice Revealed a Novel Gene in Determining Plant Height and Stem Development, by Encoding a WRKY Transcription Factor	These data suggest the essential role of OsWRKY21 in regulation of internode elongation and plant height in rice
OsWRKY21	Os01g0821600	LOC_Os01g60640	internode elongation	Genome-Wide Association Study in Rice Revealed a Novel Gene in Determining Plant Height and Stem Development, by Encoding a WRKY Transcription Factor	These data suggest the essential role of OsWRKY21 in regulation of internode elongation and plant height in rice
OsWRKY22	Os01g0820400	LOC_Os01g60490	biotic stress	OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast	In contrast, inquiring a subset of biotic stress-related Affymetrix data, a large number of resistance and defence-related genes were found to be putatively co-expressed with OsWRKY22
OsWRKY22	Os01g0820400	LOC_Os01g60490	blast	OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast	oryzae strain, confirming that OsWRKY22 is involved in rice resistance to blast
OsWRKY22	Os01g0820400	LOC_Os01g60490	blast	OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast	OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast
OsWRKY22	Os01g0820400	LOC_Os01g60490	tolerance	Transcription factor WRKY22 promotes aluminum tolerance via activation of OsFRDL4 expression and enhancement of citrate secretion in rice (Oryza sativa).	We conclude that OsWRKY22 promotes Al-induced increases in OsFRDL4 expression, thus enhancing Al-induced citrate secretion and Al tolerance in rice
OsWRKY22	Os01g0820400	LOC_Os01g60490	stress	Transcription factor WRKY22 promotes aluminum tolerance via activation of OsFRDL4 expression and enhancement of citrate secretion in rice (Oryza sativa).	We define the role of OsWRKY22 in response to Al stress in rice by using mutation and transgenic complementation assays, and characterize the regulation of OsFRDL4 by OsWRKY22 via yeas one-hybrid, electrophoretic mobility shift assay and ChIP-quantitative PCR
OsWRKY22	Os01g0820400	LOC_Os01g60490	Al tolerance	Transcription factor WRKY22 promotes aluminum tolerance via activation of OsFRDL4 expression and enhancement of citrate secretion in rice (Oryza sativa).	We conclude that OsWRKY22 promotes Al-induced increases in OsFRDL4 expression, thus enhancing Al-induced citrate secretion and Al tolerance in rice
OsWRKY22	Os01g0820400	LOC_Os01g60490	transcriptional activator	Transcription factor WRKY22 promotes aluminum tolerance via activation of OsFRDL4 expression and enhancement of citrate secretion in rice (Oryza sativa).	We next show that OsWRKY22 is localized in the nucleus, functions as a transcriptional activator and is able to bind to the promoter of OsFRDL4 via W-box elements
OsWRKY23	Os01g0734000	LOC_Os01g53260	salicylic acid	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Under biotic and abiotic stresses treatments, OsWRKY23 was markedly induced by continuous-dark-induced leaf senescence and infection by rice pathogen Pyricularia oryzae Cav as well as salicylic acid (SA)
OsWRKY23	Os01g0734000	LOC_Os01g53260	growth	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Under normal growth conditions, OsWRKY23 expressed exclusively in roots and senescing leaves
OsWRKY23	Os01g0734000	LOC_Os01g53260	root	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Under normal growth conditions, OsWRKY23 expressed exclusively in roots and senescing leaves
OsWRKY23	Os01g0734000	LOC_Os01g53260	defense	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis
OsWRKY23	Os01g0734000	LOC_Os01g53260	leaf	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Under biotic and abiotic stresses treatments, OsWRKY23 was markedly induced by continuous-dark-induced leaf senescence and infection by rice pathogen Pyricularia oryzae Cav as well as salicylic acid (SA)
OsWRKY23	Os01g0734000	LOC_Os01g53260	leaf	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Furthermore, over-expression of OsWRKY23 accelerated leaf senescence in darkness
OsWRKY23	Os01g0734000	LOC_Os01g53260	leaf	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	In conclusion, these results suggest that OsWRKY23 is a novel modulator of pathogen responses as well as dark-induced leaf senescence
OsWRKY23	Os01g0734000	LOC_Os01g53260	leaf	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis
OsWRKY23	Os01g0734000	LOC_Os01g53260	senescence	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Under biotic and abiotic stresses treatments, OsWRKY23 was markedly induced by continuous-dark-induced leaf senescence and infection by rice pathogen Pyricularia oryzae Cav as well as salicylic acid (SA)
OsWRKY23	Os01g0734000	LOC_Os01g53260	senescence	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Furthermore, over-expression of OsWRKY23 accelerated leaf senescence in darkness
OsWRKY23	Os01g0734000	LOC_Os01g53260	senescence	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	In conclusion, these results suggest that OsWRKY23 is a novel modulator of pathogen responses as well as dark-induced leaf senescence
OsWRKY23	Os01g0734000	LOC_Os01g53260	senescence	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis
OsWRKY23	Os01g0734000	LOC_Os01g53260	biotic stress	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Under biotic and abiotic stresses treatments, OsWRKY23 was markedly induced by continuous-dark-induced leaf senescence and infection by rice pathogen Pyricularia oryzae Cav as well as salicylic acid (SA)
OsWRKY23	Os01g0734000	LOC_Os01g53260	abiotic stress	Heterologous expression of OsWRKY23 gene enhances pathogen defense and dark-induced leaf senescence in Arabidopsis	Under biotic and abiotic stresses treatments, OsWRKY23 was markedly induced by continuous-dark-induced leaf senescence and infection by rice pathogen Pyricularia oryzae Cav as well as salicylic acid (SA)
OsWRKY24	Os01g0826400	LOC_Os01g61080	 ga 	A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells	Here we report a rice WRKY gene, OsWRKY24, which encodes a protein that functions as a negative regulator of both GA and ABA signaling
OsWRKY24	Os01g0826400	LOC_Os01g61080	 ga 	A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells	As to the GA signaling, OsWRKY24 differs from OsWRKY51 and -71, two negative regulators specifically function in the GA signaling pathway, in several ways
OsWRKY24	Os01g0826400	LOC_Os01g61080	 ga 	A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells	Third, unlike OsWRKY71, OsWRKY24 is stable upon GA treatment
OsWRKY24	Os01g0826400	LOC_Os01g61080	 ga 	A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells	Together, these data demonstrate that OsWRKY24 is a novel type of transcriptional repressor that inhibits both GA and ABA signaling
OsWRKY24	Os01g0826400	LOC_Os01g61080	 ABA 	A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells	Here we report a rice WRKY gene, OsWRKY24, which encodes a protein that functions as a negative regulator of both GA and ABA signaling
OsWRKY24	Os01g0826400	LOC_Os01g61080	 ABA 	A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells	Together, these data demonstrate that OsWRKY24 is a novel type of transcriptional repressor that inhibits both GA and ABA signaling
OsWRKY24	Os01g0826400	LOC_Os01g61080	 ABA 	Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells	Using a transient expression system, we have demonstrated that OsWRKY24 and -45 repress ABA induction of the HVA22 promoter-beta-glucuronidase construct, while OsWRKY72 and -77 synergistically interact with ABA to activate this reporter construct
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain	Overexpression of OsAP2 and OsWRKY24 in Arabidopsis results in reduction of plant size.	Recently, two rice genes, OsAPETALA2 (OsAP2) and OsWRKY24 have been reported to be positive regulators involved in increased lamina inclination and grain size through cell elongation
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain size	Overexpression of OsAP2 and OsWRKY24 in Arabidopsis results in reduction of plant size.	Recently, two rice genes, OsAPETALA2 (OsAP2) and OsWRKY24 have been reported to be positive regulators involved in increased lamina inclination and grain size through cell elongation
OsWRKY24	Os01g0826400	LOC_Os01g61080	cell elongation	Overexpression of OsAP2 and OsWRKY24 in Arabidopsis results in reduction of plant size.	Recently, two rice genes, OsAPETALA2 (OsAP2) and OsWRKY24 have been reported to be positive regulators involved in increased lamina inclination and grain size through cell elongation
OsWRKY24	Os01g0826400	LOC_Os01g61080	lamina	Overexpression of OsAP2 and OsWRKY24 in Arabidopsis results in reduction of plant size.	Recently, two rice genes, OsAPETALA2 (OsAP2) and OsWRKY24 have been reported to be positive regulators involved in increased lamina inclination and grain size through cell elongation
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	OsWRKY24 functions redundantly with OsWRKY53, while OsWRKY70 functions differently from OsWRKY53 in regulating grain size
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 However, whether the OsWRKY53 homologs OsWRKY24 and OsWRKY70 also contribute to grain size which remains unknown
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Here, we report that grain size in OsWRKY24 overexpression lines and oswrky24 mutants is similar to that of the wild type
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Importantly, a systematic characterization of seed length in the oswrky70 single, the oswrky53 oswrky70 double and the oswrky24 oswrky53 oswrky70 triple mutant indicated that loss of OsWRKY70 also leads to increased seed length, suggesting that OsWRKY70 might play a role distinct from that of OsWRKY53 in regulating grain size
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Taken together, these findings suggest that OsWRKY24 and OsWRKY70 regulate rice grain size redundantly and independently from OsWRKY53
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	OsWRKY24 functions redundantly with OsWRKY53, while OsWRKY70 functions differently from OsWRKY53 in regulating grain size
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 However, whether the OsWRKY53 homologs OsWRKY24 and OsWRKY70 also contribute to grain size which remains unknown
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Here, we report that grain size in OsWRKY24 overexpression lines and oswrky24 mutants is similar to that of the wild type
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Importantly, a systematic characterization of seed length in the oswrky70 single, the oswrky53 oswrky70 double and the oswrky24 oswrky53 oswrky70 triple mutant indicated that loss of OsWRKY70 also leads to increased seed length, suggesting that OsWRKY70 might play a role distinct from that of OsWRKY53 in regulating grain size
OsWRKY24	Os01g0826400	LOC_Os01g61080	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Taken together, these findings suggest that OsWRKY24 and OsWRKY70 regulate rice grain size redundantly and independently from OsWRKY53
OsWRKY24	Os01g0826400	LOC_Os01g61080	seed	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Importantly, a systematic characterization of seed length in the oswrky70 single, the oswrky53 oswrky70 double and the oswrky24 oswrky53 oswrky70 triple mutant indicated that loss of OsWRKY70 also leads to increased seed length, suggesting that OsWRKY70 might play a role distinct from that of OsWRKY53 in regulating grain size
OsWRKY24	Os01g0826400	LOC_Os01g61080	seed length	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Importantly, a systematic characterization of seed length in the oswrky70 single, the oswrky53 oswrky70 double and the oswrky24 oswrky53 oswrky70 triple mutant indicated that loss of OsWRKY70 also leads to increased seed length, suggesting that OsWRKY70 might play a role distinct from that of OsWRKY53 in regulating grain size
OsWRKY28	Os06g0649000	LOC_Os06g44010	transcription factor	Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence	The transcription factor OsWRKY28 acts as a negative regulator of basal resistance, like the orthologous barley gene
OsWRKY28	Os06g0649000	LOC_Os06g44010	defense	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	In this study, we comprehensively analyzed the role of one of the group IIa WRKY transcription factors in rice, OsWRKY28, in the regulation of basal defense responses to a compatible race of the rice blast fungus Magnaporthe oryzae, strain Ina86-137
OsWRKY28	Os06g0649000	LOC_Os06g44010	defense	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	Finally, transcriptome analysis revealed that the induction of several defense-related genes in the wild type after Ina86-137 infection was counteracted in OsWRKY28-overexpressing rice plants
OsWRKY28	Os06g0649000	LOC_Os06g44010	defense	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	These results strongly suggest that OsWRKY28 is a negative regulator of basal defense responses against Ina86-137 and acts as a modulator to maintain the responses at an appropriate level by attenuating the activation of defense-related gene expression levels
OsWRKY28	Os06g0649000	LOC_Os06g44010	transcription factor	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	In this study, we comprehensively analyzed the role of one of the group IIa WRKY transcription factors in rice, OsWRKY28, in the regulation of basal defense responses to a compatible race of the rice blast fungus Magnaporthe oryzae, strain Ina86-137
OsWRKY28	Os06g0649000	LOC_Os06g44010	transcription factor	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	The expression analyses of the group IIa WRKY transcription factors in rice revealed that OsWRKY28, together with OsWRKY71, exhibit an early-induced expression prior to the late-induced expressions of OsWRKY62 and OsWRKY76
OsWRKY28	Os06g0649000	LOC_Os06g44010	disease resistance	OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity	Here, we report that a large inverted repeat construct designed to knock down the expression of the four OsWRKY IIa subfamily members (OsWRKY62, OsWRKY28, OsWRKY71, and OsWRKY76) leads to overexpression of all four genes and disease resistance in some transgenic plants
OsWRKY28	Os06g0649000	LOC_Os06g44010	disease	OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity	Here, we report that a large inverted repeat construct designed to knock down the expression of the four OsWRKY IIa subfamily members (OsWRKY62, OsWRKY28, OsWRKY71, and OsWRKY76) leads to overexpression of all four genes and disease resistance in some transgenic plants
OsWRKY28	Os06g0649000	LOC_Os06g44010	blast	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	In this study, we comprehensively analyzed the role of one of the group IIa WRKY transcription factors in rice, OsWRKY28, in the regulation of basal defense responses to a compatible race of the rice blast fungus Magnaporthe oryzae, strain Ina86-137
OsWRKY28	Os06g0649000	LOC_Os06g44010	blast	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus
OsWRKY28	Os06g0649000	LOC_Os06g44010	defense response	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	In this study, we comprehensively analyzed the role of one of the group IIa WRKY transcription factors in rice, OsWRKY28, in the regulation of basal defense responses to a compatible race of the rice blast fungus Magnaporthe oryzae, strain Ina86-137
OsWRKY28	Os06g0649000	LOC_Os06g44010	defense response	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	These results strongly suggest that OsWRKY28 is a negative regulator of basal defense responses against Ina86-137 and acts as a modulator to maintain the responses at an appropriate level by attenuating the activation of defense-related gene expression levels
OsWRKY28	Os06g0649000	LOC_Os06g44010	magnaporthe oryzae	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	In this study, we comprehensively analyzed the role of one of the group IIa WRKY transcription factors in rice, OsWRKY28, in the regulation of basal defense responses to a compatible race of the rice blast fungus Magnaporthe oryzae, strain Ina86-137
OsWRKY28	Os06g0649000	LOC_Os06g44010	root	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.
OsWRKY28	Os06g0649000	LOC_Os06g44010	root	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Exogenous JA treatments mimicked the phenotypes of the oswrky28 mutants with inhibited root elongation and decreased arsenate/phosphate translocation
OsWRKY28	Os06g0649000	LOC_Os06g44010	root	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Our results suggested that OsWRKY28 affected arsenate/phosphate accumulation, root development at the seedling stage and fertility at the reproductive stage possibly by influencing homeostasis of JA or other phytohormones
OsWRKY28	Os06g0649000	LOC_Os06g44010	seedling	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Our results suggested that OsWRKY28 affected arsenate/phosphate accumulation, root development at the seedling stage and fertility at the reproductive stage possibly by influencing homeostasis of JA or other phytohormones
OsWRKY28	Os06g0649000	LOC_Os06g44010	development	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Our results suggested that OsWRKY28 affected arsenate/phosphate accumulation, root development at the seedling stage and fertility at the reproductive stage possibly by influencing homeostasis of JA or other phytohormones
OsWRKY28	Os06g0649000	LOC_Os06g44010	oxidative stress	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	The expression of OsWRKY28 was markedly induced by arsenate and other oxidative stresses
OsWRKY28	Os06g0649000	LOC_Os06g44010	oxidative	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	The expression of OsWRKY28 was markedly induced by arsenate and other oxidative stresses
OsWRKY28	Os06g0649000	LOC_Os06g44010	root development	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Our results suggested that OsWRKY28 affected arsenate/phosphate accumulation, root development at the seedling stage and fertility at the reproductive stage possibly by influencing homeostasis of JA or other phytohormones
OsWRKY28	Os06g0649000	LOC_Os06g44010	root elongation	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Exogenous JA treatments mimicked the phenotypes of the oswrky28 mutants with inhibited root elongation and decreased arsenate/phosphate translocation
OsWRKY28	Os06g0649000	LOC_Os06g44010	reproductive	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Our results suggested that OsWRKY28 affected arsenate/phosphate accumulation, root development at the seedling stage and fertility at the reproductive stage possibly by influencing homeostasis of JA or other phytohormones
OsWRKY28	Os06g0649000	LOC_Os06g44010	architecture	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.
OsWRKY28	Os06g0649000	LOC_Os06g44010	homeostasis	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Our results suggested that OsWRKY28 affected arsenate/phosphate accumulation, root development at the seedling stage and fertility at the reproductive stage possibly by influencing homeostasis of JA or other phytohormones
OsWRKY28	Os06g0649000	LOC_Os06g44010	ja	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Exogenous JA treatments mimicked the phenotypes of the oswrky28 mutants with inhibited root elongation and decreased arsenate/phosphate translocation
OsWRKY28	Os06g0649000	LOC_Os06g44010	ja	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Our results suggested that OsWRKY28 affected arsenate/phosphate accumulation, root development at the seedling stage and fertility at the reproductive stage possibly by influencing homeostasis of JA or other phytohormones
OsWRKY28	Os06g0649000	LOC_Os06g44010	fertility	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.
OsWRKY28	Os06g0649000	LOC_Os06g44010	fertility	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Our results suggested that OsWRKY28 affected arsenate/phosphate accumulation, root development at the seedling stage and fertility at the reproductive stage possibly by influencing homeostasis of JA or other phytohormones
OsWRKY28	Os06g0649000	LOC_Os06g44010	JA	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Exogenous JA treatments mimicked the phenotypes of the oswrky28 mutants with inhibited root elongation and decreased arsenate/phosphate translocation
OsWRKY28	Os06g0649000	LOC_Os06g44010	JA	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	Our results suggested that OsWRKY28 affected arsenate/phosphate accumulation, root development at the seedling stage and fertility at the reproductive stage possibly by influencing homeostasis of JA or other phytohormones
OsWRKY28	Os06g0649000	LOC_Os06g44010	phosphate	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.
OsWRKY28	Os06g0649000	LOC_Os06g44010	phosphate	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	In a hydroponic experiment, loss-of-function mutation in OsWRKY28 resulted in lower accumulation of arsenate and phosphate concentration in the shoots
OsWRKY28	Os06g0649000	LOC_Os06g44010	root system architecture	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, Root System Architecture and Fertility in Rice.
OsWRKY29	Os07g0111400	LOC_Os07g02060	transcription factor	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.
OsWRKY29	Os07g0111400	LOC_Os07g02060	transcription factor	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	OsWRKY29 is a member of WRKY transcription factor family which located in the nuclear
OsWRKY29	Os07g0111400	LOC_Os07g02060	seed	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.
OsWRKY29	Os07g0111400	LOC_Os07g02060	seed	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	The genetic analyses showed that both knockout and RNAi lines of OsWRKY29 had enhanced seed dormancy whereas its overexpression lines displayed reduced seed dormancy
OsWRKY29	Os07g0111400	LOC_Os07g02060	seed	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	In summary, we identified a new ABA signaling repressor OsWRKY29 that represses seed dormancy by directly downregulating the expression of OsABF1 and OsVP1
OsWRKY29	Os07g0111400	LOC_Os07g02060	ABA	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	In addition, the expression levels of ABA positive response factors OsVP1 and OsABF1 were higher in the OsWRKY29 mutants but were lower in its overexpression lines
OsWRKY29	Os07g0111400	LOC_Os07g02060	ABA	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	In summary, we identified a new ABA signaling repressor OsWRKY29 that represses seed dormancy by directly downregulating the expression of OsABF1 and OsVP1
OsWRKY29	Os07g0111400	LOC_Os07g02060	abscisic acid	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.
OsWRKY29	Os07g0111400	LOC_Os07g02060	ABA	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	In addition, the expression levels of ABA positive response factors OsVP1 and OsABF1 were higher in the OsWRKY29 mutants but were lower in its overexpression lines
OsWRKY29	Os07g0111400	LOC_Os07g02060	ABA	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	In summary, we identified a new ABA signaling repressor OsWRKY29 that represses seed dormancy by directly downregulating the expression of OsABF1 and OsVP1
OsWRKY29	Os07g0111400	LOC_Os07g02060	dormancy	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.
OsWRKY29	Os07g0111400	LOC_Os07g02060	dormancy	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	Here, we identified an  Oswrky29 mutant with enhanced dormancy in a screen of T-DNA insertion population
OsWRKY29	Os07g0111400	LOC_Os07g02060	dormancy	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	The genetic analyses showed that both knockout and RNAi lines of OsWRKY29 had enhanced seed dormancy whereas its overexpression lines displayed reduced seed dormancy
OsWRKY29	Os07g0111400	LOC_Os07g02060	dormancy	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response.	In summary, we identified a new ABA signaling repressor OsWRKY29 that represses seed dormancy by directly downregulating the expression of OsABF1 and OsVP1
OsWRKY29	Os07g0111400	LOC_Os07g02060	seed dormancy	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response
OsWRKY29	Os07g0111400	LOC_Os07g02060	seed dormancy	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response	The genetic analyses showed that both knockout and RNAi lines of OsWRKY29 had enhanced seed dormancy whereas its overexpression lines displayed reduced seed dormancy.
OsWRKY29	Os07g0111400	LOC_Os07g02060	seed dormancy	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response	OsWRKY29 Functions as a Negative Regulator of Seed Dormancy
OsWRKY29	Os07g0111400	LOC_Os07g02060	seed germination	WRKY Transcription Factor OsWRKY29 Represses Seed Dormancy in Rice by Weakening Abscisic Acid Response	OsWRKY29 Acts as a Repressor of ABA-Inhibited Seed Germination
OsWRKY30	Os08g0499300	LOC_Os08g38990	drought	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice	Overexpression of OsWRKY30 in rice dramatically increased drought tolerance
OsWRKY30	Os08g0499300	LOC_Os08g38990	drought	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice	Overexpression of OsWRKY30AA, in which all SP (serine residue followed by proline residue) sites were replaced by AP (A, alanine), resulted in no improvement in drought tolerance
OsWRKY30	Os08g0499300	LOC_Os08g38990	drought	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice
OsWRKY30	Os08g0499300	LOC_Os08g38990	drought tolerance	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice	Overexpression of OsWRKY30 in rice dramatically increased drought tolerance
OsWRKY30	Os08g0499300	LOC_Os08g38990	drought tolerance	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice	Overexpression of OsWRKY30AA, in which all SP (serine residue followed by proline residue) sites were replaced by AP (A, alanine), resulted in no improvement in drought tolerance
OsWRKY30	Os08g0499300	LOC_Os08g38990	drought tolerance	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice
OsWRKY30	Os08g0499300	LOC_Os08g38990	 ja 	A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response	OsWRKY30 and OsWRKY83 responded to both SA- and JA treatments
OsWRKY30	Os08g0499300	LOC_Os08g38990	leaf	Functional Involvement of a Mitogen Activated Protein Kinase Module, OsMKK3-OsMPK7-OsWRK30 in Mediating Resistance against Xanthomonas oryzae in Rice.	 Here we report involvement of a poorly characterized group C MAPK of rice namely, OsMPK7 along with its upstream MAPK kinase, OsMKK3 and downstream target, OsWRKY30 during Xanthomonas oryzae infection, a causal agent of leaf blight disease in rice
OsWRKY30	Os08g0499300	LOC_Os08g38990	disease	Functional Involvement of a Mitogen Activated Protein Kinase Module, OsMKK3-OsMPK7-OsWRK30 in Mediating Resistance against Xanthomonas oryzae in Rice.	 Here we report involvement of a poorly characterized group C MAPK of rice namely, OsMPK7 along with its upstream MAPK kinase, OsMKK3 and downstream target, OsWRKY30 during Xanthomonas oryzae infection, a causal agent of leaf blight disease in rice
OsWRKY30	Os08g0499300	LOC_Os08g38990	blight	Functional Involvement of a Mitogen Activated Protein Kinase Module, OsMKK3-OsMPK7-OsWRK30 in Mediating Resistance against Xanthomonas oryzae in Rice.	 Here we report involvement of a poorly characterized group C MAPK of rice namely, OsMPK7 along with its upstream MAPK kinase, OsMKK3 and downstream target, OsWRKY30 during Xanthomonas oryzae infection, a causal agent of leaf blight disease in rice
OsWRKY30	Os08g0499300	LOC_Os08g38990	defence	Functional Involvement of a Mitogen Activated Protein Kinase Module, OsMKK3-OsMPK7-OsWRK30 in Mediating Resistance against Xanthomonas oryzae in Rice.	 Furthermore, OsWRKY30 was identified as downstream target of OsMPK7 through protein-protein interaction techniques and was found to be a positive regulator of defence response against X
OsWRKY30	Os08g0499300	LOC_Os08g38990	defence response	Functional Involvement of a Mitogen Activated Protein Kinase Module, OsMKK3-OsMPK7-OsWRK30 in Mediating Resistance against Xanthomonas oryzae in Rice.	 Furthermore, OsWRKY30 was identified as downstream target of OsMPK7 through protein-protein interaction techniques and was found to be a positive regulator of defence response against X
OsWRKY30	Os08g0499300	LOC_Os08g38990	blight disease	Functional Involvement of a Mitogen Activated Protein Kinase Module, OsMKK3-OsMPK7-OsWRK30 in Mediating Resistance against Xanthomonas oryzae in Rice.	 Here we report involvement of a poorly characterized group C MAPK of rice namely, OsMPK7 along with its upstream MAPK kinase, OsMKK3 and downstream target, OsWRKY30 during Xanthomonas oryzae infection, a causal agent of leaf blight disease in rice
OsWRKY30	Os08g0499300	LOC_Os08g38990	leaf	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsWRKY30	Os08g0499300	LOC_Os08g38990	resistance	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsWRKY30	Os08g0499300	LOC_Os08g38990	resistance	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Genetic assays confirmed that the osilc knockout mutants and OsWRKY30-overexpressing plants exhibited enhanced resistance to Xoo and Xoc, knocking out OsWRKY30 in the oslic mutants attenuated the resistance against bacterial pathogens
OsWRKY30	Os08g0499300	LOC_Os08g38990	resistance	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Collectively, these results reveal that OsMAPK6-mediated phosphorylation of OsLIC positively regulates rice resistance to Xoo and Xoc by modulating OsWRKY30 transcription, suggesting that OsMAPK6-OsLIC-OsWRKY30 module is an immune signaling pathway in response to the bacterial pathogens
OsWRKY30	Os08g0499300	LOC_Os08g38990	blight	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsWRKY30	Os08g0499300	LOC_Os08g38990	bacterial blight	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsWRKY30	Os08g0499300	LOC_Os08g38990	R protein	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsWRKY30	Os08g0499300	LOC_Os08g38990	zinc	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.
OsWRKY30	Os08g0499300	LOC_Os08g38990	xoo	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Genetic assays confirmed that the osilc knockout mutants and OsWRKY30-overexpressing plants exhibited enhanced resistance to Xoo and Xoc, knocking out OsWRKY30 in the oslic mutants attenuated the resistance against bacterial pathogens
OsWRKY30	Os08g0499300	LOC_Os08g38990	xoo	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Collectively, these results reveal that OsMAPK6-mediated phosphorylation of OsLIC positively regulates rice resistance to Xoo and Xoc by modulating OsWRKY30 transcription, suggesting that OsMAPK6-OsLIC-OsWRKY30 module is an immune signaling pathway in response to the bacterial pathogens
OsWRKY30	Os08g0499300	LOC_Os08g38990	Xoo	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Genetic assays confirmed that the osilc knockout mutants and OsWRKY30-overexpressing plants exhibited enhanced resistance to Xoo and Xoc, knocking out OsWRKY30 in the oslic mutants attenuated the resistance against bacterial pathogens
OsWRKY30	Os08g0499300	LOC_Os08g38990	Xoo	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Collectively, these results reveal that OsMAPK6-mediated phosphorylation of OsLIC positively regulates rice resistance to Xoo and Xoc by modulating OsWRKY30 transcription, suggesting that OsMAPK6-OsLIC-OsWRKY30 module is an immune signaling pathway in response to the bacterial pathogens
OsWRKY30	Os08g0499300	LOC_Os08g38990	 xoo 	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Genetic assays confirmed that the osilc knockout mutants and OsWRKY30-overexpressing plants exhibited enhanced resistance to Xoo and Xoc, knocking out OsWRKY30 in the oslic mutants attenuated the resistance against bacterial pathogens
OsWRKY30	Os08g0499300	LOC_Os08g38990	 xoo 	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	 Collectively, these results reveal that OsMAPK6-mediated phosphorylation of OsLIC positively regulates rice resistance to Xoo and Xoc by modulating OsWRKY30 transcription, suggesting that OsMAPK6-OsLIC-OsWRKY30 module is an immune signaling pathway in response to the bacterial pathogens
OsWRKY31	Os06g0504900	LOC_Os06g30860	disease	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants
OsWRKY31	Os06g0504900	LOC_Os06g30860	root	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants
OsWRKY31	Os06g0504900	LOC_Os06g30860	auxin	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	In this study, we isolated a rice WRKY gene (OsWRKY31) that is induced by the rice blast fungus Magnaporthe grisea and auxin
OsWRKY31	Os06g0504900	LOC_Os06g30860	auxin	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	Furthermore, the plants with overexpression were less sensitive to exogenously supplied IBA, NAA and 2,4-D at high concentrations, suggesting that overexpression of the OsWRKY31 gene might alter the auxin response or transport
OsWRKY31	Os06g0504900	LOC_Os06g30860	auxin	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	These results also suggest that OsWRKY31 might be a common component in the signal transduction pathways of the auxin response and the defense response in rice
OsWRKY31	Os06g0504900	LOC_Os06g30860	auxin	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants
OsWRKY31	Os06g0504900	LOC_Os06g30860	growth	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants
OsWRKY31	Os06g0504900	LOC_Os06g30860	disease resistance	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants
OsWRKY31	Os06g0504900	LOC_Os06g30860	blast	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	In this study, we isolated a rice WRKY gene (OsWRKY31) that is induced by the rice blast fungus Magnaporthe grisea and auxin
OsWRKY31	Os06g0504900	LOC_Os06g30860	defense response	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	These results also suggest that OsWRKY31 might be a common component in the signal transduction pathways of the auxin response and the defense response in rice
OsWRKY31	Os06g0504900	LOC_Os06g30860	defense	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants	These results also suggest that OsWRKY31 might be a common component in the signal transduction pathways of the auxin response and the defense response in rice
OsWRKY36|SGSD3	Os04g0545000	LOC_Os04g46060	culm	Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice	Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice
OsWRKY36|SGSD3	Os04g0545000	LOC_Os04g46060	cell wall	Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice	To collect information on enhancing lignin deposition in grass species, important lignocellulose feedstocks, we generated rice (Oryza sativa) transgenic lines deficient in OsWRKY36 and OsWRKY102, which encode putative transcriptional repressors for secondary cell wall formation
OsWRKY36|SGSD3	Os04g0545000	LOC_Os04g46060	lignin	Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice	To collect information on enhancing lignin deposition in grass species, important lignocellulose feedstocks, we generated rice (Oryza sativa) transgenic lines deficient in OsWRKY36 and OsWRKY102, which encode putative transcriptional repressors for secondary cell wall formation
OsWRKY36|SGSD3	Os04g0545000	LOC_Os04g46060	lignin	Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice	Both OsWRKY36 and OsWRKY102 mutations significantly increased lignin content by up to 28 % and 32 %, respectively
OsWRKY36|SGSD3	Os04g0545000	LOC_Os04g46060	grain	Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size by stabilizing SLR1 expression in rice	This was confirmed by the finding that overexpression of OsWRKY36 caused a similar small grain and semi-dwarf phenotype to the sgsd3 mutant whereas knock down and knock out caused larger grain phenotypes
OsWRKY36|SGSD3	Os04g0545000	LOC_Os04g46060	ga	Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size by stabilizing SLR1 expression in rice	The sgsd3 mutant was also hyposensitive to GA and accumulated higher mRNA and protein levels of SLR1 (a GA signaling DELLA-like inhibitor) compared with the WT
OsWRKY36|SGSD3	Os04g0545000	LOC_Os04g46060	GA	Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size by stabilizing SLR1 expression in rice	The sgsd3 mutant was also hyposensitive to GA and accumulated higher mRNA and protein levels of SLR1 (a GA signaling DELLA-like inhibitor) compared with the WT
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	resistance	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	Modulation of OsWRKY4 transcript levels by constitutive overexpression increases resistance to the necrotrophic sheath blight fungus, concomitant with elevated expression of JA- and ET-responsive pathogenesis-related (PR) genes such as PR1a, PR1b, PR5 and PR10/PBZ1
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	sheath	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	Modulation of OsWRKY4 transcript levels by constitutive overexpression increases resistance to the necrotrophic sheath blight fungus, concomitant with elevated expression of JA- and ET-responsive pathogenesis-related (PR) genes such as PR1a, PR1b, PR5 and PR10/PBZ1
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	sheath	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	In conclusion, we propose that OsWRKY4 functions as an important positive regulator that is implicated in the defense responses to rice sheath blight via JA/ET-dependent signal pathway
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	defense	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	In conclusion, we propose that OsWRKY4 functions as an important positive regulator that is implicated in the defense responses to rice sheath blight via JA/ET-dependent signal pathway
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	defense response	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	In conclusion, we propose that OsWRKY4 functions as an important positive regulator that is implicated in the defense responses to rice sheath blight via JA/ET-dependent signal pathway
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	blight	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	Modulation of OsWRKY4 transcript levels by constitutive overexpression increases resistance to the necrotrophic sheath blight fungus, concomitant with elevated expression of JA- and ET-responsive pathogenesis-related (PR) genes such as PR1a, PR1b, PR5 and PR10/PBZ1
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	blight	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	In conclusion, we propose that OsWRKY4 functions as an important positive regulator that is implicated in the defense responses to rice sheath blight via JA/ET-dependent signal pathway
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	nucleus	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	OsWRKY4 is localized to the nucleus of plant cells and possesses transcriptional activation ability
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	sheath	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani.	We propose that OsWRKY80 functions upstream of OsWRKY4 as an important positive regulatory circuit that is implicated in rice defense response to sheath blight pathogen R
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	defense	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani.	We propose that OsWRKY80 functions upstream of OsWRKY4 as an important positive regulatory circuit that is implicated in rice defense response to sheath blight pathogen R
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	defense response	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani.	We propose that OsWRKY80 functions upstream of OsWRKY4 as an important positive regulatory circuit that is implicated in rice defense response to sheath blight pathogen R
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	blight	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani.	We propose that OsWRKY80 functions upstream of OsWRKY4 as an important positive regulatory circuit that is implicated in rice defense response to sheath blight pathogen R
OsWRKY4	Os03g0758900|Os03g0758950	LOC_Os03g55164	pathogen	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani.	We propose that OsWRKY80 functions upstream of OsWRKY4 as an important positive regulatory circuit that is implicated in rice defense response to sheath blight pathogen R
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	leaf	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	leaf	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.	Our results thus suggest that OsWRKY42 represses OsMT1d-mediated ROS scavenging and thereby promotes leaf senescence in rice
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	senescence	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	senescence	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.	Our results thus suggest that OsWRKY42 represses OsMT1d-mediated ROS scavenging and thereby promotes leaf senescence in rice
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	leaf senescence	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	ja	The WRKY45-2-WRKY13-WRKY42 Transcriptional Regulatory Cascade Is Required for Rice Resistance to Fungal Pathogen.	oryzae by suppressing JA signaling-related genes, and WRKY45-2 transcriptionally activates WRKY13, whose encoding protein in turn transcriptionally suppresses WRKY42 to regulate rice resistance to M
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	JA	The WRKY45-2-WRKY13-WRKY42 Transcriptional Regulatory Cascade Is Required for Rice Resistance to Fungal Pathogen.	oryzae by suppressing JA signaling-related genes, and WRKY45-2 transcriptionally activates WRKY13, whose encoding protein in turn transcriptionally suppresses WRKY42 to regulate rice resistance to M
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	resistance	The WRKY45-2-WRKY13-WRKY42 Transcriptional Regulatory Cascade Is Required for Rice Resistance to Fungal Pathogen.	oryzae by suppressing JA signaling-related genes, and WRKY45-2 transcriptionally activates WRKY13, whose encoding protein in turn transcriptionally suppresses WRKY42 to regulate rice resistance to M
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	transcription factor	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Expression of the rice transcription factor OsWRKY42 is induced upon treatment of rice leaves with CWDEs, wounding and salt
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	growth	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	OsWRKY42 expressing Arabidopsis lines exhibited enhanced tolerance to methyl jasmonate mediated growth inhibition
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	salinity	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	The results presented here suggest that OsWRKY42 regulates plant responses to either cell wall damage or salinity stress by acting as a negative regulator of jasmonic acid mediated responses
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	salt	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Expression of the rice transcription factor OsWRKY42 is induced upon treatment of rice leaves with CWDEs, wounding and salt
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	salt	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Upon treatment with NaCl, Arabidopsis transgenic plants expressing OsWRKY42 exhibited high levels of anthocyanin and displayed enhanced tolerance to salt stress
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	salt	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Ectopic expression of OsWRKY42 results in reduced expression of cell wall damage and salt stress induced jasmonic acid biosynthesis and response genes
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	tolerance	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Overexpression of OsWRKY42 leads to enhanced callose deposition in rice and Arabidopsis but this does not enhance tolerance to bacterial infection
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	tolerance	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Upon treatment with NaCl, Arabidopsis transgenic plants expressing OsWRKY42 exhibited high levels of anthocyanin and displayed enhanced tolerance to salt stress
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	tolerance	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	OsWRKY42 expressing Arabidopsis lines exhibited enhanced tolerance to methyl jasmonate mediated growth inhibition
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	jasmonate	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	OsWRKY42 expressing Arabidopsis lines exhibited enhanced tolerance to methyl jasmonate mediated growth inhibition
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	salt stress	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Upon treatment with NaCl, Arabidopsis transgenic plants expressing OsWRKY42 exhibited high levels of anthocyanin and displayed enhanced tolerance to salt stress
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	salt stress	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Ectopic expression of OsWRKY42 results in reduced expression of cell wall damage and salt stress induced jasmonic acid biosynthesis and response genes
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	stress	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Upon treatment with NaCl, Arabidopsis transgenic plants expressing OsWRKY42 exhibited high levels of anthocyanin and displayed enhanced tolerance to salt stress
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	stress	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Ectopic expression of OsWRKY42 results in reduced expression of cell wall damage and salt stress induced jasmonic acid biosynthesis and response genes
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	stress	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	The results presented here suggest that OsWRKY42 regulates plant responses to either cell wall damage or salinity stress by acting as a negative regulator of jasmonic acid mediated responses
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	salinity stress	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	The results presented here suggest that OsWRKY42 regulates plant responses to either cell wall damage or salinity stress by acting as a negative regulator of jasmonic acid mediated responses
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	cell wall	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Treatment with either one of the two different cell wall degrading enzymes (CWDEs), LipaseA and CellulaseA, induces immune responses and enhances the expression of OsWRKY42 in rice
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	cell wall	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Ectopic expression of OsWRKY42 results in reduced expression of cell wall damage and salt stress induced jasmonic acid biosynthesis and response genes
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	cell wall	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	The results presented here suggest that OsWRKY42 regulates plant responses to either cell wall damage or salinity stress by acting as a negative regulator of jasmonic acid mediated responses
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	jasmonic	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Ectopic expression of OsWRKY42 results in reduced expression of cell wall damage and salt stress induced jasmonic acid biosynthesis and response genes
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	jasmonic	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	The results presented here suggest that OsWRKY42 regulates plant responses to either cell wall damage or salinity stress by acting as a negative regulator of jasmonic acid mediated responses
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	jasmonic acid	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Ectopic expression of OsWRKY42 results in reduced expression of cell wall damage and salt stress induced jasmonic acid biosynthesis and response genes
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	jasmonic acid	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	The results presented here suggest that OsWRKY42 regulates plant responses to either cell wall damage or salinity stress by acting as a negative regulator of jasmonic acid mediated responses
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	immune response	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Treatment with either one of the two different cell wall degrading enzymes (CWDEs), LipaseA and CellulaseA, induces immune responses and enhances the expression of OsWRKY42 in rice
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	immune response	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	However, the role of OsWRKY42 in CWDE induced immune responses is not known
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	wounding	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	Expression of the rice transcription factor OsWRKY42 is induced upon treatment of rice leaves with CWDEs, wounding and salt
OsWRKY42|WRKY42	Os02g0462800	LOC_Os02g26430	methyl jasmonate	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	OsWRKY42 expressing Arabidopsis lines exhibited enhanced tolerance to methyl jasmonate mediated growth inhibition
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease	Rice WRKY45 plays important roles in fungal and bacterial disease resistance	We have reported previously that a transcription factor identified in rice, WRKY45 (OsWRKY45), plays a pivotal role in BTH-induced disease resistance by mediating SA signalling
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	transcription factor	Rice WRKY45 plays important roles in fungal and bacterial disease resistance	We have reported previously that a transcription factor identified in rice, WRKY45 (OsWRKY45), plays a pivotal role in BTH-induced disease resistance by mediating SA signalling
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	cold tolerance	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	abiotic stress	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis	Together, these results indicate that the OsWRKY45 may be involved in the signal pathways of both biotic and abiotic stress response
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	Here it is shown that the alleles OsWRKY45-1 and OsWRKY45-2 play different roles in abscisic acid (ABA) signalling and salt stress adaptation in rice
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	OsWRKY45-1 transgenic plants showed no obvious difference from negative controls in response to salt stress
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	In contrast, OsWRKY45-2-overexpressing lines showed increased ABA sensitivity and reduced salt stress tolerance, and OsWRKY45-2-suppressing lines showed reduced ABA sensitivity and increased salt stress tolerance
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	These results suggest that OsWRKY45-1 negatively and OsWRKY45-2 positively regulates ABA signalling and, in addition, OsWRKY45-2 but not OsWRKY45-1 negatively regulates rice response to salt stress
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt stress	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	Here it is shown that the alleles OsWRKY45-1 and OsWRKY45-2 play different roles in abscisic acid (ABA) signalling and salt stress adaptation in rice
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt stress	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	OsWRKY45-1 transgenic plants showed no obvious difference from negative controls in response to salt stress
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt stress	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	In contrast, OsWRKY45-2-overexpressing lines showed increased ABA sensitivity and reduced salt stress tolerance, and OsWRKY45-2-suppressing lines showed reduced ABA sensitivity and increased salt stress tolerance
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt stress	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	These results suggest that OsWRKY45-1 negatively and OsWRKY45-2 positively regulates ABA signalling and, in addition, OsWRKY45-2 but not OsWRKY45-1 negatively regulates rice response to salt stress
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salt stress	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	 ABA 	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	OsWRKY45-1-overexpressing lines showed reduced ABA sensitivity, whereas OsWRKY45-1-knockout lines showed increased ABA sensitivity
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	 ABA 	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	In contrast, OsWRKY45-2-overexpressing lines showed increased ABA sensitivity and reduced salt stress tolerance, and OsWRKY45-2-suppressing lines showed reduced ABA sensitivity and increased salt stress tolerance
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	 ABA 	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	These results suggest that OsWRKY45-1 negatively and OsWRKY45-2 positively regulates ABA signalling and, in addition, OsWRKY45-2 but not OsWRKY45-1 negatively regulates rice response to salt stress
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	defense	A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions	OsWRKY45-1-regulated Xoo resistance was accompanied by increased accumulation of salicylic acid and jasmonic acid and induced expression of a subset of defense-responsive genes, while OsWRKY45-2-regulated Xoo resistance was accompanied by increased accumulation of jasmonic acid but not salicylic acid and induced expression of another subset of defense-responsive genes
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	drought tolerance	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	abiotic stress	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	OsWRKY45-1 and OsWRKY45-2 transgenic plants showed differential expression of a set of ABA- and abiotic stress-responsive genes, but they showed similar responses to cold and drought stresses
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salicylic acid	A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions	OsWRKY45-1-regulated Xoo resistance was accompanied by increased accumulation of salicylic acid and jasmonic acid and induced expression of a subset of defense-responsive genes, while OsWRKY45-2-regulated Xoo resistance was accompanied by increased accumulation of jasmonic acid but not salicylic acid and induced expression of another subset of defense-responsive genes
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	jasmonic acid	A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions	OsWRKY45-1-regulated Xoo resistance was accompanied by increased accumulation of salicylic acid and jasmonic acid and induced expression of a subset of defense-responsive genes, while OsWRKY45-2-regulated Xoo resistance was accompanied by increased accumulation of jasmonic acid but not salicylic acid and induced expression of another subset of defense-responsive genes
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	biotic stress	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis	Together, these results indicate that the OsWRKY45 may be involved in the signal pathways of both biotic and abiotic stress response
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease resistance	Rice WRKY45 plays important roles in fungal and bacterial disease resistance	We have reported previously that a transcription factor identified in rice, WRKY45 (OsWRKY45), plays a pivotal role in BTH-induced disease resistance by mediating SA signalling
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease resistance	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	 ABA 	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis	The relationship between OsWRKY45 expression and ABA signalling is discussed
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	jasmonic	A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions	OsWRKY45-1-regulated Xoo resistance was accompanied by increased accumulation of salicylic acid and jasmonic acid and induced expression of a subset of defense-responsive genes, while OsWRKY45-2-regulated Xoo resistance was accompanied by increased accumulation of jasmonic acid but not salicylic acid and induced expression of another subset of defense-responsive genes
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	drought	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	drought	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	OsWRKY45-1 and OsWRKY45-2 transgenic plants showed differential expression of a set of ABA- and abiotic stress-responsive genes, but they showed similar responses to cold and drought stresses
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	drought	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	 xoo 	A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions	OsWRKY45-1-overexpressing plants showed increased susceptibility and OsWRKY45-1-knockout plants showed enhanced resistance to Xoo and Xoc
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	 xoo 	A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions	In contrast, OsWRKY45-2-overexpressing plants showed enhanced resistance and OsWRKY45-2-suppressing plants showed increased susceptibility to Xoo and Xoc
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	 xoo 	A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions	OsWRKY45-1-regulated Xoo resistance was accompanied by increased accumulation of salicylic acid and jasmonic acid and induced expression of a subset of defense-responsive genes, while OsWRKY45-2-regulated Xoo resistance was accompanied by increased accumulation of jasmonic acid but not salicylic acid and induced expression of another subset of defense-responsive genes
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	 sa 	Rice WRKY45 plays important roles in fungal and bacterial disease resistance	We have reported previously that a transcription factor identified in rice, WRKY45 (OsWRKY45), plays a pivotal role in BTH-induced disease resistance by mediating SA signalling
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	temperature	Development of disease-resistant rice by optimized expression of WRKY45.	Interestingly, excessive WRKY45 expression rendered rice plants sensitive to low temperature and salinity, and stress sensitivity was correlated with the induction of defence genes by these stresses
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	growth	Development of disease-resistant rice by optimized expression of WRKY45.	Previously, we reported that rice transformants overexpressing WRKY45 driven by the maize ubiquitin promoter were strongly resistant to both pathogens; however, their growth and yield were negatively affected because of the trade-off between the two conflicting traits
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	yield	Development of disease-resistant rice by optimized expression of WRKY45.	Previously, we reported that rice transformants overexpressing WRKY45 driven by the maize ubiquitin promoter were strongly resistant to both pathogens; however, their growth and yield were negatively affected because of the trade-off between the two conflicting traits
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease	Development of disease-resistant rice by optimized expression of WRKY45.	Comparisons among different transformant lines showed that, overall, the strength of WRKY45 expression was positively correlated with disease resistance and negatively correlated with agronomic traits
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistant	Development of disease-resistant rice by optimized expression of WRKY45.	Previously, we reported that rice transformants overexpressing WRKY45 driven by the maize ubiquitin promoter were strongly resistant to both pathogens; however, their growth and yield were negatively affected because of the trade-off between the two conflicting traits
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistant	Development of disease-resistant rice by optimized expression of WRKY45.	The agronomic traits of two lines expressing WRKY45 driven by the OsUbi7 promoter (PO sUbi7 lines) were nearly comparable to those of untransformed rice, and both lines were pathogen resistant
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	defence	Development of disease-resistant rice by optimized expression of WRKY45.	Interestingly, excessive WRKY45 expression rendered rice plants sensitive to low temperature and salinity, and stress sensitivity was correlated with the induction of defence genes by these stresses
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	stress	Development of disease-resistant rice by optimized expression of WRKY45.	Interestingly, excessive WRKY45 expression rendered rice plants sensitive to low temperature and salinity, and stress sensitivity was correlated with the induction of defence genes by these stresses
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistance	Development of disease-resistant rice by optimized expression of WRKY45.	The rice transcription factor WRKY45 plays a central role in the salicylic acid signalling pathway and mediates chemical-induced resistance to multiple pathogens, including Magnaporthe oryzae and Xanthomonas oryzae pv
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistance	Development of disease-resistant rice by optimized expression of WRKY45.	Comparisons among different transformant lines showed that, overall, the strength of WRKY45 expression was positively correlated with disease resistance and negatively correlated with agronomic traits
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	Ubiquitin	Development of disease-resistant rice by optimized expression of WRKY45.	Previously, we reported that rice transformants overexpressing WRKY45 driven by the maize ubiquitin promoter were strongly resistant to both pathogens; however, their growth and yield were negatively affected because of the trade-off between the two conflicting traits
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistance	Development of disease-resistant rice by pathogen-responsive expression of WRKY45.	WRKY45 is an important transcription factor in the salicylic acid signalling pathway in rice that mediates chemical-induced resistance against multiple pathogens
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistance	Development of disease-resistant rice by pathogen-responsive expression of WRKY45.	Here, a new strategy to confer rice with strong disease resistance without any negative effects on agronomic traits was established by expressing WRKY45 under the control of pathogen-responsive promoters in combination with a translational enhancer derived from a 5'-untranslated region (UTR) of rice alcohol dehydrogenase (ADH)
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	transcription factor	Development of disease-resistant rice by pathogen-responsive expression of WRKY45.	WRKY45 is an important transcription factor in the salicylic acid signalling pathway in rice that mediates chemical-induced resistance against multiple pathogens
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease	Development of disease-resistant rice by pathogen-responsive expression of WRKY45.	Here, a new strategy to confer rice with strong disease resistance without any negative effects on agronomic traits was established by expressing WRKY45 under the control of pathogen-responsive promoters in combination with a translational enhancer derived from a 5'-untranslated region (UTR) of rice alcohol dehydrogenase (ADH)
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	salicylic acid	Development of disease-resistant rice by pathogen-responsive expression of WRKY45.	WRKY45 is an important transcription factor in the salicylic acid signalling pathway in rice that mediates chemical-induced resistance against multiple pathogens
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease resistance	Development of disease-resistant rice by pathogen-responsive expression of WRKY45.	Here, a new strategy to confer rice with strong disease resistance without any negative effects on agronomic traits was established by expressing WRKY45 under the control of pathogen-responsive promoters in combination with a translational enhancer derived from a 5'-untranslated region (UTR) of rice alcohol dehydrogenase (ADH)
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	breeding	Development of disease-resistant rice by pathogen-responsive expression of WRKY45.	Thus, expressing WRKY45 under the control of the PR1b promoter with the ADH 5'-UTR is an excellent strategy to develop disease-resistant rice, and the line established could serve as a mother line for breeding disease-resistant rice
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	temperature	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	The activation of WRKY45 by benzothiadiazole (BTH) was reduced under low temperature and high salinity, probably through abscisic acid (ABA) signalling
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	transcription factor	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	Phosphorylation of WRKY45, the central transcription factor in salicylic-acid (SA)-signalling-dependent pathogen defence in rice, via the OsMKK10-2-OsMPK6 cascade, was required to fully activate WRKY45
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	 ABA 	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	An ABA treatment dephosphorylated/inactivated OsMPK6 via protein tyrosine phosphatases, OsPTP1/2, leading to the impaired activation of WRKY45 and a reduction in Magnaporthe oryzae resistance, even after BTH treatment
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	magnaporthe oryzae	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	An ABA treatment dephosphorylated/inactivated OsMPK6 via protein tyrosine phosphatases, OsPTP1/2, leading to the impaired activation of WRKY45 and a reduction in Magnaporthe oryzae resistance, even after BTH treatment
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	ABA	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	An ABA treatment dephosphorylated/inactivated OsMPK6 via protein tyrosine phosphatases, OsPTP1/2, leading to the impaired activation of WRKY45 and a reduction in Magnaporthe oryzae resistance, even after BTH treatment
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	abscisic acid	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	The activation of WRKY45 by benzothiadiazole (BTH) was reduced under low temperature and high salinity, probably through abscisic acid (ABA) signalling
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	defence	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	Phosphorylation of WRKY45, the central transcription factor in salicylic-acid (SA)-signalling-dependent pathogen defence in rice, via the OsMKK10-2-OsMPK6 cascade, was required to fully activate WRKY45
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	pathogen	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	Phosphorylation of WRKY45, the central transcription factor in salicylic-acid (SA)-signalling-dependent pathogen defence in rice, via the OsMKK10-2-OsMPK6 cascade, was required to fully activate WRKY45
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistance	Transposon-derived small RNA is responsible for modified function of WRKY45 locus.	Here we show that a TE-siRNA, TE-siR815, causes opposite functions for the two alleles, WRKY45-1 and WRKY45-2, of the WRKY45 transcription factor in rice resistance to Xanthomonas oryzae pv
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistance	Transposon-derived small RNA is responsible for modified function of WRKY45 locus.	These results suggest that TE-siR815 contributes to the natural variation of the WRKY45 locus and TE-siR815-induced suppression of ST1 results in the negative role of WRKY45-1 but positive role of WRKY45-2 in regulating disease resistance
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	transcription factor	Transposon-derived small RNA is responsible for modified function of WRKY45 locus.	Here we show that a TE-siRNA, TE-siR815, causes opposite functions for the two alleles, WRKY45-1 and WRKY45-2, of the WRKY45 transcription factor in rice resistance to Xanthomonas oryzae pv
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease	Transposon-derived small RNA is responsible for modified function of WRKY45 locus.	These results suggest that TE-siR815 contributes to the natural variation of the WRKY45 locus and TE-siR815-induced suppression of ST1 results in the negative role of WRKY45-1 but positive role of WRKY45-2 in regulating disease resistance
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease resistance	Transposon-derived small RNA is responsible for modified function of WRKY45 locus.	These results suggest that TE-siR815 contributes to the natural variation of the WRKY45 locus and TE-siR815-induced suppression of ST1 results in the negative role of WRKY45-1 but positive role of WRKY45-2 in regulating disease resistance
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistance	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistance	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	These findings suggest that OsWRKY45 plays important but contrasting roles in regulating the resistance of rice to pathogens and herbivores, and attention should be paid if OsWRKY45 is used to develop disease or herbivore-resistant rice
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	development	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	The antisense expression of OsWRKY45 (as-wrky) enhanced BPH-induced levels of ethylene, reduced feeding and oviposition preference as well as the survival rate of BPH, and delayed the development of BPH nymphs
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	transcription factor	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	brown planthopper	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	disease	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	These findings suggest that OsWRKY45 plays important but contrasting roles in regulating the resistance of rice to pathogens and herbivores, and attention should be paid if OsWRKY45 is used to develop disease or herbivore-resistant rice
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	leaf	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	resistance	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	blight	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	blast	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
OsWRKY45|WRKY45	Os05g0322900	LOC_Os05g25770	blast resistance	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	 Mutation of WRKY45 compromises the enhanced blast resistance and bacterial leaf blight resistance conferred by arf8 mutant
OsWRKY47	Os07g0680400	LOC_Os07g48260	blast	Transcriptional Profiling of Rice Early Response to Magnaporthe oryzae Identified OsWRKYs as Important Regulators in Rice Blast Resistance	Overexpressing one of these WRKY genes, OsWRKY47, in transgenic rice plants conferred enhanced resistance against rice blast fungus
OsWRKY47	Os07g0680400	LOC_Os07g48260	transcription factor	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.
OsWRKY47	Os07g0680400	LOC_Os07g48260	transcription factor	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.	OsWRKY47 is a divergent rice transcription factor belonging to the group II of the WRKY family
OsWRKY47	Os07g0680400	LOC_Os07g48260	drought	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.	A transcriptomic analysis of the drought response of transgenic rice plants expressing P SARK ::IPT, validated by qPCR, indicated that OsWRKY47 expression was induced under drought stress in P SARK ::IPT plants
OsWRKY47	Os07g0680400	LOC_Os07g48260	drought	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.	Phenotypic analysis carried out with transgenic rice plants showed that Oswrky47 mutants displayed higher sensitivity to drought and reduced yield, while plants overexpressing OsWRKY47 were more tolerant
OsWRKY47	Os07g0680400	LOC_Os07g48260	stress	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.	A transcriptomic analysis of the drought response of transgenic rice plants expressing P SARK ::IPT, validated by qPCR, indicated that OsWRKY47 expression was induced under drought stress in P SARK ::IPT plants
OsWRKY47	Os07g0680400	LOC_Os07g48260	drought stress	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.	A transcriptomic analysis of the drought response of transgenic rice plants expressing P SARK ::IPT, validated by qPCR, indicated that OsWRKY47 expression was induced under drought stress in P SARK ::IPT plants
OsWRKY47	Os07g0680400	LOC_Os07g48260	drought stress	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.	A transcriptomic analysis of the drought response of transgenic rice plants expressing P SARK ::IPT, validated by qPCR, indicated that OsWRKY47 expression was induced under drought stress in P SARK ::IPT plants
OsWRKY47	Os07g0680400	LOC_Os07g48260	transcriptional regulator	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance	In the first transcriptional regulatory cascade, OsWRKY47 acted downstream of OsWRKY10 whereas OsWRKY51 acted upstream
OsWRKY47	Os07g0680400	LOC_Os07g48260	transcriptional regulator	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance	In the second transcriptional regulatory cascade, OsWRKY47 acted downstream of OsWRKY10, and OsWRKY88 acted upstream
OsWRKY5	Os05g0137500	LOC_Os05g04640	leaf	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
OsWRKY5	Os05g0137500	LOC_Os05g04640	leaf	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Reverse-transcription quantitative PCR (RT-qPCR) showed that OsWRKY5 upregulates the expression of genes controlling chlorophyll degradation and leaf senescence
OsWRKY5	Os05g0137500	LOC_Os05g04640	leaf	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Taken together, OsWRKY5 is a positive regulator of leaf senescence that upregulates senescence-induced NAC, ABA biosynthesis, and chlorophyll degradation genes
OsWRKY5	Os05g0137500	LOC_Os05g04640	leaf senescence	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
OsWRKY5	Os05g0137500	LOC_Os05g04640	leaf senescence	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Reverse-transcription quantitative PCR (RT-qPCR) showed that OsWRKY5 upregulates the expression of genes controlling chlorophyll degradation and leaf senescence
OsWRKY5	Os05g0137500	LOC_Os05g04640	leaf senescence	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Taken together, OsWRKY5 is a positive regulator of leaf senescence that upregulates senescence-induced NAC, ABA biosynthesis, and chlorophyll degradation genes
OsWRKY5	Os05g0137500	LOC_Os05g04640	senescence	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
OsWRKY5	Os05g0137500	LOC_Os05g04640	senescence	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Reverse-transcription quantitative PCR (RT-qPCR) showed that OsWRKY5 upregulates the expression of genes controlling chlorophyll degradation and leaf senescence
OsWRKY5	Os05g0137500	LOC_Os05g04640	senescence	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Taken together, OsWRKY5 is a positive regulator of leaf senescence that upregulates senescence-induced NAC, ABA biosynthesis, and chlorophyll degradation genes
OsWRKY5	Os05g0137500	LOC_Os05g04640	ABA	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Furthermore, OsWRKY5 expression was suppressed by ABA treatment
OsWRKY5	Os05g0137500	LOC_Os05g04640	ABA	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Taken together, OsWRKY5 is a positive regulator of leaf senescence that upregulates senescence-induced NAC, ABA biosynthesis, and chlorophyll degradation genes
OsWRKY5	Os05g0137500	LOC_Os05g04640	abscisic acid	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
OsWRKY5	Os05g0137500	LOC_Os05g04640	ABA	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Furthermore, OsWRKY5 expression was suppressed by ABA treatment
OsWRKY5	Os05g0137500	LOC_Os05g04640	ABA	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Taken together, OsWRKY5 is a positive regulator of leaf senescence that upregulates senescence-induced NAC, ABA biosynthesis, and chlorophyll degradation genes
OsWRKY5	Os05g0137500	LOC_Os05g04640	ABA biosynthesis	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Taken together, OsWRKY5 is a positive regulator of leaf senescence that upregulates senescence-induced NAC, ABA biosynthesis, and chlorophyll degradation genes
OsWRKY5	Os05g0137500	LOC_Os05g04640	abscisic acid biosynthesis	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	OsWRKY5 Promotes Rice Leaf Senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	transcription factor	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	In this study, we identified and characterized a WRKY transcription factor in rice, OsWRKY50
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	growth	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	seedling	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	seedling	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	seed	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	seed	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	salt	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	salt	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	The transcription of OsWRKY50 was repressed under salt stress conditions, but activated after abscisic acid (ABA) treatment
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	salt	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	seed germination	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	seed germination	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	salt stress	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	salt stress	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	The transcription of OsWRKY50 was repressed under salt stress conditions, but activated after abscisic acid (ABA) treatment
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	salt stress	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	stress	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	stress	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	The transcription of OsWRKY50 was repressed under salt stress conditions, but activated after abscisic acid (ABA) treatment
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	stress	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	nucleus	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	OsWRKY50 functions as a transcriptional repressor in the nucleus
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	abscisic acid	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	The transcription of OsWRKY50 was repressed under salt stress conditions, but activated after abscisic acid (ABA) treatment
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	stress tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	stress tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	seedling growth	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance
OsWRKY50	Os11g0117550|Os11g0117600	LOC_Os11g02540	seedling growth	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance	Taken together, our results demonstrate that rice transcription repressor OsWRKY50 mediates ABA-dependent seed germination and seedling growth and enhances salt stress tolerance via an ABA-independent pathway
OsWRKY51	Os04g0287400	LOC_Os04g21950	ga	Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells	To address the cross-talk of GA and ABA signaling, we studied two rice WRKY genes (OsWRKY51 and OsWRKY71) that are ABA-inducible and GA-repressible in embryos and aleurone cells
OsWRKY51	Os04g0287400	LOC_Os04g21950	ga	Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells	In contrast, the third non-DNA-binding mutant enhances GA induction of Amy32b-GUS, by interfering with the binding of the wild-type OsWRKY71 or the OsWRKY71/OsWRKY51 repressing complex
OsWRKY51	Os04g0287400	LOC_Os04g21950	ABA	Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells	To address the cross-talk of GA and ABA signaling, we studied two rice WRKY genes (OsWRKY51 and OsWRKY71) that are ABA-inducible and GA-repressible in embryos and aleurone cells
OsWRKY51	Os04g0287400	LOC_Os04g21950	growth	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	Transgenic lines overexpressing OsWRKY51 showed growth retardation compared to WT plants
OsWRKY51	Os04g0287400	LOC_Os04g21950	defense	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	OsWRKY51 functions as a positive transcriptional regulator in defense signaling against Xanthomonas oryzae pv
OsWRKY51	Os04g0287400	LOC_Os04g21950	defense	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	To examine the role of OsWRKY51 in the defense response of rice, we generated OsWRKY51 overexpressing and underexpressing transgenic rice plants
OsWRKY51	Os04g0287400	LOC_Os04g21950	defense	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	Based on these results, we suggest that OsWRKY51 is a positive transcriptional regulator of defense signaling and has direct DNA binding ability to the promoter of OsPR10a, although it is reported to be a negative regulator in GA signaling
OsWRKY51	Os04g0287400	LOC_Os04g21950	defense response	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	To examine the role of OsWRKY51 in the defense response of rice, we generated OsWRKY51 overexpressing and underexpressing transgenic rice plants
OsWRKY51	Os04g0287400	LOC_Os04g21950	ga	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	Based on these results, we suggest that OsWRKY51 is a positive transcriptional regulator of defense signaling and has direct DNA binding ability to the promoter of OsPR10a, although it is reported to be a negative regulator in GA signaling
OsWRKY51	Os04g0287400	LOC_Os04g21950	height	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	In contrast, transgenic lines underexpressing OsWRKY51 by RNA interference showed similar plant height with WT plants
OsWRKY51	Os04g0287400	LOC_Os04g21950	plant height	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	In contrast, transgenic lines underexpressing OsWRKY51 by RNA interference showed similar plant height with WT plants
OsWRKY51	Os04g0287400	LOC_Os04g21950	nucleus	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	Transient expression of OsWRKY51-green fluorescent protein fusion protein in rice protoplasts revealed that OsWRKY51 was localized in the nucleus
OsWRKY51	Os04g0287400	LOC_Os04g21950	GA	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	Based on these results, we suggest that OsWRKY51 is a positive transcriptional regulator of defense signaling and has direct DNA binding ability to the promoter of OsPR10a, although it is reported to be a negative regulator in GA signaling
OsWRKY51	Os04g0287400	LOC_Os04g21950	transcriptional regulator	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	OsWRKY51 functions as a positive transcriptional regulator in defense signaling against Xanthomonas oryzae pv
OsWRKY51	Os04g0287400	LOC_Os04g21950	transcriptional regulator	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	Based on these results, we suggest that OsWRKY51 is a positive transcriptional regulator of defense signaling and has direct DNA binding ability to the promoter of OsPR10a, although it is reported to be a negative regulator in GA signaling
OsWRKY51	Os04g0287400	LOC_Os04g21950	transcriptional regulator	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance	In the first transcriptional regulatory cascade, OsWRKY47 acted downstream of OsWRKY10 whereas OsWRKY51 acted upstream
OsWRKY51	Os04g0287400	LOC_Os04g21950	transcription factor	IPA1 Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and WRKY Pathways	Using transient dual-luciferase and yeast one-hybrid assays, IPA1 was found to directly activate the expression of OsWRKY51 and OsWRKY71, which would interfere with the binding affinity of GA-induced transcription factor OsGAMYB to inhibit the expression of amylase genes
OsWRKY53	Os05g0343400	LOC_Os05g27730	defense	Promoter Analysis of the Elicitor-Induced WRKY GeneOsWRKY53, Which Is Involved in Defense Responses in Rice	OsWRKY53, a chitin oligosaccharide elicitor-responsive rice WRKY gene, has been found to be involved in defense responses in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	defense	Promoter Analysis of the Elicitor-Induced WRKY GeneOsWRKY53, Which Is Involved in Defense Responses in Rice	Promoter Analysis of the Elicitor-Induced WRKY GeneOsWRKY53, Which Is Involved in Defense Responses in Rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	transcription factor	Promoter Analysis of the Elicitor-Induced WRKY GeneOsWRKY53, Which Is Involved in Defense Responses in Rice	We identified three tandem W-box elements, putative recognition sites for WRKY transcription factors, as cis elements that are essential to the elicitor-responsiveness of OsWRKY53 by deletion and mutation analysis of the promoter by dual luciferase assay
OsWRKY53	Os05g0343400	LOC_Os05g27730	defense response	Promoter Analysis of the Elicitor-Induced WRKY GeneOsWRKY53, Which Is Involved in Defense Responses in Rice	OsWRKY53, a chitin oligosaccharide elicitor-responsive rice WRKY gene, has been found to be involved in defense responses in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	defense response	Promoter Analysis of the Elicitor-Induced WRKY GeneOsWRKY53, Which Is Involved in Defense Responses in Rice	Promoter Analysis of the Elicitor-Induced WRKY GeneOsWRKY53, Which Is Involved in Defense Responses in Rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	blast	Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice	OsWRKY53 was also induced in suspension-cultured rice cells by a fungal cerebroside elicitor and in rice plants by infection with the blast fungus Magnaporthe grisea
OsWRKY53	Os05g0343400	LOC_Os05g27730	defense	Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice	A microarray analysis revealed that several defense-related genes, including pathogenesis-related protein genes such as PBZ1, were upregulated in rice cells overexpressing OsWRKY53
OsWRKY53	Os05g0343400	LOC_Os05g27730	defense	Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice	These results strongly suggest that OsWRKY53 is a transcription factor that plays important roles in elicitor-induced defense signaling pathways in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	defense	Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice	Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	transcription factor	Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice	These results strongly suggest that OsWRKY53 is a transcription factor that plays important roles in elicitor-induced defense signaling pathways in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	wounding response	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	biotic stress	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice	Taken together, components involving in the wounding signaling pathway, OsMKK4-OsMPK1-OsWRKY53, can be important players in regulating crosstalk between abiotic stress and biotic stress.
OsWRKY53	Os05g0343400	LOC_Os05g27730	growth	The rice transcription factor WRKY53 suppresses herbivore-induced defenses by acting as a negative feedback modulator of map kinase activity.	OsWRKY53 is also shown to be a negative regulator of plant growth
OsWRKY53	Os05g0343400	LOC_Os05g27730	jasmonic	The rice transcription factor WRKY53 suppresses herbivore-induced defenses by acting as a negative feedback modulator of map kinase activity.	The transcript levels of OsWRKY53 are independent of endogenous jasmonic acid (JA), but positively regulated by the mitogen-activated protein kinases (MPKs), OsMPK3/OsMPK6
OsWRKY53	Os05g0343400	LOC_Os05g27730	jasmonic acid	The rice transcription factor WRKY53 suppresses herbivore-induced defenses by acting as a negative feedback modulator of map kinase activity.	The transcript levels of OsWRKY53 are independent of endogenous jasmonic acid (JA), but positively regulated by the mitogen-activated protein kinases (MPKs), OsMPK3/OsMPK6
OsWRKY53	Os05g0343400	LOC_Os05g27730	plant growth	The rice transcription factor WRKY53 suppresses herbivore-induced defenses by acting as a negative feedback modulator of map kinase activity.	OsWRKY53 is also shown to be a negative regulator of plant growth
OsWRKY53	Os05g0343400	LOC_Os05g27730	protein kinase	The rice transcription factor WRKY53 suppresses herbivore-induced defenses by acting as a negative feedback modulator of map kinase activity.	The transcript levels of OsWRKY53 are independent of endogenous jasmonic acid (JA), but positively regulated by the mitogen-activated protein kinases (MPKs), OsMPK3/OsMPK6
OsWRKY53	Os05g0343400	LOC_Os05g27730	stem	OsWRKY53, a versatile switch in regulating herbivore-induced defense responses in rice.	Recently, a rice WRKY transcription factor OsWRKY53 has been reported to function as a negative feedback modulator of OsMPK3/OsMPK6 and thereby to control the size of the investment a rice plant makes to defend against a chewing herbivore, the striped stem borer Chilo suppressalis
OsWRKY53	Os05g0343400	LOC_Os05g27730	transcription factor	OsWRKY53, a versatile switch in regulating herbivore-induced defense responses in rice.	Recently, a rice WRKY transcription factor OsWRKY53 has been reported to function as a negative feedback modulator of OsMPK3/OsMPK6 and thereby to control the size of the investment a rice plant makes to defend against a chewing herbivore, the striped stem borer Chilo suppressalis
OsWRKY53	Os05g0343400	LOC_Os05g27730	ethylene	OsWRKY53, a versatile switch in regulating herbivore-induced defense responses in rice.	We investigated the performance of a piecing-sucking herbivore, the brown planthopper (BPH) Nilaparvata lugens, on transgenic plants that silence or overexpress OsWRKY53, and found that OsWRKY53 activates rice defenses against BPH by activating an H2O2 burst and suppressing ethylene biosynthesis
OsWRKY53	Os05g0343400	LOC_Os05g27730	brown planthopper	OsWRKY53, a versatile switch in regulating herbivore-induced defense responses in rice.	We investigated the performance of a piecing-sucking herbivore, the brown planthopper (BPH) Nilaparvata lugens, on transgenic plants that silence or overexpress OsWRKY53, and found that OsWRKY53 activates rice defenses against BPH by activating an H2O2 burst and suppressing ethylene biosynthesis
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 Phenotypic analyses showed that OsWRKY53 overexpression led to enlarged leaf angles and increased grain size, in contrast to the erect leaves and smaller seeds in oswrky53 mutant
OsWRKY53	Os05g0343400	LOC_Os05g27730	transcription factor	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.
OsWRKY53	Os05g0343400	LOC_Os05g27730	grain	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 Phenotypic analyses showed that OsWRKY53 overexpression led to enlarged leaf angles and increased grain size, in contrast to the erect leaves and smaller seeds in oswrky53 mutant
OsWRKY53	Os05g0343400	LOC_Os05g27730	grain size	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 Phenotypic analyses showed that OsWRKY53 overexpression led to enlarged leaf angles and increased grain size, in contrast to the erect leaves and smaller seeds in oswrky53 mutant
OsWRKY53	Os05g0343400	LOC_Os05g27730	brassinosteroid	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.
OsWRKY53	Os05g0343400	LOC_Os05g27730	 BR 	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 In addition, the oswrky53 exhibited decreased BR sensitivity, whereas OsWRKY53 overexpression plants were hypersensitive to BR, suggesting that OsWRKY53 positively regulates rice BR signaling
OsWRKY53	Os05g0343400	LOC_Os05g27730	 BR 	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 Moreover, we show that OsWRKY53 can interact with and be phosphorylated by OsMAPKK4-OsMAPK6 cascade, and the phosphorylation is required for the biological function of OsWRKY53 in regulating BR responses
OsWRKY53	Os05g0343400	LOC_Os05g27730	 BR 	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 Furthermore, we found that BR promotes OsWRKY53 protein accumulation but represses OsWRKY53 transcript level
OsWRKY53	Os05g0343400	LOC_Os05g27730	 BR 	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 Taken together, this study revealed the novel role of OsWRKY53 as a regulator of rice BR signaling, and also suggested a potential role of OsWRKY53 in mediating the crosstalk between the hormone and other signaling pathways
OsWRKY53	Os05g0343400	LOC_Os05g27730	Brassinosteroid	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.
OsWRKY53	Os05g0343400	LOC_Os05g27730	BR signaling	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 In addition, the oswrky53 exhibited decreased BR sensitivity, whereas OsWRKY53 overexpression plants were hypersensitive to BR, suggesting that OsWRKY53 positively regulates rice BR signaling
OsWRKY53	Os05g0343400	LOC_Os05g27730	BR signaling	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 Taken together, this study revealed the novel role of OsWRKY53 as a regulator of rice BR signaling, and also suggested a potential role of OsWRKY53 in mediating the crosstalk between the hormone and other signaling pathways
OsWRKY53	Os05g0343400	LOC_Os05g27730	erect	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	 Phenotypic analyses showed that OsWRKY53 overexpression led to enlarged leaf angles and increased grain size, in contrast to the erect leaves and smaller seeds in oswrky53 mutant
OsWRKY53	Os05g0343400	LOC_Os05g27730	Brassinosteroid Signaling	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.
OsWRKY53	Os05g0343400	LOC_Os05g27730	plant architecture	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.	Transcription factor OsWRKY53 positively regulates brassinosteroid signaling and plant architecture.
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf	Knock out of transcription factor WRKY53 thickens sclerenchyma cell walls, confers bacterial blight resistance	 Both OsWRKY53 and OsMYB63 are abundantly expressed in sclerenchyma cells of leaf vascular bundles
OsWRKY53	Os05g0343400	LOC_Os05g27730	vascular bundle	Knock out of transcription factor WRKY53 thickens sclerenchyma cell walls, confers bacterial blight resistance	 Both OsWRKY53 and OsMYB63 are abundantly expressed in sclerenchyma cells of leaf vascular bundles
OsWRKY53	Os05g0343400	LOC_Os05g27730	resistance	Knock out of transcription factor WRKY53 thickens sclerenchyma cell walls, confers bacterial blight resistance	 The OsWRKY53-overexpressing and OsMYB63 knockout plants had thinner sclerenchyma cell walls, showing susceptibility to Xoo, while the OsWRKY53 knockout and OsMYB63-overexpressing plants had thicker sclerenchyma cell walls, exhibiting resistance to Xoo
OsWRKY53	Os05g0343400	LOC_Os05g27730	cell wall	Knock out of transcription factor WRKY53 thickens sclerenchyma cell walls, confers bacterial blight resistance	 The OsWRKY53-overexpressing and OsMYB63 knockout plants had thinner sclerenchyma cell walls, showing susceptibility to Xoo, while the OsWRKY53 knockout and OsMYB63-overexpressing plants had thicker sclerenchyma cell walls, exhibiting resistance to Xoo
OsWRKY53	Os05g0343400	LOC_Os05g27730	ethylene	Silencing a Simple Extracellular Leucine-Rich Repeat Gene OsI-BAK1 Enhances the Resistance of Rice to Brown Planthopper Nilaparvata lugens.	 Silencing OsI-BAK1 (ir-ibak1) in rice enhanced the BPH-induced transcript levels of three defense-related WRKY genes (OsWRKY24, OsWRKY53 and OsWRKY70) but decreased the induced levels of ethylene
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 In this study, we showed that OsWRKY53 is a positive regulator of leaf senescence and a negative regulator of seed germination in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Chromatin immunoprecipitation and protoplast transient assays revealed that OsWRKY53 directly bound to the promoters of OsABA8ox1 and OsABA8ox2 to repress their transcription, resulting in elevated endogenous ABA contents that promoted premature leaf senescence in the OsWRKY53-oe plants
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 It indicates that OsWRKY53 is a positive regulator through regulating ABA accumulation to promote leaf senescence
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Taken together, OsWRKY53 suppresses the transcript of ABA catabolic genes to promote ABA accumulation to modulate ABA-induced leaf senescence and ABA-mediated inhibition of seed germination
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 In this study, we showed that OsWRKY53 is a positive regulator of leaf senescence and a negative regulator of seed germination in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Chromatin immunoprecipitation and protoplast transient assays revealed that OsWRKY53 directly bound to the promoters of OsABA8ox1 and OsABA8ox2 to repress their transcription, resulting in elevated endogenous ABA contents that promoted premature leaf senescence in the OsWRKY53-oe plants
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 It indicates that OsWRKY53 is a positive regulator through regulating ABA accumulation to promote leaf senescence
OsWRKY53	Os05g0343400	LOC_Os05g27730	leaf senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Taken together, OsWRKY53 suppresses the transcript of ABA catabolic genes to promote ABA accumulation to modulate ABA-induced leaf senescence and ABA-mediated inhibition of seed germination
OsWRKY53	Os05g0343400	LOC_Os05g27730	senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.
OsWRKY53	Os05g0343400	LOC_Os05g27730	senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 In this study, we showed that OsWRKY53 is a positive regulator of leaf senescence and a negative regulator of seed germination in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 The OsWRKY53-overexpressing (OsWRKY53-oe) plants showed early yellowing leaves, while the OsWRKY53 (oswrky53) knockout mutants maintained green leaves than the wild type under natural, dark-induced, and ABA-induced senescence conditions
OsWRKY53	Os05g0343400	LOC_Os05g27730	senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Chromatin immunoprecipitation and protoplast transient assays revealed that OsWRKY53 directly bound to the promoters of OsABA8ox1 and OsABA8ox2 to repress their transcription, resulting in elevated endogenous ABA contents that promoted premature leaf senescence in the OsWRKY53-oe plants
OsWRKY53	Os05g0343400	LOC_Os05g27730	senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 It indicates that OsWRKY53 is a positive regulator through regulating ABA accumulation to promote leaf senescence
OsWRKY53	Os05g0343400	LOC_Os05g27730	senescence	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Taken together, OsWRKY53 suppresses the transcript of ABA catabolic genes to promote ABA accumulation to modulate ABA-induced leaf senescence and ABA-mediated inhibition of seed germination
OsWRKY53	Os05g0343400	LOC_Os05g27730	seed	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.
OsWRKY53	Os05g0343400	LOC_Os05g27730	seed	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 In this study, we showed that OsWRKY53 is a positive regulator of leaf senescence and a negative regulator of seed germination in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	seed	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Taken together, OsWRKY53 suppresses the transcript of ABA catabolic genes to promote ABA accumulation to modulate ABA-induced leaf senescence and ABA-mediated inhibition of seed germination
OsWRKY53	Os05g0343400	LOC_Os05g27730	seed germination	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.
OsWRKY53	Os05g0343400	LOC_Os05g27730	seed germination	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 In this study, we showed that OsWRKY53 is a positive regulator of leaf senescence and a negative regulator of seed germination in rice
OsWRKY53	Os05g0343400	LOC_Os05g27730	seed germination	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Taken together, OsWRKY53 suppresses the transcript of ABA catabolic genes to promote ABA accumulation to modulate ABA-induced leaf senescence and ABA-mediated inhibition of seed germination
OsWRKY53	Os05g0343400	LOC_Os05g27730	ABA	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 OsWRKY53 expression was induced in leaves under aging, dark, and ABA treatment
OsWRKY53	Os05g0343400	LOC_Os05g27730	ABA	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Chromatin immunoprecipitation and protoplast transient assays revealed that OsWRKY53 directly bound to the promoters of OsABA8ox1 and OsABA8ox2 to repress their transcription, resulting in elevated endogenous ABA contents that promoted premature leaf senescence in the OsWRKY53-oe plants
OsWRKY53	Os05g0343400	LOC_Os05g27730	ABA	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 It indicates that OsWRKY53 is a positive regulator through regulating ABA accumulation to promote leaf senescence
OsWRKY53	Os05g0343400	LOC_Os05g27730	ABA	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Taken together, OsWRKY53 suppresses the transcript of ABA catabolic genes to promote ABA accumulation to modulate ABA-induced leaf senescence and ABA-mediated inhibition of seed germination
OsWRKY53	Os05g0343400	LOC_Os05g27730	abscisic acid	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.
OsWRKY53	Os05g0343400	LOC_Os05g27730	 ABA 	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 OsWRKY53 expression was induced in leaves under aging, dark, and ABA treatment
OsWRKY53	Os05g0343400	LOC_Os05g27730	 ABA 	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Chromatin immunoprecipitation and protoplast transient assays revealed that OsWRKY53 directly bound to the promoters of OsABA8ox1 and OsABA8ox2 to repress their transcription, resulting in elevated endogenous ABA contents that promoted premature leaf senescence in the OsWRKY53-oe plants
OsWRKY53	Os05g0343400	LOC_Os05g27730	 ABA 	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 It indicates that OsWRKY53 is a positive regulator through regulating ABA accumulation to promote leaf senescence
OsWRKY53	Os05g0343400	LOC_Os05g27730	 ABA 	OsWRKY53 Promotes Abscisic Acid Accumulation to Accelerate Leaf Senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	 Taken together, OsWRKY53 suppresses the transcript of ABA catabolic genes to promote ABA accumulation to modulate ABA-induced leaf senescence and ABA-mediated inhibition of seed germination
OsWRKY54	Os05g0478800	LOC_Os05g40080	transcription factor	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.
OsWRKY54	Os05g0478800	LOC_Os05g40080	transcription factor	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 This study reports the need for an uncharacterized WRKY transcription factor OsWRKY54 for rice salt-tolerance
OsWRKY54	Os05g0478800	LOC_Os05g40080	stress	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 Salt stress resulted in a rapid induction of OsWRKY54 expression in roots
OsWRKY54	Os05g0478800	LOC_Os05g40080	stress	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 The loss of OsWRKY54 resulted in greater Na accumulation in shoots and enhanced sensitivity of rice plants to salt stress
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 Salt stress resulted in a rapid induction of OsWRKY54 expression in roots
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 The loss of OsWRKY54 resulted in greater Na accumulation in shoots and enhanced sensitivity of rice plants to salt stress
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 The real-time quantitative PCR (qRT-PCR) and transcriptome analysis revealed that OsWRKY54 regulated the expression of some essential genes related to salt tolerance, such as OsNHX4 and OsHKT1;5
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 Thus, these results indicated that OsWRKY54 was a critical regulatory factor in salt tolerance in rice
OsWRKY54	Os05g0478800	LOC_Os05g40080	tolerance	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.
OsWRKY54	Os05g0478800	LOC_Os05g40080	tolerance	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 Thus, these results indicated that OsWRKY54 was a critical regulatory factor in salt tolerance in rice
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt tolerance	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt tolerance	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 The real-time quantitative PCR (qRT-PCR) and transcriptome analysis revealed that OsWRKY54 regulated the expression of some essential genes related to salt tolerance, such as OsNHX4 and OsHKT1;5
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt tolerance	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 Thus, these results indicated that OsWRKY54 was a critical regulatory factor in salt tolerance in rice
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt stress	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 Salt stress resulted in a rapid induction of OsWRKY54 expression in roots
OsWRKY54	Os05g0478800	LOC_Os05g40080	salt stress	The WRKY Transcription Factor OsWRKY54 Is Involved in Salt Tolerance in Rice.	 The loss of OsWRKY54 resulted in greater Na accumulation in shoots and enhanced sensitivity of rice plants to salt stress
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	transcription factor	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	growth	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	resistance	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 In this study, we found that transgenic rice lines overexpressing OsWRKY55 (OsWRKY55-OE) exhibited reduced drought resistance
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	drought	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	drought	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 In this study, we found that transgenic rice lines overexpressing OsWRKY55 (OsWRKY55-OE) exhibited reduced drought resistance
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	drought	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 OsWRKY55 was expressed in various tissues and was induced by drought and abscisic acid (ABA) treatments
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	drought	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 These results suggest that OsWRKY55 plays a critical role in responses to drought stress and the regulation of plant height in rice, further providing valuable information for crop improvement
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	stress	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 These results suggest that OsWRKY55 plays a critical role in responses to drought stress and the regulation of plant height in rice, further providing valuable information for crop improvement
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	plant growth	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	abscisic acid	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 OsWRKY55 was expressed in various tissues and was induced by drought and abscisic acid (ABA) treatments
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	height	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 Furthermore, OsWRKY55 was able to reduce plant height under normal conditions by decreasing the cell size
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	height	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 These results suggest that OsWRKY55 plays a critical role in responses to drought stress and the regulation of plant height in rice, further providing valuable information for crop improvement
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	plant height	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 Furthermore, OsWRKY55 was able to reduce plant height under normal conditions by decreasing the cell size
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	plant height	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 These results suggest that OsWRKY55 plays a critical role in responses to drought stress and the regulation of plant height in rice, further providing valuable information for crop improvement
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	protein kinase	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 Through yeast two-hybrid assays, we found that OsWRKY55 interacted with four mitogen-activated protein kinases (MAPKs) that could be induced by drought, including OsMPK7, OsMPK9, OsMPK20-1, and OsMPK20-4
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	drought stress	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 These results suggest that OsWRKY55 plays a critical role in responses to drought stress and the regulation of plant height in rice, further providing valuable information for crop improvement
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	drought resistance	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 In this study, we found that transgenic rice lines overexpressing OsWRKY55 (OsWRKY55-OE) exhibited reduced drought resistance
OsWRKY55|WRKY55a|WRKY55b|OsWRKY31	Os03g0321700	LOC_Os03g20550	drought stress 	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth 	 These results suggest that OsWRKY55 plays a critical role in responses to drought stress and the regulation of plant height in rice, further providing valuable information for crop improvement
OsWRKY6	Os03g0798500	LOC_Os03g58420	disease	Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens	Heterologous expression of OsWRKY6 enhanced disease resistance to pathogen
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense response	Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens	All together, OsWRKY6 functions as a positive transcriptional regulator of the plant defense response
OsWRKY6	Os03g0798500	LOC_Os03g58420	disease resistance	Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens	Heterologous expression of OsWRKY6 enhanced disease resistance to pathogen
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens	Defense-related genes were constitutively expressed in Arabidopsis transgenic lines overexpressing OsWRKY6
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens	All together, OsWRKY6 functions as a positive transcriptional regulator of the plant defense response
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens	Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens
OsWRKY6	Os03g0798500	LOC_Os03g58420	leaf	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	OsWRKY6-ox lines displayed leaf lesions, and increased OsWRKY6 levels caused cell death
OsWRKY6	Os03g0798500	LOC_Os03g58420	resistance	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	Several pathogenesis-related (PR) genes were constitutively activated, including OsPR10a, and transgenic rice (Oryza sativa) plants overexpressing (ox) OsWRKY6 exhibited enhanced disease resistance to pathogens
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	By contrast, PR gene induction was compromised in transgenic OsWRKY6-RNAi lines, suggesting that OsWRKY6 is a positive regulator of defense responses
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	Our results suggest that OsWRKY6 positively regulates defense responses through activation of OsICS1 expression and OsWRKY6 stabilization
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense response	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	By contrast, PR gene induction was compromised in transgenic OsWRKY6-RNAi lines, suggesting that OsWRKY6 is a positive regulator of defense responses
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense response	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	Our results suggest that OsWRKY6 positively regulates defense responses through activation of OsICS1 expression and OsWRKY6 stabilization
OsWRKY6	Os03g0798500	LOC_Os03g58420	disease	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	Several pathogenesis-related (PR) genes were constitutively activated, including OsPR10a, and transgenic rice (Oryza sativa) plants overexpressing (ox) OsWRKY6 exhibited enhanced disease resistance to pathogens
OsWRKY6	Os03g0798500	LOC_Os03g58420	disease resistance	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	Several pathogenesis-related (PR) genes were constitutively activated, including OsPR10a, and transgenic rice (Oryza sativa) plants overexpressing (ox) OsWRKY6 exhibited enhanced disease resistance to pathogens
OsWRKY6	Os03g0798500	LOC_Os03g58420	cell death	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	OsWRKY6-ox lines displayed leaf lesions, and increased OsWRKY6 levels caused cell death
OsWRKY6	Os03g0798500	LOC_Os03g58420	 sa 	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	This indicates that OsWRKY6 can directly regulate OsICS1 expression and thereby increase SA concentrations
OsWRKY6	Os03g0798500	LOC_Os03g58420	SA	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	This indicates that OsWRKY6 can directly regulate OsICS1 expression and thereby increase SA concentrations
OsWRKY6	Os03g0798500	LOC_Os03g58420	transcription factor	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 OsWRKY transcription factors are involved in various biotic stress responses in rice, and OsWRKY6 specifically acts as an important defense regulator against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	resistance	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 However, the relationship between OsWRKY6 and other OsWRKYs, as well as its role in resistance (R) gene-mediated defense, have yet to be studied in depth
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	The rice protein OsWRKY6 directly activates OsWRKY45 and OsWRKY47 expression, and also activates OsPR1a and OsPR1b through the two OsWRKYs, and this transcriptional module participates in Xa1-mediated defense against the pathogen Xanthomonas oryzae pv
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 OsWRKY transcription factors are involved in various biotic stress responses in rice, and OsWRKY6 specifically acts as an important defense regulator against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 Here, we characterized a transcriptional cascade triggered by OsWRKY6 that regulated defense against Xoo infection mediated by the NBS-LRR protein Xa1
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 Two OsWRKY6 RNAi knockdown lines showed significantly reduced defense even against an incompatible Xoo infection, and the expression of OsWRKY6 was not regulated by OsWRKY51 and OsWRKY88
OsWRKY6	Os03g0798500	LOC_Os03g58420	defense	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 This study reveals that a novel downstream transcriptional pathway activated by OsWRKY6 is involved in Xa1-mediated defense against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	stress	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 OsWRKY transcription factors are involved in various biotic stress responses in rice, and OsWRKY6 specifically acts as an important defense regulator against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	R protein	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 Here, we characterized a transcriptional cascade triggered by OsWRKY6 that regulated defense against Xoo infection mediated by the NBS-LRR protein Xa1
OsWRKY6	Os03g0798500	LOC_Os03g58420	pathogen	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	The rice protein OsWRKY6 directly activates OsWRKY45 and OsWRKY47 expression, and also activates OsPR1a and OsPR1b through the two OsWRKYs, and this transcriptional module participates in Xa1-mediated defense against the pathogen Xanthomonas oryzae pv
OsWRKY6	Os03g0798500	LOC_Os03g58420	biotic stress	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 OsWRKY transcription factors are involved in various biotic stress responses in rice, and OsWRKY6 specifically acts as an important defense regulator against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	xoo	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 OsWRKY transcription factors are involved in various biotic stress responses in rice, and OsWRKY6 specifically acts as an important defense regulator against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	xoo	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 Here, we characterized a transcriptional cascade triggered by OsWRKY6 that regulated defense against Xoo infection mediated by the NBS-LRR protein Xa1
OsWRKY6	Os03g0798500	LOC_Os03g58420	xoo	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 Two OsWRKY6 RNAi knockdown lines showed significantly reduced defense even against an incompatible Xoo infection, and the expression of OsWRKY6 was not regulated by OsWRKY51 and OsWRKY88
OsWRKY6	Os03g0798500	LOC_Os03g58420	xoo	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 This study reveals that a novel downstream transcriptional pathway activated by OsWRKY6 is involved in Xa1-mediated defense against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	stress response	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 OsWRKY transcription factors are involved in various biotic stress responses in rice, and OsWRKY6 specifically acts as an important defense regulator against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	Xoo	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 OsWRKY transcription factors are involved in various biotic stress responses in rice, and OsWRKY6 specifically acts as an important defense regulator against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	Xoo	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 Here, we characterized a transcriptional cascade triggered by OsWRKY6 that regulated defense against Xoo infection mediated by the NBS-LRR protein Xa1
OsWRKY6	Os03g0798500	LOC_Os03g58420	Xoo	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 Two OsWRKY6 RNAi knockdown lines showed significantly reduced defense even against an incompatible Xoo infection, and the expression of OsWRKY6 was not regulated by OsWRKY51 and OsWRKY88
OsWRKY6	Os03g0798500	LOC_Os03g58420	Xoo	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 This study reveals that a novel downstream transcriptional pathway activated by OsWRKY6 is involved in Xa1-mediated defense against Xoo
OsWRKY6	Os03g0798500	LOC_Os03g58420	 xoo 	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 Here, we characterized a transcriptional cascade triggered by OsWRKY6 that regulated defense against Xoo infection mediated by the NBS-LRR protein Xa1
OsWRKY6	Os03g0798500	LOC_Os03g58420	 xoo 	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	 Two OsWRKY6 RNAi knockdown lines showed significantly reduced defense even against an incompatible Xoo infection, and the expression of OsWRKY6 was not regulated by OsWRKY51 and OsWRKY88
OsWRKY62	Os09g0417800	LOC_Os09g25070	transcription factor	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	The expression analyses of the group IIa WRKY transcription factors in rice revealed that OsWRKY28, together with OsWRKY71, exhibit an early-induced expression prior to the late-induced expressions of OsWRKY62 and OsWRKY76
OsWRKY62	Os09g0417800	LOC_Os09g25070	transcription factor	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice	Here, we report that XA21 binds to a WRKY transcription factor, called OsWRKY62
OsWRKY62	Os09g0417800	LOC_Os09g25070	defense	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice	These results imply that OsWRKY62 functions as a negative regulator of innate immunity in rice, and serves as a critical mediator of both basal and race-specific defense responses
OsWRKY62	Os09g0417800	LOC_Os09g25070	defense	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice
OsWRKY62	Os09g0417800	LOC_Os09g25070	defense response	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice	These results imply that OsWRKY62 functions as a negative regulator of innate immunity in rice, and serves as a critical mediator of both basal and race-specific defense responses
OsWRKY62	Os09g0417800	LOC_Os09g25070	resistance	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Metabolomic and transcriptomic approaches were used to dissect the enhanced disease resistance in the plants harbouring a RNA interfering construct of OsWRKY62 and OsWRKY76 (dsOW62/76) genes
OsWRKY62	Os09g0417800	LOC_Os09g25070	defense	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.
OsWRKY62	Os09g0417800	LOC_Os09g25070	disease	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Metabolomic and transcriptomic approaches were used to dissect the enhanced disease resistance in the plants harbouring a RNA interfering construct of OsWRKY62 and OsWRKY76 (dsOW62/76) genes
OsWRKY62	Os09g0417800	LOC_Os09g25070	salicylic acid	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 Salicylic acid (SA) and jasmonic acid (JA)/JA-Ile contents were increased in dsOW62/76 and knockout lines of individual OsWRKY62 and OsWRKY76 genes
OsWRKY62	Os09g0417800	LOC_Os09g25070	disease resistance	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Metabolomic and transcriptomic approaches were used to dissect the enhanced disease resistance in the plants harbouring a RNA interfering construct of OsWRKY62 and OsWRKY76 (dsOW62/76) genes
OsWRKY62	Os09g0417800	LOC_Os09g25070	jasmonic	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 Salicylic acid (SA) and jasmonic acid (JA)/JA-Ile contents were increased in dsOW62/76 and knockout lines of individual OsWRKY62 and OsWRKY76 genes
OsWRKY62	Os09g0417800	LOC_Os09g25070	jasmonic acid	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 Salicylic acid (SA) and jasmonic acid (JA)/JA-Ile contents were increased in dsOW62/76 and knockout lines of individual OsWRKY62 and OsWRKY76 genes
OsWRKY62	Os09g0417800	LOC_Os09g25070	 sa 	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 These results indicate that OsWRKY62 and OsWRKY76 function as negative regulators of biosynthetic defense-related metabolites and provide evidence for an important role of phenylpropanoid pathway in SA production in rice
OsWRKY62	Os09g0417800	LOC_Os09g25070	SA	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 These results indicate that OsWRKY62 and OsWRKY76 function as negative regulators of biosynthetic defense-related metabolites and provide evidence for an important role of phenylpropanoid pathway in SA production in rice
OsWRKY62	Os09g0417800	LOC_Os09g25070	transcription factor	OsWRKY62 and OsWRKY76 Interact with Importin α1s for Negative Regulation of Defensive Responses in Rice Nucleus.	Background OsWRKY62 and OsWRKY76, two close members of WRKY transcription factors, function together as transcriptional repressors
OsWRKY62	Os09g0417800	LOC_Os09g25070	cytosol	OsWRKY62 and OsWRKY76 Interact with Importin α1s for Negative Regulation of Defensive Responses in Rice Nucleus.	 OsWRKY62 is predominantly localized in the cytosol
OsWRKY62	Os09g0417800	LOC_Os09g25070	transcriptional repressor	OsWRKY62 and OsWRKY76 Interact with Importin α1s for Negative Regulation of Defensive Responses in Rice Nucleus.	Background OsWRKY62 and OsWRKY76, two close members of WRKY transcription factors, function together as transcriptional repressors
OsWRKY62	Os09g0417800	LOC_Os09g25070	defense	The ANIP1-OsWRKY62 module regulates both basal defense and Pi9-mediated immunity against Magnaporthe oryzae in rice.	 However, we also observed that OsWRKY62 plays negative roles in defense against a compatible M
OsWRKY62	Os09g0417800	LOC_Os09g25070	immunity	The ANIP1-OsWRKY62 module regulates both basal defense and Pi9-mediated immunity against Magnaporthe oryzae in rice.	 Accordingly, knocking out of OsWRKY62 in a non-Pi9 background decreased immunity against M
OsWRKY62	Os09g0417800	LOC_Os09g25070	immunity	The ANIP1-OsWRKY62 module regulates both basal defense and Pi9-mediated immunity against Magnaporthe oryzae in rice.	 Pi9 binds to ANIP1 and OsWRKY62 to form a complex, which may help to keep Pi9 in an inactive state and weaken rice immunity
OsWRKY63	Os11g0686250	LOC_Os11g45920	salinity	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 was expressed in all rice tissues and was induced under cold stress, dehydration stress, high salinity stress, and ABA treatment
OsWRKY63	Os11g0686250	LOC_Os11g45920	tolerance	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 Thus, our study suggests that OsWRKY63 negatively regulates chilling tolerance in a model of the OsWRKY63-OsWRKY76-OsDREB1B transcriptional regulatory cascade in rice
OsWRKY63	Os11g0686250	LOC_Os11g45920	nucleus	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 localized in the nucleus plays a role as a transcription repressor and downregulates many cold stress-related genes and reactive oxygen species scavenging-related genes
OsWRKY63	Os11g0686250	LOC_Os11g45920	cold stress	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 was expressed in all rice tissues and was induced under cold stress, dehydration stress, high salinity stress, and ABA treatment
OsWRKY63	Os11g0686250	LOC_Os11g45920	cold stress	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 localized in the nucleus plays a role as a transcription repressor and downregulates many cold stress-related genes and reactive oxygen species scavenging-related genes
OsWRKY63	Os11g0686250	LOC_Os11g45920	ABA	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 was expressed in all rice tissues and was induced under cold stress, dehydration stress, high salinity stress, and ABA treatment
OsWRKY63	Os11g0686250	LOC_Os11g45920	cold	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 was expressed in all rice tissues and was induced under cold stress, dehydration stress, high salinity stress, and ABA treatment
OsWRKY63	Os11g0686250	LOC_Os11g45920	cold	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 localized in the nucleus plays a role as a transcription repressor and downregulates many cold stress-related genes and reactive oxygen species scavenging-related genes
OsWRKY63	Os11g0686250	LOC_Os11g45920	salinity stress	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 was expressed in all rice tissues and was induced under cold stress, dehydration stress, high salinity stress, and ABA treatment
OsWRKY63	Os11g0686250	LOC_Os11g45920	chilling	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 Thus, our study suggests that OsWRKY63 negatively regulates chilling tolerance in a model of the OsWRKY63-OsWRKY76-OsDREB1B transcriptional regulatory cascade in rice
OsWRKY63	Os11g0686250	LOC_Os11g45920	transcriptional regulator	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 Thus, our study suggests that OsWRKY63 negatively regulates chilling tolerance in a model of the OsWRKY63-OsWRKY76-OsDREB1B transcriptional regulatory cascade in rice
OsWRKY63	Os11g0686250	LOC_Os11g45920	 ABA 	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 was expressed in all rice tissues and was induced under cold stress, dehydration stress, high salinity stress, and ABA treatment
OsWRKY63	Os11g0686250	LOC_Os11g45920	reactive oxygen species	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	 OsWRKY63 localized in the nucleus plays a role as a transcription repressor and downregulates many cold stress-related genes and reactive oxygen species scavenging-related genes
OsWRKY65	Os12g0116750|Os12g0116800	LOC_Os12g02470	transcription factor	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	The rice transcription factor OsWRKY65 was identified as a binding partner, and it directly interacted with OsGRXS15 in the nucleus
OsWRKY65	Os12g0116750|Os12g0116800	LOC_Os12g02470	nucleus	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi	The rice transcription factor OsWRKY65 was identified as a binding partner, and it directly interacted with OsGRXS15 in the nucleus
OsWRKY67	Os05g0183100	LOC_Os05g09020	growth	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Overexpression of OsWRKY67 in rice confirmed enhanced disease resistance, but led to a restriction of plant growth in transgenic lines with high levels of OsWRKY67 protein
OsWRKY67	Os05g0183100	LOC_Os05g09020	resistance	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.
OsWRKY67	Os05g0183100	LOC_Os05g09020	resistance	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Activation of OsWRKY67 by T-DNA tagging significantly improved the resistance against two rice pathogens, Magnaporthe oryzae and Xanthomonas oryzae pv
OsWRKY67	Os05g0183100	LOC_Os05g09020	resistance	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	OsWRKY67 RNAi lines significantly reduced resistance to M
OsWRKY67	Os05g0183100	LOC_Os05g09020	resistance	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	oryzae and Xoo isolates tested, and abolished XA21-mediated resistance, implying the possibility of broad-spectrum resistance from OsWRKY67
OsWRKY67	Os05g0183100	LOC_Os05g09020	resistance	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Therefore, these results suggest that OsWRKY67 positively regulates basal and XA21-mediated resistance, and is a promising candidate for genetic improvement of disease resistance in rice
OsWRKY67	Os05g0183100	LOC_Os05g09020	disease	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Overexpression of OsWRKY67 in rice confirmed enhanced disease resistance, but led to a restriction of plant growth in transgenic lines with high levels of OsWRKY67 protein
OsWRKY67	Os05g0183100	LOC_Os05g09020	disease	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Therefore, these results suggest that OsWRKY67 positively regulates basal and XA21-mediated resistance, and is a promising candidate for genetic improvement of disease resistance in rice
OsWRKY67	Os05g0183100	LOC_Os05g09020	disease resistance	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Overexpression of OsWRKY67 in rice confirmed enhanced disease resistance, but led to a restriction of plant growth in transgenic lines with high levels of OsWRKY67 protein
OsWRKY67	Os05g0183100	LOC_Os05g09020	disease resistance	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Therefore, these results suggest that OsWRKY67 positively regulates basal and XA21-mediated resistance, and is a promising candidate for genetic improvement of disease resistance in rice
OsWRKY67	Os05g0183100	LOC_Os05g09020	magnaporthe oryzae	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Activation of OsWRKY67 by T-DNA tagging significantly improved the resistance against two rice pathogens, Magnaporthe oryzae and Xanthomonas oryzae pv
OsWRKY67	Os05g0183100	LOC_Os05g09020	nucleus	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Transcriptional activity and subcellular localization assays indicated that OsWRKY67 is present in the nucleus where it functions as a transcriptional activator
OsWRKY67	Os05g0183100	LOC_Os05g09020	xoo	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	oryzae and Xoo isolates tested, and abolished XA21-mediated resistance, implying the possibility of broad-spectrum resistance from OsWRKY67
OsWRKY67	Os05g0183100	LOC_Os05g09020	transcriptional activator	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Transcriptional activity and subcellular localization assays indicated that OsWRKY67 is present in the nucleus where it functions as a transcriptional activator
OsWRKY67	Os05g0183100	LOC_Os05g09020	reactive oxygen species	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Reactive oxygen species (ROS) rapidly accumulated in OsWRKY67 activation mutant lines in response to elicitor treatment, compared with the controls
OsWRKY67	Os05g0183100	LOC_Os05g09020	plant growth	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Overexpression of OsWRKY67 in rice confirmed enhanced disease resistance, but led to a restriction of plant growth in transgenic lines with high levels of OsWRKY67 protein
OsWRKY67	Os05g0183100	LOC_Os05g09020	leaf	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	Here, we identified that the transcription of OsWRKY67 was strongly activated by leaf and panicle blast infection
OsWRKY67	Os05g0183100	LOC_Os05g09020	leaf	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	Rice plants overexpressing OsWRKY67 showed quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsWRKY67	Os05g0183100	LOC_Os05g09020	leaf	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	These results together suggest the positive role of OsWRKY67 in regulating rice responses to leaf blast, panicle blast and bacterial blight disease
OsWRKY67	Os05g0183100	LOC_Os05g09020	resistance	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.
OsWRKY67	Os05g0183100	LOC_Os05g09020	resistance	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	Rice plants overexpressing OsWRKY67 showed quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsWRKY67	Os05g0183100	LOC_Os05g09020	panicle	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	Here, we identified that the transcription of OsWRKY67 was strongly activated by leaf and panicle blast infection
OsWRKY67	Os05g0183100	LOC_Os05g09020	panicle	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	Rice plants overexpressing OsWRKY67 showed quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsWRKY67	Os05g0183100	LOC_Os05g09020	panicle	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	These results together suggest the positive role of OsWRKY67 in regulating rice responses to leaf blast, panicle blast and bacterial blight disease
OsWRKY67	Os05g0183100	LOC_Os05g09020	disease	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	These results together suggest the positive role of OsWRKY67 in regulating rice responses to leaf blast, panicle blast and bacterial blight disease
OsWRKY67	Os05g0183100	LOC_Os05g09020	salicylic acid	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	RNA-seq analysis indicated that OsWRKY67 induces the transcription of a set of defense-related genes including the ones involved in the salicylic acid (SA)-dependent pathway
OsWRKY67	Os05g0183100	LOC_Os05g09020	blast	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.
OsWRKY67	Os05g0183100	LOC_Os05g09020	blast	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	Here, we identified that the transcription of OsWRKY67 was strongly activated by leaf and panicle blast infection
OsWRKY67	Os05g0183100	LOC_Os05g09020	blast	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	Rice plants overexpressing OsWRKY67 showed quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsWRKY67	Os05g0183100	LOC_Os05g09020	blast	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	In contrast, silencing of OsWRKY67 increased the susceptibility to blast and bacterial blight diseases
OsWRKY67	Os05g0183100	LOC_Os05g09020	blast	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	These results together suggest the positive role of OsWRKY67 in regulating rice responses to leaf blast, panicle blast and bacterial blight disease
OsWRKY67	Os05g0183100	LOC_Os05g09020	nucleus	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	OsWRKY67 is ubiquitously expressed and sub-localized in the nucleus
OsWRKY67	Os05g0183100	LOC_Os05g09020	blight	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.
OsWRKY67	Os05g0183100	LOC_Os05g09020	blight	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	Rice plants overexpressing OsWRKY67 showed quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsWRKY67	Os05g0183100	LOC_Os05g09020	blight	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	In contrast, silencing of OsWRKY67 increased the susceptibility to blast and bacterial blight diseases
OsWRKY67	Os05g0183100	LOC_Os05g09020	blight	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	These results together suggest the positive role of OsWRKY67 in regulating rice responses to leaf blast, panicle blast and bacterial blight disease
OsWRKY67	Os05g0183100	LOC_Os05g09020	bacterial blight	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	Rice plants overexpressing OsWRKY67 showed quantitatively enhanced resistance to leaf blast, panicle blast and bacterial blight
OsWRKY67	Os05g0183100	LOC_Os05g09020	bacterial blight	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	In contrast, silencing of OsWRKY67 increased the susceptibility to blast and bacterial blight diseases
OsWRKY67	Os05g0183100	LOC_Os05g09020	bacterial blight	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	These results together suggest the positive role of OsWRKY67 in regulating rice responses to leaf blast, panicle blast and bacterial blight disease
OsWRKY67	Os05g0183100	LOC_Os05g09020	blight disease	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	In contrast, silencing of OsWRKY67 increased the susceptibility to blast and bacterial blight diseases
OsWRKY67	Os05g0183100	LOC_Os05g09020	blight disease	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	These results together suggest the positive role of OsWRKY67 in regulating rice responses to leaf blast, panicle blast and bacterial blight disease
OsWRKY71	Os02g0181300	LOC_Os02g08440	ga	Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells	To address the cross-talk of GA and ABA signaling, we studied two rice WRKY genes (OsWRKY51 and OsWRKY71) that are ABA-inducible and GA-repressible in embryos and aleurone cells
OsWRKY71	Os02g0181300	LOC_Os02g08440	ga	Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells	However, two of these non-DNA-binding mutants are still able to repress GA induction by enhancing the binding affinity of the wild-type DNA-binding OsWRKY71 repressors
OsWRKY71	Os02g0181300	LOC_Os02g08440	ga	Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells	In contrast, the third non-DNA-binding mutant enhances GA induction of Amy32b-GUS, by interfering with the binding of the wild-type OsWRKY71 or the OsWRKY71/OsWRKY51 repressing complex
OsWRKY71	Os02g0181300	LOC_Os02g08440	transcription factor	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	The expression analyses of the group IIa WRKY transcription factors in rice revealed that OsWRKY28, together with OsWRKY71, exhibit an early-induced expression prior to the late-induced expressions of OsWRKY62 and OsWRKY76
OsWRKY71	Os02g0181300	LOC_Os02g08440	defense response	OsWRKY71, a rice transcription factor, is involved in rice defense response	OsWRKY71, a rice transcription factor, is involved in rice defense response
OsWRKY71	Os02g0181300	LOC_Os02g08440	defense	OsWRKY71, a rice transcription factor, is involved in rice defense response	One of them, OsWRKY71, was up-regulated by several defense signaling molecules, such as SA, methyl jasmonate (MeJA), 1-aminocyclo-propane-1-carboxylic acid (ACC), as well as wounding and pathogen infection, suggesting that OsWRKY71 might function in rice biotic stress response
OsWRKY71	Os02g0181300	LOC_Os02g08440	defense	OsWRKY71, a rice transcription factor, is involved in rice defense response	Furthermore, two marker genes in defense signaling pathway, OsNPR1 and OsPR1b, were constitutively expressed in OsWRKY71-overexpressing transgenic plants
OsWRKY71	Os02g0181300	LOC_Os02g08440	defense	OsWRKY71, a rice transcription factor, is involved in rice defense response	These results suggest that OsWRKY71 might function as a transcriptional regulator upstream of OsNPR1 and OsPR1b in rice defense signaling pathways
OsWRKY71	Os02g0181300	LOC_Os02g08440	defense	OsWRKY71, a rice transcription factor, is involved in rice defense response	OsWRKY71, a rice transcription factor, is involved in rice defense response
OsWRKY71	Os02g0181300	LOC_Os02g08440	jasmonate	OsWRKY71, a rice transcription factor, is involved in rice defense response	One of them, OsWRKY71, was up-regulated by several defense signaling molecules, such as SA, methyl jasmonate (MeJA), 1-aminocyclo-propane-1-carboxylic acid (ACC), as well as wounding and pathogen infection, suggesting that OsWRKY71 might function in rice biotic stress response
OsWRKY71	Os02g0181300	LOC_Os02g08440	ga	A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells	Mutation of the two W boxes prevents the binding of OsWRKY71 to the mutated promoter, and releases the suppression of the OsGAMYB-activated Amy32b expression by OsWRKY71, suggesting that OsWRKY71 blocks GA signaling by functionally interfering with OsGAMYB
OsWRKY71	Os02g0181300	LOC_Os02g08440	ga	A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells	Exogenous GA treatment decreases the steady-state mRNA level of OsWRKY71 and destabilizes the GFP:OsWRKY71 fusion protein
OsWRKY71	Os02g0181300	LOC_Os02g08440	ga	A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells	These findings suggest that OsWRKY71 encodes a transcriptional repressor of GA signaling in aleurone cells
OsWRKY71	Os02g0181300	LOC_Os02g08440	ga	A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells	Third, unlike OsWRKY71, OsWRKY24 is stable upon GA treatment
OsWRKY71	Os02g0181300	LOC_Os02g08440	ABA	Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells	To address the cross-talk of GA and ABA signaling, we studied two rice WRKY genes (OsWRKY51 and OsWRKY71) that are ABA-inducible and GA-repressible in embryos and aleurone cells
OsWRKY71	Os02g0181300	LOC_Os02g08440	transcription factor	OsWRKY71, a rice transcription factor, is involved in rice defense response	OsWRKY71, a rice transcription factor, is involved in rice defense response
OsWRKY71	Os02g0181300	LOC_Os02g08440	defense	Characterization of an Elicitor-Induced Rice WRKY Gene,OsWRKY71	Microarray analysis revealed that several elicitor-induced defense-related genes were upregulated in rice cells overexpressing OsWRKY71
OsWRKY71	Os02g0181300	LOC_Os02g08440	defense	Characterization of an Elicitor-Induced Rice WRKY Gene,OsWRKY71	These results indicate that the activation of defense-related genes by OsWRKY71 was probably indirect
OsWRKY71	Os02g0181300	LOC_Os02g08440	biotic stress	OsWRKY71, a rice transcription factor, is involved in rice defense response	One of them, OsWRKY71, was up-regulated by several defense signaling molecules, such as SA, methyl jasmonate (MeJA), 1-aminocyclo-propane-1-carboxylic acid (ACC), as well as wounding and pathogen infection, suggesting that OsWRKY71 might function in rice biotic stress response
OsWRKY72	Os11g0490900	LOC_Os11g29870	ABA	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	In this study, we report that 35S-OsWRKY72 transgenic Arabidopsis, whose seed germination was retarded under normal conditions, emerged more sensitive to mannitol, NaCl, ABA stresses and sugar starvation than vector plants
OsWRKY72	Os11g0490900	LOC_Os11g29870	ABA	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	In addition, northern blot analysis indicated that, in rice, OsWRKY72 was inducible by polyethylene glycol (PEG), NaCl, naphthalene acetic acid (NAA), ABA and 42 degrees C, similar to its orthologue AtWRKY75 in Arabidopsis, implying that these two WRKY genes might be required for multiple physiological processes in their plants
OsWRKY72	Os11g0490900	LOC_Os11g29870	ABA	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	Together, these results suggest that OsWRKY72 interferes in the signal cross-talk between the ABA signal and auxin transport pathway in transgenic Arabidopsis
OsWRKY72	Os11g0490900	LOC_Os11g29870	auxin	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	Meanwhile, 35S-OsWRKY72 transgenic Arabidopsis displayed early flowering, reduced apical dominance, lost high temperature-induced hypocotyl elongation response, and enhanced gravitropism response, which were similar to the auxin-related gene mutants aux1, axr1 and bud1
OsWRKY72	Os11g0490900	LOC_Os11g29870	auxin	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	Further, semi-quantitative RT-PCR showed that the expression patterns of three auxin-related genes AUX1, AXR1 and BUD1 were significantly altered in rosette leaves and infl orescences of 35S-OsWRKY72 plants compared with control Arabidopsis, and two ABA-related genes ABA2 and ABI4 were induced in 35S-OsWRKY72 seedlings
OsWRKY72	Os11g0490900	LOC_Os11g29870	auxin	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	Together, these results suggest that OsWRKY72 interferes in the signal cross-talk between the ABA signal and auxin transport pathway in transgenic Arabidopsis
OsWRKY72	Os11g0490900	LOC_Os11g29870	auxin	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis
OsWRKY72	Os11g0490900	LOC_Os11g29870	ethylene	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	In addition, northern blot analysis indicated that, in rice, OsWRKY72 was inducible by polyethylene glycol (PEG), NaCl, naphthalene acetic acid (NAA), ABA and 42 degrees C, similar to its orthologue AtWRKY75 in Arabidopsis, implying that these two WRKY genes might be required for multiple physiological processes in their plants
OsWRKY72	Os11g0490900	LOC_Os11g29870	ABA	Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells	Using a transient expression system, we have demonstrated that OsWRKY24 and -45 repress ABA induction of the HVA22 promoter-beta-glucuronidase construct, while OsWRKY72 and -77 synergistically interact with ABA to activate this reporter construct
OsWRKY72	Os11g0490900	LOC_Os11g29870	senescence	Knockdown of GDCH gene reveals reactive oxygen species-induced leaf senescence in rice	Evidences demonstrate ROS induce senescence in SSPs, and transcription factors OsWRKY72 may mediate the ROS-induced senescence
OsWRKY72	Os11g0490900	LOC_Os11g29870	temperature	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	Meanwhile, 35S-OsWRKY72 transgenic Arabidopsis displayed early flowering, reduced apical dominance, lost high temperature-induced hypocotyl elongation response, and enhanced gravitropism response, which were similar to the auxin-related gene mutants aux1, axr1 and bud1
OsWRKY72	Os11g0490900	LOC_Os11g29870	seed	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	In this study, we report that 35S-OsWRKY72 transgenic Arabidopsis, whose seed germination was retarded under normal conditions, emerged more sensitive to mannitol, NaCl, ABA stresses and sugar starvation than vector plants
OsWRKY72	Os11g0490900	LOC_Os11g29870	seed	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	Further, semi-quantitative RT-PCR showed that the expression patterns of three auxin-related genes AUX1, AXR1 and BUD1 were significantly altered in rosette leaves and infl orescences of 35S-OsWRKY72 plants compared with control Arabidopsis, and two ABA-related genes ABA2 and ABI4 were induced in 35S-OsWRKY72 seedlings
OsWRKY72	Os11g0490900	LOC_Os11g29870	seed germination	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	In this study, we report that 35S-OsWRKY72 transgenic Arabidopsis, whose seed germination was retarded under normal conditions, emerged more sensitive to mannitol, NaCl, ABA stresses and sugar starvation than vector plants
OsWRKY72	Os11g0490900	LOC_Os11g29870	seedling	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	Further, semi-quantitative RT-PCR showed that the expression patterns of three auxin-related genes AUX1, AXR1 and BUD1 were significantly altered in rosette leaves and infl orescences of 35S-OsWRKY72 plants compared with control Arabidopsis, and two ABA-related genes ABA2 and ABI4 were induced in 35S-OsWRKY72 seedlings
OsWRKY72	Os11g0490900	LOC_Os11g29870	flower	Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis	Meanwhile, 35S-OsWRKY72 transgenic Arabidopsis displayed early flowering, reduced apical dominance, lost high temperature-induced hypocotyl elongation response, and enhanced gravitropism response, which were similar to the auxin-related gene mutants aux1, axr1 and bud1
OsWRKY72	Os11g0490900	LOC_Os11g29870	transcription factor	Knockdown of GDCH gene reveals reactive oxygen species-induced leaf senescence in rice	Evidences demonstrate ROS induce senescence in SSPs, and transcription factors OsWRKY72 may mediate the ROS-induced senescence
OsWRKY74	Os09g0334500	LOC_Os09g16510	nitrogen	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	In addition, OsWRKY74 may also be involved in the response to deficiencies in iron (Fe) and nitrogen (N) as well as cold stress in rice
OsWRKY74	Os09g0334500	LOC_Os09g16510	tolerance	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	Here, we demonstrated that a rice OsWRKY74 belonging to group III of the WRKY transcription factor family was involved in tolerance to phosphate (Pi) starvation
OsWRKY74	Os09g0334500	LOC_Os09g16510	tolerance	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	Overexpression of OsWRKY74 significantly enhanced tolerance to Pi starvation, whereas transgenic lines with down-regulation of OsWRKY74 were sensitive to Pi starvation
OsWRKY74	Os09g0334500	LOC_Os09g16510	transcription factor	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	Here, we demonstrated that a rice OsWRKY74 belonging to group III of the WRKY transcription factor family was involved in tolerance to phosphate (Pi) starvation
OsWRKY74	Os09g0334500	LOC_Os09g16510	cold stress	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	In addition, OsWRKY74 may also be involved in the response to deficiencies in iron (Fe) and nitrogen (N) as well as cold stress in rice
OsWRKY74	Os09g0334500	LOC_Os09g16510	cold stress	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	These findings highlight the role of OsWRKY74 in modulation of Pi homeostasis and potential crosstalk between P starvation and Fe starvation, and cold stress in rice
OsWRKY74	Os09g0334500	LOC_Os09g16510	stress	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	In addition, OsWRKY74 may also be involved in the response to deficiencies in iron (Fe) and nitrogen (N) as well as cold stress in rice
OsWRKY74	Os09g0334500	LOC_Os09g16510	stress	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	These findings highlight the role of OsWRKY74 in modulation of Pi homeostasis and potential crosstalk between P starvation and Fe starvation, and cold stress in rice
OsWRKY74	Os09g0334500	LOC_Os09g16510	homeostasis	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	These findings highlight the role of OsWRKY74 in modulation of Pi homeostasis and potential crosstalk between P starvation and Fe starvation, and cold stress in rice
OsWRKY74	Os09g0334500	LOC_Os09g16510	nucleus	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	OsWRKY74 was localized in the nucleus and mainly expressed in roots and leaves
OsWRKY74	Os09g0334500	LOC_Os09g16510	iron	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	In addition, OsWRKY74 may also be involved in the response to deficiencies in iron (Fe) and nitrogen (N) as well as cold stress in rice
OsWRKY74	Os09g0334500	LOC_Os09g16510	Pi	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	Overexpression of OsWRKY74 significantly enhanced tolerance to Pi starvation, whereas transgenic lines with down-regulation of OsWRKY74 were sensitive to Pi starvation
OsWRKY74	Os09g0334500	LOC_Os09g16510	Pi	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	These findings highlight the role of OsWRKY74 in modulation of Pi homeostasis and potential crosstalk between P starvation and Fe starvation, and cold stress in rice
OsWRKY74	Os09g0334500	LOC_Os09g16510	phosphate	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	Here, we demonstrated that a rice OsWRKY74 belonging to group III of the WRKY transcription factor family was involved in tolerance to phosphate (Pi) starvation
OsWRKY74	Os09g0334500	LOC_Os09g16510	pi	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	Overexpression of OsWRKY74 significantly enhanced tolerance to Pi starvation, whereas transgenic lines with down-regulation of OsWRKY74 were sensitive to Pi starvation
OsWRKY74	Os09g0334500	LOC_Os09g16510	pi	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	These findings highlight the role of OsWRKY74 in modulation of Pi homeostasis and potential crosstalk between P starvation and Fe starvation, and cold stress in rice
OsWRKY74	Os09g0334500	LOC_Os09g16510	Pi homeostasis	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	These findings highlight the role of OsWRKY74 in modulation of Pi homeostasis and potential crosstalk between P starvation and Fe starvation, and cold stress in rice
OsWRKY76	Os09g0417600	LOC_Os09g25060	disease resistance	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	These results strongly suggest that OsWRKY76 plays dual and opposing roles in blast disease resistance and cold tolerance
OsWRKY76	Os09g0417600	LOC_Os09g25060	cold tolerance	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	These results strongly suggest that OsWRKY76 plays dual and opposing roles in blast disease resistance and cold tolerance
OsWRKY76	Os09g0417600	LOC_Os09g25060	temperature	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	The expression of OsWRKY76 was induced within 48h after inoculation with rice blast fungus (Magnaporthe oryzae), and by wounding, low temperature, benzothiadiazole, and abscisic acid
OsWRKY76	Os09g0417600	LOC_Os09g25060	transcription factor	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	OsWRKY76 encodes a group IIa WRKY transcription factor of rice
OsWRKY76	Os09g0417600	LOC_Os09g25060	blast	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	The expression of OsWRKY76 was induced within 48h after inoculation with rice blast fungus (Magnaporthe oryzae), and by wounding, low temperature, benzothiadiazole, and abscisic acid
OsWRKY76	Os09g0417600	LOC_Os09g25060	blast	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	Microarray analysis revealed that overexpression of OsWRKY76 suppresses the induction of a specific set of PR genes and of genes involved in phytoalexin synthesis after inoculation with blast fungus, consistent with the observation that the levels of phytoalexins in the transgenic rice plants remained significantly lower than those in non-transformed control plants
OsWRKY76	Os09g0417600	LOC_Os09g25060	blast	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	These results strongly suggest that OsWRKY76 plays dual and opposing roles in blast disease resistance and cold tolerance
OsWRKY76	Os09g0417600	LOC_Os09g25060	magnaporthe oryzae	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	The expression of OsWRKY76 was induced within 48h after inoculation with rice blast fungus (Magnaporthe oryzae), and by wounding, low temperature, benzothiadiazole, and abscisic acid
OsWRKY76	Os09g0417600	LOC_Os09g25060	blast disease	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	These results strongly suggest that OsWRKY76 plays dual and opposing roles in blast disease resistance and cold tolerance
OsWRKY76	Os09g0417600	LOC_Os09g25060	abiotic stress	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	Furthermore, overexpression of OsWRKY76 led to the increased expression of abiotic stress-associated genes such as peroxidase and lipid metabolism genes
OsWRKY76	Os09g0417600	LOC_Os09g25060	disease	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance	These results strongly suggest that OsWRKY76 plays dual and opposing roles in blast disease resistance and cold tolerance
OsWRKY76	Os09g0417600	LOC_Os09g25060	transcription factor	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus	The expression analyses of the group IIa WRKY transcription factors in rice revealed that OsWRKY28, together with OsWRKY71, exhibit an early-induced expression prior to the late-induced expressions of OsWRKY62 and OsWRKY76
OsWRKY76	Os09g0417600	LOC_Os09g25060	resistance	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Metabolomic and transcriptomic approaches were used to dissect the enhanced disease resistance in the plants harbouring a RNA interfering construct of OsWRKY62 and OsWRKY76 (dsOW62/76) genes
OsWRKY76	Os09g0417600	LOC_Os09g25060	defense	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.
OsWRKY76	Os09g0417600	LOC_Os09g25060	disease	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Metabolomic and transcriptomic approaches were used to dissect the enhanced disease resistance in the plants harbouring a RNA interfering construct of OsWRKY62 and OsWRKY76 (dsOW62/76) genes
OsWRKY76	Os09g0417600	LOC_Os09g25060	salicylic acid	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 Salicylic acid (SA) and jasmonic acid (JA)/JA-Ile contents were increased in dsOW62/76 and knockout lines of individual OsWRKY62 and OsWRKY76 genes
OsWRKY76	Os09g0417600	LOC_Os09g25060	disease resistance	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Metabolomic and transcriptomic approaches were used to dissect the enhanced disease resistance in the plants harbouring a RNA interfering construct of OsWRKY62 and OsWRKY76 (dsOW62/76) genes
OsWRKY76	Os09g0417600	LOC_Os09g25060	jasmonic	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 Salicylic acid (SA) and jasmonic acid (JA)/JA-Ile contents were increased in dsOW62/76 and knockout lines of individual OsWRKY62 and OsWRKY76 genes
OsWRKY76	Os09g0417600	LOC_Os09g25060	jasmonic acid	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 Salicylic acid (SA) and jasmonic acid (JA)/JA-Ile contents were increased in dsOW62/76 and knockout lines of individual OsWRKY62 and OsWRKY76 genes
OsWRKY76	Os09g0417600	LOC_Os09g25060	 sa 	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 These results indicate that OsWRKY62 and OsWRKY76 function as negative regulators of biosynthetic defense-related metabolites and provide evidence for an important role of phenylpropanoid pathway in SA production in rice
OsWRKY76	Os09g0417600	LOC_Os09g25060	SA	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	 These results indicate that OsWRKY62 and OsWRKY76 function as negative regulators of biosynthetic defense-related metabolites and provide evidence for an important role of phenylpropanoid pathway in SA production in rice
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Here, OsWRKY76 positively regulated drought stress in rice
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Notably, OsWRKY76 knockout weakened drought tolerance at the seedling stage and decreased MeJA sensitivity
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Yeast one-hybrid, electrophoretic mobility shift, and dual-luciferase assays showed that OsWRKY76 and OsbHLH148 bound directly to the OsDREB1E promoter and activated OsDREB1E expression in response to drought stress
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 These results suggest that OsWRKY76 confers drought tolerance through OsbHLH148-mediated jasmonate signaling in rice, offering a new clue to uncover the mechanisms behind drought tolerance
OsWRKY76	Os09g0417600	LOC_Os09g25060	stress	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.
OsWRKY76	Os09g0417600	LOC_Os09g25060	stress	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Here, OsWRKY76 positively regulated drought stress in rice
OsWRKY76	Os09g0417600	LOC_Os09g25060	stress	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Yeast one-hybrid, electrophoretic mobility shift, and dual-luciferase assays showed that OsWRKY76 and OsbHLH148 bound directly to the OsDREB1E promoter and activated OsDREB1E expression in response to drought stress
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought stress	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought stress	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Here, OsWRKY76 positively regulated drought stress in rice
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought stress	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Yeast one-hybrid, electrophoretic mobility shift, and dual-luciferase assays showed that OsWRKY76 and OsbHLH148 bound directly to the OsDREB1E promoter and activated OsDREB1E expression in response to drought stress
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought stress 	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought stress 	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Here, OsWRKY76 positively regulated drought stress in rice
OsWRKY76	Os09g0417600	LOC_Os09g25060	seedling	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Notably, OsWRKY76 knockout weakened drought tolerance at the seedling stage and decreased MeJA sensitivity
OsWRKY76	Os09g0417600	LOC_Os09g25060	jasmonate	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.
OsWRKY76	Os09g0417600	LOC_Os09g25060	jasmonate	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 These results suggest that OsWRKY76 confers drought tolerance through OsbHLH148-mediated jasmonate signaling in rice, offering a new clue to uncover the mechanisms behind drought tolerance
OsWRKY76	Os09g0417600	LOC_Os09g25060	tolerance	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Notably, OsWRKY76 knockout weakened drought tolerance at the seedling stage and decreased MeJA sensitivity
OsWRKY76	Os09g0417600	LOC_Os09g25060	tolerance	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 These results suggest that OsWRKY76 confers drought tolerance through OsbHLH148-mediated jasmonate signaling in rice, offering a new clue to uncover the mechanisms behind drought tolerance
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought tolerance	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 Notably, OsWRKY76 knockout weakened drought tolerance at the seedling stage and decreased MeJA sensitivity
OsWRKY76	Os09g0417600	LOC_Os09g25060	drought tolerance	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 These results suggest that OsWRKY76 confers drought tolerance through OsbHLH148-mediated jasmonate signaling in rice, offering a new clue to uncover the mechanisms behind drought tolerance
OsWRKY76	Os09g0417600	LOC_Os09g25060	protoplasts	OsWRKY76 positively regulates drought stress via OsbHLH148-mediated jasmonate signaling in rice.	 The OsJAZ12 protein repressed the transactivation activity of OsbHLH148, and this repression was partly restored by OsWRKY76 in rice protoplasts
OsWRKY78	Os07g0583700	LOC_Os07g39480	seed development	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice	Taken together, these results suggest that OsWRKY78 may acts as a stem elongation and seed development regulator in rice
OsWRKY78	Os07g0583700	LOC_Os07g39480	seed development	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice
OsWRKY78	Os07g0583700	LOC_Os07g39480	seed	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice	Taken together, these results suggest that OsWRKY78 may acts as a stem elongation and seed development regulator in rice
OsWRKY78	Os07g0583700	LOC_Os07g39480	seed	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice
OsWRKY78	Os07g0583700	LOC_Os07g39480	stem	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice	Real-time RT-PCR analysis showed that OsWRKY78 transcript was most abundant in elongating stems though its expression was detected in all the tested organs
OsWRKY78	Os07g0583700	LOC_Os07g39480	stem	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice	Taken together, these results suggest that OsWRKY78 may acts as a stem elongation and seed development regulator in rice
OsWRKY78	Os07g0583700	LOC_Os07g39480	stem	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice
OsWRKY78	Os07g0583700	LOC_Os07g39480	transcription factor	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice
OsWRKY78	Os07g0583700	LOC_Os07g39480	dwarf	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice	Transgenic plants with OsWRKY78 overexpression exhibited a phenotype identical to the wild type, whereas inhibition of OsWRKY78 expression resulted in a semi-dwarf and small kernel phenotype due to reduced cell length in transgenic plants
OsWRKY80	Os09g0481700	LOC_Os09g30400	root	Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence	We show that the putative WRKY transcription factor OsWRKY80 is up-regulated in rice leaves, stems and roots after Fe-excess treatment
OsWRKY80	Os09g0481700	LOC_Os09g30400	drought	Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence	This up-regulation is also observed after dark-induced senescence and drought stress, indicating that OsWRKY80 could be a general stress-responsive gene
OsWRKY80	Os09g0481700	LOC_Os09g30400	photosynthesis	Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence	We isolated 24 sequences which have putative functions in distinct cellular processes, such as transcription regulation (OsWRKY80), stress response (OsGAP1, DEAD-BOX RNA helicase), proteolysis (oryzain-alpha, rhomboid protein), photosynthesis (chlorophyll a/b binding protein), sugar metabolism (beta glucosidase) and electron transport (NADH ubiquinone oxireductase)
OsWRKY80	Os09g0481700	LOC_Os09g30400	senescence	Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence	This up-regulation is also observed after dark-induced senescence and drought stress, indicating that OsWRKY80 could be a general stress-responsive gene
OsWRKY80	Os09g0481700	LOC_Os09g30400	transcription factor	Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence	We show that the putative WRKY transcription factor OsWRKY80 is up-regulated in rice leaves, stems and roots after Fe-excess treatment
OsWRKY80	Os09g0481700	LOC_Os09g30400	stem	Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence	We show that the putative WRKY transcription factor OsWRKY80 is up-regulated in rice leaves, stems and roots after Fe-excess treatment
OsWRKY80	Os09g0481700	LOC_Os09g30400	resistance	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	Overexpression of OsWRKY80 in rice plants significantly enhanced disease resistance to R
OsWRKY80	Os09g0481700	LOC_Os09g30400	resistance	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	Suppression of OsWRKY80 by RNA interference (RNAi), on the other hand, compromised disease resistance to R
OsWRKY80	Os09g0481700	LOC_Os09g30400	ethylene	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	OsWRKY80 expression is also induced by exogenous jasmonic acid (JA) and ethylene (ET), but not by salicylic acid (SA)
OsWRKY80	Os09g0481700	LOC_Os09g30400	disease	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	Overexpression of OsWRKY80 in rice plants significantly enhanced disease resistance to R
OsWRKY80	Os09g0481700	LOC_Os09g30400	disease	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	Suppression of OsWRKY80 by RNA interference (RNAi), on the other hand, compromised disease resistance to R
OsWRKY80	Os09g0481700	LOC_Os09g30400	salicylic acid	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	OsWRKY80 expression is also induced by exogenous jasmonic acid (JA) and ethylene (ET), but not by salicylic acid (SA)
OsWRKY80	Os09g0481700	LOC_Os09g30400	disease resistance	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	Overexpression of OsWRKY80 in rice plants significantly enhanced disease resistance to R
OsWRKY80	Os09g0481700	LOC_Os09g30400	disease resistance	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	Suppression of OsWRKY80 by RNA interference (RNAi), on the other hand, compromised disease resistance to R
OsWRKY80	Os09g0481700	LOC_Os09g30400	jasmonic	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	OsWRKY80 expression is also induced by exogenous jasmonic acid (JA) and ethylene (ET), but not by salicylic acid (SA)
OsWRKY80	Os09g0481700	LOC_Os09g30400	jasmonic acid	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani	OsWRKY80 expression is also induced by exogenous jasmonic acid (JA) and ethylene (ET), but not by salicylic acid (SA)
OsWRKY82	None	None	ethylene	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	These indicate that OsWRKY82 is a multiply stress-inducible gene responding to both biotic and abiotic stresses, and may be involved in the regulation of defense response to pathogens and tolerance against abiotic stresses by jasmonic acid/ethylene-dependent signaling pathway
OsWRKY82	None	None	jasmonic acid	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	These indicate that OsWRKY82 is a multiply stress-inducible gene responding to both biotic and abiotic stresses, and may be involved in the regulation of defense response to pathogens and tolerance against abiotic stresses by jasmonic acid/ethylene-dependent signaling pathway
OsWRKY82	None	None	gibberellin	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	By contrast, gibberellin suppressed the expression of OsWRKY82
OsWRKY82	None	None	abiotic stress	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	These indicate that OsWRKY82 is a multiply stress-inducible gene responding to both biotic and abiotic stresses, and may be involved in the regulation of defense response to pathogens and tolerance against abiotic stresses by jasmonic acid/ethylene-dependent signaling pathway
OsWRKY82	None	None	salinity	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	Additionally, OsWRKY82 transcripts could be induced by wounding and heat shocking, but not by abscisic acid, cold, high salinity and dehydration
OsWRKY82	None	None	defense response	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	These indicate that OsWRKY82 is a multiply stress-inducible gene responding to both biotic and abiotic stresses, and may be involved in the regulation of defense response to pathogens and tolerance against abiotic stresses by jasmonic acid/ethylene-dependent signaling pathway
OsWRKY82	None	None	flower	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	The transcript level of OsWRKY82 was relatively higher in stems, leaves, and flowers, and less abundant in grains
OsWRKY82	None	None	defense	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	These indicate that OsWRKY82 is a multiply stress-inducible gene responding to both biotic and abiotic stresses, and may be involved in the regulation of defense response to pathogens and tolerance against abiotic stresses by jasmonic acid/ethylene-dependent signaling pathway
OsWRKY82	None	None	jasmonic	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	These indicate that OsWRKY82 is a multiply stress-inducible gene responding to both biotic and abiotic stresses, and may be involved in the regulation of defense response to pathogens and tolerance against abiotic stresses by jasmonic acid/ethylene-dependent signaling pathway
OsWRKY82	None	None	grain	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	The transcript level of OsWRKY82 was relatively higher in stems, leaves, and flowers, and less abundant in grains
OsWRKY82	None	None	biotic stress	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	These indicate that OsWRKY82 is a multiply stress-inducible gene responding to both biotic and abiotic stresses, and may be involved in the regulation of defense response to pathogens and tolerance against abiotic stresses by jasmonic acid/ethylene-dependent signaling pathway
OsWRKY82	None	None	jasmonate	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	The expression of OsWRKY82 was up-regulated by methyl jasmonate and ethephon, whereas salicylic acid exerted no effects on its expression
OsWRKY82	None	None	stem	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	The transcript level of OsWRKY82 was relatively higher in stems, leaves, and flowers, and less abundant in grains
OsWRKY82	None	None	salicylic acid	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	The expression of OsWRKY82 was up-regulated by methyl jasmonate and ethephon, whereas salicylic acid exerted no effects on its expression
OsWRKY88	Os07g0596900	LOC_Os07g40570	resistance	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance	Assays of disease in OsWRKY10KD and OsWRKY88KD lines following infection with an incompatible Xoo race, which induced Xa1-mediated resistance in wild-type plants, showed that OsWRKY10 and OsWRKY88 were positive regulators of Xa1-mediated resistance
OsWRKY88	Os07g0596900	LOC_Os07g40570	disease	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance	Assays of disease in OsWRKY10KD and OsWRKY88KD lines following infection with an incompatible Xoo race, which induced Xa1-mediated resistance in wild-type plants, showed that OsWRKY10 and OsWRKY88 were positive regulators of Xa1-mediated resistance
OsWRKY88	Os07g0596900	LOC_Os07g40570	xoo	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance	Assays of disease in OsWRKY10KD and OsWRKY88KD lines following infection with an incompatible Xoo race, which induced Xa1-mediated resistance in wild-type plants, showed that OsWRKY10 and OsWRKY88 were positive regulators of Xa1-mediated resistance
OsWRKY88	Os07g0596900	LOC_Os07g40570	transcriptional regulator	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance	In the second transcriptional regulatory cascade, OsWRKY47 acted downstream of OsWRKY10, and OsWRKY88 acted upstream
OsWRKY89	Os11g0117400	LOC_Os11g02520	abiotic stress	Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants	These results suggest that OsWRKY89 plays an important role in response to biotic and abiotic stresses
OsWRKY89	Os11g0117400	LOC_Os11g02520	biotic stress	Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants	These results suggest that OsWRKY89 plays an important role in response to biotic and abiotic stresses
OsWRKY89	Os11g0117400	LOC_Os11g02520	growth	Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants	Overexpression of OsWRKY89 led to growth retardation at the early stage and reduction of internode length
OsWRKY89	Os11g0117400	LOC_Os11g02520	jasmonate	Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants	RNA gel blot analysis indicated that OsWRKY89 was strongly induced by treatments of methyl jasmonate and UV-B radiation
OsWRKY89	Os11g0117400	LOC_Os11g02520	leaf	Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants	Scanning electron microscopy revealed an increase in wax deposition on leaf surfaces of the OsWRKY89 overexpression lines and a decrease in wax loading in the RNAi-mediated OsWRKY89 suppression lines
OsWRKY89	Os11g0117400	LOC_Os11g02520	blast	Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants	Interestingly, overexpression of the OsWRKY89 gene enhanced resistance to the rice blast fungus and white-backed planthopper as well as tolerance to UV-B irradiation
OsWRKYq6	NONE	NONE	transcription factor	Applying HPLC to Screening QTLs for BLB Resistance in Rice.	 OsWRKYq6 has a very high homology sequence with WRKY transcription factor 39, and when inoculated with Xoo, the relative expression level of the resistant population was higher than that of the susceptible population
OsWRKYq6	NONE	NONE	resistant	Applying HPLC to Screening QTLs for BLB Resistance in Rice.	 OsWRKYq6 has a very high homology sequence with WRKY transcription factor 39, and when inoculated with Xoo, the relative expression level of the resistant population was higher than that of the susceptible population
OsWS1	Os04g0481900	LOC_Os04g40590	cuticular wax biosynthesis	OsWS1 involved in cuticular wax biosynthesis is regulated by osa-miR1848.	OsWS1 involved in cuticular wax biosynthesis is regulated by osa-miR1848.
OsWS1	Os04g0481900	LOC_Os04g40590	wax biosynthesis	OsWS1 involved in cuticular wax biosynthesis is regulated by osa-miR1848.	OsWS1 involved in cuticular wax biosynthesis is regulated by osa-miR1848.
OsWS1	Os04g0481900	LOC_Os04g40590	wax biosynthesis	OsWS1 involved in cuticular wax biosynthesis is regulated by osa-miR1848.	Here, we show that rice OsWS1, a member of the membrane-bound O-acyl transferase gene family, involved in wax biosynthesis and was regulated by an osa-miR1848.
OsWS1	Os04g0481900	LOC_Os04g40590	cuticular wax formation	OsWS1 involved in cuticular wax biosynthesis is regulated by osa-miR1848.	These results suggest that OsWS1 is regulated by osa-miR1848 and participates in cuticular wax formation.
OsWSL3	Os10g0462800	LOC_Os10g32540	chloroplast development	WSL3, a component of the plastid-encoded plastid RNA polymerase, is essential for early chloroplast development in rice.	WSL3, a component of the plastid-encoded plastid RNA polymerase, is essential for early chloroplast development in rice.
OsWSL3	Os10g0462800	LOC_Os10g32540	chloroplast development	WSL3, a component of the plastid-encoded plastid RNA polymerase, is essential for early chloroplast development in rice.	We provide evidence suggesting that WSL3 is essential for early chloroplast development by interacting with subunits of the PEP complex.
OsWSL4	Os02g0565400	LOC_Os02g35750	chloroplast biogenesis	WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development	WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development
OsWSL4	Os02g0565400	LOC_Os02g35750	leaf development	WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development	Our findings identify WSL4 as a novel P-family PPR protein essential for chloroplast RNA group II intron splicing during early leaf development in rice.
OsWSL4	Os02g0565400	LOC_Os02g35750	leaf development	WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development	The wsl4 mutant develops white-striped leaves during early leaf development, characterized by decreased chlorophyll content and malformed chloroplasts.
OsWSS1	Os11g0448000	LOC_Os11g26130	chloroplast	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 In addition, we found that the expression of senescence-associated genes (SAGs) was significantly higher, while the expression of genes associated with chloroplast development and photosynthesis was significantly downregulated in oswss1 as compared with the wild type
OsWSS1	Os11g0448000	LOC_Os11g26130	development	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 In addition, we found that the expression of senescence-associated genes (SAGs) was significantly higher, while the expression of genes associated with chloroplast development and photosynthesis was significantly downregulated in oswss1 as compared with the wild type
OsWSS1	Os11g0448000	LOC_Os11g26130	Kinase	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 Map-based cloning revealed that OsWSS1 encodes transmembrane kinase TMK1
OsWSS1	Os11g0448000	LOC_Os11g26130	kinase	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 Map-based cloning revealed that OsWSS1 encodes transmembrane kinase TMK1
OsWSS1	Os11g0448000	LOC_Os11g26130	map-based cloning	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 Map-based cloning revealed that OsWSS1 encodes transmembrane kinase TMK1
OsWSS1	Os11g0448000	LOC_Os11g26130	photosynthesis	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 In addition, we found that the expression of senescence-associated genes (SAGs) was significantly higher, while the expression of genes associated with chloroplast development and photosynthesis was significantly downregulated in oswss1 as compared with the wild type
OsWSS1	Os11g0448000	LOC_Os11g26130	cell death	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 Mutation of OsWSS1 led to hyper-accumulation of reactive oxygen species (ROS), more severe DNA fragmentation, and cell death than that of the wild-type control
OsWSS1	Os11g0448000	LOC_Os11g26130	chloroplast development	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 In addition, we found that the expression of senescence-associated genes (SAGs) was significantly higher, while the expression of genes associated with chloroplast development and photosynthesis was significantly downregulated in oswss1 as compared with the wild type
OsWSS1	Os11g0448000	LOC_Os11g26130	plasma membrane	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 OsWSS1 was constitutively expressed in all tissues and its encoded protein is localized to the plasma membrane
OsWSS1	Os11g0448000	LOC_Os11g26130	chlorophyll	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 Moreover, oswss1 exhibits slightly rolled leaves with irregular epidermal cells, decreased chlorophyll contents, and defective stomata and chloroplasts as compared with the wild type
OsWSS1	Os11g0448000	LOC_Os11g26130	chlorophyll content	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 Moreover, oswss1 exhibits slightly rolled leaves with irregular epidermal cells, decreased chlorophyll contents, and defective stomata and chloroplasts as compared with the wild type
OsWSS1	Os11g0448000	LOC_Os11g26130	reactive oxygen species	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 Mutation of OsWSS1 led to hyper-accumulation of reactive oxygen species (ROS), more severe DNA fragmentation, and cell death than that of the wild-type control
OsWSS1	Os11g0448000	LOC_Os11g26130	stomata	WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.	 Moreover, oswss1 exhibits slightly rolled leaves with irregular epidermal cells, decreased chlorophyll contents, and defective stomata and chloroplasts as compared with the wild type
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	growth	Enhancing xanthine dehydrogenase activity is an effective way to delay leaf senescence and increase rice yield.	), an OsXDH over-expression transgenic line (OE9), and an OsXDH RNA interference line (Ri3) during different growth stages
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	abiotic stress	Enhancing xanthine dehydrogenase activity is an effective way to delay leaf senescence and increase rice yield.	 The expression patterns of the OsXDH gene confirmed that XDH was involved in the regulation of normal and abiotic stress-induced ageing processes in rice
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	biotic stress	Enhancing xanthine dehydrogenase activity is an effective way to delay leaf senescence and increase rice yield.	 The expression patterns of the OsXDH gene confirmed that XDH was involved in the regulation of normal and abiotic stress-induced ageing processes in rice
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	leaf	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 These results indicated that OsSAC3 played a vital role in leaf senescence by regulating carbon metabolism in rice
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	leaf senescence	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 These results indicated that OsSAC3 played a vital role in leaf senescence by regulating carbon metabolism in rice
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	senescence	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 These results indicated that OsSAC3 played a vital role in leaf senescence by regulating carbon metabolism in rice
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	starch	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 Moreover, carbohydrate distribution was changed, leading to the accumulation of sucrose and starch in the leaves containing ossac3 on account of decreased expression of OsSWEET3a, OsSWEET6a and OsSWEET14 and oxidized inactivation of starch degradation enzymes in ossac3
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	map-based cloning	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 Based on map-based cloning, OsSAC3 was identified, which encodes the xanthine dehydrogenase
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	cytoplasm	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 OsSAC3 was constitutively expressed in all examined tissues and the OsSAC3 protein located in the cytoplasm
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	sugar	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 Transcriptional analysis revealed purine metabolism, chlorophyll metabolism, photosynthesis, sugar metabolism and redox balance were affected in the ossac3 mutant
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	chlorophyll	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 Transcriptional analysis revealed purine metabolism, chlorophyll metabolism, photosynthesis, sugar metabolism and redox balance were affected in the ossac3 mutant
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	sucrose	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 Moreover, carbohydrate distribution was changed, leading to the accumulation of sucrose and starch in the leaves containing ossac3 on account of decreased expression of OsSWEET3a, OsSWEET6a and OsSWEET14 and oxidized inactivation of starch degradation enzymes in ossac3
OsXDH|OsSAC3	Os03g0429800	LOC_Os03g31550	dehydrogenase	Mutation of OsSAC3, Encoding the Xanthine Dehydrogenase, Caused Early Senescence in Rice.	 Based on map-based cloning, OsSAC3 was identified, which encodes the xanthine dehydrogenase
OsXIP	Os05g0247800	LOC_Os05g15880	root	RNAi-mediated knockdown of the XIP-type endoxylanase inhibitor gene, OsXIP, has no effect on grain development and germination in rice	Analysis using an OsXIP-specific antibody revealed that OsXIP is markedly accumulated in apoplast in rice root cells by wounding
OsXIP	Os05g0247800	LOC_Os05g15880	root	Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice	The transcripts of OsXIP and riceXIP were undetectable under normal conditions, and were drastically induced by wounding and methyl jasmonate (MeJA) treatment in the root
OsXIP	Os05g0247800	LOC_Os05g15880	defense	RNAi-mediated knockdown of the XIP-type endoxylanase inhibitor gene, OsXIP, has no effect on grain development and germination in rice	These results reinforced the possibility that OsXIP is involved in plant defense mechanisms against phytopathogens
OsXIP	Os05g0247800	LOC_Os05g15880	jasmonate	Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice	The transcripts of OsXIP and riceXIP were undetectable under normal conditions, and were drastically induced by wounding and methyl jasmonate (MeJA) treatment in the root
OsXIP	Os05g0247800	LOC_Os05g15880	grain	RNAi-mediated knockdown of the XIP-type endoxylanase inhibitor gene, OsXIP, has no effect on grain development and germination in rice	Although the OsXIP gene was specifically expressed in mature grains under basal conditions, recombinant OsXIP had no effect on rice endogenous xylanases, and OsXIP-suppressed transgenic rice plants did not exhibit any change in grain development and germination, suggesting that rice development may be independent of OsXIP
OsXIP	Os05g0247800	LOC_Os05g15880	grain	RNAi-mediated knockdown of the XIP-type endoxylanase inhibitor gene, OsXIP, has no effect on grain development and germination in rice	RNAi-mediated knockdown of the XIP-type endoxylanase inhibitor gene, OsXIP, has no effect on grain development and germination in rice
OsXPB2	Os01g0691600	LOC_Os01g49680	abiotic stress	Emerging Importance of Helicases in Plant Stress Tolerance: Characterization of Oryza sativa Repair Helicase XPB2 Promoter and Its Functional Validation in Tobacco under Multiple Stresses.	The present research revealed that OsXPB2 promoter contains cis-elements accounting for various abiotic stresses (salt, dehydration, or cold) and hormone (Auxin, ABA, or MeJA) induced GUS expression/activity in the promoter-reporter assay
OsXPB2	Os01g0691600	LOC_Os01g49680	abiotic stress	Emerging Importance of Helicases in Plant Stress Tolerance: Characterization of Oryza sativa Repair Helicase XPB2 Promoter and Its Functional Validation in Tobacco under Multiple Stresses.	The present findings suggest that OsXPB2 promoter is a multi-stress inducible promoter and has potential applications in sustainable crop production under abiotic stresses by regulating desirable pattern of gene expression
OsXPB2	Os01g0691600	LOC_Os01g49680	ABA	Emerging Importance of Helicases in Plant Stress Tolerance: Characterization of Oryza sativa Repair Helicase XPB2 Promoter and Its Functional Validation in Tobacco under Multiple Stresses.	The promoter region of OsXPB2 contains CACG, GTAACG, CACGTG, CGTCA CCGCCGCGCT cis acting-elements which are reported to be salt, dehydration, cold, MeJA, or ABA responsive, respectively
OsXPB2	Os01g0691600	LOC_Os01g49680	stress	Emerging Importance of Helicases in Plant Stress Tolerance: Characterization of Oryza sativa Repair Helicase XPB2 Promoter and Its Functional Validation in Tobacco under Multiple Stresses.	The in vivo validation of functionality/activity of OsXPB2 promoter under abiotic and hormonal stress conditions was performed by Agrobacterium-mediated transient assay in tobacco leaves using OsXPB2::GUS chimeric construct
OsXPB2	Os01g0691600	LOC_Os01g49680	biotic stress	Emerging Importance of Helicases in Plant Stress Tolerance: Characterization of Oryza sativa Repair Helicase XPB2 Promoter and Its Functional Validation in Tobacco under Multiple Stresses.	The present research revealed that OsXPB2 promoter contains cis-elements accounting for various abiotic stresses (salt, dehydration, or cold) and hormone (Auxin, ABA, or MeJA) induced GUS expression/activity in the promoter-reporter assay
OsXPB2	Os01g0691600	LOC_Os01g49680	biotic stress	Emerging Importance of Helicases in Plant Stress Tolerance: Characterization of Oryza sativa Repair Helicase XPB2 Promoter and Its Functional Validation in Tobacco under Multiple Stresses.	The present findings suggest that OsXPB2 promoter is a multi-stress inducible promoter and has potential applications in sustainable crop production under abiotic stresses by regulating desirable pattern of gene expression
OsXPB2	Os01g0691600	LOC_Os01g49680	ABA	Emerging Importance of Helicases in Plant Stress Tolerance: Characterization of Oryza sativa Repair Helicase XPB2 Promoter and Its Functional Validation in Tobacco under Multiple Stresses.	The promoter region of OsXPB2 contains CACG, GTAACG, CACGTG, CGTCA CCGCCGCGCT cis acting-elements which are reported to be salt, dehydration, cold, MeJA, or ABA responsive, respectively
OsXRCC1	Os06g0144000	LOC_Os06g05190	DNA repair	Characterization of plant XRCC1 and its interaction with proliferating cell nuclear antigen.	These results suggest that OsXRCC1 contributes to DNA repair pathways that differ from the mammalian BER system.
OsXTH8	Os08g0237000	LOC_Os08g13920	gibberellin	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	A novel rice (Oryza sativa) XTH-related gene, OsXTH8, was cloned and characterized after being identified by cDNA microarray analysis of gibberellin-induced changes in gene expression in rice seedlings
OsXTH8	Os08g0237000	LOC_Os08g13920	gibberellin	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	These results indicate that OsXTH8 is differentially expressed in rice leaf sheath in relation to gibberellin and potentially involved in cell elongation processes
OsXTH8	Os08g0237000	LOC_Os08g13920	seedling	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	A novel rice (Oryza sativa) XTH-related gene, OsXTH8, was cloned and characterized after being identified by cDNA microarray analysis of gibberellin-induced changes in gene expression in rice seedlings
OsXTH8	Os08g0237000	LOC_Os08g13920	leaf	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	OsXTH8 was preferentially expressed in rice leaf sheath in response to gibberellic acid
OsXTH8	Os08g0237000	LOC_Os08g13920	leaf	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	In situ hybridization and OsXTH8 promoter GUS fusion analysis revealed that OsXTH8 was highly expressed in vascular bundles of leaf sheath and young nodal roots where the cells are actively undergoing elongation and differentiation
OsXTH8	Os08g0237000	LOC_Os08g13920	leaf	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	These results indicate that OsXTH8 is differentially expressed in rice leaf sheath in relation to gibberellin and potentially involved in cell elongation processes
OsXTH8	Os08g0237000	LOC_Os08g13920	cell elongation	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	These results indicate that OsXTH8 is differentially expressed in rice leaf sheath in relation to gibberellin and potentially involved in cell elongation processes
OsXTH8	Os08g0237000	LOC_Os08g13920	root	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	In situ hybridization and OsXTH8 promoter GUS fusion analysis revealed that OsXTH8 was highly expressed in vascular bundles of leaf sheath and young nodal roots where the cells are actively undergoing elongation and differentiation
OsXTH8	Os08g0237000	LOC_Os08g13920	vascular bundle	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	In situ hybridization and OsXTH8 promoter GUS fusion analysis revealed that OsXTH8 was highly expressed in vascular bundles of leaf sheath and young nodal roots where the cells are actively undergoing elongation and differentiation
OsXTH8	Os08g0237000	LOC_Os08g13920	growth	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	Transgenic rice expressing an RNAi construct of OsXTH8 exhibited repressed growth
OsXTH8	Os08g0237000	LOC_Os08g13920	height	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	In two genetic mutants of rice with abnormal height, the expression of OsXTH8 positively correlated with the height of the mutants
OsXTH8	Os08g0237000	LOC_Os08g13920	sheath	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	OsXTH8 was preferentially expressed in rice leaf sheath in response to gibberellic acid
OsXTH8	Os08g0237000	LOC_Os08g13920	sheath	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	In situ hybridization and OsXTH8 promoter GUS fusion analysis revealed that OsXTH8 was highly expressed in vascular bundles of leaf sheath and young nodal roots where the cells are actively undergoing elongation and differentiation
OsXTH8	Os08g0237000	LOC_Os08g13920	sheath	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice	These results indicate that OsXTH8 is differentially expressed in rice leaf sheath in relation to gibberellin and potentially involved in cell elongation processes
OsXTR1|XTH2	Os11g0539200	LOC_Os11g33270	gibberellin	Characterization of XET-related genes of rice	OsXTR1 and OsXTR3 were up-regulated by gibberellin and brassinosteroids, whereas OsXTR2 and OsXTR4 showed no clear response to these hormones
OsXTR1|XTH2	Os11g0539200	LOC_Os11g33270	BR	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	OsMDP1 deficiency resulted in enhanced expression of OsXTR1, which encodes xyloglucan endotransglycosylase, the cell-wall loosening enzyme necessary for cell elongation, and modulated expressions of multiple genes involved in cell signalling and gene transcription, indicating the key negative regulatory role of OsMDP1 in BR signalling
OsXTR1|XTH2	Os11g0539200	LOC_Os11g33270	cell elongation	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling	OsMDP1 deficiency resulted in enhanced expression of OsXTR1, which encodes xyloglucan endotransglycosylase, the cell-wall loosening enzyme necessary for cell elongation, and modulated expressions of multiple genes involved in cell signalling and gene transcription, indicating the key negative regulatory role of OsMDP1 in BR signalling
OsXTR1|XTH2	Os11g0539200	LOC_Os11g33270	height	Characterization of XET-related genes of rice	In three genetic mutants with abnormal heights, the expression of OsXTR1 and OsXTR3 correlated with the height of the mutants, whereas no such correlation was observed for OsXTR2 and OsXTR4
OsXTR1|XTH2	Os11g0539200	LOC_Os11g33270	brassinosteroid	Characterization of XET-related genes of rice	OsXTR1 and OsXTR3 were up-regulated by gibberellin and brassinosteroids, whereas OsXTR2 and OsXTR4 showed no clear response to these hormones
OsXXT1	Os03g0300000	LOC_Os03g18820	root	Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.	Furthermore, expression of the full-length coding sequence of OsXXT1 could complement the root hair defect, and slow growth and XyG synthesis in the Arabidopsis xxt1 xxt2 double mutant
OsXXT1	Os03g0300000	LOC_Os03g18820	root	Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.	Transgenic plants expressing the β-glucuronidase (GUS) reporter under the control of the OsXXT1 promoter displayed GUS expression in multiple tissues, most prominently in root epidermal cells
OsXXT1	Os03g0300000	LOC_Os03g18820	growth	Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.	Furthermore, expression of the full-length coding sequence of OsXXT1 could complement the root hair defect, and slow growth and XyG synthesis in the Arabidopsis xxt1 xxt2 double mutant
OsXXT1	Os03g0300000	LOC_Os03g18820	cell wall	Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.	These results demonstrate the importance of OsXXT1 in maintaining cell wall structure and tensile strength in rice, a typical grass species that contains relatively low XyG content in cell walls
OsXXT1	Os03g0300000	LOC_Os03g18820	root hair	Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.	Furthermore, expression of the full-length coding sequence of OsXXT1 could complement the root hair defect, and slow growth and XyG synthesis in the Arabidopsis xxt1 xxt2 double mutant
OsXXT1	Os03g0300000	LOC_Os03g18820	root epidermal cells	Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.	Transgenic plants expressing the β-glucuronidase (GUS) reporter under the control of the OsXXT1 promoter displayed GUS expression in multiple tissues, most prominently in root epidermal cells
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	root	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	RCN11 also mediates root aerenchyma formation under oxygen-deficient conditions and ABA sensitivity during seed germination
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	growth	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	) mutant reduced culm number11 (rcn11) showed that RCN11 controls growth of plants exposed to abnormal temperature, salinity and drought conditions
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	seed	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	RCN11 also mediates root aerenchyma formation under oxygen-deficient conditions and ABA sensitivity during seed germination
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	drought	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	) mutant reduced culm number11 (rcn11) showed that RCN11 controls growth of plants exposed to abnormal temperature, salinity and drought conditions
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	salinity	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	) mutant reduced culm number11 (rcn11) showed that RCN11 controls growth of plants exposed to abnormal temperature, salinity and drought conditions
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	seed germination	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	RCN11 also mediates root aerenchyma formation under oxygen-deficient conditions and ABA sensitivity during seed germination
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	abiotic stress	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	ABA	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	RCN11 also mediates root aerenchyma formation under oxygen-deficient conditions and ABA sensitivity during seed germination
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	culm	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	) mutant reduced culm number11 (rcn11) showed that RCN11 controls growth of plants exposed to abnormal temperature, salinity and drought conditions
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	biotic stress	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	ABA	The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	RCN11 also mediates root aerenchyma formation under oxygen-deficient conditions and ABA sensitivity during seed germination
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	seedlings	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	root	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	temperature	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Thus, rcn11 will shed new light on vegetative growth control under low temperature
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	growth	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	growth	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	The rcn1 rcn11 phenotype suggests that RCN11 acts on vegetative growth independent of RCN1/OsABCG5
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	growth	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Thus, rcn11 will shed new light on vegetative growth control under low temperature
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	shoot	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	development	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	vegetative	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	vegetative	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	The rcn1 rcn11 phenotype suggests that RCN11 acts on vegetative growth independent of RCN1/OsABCG5
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	vegetative	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Thus, rcn11 will shed new light on vegetative growth control under low temperature
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	root development	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	architecture	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	crown	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	crown root	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	lateral root	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	root number	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
OsXylT|RCN11	Os08g0503800	LOC_Os08g39380	shoot architecture	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
OsXYN1	Os03g0672900	LOC_Os03g47010	growth	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.	The findings that OsXyn1 is involved in plant cell wall deposition and regulates plant growth and development help shed light on the functions of the rice GH10 family
OsXYN1	Os03g0672900	LOC_Os03g47010	development	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.
OsXYN1	Os03g0672900	LOC_Os03g47010	development	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.	The findings that OsXyn1 is involved in plant cell wall deposition and regulates plant growth and development help shed light on the functions of the rice GH10 family
OsXYN1	Os03g0672900	LOC_Os03g47010	map-based cloning	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.	Map-based cloning of the ss1 mutant identified the candidate gene as OsXyn1 (LOC_03g47010), which encodes a xylanase-like protein belonging to the glycoside hydrolase 10 (GH10) family
OsXYN1	Os03g0672900	LOC_Os03g47010	plant growth	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.	The findings that OsXyn1 is involved in plant cell wall deposition and regulates plant growth and development help shed light on the functions of the rice GH10 family
OsXYN1	Os03g0672900	LOC_Os03g47010	cell wall	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.
OsXYN1	Os03g0672900	LOC_Os03g47010	cell wall	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.	The findings that OsXyn1 is involved in plant cell wall deposition and regulates plant growth and development help shed light on the functions of the rice GH10 family
OsXYN1	Os03g0672900	LOC_Os03g47010	plant development	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.	Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	floral	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice	Unlike the Arabidopsis YABBY genes, however, the OsYAB1 gene does not show polar expression pattern in the tissues of floral organs
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	floral	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice	Our transgenic plants that ectopically expressed OsYAB1 were normal during the vegetative growth period, but then showed abnormalities in their floral structures
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	flower	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice	RNA gel-blot analysis showed that the OsYAB1 gene is preferentially expressed in flowers
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	vascular bundle	Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1	OsYABBY1 is expressed in putative precursor cells of both the mestome sheath in the large vascular bundle and the abaxial sclerenchyma in the leaves
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	lemma	Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1	In the flower, OsYABBY1 is specifically expressed in the palea and lemma from their inception, and is confined to several cell layers of these organs in the later developmental stages
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	sheath	Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1	OsYABBY1 is expressed in putative precursor cells of both the mestome sheath in the large vascular bundle and the abaxial sclerenchyma in the leaves
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	flower	Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1	In the flower, OsYABBY1 is specifically expressed in the palea and lemma from their inception, and is confined to several cell layers of these organs in the later developmental stages
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	growth	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice	Our transgenic plants that ectopically expressed OsYAB1 were normal during the vegetative growth period, but then showed abnormalities in their floral structures
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	meristem	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice	These results suggest that OsYAB1 plays a major role in meristem development and maintenance of stamens and carpels, rather than in determining polarity
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	vegetative	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice	Our transgenic plants that ectopically expressed OsYAB1 were normal during the vegetative growth period, but then showed abnormalities in their floral structures
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	palea	Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1	In the flower, OsYABBY1 is specifically expressed in the palea and lemma from their inception, and is confined to several cell layers of these organs in the later developmental stages
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	stamen	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice	These results suggest that OsYAB1 plays a major role in meristem development and maintenance of stamens and carpels, rather than in determining polarity
OsYABBY1|OsYAB1	Os07g0160100	LOC_Os07g06620	stamen	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice
OsYABBY3|OsYAB4|TOB3	Os10g0508300	LOC_Os10g36420	development	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	 RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development
OsYABBY3|OsYAB4|TOB3	Os10g0508300	LOC_Os10g36420	development	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	 Furthermore, simultaneous knockdown of both TOB2 and TOB3 in tob1 affected not only spikelet, but also inflorescence development
OsYABBY3|OsYAB4|TOB3	Os10g0508300	LOC_Os10g36420	spikelet	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	 RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development
OsYABBY3|OsYAB4|TOB3	Os10g0508300	LOC_Os10g36420	inflorescence	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	 Furthermore, simultaneous knockdown of both TOB2 and TOB3 in tob1 affected not only spikelet, but also inflorescence development
OsYABBY3|OsYAB4|TOB3	Os10g0508300	LOC_Os10g36420	spikelet development	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	 RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development
OsYABBY3|OsYAB4|TOB3	Os10g0508300	LOC_Os10g36420	development	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of osyab4 tap-1 and osyab5 tap-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development
OsYABBY3|OsYAB4|TOB3	Os10g0508300	LOC_Os10g36420	spikelet	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of osyab4 tap-1 and osyab5 tap-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development
OsYABBY3|OsYAB4|TOB3	Os10g0508300	LOC_Os10g36420	panicle	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of osyab4 tap-1 and osyab5 tap-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development
OsYABBY3|OsYAB4|TOB3	Os10g0508300	LOC_Os10g36420	spikelet development	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of osyab4 tap-1 and osyab5 tap-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	meristem	A rice YABBY gene, OsYABBY4, preferentially expresses in developing vascular tissue	Beta-glucuronidase reporter assay and in situ analysis consistently revealed that OsYABBY4 was expressed in the meristems and developing vascular tissue of rice, predominantly in the phloem tissue, suggesting that the function of the rice gene is different from those of its counterparts in eudicots
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	growth	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	These data together suggest that OsYABBY4 serves as a DNA-binding intermediate protein for SLR1 and is associated with the GA signaling pathway regulating gene expression during plant growth and development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	development	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	These data together suggest that OsYABBY4 serves as a DNA-binding intermediate protein for SLR1 and is associated with the GA signaling pathway regulating gene expression during plant growth and development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	gibberellin	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	We report on an important role for OsYABBY4 in negative control of the expression of a GA biosynthetic gene by binding to the promoter region of the gibberellin 20-oxidase 2 gene (GA20ox2), which is a direct target of SLR1 (the sole DELLA protein negatively controlling GA responses in rice)
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	ga	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	We report on an important role for OsYABBY4 in negative control of the expression of a GA biosynthetic gene by binding to the promoter region of the gibberellin 20-oxidase 2 gene (GA20ox2), which is a direct target of SLR1 (the sole DELLA protein negatively controlling GA responses in rice)
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	ga	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	These data together suggest that OsYABBY4 serves as a DNA-binding intermediate protein for SLR1 and is associated with the GA signaling pathway regulating gene expression during plant growth and development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	Gibberellin	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	We report on an important role for OsYABBY4 in negative control of the expression of a GA biosynthetic gene by binding to the promoter region of the gibberellin 20-oxidase 2 gene (GA20ox2), which is a direct target of SLR1 (the sole DELLA protein negatively controlling GA responses in rice)
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	GA	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	We report on an important role for OsYABBY4 in negative control of the expression of a GA biosynthetic gene by binding to the promoter region of the gibberellin 20-oxidase 2 gene (GA20ox2), which is a direct target of SLR1 (the sole DELLA protein negatively controlling GA responses in rice)
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	GA	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	These data together suggest that OsYABBY4 serves as a DNA-binding intermediate protein for SLR1 and is associated with the GA signaling pathway regulating gene expression during plant growth and development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	GA biosynthetic	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	We report on an important role for OsYABBY4 in negative control of the expression of a GA biosynthetic gene by binding to the promoter region of the gibberellin 20-oxidase 2 gene (GA20ox2), which is a direct target of SLR1 (the sole DELLA protein negatively controlling GA responses in rice)
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	plant growth	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	These data together suggest that OsYABBY4 serves as a DNA-binding intermediate protein for SLR1 and is associated with the GA signaling pathway regulating gene expression during plant growth and development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	development	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	development	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	Furthermore, simultaneous knockdown of both TOB2 and TOB3 in tob1 affected not only spikelet, but also inflorescence development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	spikelet	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	inflorescence	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	Furthermore, simultaneous knockdown of both TOB2 and TOB3 in tob1 affected not only spikelet, but also inflorescence development
OsYABBY4|TOB2	Os02g0643200	LOC_Os02g42950	spikelet development	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	lemma	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet	Here, we show that mutation of the rice (Oryza sativa) gene TONGARI-BOUSHI1 (TOB1) results in pleiotropic phenotypes in spikelets, such as the formation of a cone-shaped organ instead of the lemma or palea, the development of two florets in a spikelet, or premature termination of the floret meristem, in addition to reduced growth of the lemma or palea and elongation of the awn
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	spikelet	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet	Here, we show that mutation of the rice (Oryza sativa) gene TONGARI-BOUSHI1 (TOB1) results in pleiotropic phenotypes in spikelets, such as the formation of a cone-shaped organ instead of the lemma or palea, the development of two florets in a spikelet, or premature termination of the floret meristem, in addition to reduced growth of the lemma or palea and elongation of the awn
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	spikelet	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet	No TOB1 expression is detected in the meristem, so TOB1 may act non-cell autonomously to maintain proper meristem organization and is therefore likely to play an important role in rice spikelet development
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	growth	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet	Here, we show that mutation of the rice (Oryza sativa) gene TONGARI-BOUSHI1 (TOB1) results in pleiotropic phenotypes in spikelets, such as the formation of a cone-shaped organ instead of the lemma or palea, the development of two florets in a spikelet, or premature termination of the floret meristem, in addition to reduced growth of the lemma or palea and elongation of the awn
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	meristem	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet	Here, we show that mutation of the rice (Oryza sativa) gene TONGARI-BOUSHI1 (TOB1) results in pleiotropic phenotypes in spikelets, such as the formation of a cone-shaped organ instead of the lemma or palea, the development of two florets in a spikelet, or premature termination of the floret meristem, in addition to reduced growth of the lemma or palea and elongation of the awn
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	meristem	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet	No TOB1 expression is detected in the meristem, so TOB1 may act non-cell autonomously to maintain proper meristem organization and is therefore likely to play an important role in rice spikelet development
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	flower	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet	TOB1 encodes a YABBY protein, which is closely related to FILAMENTOUS FLOWER in Arabidopsis thaliana, and is expressed in the lateral organ primordia without any patterns of polarization
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	palea	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet	Here, we show that mutation of the rice (Oryza sativa) gene TONGARI-BOUSHI1 (TOB1) results in pleiotropic phenotypes in spikelets, such as the formation of a cone-shaped organ instead of the lemma or palea, the development of two florets in a spikelet, or premature termination of the floret meristem, in addition to reduced growth of the lemma or palea and elongation of the awn
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	development	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	development	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	Furthermore, simultaneous knockdown of both TOB2 and TOB3 in tob1 affected not only spikelet, but also inflorescence development
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	spikelet	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	inflorescence	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	Furthermore, simultaneous knockdown of both TOB2 and TOB3 in tob1 affected not only spikelet, but also inflorescence development
OsYABBY5|OsYAB3|TOB1	Os04g0536300	LOC_Os04g45330	spikelet development	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development
OsYAF9	Os06g0137300	LOC_Os06g04580	development	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Here, we reported that OsYAF9 and OsSWC4, two subunits of SWR1 and NuA4 complexes, are involved in rice vegetative and reproductive development
OsYAF9	Os06g0137300	LOC_Os06g04580	pollen	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Loss of OsYAF9 resulted in reduced height, fewer tillers, fewer pollen grains, and defects in embryogenesis and seed filling
OsYAF9	Os06g0137300	LOC_Os06g04580	seed	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Loss of OsYAF9 resulted in reduced height, fewer tillers, fewer pollen grains, and defects in embryogenesis and seed filling
OsYAF9	Os06g0137300	LOC_Os06g04580	gibberellin	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsYAF9	Os06g0137300	LOC_Os06g04580	vegetative	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Here, we reported that OsYAF9 and OsSWC4, two subunits of SWR1 and NuA4 complexes, are involved in rice vegetative and reproductive development
OsYAF9	Os06g0137300	LOC_Os06g04580	reproductive	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Here, we reported that OsYAF9 and OsSWC4, two subunits of SWR1 and NuA4 complexes, are involved in rice vegetative and reproductive development
OsYAF9	Os06g0137300	LOC_Os06g04580	ga	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsYAF9	Os06g0137300	LOC_Os06g04580	ga	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	Z deposition and H4 acetylation at the GA biosynthesis genes with OsYAF9
OsYAF9	Os06g0137300	LOC_Os06g04580	cell elongation	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsYAF9	Os06g0137300	LOC_Os06g04580	height	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsYAF9	Os06g0137300	LOC_Os06g04580	reproductive development	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Here, we reported that OsYAF9 and OsSWC4, two subunits of SWR1 and NuA4 complexes, are involved in rice vegetative and reproductive development
OsYAF9	Os06g0137300	LOC_Os06g04580	Gibberellin	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsYAF9	Os06g0137300	LOC_Os06g04580	GA	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsYAF9	Os06g0137300	LOC_Os06g04580	GA	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	Z deposition and H4 acetylation at the GA biosynthesis genes with OsYAF9
OsYAF9	Os06g0137300	LOC_Os06g04580	 ga 	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsYAF9	Os06g0137300	LOC_Os06g04580	 ga 	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	Z deposition and H4 acetylation at the GA biosynthesis genes with OsYAF9
OsYAF9	Os06g0137300	LOC_Os06g04580	GA biosynthesis	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 The reduced height caused by OsYAF9 mutation and OsSWC4 knockdown was due to shorter internodes and defects in cell elongation, and this phenotype was rescued with gibberellin (GA) treatment, suggesting that both OsYAF9 and OsSWC4 are involved in the GA biosynthesis pathway
OsYAF9	Os06g0137300	LOC_Os06g04580	GA biosynthesis	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	Z deposition and H4 acetylation at the GA biosynthesis genes with OsYAF9
OsYAF9	Os06g0137300	LOC_Os06g04580	internode elongation	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.
OsYAF9	Os06g0137300	LOC_Os06g04580	internode elongation	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Together, our study provides insights into the mechanisms involving OsSWC4 and OsYAF9 forming a protein complex to promote rice internode elongation with H2A
OsYAF9	Os06g0137300	LOC_Os06g04580	seed filling	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	 Loss of OsYAF9 resulted in reduced height, fewer tillers, fewer pollen grains, and defects in embryogenesis and seed filling
OsYchF1	Os08g0199300	LOC_Os08g09940	defense	An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein	The finding that OsYchF1 and OsGAP1 are involved in plant defense response might shed light on the functional roles of YchF homologues in plants
OsYchF1	Os08g0199300	LOC_Os08g09940	defense response	An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein	The finding that OsYchF1 and OsGAP1 are involved in plant defense response might shed light on the functional roles of YchF homologues in plants
OsYchF1	Os08g0199300	LOC_Os08g09940	resistance	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Mutation of the noncanonical G4 motif of the OsYchF1 to the canonical sequence for GTP specificity precludes the binding/hydrolysis of ATP and prevents OsYchF1 from functioning as a negative regulator of plant-defense responses, while retaining its ability to bind/hydrolyze GTP and its function as a negative regulator of abiotic stress responses, demonstrating the specific role of ATP-binding/hydrolysis in disease resistance
OsYchF1	Os08g0199300	LOC_Os08g09940	abiotic stress	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.
OsYchF1	Os08g0199300	LOC_Os08g09940	abiotic stress	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Mutation of the noncanonical G4 motif of the OsYchF1 to the canonical sequence for GTP specificity precludes the binding/hydrolysis of ATP and prevents OsYchF1 from functioning as a negative regulator of plant-defense responses, while retaining its ability to bind/hydrolyze GTP and its function as a negative regulator of abiotic stress responses, demonstrating the specific role of ATP-binding/hydrolysis in disease resistance
OsYchF1	Os08g0199300	LOC_Os08g09940	defense response	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Mutation of the noncanonical G4 motif of the OsYchF1 to the canonical sequence for GTP specificity precludes the binding/hydrolysis of ATP and prevents OsYchF1 from functioning as a negative regulator of plant-defense responses, while retaining its ability to bind/hydrolyze GTP and its function as a negative regulator of abiotic stress responses, demonstrating the specific role of ATP-binding/hydrolysis in disease resistance
OsYchF1	Os08g0199300	LOC_Os08g09940	disease	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Mutation of the noncanonical G4 motif of the OsYchF1 to the canonical sequence for GTP specificity precludes the binding/hydrolysis of ATP and prevents OsYchF1 from functioning as a negative regulator of plant-defense responses, while retaining its ability to bind/hydrolyze GTP and its function as a negative regulator of abiotic stress responses, demonstrating the specific role of ATP-binding/hydrolysis in disease resistance
OsYchF1	Os08g0199300	LOC_Os08g09940	disease resistance	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Mutation of the noncanonical G4 motif of the OsYchF1 to the canonical sequence for GTP specificity precludes the binding/hydrolysis of ATP and prevents OsYchF1 from functioning as a negative regulator of plant-defense responses, while retaining its ability to bind/hydrolyze GTP and its function as a negative regulator of abiotic stress responses, demonstrating the specific role of ATP-binding/hydrolysis in disease resistance
OsYchF1	Os08g0199300	LOC_Os08g09940	stress	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.
OsYchF1	Os08g0199300	LOC_Os08g09940	stress	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Mutation of the noncanonical G4 motif of the OsYchF1 to the canonical sequence for GTP specificity precludes the binding/hydrolysis of ATP and prevents OsYchF1 from functioning as a negative regulator of plant-defense responses, while retaining its ability to bind/hydrolyze GTP and its function as a negative regulator of abiotic stress responses, demonstrating the specific role of ATP-binding/hydrolysis in disease resistance
OsYchF1	Os08g0199300	LOC_Os08g09940	biotic stress	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.
OsYchF1	Os08g0199300	LOC_Os08g09940	biotic stress	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Mutation of the noncanonical G4 motif of the OsYchF1 to the canonical sequence for GTP specificity precludes the binding/hydrolysis of ATP and prevents OsYchF1 from functioning as a negative regulator of plant-defense responses, while retaining its ability to bind/hydrolyze GTP and its function as a negative regulator of abiotic stress responses, demonstrating the specific role of ATP-binding/hydrolysis in disease resistance
OsYchF1	Os08g0199300	LOC_Os08g09940	stress response	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.
OsYchF1	Os08g0199300	LOC_Os08g09940	stress response	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Mutation of the noncanonical G4 motif of the OsYchF1 to the canonical sequence for GTP specificity precludes the binding/hydrolysis of ATP and prevents OsYchF1 from functioning as a negative regulator of plant-defense responses, while retaining its ability to bind/hydrolyze GTP and its function as a negative regulator of abiotic stress responses, demonstrating the specific role of ATP-binding/hydrolysis in disease resistance
OsYSL13	Os04g0524500	LOC_Os04g44300	leaf	OsYSL13 Is Involved in Iron Distribution in Rice.	OsYSL13 was highly expressed in leaves, especially in leaf blades, whereas its expression was induced by Fe deficiency both in roots and shoots
OsYSL13	Os04g0524500	LOC_Os04g44300	leaf	OsYSL13 Is Involved in Iron Distribution in Rice.	Metal measurement revealed that Fe concentrations were lower in the youngest leaf and higher in the older leaves of the osysl13 mutant under both Fe sufficiency and deficiency conditions, compared with the wild type and two complementation lines
OsYSL13	Os04g0524500	LOC_Os04g44300	plasma membrane	OsYSL13 Is Involved in Iron Distribution in Rice.	OsYSL13 was located in the plasma membrane
OsYSL13	Os04g0524500	LOC_Os04g44300	iron	OsYSL13 Is Involved in Iron Distribution in Rice.	OsYSL13 Is Involved in Iron Distribution in Rice.
OsYSL15	Os02g0650300	LOC_Os02g43410	transporter	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	These results strongly suggest that OsYSL15 is the dominant iron(III)-deoxymugineic acid transporter responsible for iron uptake from the rhizosphere and is also responsible for phloem transport of iron
OsYSL15	Os02g0650300	LOC_Os02g43410	transporter	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings
OsYSL15	Os02g0650300	LOC_Os02g43410	iron	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	Expression of OsYSL15 in root epidermis and stele was induced by iron deficiency and showed daily fluctuation
OsYSL15	Os02g0650300	LOC_Os02g43410	iron	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 restored a yeast mutant defective in iron uptake when supplied with iron(III)-deoxymugineic acid and transported iron(III)-deoxymugineic acid in Xenopus laevis oocytes
OsYSL15	Os02g0650300	LOC_Os02g43410	iron	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 promoter-beta-glucuronidase analysis revealed that OsYSL15 expression in roots was dominant in the epidermis/exodermis and phloem cells under conditions of iron deficiency and was detected only in phloem under iron sufficiency
OsYSL15	Os02g0650300	LOC_Os02g43410	iron	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	These results strongly suggest that OsYSL15 is the dominant iron(III)-deoxymugineic acid transporter responsible for iron uptake from the rhizosphere and is also responsible for phloem transport of iron
OsYSL15	Os02g0650300	LOC_Os02g43410	iron	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 knockdown seedlings showed severe arrest in germination and early growth and were rescued by high iron supply
OsYSL15	Os02g0650300	LOC_Os02g43410	iron	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	These results demonstrate that rice OsYSL15 plays a crucial role in iron homeostasis during the early stages of growth
OsYSL15	Os02g0650300	LOC_Os02g43410	iron	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings
OsYSL15	Os02g0650300	LOC_Os02g43410	seed	Disruption of OsYSL15 leads to iron inefficiency in rice plants	Two insertional osysl15 mutants exhibited chlorotic phenotypes under Fe deficiency and had reduced Fe concentrations in their shoots, roots, and seeds
OsYSL15	Os02g0650300	LOC_Os02g43410	seed	Disruption of OsYSL15 leads to iron inefficiency in rice plants	Overexpression of OsYSL15 increased the Fe concentration in leaves and seeds from transgenic plants
OsYSL15	Os02g0650300	LOC_Os02g43410	seed	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 was also expressed in flowers, developing seeds, and in the embryonic scutellar epithelial cells during seed germination
OsYSL15	Os02g0650300	LOC_Os02g43410	seed	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 knockdown seedlings showed severe arrest in germination and early growth and were rescued by high iron supply
OsYSL15	Os02g0650300	LOC_Os02g43410	seed	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings
OsYSL15	Os02g0650300	LOC_Os02g43410	flower	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 was also expressed in flowers, developing seeds, and in the embryonic scutellar epithelial cells during seed germination
OsYSL15	Os02g0650300	LOC_Os02g43410	seedling	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 knockdown seedlings showed severe arrest in germination and early growth and were rescued by high iron supply
OsYSL15	Os02g0650300	LOC_Os02g43410	seedling	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings
OsYSL15	Os02g0650300	LOC_Os02g43410	root	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	Expression of OsYSL15 in root epidermis and stele was induced by iron deficiency and showed daily fluctuation
OsYSL15	Os02g0650300	LOC_Os02g43410	root	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 promoter-beta-glucuronidase analysis revealed that OsYSL15 expression in roots was dominant in the epidermis/exodermis and phloem cells under conditions of iron deficiency and was detected only in phloem under iron sufficiency
OsYSL15	Os02g0650300	LOC_Os02g43410	root	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings
OsYSL15	Os02g0650300	LOC_Os02g43410	shoot	Disruption of OsYSL15 leads to iron inefficiency in rice plants	Two insertional osysl15 mutants exhibited chlorotic phenotypes under Fe deficiency and had reduced Fe concentrations in their shoots, roots, and seeds
OsYSL15	Os02g0650300	LOC_Os02g43410	transcription factor	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsYSL15	Os02g0650300	LOC_Os02g43410	root	Disruption of OsYSL15 leads to iron inefficiency in rice plants	The OsYSL15 promoter fusion to beta-glucuronidase showed that it was expressed in all root tissues when Fe was limited
OsYSL15	Os02g0650300	LOC_Os02g43410	root	Disruption of OsYSL15 leads to iron inefficiency in rice plants	Two insertional osysl15 mutants exhibited chlorotic phenotypes under Fe deficiency and had reduced Fe concentrations in their shoots, roots, and seeds
OsYSL15	Os02g0650300	LOC_Os02g43410	iron	Disruption of OsYSL15 leads to iron inefficiency in rice plants	We have characterized OsYSL15, one of the rice (Oryza sativa) YS1-like (YSL) genes that are strongly induced by iron (Fe) deficiency
OsYSL15	Os02g0650300	LOC_Os02g43410	iron	Disruption of OsYSL15 leads to iron inefficiency in rice plants	Disruption of OsYSL15 leads to iron inefficiency in rice plants
OsYSL15	Os02g0650300	LOC_Os02g43410	homeostasis	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	These results demonstrate that rice OsYSL15 plays a crucial role in iron homeostasis during the early stages of growth
OsYSL15	Os02g0650300	LOC_Os02g43410	seed germination	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 was also expressed in flowers, developing seeds, and in the embryonic scutellar epithelial cells during seed germination
OsYSL15	Os02g0650300	LOC_Os02g43410	growth	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	OsYSL15 knockdown seedlings showed severe arrest in germination and early growth and were rescued by high iron supply
OsYSL15	Os02g0650300	LOC_Os02g43410	growth	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	These results demonstrate that rice OsYSL15 plays a crucial role in iron homeostasis during the early stages of growth
OsYSL15	Os02g0650300	LOC_Os02g43410	growth	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings
OsYSL15	Os02g0650300	LOC_Os02g43410	ethylene	Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa	RNA interference of OsIRO2 in transgenic rice showed that ethylene acted via this transcription factor to induce the expression of OsNAS1, OsNAS2, OsYSL15, and OsIRT1
OsYSL16	Os04g0542800	LOC_Os04g45900	root	OsYSL16 plays a role in the allocation of iron	Expression of the OsYSL16 promoter fused to the beta-glucuronidase gene showed that OsYSL16 is expressed in the root epidermis and vascular bundles of whole plants
OsYSL16	Os04g0542800	LOC_Os04g45900	iron	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency	Our results suggest that the function of OsYSL16 in Fe-homeostasis is to enable distribution of iron within a plant
OsYSL16	Os04g0542800	LOC_Os04g45900	iron	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency
OsYSL16	Os04g0542800	LOC_Os04g45900	seed	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency	During germination, the rate of Fe-utilization from the seeds was higher in the OsYSL16 activation lines than in the WT seeds
OsYSL16	Os04g0542800	LOC_Os04g45900	leaf	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency	Promoter fusions of OsYSL16 to beta-glucuronidase (GUS) showed that OsYSL16 was highly expressed in the vascular tissues of the root, leaf, and spikelet, and in leaf mesophyll cells
OsYSL16	Os04g0542800	LOC_Os04g45900	iron	OsYSL16 plays a role in the allocation of iron	OsYSL16 has 85 % similarity to both OsYSL15 and the iron(II)-nicotianamine transporter OsYSL2
OsYSL16	Os04g0542800	LOC_Os04g45900	iron	OsYSL16 plays a role in the allocation of iron	In the present study, we show that OsYSL16 functionally complemented a yeast mutant defective in iron uptake when grown on medium containing iron(III)-deoxymugineic acid, but not when grown on medium containing iron(II)-nicotianamine
OsYSL16	Os04g0542800	LOC_Os04g45900	iron	OsYSL16 plays a role in the allocation of iron	OsYSL16-knockdown seedlings were smaller than wild-type seedlings when only iron(III)chloride was supplied as an iron source
OsYSL16	Os04g0542800	LOC_Os04g45900	iron	OsYSL16 plays a role in the allocation of iron	The iron concentration in shoots of OsYSL16-knockdown plants was similar to that of the wild type; however, they showed more severe chlorosis than wild-type plants under iron-deficient conditions
OsYSL16	Os04g0542800	LOC_Os04g45900	iron	OsYSL16 plays a role in the allocation of iron	Furthermore, OsYSL16-knockdown plants accumulated more iron in the vascular bundles of the leaves
OsYSL16	Os04g0542800	LOC_Os04g45900	iron	OsYSL16 plays a role in the allocation of iron	Our results suggest that OsYSL16 plays a role in the allocation of iron(III)-deoxymugineic acid via the vascular bundles
OsYSL16	Os04g0542800	LOC_Os04g45900	iron	OsYSL16 plays a role in the allocation of iron	OsYSL16 plays a role in the allocation of iron
OsYSL16	Os04g0542800	LOC_Os04g45900	vascular bundle	OsYSL16 plays a role in the allocation of iron	Furthermore, OsYSL16-knockdown plants accumulated more iron in the vascular bundles of the leaves
OsYSL16	Os04g0542800	LOC_Os04g45900	vascular bundle	OsYSL16 plays a role in the allocation of iron	Expression of the OsYSL16 promoter fused to the beta-glucuronidase gene showed that OsYSL16 is expressed in the root epidermis and vascular bundles of whole plants
OsYSL16	Os04g0542800	LOC_Os04g45900	vascular bundle	OsYSL16 plays a role in the allocation of iron	Our results suggest that OsYSL16 plays a role in the allocation of iron(III)-deoxymugineic acid via the vascular bundles
OsYSL16	Os04g0542800	LOC_Os04g45900	transporter	OsYSL16 plays a role in the allocation of iron	OsYSL16 has 85 % similarity to both OsYSL15 and the iron(II)-nicotianamine transporter OsYSL2
OsYSL16	Os04g0542800	LOC_Os04g45900	spikelet	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency	Promoter fusions of OsYSL16 to beta-glucuronidase (GUS) showed that OsYSL16 was highly expressed in the vascular tissues of the root, leaf, and spikelet, and in leaf mesophyll cells
OsYSL16	Os04g0542800	LOC_Os04g45900	root	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency	Promoter fusions of OsYSL16 to beta-glucuronidase (GUS) showed that OsYSL16 was highly expressed in the vascular tissues of the root, leaf, and spikelet, and in leaf mesophyll cells
OsYSL16	Os04g0542800	LOC_Os04g45900	seedling	OsYSL16 plays a role in the allocation of iron	OsYSL16-knockdown seedlings were smaller than wild-type seedlings when only iron(III)chloride was supplied as an iron source
OsYSL16	Os04g0542800	LOC_Os04g45900	homeostasis	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency	Our results suggest that the function of OsYSL16 in Fe-homeostasis is to enable distribution of iron within a plant
OsYSL16	Os04g0542800	LOC_Os04g45900	shoot	OsYSL16 plays a role in the allocation of iron	The iron concentration in shoots of OsYSL16-knockdown plants was similar to that of the wild type; however, they showed more severe chlorosis than wild-type plants under iron-deficient conditions
OsYSL16	Os04g0542800	LOC_Os04g45900	shoot	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency	The Fe concentration in shoots was also higher in the OsYSL16 activation lines than in the WT
OsYSL16	Os04g0542800	LOC_Os04g45900	vascular bundle	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	GUS staining of transgenic rice carrying OsYSL16 promoter-GUS showed that OsYSL16 was mainly expressed in vascular bundles of rachilla as well as palea and lemma
OsYSL16	Os04g0542800	LOC_Os04g45900	vascular bundle	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	Our results indicate that OsYSL16 expressed in the vascular bundles of rachilla is important for preferential distribution of Cu to the stamens, while OsYSL16 in vascular bundles of palea and lemma is involved in Cu redistribution under Cu-limited conditions in rice
OsYSL16	Os04g0542800	LOC_Os04g45900	pollen	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	osysl16 mutant showed low pollen germination, but this was rescued by addition of Cu in the medium
OsYSL16	Os04g0542800	LOC_Os04g45900	floral	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.
OsYSL16	Os04g0542800	LOC_Os04g45900	palea	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	GUS staining of transgenic rice carrying OsYSL16 promoter-GUS showed that OsYSL16 was mainly expressed in vascular bundles of rachilla as well as palea and lemma
OsYSL16	Os04g0542800	LOC_Os04g45900	palea	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	Knockout of OsYSL16 resulted in decreased Cu distribution to the stamens, but increased distribution to the palea and lemma
OsYSL16	Os04g0542800	LOC_Os04g45900	palea	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	Furthermore, we found that redistribution of Cu from palea and lemma was impaired in osysl16 mutant after exposure to Cu-free solution
OsYSL16	Os04g0542800	LOC_Os04g45900	palea	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	Our results indicate that OsYSL16 expressed in the vascular bundles of rachilla is important for preferential distribution of Cu to the stamens, while OsYSL16 in vascular bundles of palea and lemma is involved in Cu redistribution under Cu-limited conditions in rice
OsYSL16	Os04g0542800	LOC_Os04g45900	lemma	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	GUS staining of transgenic rice carrying OsYSL16 promoter-GUS showed that OsYSL16 was mainly expressed in vascular bundles of rachilla as well as palea and lemma
OsYSL16	Os04g0542800	LOC_Os04g45900	lemma	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	Knockout of OsYSL16 resulted in decreased Cu distribution to the stamens, but increased distribution to the palea and lemma
OsYSL16	Os04g0542800	LOC_Os04g45900	lemma	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	Furthermore, we found that redistribution of Cu from palea and lemma was impaired in osysl16 mutant after exposure to Cu-free solution
OsYSL16	Os04g0542800	LOC_Os04g45900	lemma	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	Our results indicate that OsYSL16 expressed in the vascular bundles of rachilla is important for preferential distribution of Cu to the stamens, while OsYSL16 in vascular bundles of palea and lemma is involved in Cu redistribution under Cu-limited conditions in rice
OsYSL16	Os04g0542800	LOC_Os04g45900	floral organ	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.
OsYSL18	Os01g0829900	LOC_Os01g61390	lamina	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	In vegetative organs, OsYSL18 was specifically expressed in lamina joints, the inner cortex of crown roots, and phloem parenchyma and companion cells at the basal part of every leaf sheath
OsYSL18	Os01g0829900	LOC_Os01g61390	lamina	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints
OsYSL18	Os01g0829900	LOC_Os01g61390	zinc	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	Electrophysiological measurements using Xenopus laevis oocytes showed that OsYSL18 transports iron(III)-deoxymugineic acid, but not iron(II)-nicotianamine, zinc(II)-deoxymugineic acid, or zinc(II)-nicotianamine
OsYSL18	Os01g0829900	LOC_Os01g61390	sheath	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	In vegetative organs, OsYSL18 was specifically expressed in lamina joints, the inner cortex of crown roots, and phloem parenchyma and companion cells at the basal part of every leaf sheath
OsYSL18	Os01g0829900	LOC_Os01g61390	pollen	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	OsYSL18 promoter-beta-glucuronidase (GUS) analysis revealed that OsYSL18 was expressed in reproductive organs including the pollen tube
OsYSL18	Os01g0829900	LOC_Os01g61390	crown root	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	In vegetative organs, OsYSL18 was specifically expressed in lamina joints, the inner cortex of crown roots, and phloem parenchyma and companion cells at the basal part of every leaf sheath
OsYSL18	Os01g0829900	LOC_Os01g61390	flower	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	Reverse transcriptase PCR analysis revealed more OsYSL18 transcripts in flowers than in shoots or roots
OsYSL18	Os01g0829900	LOC_Os01g61390	leaf	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	In vegetative organs, OsYSL18 was specifically expressed in lamina joints, the inner cortex of crown roots, and phloem parenchyma and companion cells at the basal part of every leaf sheath
OsYSL18	Os01g0829900	LOC_Os01g61390	iron	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	Electrophysiological measurements using Xenopus laevis oocytes showed that OsYSL18 transports iron(III)-deoxymugineic acid, but not iron(II)-nicotianamine, zinc(II)-deoxymugineic acid, or zinc(II)-nicotianamine
OsYSL18	Os01g0829900	LOC_Os01g61390	iron	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	These results suggest that OsYSL18 is an iron-phytosiderophore transporter involved in the translocation of iron in reproductive organs and phloem in joints
OsYSL18	Os01g0829900	LOC_Os01g61390	iron	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints
OsYSL18	Os01g0829900	LOC_Os01g61390	root	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	Reverse transcriptase PCR analysis revealed more OsYSL18 transcripts in flowers than in shoots or roots
OsYSL18	Os01g0829900	LOC_Os01g61390	root	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	In vegetative organs, OsYSL18 was specifically expressed in lamina joints, the inner cortex of crown roots, and phloem parenchyma and companion cells at the basal part of every leaf sheath
OsYSL18	Os01g0829900	LOC_Os01g61390	shoot	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	Reverse transcriptase PCR analysis revealed more OsYSL18 transcripts in flowers than in shoots or roots
OsYSL18	Os01g0829900	LOC_Os01g61390	vegetative	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	In vegetative organs, OsYSL18 was specifically expressed in lamina joints, the inner cortex of crown roots, and phloem parenchyma and companion cells at the basal part of every leaf sheath
OsYSL18	Os01g0829900	LOC_Os01g61390	reproductive	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	OsYSL18 promoter-beta-glucuronidase (GUS) analysis revealed that OsYSL18 was expressed in reproductive organs including the pollen tube
OsYSL18	Os01g0829900	LOC_Os01g61390	reproductive	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	These results suggest that OsYSL18 is an iron-phytosiderophore transporter involved in the translocation of iron in reproductive organs and phloem in joints
OsYSL18	Os01g0829900	LOC_Os01g61390	reproductive	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints
OsYSL18	Os01g0829900	LOC_Os01g61390	crown	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	In vegetative organs, OsYSL18 was specifically expressed in lamina joints, the inner cortex of crown roots, and phloem parenchyma and companion cells at the basal part of every leaf sheath
OsYSL18	Os01g0829900	LOC_Os01g61390	transporter	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	These results suggest that OsYSL18 is an iron-phytosiderophore transporter involved in the translocation of iron in reproductive organs and phloem in joints
OsYSL18	Os01g0829900	LOC_Os01g61390	transporter	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	Iron biofortification in rice by the introduction of multiple genes involved in iron nutrition	To address the problem of iron-deficiency anemia, one of the most prevalent human micronutrient deficiencies globally, iron-biofortified rice was produced using three transgenic approaches: by enhancing iron storage in grains via expression of the iron storage protein ferritin using endosperm-specific promoters, enhancing iron translocation through overproduction of the natural metal chelator nicotianamine, and enhancing iron flux into the endosperm by means of iron(II)-nicotianamine transporter OsYSL2 expression under the control of an endosperm-specific promoter and sucrose transporter promoter
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	transporter	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	These results suggest that OsYSL2 is a rice metal-NA transporter that is responsible for the phloem transport of iron and manganese, including the translocation of iron and manganese into the grain
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	transporter	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	grain	Iron biofortification in rice by the introduction of multiple genes involved in iron nutrition	To address the problem of iron-deficiency anemia, one of the most prevalent human micronutrient deficiencies globally, iron-biofortified rice was produced using three transgenic approaches: by enhancing iron storage in grains via expression of the iron storage protein ferritin using endosperm-specific promoters, enhancing iron translocation through overproduction of the natural metal chelator nicotianamine, and enhancing iron flux into the endosperm by means of iron(II)-nicotianamine transporter OsYSL2 expression under the control of an endosperm-specific promoter and sucrose transporter promoter
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	transporter	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	We previously isolated OsYSL2, a functional iron [Fe(II)]- and manganese [Mn(II)]-nicotianamine complex transporter that is expressed in phloem cells and developing seeds
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	transporter	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	Furthermore, when OsYSL2 expression was driven by the sucrose transporter promoter, the Fe concentration in the polished rice was up to 4
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	transporter	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	These results indicate that the altered expression of OsYSL2 changes the localization of Fe, and that OsYSL2 is a critical Fe-nicotianamine transporter important for Fe translocation, especially in the shoots and endosperm
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	transporter	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	root	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	Of particular interest was OsYSL2, the transcripts of which were not detected in the roots of either iron-sufficient or iron-deficient plants, but dramatic expression was induced in the leaves by iron deficiency
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	root	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	Promoter:beta-glucuronidase (GUS) analysis revealed that OsYSL2 was expressed in companion cells in iron-sufficient roots
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	transporter	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	Several genes up-regulated by iron deficiency, including the Fe(II)-nicotianamine transporter gene OsYSL2, were less induced by iron deficiency in the RNAi rice of IDEF2, suggesting that IDEF2 is involved in the regulation of these genes
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	manganese	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	We previously isolated OsYSL2, a functional iron [Fe(II)]- and manganese [Mn(II)]-nicotianamine complex transporter that is expressed in phloem cells and developing seeds
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	manganese	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	vegetative	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	At the vegetative stage in an OsYSL2i line, the Fe and Mn concentrations were decreased in the shoots, and the Fe concentration was increased in the roots
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	grain	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	These results suggest that OsYSL2 is a rice metal-NA transporter that is responsible for the phloem transport of iron and manganese, including the translocation of iron and manganese into the grain
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	We previously isolated OsYSL2, a functional iron [Fe(II)]- and manganese [Mn(II)]-nicotianamine complex transporter that is expressed in phloem cells and developing seeds
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	transporter	Iron biofortification in rice by the introduction of multiple genes involved in iron nutrition	To address the problem of iron-deficiency anemia, one of the most prevalent human micronutrient deficiencies globally, iron-biofortified rice was produced using three transgenic approaches: by enhancing iron storage in grains via expression of the iron storage protein ferritin using endosperm-specific promoters, enhancing iron translocation through overproduction of the natural metal chelator nicotianamine, and enhancing iron flux into the endosperm by means of iron(II)-nicotianamine transporter OsYSL2 expression under the control of an endosperm-specific promoter and sucrose transporter promoter
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	endosperm	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	The Fe and Mn concentrations were decreased in the seeds of OsYSL2i, especially in the endosperm
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	endosperm	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	These results indicate that the altered expression of OsYSL2 changes the localization of Fe, and that OsYSL2 is a critical Fe-nicotianamine transporter important for Fe translocation, especially in the shoots and endosperm
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	root	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	At the vegetative stage in an OsYSL2i line, the Fe and Mn concentrations were decreased in the shoots, and the Fe concentration was increased in the roots
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	root	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	Moreover, the Fe concentration in OXOsYSL2 was lower in the seeds and shoots, but higher in the roots, compared with the wild type
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	manganese	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	Electrophysiological measurements using Xenopus laevis oocytes showed that OsYSL2 transported iron(II)-nicotianamine (NA) and manganese(II)-NA, but did not transport iron(III)-phyosiderophore
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	manganese	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	These results suggest that OsYSL2 is a rice metal-NA transporter that is responsible for the phloem transport of iron and manganese, including the translocation of iron and manganese into the grain
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	shoot	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	At the vegetative stage in an OsYSL2i line, the Fe and Mn concentrations were decreased in the shoots, and the Fe concentration was increased in the roots
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	shoot	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	At the reproductive stage, positron-emitting tracer imaging system analysis revealed that Fe translocation to the shoots and seeds was suppressed in OsYSL2i
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	shoot	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	Moreover, the Fe concentration in OXOsYSL2 was lower in the seeds and shoots, but higher in the roots, compared with the wild type
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	shoot	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	These results indicate that the altered expression of OsYSL2 changes the localization of Fe, and that OsYSL2 is a critical Fe-nicotianamine transporter important for Fe translocation, especially in the shoots and endosperm
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	endosperm	Iron biofortification in rice by the introduction of multiple genes involved in iron nutrition	To address the problem of iron-deficiency anemia, one of the most prevalent human micronutrient deficiencies globally, iron-biofortified rice was produced using three transgenic approaches: by enhancing iron storage in grains via expression of the iron storage protein ferritin using endosperm-specific promoters, enhancing iron translocation through overproduction of the natural metal chelator nicotianamine, and enhancing iron flux into the endosperm by means of iron(II)-nicotianamine transporter OsYSL2 expression under the control of an endosperm-specific promoter and sucrose transporter promoter
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	seed	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	We previously isolated OsYSL2, a functional iron [Fe(II)]- and manganese [Mn(II)]-nicotianamine complex transporter that is expressed in phloem cells and developing seeds
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	seed	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	At the reproductive stage, positron-emitting tracer imaging system analysis revealed that Fe translocation to the shoots and seeds was suppressed in OsYSL2i
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	seed	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	The Fe and Mn concentrations were decreased in the seeds of OsYSL2i, especially in the endosperm
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	seed	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	Moreover, the Fe concentration in OXOsYSL2 was lower in the seeds and shoots, but higher in the roots, compared with the wild type
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants	Several genes up-regulated by iron deficiency, including the Fe(II)-nicotianamine transporter gene OsYSL2, were less induced by iron deficiency in the RNAi rice of IDEF2, suggesting that IDEF2 is involved in the regulation of these genes
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	seed	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	Strong OsYSL2 promoter activity was also detected in developing seeds
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	Of particular interest was OsYSL2, the transcripts of which were not detected in the roots of either iron-sufficient or iron-deficient plants, but dramatic expression was induced in the leaves by iron deficiency
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	Promoter:beta-glucuronidase (GUS) analysis revealed that OsYSL2 was expressed in companion cells in iron-sufficient roots
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	In iron-deficient leaves, the OsYSL2 promoter was active in all tissues with particularly strong GUS activity evident in companion cells
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	The phloem-specific expression of the OsYSL2 promoter suggests that OsYSL2 is involved in the phloem transport of iron
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	Electrophysiological measurements using Xenopus laevis oocytes showed that OsYSL2 transported iron(II)-nicotianamine (NA) and manganese(II)-NA, but did not transport iron(III)-phyosiderophore
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	These results suggest that OsYSL2 is a rice metal-NA transporter that is responsible for the phloem transport of iron and manganese, including the translocation of iron and manganese into the grain
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	iron	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	reproductive	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese	At the reproductive stage, positron-emitting tracer imaging system analysis revealed that Fe translocation to the shoots and seeds was suppressed in OsYSL2i
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	transporter	CF1 reduces grain-cadmium levels in rice (Oryza sativa).	 CF1 is allelic to the metal transporter OsYSL2, which transports Fe from the roots to the shoots
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	metal transport	CF1 reduces grain-cadmium levels in rice (Oryza sativa).	 CF1 is allelic to the metal transporter OsYSL2, which transports Fe from the roots to the shoots
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	Fe	CF1 reduces grain-cadmium levels in rice (Oryza sativa).	 CF1 is allelic to the metal transporter OsYSL2, which transports Fe from the roots to the shoots
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	Fe	CF1 reduces grain-cadmium levels in rice (Oryza sativa).	 Further analysis showed that high expression levels of CF1 improve Fe nutrition in the shoots, subsequently inhibiting Cd uptake by systemically inhibiting expression of the main Cd uptake gene OsNramp5 in the roots
OsYSL2|CF1	Os02g0649900	LOC_Os02g43370	Fe	CF1 reduces grain-cadmium levels in rice (Oryza sativa).	 Compared with the CF1 allele from &#x27;02428&#x27; (CF1(02428) ), higher expression levels of CF1 from &#x27;TQ&#x27; (CF1(TQ) ) increased the Fe contents and decreased Cd levels in rice grains
OsYSL6	Os04g0390500	LOC_Os04g32050	manganese	OsYSL6 is involved in the detoxification of excess manganese in rice	Knockout of OsYSL6 resulted in decreased growth of both roots and shoots only in the high-manganese (Mn) condition
OsYSL6	Os04g0390500	LOC_Os04g32050	manganese	OsYSL6 is involved in the detoxification of excess manganese in rice	OsYSL6 is involved in the detoxification of excess manganese in rice
OsYSL6	Os04g0390500	LOC_Os04g32050	transporter	OsYSL6 is involved in the detoxification of excess manganese in rice	Taken together, our results suggest that OsYSL6 is a Mn-nicotianamine transporter that is required for the detoxification of excess Mn in rice
OsYSL6	Os04g0390500	LOC_Os04g32050	shoot	OsYSL6 is involved in the detoxification of excess manganese in rice	Knockout of OsYSL6 resulted in decreased growth of both roots and shoots only in the high-manganese (Mn) condition
OsYSL6	Os04g0390500	LOC_Os04g32050	shoot	OsYSL6 is involved in the detoxification of excess manganese in rice	OsYSL6 was constitutively expressed in both the shoots and roots, and the expression level was not affected by either deficiency or toxicity of various metals
OsYSL6	Os04g0390500	LOC_Os04g32050	shoot	OsYSL6 is involved in the detoxification of excess manganese in rice	Analysis with OsYSL6 promoter-green fluorescent protein transgenic rice revealed that OsYSL6 was expressed in all cells of both the roots and shoots
OsYSL6	Os04g0390500	LOC_Os04g32050	growth	OsYSL6 is involved in the detoxification of excess manganese in rice	Knockout of OsYSL6 resulted in decreased growth of both roots and shoots only in the high-manganese (Mn) condition
OsYSL6	Os04g0390500	LOC_Os04g32050	root	OsYSL6 is involved in the detoxification of excess manganese in rice	Knockout of OsYSL6 resulted in decreased growth of both roots and shoots only in the high-manganese (Mn) condition
OsYSL6	Os04g0390500	LOC_Os04g32050	root	OsYSL6 is involved in the detoxification of excess manganese in rice	OsYSL6 was constitutively expressed in both the shoots and roots, and the expression level was not affected by either deficiency or toxicity of various metals
OsYSL6	Os04g0390500	LOC_Os04g32050	root	OsYSL6 is involved in the detoxification of excess manganese in rice	Analysis with OsYSL6 promoter-green fluorescent protein transgenic rice revealed that OsYSL6 was expressed in all cells of both the roots and shoots
OsYSL9	Os04g0542200	LOC_Os04g45860	endosperm	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	Rice OsYSL9 is a novel transporter for Fe(II)-nicotianamine and Fe(III)-deoxymugineic acid that is responsible for internal iron transport, especially from endosperm to embryo in developing seeds
OsYSL9	Os04g0542200	LOC_Os04g45860	endosperm	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	At the grain-filling stage, OsYSL9 expression was strongly and transiently induced in the scutellum of the embryo and in endosperm cells surrounding the embryo
OsYSL9	Os04g0542200	LOC_Os04g45860	endosperm	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	These results suggested that OsYSL9 is involved in iron translocation within plant parts and particularly iron translocation from endosperm to embryo in developing seeds
OsYSL9	Os04g0542200	LOC_Os04g45860	transporter	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.
OsYSL9	Os04g0542200	LOC_Os04g45860	transporter	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	Rice OsYSL9 is a novel transporter for Fe(II)-nicotianamine and Fe(III)-deoxymugineic acid that is responsible for internal iron transport, especially from endosperm to embryo in developing seeds
OsYSL9	Os04g0542200	LOC_Os04g45860	plasma membrane	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	In the present report, we showed that OsYSL9 localizes mainly to the plasma membrane and transports both iron(II)-nicotianamine and iron(III)-deoxymugineic acid into the cell
OsYSL9	Os04g0542200	LOC_Os04g45860	iron	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.
OsYSL9	Os04g0542200	LOC_Os04g45860	iron	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	Rice OsYSL9 is a novel transporter for Fe(II)-nicotianamine and Fe(III)-deoxymugineic acid that is responsible for internal iron transport, especially from endosperm to embryo in developing seeds
OsYSL9	Os04g0542200	LOC_Os04g45860	iron	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	Expression of OsYSL9 was induced in the roots but repressed in the nonjuvenile leaves in response to iron deficiency
OsYSL9	Os04g0542200	LOC_Os04g45860	iron	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	These results suggested that OsYSL9 is involved in iron translocation within plant parts and particularly iron translocation from endosperm to embryo in developing seeds
OsYSL9	Os04g0542200	LOC_Os04g45860	grain-filling	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	At the grain-filling stage, OsYSL9 expression was strongly and transiently induced in the scutellum of the embryo and in endosperm cells surrounding the embryo
OsYUC11	Os12g0189500	LOC_Os12g08780	grain	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development
OsYUC11	Os12g0189500	LOC_Os12g08780	starch	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development
OsYUC11	Os12g0189500	LOC_Os12g08780	iaa	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	The increase in IAA content was strongly correlated with the expression of putative IAA biosynthesis genes, OsYUC9, OsYUC11 and OsTAR1, measured by quantitative reverse transcriptase polymerase chain reaction
OsYUC11	Os12g0189500	LOC_Os12g08780	iaa	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development
OsYUC11	Os12g0189500	LOC_Os12g08780	endosperm	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	All three genes were expressed in endosperm; expression of OsYUC11 appeared to be confined to endosperm tissue
OsYUC11	Os12g0189500	LOC_Os12g08780	auxin	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells 	 Suppression of RGB1 expression also resulted in the lower auxin content in grains, which was correlated with the lower expression of OsNF-YB1 and OsYUC11 during grain filling stage
OsYUC11	Os12g0189500	LOC_Os12g08780	auxin	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells 	 OsNF-YB1, which acts as a key downstream effector of RGB1, interacts directly with the promoter of OsYUC11 and stimulates the OsYUC11 expression, thereby regulating auxin biosynthesis and starch accumulation and grain size
OsYUC11	Os12g0189500	LOC_Os12g08780	grain	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells 	 Suppression of RGB1 expression also resulted in the lower auxin content in grains, which was correlated with the lower expression of OsNF-YB1 and OsYUC11 during grain filling stage
OsYUC11	Os12g0189500	LOC_Os12g08780	grain	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells 	 OsNF-YB1, which acts as a key downstream effector of RGB1, interacts directly with the promoter of OsYUC11 and stimulates the OsYUC11 expression, thereby regulating auxin biosynthesis and starch accumulation and grain size
OsYUC11	Os12g0189500	LOC_Os12g08780	starch	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells 	 OsNF-YB1, which acts as a key downstream effector of RGB1, interacts directly with the promoter of OsYUC11 and stimulates the OsYUC11 expression, thereby regulating auxin biosynthesis and starch accumulation and grain size
OsYUC11	Os12g0189500	LOC_Os12g08780	grain size	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells 	 OsNF-YB1, which acts as a key downstream effector of RGB1, interacts directly with the promoter of OsYUC11 and stimulates the OsYUC11 expression, thereby regulating auxin biosynthesis and starch accumulation and grain size
OsYUC11	Os12g0189500	LOC_Os12g08780	grain filling	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells 	 Suppression of RGB1 expression also resulted in the lower auxin content in grains, which was correlated with the lower expression of OsNF-YB1 and OsYUC11 during grain filling stage
OsYUC11	Os12g0189500	LOC_Os12g08780	auxin biosynthesis	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on OsYUC11-Mediated Auxin Biosynthesis in Rice Endosperm Cells 	 OsNF-YB1, which acts as a key downstream effector of RGB1, interacts directly with the promoter of OsYUC11 and stimulates the OsYUC11 expression, thereby regulating auxin biosynthesis and starch accumulation and grain size
OsYUC11	Os12g0189500	LOC_Os12g08780	transcription factor	OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice	 A rice transcription factor (TF) yeast library was screened, and 41 TFs that potentially bind to the OsYUC11 promoter were identified, of which OsNF-YB1, a member of the nuclear factor Y family, is predominantly expressed in the endosperm
OsYUC11	Os12g0189500	LOC_Os12g08780	auxin	OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice	 Here, we described rice YUCCA (YUC) flavin-containing monooxygenase encoding gene OsYUC11 as a key contributor to auxin biosynthesis in rice (Oryza sativa) endosperm
OsYUC11	Os12g0189500	LOC_Os12g08780	seed	OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice	 Both osyuc11 and osnf-yb1 mutants exhibited reduced seed size and increased chalkiness, accompanied by a reduction in indole-3-acetic acid biosynthesis
OsYUC11	Os12g0189500	LOC_Os12g08780	endosperm	OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice	 Here, we described rice YUCCA (YUC) flavin-containing monooxygenase encoding gene OsYUC11 as a key contributor to auxin biosynthesis in rice (Oryza sativa) endosperm
OsYUC11	Os12g0189500	LOC_Os12g08780	endosperm	OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice	 A rice transcription factor (TF) yeast library was screened, and 41 TFs that potentially bind to the OsYUC11 promoter were identified, of which OsNF-YB1, a member of the nuclear factor Y family, is predominantly expressed in the endosperm
OsYUC11	Os12g0189500	LOC_Os12g08780	endosperm	OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice	 We also found that OsYUC11 was a dynamically imprinted gene that predominantly expressed the paternal allele in the endosperm up to 10 d after fertilization (DAF) but then became a non-imprinted gene at 15 DAF
OsYUC11	Os12g0189500	LOC_Os12g08780	seed size	OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice	 Both osyuc11 and osnf-yb1 mutants exhibited reduced seed size and increased chalkiness, accompanied by a reduction in indole-3-acetic acid biosynthesis
OsYUC11	Os12g0189500	LOC_Os12g08780	auxin biosynthesis	OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice	 Here, we described rice YUCCA (YUC) flavin-containing monooxygenase encoding gene OsYUC11 as a key contributor to auxin biosynthesis in rice (Oryza sativa) endosperm
OsYUC11	Os12g0189500	LOC_Os12g08780	iaa	Light intensity-mediated auxin homeostasis in spikelets links carbohydrate metabolism enzymes with grain filling rate in rice.	 Interestingly, under LL, the expression of OsYUC11 was significantly downregulated, which subsequently resulted in reduced IAA in the developing rice spikelets, followed by poor activation of grain-filling enzymes
OsYUC11	Os12g0189500	LOC_Os12g08780	IAA	Light intensity-mediated auxin homeostasis in spikelets links carbohydrate metabolism enzymes with grain filling rate in rice.	 Interestingly, under LL, the expression of OsYUC11 was significantly downregulated, which subsequently resulted in reduced IAA in the developing rice spikelets, followed by poor activation of grain-filling enzymes
OsYUC11	Os12g0189500	LOC_Os12g08780	grain-filling	Light intensity-mediated auxin homeostasis in spikelets links carbohydrate metabolism enzymes with grain filling rate in rice.	 Interestingly, under LL, the expression of OsYUC11 was significantly downregulated, which subsequently resulted in reduced IAA in the developing rice spikelets, followed by poor activation of grain-filling enzymes
OsYUC12	Os02g0272200	LOC_Os02g17230	grain	Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.	OsYUC12 is one of three IAA biosynthesis genes we previously reported as expressed during early rice grain development, correlating with a large increase in IAA content of the grain
OsYUC12	Os02g0272200	LOC_Os02g17230	development	Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.	The analysis shows a brief peak of OsYUC12 expression early in endosperm development
OsYUC12	Os02g0272200	LOC_Os02g17230	transcription factor	Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.	Meta-analysis of microarray data, confirmed by quantitative expression analysis, revealed that OsYUC12 is coexpressed with OsIAA29, which encodes an unusual AUX/IAA transcription factor previously reported as poorly expressed
OsYUC12	Os02g0272200	LOC_Os02g17230	iaa	Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.	OsYUC12 is one of three IAA biosynthesis genes we previously reported as expressed during early rice grain development, correlating with a large increase in IAA content of the grain
OsYUC12	Os02g0272200	LOC_Os02g17230	endosperm	Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.	The analysis shows a brief peak of OsYUC12 expression early in endosperm development
OsYUC12	Os02g0272200	LOC_Os02g17230	endosperm development	Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.	The analysis shows a brief peak of OsYUC12 expression early in endosperm development
OsYUC12	Os02g0272200	LOC_Os02g17230	IAA	Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.	OsYUC12 is one of three IAA biosynthesis genes we previously reported as expressed during early rice grain development, correlating with a large increase in IAA content of the grain
OsYUC12	Os02g0272200	LOC_Os02g17230	IAA biosynthesis	Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.	OsYUC12 is one of three IAA biosynthesis genes we previously reported as expressed during early rice grain development, correlating with a large increase in IAA content of the grain
OsYUC9	Os01g0273800	LOC_Os01g16714	starch	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development
OsYUC9	Os01g0273800	LOC_Os01g16714	grain	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development
OsYUC9	Os01g0273800	LOC_Os01g16714	iaa	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	The increase in IAA content was strongly correlated with the expression of putative IAA biosynthesis genes, OsYUC9, OsYUC11 and OsTAR1, measured by quantitative reverse transcriptase polymerase chain reaction
OsYUC9	Os01g0273800	LOC_Os01g16714	iaa	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA	In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	iaa	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Furthermore, exogenous application of IAA or overexpression of the auxin biosynthesis gene OsYUCCA1 phenocopies the dao mutants
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	iaa	Auxin biosynthesis by the YUCCA genes in rice	To investigate the molecular mechanisms of IAA synthesis in rice (Oryza sativa), we identified seven YUCCA-like genes (named OsYUCCA1-7) in the rice genome
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	iaa	Auxin biosynthesis by the YUCCA genes in rice	Plants overexpressing OsYUCCA1 exhibited increased IAA levels and characteristic auxin overproduction phenotypes, whereas plants expressing antisense OsYUCCA1 cDNA displayed defects that are similar to those of rice auxin-insensitive mutants
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	iaa	Auxin biosynthesis by the YUCCA genes in rice	These observations are consistent with an important role for the rice enzyme OsYUCCA1 in IAA biosynthesis via the tryptophan-dependent pathway
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	auxin	Auxin biosynthesis by the YUCCA genes in rice	Plants overexpressing OsYUCCA1 exhibited increased IAA levels and characteristic auxin overproduction phenotypes, whereas plants expressing antisense OsYUCCA1 cDNA displayed defects that are similar to those of rice auxin-insensitive mutants
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	auxin	Auxin biosynthesis by the YUCCA genes in rice	OsYUCCA1 was expressed in almost all of the organs tested, but its expression was restricted to discrete areas, including the tips of leaves, roots, and vascular tissues, where it overlapped with expression of a beta-glucuronidase reporter gene controlled by the auxin-responsive DR5 promoter
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	root	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Trp feeding completely rescued the mutant phenotypes and moderate expression of OsYUCCA1, which encodes a key enzyme in Trp-dependent IAA biosynthesis, also rescued plant height and root length, indicating that the abnormal phenotypes of tdd1 are caused predominantly by Trp and IAA deficiency
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	iaa	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Trp feeding completely rescued the mutant phenotypes and moderate expression of OsYUCCA1, which encodes a key enzyme in Trp-dependent IAA biosynthesis, also rescued plant height and root length, indicating that the abnormal phenotypes of tdd1 are caused predominantly by Trp and IAA deficiency
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	root	Auxin biosynthesis by the YUCCA genes in rice	OsYUCCA1 was expressed in almost all of the organs tested, but its expression was restricted to discrete areas, including the tips of leaves, roots, and vascular tissues, where it overlapped with expression of a beta-glucuronidase reporter gene controlled by the auxin-responsive DR5 promoter
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	height	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Trp feeding completely rescued the mutant phenotypes and moderate expression of OsYUCCA1, which encodes a key enzyme in Trp-dependent IAA biosynthesis, also rescued plant height and root length, indicating that the abnormal phenotypes of tdd1 are caused predominantly by Trp and IAA deficiency
OsYUCCA1|OsYUC1	Os01g0645400	LOC_Os01g45760	auxin	A role for a dioxygenase in auxin metabolism and reproductive development in rice	Furthermore, exogenous application of IAA or overexpression of the auxin biosynthesis gene OsYUCCA1 phenocopies the dao mutants
OsYUCCA3	Os01g0732700	LOC_Os01g53200	development	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 This stabilizes OsYUCCA3 mRNA and promotes local auxin biosynthesis in anthers during male meiosis, which is essential for meiotic division and subsequent pollen development in rice
OsYUCCA3	Os01g0732700	LOC_Os01g53200	development	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 Our findings reveal that OsFAP1-dependent m(6)A deposition on OsYUCCA3 by OsFIP37 constitutes a hitherto unknown link between RNA modification and hormonal control of male meiosis in plant reproductive development
OsYUCCA3	Os01g0732700	LOC_Os01g53200	auxin	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 This stabilizes OsYUCCA3 mRNA and promotes local auxin biosynthesis in anthers during male meiosis, which is essential for meiotic division and subsequent pollen development in rice
OsYUCCA3	Os01g0732700	LOC_Os01g53200	pollen	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 This stabilizes OsYUCCA3 mRNA and promotes local auxin biosynthesis in anthers during male meiosis, which is essential for meiotic division and subsequent pollen development in rice
OsYUCCA3	Os01g0732700	LOC_Os01g53200	reproductive	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 Our findings reveal that OsFAP1-dependent m(6)A deposition on OsYUCCA3 by OsFIP37 constitutes a hitherto unknown link between RNA modification and hormonal control of male meiosis in plant reproductive development
OsYUCCA3	Os01g0732700	LOC_Os01g53200	meiosis	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 Our findings reveal that OsFAP1-dependent m(6)A deposition on OsYUCCA3 by OsFIP37 constitutes a hitherto unknown link between RNA modification and hormonal control of male meiosis in plant reproductive development
OsYUCCA3	Os01g0732700	LOC_Os01g53200	reproductive development	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 Our findings reveal that OsFAP1-dependent m(6)A deposition on OsYUCCA3 by OsFIP37 constitutes a hitherto unknown link between RNA modification and hormonal control of male meiosis in plant reproductive development
OsYUCCA3	Os01g0732700	LOC_Os01g53200	meiotic	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 This stabilizes OsYUCCA3 mRNA and promotes local auxin biosynthesis in anthers during male meiosis, which is essential for meiotic division and subsequent pollen development in rice
OsYUCCA3	Os01g0732700	LOC_Os01g53200	pollen development	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 This stabilizes OsYUCCA3 mRNA and promotes local auxin biosynthesis in anthers during male meiosis, which is essential for meiotic division and subsequent pollen development in rice
OsYUCCA3	Os01g0732700	LOC_Os01g53200	auxin biosynthesis	RNA N(6)-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	 This stabilizes OsYUCCA3 mRNA and promotes local auxin biosynthesis in anthers during male meiosis, which is essential for meiotic division and subsequent pollen development in rice
OsYUCCA4|OsYUC4	Os01g0224700	LOC_Os01g12490	auxin	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	In addition, OsMADS25 seemed to promote auxin signaling by activating OsYUC4 transcription
OsYUCCA6|OsYUC6	Os07g0437000	LOC_Os07g25540	auxin	Gibberellins modulate local auxin biosynthesis and polar auxin transport by negatively affecting flavonoid biosynthesis in the root tips of rice	Based on RNA-seq and qPCR analyses, we determined that GA regulates local auxin biosynthesis and polar auxin transport by modulating the expression of OsYUCCA6 and PIN
OsYUCCA6|OsYUC6	Os07g0437000	LOC_Os07g25540	ga	Gibberellins modulate local auxin biosynthesis and polar auxin transport by negatively affecting flavonoid biosynthesis in the root tips of rice	Based on RNA-seq and qPCR analyses, we determined that GA regulates local auxin biosynthesis and polar auxin transport by modulating the expression of OsYUCCA6 and PIN
OsYUCCA6|OsYUC6	Os07g0437000	LOC_Os07g25540	auxin transport	Gibberellins modulate local auxin biosynthesis and polar auxin transport by negatively affecting flavonoid biosynthesis in the root tips of rice	Based on RNA-seq and qPCR analyses, we determined that GA regulates local auxin biosynthesis and polar auxin transport by modulating the expression of OsYUCCA6 and PIN
OsYUCCA6|OsYUC6	Os07g0437000	LOC_Os07g25540	GA	Gibberellins modulate local auxin biosynthesis and polar auxin transport by negatively affecting flavonoid biosynthesis in the root tips of rice	Based on RNA-seq and qPCR analyses, we determined that GA regulates local auxin biosynthesis and polar auxin transport by modulating the expression of OsYUCCA6 and PIN
OsYUCCA6|OsYUC6	Os07g0437000	LOC_Os07g25540	auxin biosynthesis	Gibberellins modulate local auxin biosynthesis and polar auxin transport by negatively affecting flavonoid biosynthesis in the root tips of rice	Based on RNA-seq and qPCR analyses, we determined that GA regulates local auxin biosynthesis and polar auxin transport by modulating the expression of OsYUCCA6 and PIN
OsYUCCA7|OsYUC7	Os04g0128900	LOC_Os04g03980	auxin	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes	Together with OsBBM1-GR DEX-induction data, these results confirm that OsBBM1 directly regulates the expression of OsYUC6, 7 and 9 auxin biosynthesis genes.
OsZAS	Os09g0321200	LOC_Os09g15240	plant growth	Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice.	The Oryza sativa (rice) carotenoid cleavage dioxygenase OsZAS was described to produce zaxinone, a plant growth-promoting apocarotenoid
OsZAS	Os09g0321200	LOC_Os09g15240	AM symbiosis	Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice.	 Overall, our results show that the genetic manipulation of OsZAS activity in planta leads to a different effect on AM symbiosis from that of exogenous zaxinone treatment, and demonstrate that OsZAS influences the extent of AM colonization, acting as a component of a regulatory network that involves SLs
OsZAS	Os09g0321200	LOC_Os09g15240	symbiosis	Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice.	 Overall, our results show that the genetic manipulation of OsZAS activity in planta leads to a different effect on AM symbiosis from that of exogenous zaxinone treatment, and demonstrate that OsZAS influences the extent of AM colonization, acting as a component of a regulatory network that involves SLs
OsZAS	Os09g0321200	LOC_Os09g15240	AM colonization	Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice.	 Moreover, exogenous treatment with the synthetic SL analog GR24 rescued the zas mutant mycorrhizal phenotype, indicating that the lower AM colonization rate of zas is caused by a deficiency in SLs at the early stages of the interaction, and indicating that during this phase OsZAS activity is required to induce SL production, possibly mediated by the Dwarf14-Like (D14L) signaling pathway
OsZAS	Os09g0321200	LOC_Os09g15240	AM colonization	Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice.	 Overall, our results show that the genetic manipulation of OsZAS activity in planta leads to a different effect on AM symbiosis from that of exogenous zaxinone treatment, and demonstrate that OsZAS influences the extent of AM colonization, acting as a component of a regulatory network that involves SLs
OsZAS2	Os06g0162550	None	root	ZAXINONE SYNTHASE 2 regulates growth and arbuscular mycorrhizal symbiosis in rice.	 Oszas2 mutants contained lower zaxinone content in roots and exhibited reduced root and shoot biomass, fewer tillers, and higher strigolactone (SL) levels
OsZAS2	Os06g0162550	None	growth	ZAXINONE SYNTHASE 2 regulates growth and arbuscular mycorrhizal symbiosis in rice.	 Exogenous zaxinone application repressed SL biosynthesis and partially rescued the growth retardation of the Oszas2 mutant
OsZAS2	Os06g0162550	None	shoot	ZAXINONE SYNTHASE 2 regulates growth and arbuscular mycorrhizal symbiosis in rice.	 Oszas2 mutants contained lower zaxinone content in roots and exhibited reduced root and shoot biomass, fewer tillers, and higher strigolactone (SL) levels
OsZAS2	Os06g0162550	None	strigolactone	ZAXINONE SYNTHASE 2 regulates growth and arbuscular mycorrhizal symbiosis in rice.	 Oszas2 mutants contained lower zaxinone content in roots and exhibited reduced root and shoot biomass, fewer tillers, and higher strigolactone (SL) levels
OsZAS2	Os06g0162550	None	phosphate	ZAXINONE SYNTHASE 2 regulates growth and arbuscular mycorrhizal symbiosis in rice.	 OsZAS2 was predominantly localized in plastids and mainly expressed under phosphate starvation
OsZAS2	Os06g0162550	None	phosphate starvation	ZAXINONE SYNTHASE 2 regulates growth and arbuscular mycorrhizal symbiosis in rice.	 OsZAS2 was predominantly localized in plastids and mainly expressed under phosphate starvation
OsZFP	Os01g0252900	LOC_Os01g14920	root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	T2 OsZFP-RNAi lines had significantly fewer lateral roots than did wild type plants, which suggests a role for OsCYP2 and OsZFP in regulating lateral root development
OsZFP	Os01g0252900	LOC_Os01g14920	root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsZFP	Os01g0252900	LOC_Os01g14920	development	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	T2 OsZFP-RNAi lines had significantly fewer lateral roots than did wild type plants, which suggests a role for OsCYP2 and OsZFP in regulating lateral root development
OsZFP	Os01g0252900	LOC_Os01g14920	development	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsZFP	Os01g0252900	LOC_Os01g14920	root development	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	T2 OsZFP-RNAi lines had significantly fewer lateral roots than did wild type plants, which suggests a role for OsCYP2 and OsZFP in regulating lateral root development
OsZFP	Os01g0252900	LOC_Os01g14920	root development	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsZFP	Os01g0252900	LOC_Os01g14920	iaa	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsZFP	Os01g0252900	LOC_Os01g14920	lateral root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	T2 OsZFP-RNAi lines had significantly fewer lateral roots than did wild type plants, which suggests a role for OsCYP2 and OsZFP in regulating lateral root development
OsZFP	Os01g0252900	LOC_Os01g14920	lateral root	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsZFP	Os01g0252900	LOC_Os01g14920	IAA	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	These findings imply that OsCYP2 and OsZFP participate in IAA signal pathways controlling lateral root development
OsZFP1|SRZ3	Os06g0141200	LOC_Os06g04920	ABA	Transgenic analysis of a salt-inhibited OsZFP1 gene from rice	The transgenic Arabidopsis plants also bolted later than wild type plants upon ABA treatment, suggesting that the function of the OsZFP1 gene may be regulated by ABA
OsZFP1|SRZ3	Os06g0141200	LOC_Os06g04920	salt	Transgenic analysis of a salt-inhibited OsZFP1 gene from rice	This result implies that OsZFP1 gene may function as a repressor, which probably inhibits the expression of some salt-inducible genes
OsZFP1|SRZ3	Os06g0141200	LOC_Os06g04920	salt	Transgenic analysis of a salt-inhibited OsZFP1 gene from rice	Transgenic analysis of a salt-inhibited OsZFP1 gene from rice
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	salt	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	salt	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Here, we report that the zinc-finger protein (ZFP) OsZFP213 functions in enhancing salt tolerance in rice
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	salt	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Transgenic rice overexpressing OsZFP213 showed enhanced salt tolerance compared with wild type and OsZFP213 RNAi plants
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	salt	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Furthermore, OsZFP213 overexpression plants showed higher transcription levels of antioxidant system genes and higher catalytic activity of scavenging enzymes of reactive oxygen, such as superoxide dismutase (SOD), ascorbate peroxidase (APX), catalase (CAT), and glutathione reductase (GR), and a lower level of ROS accumulation than that in wild type and OsZFP213 RNAi plants under salt treatment
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	salt	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Taken together, these results suggest that OsZFP213 cooperates with OsMAPK3 in the regulation of rice salt stress tolerance by enhancing the ability of scavenging reactive oxygen
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	tolerance	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	tolerance	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Here, we report that the zinc-finger protein (ZFP) OsZFP213 functions in enhancing salt tolerance in rice
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	tolerance	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Transgenic rice overexpressing OsZFP213 showed enhanced salt tolerance compared with wild type and OsZFP213 RNAi plants
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	tolerance	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Taken together, these results suggest that OsZFP213 cooperates with OsMAPK3 in the regulation of rice salt stress tolerance by enhancing the ability of scavenging reactive oxygen
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	salt tolerance	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	salt tolerance	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Here, we report that the zinc-finger protein (ZFP) OsZFP213 functions in enhancing salt tolerance in rice
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	salt tolerance	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Transgenic rice overexpressing OsZFP213 showed enhanced salt tolerance compared with wild type and OsZFP213 RNAi plants
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	salt stress	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Taken together, these results suggest that OsZFP213 cooperates with OsMAPK3 in the regulation of rice salt stress tolerance by enhancing the ability of scavenging reactive oxygen
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	stress	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Taken together, these results suggest that OsZFP213 cooperates with OsMAPK3 in the regulation of rice salt stress tolerance by enhancing the ability of scavenging reactive oxygen
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	nucleus	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	OsZFP213 is localized in the nucleus and has transactivation activity
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	R protein	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	R protein	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Here, we report that the zinc-finger protein (ZFP) OsZFP213 functions in enhancing salt tolerance in rice
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	stress tolerance	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	Taken together, these results suggest that OsZFP213 cooperates with OsMAPK3 in the regulation of rice salt stress tolerance by enhancing the ability of scavenging reactive oxygen
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	stem	A transcription factor coordinating internode elongation and photoperiodic signals in rice.	The florigens reduce PINE1 expression to increase stem responsiveness to GA and promote flowering
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	ga	A transcription factor coordinating internode elongation and photoperiodic signals in rice.	The florigens reduce PINE1 expression to increase stem responsiveness to GA and promote flowering
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	GA	A transcription factor coordinating internode elongation and photoperiodic signals in rice.	The florigens reduce PINE1 expression to increase stem responsiveness to GA and promote flowering
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	transcription factor	Antagonistic regulation of the gibberellic acid response during stem growth in rice	By contrast, upregulation of DECELERATOR OF INTERNODE ELONGATION 1 (DEC1), which encodes a zinc-finger transcription factor, suppresses internode elongation, whereas downregulation of DEC1 allows internode elongation
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	growth	Antagonistic regulation of the gibberellic acid response during stem growth in rice	Furthermore, an analysis of genetic diversity suggests that mutations in ACE1 and DEC1 have historically contributed to the selection of shorter plants in domesticated populations of rice to increase their resistance to lodging, and of taller plants in wild species of rice for adaptation to growth in deep water
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	resistance	Antagonistic regulation of the gibberellic acid response during stem growth in rice	Furthermore, an analysis of genetic diversity suggests that mutations in ACE1 and DEC1 have historically contributed to the selection of shorter plants in domesticated populations of rice to increase their resistance to lodging, and of taller plants in wild species of rice for adaptation to growth in deep water
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	internode elongation	Antagonistic regulation of the gibberellic acid response during stem growth in rice	By contrast, upregulation of DECELERATOR OF INTERNODE ELONGATION 1 (DEC1), which encodes a zinc-finger transcription factor, suppresses internode elongation, whereas downregulation of DEC1 allows internode elongation
OsZFP213|PINE1|DEC1	Os12g0617000	LOC_Os12g42250	internode elongation	Antagonistic regulation of the gibberellic acid response during stem growth in rice	We also show that the mechanism of internode elongation that is mediated by ACE1 and DEC1 is conserved in the Gramineae family
OsZFP350	Os05g0286100	LOC_Os05g20930	root	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.
OsZFP350	Os05g0286100	LOC_Os05g20930	root	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Expression of OsZFP350 was up-regulated by salt, drought and high temperature, indicating that it might be a regulator in response to abiotic stress in rice root
OsZFP350	Os05g0286100	LOC_Os05g20930	root	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	The primary root length, the number of adventitious and lateral roots was significantly increased in OsZFP350 transgenic plants when compared to the wild-type
OsZFP350	Os05g0286100	LOC_Os05g20930	resistance	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.
OsZFP350	Os05g0286100	LOC_Os05g20930	development	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.
OsZFP350	Os05g0286100	LOC_Os05g20930	development	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	In addition, our results also show that the up-regulated OsZFP350 could significantly increase the germination rate of seeds under abiotic stress, and attenuate the heat, salinity and drought stress during the development of rice roots
OsZFP350	Os05g0286100	LOC_Os05g20930	drought	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Expression of OsZFP350 was up-regulated by salt, drought and high temperature, indicating that it might be a regulator in response to abiotic stress in rice root
OsZFP350	Os05g0286100	LOC_Os05g20930	drought	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	In addition, our results also show that the up-regulated OsZFP350 could significantly increase the germination rate of seeds under abiotic stress, and attenuate the heat, salinity and drought stress during the development of rice roots
OsZFP350	Os05g0286100	LOC_Os05g20930	salinity	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	In addition, our results also show that the up-regulated OsZFP350 could significantly increase the germination rate of seeds under abiotic stress, and attenuate the heat, salinity and drought stress during the development of rice roots
OsZFP350	Os05g0286100	LOC_Os05g20930	abiotic stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.
OsZFP350	Os05g0286100	LOC_Os05g20930	abiotic stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Expression of OsZFP350 was up-regulated by salt, drought and high temperature, indicating that it might be a regulator in response to abiotic stress in rice root
OsZFP350	Os05g0286100	LOC_Os05g20930	abiotic stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	In addition, our results also show that the up-regulated OsZFP350 could significantly increase the germination rate of seeds under abiotic stress, and attenuate the heat, salinity and drought stress during the development of rice roots
OsZFP350	Os05g0286100	LOC_Os05g20930	abiotic stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Based on these findings, it could be concluded that OsZFP350 plays a positive role in the adaptability of rice roots to abiotic stress
OsZFP350	Os05g0286100	LOC_Os05g20930	root development	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.
OsZFP350	Os05g0286100	LOC_Os05g20930	stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.
OsZFP350	Os05g0286100	LOC_Os05g20930	stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Expression of OsZFP350 was up-regulated by salt, drought and high temperature, indicating that it might be a regulator in response to abiotic stress in rice root
OsZFP350	Os05g0286100	LOC_Os05g20930	stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	In addition, our results also show that the up-regulated OsZFP350 could significantly increase the germination rate of seeds under abiotic stress, and attenuate the heat, salinity and drought stress during the development of rice roots
OsZFP350	Os05g0286100	LOC_Os05g20930	stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Based on these findings, it could be concluded that OsZFP350 plays a positive role in the adaptability of rice roots to abiotic stress
OsZFP350	Os05g0286100	LOC_Os05g20930	R protein	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.
OsZFP350	Os05g0286100	LOC_Os05g20930	zinc	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.
OsZFP350	Os05g0286100	LOC_Os05g20930	biotic stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.
OsZFP350	Os05g0286100	LOC_Os05g20930	biotic stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Expression of OsZFP350 was up-regulated by salt, drought and high temperature, indicating that it might be a regulator in response to abiotic stress in rice root
OsZFP350	Os05g0286100	LOC_Os05g20930	biotic stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	In addition, our results also show that the up-regulated OsZFP350 could significantly increase the germination rate of seeds under abiotic stress, and attenuate the heat, salinity and drought stress during the development of rice roots
OsZFP350	Os05g0286100	LOC_Os05g20930	biotic stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Based on these findings, it could be concluded that OsZFP350 plays a positive role in the adaptability of rice roots to abiotic stress
OsZFP350	Os05g0286100	LOC_Os05g20930	lateral root	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	The primary root length, the number of adventitious and lateral roots was significantly increased in OsZFP350 transgenic plants when compared to the wild-type
OsZFP350	Os05g0286100	LOC_Os05g20930	drought stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	In addition, our results also show that the up-regulated OsZFP350 could significantly increase the germination rate of seeds under abiotic stress, and attenuate the heat, salinity and drought stress during the development of rice roots
OsZFP350	Os05g0286100	LOC_Os05g20930	primary root	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	The primary root length, the number of adventitious and lateral roots was significantly increased in OsZFP350 transgenic plants when compared to the wild-type
OsZFP350	Os05g0286100	LOC_Os05g20930	drought stress	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	In addition, our results also show that the up-regulated OsZFP350 could significantly increase the germination rate of seeds under abiotic stress, and attenuate the heat, salinity and drought stress during the development of rice roots
OsZFP350	Os05g0286100	LOC_Os05g20930	root length	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	The primary root length, the number of adventitious and lateral roots was significantly increased in OsZFP350 transgenic plants when compared to the wild-type
OsZFP350	Os05g0286100	LOC_Os05g20930	adaptability	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Based on these findings, it could be concluded that OsZFP350 plays a positive role in the adaptability of rice roots to abiotic stress
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	leaf development	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	We further discovered that a C2H2 transcription factor, OsZFP7, is an OsMYB60 binding partner and involved in leaf development.
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	leaf flattening	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	A C2H2 transcription factor, OsZFP7, also is involved in the TL/OsMYB60 regulated pathway to maintain leaf flattening
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	transcription factor	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	A C2H2 transcription factor, OsZFP7, also is involved in the TL/OsMYB60 regulated pathway to maintain leaf flattening
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	growth	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	Taken together, ZFP207 acts as a transcriptional repressor of SD1/OsGA20ox2 and it may play a critical role in plant growth and development through fine-tuning GA biosynthesis in rice
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	development	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	Taken together, ZFP207 acts as a transcriptional repressor of SD1/OsGA20ox2 and it may play a critical role in plant growth and development through fine-tuning GA biosynthesis in rice
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	grain	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	RNA interference of ZFP207 caused increased plant height and grain length
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	grain length	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	RNA interference of ZFP207 caused increased plant height and grain length
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	R protein	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	Here we report a Cys2/His2 zinc finger protein ZFP207 acting as a transcriptional repressor of OsGA20ox2
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	culm	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	ZFP207 was mainly accumulated in young tissues and more specifically in culm nodes
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	zinc	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	Here we report a Cys2/His2 zinc finger protein ZFP207 acting as a transcriptional repressor of OsGA20ox2
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	plant growth	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	Taken together, ZFP207 acts as a transcriptional repressor of SD1/OsGA20ox2 and it may play a critical role in plant growth and development through fine-tuning GA biosynthesis in rice
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	ga	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	Taken together, ZFP207 acts as a transcriptional repressor of SD1/OsGA20ox2 and it may play a critical role in plant growth and development through fine-tuning GA biosynthesis in rice
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	height	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	RNA interference of ZFP207 caused increased plant height and grain length
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	plant height	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	RNA interference of ZFP207 caused increased plant height and grain length
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	GA	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	Taken together, ZFP207 acts as a transcriptional repressor of SD1/OsGA20ox2 and it may play a critical role in plant growth and development through fine-tuning GA biosynthesis in rice
OsZFP7|ZFP207	Os07g0593000	LOC_Os07g40300	GA biosynthesis	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.)	Taken together, ZFP207 acts as a transcriptional repressor of SD1/OsGA20ox2 and it may play a critical role in plant growth and development through fine-tuning GA biosynthesis in rice
OsZHD1	Os09g0466400	LOC_Os09g29130	leaf rolling	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	We herein reported OsZHD1 with key roles in rice morphogenesis, especially in the modulating of leaf rolling, which provided a novel insight into the molecular mechanism of leaf development in rice
OsZHD1	Os09g0466400	LOC_Os09g29130	transcription factor	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	The abaxially curled leaf phenotypes, co-segregating with the inserted transferred DNA, were caused by overexpression of a zinc finger homeodomain class homeobox transcription factor (OsZHD1)
OsZHD1	Os09g0466400	LOC_Os09g29130	transcription factor	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice
OsZHD1	Os09g0466400	LOC_Os09g29130	leaf development	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	We herein reported OsZHD1 with key roles in rice morphogenesis, especially in the modulating of leaf rolling, which provided a novel insight into the molecular mechanism of leaf development in rice
OsZHD1	Os09g0466400	LOC_Os09g29130	leaf	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	The abaxially curled leaf phenotypes, co-segregating with the inserted transferred DNA, were caused by overexpression of a zinc finger homeodomain class homeobox transcription factor (OsZHD1)
OsZHD1	Os09g0466400	LOC_Os09g29130	leaf	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	Artificial overexpression of OsZHD1 or its closest homolog OsZHD2 induced the abaxial leaf curling
OsZHD1	Os09g0466400	LOC_Os09g29130	leaf	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	We herein reported OsZHD1 with key roles in rice morphogenesis, especially in the modulating of leaf rolling, which provided a novel insight into the molecular mechanism of leaf development in rice
OsZHD1	Os09g0466400	LOC_Os09g29130	leaf	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice
OsZHD1	Os09g0466400	LOC_Os09g29130	panicle	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	OsZHD1 exhibited a constitutive expression pattern in wild-type plants and accumulated in the developing leaves and panicles
OsZHD1	Os09g0466400	LOC_Os09g29130	transcription factor	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.
OsZHD1	Os09g0466400	LOC_Os09g29130	floral	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.
OsZHD1	Os09g0466400	LOC_Os09g29130	floral	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	 Among several regulatory genes that are preferentially expressed in the inflorescence meristem during the floral transition, this study examines the homeobox genes OsZHD1 and OsZHD2 for their roles in regulating this transition
OsZHD1	Os09g0466400	LOC_Os09g29130	meristem	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.
OsZHD1	Os09g0466400	LOC_Os09g29130	meristem	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	 Among several regulatory genes that are preferentially expressed in the inflorescence meristem during the floral transition, this study examines the homeobox genes OsZHD1 and OsZHD2 for their roles in regulating this transition
OsZHD1	Os09g0466400	LOC_Os09g29130	inflorescence	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.
OsZHD1	Os09g0466400	LOC_Os09g29130	inflorescence	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	 Among several regulatory genes that are preferentially expressed in the inflorescence meristem during the floral transition, this study examines the homeobox genes OsZHD1 and OsZHD2 for their roles in regulating this transition
OsZHD1	Os09g0466400	LOC_Os09g29130	homeobox gene	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	 Among several regulatory genes that are preferentially expressed in the inflorescence meristem during the floral transition, this study examines the homeobox genes OsZHD1 and OsZHD2 for their roles in regulating this transition
OsZHD2	Os08g0479400	LOC_Os08g37400	transcription factor	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.
OsZHD2	Os08g0479400	LOC_Os08g37400	root	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.
OsZHD2	Os08g0479400	LOC_Os08g37400	root	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 OsZHD2 was preferentially expressed in shoot apical meristem and root tips
OsZHD2	Os08g0479400	LOC_Os08g37400	root	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 Treatment with ACC, an ethylene precursor, induced the expression of DR5 reporter at the root tip and stele, whereas an ethylene biosynthesis inhibitor, AVG, treatment decreased that expression in both WT and OsZHD2 overexpression line
OsZHD2	Os08g0479400	LOC_Os08g37400	root	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 These observations suggest that OsZHD2 enhances root meristem activity by influencing ethylene biosynthesis and, in turn, auxin
OsZHD2	Os08g0479400	LOC_Os08g37400	shoot	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 OsZHD2 was preferentially expressed in shoot apical meristem and root tips
OsZHD2	Os08g0479400	LOC_Os08g37400	auxin	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 These observations suggest that OsZHD2 enhances root meristem activity by influencing ethylene biosynthesis and, in turn, auxin
OsZHD2	Os08g0479400	LOC_Os08g37400	ethylene	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.
OsZHD2	Os08g0479400	LOC_Os08g37400	ethylene	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 ChIP assay results suggested that OsZHD2 induces ethylene biosynthesis by controlling ACS5 directly
OsZHD2	Os08g0479400	LOC_Os08g37400	ethylene	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 Treatment with ACC, an ethylene precursor, induced the expression of DR5 reporter at the root tip and stele, whereas an ethylene biosynthesis inhibitor, AVG, treatment decreased that expression in both WT and OsZHD2 overexpression line
OsZHD2	Os08g0479400	LOC_Os08g37400	ethylene	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 These observations suggest that OsZHD2 enhances root meristem activity by influencing ethylene biosynthesis and, in turn, auxin
OsZHD2	Os08g0479400	LOC_Os08g37400	meristem	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.
OsZHD2	Os08g0479400	LOC_Os08g37400	meristem	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 OsZHD2 was preferentially expressed in shoot apical meristem and root tips
OsZHD2	Os08g0479400	LOC_Os08g37400	meristem	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 These observations suggest that OsZHD2 enhances root meristem activity by influencing ethylene biosynthesis and, in turn, auxin
OsZHD2	Os08g0479400	LOC_Os08g37400	shoot apical meristem	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 OsZHD2 was preferentially expressed in shoot apical meristem and root tips
OsZHD2	Os08g0479400	LOC_Os08g37400	root meristem	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.
OsZHD2	Os08g0479400	LOC_Os08g37400	root meristem	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	 These observations suggest that OsZHD2 enhances root meristem activity by influencing ethylene biosynthesis and, in turn, auxin
OsZHD2	Os08g0479400	LOC_Os08g37400	transcription factor	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.
OsZHD2	Os08g0479400	LOC_Os08g37400	floral	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.
OsZHD2	Os08g0479400	LOC_Os08g37400	floral	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	 Among several regulatory genes that are preferentially expressed in the inflorescence meristem during the floral transition, this study examines the homeobox genes OsZHD1 and OsZHD2 for their roles in regulating this transition
OsZHD2	Os08g0479400	LOC_Os08g37400	meristem	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.
OsZHD2	Os08g0479400	LOC_Os08g37400	meristem	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	 Among several regulatory genes that are preferentially expressed in the inflorescence meristem during the floral transition, this study examines the homeobox genes OsZHD1 and OsZHD2 for their roles in regulating this transition
OsZHD2	Os08g0479400	LOC_Os08g37400	inflorescence	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.
OsZHD2	Os08g0479400	LOC_Os08g37400	inflorescence	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	 Among several regulatory genes that are preferentially expressed in the inflorescence meristem during the floral transition, this study examines the homeobox genes OsZHD1 and OsZHD2 for their roles in regulating this transition
OsZHD2	Os08g0479400	LOC_Os08g37400	homeobox gene	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	 Among several regulatory genes that are preferentially expressed in the inflorescence meristem during the floral transition, this study examines the homeobox genes OsZHD1 and OsZHD2 for their roles in regulating this transition
OsZIP1	Os01g0972200	LOC_Os01g74110	stress	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.	Transgenic rice overexpressing OsZIP1 grew better under excess metal stress but accumulated less of the metals in plants
OsZIP1	Os01g0972200	LOC_Os01g74110	stress	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.	We further identified the DNA methylation of histone H3K9me2 of OsZIP1 and found that OsZIP1 locus, whose transcribed regions imbed a 242 bp sequence, is demethylated, suggesting that epigenetic modification is likely associated with OsZIP1 function under Cd stress
OsZIP1	Os01g0972200	LOC_Os01g74110	transporter	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.
OsZIP1	Os01g0972200	LOC_Os01g74110	transporter	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.	In this report, we provided evidence that OsZIP1 is a metal-detoxified transporter through preventing excess Zn, Cu and Cd accumulation in rice
OsZIP1	Os01g0972200	LOC_Os01g74110	transporter	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.	OsZIP1 is a transporter that is required for detoxification of excess Zn, Cu and Cd in rice
OsZIP1	Os01g0972200	LOC_Os01g74110	plasma membrane	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.	Expression of OsZIP-GFP fusion in rice protoplasts and tobacco leaves shows that OsZIP1 resides in the endoplasmic reticulum (ER) and plasma membrane (PM)
OsZIP1	Os01g0972200	LOC_Os01g74110	cadmium	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.
OsZIP1	Os01g0972200	LOC_Os01g74110	copper	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.
OsZIP10	None	LOC_Os05g39550	tolerance	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.
OsZIP10	None	LOC_Os05g39550	zinc	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.
OsZIP10	None	LOC_Os05g39550	zinc	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	 The yeast one-hybrid assay, transient transcriptional activity assay using the dual-luciferase reporter system and electrophoretic mobility shift assay demonstrated that OsNAC15 directly binds to the zinc deficiency-responsive element motifs in the promoters of OsZIP7 and OsZIP10 to repress their transcriptions
OsZIP10	None	LOC_Os05g39550	cadmium	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.
OsZIP11	Os05g0316100	LOC_Os05g25194	growth	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Knocking out OsZIP11 by CRISPR-Cas9 approach led to the attenuated rice growth and physiological phenotypes, depicting shorter plant height, reduced biomass, chlorosis (a symptom of lower chlorophyll concentration), and over-accumulation of malondialdehyde (complex representing the peroxidation of membrane lipids) in rice plantlets
OsZIP11	Os05g0316100	LOC_Os05g25194	growth	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Our work pointed out that OsZIP11 is required for iron acquisition for rice growth and development
OsZIP11	Os05g0316100	LOC_Os05g25194	development	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 OsZIP11 was preferentially expressed in the rice tissues (or organs) at later flowering and seed development stages
OsZIP11	Os05g0316100	LOC_Os05g25194	development	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Our work pointed out that OsZIP11 is required for iron acquisition for rice growth and development
OsZIP11	Os05g0316100	LOC_Os05g25194	spikelet	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 The field trials demonstrated that OsZIP11 mutation impaired the capacity of seed development, with shortened panicle and seed length, compromised spikelet fertility, and reduced grain per plant or 1000-grain weight
OsZIP11	Os05g0316100	LOC_Os05g25194	grain	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 The field trials demonstrated that OsZIP11 mutation impaired the capacity of seed development, with shortened panicle and seed length, compromised spikelet fertility, and reduced grain per plant or 1000-grain weight
OsZIP11	Os05g0316100	LOC_Os05g25194	panicle	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 The field trials demonstrated that OsZIP11 mutation impaired the capacity of seed development, with shortened panicle and seed length, compromised spikelet fertility, and reduced grain per plant or 1000-grain weight
OsZIP11	Os05g0316100	LOC_Os05g25194	seed	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 OsZIP11 was preferentially expressed in the rice tissues (or organs) at later flowering and seed development stages
OsZIP11	Os05g0316100	LOC_Os05g25194	seed	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 The field trials demonstrated that OsZIP11 mutation impaired the capacity of seed development, with shortened panicle and seed length, compromised spikelet fertility, and reduced grain per plant or 1000-grain weight
OsZIP11	Os05g0316100	LOC_Os05g25194	transporter	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.
OsZIP11	Os05g0316100	LOC_Os05g25194	transporter	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Whether the rice ZRT/IRT-like protein family metal transporter OsZIP11 is involved in Fe transport has not been functionally defined
OsZIP11	Os05g0316100	LOC_Os05g25194	metal transport	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Whether the rice ZRT/IRT-like protein family metal transporter OsZIP11 is involved in Fe transport has not been functionally defined
OsZIP11	Os05g0316100	LOC_Os05g25194	zinc	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Transcripts of OsZIP11 were significantly induced under Fe but not under zinc (Zn), copper (Cu) or manganese (Mn) deficiency
OsZIP11	Os05g0316100	LOC_Os05g25194	manganese	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Transcripts of OsZIP11 were significantly induced under Fe but not under zinc (Zn), copper (Cu) or manganese (Mn) deficiency
OsZIP11	Os05g0316100	LOC_Os05g25194	plant height	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Knocking out OsZIP11 by CRISPR-Cas9 approach led to the attenuated rice growth and physiological phenotypes, depicting shorter plant height, reduced biomass, chlorosis (a symptom of lower chlorophyll concentration), and over-accumulation of malondialdehyde (complex representing the peroxidation of membrane lipids) in rice plantlets
OsZIP11	Os05g0316100	LOC_Os05g25194	chlorophyll	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Knocking out OsZIP11 by CRISPR-Cas9 approach led to the attenuated rice growth and physiological phenotypes, depicting shorter plant height, reduced biomass, chlorosis (a symptom of lower chlorophyll concentration), and over-accumulation of malondialdehyde (complex representing the peroxidation of membrane lipids) in rice plantlets
OsZIP11	Os05g0316100	LOC_Os05g25194	copper	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Transcripts of OsZIP11 were significantly induced under Fe but not under zinc (Zn), copper (Cu) or manganese (Mn) deficiency
OsZIP11	Os05g0316100	LOC_Os05g25194	seed development	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 OsZIP11 was preferentially expressed in the rice tissues (or organs) at later flowering and seed development stages
OsZIP11	Os05g0316100	LOC_Os05g25194	seed development	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 The field trials demonstrated that OsZIP11 mutation impaired the capacity of seed development, with shortened panicle and seed length, compromised spikelet fertility, and reduced grain per plant or 1000-grain weight
OsZIP11	Os05g0316100	LOC_Os05g25194	iron	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.
OsZIP11	Os05g0316100	LOC_Os05g25194	iron	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 The objective of the study is to figure out the essential role of the uncharacterized OsZIP11 played in rice growth, development, and iron accumulation, particularly in seeds
OsZIP11	Os05g0316100	LOC_Os05g25194	iron	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Yeast (Saccharomyces cerevisiae) transformed with OsZIP11 sequences displayed an active iron input which turned out that excessive iron accumulated in the cells
OsZIP11	Os05g0316100	LOC_Os05g25194	iron	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Knocking out OsZIP11 also lowered the accumulation of iron in the brown rice by 48-51% compared to the wild-type
OsZIP11	Os05g0316100	LOC_Os05g25194	iron	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Our work pointed out that OsZIP11 is required for iron acquisition for rice growth and development
OsZIP11	Os05g0316100	LOC_Os05g25194	grain weight	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 The field trials demonstrated that OsZIP11 mutation impaired the capacity of seed development, with shortened panicle and seed length, compromised spikelet fertility, and reduced grain per plant or 1000-grain weight
OsZIP11	Os05g0316100	LOC_Os05g25194	flowering	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 OsZIP11 was preferentially expressed in the rice tissues (or organs) at later flowering and seed development stages
OsZIP11	Os05g0316100	LOC_Os05g25194	Fe	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Whether the rice ZRT/IRT-like protein family metal transporter OsZIP11 is involved in Fe transport has not been functionally defined
OsZIP11	Os05g0316100	LOC_Os05g25194	Fe	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 Transcripts of OsZIP11 were significantly induced under Fe but not under zinc (Zn), copper (Cu) or manganese (Mn) deficiency
OsZIP11	Os05g0316100	LOC_Os05g25194	seed length	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	 The field trials demonstrated that OsZIP11 mutation impaired the capacity of seed development, with shortened panicle and seed length, compromised spikelet fertility, and reduced grain per plant or 1000-grain weight
OsZIP3	Os04g0613000	LOC_Os04g52310	xylem	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Immunostaining revealed that OsZIP3 was localized at the xylem intervening parenchyma cells and xylem transfer cell of the enlarged vascular bundle in both basal and upper nodes
OsZIP3	Os04g0613000	LOC_Os04g52310	xylem	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Taken together, OsZIP3 located in the node is responsible for unloading Zn from the xylem of enlarged vascular bundles, which is the first step for preferential distribution of Zn to the developing tissues in rice
OsZIP3	Os04g0613000	LOC_Os04g52310	vascular bundle	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Immunostaining revealed that OsZIP3 was localized at the xylem intervening parenchyma cells and xylem transfer cell of the enlarged vascular bundle in both basal and upper nodes
OsZIP3	Os04g0613000	LOC_Os04g52310	vascular bundle	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Taken together, OsZIP3 located in the node is responsible for unloading Zn from the xylem of enlarged vascular bundles, which is the first step for preferential distribution of Zn to the developing tissues in rice
OsZIP3	Os04g0613000	LOC_Os04g52310	shoot	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Knockdown of OsZIP3 resulted in significantly reduced Zn in the shoot basal region containing shoot meristem and elongating zone, but increased Zn in the transpiration flow
OsZIP3	Os04g0613000	LOC_Os04g52310	meristem	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Knockdown of OsZIP3 resulted in significantly reduced Zn in the shoot basal region containing shoot meristem and elongating zone, but increased Zn in the transpiration flow
OsZIP3	Os04g0613000	LOC_Os04g52310	transporter	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.
OsZIP3	Os04g0613000	LOC_Os04g52310	R protein	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Neither OsZIP3 gene expression nor protein encoded was affected by either deficiency or toxic level of Zn
OsZIP3	Os04g0613000	LOC_Os04g52310	node	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Taken together, OsZIP3 located in the node is responsible for unloading Zn from the xylem of enlarged vascular bundles, which is the first step for preferential distribution of Zn to the developing tissues in rice
OsZIP3	Os04g0613000	LOC_Os04g52310	Zn distribution	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice
OsZIP3	Os04g0613000	LOC_Os04g52310	shoot meristem	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice	Knockdown of OsZIP3 resulted in significantly reduced Zn in the shoot basal region containing shoot meristem and elongating zone, but increased Zn in the transpiration flow
OsZIP4	Os08g0207500	LOC_Os08g10630	meristem	OsZIP4, a novel zinc-regulated zinc transporter in rice	Furthermore, OsZIP4 transcripts were detected in the meristem of Zn-deficient roots and shoots
OsZIP4	Os08g0207500	LOC_Os08g10630	flower	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	Transgenic rice plants overexpressing the OsZIP4 gene under the control of the cauliflower mosaic virus (CaMV) 35S promoter were produced
OsZIP4	Os08g0207500	LOC_Os08g10630	seed	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	The Zn concentration in seeds of 35S-OsZIP4 plants was four times lower compared with vector controls
OsZIP4	Os08g0207500	LOC_Os08g10630	shoot	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	The Zn concentration in roots of 35S-OsZIP4 transgenic plants was 10 times higher than in those of vector controls, but it was five times lower in shoots
OsZIP4	Os08g0207500	LOC_Os08g10630	shoot	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	Northern blot analysis and quantitative real-time reverse transcription-PCR revealed transcripts of OsZIP4 expression driven by the CaMV 35S promoter in roots and shoots of 35S-OsZIP4 plants, but levels of endogenous OsZIP4 transcripts were low in roots and high in shoots compared with vector controls
OsZIP4	Os08g0207500	LOC_Os08g10630	shoot	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	Microarray analysis revealed that the genes expressed in shoots of 35S-OsZIP4 plants coincided with those induced in shoots of Zn-deficient plants
OsZIP4	Os08g0207500	LOC_Os08g10630	root	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	The Zn concentration in roots of 35S-OsZIP4 transgenic plants was 10 times higher than in those of vector controls, but it was five times lower in shoots
OsZIP4	Os08g0207500	LOC_Os08g10630	root	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	Northern blot analysis and quantitative real-time reverse transcription-PCR revealed transcripts of OsZIP4 expression driven by the CaMV 35S promoter in roots and shoots of 35S-OsZIP4 plants, but levels of endogenous OsZIP4 transcripts were low in roots and high in shoots compared with vector controls
OsZIP4	Os08g0207500	LOC_Os08g10630	root	OsZIP4, a novel zinc-regulated zinc transporter in rice	Microarray and northern blot analysis revealed that OsZIP4 was highly expressed under conditions of Zn deficiency in roots and shoots
OsZIP4	Os08g0207500	LOC_Os08g10630	root	OsZIP4, a novel zinc-regulated zinc transporter in rice	Real-time-PCR revealed that the OsZIP4 transcripts were more abundant than those of OsZIP1 or OsZIP3 in Zn-deficient roots and shoots
OsZIP4	Os08g0207500	LOC_Os08g10630	root	OsZIP4, a novel zinc-regulated zinc transporter in rice	In situ hybridization analysis revealed that OsZIP4 in Zn-deficient rice was expressed in shoots and roots, especially in phloem cells
OsZIP4	Os08g0207500	LOC_Os08g10630	root	OsZIP4, a novel zinc-regulated zinc transporter in rice	Furthermore, OsZIP4 transcripts were detected in the meristem of Zn-deficient roots and shoots
OsZIP4	Os08g0207500	LOC_Os08g10630	zinc	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants
OsZIP4	Os08g0207500	LOC_Os08g10630	transporter	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	OsZIP4 is a Zn transporter that localizes to apical cells
OsZIP4	Os08g0207500	LOC_Os08g10630	transporter	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	These results indicate that constitutive expression of OsZIP4 changes the Zn distribution within rice plants, and that OsZIP4 is a critical Zn transporter that must be strictly regulated
OsZIP4	Os08g0207500	LOC_Os08g10630	transporter	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants
OsZIP4	Os08g0207500	LOC_Os08g10630	transporter	OsZIP4, a novel zinc-regulated zinc transporter in rice	Four distinct genes, OsZIP4, OsZIP5, OsZIP6, and OsZIP7 that exhibit sequence similarity to the rice ferrous ion transporter, OsIRT1, were isolated
OsZIP4	Os08g0207500	LOC_Os08g10630	transporter	OsZIP4, a novel zinc-regulated zinc transporter in rice	OsZIP4 complemented a Zn-uptake-deficient yeast (Saccharomyces cerevisiae) mutant, Deltazrt1,Deltazrt2, indicating that OsZIP4 is a functional transporter of Zn
OsZIP4	Os08g0207500	LOC_Os08g10630	transporter	OsZIP4, a novel zinc-regulated zinc transporter in rice	These results suggested that OsZIP4 is a Zn transporter that may be responsible for the translocation of Zn within rice plants
OsZIP4	Os08g0207500	LOC_Os08g10630	transporter	OsZIP4, a novel zinc-regulated zinc transporter in rice	OsZIP4, a novel zinc-regulated zinc transporter in rice
OsZIP4	Os08g0207500	LOC_Os08g10630	zinc	OsZIP4, a novel zinc-regulated zinc transporter in rice	OsZIP4, a novel zinc-regulated zinc transporter in rice
OsZIP4	Os08g0207500	LOC_Os08g10630	shoot	OsZIP4, a novel zinc-regulated zinc transporter in rice	Microarray and northern blot analysis revealed that OsZIP4 was highly expressed under conditions of Zn deficiency in roots and shoots
OsZIP4	Os08g0207500	LOC_Os08g10630	shoot	OsZIP4, a novel zinc-regulated zinc transporter in rice	Real-time-PCR revealed that the OsZIP4 transcripts were more abundant than those of OsZIP1 or OsZIP3 in Zn-deficient roots and shoots
OsZIP4	Os08g0207500	LOC_Os08g10630	shoot	OsZIP4, a novel zinc-regulated zinc transporter in rice	In situ hybridization analysis revealed that OsZIP4 in Zn-deficient rice was expressed in shoots and roots, especially in phloem cells
OsZIP4	Os08g0207500	LOC_Os08g10630	shoot	OsZIP4, a novel zinc-regulated zinc transporter in rice	Furthermore, OsZIP4 transcripts were detected in the meristem of Zn-deficient roots and shoots
OsZIP4	Os08g0207500	LOC_Os08g10630	vascular bundle	A transporter for delivering zinc to the developing tiller bud and panicle in rice	Immunostaining analysis revealed that OsZIP4 was mainly expressed in phloem of diffuse vascular bundles (DVBs) in the nodes and the axillary meristem
OsZIP4	Os08g0207500	LOC_Os08g10630	growth	A transporter for delivering zinc to the developing tiller bud and panicle in rice	Mutation of OsZIP4 did not affect the total Zn uptake, but altered Zn distribution; less Zn was delivered to TB and new leaf, but more Zn was retained in the basal stems at the vegetative growth stage
OsZIP4	Os08g0207500	LOC_Os08g10630	vegetative	A transporter for delivering zinc to the developing tiller bud and panicle in rice	Mutation of OsZIP4 did not affect the total Zn uptake, but altered Zn distribution; less Zn was delivered to TB and new leaf, but more Zn was retained in the basal stems at the vegetative growth stage
OsZIP4	Os08g0207500	LOC_Os08g10630	meristem	A transporter for delivering zinc to the developing tiller bud and panicle in rice	Immunostaining analysis revealed that OsZIP4 was mainly expressed in phloem of diffuse vascular bundles (DVBs) in the nodes and the axillary meristem
OsZIP4	Os08g0207500	LOC_Os08g10630	reproductive	A transporter for delivering zinc to the developing tiller bud and panicle in rice	At the reproductive stage, mutation of OsZIP4 resulted in delayed panicles development, which is associated with decreased Zn distribution to the panicles
OsZIP4	Os08g0207500	LOC_Os08g10630	phloem	A transporter for delivering zinc to the developing tiller bud and panicle in rice	Immunostaining analysis revealed that OsZIP4 was mainly expressed in phloem of diffuse vascular bundles (DVBs) in the nodes and the axillary meristem
OsZIP4	Os08g0207500	LOC_Os08g10630	phloem	A transporter for delivering zinc to the developing tiller bud and panicle in rice	Collectively, OsZIP4 is involved in transporting Zn to the phloem of DVBs in the nodes for subsequent distribution to TBs and other developing tissues
OsZIP4	Os08g0207500	LOC_Os08g10630	axillary meristem	A transporter for delivering zinc to the developing tiller bud and panicle in rice	Immunostaining analysis revealed that OsZIP4 was mainly expressed in phloem of diffuse vascular bundles (DVBs) in the nodes and the axillary meristem
OsZIP4	Os08g0207500	LOC_Os08g10630	Zn distribution	A transporter for delivering zinc to the developing tiller bud and panicle in rice	Mutation of OsZIP4 did not affect the total Zn uptake, but altered Zn distribution; less Zn was delivered to TB and new leaf, but more Zn was retained in the basal stems at the vegetative growth stage
OsZIP4	Os08g0207500	LOC_Os08g10630	Zn distribution	A transporter for delivering zinc to the developing tiller bud and panicle in rice	At the reproductive stage, mutation of OsZIP4 resulted in delayed panicles development, which is associated with decreased Zn distribution to the panicles
OsZIP5	Os05g0472700	LOC_Os05g39560	growth	OsZIP5 is a plasma membrane zinc transporter in rice	OsZIP5 complemented the growth defect of a yeast Zn-uptake mutant, indicating that OsZIP5 is a Zn transporter
OsZIP5	Os05g0472700	LOC_Os05g39560	transporter	OsZIP5 is a plasma membrane zinc transporter in rice	OsZIP5 complemented the growth defect of a yeast Zn-uptake mutant, indicating that OsZIP5 is a Zn transporter
OsZIP5	Os05g0472700	LOC_Os05g39560	transporter	OsZIP5 is a plasma membrane zinc transporter in rice	OsZIP5 is a plasma membrane zinc transporter in rice
OsZIP5	Os05g0472700	LOC_Os05g39560	zinc	OsZIP5 is a plasma membrane zinc transporter in rice	OsZIP5 is a plasma membrane zinc transporter in rice
OsZIP5	Os05g0472700	LOC_Os05g39560	transporter	OsZIP4, a novel zinc-regulated zinc transporter in rice	Four distinct genes, OsZIP4, OsZIP5, OsZIP6, and OsZIP7 that exhibit sequence similarity to the rice ferrous ion transporter, OsIRT1, were isolated
OsZIP5	Os05g0472700	LOC_Os05g39560	root	ZINC TRANSPORTER5 and ZINC TRANSPORTER9 function synergistically in zinc/cadmium uptake.	The expression profiles of OsZIP5 and OsZIP9 overlap in the root epidermis and respond to the local Zn status in the root
OsZIP5	Os05g0472700	LOC_Os05g39560	growth	ZINC TRANSPORTER5 and ZINC TRANSPORTER9 function synergistically in zinc/cadmium uptake.	The decreased Zn/Cd levels and growth retardation in the oszip5 mutant are less severe than in the oszip9 mutant
OsZIP5	Os05g0472700	LOC_Os05g39560	epidermis	ZINC TRANSPORTER5 and ZINC TRANSPORTER9 function synergistically in zinc/cadmium uptake.	The expression profiles of OsZIP5 and OsZIP9 overlap in the root epidermis and respond to the local Zn status in the root
OsZIP6	Os05g0164800	LOC_Os05g07210	transporter	Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).	We have functionally characterized a novel transition metal ion transporter from rice, OsZIP6 (Oryza sativa zinc regulated transporter, iron regulated transporter-like protein 6)
OsZIP6	Os05g0164800	LOC_Os05g07210	iron	Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).	We have functionally characterized a novel transition metal ion transporter from rice, OsZIP6 (Oryza sativa zinc regulated transporter, iron regulated transporter-like protein 6)
OsZIP6	Os05g0164800	LOC_Os05g07210	zinc	Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).	We have functionally characterized a novel transition metal ion transporter from rice, OsZIP6 (Oryza sativa zinc regulated transporter, iron regulated transporter-like protein 6)
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	transporter	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	It suggested that the OsZIP7a and OsZIP8 might encode an iron and a zinc transporter protein in rice respectively
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	root	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	By semi-quantitative RT-PCR approach, it was found that the expression of OsZIP7a was significantly induced in rice roots by iron-deficiency, while that of OsZIP8 induced in both rice roots and shoots by zinc-deficiency
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	zinc	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	By semi-quantitative RT-PCR approach, it was found that the expression of OsZIP7a was significantly induced in rice roots by iron-deficiency, while that of OsZIP8 induced in both rice roots and shoots by zinc-deficiency
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	zinc	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	When expressed in yeast cells, OsZIP7a and OsZIP8 could complement an iron-uptake-deficient yeast mutant and a zinc-uptake-deficient yeast mutant respectively
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	zinc	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	It suggested that the OsZIP7a and OsZIP8 might encode an iron and a zinc transporter protein in rice respectively
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	shoot	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	By semi-quantitative RT-PCR approach, it was found that the expression of OsZIP7a was significantly induced in rice roots by iron-deficiency, while that of OsZIP8 induced in both rice roots and shoots by zinc-deficiency
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	iron	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	By semi-quantitative RT-PCR approach, it was found that the expression of OsZIP7a was significantly induced in rice roots by iron-deficiency, while that of OsZIP8 induced in both rice roots and shoots by zinc-deficiency
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	iron	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	When expressed in yeast cells, OsZIP7a and OsZIP8 could complement an iron-uptake-deficient yeast mutant and a zinc-uptake-deficient yeast mutant respectively
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	iron	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	It suggested that the OsZIP7a and OsZIP8 might encode an iron and a zinc transporter protein in rice respectively
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	shoot	Elemental Profiling of Rice FOX Lines Leads to Characterization of a New Zn Plasma Membrane Transporter, OsZIP7.	 OsZIP7 expression in Arabidopsis resulted in a 25% increase in shoot Zn concentrations compared to non-transformed plants
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	transporter	Elemental Profiling of Rice FOX Lines Leads to Characterization of a New Zn Plasma Membrane Transporter, OsZIP7.	 Among the most promising candidates, we identified two lines ovexpressing the metal cation transporter OsZIP7
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	plasma membrane	Elemental Profiling of Rice FOX Lines Leads to Characterization of a New Zn Plasma Membrane Transporter, OsZIP7.	 We further characterized OsZIP7 and showed that it is localized to the plasma membrane and is able to complement Zn transport defective (but not Fe defective) yeast mutants
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	xylem	OsZIP7 functions in xylem loading in roots and inter-vascular transfer in nodes to deliver Zn/Cd to grain in rice.	OsZIP7 functions in xylem loading in roots and inter-vascular transfer in nodes to deliver Zn/Cd to grain in rice.
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	xylem	OsZIP7 functions in xylem loading in roots and inter-vascular transfer in nodes to deliver Zn/Cd to grain in rice.	 Thus, OsZIP7 plays an integral role in xylem loading in roots and inter-vascular transfer in nodes to preferentially deliver Zn and Cd to developing tissues and rice grains
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	vascular bundle	OsZIP7 functions in xylem loading in roots and inter-vascular transfer in nodes to deliver Zn/Cd to grain in rice.	 OsZIP7 was expressed in parenchyma cells of vascular bundles in roots and nodes
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	grain	OsZIP7 functions in xylem loading in roots and inter-vascular transfer in nodes to deliver Zn/Cd to grain in rice.	OsZIP7 functions in xylem loading in roots and inter-vascular transfer in nodes to deliver Zn/Cd to grain in rice.
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	homeostasis	Physiological responses of rice ( Oryza sativa L.) oszip7 loss-of-function plants exposed to varying Zn concentrations 	 Our data suggest that OsZIP7 is important for Zn homeostasis under physiological Zn concentrations, and that Fe homeostasis might be affected due to loss of function of OsZIP7
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	transporter	Physiological responses of rice ( Oryza sativa L.) oszip7 loss-of-function plants exposed to varying Zn concentrations 	 Here we describe a Tos17 loss-of-function line for the Zn plasma membrane transporter OsZIP7 (oszip7)
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	plasma membrane	Physiological responses of rice ( Oryza sativa L.) oszip7 loss-of-function plants exposed to varying Zn concentrations 	 Here we describe a Tos17 loss-of-function line for the Zn plasma membrane transporter OsZIP7 (oszip7)
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	Fe	Physiological responses of rice ( Oryza sativa L.) oszip7 loss-of-function plants exposed to varying Zn concentrations 	 On the other hand, we found that Zn excess is more deleterious to oszip7 plants compared to wild type, which may be linked to secondary effects in concentrations of other elements such as Fe
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	Fe	Physiological responses of rice ( Oryza sativa L.) oszip7 loss-of-function plants exposed to varying Zn concentrations 	 Our data suggest that OsZIP7 is important for Zn homeostasis under physiological Zn concentrations, and that Fe homeostasis might be affected due to loss of function of OsZIP7
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	tolerance	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	zinc	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	zinc	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	 The yeast one-hybrid assay, transient transcriptional activity assay using the dual-luciferase reporter system and electrophoretic mobility shift assay demonstrated that OsNAC15 directly binds to the zinc deficiency-responsive element motifs in the promoters of OsZIP7 and OsZIP10 to repress their transcriptions
OsZIP7a|OsZIP7	Os05g0198400	LOC_Os05g10940	cadmium	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to OsZIP7 and OsZIP10 in Rice.
OsZIP8	Os07g0232800	LOC_Os07g12890	transporter	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice	The OsZIP8-GFP fusion proteins were localized to the plasma membrane, suggesting that OsZIP8 is a plasma membrane zinc transporter in rice
OsZIP8	Os07g0232800	LOC_Os07g12890	transporter	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice	Altogether, these results demonstrate that OsZIP8 is a zinc transporter that functions in Zn uptake and distribution
OsZIP8	Os07g0232800	LOC_Os07g12890	transporter	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice
OsZIP8	Os07g0232800	LOC_Os07g12890	transporter	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	It suggested that the OsZIP7a and OsZIP8 might encode an iron and a zinc transporter protein in rice respectively
OsZIP8	Os07g0232800	LOC_Os07g12890	shoot	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	By semi-quantitative RT-PCR approach, it was found that the expression of OsZIP7a was significantly induced in rice roots by iron-deficiency, while that of OsZIP8 induced in both rice roots and shoots by zinc-deficiency
OsZIP8	Os07g0232800	LOC_Os07g12890	root	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	By semi-quantitative RT-PCR approach, it was found that the expression of OsZIP7a was significantly induced in rice roots by iron-deficiency, while that of OsZIP8 induced in both rice roots and shoots by zinc-deficiency
OsZIP8	Os07g0232800	LOC_Os07g12890	shoot	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice	To investigate its transport in rice, we characterized OsZIP8, a rice ZIP (Zrt, Irt-like Protein) gene that is strongly up-regulated in shoots and roots under Zn deficiency
OsZIP8	Os07g0232800	LOC_Os07g12890	growth	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice	OsZIP8 could complement the growth defect of Zn-uptake yeast mutant
OsZIP8	Os07g0232800	LOC_Os07g12890	iron	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	By semi-quantitative RT-PCR approach, it was found that the expression of OsZIP7a was significantly induced in rice roots by iron-deficiency, while that of OsZIP8 induced in both rice roots and shoots by zinc-deficiency
OsZIP8	Os07g0232800	LOC_Os07g12890	iron	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	When expressed in yeast cells, OsZIP7a and OsZIP8 could complement an iron-uptake-deficient yeast mutant and a zinc-uptake-deficient yeast mutant respectively
OsZIP8	Os07g0232800	LOC_Os07g12890	iron	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	It suggested that the OsZIP7a and OsZIP8 might encode an iron and a zinc transporter protein in rice respectively
OsZIP8	Os07g0232800	LOC_Os07g12890	zinc	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	By semi-quantitative RT-PCR approach, it was found that the expression of OsZIP7a was significantly induced in rice roots by iron-deficiency, while that of OsZIP8 induced in both rice roots and shoots by zinc-deficiency
OsZIP8	Os07g0232800	LOC_Os07g12890	zinc	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	When expressed in yeast cells, OsZIP7a and OsZIP8 could complement an iron-uptake-deficient yeast mutant and a zinc-uptake-deficient yeast mutant respectively
OsZIP8	Os07g0232800	LOC_Os07g12890	zinc	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.)	It suggested that the OsZIP7a and OsZIP8 might encode an iron and a zinc transporter protein in rice respectively
OsZIP8	Os07g0232800	LOC_Os07g12890	zinc	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice	The OsZIP8-GFP fusion proteins were localized to the plasma membrane, suggesting that OsZIP8 is a plasma membrane zinc transporter in rice
OsZIP8	Os07g0232800	LOC_Os07g12890	zinc	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice	Altogether, these results demonstrate that OsZIP8 is a zinc transporter that functions in Zn uptake and distribution
OsZIP8	Os07g0232800	LOC_Os07g12890	zinc	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice
OsZIP8	Os07g0232800	LOC_Os07g12890	root	Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice	To investigate its transport in rice, we characterized OsZIP8, a rice ZIP (Zrt, Irt-like Protein) gene that is strongly up-regulated in shoots and roots under Zn deficiency
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	root	ZINC TRANSPORTER5 and ZINC TRANSPORTER9 function synergistically in zinc/cadmium uptake.	The expression profiles of OsZIP5 and OsZIP9 overlap in the root epidermis and respond to the local Zn status in the root
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	growth	ZINC TRANSPORTER5 and ZINC TRANSPORTER9 function synergistically in zinc/cadmium uptake.	The decreased Zn/Cd levels and growth retardation in the oszip5 mutant are less severe than in the oszip9 mutant
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	shoot	ZINC TRANSPORTER5 and ZINC TRANSPORTER9 function synergistically in zinc/cadmium uptake.	However, OsZIP9 is also regulated by systemic signals of Zn status from the shoot
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	epidermis	ZINC TRANSPORTER5 and ZINC TRANSPORTER9 function synergistically in zinc/cadmium uptake.	The expression profiles of OsZIP5 and OsZIP9 overlap in the root epidermis and respond to the local Zn status in the root
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	root	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	root	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	Furthermore, OsZIP9 was expressed in the exodermis and endodermis of root mature regions
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	root	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	For plants grown in a hydroponic solution with low Zn concentration, knockout of OsZIP9 significantly reduced plant growth, which was accompanied by decreased Zn concentrations in both the root and shoot
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	root	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	Combined, these results indicate that OsZIP9 localized at the root exodermis and endodermis functions as an influx transporter of Zn and contributes to Zn uptake under Zn-limited conditions in rice
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	growth	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	Expression pattern analysis showed that OsZIP9 was mainly expressed in the roots throughout all growth stages and its expression was up-regulated by Zn-deficiency
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	shoot	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	For plants grown in a hydroponic solution with low Zn concentration, knockout of OsZIP9 significantly reduced plant growth, which was accompanied by decreased Zn concentrations in both the root and shoot
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	plant growth	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	For plants grown in a hydroponic solution with low Zn concentration, knockout of OsZIP9 significantly reduced plant growth, which was accompanied by decreased Zn concentrations in both the root and shoot
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	transporter	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	transporter	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	Combined, these results indicate that OsZIP9 localized at the root exodermis and endodermis functions as an influx transporter of Zn and contributes to Zn uptake under Zn-limited conditions in rice
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	plasma membrane	The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions.	OsZIP9 was mainly localized to the plasma membrane and showed transport activity for Zn in yeast
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	root	A high activity zinc transporter OsZIP9 mediates zinc uptake in rice.	Taken together, these results show that OsZIP9 is an important influx transporter responsible for uptake of Zn and Co from external media into root cells
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	growth	A high activity zinc transporter OsZIP9 mediates zinc uptake in rice.	OsZIP9 knockout rice plants showed a significant reduction in growth at low Zn concentration, but could be rescued by high Zn supply
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	grain	A high activity zinc transporter OsZIP9 mediates zinc uptake in rice.	Natural variation of OsZIP9 expression level is highly associated with Zn content in milled grain among rice varieties in the germplasm collection
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	zinc	A high activity zinc transporter OsZIP9 mediates zinc uptake in rice.	A high activity zinc transporter OsZIP9 mediates zinc uptake in rice.
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	transporter	A high activity zinc transporter OsZIP9 mediates zinc uptake in rice.	A high activity zinc transporter OsZIP9 mediates zinc uptake in rice.
OsZIP9	Os05g0472400|Os05g0472500	LOC_Os05g39540	transporter	A high activity zinc transporter OsZIP9 mediates zinc uptake in rice.	Taken together, these results show that OsZIP9 is an important influx transporter responsible for uptake of Zn and Co from external media into root cells
OsZOU-1|bHLH144	Os04g0429400	LOC_Os04g35010	seed development	Identification of ZHOUPI Orthologs in Rice Involved in Endosperm Development and Cuticle Formation.	The over-expression of OsZOU-1 severely disrupts both seed development and plant growth in transgenic rice lines, as plants in which this gene has been knocked down failed in the separation of endosperm from embryo and cuticle formation during seed development.
OsZOU-1|bHLH144	Os04g0429400	LOC_Os04g35010	plant growth	Identification of ZHOUPI Orthologs in Rice Involved in Endosperm Development and Cuticle Formation.	The over-expression of OsZOU-1 severely disrupts both seed development and plant growth in transgenic rice lines, as plants in which this gene has been knocked down failed in the separation of endosperm from embryo and cuticle formation during seed development.
OsZOU-1|bHLH144	Os04g0429400	LOC_Os04g35010	endosperm development	Identification of ZHOUPI Orthologs in Rice Involved in Endosperm Development and Cuticle Formation.	The results of this study therefore suggest that OsZOU-1 is orthologous to the AtZOU, and regulates both endosperm development and cuticle formation in rice.
OsZOU-1|bHLH144	Os04g0429400	LOC_Os04g35010	cuticle formation	Identification of ZHOUPI Orthologs in Rice Involved in Endosperm Development and Cuticle Formation.	The results of this study therefore suggest that OsZOU-1 is orthologous to the AtZOU, and regulates both endosperm development and cuticle formation in rice.
OVP1	Os06g0644200	LOC_Os06g43660	cold stress	OVP1, a vacuolar H+-translocating inorganic pyrophosphatase (V-PPase), overexpression improved rice cold tolerance	Quantitative reverse transcriptase-polymerase chain reaction analysis (RT-qPCR) showed that OVP1 was induced by cold stress
OVP1	Os06g0644200	LOC_Os06g43660	seedling	OVP1, a vacuolar H+-translocating inorganic pyrophosphatase (V-PPase), overexpression improved rice cold tolerance	OVP1 overexpression resulted in enhanced cold tolerance in transgenic rice, which was related to an increased integrity of cell membrane, decreased MDA content and accumulation of proline to higher level as compared with wild type rice seedlings
OVP1	Os06g0644200	LOC_Os06g43660	cold tolerance	OVP1, a vacuolar H+-translocating inorganic pyrophosphatase (V-PPase), overexpression improved rice cold tolerance	OVP1 overexpression resulted in enhanced cold tolerance in transgenic rice, which was related to an increased integrity of cell membrane, decreased MDA content and accumulation of proline to higher level as compared with wild type rice seedlings
OVP1	Os06g0644200	LOC_Os06g43660	cold tolerance	OVP1, a vacuolar H+-translocating inorganic pyrophosphatase (V-PPase), overexpression improved rice cold tolerance	OVP1, a vacuolar H+-translocating inorganic pyrophosphatase (V-PPase), overexpression improved rice cold tolerance
OVP2	Os06g0178900	LOC_Os06g08080	shoot	Isolation and characterization of cDNAs encoding vacuolar H+-pyrophosphatase isoforms from rice (Oryza sativa L.)	Northern analysis indicates that theOVP1 andOVP2 are also expressed in intact rice plants andOVP2 shows higher expression in the calli than the roots and shoots, compared toOVP1
OVP2	Os06g0178900	LOC_Os06g08080	root	Isolation and characterization of cDNAs encoding vacuolar H+-pyrophosphatase isoforms from rice (Oryza sativa L.)	Northern analysis indicates that theOVP1 andOVP2 are also expressed in intact rice plants andOVP2 shows higher expression in the calli than the roots and shoots, compared toOVP1
OVP3	Os02g0802500	LOC_Os02g55890	salt	Expression of vacuolar H+-pyrophosphatase (OVP3) is under control of an anoxia-inducible promoter in rice	Salt and cold treatments had little effect on OVP3 promoter-driven GUS expression when compared to the anoxic treatment
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	homeostasis	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)	Together, OZT1 is a CDF family vacuolar zinc transporter conferring tolerance to Zn(2+) and Cd(2+) stress, which is important to transporting and homeostasis of Zn, Cd or other heavy metals in plants
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	transporter	Molecular characterization of a rice metal tolerance protein, OsMTP1	Taken together, our results show that OsMTP1 is a bivalent cation transporter localized in the cell membrane, which is necessary for efficient translocation of Zn, Cd and other heavy metals, and maintain ion homeostasis in plant
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	Al tolerance	Functional analysis of the rice vacuolar zinc transporter OsMTP1	OsMTP1 is a member of the cation diffusion facilitator (CDF)/metal tolerance protein (MTP) family of metal cation transporters in Oryza sativa, which is closely related to Arabidopsis thaliana MTP1
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	homeostasis	Molecular characterization of a rice metal tolerance protein, OsMTP1	Taken together, our results show that OsMTP1 is a bivalent cation transporter localized in the cell membrane, which is necessary for efficient translocation of Zn, Cd and other heavy metals, and maintain ion homeostasis in plant
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	growth	Functional analysis of the rice vacuolar zinc transporter OsMTP1	OsMTP1 alleviated, to some extent, the Co sensitivity of this mutant, rescued the Fe hypersensitivity of the ccc1 mutant at low Fe concentrations, and restored growth of the Cd-hypersensitive mutant ycf1 at low Cd concentrations
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	seedling	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)	The OZT1 expression was significantly induced both in the seedlings of japonica rice Nipponbare and indica rice IR26 in response to Zn(2+) and Cd(2+) treatments
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	growth	Molecular characterization of a rice metal tolerance protein, OsMTP1	OsMTP1 expression increased tolerance to Zn, Cd, and Ni in wild-type yeast BY4741 during the exponential growth phase
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	seedling	Molecular characterization of a rice metal tolerance protein, OsMTP1	OsMTP1 dsRNAi mediated by transgenic assay in rice seedlings resulted in heavy metal sensitivity and changed the heavy metal accumulation in different organs of mature rice under low-concentration heavy metal stress
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	transporter	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)	In this research, a full length cDNA named Oryza sativa Zn Transporter 1 (OZT1) that closely related to rat ZnT-2 (Zn Transporter 2) gene was isolated from rice
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	transporter	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)	Together, OZT1 is a CDF family vacuolar zinc transporter conferring tolerance to Zn(2+) and Cd(2+) stress, which is important to transporting and homeostasis of Zn, Cd or other heavy metals in plants
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	transporter	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	zinc	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)	Together, OZT1 is a CDF family vacuolar zinc transporter conferring tolerance to Zn(2+) and Cd(2+) stress, which is important to transporting and homeostasis of Zn, Cd or other heavy metals in plants
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	zinc	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	zinc	Functional analysis of the rice vacuolar zinc transporter OsMTP1	Functional analysis of the rice vacuolar zinc transporter OsMTP1
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	transporter	Functional analysis of the rice vacuolar zinc transporter OsMTP1	OsMTP1 is a member of the cation diffusion facilitator (CDF)/metal tolerance protein (MTP) family of metal cation transporters in Oryza sativa, which is closely related to Arabidopsis thaliana MTP1
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	transporter	Functional analysis of the rice vacuolar zinc transporter OsMTP1	Functional analysis of the rice vacuolar zinc transporter OsMTP1
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	Al tolerance	Molecular characterization of a rice metal tolerance protein, OsMTP1	A cDNA clone, encoding the rice homolog of Metal Tolerance Protein (OsMTP1), was induced by Cd treatment
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	Al tolerance	Molecular characterization of a rice metal tolerance protein, OsMTP1	Molecular characterization of a rice metal tolerance protein, OsMTP1
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	growth	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	Heterologous expression of OsMTP1 in tobacco resulted in the reduction of Cd stress-induced phytotoxic effects, including growth inhibition, lipid peroxidation, and cell death
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	growth	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	Together, findings of our research suggest that the transgenic tobacco plants overexpressing OsMTP1 with its hyperaccumulating activity and increased growth rate could be useful for future phytoremediation applications to clean up the Cd-contaminated soil
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	tolerance	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	tolerance	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	The transgenic plants also showed moderate tolerance and accumulation of arsenic (As) upon exogenous As stress, signifying broad substrate specificity of OsMTP1
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	cell death	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	Heterologous expression of OsMTP1 in tobacco resulted in the reduction of Cd stress-induced phytotoxic effects, including growth inhibition, lipid peroxidation, and cell death
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	Al tolerance	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	Al tolerance	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	The 1257 bp coding DNA sequence (CDS) of OsMTP1 encodes a 46 kDa protein belonging to the cation diffusion facilitator (CDF) or metal tolerance/transport protein (MTP) family
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	stress	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	The OsMTP1 transcript in rice plant was found to respond during external Cd stress
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	cadmium	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation
OZT1|OsMTP1	Os05g0128400	LOC_Os05g03780	growth rate	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation	Together, findings of our research suggest that the transgenic tobacco plants overexpressing OsMTP1 with its hyperaccumulating activity and increased growth rate could be useful for future phytoremediation applications to clean up the Cd-contaminated soil
P31comet|OsBVF1	Os05g0251400	LOC_Os05g16250	map-based cloning	Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice.	In this study, we identified a sterile rice mutant and cloned a new meiotic gene, OsBVF1 (Bivalent Formation 1) by map-based cloning
P31comet|OsBVF1	Os05g0251400	LOC_Os05g16250	sterile	Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice.	In this study, we identified a sterile rice mutant and cloned a new meiotic gene, OsBVF1 (Bivalent Formation 1) by map-based cloning
P31comet|OsBVF1	Os05g0251400	LOC_Os05g16250	meiosis	Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice.	Molecular genetics and cytological approaches were carried out to address the function of OsBVF1 in meiosis
P31comet|OsBVF1	Os05g0251400	LOC_Os05g16250	meiotic	Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice.	In this study, we identified a sterile rice mutant and cloned a new meiotic gene, OsBVF1 (Bivalent Formation 1) by map-based cloning
P31comet|OsBVF1	Os05g0251400	LOC_Os05g16250	meiotic	Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice.	Our study demonstrates that OsBVF1 is a novel plant-conserved factor involved in meiotic recombination in rice, providing a new insight into understanding of meiotic progression regulation
P31comet|OsBVF1	Os05g0251400	LOC_Os05g16250	meiotic recombination	Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice.	Our study demonstrates that OsBVF1 is a novel plant-conserved factor involved in meiotic recombination in rice, providing a new insight into understanding of meiotic progression regulation
PACP	Os03g0108700	LOC_Os03g01840	transcription factor	A coiled-coil protein associates Polycomb Repressive Complex 2 with KNOX/BELL transcription factors to maintain silencing of cell differentiation-promoting genes in the shoot apex.	 PACP is involved in the recruitment or stabilization of PRC2 to genes targeted by KNOX/BELL transcription factors to maintain H3K27me3 and gene repression in dividing cells of the shoot apex
PACP	Os03g0108700	LOC_Os03g01840	shoot	A coiled-coil protein associates Polycomb Repressive Complex 2 with KNOX/BELL transcription factors to maintain silencing of cell differentiation-promoting genes in the shoot apex.	 We show that PACP is required for the repression of cell differentiation-promoting genes targeted by a rice KNOX1 protein in the shoot apical meristem
PACP	Os03g0108700	LOC_Os03g01840	shoot	A coiled-coil protein associates Polycomb Repressive Complex 2 with KNOX/BELL transcription factors to maintain silencing of cell differentiation-promoting genes in the shoot apex.	 PACP is involved in the recruitment or stabilization of PRC2 to genes targeted by KNOX/BELL transcription factors to maintain H3K27me3 and gene repression in dividing cells of the shoot apex
PACP	Os03g0108700	LOC_Os03g01840	meristem	A coiled-coil protein associates Polycomb Repressive Complex 2 with KNOX/BELL transcription factors to maintain silencing of cell differentiation-promoting genes in the shoot apex.	 We show that PACP is required for the repression of cell differentiation-promoting genes targeted by a rice KNOX1 protein in the shoot apical meristem
PACP	Os03g0108700	LOC_Os03g01840	shoot apical meristem	A coiled-coil protein associates Polycomb Repressive Complex 2 with KNOX/BELL transcription factors to maintain silencing of cell differentiation-promoting genes in the shoot apex.	 We show that PACP is required for the repression of cell differentiation-promoting genes targeted by a rice KNOX1 protein in the shoot apical meristem
PAD4|OsPAD4	Os11g0195500	LOC_Os11g09010	bacteria blight disease	Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions	Suppression of OsPAD4 by RNA interference (RNAi) increased rice susceptibility to the biotrophic pathogen Xanthomonas oryzae pv. oryzae (Xoo), which causes bacteria blight disease in local tissue.
PAD4|OsPAD4	Os11g0195500	LOC_Os11g09010	blight disease	Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions	Suppression of OsPAD4 by RNA interference (RNAi) increased rice susceptibility to the biotrophic pathogen Xanthomonas oryzae pv. oryzae (Xoo), which causes bacteria blight disease in local tissue.
PAD4|OsPAD4	Os11g0195500	LOC_Os11g09010	disease	Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions	Suppression of OsPAD4 by RNA interference (RNAi) increased rice susceptibility to the biotrophic pathogen Xanthomonas oryzae pv. oryzae (Xoo), which causes bacteria blight disease in local tissue.
PAD4|OsPAD4	Os11g0195500	LOC_Os11g09010	JA	Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions	The increased susceptibility to Xoo was associated with reduced accumulation of jasmonic acid (JA) and phytoalexin momilactone A (MOA).
PAD4|OsPAD4	Os11g0195500	LOC_Os11g09010	jasmonic acid	Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions	The increased susceptibility to Xoo was associated with reduced accumulation of jasmonic acid (JA) and phytoalexin momilactone A (MOA).
PAD4|OsPAD4	Os11g0195500	LOC_Os11g09010	jasmonic acid	Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions	Exogenous application of JA complemented the phenotype of OsPAD4-RNAi plants in response to Xoo
PAIR1	Os03g0106300	LOC_Os03g01590	meiosis	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Transcripts of UDT1, which functions in tapetum development during early meiosis, were reduced in dtm1 anthers, as were those of PAIR1, which is involved in chromosome pairing and synapsis during meiosis
PAIR1	Os03g0106300	LOC_Os03g01590	tapetum	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Transcripts of UDT1, which functions in tapetum development during early meiosis, were reduced in dtm1 anthers, as were those of PAIR1, which is involved in chromosome pairing and synapsis during meiosis
PAIR1	Os03g0106300	LOC_Os03g01590	tapetum	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	These results, together with their mutant phenotypes, suggest that DTM1 plays important roles in the ER membrane during early tapetum development, functioning after MSP1 and before UDT1, and also in meiocyte development, after MEL1 and before PAIR1
PAIR1	Os03g0106300	LOC_Os03g01590	meiotic	The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis	However, chromosomal fragmentation frequent in plant meiotic mutants was never observed in all of the pair1 meiocytes
PAIR1	Os03g0106300	LOC_Os03g01590	meiosis	Central region component1, a novel synaptonemal complex component, is essential for meiotic recombination initiation in rice	CRC1 interacts with homologous pairing aberration in rice meiosis1 (PAIR1) in vitro, suggesting that these proteins act as a complex to promote DSB formation
PAIR1	Os03g0106300	LOC_Os03g01590	flower	The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis	Expression of the PAIR1 gene was detected in the early stages of flower development, in which the majority of the sporocytes had not entered meiosis
PAIR1	Os03g0106300	LOC_Os03g01590	anther	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Transcripts of UDT1, which functions in tapetum development during early meiosis, were reduced in dtm1 anthers, as were those of PAIR1, which is involved in chromosome pairing and synapsis during meiosis
PAIR1	Os03g0106300	LOC_Os03g01590	anther	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Moreover, transcripts of DTM1 were reduced in msp1 mutant anthers, but not in udt1 and pair1 mutants
PAIR1	Os03g0106300	LOC_Os03g01590	meiosis	The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis	We have identified and characterized a novel gene, PAIR1 (HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1), required for homologous chromosome pairing and cytokinesis in male and female meiocytes of rice (Oryza sativa)
PAIR1	Os03g0106300	LOC_Os03g01590	meiosis	The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis	The pair1 mutation, tagged by the endogenous retrotransposon Tos17, exhibited meiosis-specific defects and resulted in complete sterility in male and female gametes
PAIR1	Os03g0106300	LOC_Os03g01590	meiosis	The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis	Expression of the PAIR1 gene was detected in the early stages of flower development, in which the majority of the sporocytes had not entered meiosis
PAIR1	Os03g0106300	LOC_Os03g01590	meiosis	The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis	These observations clarify that the PAIR1 protein plays an essential role in establishment of homologous chromosome pairing in rice meiosis
PAIR1	Os03g0106300	LOC_Os03g01590	sterility	The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis	The pair1 mutation, tagged by the endogenous retrotransposon Tos17, exhibited meiosis-specific defects and resulted in complete sterility in male and female gametes
PAIR2	Os09g0506800	LOC_Os09g32930	meiotic	OsAM1 is required for leptotene-zygotene transition in rice	In the absence of OsAM1, many other critical meiotic components, including PAIR2, ZEP1 and OsMER3, could not be correctly installed onto chromosomes
PAIR2	Os09g0506800	LOC_Os09g32930	meiosis	OsAM1 is required for leptotene-zygotene transition in rice	In contrast, in pair2, Osmer3 and zep1 mutants, OsAM1 could be loaded normally, suggesting that OsAM1 plays a fundamental role in building the proper chromosome structure at the beginning of meiosis
PAIR2	Os09g0506800	LOC_Os09g32930	meiotic	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	Finally, we found that the centromeric localization of OsSGO1 depends on OsAM1, not other meiotic proteins such as OsREC8, PAIR2, OsMER3, or ZEP1
PAIR2	Os09g0506800	LOC_Os09g32930	reproductive	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis	Mature PAIR2 mRNA and several splicing variants were found to be highly expressed in wild-type reproductive tissues, and lower expression was also detected in vegetative tissues
PAIR2	Os09g0506800	LOC_Os09g32930	meiotic	Central region component1, a novel synaptonemal complex component, is essential for meiotic recombination initiation in rice	We found that CRC1 is also essential for the recruitment of PAIR2 onto meiotic chromosomes
PAIR2	Os09g0506800	LOC_Os09g32930	pollen	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis	In situ hybridization and BrdU incorporation experiments revealed that PAIR2 expression is specifically enhanced in male and female meiocytes, but not in those at pre-meiotic S phase or in the pollen maturation stages
PAIR2	Os09g0506800	LOC_Os09g32930	meiosis	PAIR2 is essential for homologous chromosome synapsis in rice meiosis I	The PAIR2 gene is required for homologous chromosome synapsis at meiosis I in rice (Oryza sativa L
PAIR2	Os09g0506800	LOC_Os09g32930	meiosis	PAIR2 is essential for homologous chromosome synapsis in rice meiosis I	However, PAIR2 does not play a role in AE formation, sister chromatid cohesion at centromeres or kinetochore assembly in meiosis I of rice
PAIR2	Os09g0506800	LOC_Os09g32930	meiosis	PAIR2 is essential for homologous chromosome synapsis in rice meiosis I	PAIR2 is essential for homologous chromosome synapsis in rice meiosis I
PAIR2	Os09g0506800	LOC_Os09g32930	meiotic	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis	In situ hybridization and BrdU incorporation experiments revealed that PAIR2 expression is specifically enhanced in male and female meiocytes, but not in those at pre-meiotic S phase or in the pollen maturation stages
PAIR2	Os09g0506800	LOC_Os09g32930	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Several key meiotic proteins, including ZEP1 and OsMER3, were not loaded normally onto chromosomes in Oscom1 mutants, whereas the localization of OsREC8, PAIR2 and PAIR3 seemed to be normal
PAIR2	Os09g0506800	LOC_Os09g32930	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Moreover, OsCOM1 was loaded normally onto meiotic chromosomes in Osrec8, zep1 and Osmer3 mutants, but could not be properly loaded in Osam1, pair2 and OsSPO11-1(RNAi) plants
PAIR2	Os09g0506800	LOC_Os09g32930	vegetative	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis	Mature PAIR2 mRNA and several splicing variants were found to be highly expressed in wild-type reproductive tissues, and lower expression was also detected in vegetative tissues
PAIR2	Os09g0506800	LOC_Os09g32930	meiosis	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis	To elucidate the genetic system that establishes homologous chromosome pairing in monocot plants, we have isolated an asynaptic mutant of rice, designated pair2 (homologous pairing aberration in rice meiosis 2), in which 24 completely unpaired univalents are observed at pachytene and diakinesis
PAIR2	Os09g0506800	LOC_Os09g32930	meiosis	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis	The results obtained in this study suggest that the PAIR2 gene is essential for homologous chromosome pairing in meiosis, as in the case of the genes ASY1 and HOP1
PAIR2	Os09g0506800	LOC_Os09g32930	meiosis	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis
PAIR3	Os10g0405500	LOC_Os10g26560	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Several key meiotic proteins, including ZEP1 and OsMER3, were not loaded normally onto chromosomes in Oscom1 mutants, whereas the localization of OsREC8, PAIR2 and PAIR3 seemed to be normal
PAIR3	Os10g0405500	LOC_Os10g26560	meiosis	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis	In this study, we identified a novel gene, PAIR3 (HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 3), required for homologous chromosome pairing and synapsis in rice
PAIR3	Os10g0405500	LOC_Os10g26560	meiosis	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis	PAIR3 is preferentially expressed in reproductive organs, especially in pollen mother cells and the ovule tissues during meiosis
PAIR3	Os10g0405500	LOC_Os10g26560	meiosis	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis	Our results suggest that PAIR3 plays a crucial role in homologous chromosome pairing and synapsis in meiosis
PAIR3	Os10g0405500	LOC_Os10g26560	meiosis	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis
PAIR3	Os10g0405500	LOC_Os10g26560	sterility	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis	Two independent alleles, designated pair3-1 and pair3-2, were identified in our T-DNA insertional mutant library which could not form bivalents due to failure of homologous chromosome pairing and synapsis at diakinesis, resulting in sterility in both male and female gametes
PAIR3	Os10g0405500	LOC_Os10g26560	pollen	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis	PAIR3 is preferentially expressed in reproductive organs, especially in pollen mother cells and the ovule tissues during meiosis
PAIR3	Os10g0405500	LOC_Os10g26560	reproductive	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis	PAIR3 is preferentially expressed in reproductive organs, especially in pollen mother cells and the ovule tissues during meiosis
PAKRP1|OsKRP1	Os04g0350300	LOC_Os04g28260	grain	Salicylic acid antagonizes abscisic acid inhibition of shoot growth and cell cycle progression in rice	Rice plants overexpressing OsKRP4 had short culms and significantly reduced seed fertility, and overexpression of OsKRP1 inhibited the development of embryos and pollen grains
PAKRP1|OsKRP1	Os04g0350300	LOC_Os04g28260	development	Salicylic acid antagonizes abscisic acid inhibition of shoot growth and cell cycle progression in rice	Rice plants overexpressing OsKRP4 had short culms and significantly reduced seed fertility, and overexpression of OsKRP1 inhibited the development of embryos and pollen grains
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	sheath	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	OsPAL4 clusters with three additional OsPAL genes that co-localize with QTL for bacterial blight and sheath blight disease resistance on rice chromosome 2
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	sheath	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	The heterozygous ospal4 mutant line exhibited increased susceptibility to three distinct rice diseases, bacterial blight, sheath blight, and rice blast
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	disease	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	disease	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	OsPAL4 clusters with three additional OsPAL genes that co-localize with QTL for bacterial blight and sheath blight disease resistance on rice chromosome 2
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	disease	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	Overall, these results suggest that OsPAL4 and possibly OsPAL6 are key contributors to resistance governed by QTL and are potential breeding targets for improved broad-spectrum disease resistance in rice
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	blast	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	The heterozygous ospal4 mutant line exhibited increased susceptibility to three distinct rice diseases, bacterial blight, sheath blight, and rice blast
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	blast	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	OsPAL6 co-localizes with a QTL for rice blast resistance, and is down-regulated in the ospal4 mutant line; this may explain enhanced susceptibility to Magnoporthe oryzae
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	blight	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	OsPAL4 clusters with three additional OsPAL genes that co-localize with QTL for bacterial blight and sheath blight disease resistance on rice chromosome 2
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	breeding	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	Overall, these results suggest that OsPAL4 and possibly OsPAL6 are key contributors to resistance governed by QTL and are potential breeding targets for improved broad-spectrum disease resistance in rice
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	resistance	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	OsPAL4 clusters with three additional OsPAL genes that co-localize with QTL for bacterial blight and sheath blight disease resistance on rice chromosome 2
PAL|OsPAL4|OsPAL1	Os02g0627100	LOC_Os02g41680	resistance	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	Overall, these results suggest that OsPAL4 and possibly OsPAL6 are key contributors to resistance governed by QTL and are potential breeding targets for improved broad-spectrum disease resistance in rice
PANDA	Os07g0175100	LOC_Os07g07880	grain	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.
PANDA	Os07g0175100	LOC_Os07g07880	grain	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	 Mutation of PANDA caused reduced panicle number but increased grain size in rice, while transgenic plants overexpressing this gene showed the opposite phenotypic change
PANDA	Os07g0175100	LOC_Os07g07880	grain	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	 Among the target genes, both OsMADS55 and OsEMF1 were negative regulators of panicle number but positive regulators of grain size, partly explaining the involvement of PANDA in balancing panicle number and grain size
PANDA	Os07g0175100	LOC_Os07g07880	grain	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	 Moreover, moderate overexpression of PANDA driven by its own promoter in the indica rice cultivar can increase grain yield
PANDA	Os07g0175100	LOC_Os07g07880	grain size	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.
PANDA	Os07g0175100	LOC_Os07g07880	grain size	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	 Mutation of PANDA caused reduced panicle number but increased grain size in rice, while transgenic plants overexpressing this gene showed the opposite phenotypic change
PANDA	Os07g0175100	LOC_Os07g07880	grain size	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	 Among the target genes, both OsMADS55 and OsEMF1 were negative regulators of panicle number but positive regulators of grain size, partly explaining the involvement of PANDA in balancing panicle number and grain size
PANDA	Os07g0175100	LOC_Os07g07880	panicle	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.
PANDA	Os07g0175100	LOC_Os07g07880	panicle	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	 Mutation of PANDA caused reduced panicle number but increased grain size in rice, while transgenic plants overexpressing this gene showed the opposite phenotypic change
PANDA	Os07g0175100	LOC_Os07g07880	panicle	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	 Among the target genes, both OsMADS55 and OsEMF1 were negative regulators of panicle number but positive regulators of grain size, partly explaining the involvement of PANDA in balancing panicle number and grain size
PANDA	Os07g0175100	LOC_Os07g07880	grain yield	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	 Moreover, moderate overexpression of PANDA driven by its own promoter in the indica rice cultivar can increase grain yield
PANDA	Os07g0175100	LOC_Os07g07880	yield	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice.	 Moreover, moderate overexpression of PANDA driven by its own promoter in the indica rice cultivar can increase grain yield
PAY1	Os08g0407200	LOC_Os08g31470	panicle	PAY1 improves plant architecture and enhances grain yield in rice.	Transgenic plants over-expressing PAY1 had twice the number of grains per panicle and consequently produced nearly 38% more grain yield per plant than control plants
PAY1	Os08g0407200	LOC_Os08g31470	grain	PAY1 improves plant architecture and enhances grain yield in rice.	PAY1 improves plant architecture and enhances grain yield in rice.
PAY1	Os08g0407200	LOC_Os08g31470	grain	PAY1 improves plant architecture and enhances grain yield in rice.	Transgenic plants over-expressing PAY1 had twice the number of grains per panicle and consequently produced nearly 38% more grain yield per plant than control plants
PAY1	Os08g0407200	LOC_Os08g31470	grain	PAY1 improves plant architecture and enhances grain yield in rice.	Furthermore, introgression of PAY1 into elite rice cultivars, using marker-assisted background selection, dramatically increased grain yield compared with the recipient parents
PAY1	Os08g0407200	LOC_Os08g31470	grains per panicle	PAY1 improves plant architecture and enhances grain yield in rice.	Transgenic plants over-expressing PAY1 had twice the number of grains per panicle and consequently produced nearly 38% more grain yield per plant than control plants
PAY1	Os08g0407200	LOC_Os08g31470	grain yield	PAY1 improves plant architecture and enhances grain yield in rice.	PAY1 improves plant architecture and enhances grain yield in rice.
PAY1	Os08g0407200	LOC_Os08g31470	grain yield	PAY1 improves plant architecture and enhances grain yield in rice.	Transgenic plants over-expressing PAY1 had twice the number of grains per panicle and consequently produced nearly 38% more grain yield per plant than control plants
PAY1	Os08g0407200	LOC_Os08g31470	grain yield	PAY1 improves plant architecture and enhances grain yield in rice.	Furthermore, introgression of PAY1 into elite rice cultivars, using marker-assisted background selection, dramatically increased grain yield compared with the recipient parents
PAY1	Os08g0407200	LOC_Os08g31470	yield	PAY1 improves plant architecture and enhances grain yield in rice.	PAY1 improves plant architecture and enhances grain yield in rice.
PAY1	Os08g0407200	LOC_Os08g31470	yield	PAY1 improves plant architecture and enhances grain yield in rice.	Transgenic plants over-expressing PAY1 had twice the number of grains per panicle and consequently produced nearly 38% more grain yield per plant than control plants
PAY1	Os08g0407200	LOC_Os08g31470	yield	PAY1 improves plant architecture and enhances grain yield in rice.	Furthermore, introgression of PAY1 into elite rice cultivars, using marker-assisted background selection, dramatically increased grain yield compared with the recipient parents
PAY1	Os08g0407200	LOC_Os08g31470	architecture	PAY1 improves plant architecture and enhances grain yield in rice.	PAY1 improves plant architecture and enhances grain yield in rice.
PAY1	Os08g0407200	LOC_Os08g31470	architecture	PAY1 improves plant architecture and enhances grain yield in rice.	Mechanistically, PAY1 could improve plant architecture via affecting polar auxin transport activity and altering endogenous indole-3-acetic acid distribution
PAY1	Os08g0407200	LOC_Os08g31470	architecture	PAY1 improves plant architecture and enhances grain yield in rice.	Overall, these results demonstrated that PAY1 could be a new beneficial genetic resource for shaping ideal plant architecture and breeding high-yielding rice varieties
PAY1	Os08g0407200	LOC_Os08g31470	auxin	PAY1 improves plant architecture and enhances grain yield in rice.	Mechanistically, PAY1 could improve plant architecture via affecting polar auxin transport activity and altering endogenous indole-3-acetic acid distribution
PAY1	Os08g0407200	LOC_Os08g31470	breeding	PAY1 improves plant architecture and enhances grain yield in rice.	Overall, these results demonstrated that PAY1 could be a new beneficial genetic resource for shaping ideal plant architecture and breeding high-yielding rice varieties
PAY1	Os08g0407200	LOC_Os08g31470	auxin transport	PAY1 improves plant architecture and enhances grain yield in rice.	Mechanistically, PAY1 could improve plant architecture via affecting polar auxin transport activity and altering endogenous indole-3-acetic acid distribution
PAY1	Os08g0407200	LOC_Os08g31470	plant architecture	PAY1 improves plant architecture and enhances grain yield in rice.	PAY1 improves plant architecture and enhances grain yield in rice.
PAY1	Os08g0407200	LOC_Os08g31470	plant architecture	PAY1 improves plant architecture and enhances grain yield in rice.	Mechanistically, PAY1 could improve plant architecture via affecting polar auxin transport activity and altering endogenous indole-3-acetic acid distribution
PAY1	Os08g0407200	LOC_Os08g31470	plant architecture	PAY1 improves plant architecture and enhances grain yield in rice.	Overall, these results demonstrated that PAY1 could be a new beneficial genetic resource for shaping ideal plant architecture and breeding high-yielding rice varieties
Pb1	Os11g0579200	LOC_Os11g37050	magnaporthe oryzae	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Pb1 encodes a coiled-coil-nucleotide-binding site-leucine-rich repeat (CC-NB-LRR) protein and confers durable, broad-spectrum resistance to Magnaporthe oryzae races
Pb1	Os11g0579200	LOC_Os11g37050	blast	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	Panicle blast 1 (Pb1) is a blast-resistance gene derived from the indica cultivar 'Modan'
Pb1	Os11g0579200	LOC_Os11g37050	blast	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	Pb1-mediated resistance, which is characterized by durability of resistance and adult/panicle blast resistance, has been introduced into elite varieties for commercial cultivation
Pb1	Os11g0579200	LOC_Os11g37050	blast	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	We discuss possible determinants for the durability of Pb1-mediated blast resistance
Pb1	Os11g0579200	LOC_Os11g37050	blast	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Panicle blast 1 (Pb1) is a panicle blast resistance gene derived from the indica rice cultivar Modan
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Here, we investigated the molecular mechanisms underlying Pb1-mediated blast resistance
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Pb1-mediated panicle blast resistance was largely compromised when WRKY45 was knocked down in a Pb1-containing rice cultivar
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Leaf-blast resistance by Pb1 overexpression (Pb1-ox) was also compromised in WRKY45 knockdown/Pb1-ox rice
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Blast infection induced higher accumulation of WRKY45 in Pb1-ox than in control Nipponbare rice
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Overexpression of Pb1-Quad, a coiled-coil domain mutant that had weak interaction with WRKY45, resulted in significantly weaker blast resistance than that of wild-type Pb1
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Overexpression of Pb1 with a nuclear export sequence failed to confer blast resistance to rice
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	These results suggest that the blast resistance of Pb1 depends on its interaction with WRKY45 in the nucleus
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	In a transient system using rice protoplasts, coexpression of Pb1 enhanced WRKY45 accumulation and increased WRKY45-dependent transactivation activity, suggesting that protection of WRKY45 from ubiquitin proteasome system degradation is possibly involved in Pb1-dependent blast resistance
Pb1	Os11g0579200	LOC_Os11g37050	blast	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	Pb1-mediated resistance, which is characterized by durability of resistance and adult/panicle blast resistance, has been introduced into elite varieties for commercial cultivation
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	We discuss possible determinants for the durability of Pb1-mediated blast resistance
Pb1	Os11g0579200	LOC_Os11g37050	resistant	Identification of a RFLP Marker Tightly Linked to the Panicle Blast Resistance Gene, Pb1, in Rice	Based on the cosegregation of the resistant genotypes of Pb1 and Stvb-i, a rice stripe virus (RSV) resistance gene derived from an Indica cultivar Modan, we examined the linkage relationships between Pb1 and 13 Stvb-i-linked RFLP markers located on the long arm of chromosome 11
Pb1	Os11g0579200	LOC_Os11g37050	panicle	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	Panicle blast 1 (Pb1) is a blast-resistance gene derived from the indica cultivar 'Modan'
Pb1	Os11g0579200	LOC_Os11g37050	panicle	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	Pb1-mediated resistance, which is characterized by durability of resistance and adult/panicle blast resistance, has been introduced into elite varieties for commercial cultivation
Pb1	Os11g0579200	LOC_Os11g37050	panicle	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	Pb1 transcript levels increased during the development of Pb1+ cultivars; this expression pattern accounts for their adult/panicle resistance
Pb1	Os11g0579200	LOC_Os11g37050	panicle	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication
Pb1	Os11g0579200	LOC_Os11g37050	transcription factor	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	The Pb1 protein interacted with WRKY45, a transcription factor involved in induced resistance via the salicylic acid signaling pathway that is regulated by the ubiquitin proteasome system
Pb1	Os11g0579200	LOC_Os11g37050	panicle	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Panicle blast 1 (Pb1) is a panicle blast resistance gene derived from the indica rice cultivar Modan
Pb1	Os11g0579200	LOC_Os11g37050	panicle	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Pb1-mediated panicle blast resistance was largely compromised when WRKY45 was knocked down in a Pb1-containing rice cultivar
Pb1	Os11g0579200	LOC_Os11g37050	leaf	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Leaf-blast resistance by Pb1 overexpression (Pb1-ox) was also compromised in WRKY45 knockdown/Pb1-ox rice
Pb1	Os11g0579200	LOC_Os11g37050	panicle	Identification of a RFLP Marker Tightly Linked to the Panicle Blast Resistance Gene, Pb1, in Rice	We precisely mapped the Pb1 locus for the panicle blast resistence of a quantitative nature on rice chromosome 11 using RFLP markers
Pb1	Os11g0579200	LOC_Os11g37050	panicle	Identification of a RFLP Marker Tightly Linked to the Panicle Blast Resistance Gene, Pb1, in Rice	Identification of a RFLP Marker Tightly Linked to the Panicle Blast Resistance Gene, Pb1, in Rice
Pb1	Os11g0579200	LOC_Os11g37050	blast	Identification of a RFLP Marker Tightly Linked to the Panicle Blast Resistance Gene, Pb1, in Rice	We precisely mapped the Pb1 locus for the panicle blast resistence of a quantitative nature on rice chromosome 11 using RFLP markers
Pb1	Os11g0579200	LOC_Os11g37050	blast	Identification of a RFLP Marker Tightly Linked to the Panicle Blast Resistance Gene, Pb1, in Rice	Identification of a RFLP Marker Tightly Linked to the Panicle Blast Resistance Gene, Pb1, in Rice
Pb1	Os11g0579200	LOC_Os11g37050	salicylic acid	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	The Pb1 protein interacted with WRKY45, a transcription factor involved in induced resistance via the salicylic acid signaling pathway that is regulated by the ubiquitin proteasome system
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Identification of a RFLP Marker Tightly Linked to the Panicle Blast Resistance Gene, Pb1, in Rice	Identification of a RFLP Marker Tightly Linked to the Panicle Blast Resistance Gene, Pb1, in Rice
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Panicle blast 1 (Pb1) is a panicle blast resistance gene derived from the indica rice cultivar Modan
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Here, we investigated the molecular mechanisms underlying Pb1-mediated blast resistance
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Pb1-mediated panicle blast resistance was largely compromised when WRKY45 was knocked down in a Pb1-containing rice cultivar
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Leaf-blast resistance by Pb1 overexpression (Pb1-ox) was also compromised in WRKY45 knockdown/Pb1-ox rice
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Overexpression of Pb1-Quad, a coiled-coil domain mutant that had weak interaction with WRKY45, resulted in significantly weaker blast resistance than that of wild-type Pb1
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Overexpression of Pb1 with a nuclear export sequence failed to confer blast resistance to rice
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	These results suggest that the blast resistance of Pb1 depends on its interaction with WRKY45 in the nucleus
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	In a transient system using rice protoplasts, coexpression of Pb1 enhanced WRKY45 accumulation and increased WRKY45-dependent transactivation activity, suggesting that protection of WRKY45 from ubiquitin proteasome system degradation is possibly involved in Pb1-dependent blast resistance
Pb1	Os11g0579200	LOC_Os11g37050	blast resistance	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction
Pb1	Os11g0579200	LOC_Os11g37050	resistance	Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome.	Pb1 is classified as a quantitative resistance gene and it does not have fungal specificity
Pb1	Os11g0579200	LOC_Os11g37050	resistance	Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome.	Mapping of QTL related to Chr7 confirmed the existence of factors that were required for the resistance of Pb1 in the 22 to 23 Mbp region of the rice genome
Pb1	Os11g0579200	LOC_Os11g37050	resistance	Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome.	We clarified how the K209 cultivar is vulnerable to the blast disease despite possessing Pb1 and found the DNA marker responsible for the quantitative resistance of Pb1
Pb1	Os11g0579200	LOC_Os11g37050	disease	Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome.	We clarified how the K209 cultivar is vulnerable to the blast disease despite possessing Pb1 and found the DNA marker responsible for the quantitative resistance of Pb1
Pb1	Os11g0579200	LOC_Os11g37050	blast	Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome.	We found that the expression of WRKY45 gene downstream of Pb1 was weakly induced by rice blast inoculation at the full heading stage in K209
Pb1	Os11g0579200	LOC_Os11g37050	blast	Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome.	We clarified how the K209 cultivar is vulnerable to the blast disease despite possessing Pb1 and found the DNA marker responsible for the quantitative resistance of Pb1
Pb1	Os11g0579200	LOC_Os11g37050	blast disease	Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome.	We clarified how the K209 cultivar is vulnerable to the blast disease despite possessing Pb1 and found the DNA marker responsible for the quantitative resistance of Pb1
Pb2	None	None	leaf	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 Compared with wild type plants, the transgenic rice of Pb2 showed enhanced resistance to panicle and leaf blast with reduced lesion number
Pb2	None	None	leaf	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 Subcellular localization of Pb2 showed that it is located on plasma membrane, and GUS tissue-staining observation found that Pb2 is highly expressed in grains, leaf tips and stem nodes
Pb2	None	None	stem	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 Subcellular localization of Pb2 showed that it is located on plasma membrane, and GUS tissue-staining observation found that Pb2 is highly expressed in grains, leaf tips and stem nodes
Pb2	None	None	resistance	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 Compared with wild type plants, the transgenic rice of Pb2 showed enhanced resistance to panicle and leaf blast with reduced lesion number
Pb2	None	None	resistance	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 It indicated that Pb2 could be useful for breeding of rice blast resistance
Pb2	None	None	panicle	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 Compared with wild type plants, the transgenic rice of Pb2 showed enhanced resistance to panicle and leaf blast with reduced lesion number
Pb2	None	None	blast	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 By haplotype and expression analysis, one of the Nucleotide-binding domain and Leucine-rich Repeat (NLR) Pb2 genes was highly conserved in multiple resistant rice cultivars, and its expression was significantly upregulated after rice blast infection
Pb2	None	None	blast	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 Compared with wild type plants, the transgenic rice of Pb2 showed enhanced resistance to panicle and leaf blast with reduced lesion number
Pb2	None	None	blast	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 It indicated that Pb2 could be useful for breeding of rice blast resistance
Pb2	None	None	R protein	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 Pb2 encodes a typical NBS-LRR protein with NB-ARC domain and LRR domain
Pb2	None	None	breeding	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 It indicated that Pb2 could be useful for breeding of rice blast resistance
Pb2	None	None	blast resistance	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 It indicated that Pb2 could be useful for breeding of rice blast resistance
Pb2	None	None	plasma membrane	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 Subcellular localization of Pb2 showed that it is located on plasma membrane, and GUS tissue-staining observation found that Pb2 is highly expressed in grains, leaf tips and stem nodes
Pb2	None	None	resistant	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 By haplotype and expression analysis, one of the Nucleotide-binding domain and Leucine-rich Repeat (NLR) Pb2 genes was highly conserved in multiple resistant rice cultivars, and its expression was significantly upregulated after rice blast infection
Pb2	None	None	lesion	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, Pb2, Encoding NLR Protein.	 Compared with wild type plants, the transgenic rice of Pb2 showed enhanced resistance to panicle and leaf blast with reduced lesion number
PBI1	Os01g0156300	LOC_Os01g06340	transcription factor	Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.	Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.
PBI1	Os01g0156300	LOC_Os01g06340	Kinase	Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.	 In addition, chitin-induced MAP kinase activation is required for WRKY45 activation and PBI1 degradation
PBI1	Os01g0156300	LOC_Os01g06340	kinase	Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.	 In addition, chitin-induced MAP kinase activation is required for WRKY45 activation and PBI1 degradation
PBI1	Os01g0156300	LOC_Os01g06340	transcriptional activator	Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.	 PBI1 also interacts with WRKY45, a master transcriptional activator of rice immunity, and negatively regulates its activity
PBI1	Os01g0156300	LOC_Os01g06340	chitin signaling	Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.	 These data suggest that PBI1 suppresses WRKY45 activity when cells are in an unelicited state, and during chitin signaling, PUB44-mediated degradation of PBI1 leads to activation of WRKY45
PBI1	Os01g0156300	LOC_Os01g06340	immunity	Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity	Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity
PCF1	Os04g0194600	LOC_Os04g11830	meristem	PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene	Our results suggest that PCF1 and PCF2 are involved in meristematic tissue-specific expression of the rice PCNA gene through binding to sites IIa and IIb and formation of homodimers or heterodimers
PCF2|OsPCF2	Os08g0544800	LOC_Os08g43160	meristem	PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene	A supershift assay using an anti-PCF2 antibody showed the involvement of PCF2 in site IIa (site IIb) binding activities in rice nuclear extracts, particularly in meristematic tissues
PCF2|OsPCF2	Os08g0544800	LOC_Os08g43160	meristem	PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene	Our results suggest that PCF1 and PCF2 are involved in meristematic tissue-specific expression of the rice PCNA gene through binding to sites IIa and IIb and formation of homodimers or heterodimers
PDD|TCD8	Os08g0407000	LOC_Os08g31460	chloroplast	A Natural Variation in PLEIOTROPIC DEVELOPMENTAL DEFECTS Uncovers a Crucial Role for Chloroplast tRNA Modification in Translation and Plant Development.	 LC-MS/MS revealed that PDD is associated with the 5-methylaminomethyl-2-thiouridine modification of chloroplast tRNA
PDD|TCD8	Os08g0407000	LOC_Os08g31460	map-based cloning	A Natural Variation in PLEIOTROPIC DEVELOPMENTAL DEFECTS Uncovers a Crucial Role for Chloroplast tRNA Modification in Translation and Plant Development.	 Map-based cloning revealed that PDD encodes an evolutionarily conserved tRNA-modifying GTPase belonging to the TrmE family
PDD|TCD8	Os08g0407000	LOC_Os08g31460	leaf	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.
PDD|TCD8	Os08g0407000	LOC_Os08g31460	chloroplast	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.
PDD|TCD8	Os08g0407000	LOC_Os08g31460	chloroplast	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	 In addition, the disturbance of TCD8 suppressed the transcripts of certain chloroplast-related genes at low temperature, although the genes were recoverable to nearly normal levels at high temperature (32 °C), indicating that TCD8 governs chloroplast development at low temperature
PDD|TCD8	Os08g0407000	LOC_Os08g31460	temperature	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	 In addition, the disturbance of TCD8 suppressed the transcripts of certain chloroplast-related genes at low temperature, although the genes were recoverable to nearly normal levels at high temperature (32 °C), indicating that TCD8 governs chloroplast development at low temperature
PDD|TCD8	Os08g0407000	LOC_Os08g31460	development	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.
PDD|TCD8	Os08g0407000	LOC_Os08g31460	development	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	 In addition, the disturbance of TCD8 suppressed the transcripts of certain chloroplast-related genes at low temperature, although the genes were recoverable to nearly normal levels at high temperature (32 °C), indicating that TCD8 governs chloroplast development at low temperature
PDD|TCD8	Os08g0407000	LOC_Os08g31460	map-based cloning	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	 Map-based cloning and complementary test revealed the TCD8 encoded a multi-domain GTPase localized in chloroplasts
PDD|TCD8	Os08g0407000	LOC_Os08g31460	chloroplast development	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.
PDD|TCD8	Os08g0407000	LOC_Os08g31460	chloroplast development	Rice TCD8 Encoding a Multi-Domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	 In addition, the disturbance of TCD8 suppressed the transcripts of certain chloroplast-related genes at low temperature, although the genes were recoverable to nearly normal levels at high temperature (32 °C), indicating that TCD8 governs chloroplast development at low temperature
PDIL2;3	Os09g0451500	LOC_Os09g27830	reticulum stress response	Cis-element of the rice PDIL2-3 promoter is responsible for inducing the endoplasmic reticulum stress response.	Cis-element of the rice PDIL2-3 promoter is responsible for inducing the endoplasmic reticulum stress response.
PDIL2;3	Os09g0451500	LOC_Os09g27830	stress response	Cis-element of the rice PDIL2-3 promoter is responsible for inducing the endoplasmic reticulum stress response.	Cis-element of the rice PDIL2-3 promoter is responsible for inducing the endoplasmic reticulum stress response.
PDIL2;3	Os09g0451500	LOC_Os09g27830	ER stress	Cis-element of the rice PDIL2-3 promoter is responsible for inducing the endoplasmic reticulum stress response.	The activation of PDIL2-3 in response to ER stress strongly depends on the IRE1-OsbZIP50 signaling pathway.
PDK1	Os01g0872800	LOC_Os01g65230	magnaporthe oryzae	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	The overexpression of OsPdk1 enhanced basal resistance against a blast fungus, Magnaporthe oryzae, and a bacterial pathogen, Xanthomonas oryzae pv
PDK1	Os01g0872800	LOC_Os01g65230	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	We show here that OsPdk1 acts upstream of the OsOxi1-OsPti1a signal cascade in disease resistance in rice
PDK1	Os01g0872800	LOC_Os01g65230	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Taken together, these results suggest that OsPdk1 positively regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice
PDK1	Os01g0872800	LOC_Os01g65230	disease resistance	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice
PDK1	Os01g0872800	LOC_Os01g65230	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	We show here that OsPdk1 acts upstream of the OsOxi1-OsPti1a signal cascade in disease resistance in rice
PDK1	Os01g0872800	LOC_Os01g65230	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Taken together, these results suggest that OsPdk1 positively regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice
PDK1	Os01g0872800	LOC_Os01g65230	disease	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice
PDK1	Os01g0872800	LOC_Os01g65230	blast	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	The overexpression of OsPdk1 enhanced basal resistance against a blast fungus, Magnaporthe oryzae, and a bacterial pathogen, Xanthomonas oryzae pv
PDK1	Os01g0872800	LOC_Os01g65230	abiotic stress	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	In Arabidopsis, AtPdk1 directly interacts with phosphatidic acid, which functions as a second messenger in both biotic and abiotic stress responses
PDK1	Os01g0872800	LOC_Os01g65230	biotic stress	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1-OsPti1a Phosphorylation Cascade in Rice	In Arabidopsis, AtPdk1 directly interacts with phosphatidic acid, which functions as a second messenger in both biotic and abiotic stress responses
pds1	Os08g0155800	LOC_Os08g05950	development	The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets.	Further isolation of pds1 and its interactor pds2, would provide new insight into the molecular regulation of grass inflorescence development and exsertion, and the evolution history of the extant rice
pds1	Os08g0155800	LOC_Os08g05950	panicle	The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets.	The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets.
pds1	Os08g0155800	LOC_Os08g05950	inflorescence	The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets.	Further isolation of pds1 and its interactor pds2, would provide new insight into the molecular regulation of grass inflorescence development and exsertion, and the evolution history of the extant rice
pds1	Os08g0155800	LOC_Os08g05950	inflorescence development	The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets.	Further isolation of pds1 and its interactor pds2, would provide new insight into the molecular regulation of grass inflorescence development and exsertion, and the evolution history of the extant rice
PEZ1	Os03g0571900	LOC_Os03g37490	iron	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele	In the roots of pez1, precipitated apoplasmic iron increased
PEZ1	Os03g0571900	LOC_Os03g37490	iron	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele	The growth of PEZ1 overexpression lines was severely restricted, and these lines accumulated more iron as a result of the high solubilization of precipitated apoplasmic iron in the stele
PEZ1	Os03g0571900	LOC_Os03g37490	iron	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele	We show that PEZ1 is responsible for an increase of PCA concentration in the xylem sap and is essential for the utilization of apoplasmic precipitated iron in the stele
PEZ1	Os03g0571900	LOC_Os03g37490	transporter	The role of rice phenolics efflux transporter in solubilizing apoplasmic iron	Recently, we isolated and characterized a phenolics efflux transporter in rice by characterizing a mutant in which the amount of PCA and CA in the xylem sap was dramatically reduced, which we hence named phenolics efflux zero 1 (pez1)
PEZ1	Os03g0571900	LOC_Os03g37490	growth	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele	The growth of PEZ1 overexpression lines was severely restricted, and these lines accumulated more iron as a result of the high solubilization of precipitated apoplasmic iron in the stele
PEZ1	Os03g0571900	LOC_Os03g37490	cadmium	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele	We identified a cadmium-accumulating rice mutant in which the amount of PCA and caffeic acid in the xylem sap was dramatically reduced and hence named it phenolics efflux zero 1 (pez1)
PEZ1	Os03g0571900	LOC_Os03g37490	xylem	The role of rice phenolics efflux transporter in solubilizing apoplasmic iron	Recently, we isolated and characterized a phenolics efflux transporter in rice by characterizing a mutant in which the amount of PCA and CA in the xylem sap was dramatically reduced, which we hence named phenolics efflux zero 1 (pez1)
PEZ1	Os03g0571900	LOC_Os03g37490	xylem	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele	We identified a cadmium-accumulating rice mutant in which the amount of PCA and caffeic acid in the xylem sap was dramatically reduced and hence named it phenolics efflux zero 1 (pez1)
PEZ1	Os03g0571900	LOC_Os03g37490	xylem	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele	We show that PEZ1 is responsible for an increase of PCA concentration in the xylem sap and is essential for the utilization of apoplasmic precipitated iron in the stele
PEZ1	Os03g0571900	LOC_Os03g37490	root	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele	PEZ1 localized mainly in the stele of roots
PEZ1	Os03g0571900	LOC_Os03g37490	root	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele	In the roots of pez1, precipitated apoplasmic iron increased
PF1	Os09g0402100	LOC_Os09g23730	transcription factor	PF1: an A-T hook-containing DNA binding protein from rice that interacts with a functionally defined d(AT)-rich element in the oat phytochrome A3 gene promoter	Because this is the behavior expected of positive factor 1 (PF1), the presumptive nuclear transcription factor that acts in trans at the PE1 element in vivo, the data support the conclusion that the protein encoded by pR4 is in fact rice PF1
PFKB1	Os10g0573000	LOC_Os10g42240	chloroplast	A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.	Here, we report the involvement of a PCK protein PFKB1 in chloroplast development by identification of a new rice mutant, revertible early yellowing Kitaake 2 [rey(k2)]
PFKB1	Os10g0573000	LOC_Os10g42240	chloroplast	A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.	The Pfkb1 gene is ubiquitously expressed, and its protein is mainly targeted to the chloroplast and, in some cells, to the nucleus
PFKB1	Os10g0573000	LOC_Os10g42240	chloroplast	A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.	Taken together, our study suggests that PFKB1 functions as a novel regulator indispensable for early chloroplast development, at least partly by regulating chloroplast-associated genes
PFKB1	Os10g0573000	LOC_Os10g42240	development	A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.	Here, we report the involvement of a PCK protein PFKB1 in chloroplast development by identification of a new rice mutant, revertible early yellowing Kitaake 2 [rey(k2)]
PFKB1	Os10g0573000	LOC_Os10g42240	nucleus	A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.	The Pfkb1 gene is ubiquitously expressed, and its protein is mainly targeted to the chloroplast and, in some cells, to the nucleus
PFKB1	Os10g0573000	LOC_Os10g42240	chloroplast development	A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.	Here, we report the involvement of a PCK protein PFKB1 in chloroplast development by identification of a new rice mutant, revertible early yellowing Kitaake 2 [rey(k2)]
PFKB1	Os10g0573000	LOC_Os10g42240	chloroplast development	A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.	Taken together, our study suggests that PFKB1 functions as a novel regulator indispensable for early chloroplast development, at least partly by regulating chloroplast-associated genes
PFP1	Os06g0247500	LOC_Os06g13810	starch	Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development viaheterotetramer formation in rice (Oryza sativa L.).	However, mechanisms underlying the regulation of starch metabolism by PFP1 remain elusive
PFP1	Os06g0247500	LOC_Os06g13810	map-based cloning	Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development viaheterotetramer formation in rice (Oryza sativa L.).	Map-based cloning revealed that pfp1-3 is a novel allele and encodes the regulatory β-subunit of PFP1 (PFP1β)
PFP1	Os06g0247500	LOC_Os06g13810	endosperm	Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development viaheterotetramer formation in rice (Oryza sativa L.).	This study addressed the function of PFP1 in rice floury endosperm and defective grainfilling
PFP1	Os06g0247500	LOC_Os06g13810	endosperm	Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development viaheterotetramer formation in rice (Oryza sativa L.).	Concentrations of multiple lipid and glycolytic intermediates and trehalose metabolites were elevated in pfp1-3 endosperm, indicating that PFP1 modulates endosperm metabolism, potentially through reversible adjustments to metabolic fluxes
PGL1	Os03g0171300	LOC_Os03g07510	lemma	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	Overexpression of an atypical bHLH, named POSITIVE REGULATOR OF GRAIN LENGTH 1 (PGL1), in lemma/palea increased grain length and weight in transgenic rice
PGL1	Os03g0171300	LOC_Os03g07510	palea	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	Overexpression of an atypical bHLH, named POSITIVE REGULATOR OF GRAIN LENGTH 1 (PGL1), in lemma/palea increased grain length and weight in transgenic rice
PGL1	Os03g0171300	LOC_Os03g07510	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Previously, we have shown that an antagonistic pair of basic helix-loop-helix (bHLH) proteins, POSITIVE REGULATOR OF GRAIN LENGTH 1 (PGL1) and ANTAGONIST OF PGL1 (APG), is involved in controlling rice grain length
PGL1	Os03g0171300	LOC_Os03g07510	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	These findings suggest that PGL2 and PGL1 redundantly suppress the function of APG by forming heterodimers to positively regulate the rice grain length, while the pathway through which BU1, the closest homolog of PGL2, controls grain length is independent of APG
PGL1	Os03g0171300	LOC_Os03g07510	grain length	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	Overexpression of an atypical bHLH, named POSITIVE REGULATOR OF GRAIN LENGTH 1 (PGL1), in lemma/palea increased grain length and weight in transgenic rice
PGL1	Os03g0171300	LOC_Os03g07510	grain length	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	PGL1-APG represents a new grain length and weight-controlling pathway in which APG is a negative regulator whose function is inhibited by PGL1
PGL1	Os03g0171300	LOC_Os03g07510	grain	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	Overexpression of an atypical bHLH, named POSITIVE REGULATOR OF GRAIN LENGTH 1 (PGL1), in lemma/palea increased grain length and weight in transgenic rice
PGL1	Os03g0171300	LOC_Os03g07510	grain	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	Transcription of two known grain-length-related genes, GS3 and SRS3, was largely unaffected in the PGL1-overexpressing and APG-silenced plants
PGL1	Os03g0171300	LOC_Os03g07510	grain	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	PGL1-APG represents a new grain length and weight-controlling pathway in which APG is a negative regulator whose function is inhibited by PGL1
PGL1	Os03g0171300	LOC_Os03g07510	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Previously, we have shown that an antagonistic pair of basic helix-loop-helix (bHLH) proteins, POSITIVE REGULATOR OF GRAIN LENGTH 1 (PGL1) and ANTAGONIST OF PGL1 (APG), is involved in controlling rice grain length
PGL1	Os03g0171300	LOC_Os03g07510	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	These findings suggest that PGL2 and PGL1 redundantly suppress the function of APG by forming heterodimers to positively regulate the rice grain length, while the pathway through which BU1, the closest homolog of PGL2, controls grain length is independent of APG
PGL12	None	LOC_Os12g10184	chloroplast	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	We also showed that the transcript levels of several nuclear- and plastid-encoded genes associated with chloroplast development and photosynthesis were significantly altered in pgl12 mutants
PGL12	None	LOC_Os12g10184	chloroplast	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	Our results indicate that PGL12 is a new PLS-type PPR protein required for proper chloroplast development and 16S rRNA processing in rice
PGL12	None	LOC_Os12g10184	temperature	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	The pgl12 mutant had significantly reduced chlorophyll contents and increased sensitivity to changes in temperature
PGL12	None	LOC_Os12g10184	seedling	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	In this study, we identified and characterized a rice mutant, pale-green leaf12 (pgl12); at the seedling stage, pgl12 mutants had yellow-green leaves, which gradually turned pale green as the plants grew
PGL12	None	LOC_Os12g10184	development	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	We also showed that the transcript levels of several nuclear- and plastid-encoded genes associated with chloroplast development and photosynthesis were significantly altered in pgl12 mutants
PGL12	None	LOC_Os12g10184	development	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	Our results indicate that PGL12 is a new PLS-type PPR protein required for proper chloroplast development and 16S rRNA processing in rice
PGL12	None	LOC_Os12g10184	map-based cloning	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	Map-based cloning of PGL12, including a transgenic complementation test, confirmed the presence of a base substitution (C to T), generating a stop codon, within LOC_Os12g10184 in the pgl12 mutant
PGL12	None	LOC_Os12g10184	photosynthesis	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	We also showed that the transcript levels of several nuclear- and plastid-encoded genes associated with chloroplast development and photosynthesis were significantly altered in pgl12 mutants
PGL12	None	LOC_Os12g10184	R protein	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	Our results indicate that PGL12 is a new PLS-type PPR protein required for proper chloroplast development and 16S rRNA processing in rice
PGL12	None	LOC_Os12g10184	chloroplast development	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	We also showed that the transcript levels of several nuclear- and plastid-encoded genes associated with chloroplast development and photosynthesis were significantly altered in pgl12 mutants
PGL12	None	LOC_Os12g10184	chloroplast development	PALE-GREEN LEAF12 Encodes A Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA processing in Rice.	Our results indicate that PGL12 is a new PLS-type PPR protein required for proper chloroplast development and 16S rRNA processing in rice
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Here, we report the involvement of another atypical bHLH protein gene, POSITIVE REGULATOR OF GRAIN LENGTH 2 (PGL2), in the regulation of rice grain length
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Over-expression of PGL2 in the lemma/palea increased grain length and weight in correlation with the level of transgene expression
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	PGL2 interacts with a typical bHLH protein APG, a negative regulator of rice grain length and weight, in vitro and in vivo
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	It was reported that overexpression of BU1 (BRASSINOSTEROID UPREGULATED 1), the closest homolog of PGL2, caused an increase in grain length
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain length	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	These findings suggest that PGL2 and PGL1 redundantly suppress the function of APG by forming heterodimers to positively regulate the rice grain length, while the pathway through which BU1, the closest homolog of PGL2, controls grain length is independent of APG
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	palea	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Over-expression of PGL2 in the lemma/palea increased grain length and weight in correlation with the level of transgene expression
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain size	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Observation of the inner epidermal cells of lemma of PGL2-overexpressing lines revealed that the long grain size is caused by an increase in cell length
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	brassinosteroid	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	It was reported that overexpression of BU1 (BRASSINOSTEROID UPREGULATED 1), the closest homolog of PGL2, caused an increase in grain length
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Here, we report the involvement of another atypical bHLH protein gene, POSITIVE REGULATOR OF GRAIN LENGTH 2 (PGL2), in the regulation of rice grain length
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Over-expression of PGL2 in the lemma/palea increased grain length and weight in correlation with the level of transgene expression
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Observation of the inner epidermal cells of lemma of PGL2-overexpressing lines revealed that the long grain size is caused by an increase in cell length
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	PGL2 interacts with a typical bHLH protein APG, a negative regulator of rice grain length and weight, in vitro and in vivo
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	It was reported that overexpression of BU1 (BRASSINOSTEROID UPREGULATED 1), the closest homolog of PGL2, caused an increase in grain length
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	These findings suggest that PGL2 and PGL1 redundantly suppress the function of APG by forming heterodimers to positively regulate the rice grain length, while the pathway through which BU1, the closest homolog of PGL2, controls grain length is independent of APG
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	lemma	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Over-expression of PGL2 in the lemma/palea increased grain length and weight in correlation with the level of transgene expression
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	lemma	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Observation of the inner epidermal cells of lemma of PGL2-overexpressing lines revealed that the long grain size is caused by an increase in cell length
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	leaf	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	leaf	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	OsBUL1 knockout mutant (osbul1) and transgenic rice for double stranded RNA interference (dsRNAi) of OsBUL1 produced erected leaves with smaller grains whereas OsBUL1 overexpressors and an activation tagging line of OsBUL1 exhibited increased laminar inclination and grain size
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	To understand the molecular network of OsBUL1 function in rice, we isolated a novel OsBUL1-interacting protein, LO9-177, an uncharacterized protein containing a KxDL motif and functionally studied it with respect to the laminar inclination and grain size of rice
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain size	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain size	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	OsBUL1 knockout mutant (osbul1) and transgenic rice for double stranded RNA interference (dsRNAi) of OsBUL1 produced erected leaves with smaller grains whereas OsBUL1 overexpressors and an activation tagging line of OsBUL1 exhibited increased laminar inclination and grain size
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain size	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	To understand the molecular network of OsBUL1 function in rice, we isolated a novel OsBUL1-interacting protein, LO9-177, an uncharacterized protein containing a KxDL motif and functionally studied it with respect to the laminar inclination and grain size of rice
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	grain size	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	cell elongation	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	OsBUL1 COMPLEX1 (OsBC1) is a basic HLH (bHLH) transcriptional activator that interacts with OsBUL1 only in the presence of LO9-177 forming a possible trimeric complex for cell elongation in the laminar joint of rice
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	height	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	plant height	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Transgenic rice plants expressing OsBC1 under the control of OsBUL1 promoter showed increased grain size as well as leaf bending while transgenic lines for dsRNAi and/or expressing a dominant repressor form of OsBC1 displayed reduced plant height and grain size
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	transcriptional activator	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	transcriptional activator	Rice leaf angle and grain size are affected by the OsBUL1 transcriptional activator complex	OsBUL1 COMPLEX1 (OsBC1) is a basic HLH (bHLH) transcriptional activator that interacts with OsBUL1 only in the presence of LO9-177 forming a possible trimeric complex for cell elongation in the laminar joint of rice
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	leaf	Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).	Three candidates, OsbHLH153, OsbHLH173 and OsbHLH174, quickly responded to BR and IAA involved in plant architecture except for OsbHLH173, whose expression level was too low to be detected; their overexpression in plants increased rice leaf angle
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	architecture	Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).	Three candidates, OsbHLH153, OsbHLH173 and OsbHLH174, quickly responded to BR and IAA involved in plant architecture except for OsbHLH173, whose expression level was too low to be detected; their overexpression in plants increased rice leaf angle
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	iaa	Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).	Three candidates, OsbHLH153, OsbHLH173 and OsbHLH174, quickly responded to BR and IAA involved in plant architecture except for OsbHLH173, whose expression level was too low to be detected; their overexpression in plants increased rice leaf angle
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	BR	Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).	Three candidates, OsbHLH153, OsbHLH173 and OsbHLH174, quickly responded to BR and IAA involved in plant architecture except for OsbHLH173, whose expression level was too low to be detected; their overexpression in plants increased rice leaf angle
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	IAA	Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).	Three candidates, OsbHLH153, OsbHLH173 and OsbHLH174, quickly responded to BR and IAA involved in plant architecture except for OsbHLH173, whose expression level was too low to be detected; their overexpression in plants increased rice leaf angle
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	plant architecture	Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).	Three candidates, OsbHLH153, OsbHLH173 and OsbHLH174, quickly responded to BR and IAA involved in plant architecture except for OsbHLH173, whose expression level was too low to be detected; their overexpression in plants increased rice leaf angle
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	leaf	OsbHLH98 Regulates Leaf Angle in Rice Through Transcriptional Repression of OsBUL1	OsbHLH98 Regulates Leaf Angle in Rice Through Transcriptional Repression of OsBUL1
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	leaf	OsbHLH98 Regulates Leaf Angle in Rice Through Transcriptional Repression of OsBUL1	Our results demonstrate that OsbHLH98 negatively regulates leaf angle by counteracting brassinosteroid-induced cell elongation via the repression of OsBUL1 transcription
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	cell elongation	OsbHLH98 Regulates Leaf Angle in Rice Through Transcriptional Repression of OsBUL1	Our results demonstrate that OsbHLH98 negatively regulates leaf angle by counteracting brassinosteroid-induced cell elongation via the repression of OsBUL1 transcription
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	leaf angle	OsbHLH98 Regulates Leaf Angle in Rice Through Transcriptional Repression of OsBUL1	OsbHLH98 Regulates Leaf Angle in Rice Through Transcriptional Repression of OsBUL1
PGL2|OsBUL1|OsbHLH173	Os02g0747900	LOC_Os02g51320	leaf angle	OsbHLH98 Regulates Leaf Angle in Rice Through Transcriptional Repression of OsBUL1	Our results demonstrate that OsbHLH98 negatively regulates leaf angle by counteracting brassinosteroid-induced cell elongation via the repression of OsBUL1 transcription
PHD1	Os01g0367100	LOC_Os01g26920	grain	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	PHD1 overexpression increased photosynthetic efficiency, biomass, and grain production, suggesting that PHD1 plays an important role in supplying sufficient galactolipids to thylakoid membranes for proper chloroplast biogenesis and photosynthetic activity
PHD1	Os01g0367100	LOC_Os01g26920	starch	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	Downregulated expression of starch biosynthesis genes and upregulated expression of sucrose cleavage genes might be a result of reduced photosynthetic activity and account for the decreased starch and sucrose levels seen in phd1 leaves
PHD1	Os01g0367100	LOC_Os01g26920	chloroplast	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	Molecular and biochemical analyses revealed that PHD1 encodes a novel chloroplast-localized UDP-glucose epimerase (UGE), which is conserved in the plant kingdom
PHD1	Os01g0367100	LOC_Os01g26920	chloroplast	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	The chloroplast localization of PHD1 was confirmed by immunoblots, immunocytochemistry, and UGE activity in isolated chloroplasts, which was approximately 50% lower in the phd1-1 mutant than in the wild type
PHD1	Os01g0367100	LOC_Os01g26920	chloroplast	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	In addition, the amounts of UDP-glucose and UDP-galactose substrates in chloroplasts were significantly higher and lower, respectively, indicating that PHD1 was responsible for a major part of UGE activity in plastids
PHD1	Os01g0367100	LOC_Os01g26920	chloroplast	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	The relative amount of monogalactosyldiacylglycerol (MGDG), a major chloroplast membrane galactolipid, was decreased in the mutant, while the digalactosyldiacylglycerol (DGDG) amount was not significantly altered, suggesting that PHD1 participates mainly in UDP-galactose supply for MGDG biosynthesis in chloroplasts
PHD1	Os01g0367100	LOC_Os01g26920	chloroplast	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	The phd1 mutant showed decreased chlorophyll content, photosynthetic activity, and altered chloroplast ultrastructure, suggesting that a correct amount of galactoglycerolipids and the ratio of glycolipids versus phospholipids are necessary for proper chloroplast function
PHD1	Os01g0367100	LOC_Os01g26920	chloroplast	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	PHD1 overexpression increased photosynthetic efficiency, biomass, and grain production, suggesting that PHD1 plays an important role in supplying sufficient galactolipids to thylakoid membranes for proper chloroplast biogenesis and photosynthetic activity
PHD1	Os01g0367100	LOC_Os01g26920	yield	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	To gain insight into genes controlling photosynthetic capacity, we selected from our large T-DNA mutant population a rice stunted growth mutant with decreased carbon assimilate and yield production named photoassimilate defective1 (phd1)
PHD1	Os01g0367100	LOC_Os01g26920	biomass	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	PHD1 overexpression increased photosynthetic efficiency, biomass, and grain production, suggesting that PHD1 plays an important role in supplying sufficient galactolipids to thylakoid membranes for proper chloroplast biogenesis and photosynthetic activity
PHD1	Os01g0367100	LOC_Os01g26920	starch biosynthesis	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	Downregulated expression of starch biosynthesis genes and upregulated expression of sucrose cleavage genes might be a result of reduced photosynthetic activity and account for the decreased starch and sucrose levels seen in phd1 leaves
PHD1	Os01g0367100	LOC_Os01g26920	growth	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency	To gain insight into genes controlling photosynthetic capacity, we selected from our large T-DNA mutant population a rice stunted growth mutant with decreased carbon assimilate and yield production named photoassimilate defective1 (phd1)
Pho1	Os03g0758100	LOC_Os03g55090	starch	Mutation of the plastidial alpha-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm	The loss of Pho1 caused smaller starch granules to accumulate and modified the amylopectin structure
Pho1	Os03g0758100	LOC_Os03g55090	starch	Mutation of the plastidial alpha-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm	These results strongly suggest that Pho1 plays a crucial role in starch biosynthesis in rice endosperm at low temperatures and that one or more other factors can complement the function of Pho1 at high temperatures
Pho1	Os03g0758100	LOC_Os03g55090	starch biosynthesis	Mutation of the plastidial alpha-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm	These results strongly suggest that Pho1 plays a crucial role in starch biosynthesis in rice endosperm at low temperatures and that one or more other factors can complement the function of Pho1 at high temperatures
Pho1	Os03g0758100	LOC_Os03g55090	temperature	Mutation of the plastidial alpha-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm	The phenotype of the pho1 mutation was temperature dependent
Pho1	Os03g0758100	LOC_Os03g55090	temperature	Mutation of the plastidial alpha-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm	These results strongly suggest that Pho1 plays a crucial role in starch biosynthesis in rice endosperm at low temperatures and that one or more other factors can complement the function of Pho1 at high temperatures
Pho1	Os03g0758100	LOC_Os03g55090	seed	Mutation of the plastidial alpha-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm	Plastidial phosphorylase (Pho1) accounts for approximately 96% of the total phosphorylase activity in developing rice (Oryza sativa) seeds
Pho1	Os03g0758100	LOC_Os03g55090	seed	Mutation of the plastidial alpha-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm	Variation in the morphological and biochemical phenotype of individual seeds was common to all 15 pho1-independent homozygous mutant lines studied, indicating that this phenotype was caused solely by the genetic defect
Pho1	Os03g0758100	LOC_Os03g55090	endosperm	Mutation of the plastidial alpha-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm	These results strongly suggest that Pho1 plays a crucial role in starch biosynthesis in rice endosperm at low temperatures and that one or more other factors can complement the function of Pho1 at high temperatures
Pho1	Os03g0758100	LOC_Os03g55090	growth	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	Our work suggests that regulation of PHO1 expression via its uORF might be a genetic resource useful-both in natural populations and in the context of genome editing-toward improving plant growth under Pi-deficient conditions
Pho1	Os03g0758100	LOC_Os03g55090	shoot	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	We further show that natural accessions lacking the PHO1 uORF exhibit higher PHO1 protein levels and shoot Pi content
Pho1	Os03g0758100	LOC_Os03g55090	shoot	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	Increased shoot Pi content was linked to the absence of the PHO1 uORF in a population of F2 segregants
Pho1	Os03g0758100	LOC_Os03g55090	homeostasis	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	In this work, we demonstrate that an upstream open reading frame (uORF) present in the 5' untranslated region of the Arabidopsis (Arabidopsis thaliana) PHO1 inhibits its translation and influences Pi homeostasis
Pho1	Os03g0758100	LOC_Os03g55090	plant growth	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	Our work suggests that regulation of PHO1 expression via its uORF might be a genetic resource useful-both in natural populations and in the context of genome editing-toward improving plant growth under Pi-deficient conditions
Pho1	Os03g0758100	LOC_Os03g55090	Pi	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	In this work, we demonstrate that an upstream open reading frame (uORF) present in the 5' untranslated region of the Arabidopsis (Arabidopsis thaliana) PHO1 inhibits its translation and influences Pi homeostasis
Pho1	Os03g0758100	LOC_Os03g55090	Pi	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	A point mutation removing the PHO1 uORF (uORF) in transgenic Arabidopsis resulted in increased association of its mRNA with polysomes and led to higher PHO1 protein levels, independent of Pi availability
Pho1	Os03g0758100	LOC_Os03g55090	Pi	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	We further show that natural accessions lacking the PHO1 uORF exhibit higher PHO1 protein levels and shoot Pi content
Pho1	Os03g0758100	LOC_Os03g55090	Pi	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	Increased shoot Pi content was linked to the absence of the PHO1 uORF in a population of F2 segregants
Pho1	Os03g0758100	LOC_Os03g55090	pi	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	In this work, we demonstrate that an upstream open reading frame (uORF) present in the 5' untranslated region of the Arabidopsis (Arabidopsis thaliana) PHO1 inhibits its translation and influences Pi homeostasis
Pho1	Os03g0758100	LOC_Os03g55090	pi	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	A point mutation removing the PHO1 uORF (uORF) in transgenic Arabidopsis resulted in increased association of its mRNA with polysomes and led to higher PHO1 protein levels, independent of Pi availability
Pho1	Os03g0758100	LOC_Os03g55090	pi	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	We further show that natural accessions lacking the PHO1 uORF exhibit higher PHO1 protein levels and shoot Pi content
Pho1	Os03g0758100	LOC_Os03g55090	pi	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	Increased shoot Pi content was linked to the absence of the PHO1 uORF in a population of F2 segregants
Pho1	Os03g0758100	LOC_Os03g55090	Pi homeostasis	Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame	In this work, we demonstrate that an upstream open reading frame (uORF) present in the 5' untranslated region of the Arabidopsis (Arabidopsis thaliana) PHO1 inhibits its translation and influences Pi homeostasis
phot1a	Os12g0101800	LOC_Os12g01140	seedling	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth
phot1a	Os12g0101800	LOC_Os12g01140	growth	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth	When phot1a mutants were grown under WL (100) and BL (40 miccromol m(-2) s(-1)), they demonstrated a considerable reduction in photosynthetic capacity, which included decreased leaf CO(2) uptake and plant growth
phot1a	Os12g0101800	LOC_Os12g01140	growth	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth	We conclude that the defect of Os Phot1a affects degradation of chlorophylls and carotenoids, and under photosynthetically active photon fluxes, mutation of phot1a results in loss of photosynthetic capacity owing to the damage of photosystems caused by elevated H(2)O(2) accumulation, leading to a reduction in plant growth
phot1a	Os12g0101800	LOC_Os12g01140	growth	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth
phot1a	Os12g0101800	LOC_Os12g01140	leaf	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth	When phot1a mutants were grown under WL (100) and BL (40 miccromol m(-2) s(-1)), they demonstrated a considerable reduction in photosynthetic capacity, which included decreased leaf CO(2) uptake and plant growth
PHS9	Os01g0241400	LOC_Os01g13950	development	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	The corresponding gene PHS9 encodes a higher plant unique CC-type glutaredoxin and is specifically expressed in embryo at the late embryogenesis stage, implying that PHS9 plays some roles in late stage of seed development
PHS9	Os01g0241400	LOC_Os01g13950	seed	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	The corresponding gene PHS9 encodes a higher plant unique CC-type glutaredoxin and is specifically expressed in embryo at the late embryogenesis stage, implying that PHS9 plays some roles in late stage of seed development
PHS9	Os01g0241400	LOC_Os01g13950	seed	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	PHS9 or OsGAP overexpression plants showed reduced, while PHS9 or OsGAP knockout mutant plants showed increased ABA sensitivity in seed germination, suggesting that PHS9 and OsGAP acted as negative regulators in ABA signaling during seed germination
PHS9	Os01g0241400	LOC_Os01g13950	seed	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	Interestingly, the germination of PHS9 and OsGAP overexpression or knockout plant seeds was weakly promoted by H2 O2 , implying that PHS9 and OsGAP could affect the ROS signaling during seed germination
PHS9	Os01g0241400	LOC_Os01g13950	seed germination	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	PHS9 or OsGAP overexpression plants showed reduced, while PHS9 or OsGAP knockout mutant plants showed increased ABA sensitivity in seed germination, suggesting that PHS9 and OsGAP acted as negative regulators in ABA signaling during seed germination
PHS9	Os01g0241400	LOC_Os01g13950	seed germination	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	Interestingly, the germination of PHS9 and OsGAP overexpression or knockout plant seeds was weakly promoted by H2 O2 , implying that PHS9 and OsGAP could affect the ROS signaling during seed germination
PHS9	Os01g0241400	LOC_Os01g13950	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	Yeast two hybrid screening showed that PHS9 could interact with OsGAP, which is an interaction partner of the ABA receptor OsRCAR1
PHS9	Os01g0241400	LOC_Os01g13950	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	PHS9 or OsGAP overexpression plants showed reduced, while PHS9 or OsGAP knockout mutant plants showed increased ABA sensitivity in seed germination, suggesting that PHS9 and OsGAP acted as negative regulators in ABA signaling during seed germination
PHS9	Os01g0241400	LOC_Os01g13950	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	These results indicates that PHS9 plays an important role in the regulation of rice PHS through integration of ROS signaling and ABA signaling
PHS9	Os01g0241400	LOC_Os01g13950	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	Yeast two hybrid screening showed that PHS9 could interact with OsGAP, which is an interaction partner of the ABA receptor OsRCAR1
PHS9	Os01g0241400	LOC_Os01g13950	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	PHS9 or OsGAP overexpression plants showed reduced, while PHS9 or OsGAP knockout mutant plants showed increased ABA sensitivity in seed germination, suggesting that PHS9 and OsGAP acted as negative regulators in ABA signaling during seed germination
PHS9	Os01g0241400	LOC_Os01g13950	ABA	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	These results indicates that PHS9 plays an important role in the regulation of rice PHS through integration of ROS signaling and ABA signaling
PHS9	Os01g0241400	LOC_Os01g13950	seed development	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	The corresponding gene PHS9 encodes a higher plant unique CC-type glutaredoxin and is specifically expressed in embryo at the late embryogenesis stage, implying that PHS9 plays some roles in late stage of seed development
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	sheath	The multiple contributions of phytochromes to the control of internode elongation in rice	ACO1 expression was controlled mainly by phyA and phyB, and a histochemical analysis showed that ACO1 expression was localized to the basal parts of leaf sheaths of phyAphyBphyC seedlings, similar to mature wild-type plants at the heading stage, when internode elongation was greatly promoted
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	flower	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	Rice is a short-day plant, and we found that mutation in either phyB or phyC caused moderate early flowering under the long-day photoperiod, while monogenic phyA mutation had little effect on the flowering time
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	flower	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	The phyA mutation, however, in combination with phyB or phyC mutation caused dramatic early flowering
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	seedling	Isolation and characterization of rice phytochrome A mutants	The seedlings of phyA mutants grown in continuous far-red light showed essentially the same phenotype as dark-grown seedlings, indicating the insensitivity of phyA mutants to far-red light
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	seedling	Isolation and characterization of rice phytochrome A mutants	The etiolated seedlings of phyA mutants also were insensitive to a pulse of far-red light or very low fluence red light
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	seedling	Isolation and characterization of rice phytochrome A mutants	Interestingly, continuous far-red light induced the expression of CAB and RBCS genes in rice phyA seedlings, suggesting the existence of a photoreceptor(s) other than phyA that can perceive continuous far-red light in the etiolated seedlings
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	seedling	Serine-to-alanine substitutions at the amino-terminal region of phytochrome A result in an increase in biological activity	However, hypocotyl elongation experiments revealed that transgenic seedlings expressing S/A phyA showed a higher amplitude of the red light response with respect to the inhibition of hypocotyl elongation
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	ga	The multiple contributions of phytochromes to the control of internode elongation in rice	In addition, the transcription levels of several ethylene- or gibberellin (GA)-related genes were changed in phyAphyBphyC mutants, and measurement of the plant hormone levels indicated low ethylene production and bioactive GA levels in the phyAphyBphyC mutants
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	phosphate	Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves	The metabolite profiles indicated high accumulation of amino acids, organic acids, sugars, sugar phosphates, and nucleotides in the leaf blades of phyA phyB phyC triple mutants, especially in the young leaves, compared with those in the WT
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	flowering time	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	Rice is a short-day plant, and we found that mutation in either phyB or phyC caused moderate early flowering under the long-day photoperiod, while monogenic phyA mutation had little effect on the flowering time
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	ethylene	The multiple contributions of phytochromes to the control of internode elongation in rice	A gene for 1-aminocyclopropane-1-carboxylate oxidase (ACO1), which is an ethylene biosynthesis gene contributing to internode elongation, was up-regulated in phyAphyBphyC seedlings
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	ethylene	The multiple contributions of phytochromes to the control of internode elongation in rice	In addition, the transcription levels of several ethylene- or gibberellin (GA)-related genes were changed in phyAphyBphyC mutants, and measurement of the plant hormone levels indicated low ethylene production and bioactive GA levels in the phyAphyBphyC mutants
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	ethylene	The multiple contributions of phytochromes to the control of internode elongation in rice	We demonstrate that ethylene induced internode elongation and ACO1 expression in phyAphyBphyC seedlings but not in the wild type and that the presence of bioactive GAs was necessary for these effects
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	floral	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Moreover, phyB and phyA can affect Ghd7 activity and Early heading date1 (a floral inducer) activity in the network, respectively
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	heading date	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Moreover, phyB and phyA can affect Ghd7 activity and Early heading date1 (a floral inducer) activity in the network, respectively
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	Although phyAphyBphyC phytochrome-null mutants in rice (Oryza sativa) have morphological changes and exhibit internode elongation, even as seedlings, it is unknown how phytochromes contribute to the control of internode elongation
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	A gene for 1-aminocyclopropane-1-carboxylate oxidase (ACO1), which is an ethylene biosynthesis gene contributing to internode elongation, was up-regulated in phyAphyBphyC seedlings
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	ACO1 expression was controlled mainly by phyA and phyB, and a histochemical analysis showed that ACO1 expression was localized to the basal parts of leaf sheaths of phyAphyBphyC seedlings, similar to mature wild-type plants at the heading stage, when internode elongation was greatly promoted
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	We demonstrate that ethylene induced internode elongation and ACO1 expression in phyAphyBphyC seedlings but not in the wild type and that the presence of bioactive GAs was necessary for these effects
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	gibberellin	The multiple contributions of phytochromes to the control of internode elongation in rice	In addition, the transcription levels of several ethylene- or gibberellin (GA)-related genes were changed in phyAphyBphyC mutants, and measurement of the plant hormone levels indicated low ethylene production and bioactive GA levels in the phyAphyBphyC mutants
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	leaf	The multiple contributions of phytochromes to the control of internode elongation in rice	ACO1 expression was controlled mainly by phyA and phyB, and a histochemical analysis showed that ACO1 expression was localized to the basal parts of leaf sheaths of phyAphyBphyC seedlings, similar to mature wild-type plants at the heading stage, when internode elongation was greatly promoted
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	dwarf	Serine-to-alanine substitutions at the amino-terminal region of phytochrome A result in an increase in biological activity	Transgenic tobacco plants expressing either wild-type or S/A phyA showed similar phenotypic alterations, including dwarfism and dark-green leaves
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	leaf	Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves	Distinct metabolic profiles between phyA phyB phyC triple mutants and the wild type (WT), as well as those between young and mature leaf blades, could be clearly observed by principal component analysis (PCA)
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	leaf	Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves	The metabolite profiles indicated high accumulation of amino acids, organic acids, sugars, sugar phosphates, and nucleotides in the leaf blades of phyA phyB phyC triple mutants, especially in the young leaves, compared with those in the WT
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	flowering time	OsPhyA modulates rice flowering time mainly through OsGI under short days and Ghd7 under long days in the absence of phytochrome B.	OsPhyA modulates rice flowering time mainly through OsGI under short days and Ghd7 under long days in the absence of phytochrome B.
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	flowering time	OsPhyA modulates rice flowering time mainly through OsGI under short days and Ghd7 under long days in the absence of phytochrome B.	These results indicated that OsPhyA influences flowering time mainly by affecting the expression of OsGI under SD and Ghd7 under LD when phytochrome B is absent
PHYA|OsPhyA	Os03g0719800	LOC_Os03g51030	flowering time	OsPhyA modulates rice flowering time mainly through OsGI under short days and Ghd7 under long days in the absence of phytochrome B.	We also demonstrated that far-red light delays flowering time via both OsPhyA and OsPhyB
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	growth	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	To understand the underlying mechanism by which phyB regulates drought tolerance, we analyzed root growth and water loss from the leaves of phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	growth	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	The root system showed no significant difference between the phyB mutants and WT, suggesting that improved drought tolerance has little relation to root growth
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flower	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	Rice is a short-day plant, and we found that mutation in either phyB or phyC caused moderate early flowering under the long-day photoperiod, while monogenic phyA mutation had little effect on the flowering time
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flower	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	The phyA mutation, however, in combination with phyB or phyC mutation caused dramatic early flowering
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	ethylene	The multiple contributions of phytochromes to the control of internode elongation in rice	A gene for 1-aminocyclopropane-1-carboxylate oxidase (ACO1), which is an ethylene biosynthesis gene contributing to internode elongation, was up-regulated in phyAphyBphyC seedlings
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	ethylene	The multiple contributions of phytochromes to the control of internode elongation in rice	In addition, the transcription levels of several ethylene- or gibberellin (GA)-related genes were changed in phyAphyBphyC mutants, and measurement of the plant hormone levels indicated low ethylene production and bioactive GA levels in the phyAphyBphyC mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	ethylene	The multiple contributions of phytochromes to the control of internode elongation in rice	We demonstrate that ethylene induced internode elongation and ACO1 expression in phyAphyBphyC seedlings but not in the wild type and that the presence of bioactive GAs was necessary for these effects
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	heading date	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Moreover, phyB and phyA can affect Ghd7 activity and Early heading date1 (a floral inducer) activity in the network, respectively
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	 ga 	The multiple contributions of phytochromes to the control of internode elongation in rice	In addition, the transcription levels of several ethylene- or gibberellin (GA)-related genes were changed in phyAphyBphyC mutants, and measurement of the plant hormone levels indicated low ethylene production and bioactive GA levels in the phyAphyBphyC mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flower	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	In osphyB mutants, OsCOL4 expression was decreased and osphyB oscol4 double mutants flowered at the same time as the osphyB single mutants, indicating OsCOL4 functions downstream of OsphyB
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flower	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	We also present evidence for two independent pathways through which OsPhyB controls flowering time
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flower	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	Although phyAphyBphyC phytochrome-null mutants in rice (Oryza sativa) have morphological changes and exhibit internode elongation, even as seedlings, it is unknown how phytochromes contribute to the control of internode elongation
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	A gene for 1-aminocyclopropane-1-carboxylate oxidase (ACO1), which is an ethylene biosynthesis gene contributing to internode elongation, was up-regulated in phyAphyBphyC seedlings
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	ACO1 expression was controlled mainly by phyA and phyB, and a histochemical analysis showed that ACO1 expression was localized to the basal parts of leaf sheaths of phyAphyBphyC seedlings, similar to mature wild-type plants at the heading stage, when internode elongation was greatly promoted
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	We demonstrate that ethylene induced internode elongation and ACO1 expression in phyAphyBphyC seedlings but not in the wild type and that the presence of bioactive GAs was necessary for these effects
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	phosphate	Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves	The metabolite profiles indicated high accumulation of amino acids, organic acids, sugars, sugar phosphates, and nucleotides in the leaf blades of phyA phyB phyC triple mutants, especially in the young leaves, compared with those in the WT
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flowering time	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB	We also present evidence for two independent pathways through which OsPhyB controls flowering time
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	floral	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice	Moreover, phyB and phyA can affect Ghd7 activity and Early heading date1 (a floral inducer) activity in the network, respectively
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	We report that phytochrome B (phyB) mutants exhibit improved drought tolerance compared to wild type (WT) rice (Oryza sativa L
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	To understand the underlying mechanism by which phyB regulates drought tolerance, we analyzed root growth and water loss from the leaves of phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	The root system showed no significant difference between the phyB mutants and WT, suggesting that improved drought tolerance has little relation to root growth
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	Considering all these findings, we propose that phyB deficiency causes both reduced total leaf area and reduced transpiration per unit leaf area, which explains the reduced water loss and improved drought tolerance of phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	sheath	The multiple contributions of phytochromes to the control of internode elongation in rice	ACO1 expression was controlled mainly by phyA and phyB, and a histochemical analysis showed that ACO1 expression was localized to the basal parts of leaf sheaths of phyAphyBphyC seedlings, similar to mature wild-type plants at the heading stage, when internode elongation was greatly promoted
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought tolerance	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	We report that phytochrome B (phyB) mutants exhibit improved drought tolerance compared to wild type (WT) rice (Oryza sativa L
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought tolerance	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	To understand the underlying mechanism by which phyB regulates drought tolerance, we analyzed root growth and water loss from the leaves of phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought tolerance	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	The root system showed no significant difference between the phyB mutants and WT, suggesting that improved drought tolerance has little relation to root growth
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought tolerance	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	Considering all these findings, we propose that phyB deficiency causes both reduced total leaf area and reduced transpiration per unit leaf area, which explains the reduced water loss and improved drought tolerance of phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flower	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice	We propose that both positive (OsMADS50 and Ehd1) and negative (Hd1, phyB and Ghd7) regulators of RFT1 form a gene network that regulates LD flowering in rice
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	gibberellin	The multiple contributions of phytochromes to the control of internode elongation in rice	In addition, the transcription levels of several ethylene- or gibberellin (GA)-related genes were changed in phyAphyBphyC mutants, and measurement of the plant hormone levels indicated low ethylene production and bioactive GA levels in the phyAphyBphyC mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	seedling	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	Seedlings of phyB and phyB phyC mutants exhibited a partial loss of sensitivity to continuous red light (Rc) but still showed significant deetiolation responses
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	root	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	To understand the underlying mechanism by which phyB regulates drought tolerance, we analyzed root growth and water loss from the leaves of phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	root	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	The root system showed no significant difference between the phyB mutants and WT, suggesting that improved drought tolerance has little relation to root growth
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	leaf	The multiple contributions of phytochromes to the control of internode elongation in rice	ACO1 expression was controlled mainly by phyA and phyB, and a histochemical analysis showed that ACO1 expression was localized to the basal parts of leaf sheaths of phyAphyBphyC seedlings, similar to mature wild-type plants at the heading stage, when internode elongation was greatly promoted
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flower	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice	Here, we report that phytochrome B (phyB)-mediated suppression of Hd3a is a primary cause of long-day suppression of flowering in rice, based on the three complementary discoveries
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flower	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice	First, overexpression of Hd1 causes a delay in flowering under SD conditions and this effect requires phyB, suggesting that light modulates Hd1 control of Hd3a transcription
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	erect	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	phyB deficiency promoted the expression of both putative ERECTA family genes and EXPANSIN family genes involved in cell expansion in leaves, thus causing greater epidermal cell expansion in the phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	stomata	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	In addition, the developed leaves of phyB mutants displayed larger epidermal cells than WT leaves, resulting in reduced stomatal density
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	stomata	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	Reduced stomatal density resulted in reduced transpiration per unit leaf area in the phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	leaf	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	However, phyB mutants exhibited reduced total leaf area per plant, which was probably due to a reduction in the total number of cells per leaf caused by enhanced expression of Orysa;KRP1 and Orysa;KRP4 (encoding inhibitors of cyclin-dependent kinase complex activity) in the phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	leaf	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	Reduced stomatal density resulted in reduced transpiration per unit leaf area in the phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	leaf	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	Considering all these findings, we propose that phyB deficiency causes both reduced total leaf area and reduced transpiration per unit leaf area, which explains the reduced water loss and improved drought tolerance of phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	stomatal	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	In addition, the developed leaves of phyB mutants displayed larger epidermal cells than WT leaves, resulting in reduced stomatal density
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	stomatal	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice	Reduced stomatal density resulted in reduced transpiration per unit leaf area in the phyB mutants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	heading date	Footprints of natural and artificial selection for photoperiod pathway genes in Oryza	We examined the footprints of natural and artificial selections for four major genes of the photoperiod pathway, namely PHYTOCHROME B (PhyB), HEADING DATE 1 (Hd1), HEADING DATE 3a (Hd3a), and EARLY HEADING DATE 1 (Ehd1), by investigation of the patterns of nucleotide polymorphisms in cultivated and wild rice
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	leaf	Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves	Distinct metabolic profiles between phyA phyB phyC triple mutants and the wild type (WT), as well as those between young and mature leaf blades, could be clearly observed by principal component analysis (PCA)
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	leaf	Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves	The metabolite profiles indicated high accumulation of amino acids, organic acids, sugars, sugar phosphates, and nucleotides in the leaf blades of phyA phyB phyC triple mutants, especially in the young leaves, compared with those in the WT
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	flowering time	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	Rice is a short-day plant, and we found that mutation in either phyB or phyC caused moderate early flowering under the long-day photoperiod, while monogenic phyA mutation had little effect on the flowering time
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	branching	Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.	These results suggest that phyB mediates the regulation of chlorophyll synthesis through transcriptional regulation of these two genes, whose products exert their action at the branching point of the chlorophyll biosynthesis pathway
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	leaf	Rice Phytochrome B (OsPhyB) Negatively Regulates Dark- and Starvation-Induced Leaf Senescence.	The RT-qPCR analysis revealed that several senescence-associated genes, including OsORE1 and OsEIN3, were significantly up-regulated in osphyB-2 mutants, indicating that OsPhyB also inhibits leaf senescence, like Arabidopsis PhyB
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	leaf senescence	Rice Phytochrome B (OsPhyB) Negatively Regulates Dark- and Starvation-Induced Leaf Senescence.	The RT-qPCR analysis revealed that several senescence-associated genes, including OsORE1 and OsEIN3, were significantly up-regulated in osphyB-2 mutants, indicating that OsPhyB also inhibits leaf senescence, like Arabidopsis PhyB
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought	OsPhyB-Mediating Novel Regulatory Pathway for Drought Tolerance in Rice Root Identified by a Global RNA-Seq Transcriptome Analysis of Rice Genes in Response to Water Deficiencies.	 Unlike previous result, we found that OsPhyB represses the activity of ascorbate peroxidase and catalase mediating reactive oxygen species (ROS) processing machinery required for drought tolerance of roots in soil condition, suggesting the potential significance of remaining uncharacterized candidate genes for manipulating drought tolerance in rice
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	tolerance	OsPhyB-Mediating Novel Regulatory Pathway for Drought Tolerance in Rice Root Identified by a Global RNA-Seq Transcriptome Analysis of Rice Genes in Response to Water Deficiencies.	 Unlike previous result, we found that OsPhyB represses the activity of ascorbate peroxidase and catalase mediating reactive oxygen species (ROS) processing machinery required for drought tolerance of roots in soil condition, suggesting the potential significance of remaining uncharacterized candidate genes for manipulating drought tolerance in rice
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	drought tolerance	OsPhyB-Mediating Novel Regulatory Pathway for Drought Tolerance in Rice Root Identified by a Global RNA-Seq Transcriptome Analysis of Rice Genes in Response to Water Deficiencies.	 Unlike previous result, we found that OsPhyB represses the activity of ascorbate peroxidase and catalase mediating reactive oxygen species (ROS) processing machinery required for drought tolerance of roots in soil condition, suggesting the potential significance of remaining uncharacterized candidate genes for manipulating drought tolerance in rice
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	reactive oxygen species	OsPhyB-Mediating Novel Regulatory Pathway for Drought Tolerance in Rice Root Identified by a Global RNA-Seq Transcriptome Analysis of Rice Genes in Response to Water Deficiencies.	 Unlike previous result, we found that OsPhyB represses the activity of ascorbate peroxidase and catalase mediating reactive oxygen species (ROS) processing machinery required for drought tolerance of roots in soil condition, suggesting the potential significance of remaining uncharacterized candidate genes for manipulating drought tolerance in rice
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	heading date	The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice	 OsPRR73 expression was decreased in osphyb mutants, and overexpression of OsPRR73 complemented the early heading date phenotype of osphyb, indicating OsPRR73 works downstream of OsPhyB
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	resistance	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 Here, we found that PhyB mutation or shade treatment promoted rice resistance to ShB, while resistance was reduced by PhyB overexpression
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	resistance	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 Plants overexpressing PIL15 were more susceptible to ShB in contrast to bzr1-D-overexpressing plants compared with the wild-type, suggesting that PhyB may inhibit BZR1 to negatively regulate rice resistance to ShB
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	resistant	Red-light receptor phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	 Further analysis showed that PhyB interacts with phytochrome-interacting factor-like 15 (PIL15), brassinazole resistant 1 (BZR1), and vascular plant one-zinc-finger 2 (VOZ2)
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	resistance	Phytochrome B mediates dim-light-reduced insect resistance by promoting the ethylene pathway in rice.	 The DL-reduced BPH resistance is relieved in osphyB mutants, but aggravated in OsPHYB overexpressing plants
PHYB|OsphyB	Os03g0309200	LOC_Os03g19590	ethylene	Phytochrome B mediates dim-light-reduced insect resistance by promoting the ethylene pathway in rice.	 In addition, we found that nuclear OsphyB stabilizes Ethylene Insensitive Like2 (OsEIL2) by competitively interacting with EIN3 Binding F-Box Protein (OsEBF1) to enhance ET signaling in rice, which contrasts with previous findings that phyB blocks ET signaling by facilitating Ethylene Insensitive3 (EIN3) degradation in other plant species
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	flower	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	Rice is a short-day plant, and we found that mutation in either phyB or phyC caused moderate early flowering under the long-day photoperiod, while monogenic phyA mutation had little effect on the flowering time
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	flower	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	The phyA mutation, however, in combination with phyB or phyC mutation caused dramatic early flowering
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	flowering time	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	Rice is a short-day plant, and we found that mutation in either phyB or phyC caused moderate early flowering under the long-day photoperiod, while monogenic phyA mutation had little effect on the flowering time
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	sheath	The multiple contributions of phytochromes to the control of internode elongation in rice	ACO1 expression was controlled mainly by phyA and phyB, and a histochemical analysis showed that ACO1 expression was localized to the basal parts of leaf sheaths of phyAphyBphyC seedlings, similar to mature wild-type plants at the heading stage, when internode elongation was greatly promoted
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	seedling	Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice	Seedlings of phyB and phyB phyC mutants exhibited a partial loss of sensitivity to continuous red light (Rc) but still showed significant deetiolation responses
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	 ga 	The multiple contributions of phytochromes to the control of internode elongation in rice	In addition, the transcription levels of several ethylene- or gibberellin (GA)-related genes were changed in phyAphyBphyC mutants, and measurement of the plant hormone levels indicated low ethylene production and bioactive GA levels in the phyAphyBphyC mutants
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	leaf	Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves	Distinct metabolic profiles between phyA phyB phyC triple mutants and the wild type (WT), as well as those between young and mature leaf blades, could be clearly observed by principal component analysis (PCA)
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	leaf	Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves	The metabolite profiles indicated high accumulation of amino acids, organic acids, sugars, sugar phosphates, and nucleotides in the leaf blades of phyA phyB phyC triple mutants, especially in the young leaves, compared with those in the WT
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	gibberellin	The multiple contributions of phytochromes to the control of internode elongation in rice	In addition, the transcription levels of several ethylene- or gibberellin (GA)-related genes were changed in phyAphyBphyC mutants, and measurement of the plant hormone levels indicated low ethylene production and bioactive GA levels in the phyAphyBphyC mutants
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	leaf	The multiple contributions of phytochromes to the control of internode elongation in rice	ACO1 expression was controlled mainly by phyA and phyB, and a histochemical analysis showed that ACO1 expression was localized to the basal parts of leaf sheaths of phyAphyBphyC seedlings, similar to mature wild-type plants at the heading stage, when internode elongation was greatly promoted
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	Although phyAphyBphyC phytochrome-null mutants in rice (Oryza sativa) have morphological changes and exhibit internode elongation, even as seedlings, it is unknown how phytochromes contribute to the control of internode elongation
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	A gene for 1-aminocyclopropane-1-carboxylate oxidase (ACO1), which is an ethylene biosynthesis gene contributing to internode elongation, was up-regulated in phyAphyBphyC seedlings
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	ACO1 expression was controlled mainly by phyA and phyB, and a histochemical analysis showed that ACO1 expression was localized to the basal parts of leaf sheaths of phyAphyBphyC seedlings, similar to mature wild-type plants at the heading stage, when internode elongation was greatly promoted
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	seedling	The multiple contributions of phytochromes to the control of internode elongation in rice	We demonstrate that ethylene induced internode elongation and ACO1 expression in phyAphyBphyC seedlings but not in the wild type and that the presence of bioactive GAs was necessary for these effects
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	phosphate	Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves	The metabolite profiles indicated high accumulation of amino acids, organic acids, sugars, sugar phosphates, and nucleotides in the leaf blades of phyA phyB phyC triple mutants, especially in the young leaves, compared with those in the WT
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	ethylene	The multiple contributions of phytochromes to the control of internode elongation in rice	A gene for 1-aminocyclopropane-1-carboxylate oxidase (ACO1), which is an ethylene biosynthesis gene contributing to internode elongation, was up-regulated in phyAphyBphyC seedlings
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	ethylene	The multiple contributions of phytochromes to the control of internode elongation in rice	In addition, the transcription levels of several ethylene- or gibberellin (GA)-related genes were changed in phyAphyBphyC mutants, and measurement of the plant hormone levels indicated low ethylene production and bioactive GA levels in the phyAphyBphyC mutants
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	ethylene	The multiple contributions of phytochromes to the control of internode elongation in rice	We demonstrate that ethylene induced internode elongation and ACO1 expression in phyAphyBphyC seedlings but not in the wild type and that the presence of bioactive GAs was necessary for these effects
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	map-based cloning	A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.	 RESULTS: A rice mutant, late heading date 3 (lhd3), was characterized, and the gene LHD3 was identified with a map-based cloning strategy
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	heading date	A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.	 RESULTS: A rice mutant, late heading date 3 (lhd3), was characterized, and the gene LHD3 was identified with a map-based cloning strategy
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	flowering time	A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.	 Compared with wild-type plants, the lhd3 mutant exhibited delayed flowering under both LD (long-day) and SD (short-day) conditions, and delayed flowering time was positively associated with the day length via the Ehd1 pathway
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	chlorophyll	A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.	 In addition, lhd3 showed a pale-green-leaf phenotype and a slower chlorophyll synthesis rate during the greening process
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	chlorophyll	A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.	 The transcription patterns of many key genes involved in photoperiod-mediated flowering and chlorophyll synthesis were altered in lhd3
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	flowering	A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.	 Compared with wild-type plants, the lhd3 mutant exhibited delayed flowering under both LD (long-day) and SD (short-day) conditions, and delayed flowering time was positively associated with the day length via the Ehd1 pathway
PHYC|OsphyC|LHD3	Os03g0752100	LOC_Os03g54084	flowering	A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.	 The transcription patterns of many key genes involved in photoperiod-mediated flowering and chlorophyll synthesis were altered in lhd3
Pi1-5	None	None	blast resistance	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	In this study, Pi1, Pi2, and D12 were introgressed to improve the blast resistance of Jin 23B and its derived hybrids, Jinyou 402 and Jinyou 207, by marker-assisted selection (MAS)
Pi1-5	None	None	blast	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	In this study, Pi1, Pi2, and D12 were introgressed to improve the blast resistance of Jin 23B and its derived hybrids, Jinyou 402 and Jinyou 207, by marker-assisted selection (MAS)
Pi1-5	None	None	blast	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Pi1, Pi2, and D12 showed a strong dosage effect on the resistance to blast in the hybrid background during the entire growth duration in the field condition, being very useful for breeding blast-resistant hybrids
Pi1-5	None	None	blast	Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice	Three major genes (Pi1, Piz-5 and Pita) for blast resistance on chromosomes 11, 6 and 12, respectively, were fine-mapped and closely linked RFLP markers identified
Pi1-5	None	None	resistant	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Pi1, Pi2, and D12 showed a strong dosage effect on the resistance to blast in the hybrid background during the entire growth duration in the field condition, being very useful for breeding blast-resistant hybrids
Pi1-5	None	None	breeding	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Pi1, Pi2, and D12 showed a strong dosage effect on the resistance to blast in the hybrid background during the entire growth duration in the field condition, being very useful for breeding blast-resistant hybrids
Pi1-5	None	None	magnaporthe oryzae	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	We report the isolation of Pi1, a gene conferring broad-spectrum resistance to rice blast (Magnaporthe oryzae)
Pi1-5	None	None	growth	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Pi1, Pi2, and D12 showed a strong dosage effect on the resistance to blast in the hybrid background during the entire growth duration in the field condition, being very useful for breeding blast-resistant hybrids
Pi1-5	None	None	blast	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	We report the isolation of Pi1, a gene conferring broad-spectrum resistance to rice blast (Magnaporthe oryzae)
Pi1-5	None	None	blast	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast
Pi1-5	None	None	blast resistance	Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice	Three major genes (Pi1, Piz-5 and Pita) for blast resistance on chromosomes 11, 6 and 12, respectively, were fine-mapped and closely linked RFLP markers identified
Pi1-5	None	None	blast resistance	Rice Blast Resistance Gene <i>Pi1</i> Identified by MRG4766 Marker in 173 Yunnan Rice Landraces	Rice Blast Resistance Gene <i>Pi1</i> Identified by MRG4766 Marker in 173 Yunnan Rice Landraces
Pi1-6	None	None	blast	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	We report the isolation of Pi1, a gene conferring broad-spectrum resistance to rice blast (Magnaporthe oryzae)
Pi1-6	None	None	blast	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast
Pi1-6	None	None	blast	Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice	Three major genes (Pi1, Piz-5 and Pita) for blast resistance on chromosomes 11, 6 and 12, respectively, were fine-mapped and closely linked RFLP markers identified
Pi1-6	None	None	blast resistance	Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice	Three major genes (Pi1, Piz-5 and Pita) for blast resistance on chromosomes 11, 6 and 12, respectively, were fine-mapped and closely linked RFLP markers identified
Pi1-6	None	None	blast	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	In this study, Pi1, Pi2, and D12 were introgressed to improve the blast resistance of Jin 23B and its derived hybrids, Jinyou 402 and Jinyou 207, by marker-assisted selection (MAS)
Pi1-6	None	None	blast	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Pi1, Pi2, and D12 showed a strong dosage effect on the resistance to blast in the hybrid background during the entire growth duration in the field condition, being very useful for breeding blast-resistant hybrids
Pi1-6	None	None	resistant	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Pi1, Pi2, and D12 showed a strong dosage effect on the resistance to blast in the hybrid background during the entire growth duration in the field condition, being very useful for breeding blast-resistant hybrids
Pi1-6	None	None	blast resistance	Rice Blast Resistance Gene <i>Pi1</i> Identified by MRG4766 Marker in 173 Yunnan Rice Landraces	Rice Blast Resistance Gene <i>Pi1</i> Identified by MRG4766 Marker in 173 Yunnan Rice Landraces
Pi1-6	None	None	growth	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Pi1, Pi2, and D12 showed a strong dosage effect on the resistance to blast in the hybrid background during the entire growth duration in the field condition, being very useful for breeding blast-resistant hybrids
Pi1-6	None	None	magnaporthe oryzae	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	We report the isolation of Pi1, a gene conferring broad-spectrum resistance to rice blast (Magnaporthe oryzae)
Pi1-6	None	None	blast resistance	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	In this study, Pi1, Pi2, and D12 were introgressed to improve the blast resistance of Jin 23B and its derived hybrids, Jinyou 402 and Jinyou 207, by marker-assisted selection (MAS)
Pi1-6	None	None	blast	Rice Blast Resistance Gene <i>Pi1</i> Identified by MRG4766 Marker in 173 Yunnan Rice Landraces	Rice Blast Resistance Gene <i>Pi1</i> Identified by MRG4766 Marker in 173 Yunnan Rice Landraces
Pi1-6	None	None	breeding	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Pi1, Pi2, and D12 showed a strong dosage effect on the resistance to blast in the hybrid background during the entire growth duration in the field condition, being very useful for breeding blast-resistant hybrids
Pi21	Os04g0401000	LOC_Os04g32850	defense response	Loss of function of a proline-containing protein confers durable disease resistance in rice	Wild-type Pi21 appears to slow the plant's defense responses, which may support optimization of defense mechanisms
Pi21	Os04g0401000	LOC_Os04g32850	blast	Loss of function of a proline-containing protein confers durable disease resistance in rice	The resistant pi21 allele, which is found in some strains of japonica rice, could improve blast resistance of rice worldwide
Pi21	Os04g0401000	LOC_Os04g32850	blast resistance	Loss of function of a proline-containing protein confers durable disease resistance in rice	The resistant pi21 allele, which is found in some strains of japonica rice, could improve blast resistance of rice worldwide
Pi21	Os04g0401000	LOC_Os04g32850	resistant	Loss of function of a proline-containing protein confers durable disease resistance in rice	The resistant pi21 allele, which is found in some strains of japonica rice, could improve blast resistance of rice worldwide
Pi21	Os04g0401000	LOC_Os04g32850	defense	Loss of function of a proline-containing protein confers durable disease resistance in rice	Wild-type Pi21 appears to slow the plant's defense responses, which may support optimization of defense mechanisms
Pi21	Os04g0401000	LOC_Os04g32850	blast	QTL analysis and mapping of pi21 , a recessive gene for field resistance to rice blast in Japanese upland rice	QTL analysis and mapping of pi21 , a recessive gene for field resistance to rice blast in Japanese upland rice
Pi21	Os04g0401000	LOC_Os04g32850	resistance	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.
Pi21	Os04g0401000	LOC_Os04g32850	resistance	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.	The pi21 gene confers partial and durable resistance to Magnaporthe oryzae
Pi21	Os04g0401000	LOC_Os04g32850	resistance	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.	However, little is known regarding the molecular mechanisms of resistance mediated by the loss-of-function of Pi21
Pi21	Os04g0401000	LOC_Os04g32850	resistance	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.	This study highlights possible candidate genes that may serve a function in the partial rice blast resistance mediated by the loss-of-function of Pi21 and increase our understanding of the molecular mechanisms involved in partial resistance against M
Pi21	Os04g0401000	LOC_Os04g32850	defense	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.
Pi21	Os04g0401000	LOC_Os04g32850	blast	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.	This study highlights possible candidate genes that may serve a function in the partial rice blast resistance mediated by the loss-of-function of Pi21 and increase our understanding of the molecular mechanisms involved in partial resistance against M
Pi21	Os04g0401000	LOC_Os04g32850	magnaporthe oryzae	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.
Pi21	Os04g0401000	LOC_Os04g32850	magnaporthe oryzae	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.	The pi21 gene confers partial and durable resistance to Magnaporthe oryzae
Pi21	Os04g0401000	LOC_Os04g32850	blast resistance	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae.	This study highlights possible candidate genes that may serve a function in the partial rice blast resistance mediated by the loss-of-function of Pi21 and increase our understanding of the molecular mechanisms involved in partial resistance against M
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast resistance	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	) blast resistance allele of Pid3, designated Pi25, from a stable blast resistance cultivar Gumei2
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast resistance	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	Over-expression analysis and complementation test showed that Pi25 conferred blast resistance to M
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast resistance	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	Although the mechanism of Pi25/Pid3-mediated resistance needs to be further investigated, the isolation of the allele would facilitate the utilization of Pi25/Pid3 in rice blast resistance breeding program via transgenic approach and marker assisted selection
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	breeding	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	Although the mechanism of Pi25/Pid3-mediated resistance needs to be further investigated, the isolation of the allele would facilitate the utilization of Pi25/Pid3 in rice blast resistance breeding program via transgenic approach and marker assisted selection
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes	Through this approach, we identified a new blast resistance gene, Pid3, in the indica variety, Digu
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes	Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	Genetic control of rice blast resistance in the durably resistant cultivar Gumei 2 against multiple isolates	The gene cluster was located to chromosome 6 and includes two genes mapped previously, Pi25(t), against Chinese rice blast isolate 92-183 (race ZC15) and Pi26(t) against Philippine rice blast isolate Ca89 (lineage 4), and a gene for resistance against Philippine rice blast isolate 92330-5 (lineage 17)
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	) blast resistance allele of Pid3, designated Pi25, from a stable blast resistance cultivar Gumei2
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	Although the mechanism of Pi25/Pid3-mediated resistance needs to be further investigated, the isolation of the allele would facilitate the utilization of Pi25/Pid3 in rice blast resistance breeding program via transgenic approach and marker assisted selection
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	Mapping of leaf and neck blast resistance genes with resistance gene analog, RAPD and RFLP in rice	Pi25( t) conferred resistance to both leaf and neck blast, and its resistance allele was from Gumei 2
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	Mapping of leaf and neck blast resistance genes with resistance gene analog, RAPD and RFLP in rice	In a natural infection test in a blast hot-spot, Pi25(t) exhibited high resistance to neck blast, while Pi24(t) showed little effect
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	magnaporthe oryzae	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	leaf	Mapping of leaf and neck blast resistance genes with resistance gene analog, RAPD and RFLP in rice	Pi25( t) conferred resistance to both leaf and neck blast, and its resistance allele was from Gumei 2
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast resistance	Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes	Through this approach, we identified a new blast resistance gene, Pid3, in the indica variety, Digu
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast resistance	Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes	Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	Over-expression analysis and complementation test showed that Pi25 conferred blast resistance to M
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	resistance	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	resistance	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	In this study, the re-sequencing data from 3,000 rice genomes project (3 K RGP) was used to analyze the allelic variation at the rice blast resistance (R) Pid3 locus
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	resistance	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	Pid3 alleles in most japonica rice accessions were pseudogenes due to premature stop mutations, while those in most indica rice accessions were identical to the functional haplotype Hap_6, which had a similar resistance spectrum as the previously reported Pid3 gene
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	In this study, the re-sequencing data from 3,000 rice genomes project (3 K RGP) was used to analyze the allelic variation at the rice blast resistance (R) Pid3 locus
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	breeding	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	By sequencing and CAPS marker analyzing the Pid3 alleles in widespread cultivars in China, we verified that Hap_6 had been widely deployed in indica rice breeding of China
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	breeding	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	Thus, we suggest that the priority for utilization of the Pid3 locus in rice breeding should be on introducing the functional Pid3 alleles into japonica rice cultivars and the functional alleles of non-Hap_6 haplotypes into indica rice cultivars for increasing genetic diversity
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast resistance	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.
Pi25|Pid3	Os06g0330100	LOC_Os06g22460	blast resistance	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	In this study, the re-sequencing data from 3,000 rice genomes project (3 K RGP) was used to analyze the allelic variation at the rice blast resistance (R) Pid3 locus
Pi36	Os08g0150150	LOC_Os08g05440	blast	Genetic and physical mapping of Pi36(t), a novel rice blast resistance gene located on rice chromosome 8	To physically map this locus, the Pi36(t)-linked markers were mapped by electronic hybridization to bacterial artificial chromosome (BAC) or P1 artificial chromosome (PAC) clones of Nipponbare, and a contig map was constructed in silico through Pairwise BLAST analysis
Pi36	Os08g0150150	LOC_Os08g05440	blast	Genetic and physical mapping of Pi36(t), a novel rice blast resistance gene located on rice chromosome 8	Genetic and physical mapping of Pi36(t), a novel rice blast resistance gene located on rice chromosome 8
Pi36	Os08g0150150	LOC_Os08g05440	disease	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes
Pi36	Os08g0150150	LOC_Os08g05440	jasmonate	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	Interaction between the coiled-coil domain of rice blast resistance protein Pi36 and methyl-jasmonate (MeJA) was studied by fluorescence and UV-vis spectroscopic techniques
Pi36	Os08g0150150	LOC_Os08g05440	jasmonate	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods
Pi36	Os08g0150150	LOC_Os08g05440	disease resistance	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes
Pi36	Os08g0150150	LOC_Os08g05440	resistant	The in silico map-based cloning of Pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus	The Pi36-encoded protein is composed of 1056 amino acids, with a single substitution event (Asp to Ser) at residue 590 associated with the resistant phenotype
Pi36	Os08g0150150	LOC_Os08g05440	sa	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	The induction of the expression of genes from both of these families suggests that both the JA and SA pathways are involved in Pi36-mediated defence
Pi36	Os08g0150150	LOC_Os08g05440	blast	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	The resistance gene Pi36 confers a stable and high level of resistance against Chinese isolates of the rice blast pathogen Magnaporthe oryzae
Pi36	Os08g0150150	LOC_Os08g05440	blast	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes
Pi36	Os08g0150150	LOC_Os08g05440	blast resistance	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	Interaction between the coiled-coil domain of rice blast resistance protein Pi36 and methyl-jasmonate (MeJA) was studied by fluorescence and UV-vis spectroscopic techniques
Pi36	Os08g0150150	LOC_Os08g05440	blast resistance	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	The binding sites of MeJA with the coiled-coil structural domain of rice blast resistance protein Pi36 were found to approach the microenvironment of both Tyr and Trp by the synchronous fluorescence spectrometry
Pi36	Os08g0150150	LOC_Os08g05440	blast resistance	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	The distance r between donor (the coiled-coil domain of rice blast resistance protein Pi36) and acceptor (MeJA) was obtained according to Forster theory of non-radioactive energy transfer
Pi36	Os08g0150150	LOC_Os08g05440	blast resistance	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods
Pi36	Os08g0150150	LOC_Os08g05440	ja	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	The induction of the expression of genes from both of these families suggests that both the JA and SA pathways are involved in Pi36-mediated defence
Pi36	Os08g0150150	LOC_Os08g05440	magnaporthe oryzae	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	The resistance gene Pi36 confers a stable and high level of resistance against Chinese isolates of the rice blast pathogen Magnaporthe oryzae
Pi36	Os08g0150150	LOC_Os08g05440	blast	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	Interaction between the coiled-coil domain of rice blast resistance protein Pi36 and methyl-jasmonate (MeJA) was studied by fluorescence and UV-vis spectroscopic techniques
Pi36	Os08g0150150	LOC_Os08g05440	blast	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	The binding sites of MeJA with the coiled-coil structural domain of rice blast resistance protein Pi36 were found to approach the microenvironment of both Tyr and Trp by the synchronous fluorescence spectrometry
Pi36	Os08g0150150	LOC_Os08g05440	blast	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	The distance r between donor (the coiled-coil domain of rice blast resistance protein Pi36) and acceptor (MeJA) was obtained according to Forster theory of non-radioactive energy transfer
Pi36	Os08g0150150	LOC_Os08g05440	blast	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods
Pi36	Os08g0150150	LOC_Os08g05440	blast resistance	Genetic and physical mapping of Pi36(t), a novel rice blast resistance gene located on rice chromosome 8	Genetic and physical mapping of Pi36(t), a novel rice blast resistance gene located on rice chromosome 8
Pi36	Os08g0150150	LOC_Os08g05440	blast resistance	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes
Pi36	Os08g0150150	LOC_Os08g05440	blast	The in silico map-based cloning of Pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus	The indica rice variety Kasalath carries Pi36, a gene that determines resistance to Chinese isolates of rice blast and that has been located to a 17-kb interval on chromosome 8
Pi36	Os08g0150150	LOC_Os08g05440	blast	The in silico map-based cloning of Pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus	Constructs containing each candidate gene were transformed into the blast-susceptible variety Q1063, which allowed the identification of Pi36-3 as the functional gene, with the other two candidates being probable pseudogenes
Pi36	Os08g0150150	LOC_Os08g05440	blast	The in silico map-based cloning of Pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus	Pi36 is a single-copy gene in rice and is more closely related to the barley powdery mildew resistance genes Mla1 and Mla6 than to the rice blast R genes Pita, Pib, Pi9, and Piz-t
Pi36	Os08g0150150	LOC_Os08g05440	blast	The in silico map-based cloning of Pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus	The in silico map-based cloning of Pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus
Pi37	Os01g0781700	LOC_Os01g57310	blast resistance	The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1	The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1
Pi37	Os01g0781700	LOC_Os01g57310	blast	The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1	1, Pi37 was constitutively expressed and only slightly induced by blast infection
Pi37	Os01g0781700	LOC_Os01g57310	blast	The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1	The four Pi37 paralogs are more closely related to maize rp1 than to any of the currently isolated rice blast R genes Pita, Pib, Pi9, Pi2, Piz-t, and Pi36
Pi37	Os01g0781700	LOC_Os01g57310	blast	The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1	The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1
Pi37	Os01g0781700	LOC_Os01g57310	blast	Genetic and physical mapping of Pi37(t), a new gene conferring resistance to rice blast in the famous cultivar St. No. 1	Genetic and physical mapping of Pi37(t), a new gene conferring resistance to rice blast in the famous cultivar St. No. 1
PI3K	Os05g0180600	LOC_Os05g08810	growth	Phosphatidylinositol 3-kinase plays a vital role in regulation of rice seed vigor via altering NADPH oxidase activity	Phosphatidylinositol 3-kinase (PI3K) has been reported to be important in normal plant growth and stress responses
PI3K	Os05g0180600	LOC_Os05g08810	seed germination	Phosphatidylinositol 3-kinase plays a vital role in regulation of rice seed vigor via altering NADPH oxidase activity	In this study, it was verified that PI3K played a vital role in rice seed germination through regulating NADPH oxidase activity
PI3K	Os05g0180600	LOC_Os05g08810	seed germination	Phosphatidylinositol 3-kinase plays a vital role in regulation of rice seed vigor via altering NADPH oxidase activity	Suppression of PI3K activity by inhibitors wortmannin or LY294002 could abate the reactive oxygen species (ROS) formation, which resulted in disturbance to the seed germination
PI3K	Os05g0180600	LOC_Os05g08810	seed germination	Phosphatidylinositol 3-kinase plays a vital role in regulation of rice seed vigor via altering NADPH oxidase activity	Taken together, these data favored the novel conclusion that PI3K regulated NADPH oxidase activity through modulating the recruitment of Rac-1 to plasma membrane and accelerated the process of rice seed germination
PI3K	Os05g0180600	LOC_Os05g08810	seed	Phosphatidylinositol 3-kinase plays a vital role in regulation of rice seed vigor via altering NADPH oxidase activity	In this study, it was verified that PI3K played a vital role in rice seed germination through regulating NADPH oxidase activity
PI3K	Os05g0180600	LOC_Os05g08810	seed	Phosphatidylinositol 3-kinase plays a vital role in regulation of rice seed vigor via altering NADPH oxidase activity	Suppression of PI3K activity by inhibitors wortmannin or LY294002 could abate the reactive oxygen species (ROS) formation, which resulted in disturbance to the seed germination
PI3K	Os05g0180600	LOC_Os05g08810	seed	Phosphatidylinositol 3-kinase plays a vital role in regulation of rice seed vigor via altering NADPH oxidase activity	Taken together, these data favored the novel conclusion that PI3K regulated NADPH oxidase activity through modulating the recruitment of Rac-1 to plasma membrane and accelerated the process of rice seed germination
Pi50	None	None	resistance	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.
Pi50	None	None	resistance	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	We characterized a novel blast resistance gene Pi50 at the Pi2/9 locus; Pi50 is derived from functional divergence of duplicated genes
Pi50	None	None	resistance	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	The unique features of Pi50 should facilitate its use in rice breeding and improve our understanding of the evolution of resistance specificities
Pi50	None	None	resistance	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	Complementation tests and resistance spectrum analyses revealed that Pi50_NBS4_1/2, not Pi50_NBS4_3/4, control the novel resistance specificity as observed in the Pi50 near isogenic line, NIL-e1
Pi50	None	None	resistance	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	The identification of Pi50 with its novel resistance specificity will facilitate the dissection of mechanisms behind the divergence and evolution of different resistance specificities at the Pi2/9 locus
Pi50	None	None	blast	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.
Pi50	None	None	blast	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	We characterized a novel blast resistance gene Pi50 at the Pi2/9 locus; Pi50 is derived from functional divergence of duplicated genes
Pi50	None	None	breeding	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	The unique features of Pi50 should facilitate its use in rice breeding and improve our understanding of the evolution of resistance specificities
Pi50	None	None	R protein	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	Pi50 shares greater than 96 % amino acid sequence identity with each of three other R proteins, i
Pi50	None	None	blast resistance	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.
Pi50	None	None	blast resistance	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	We characterized a novel blast resistance gene Pi50 at the Pi2/9 locus; Pi50 is derived from functional divergence of duplicated genes
Pi64	None	None	leaf	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Only transformants with NBS-2 conferred resistance to leaf and neck blast, validating the idea that NBS-2 represents the functional Pi64 gene
Pi64	None	None	leaf	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Furthermore, introgression of Pi64 into susceptible cultivars via gene transformation and marker-assisted selection conferred high-level and broad-spectrum leaf and neck blast resistance to indica-sourced isolates, demonstrating its potential utility in breeding BSR rice cultivars
Pi64	None	None	resistance	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Only transformants with NBS-2 conferred resistance to leaf and neck blast, validating the idea that NBS-2 represents the functional Pi64 gene
Pi64	None	None	resistance	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Furthermore, introgression of Pi64 into susceptible cultivars via gene transformation and marker-assisted selection conferred high-level and broad-spectrum leaf and neck blast resistance to indica-sourced isolates, demonstrating its potential utility in breeding BSR rice cultivars
Pi64	None	None	development	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Pi64 is constitutively expressed at all development stages and in all tissues examined
Pi64	None	None	blast	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Furthermore, introgression of Pi64 into susceptible cultivars via gene transformation and marker-assisted selection conferred high-level and broad-spectrum leaf and neck blast resistance to indica-sourced isolates, demonstrating its potential utility in breeding BSR rice cultivars
Pi64	None	None	breeding	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Furthermore, introgression of Pi64 into susceptible cultivars via gene transformation and marker-assisted selection conferred high-level and broad-spectrum leaf and neck blast resistance to indica-sourced isolates, demonstrating its potential utility in breeding BSR rice cultivars
Pi64	None	None	cytoplasm	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Pi64 protein is localized in both the cytoplasm and nucleus
Pi64	None	None	nucleus	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Pi64 protein is localized in both the cytoplasm and nucleus
Pi64	None	None	blast resistance	Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice.	Furthermore, introgression of Pi64 into susceptible cultivars via gene transformation and marker-assisted selection conferred high-level and broad-spectrum leaf and neck blast resistance to indica-sourced isolates, demonstrating its potential utility in breeding BSR rice cultivars
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	The broad-spectrum rice blast resistance gene Pi9 was cloned using a map-based cloning strategy
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	The cloned Pi9 gene provides a starting point to elucidate the molecular basis of the broad-spectrum disease resistance and the evolutionary mechanisms of blast resistance gene clusters in rice
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	disease resistance	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	The cloned Pi9 gene provides a starting point to elucidate the molecular basis of the broad-spectrum disease resistance and the evolutionary mechanisms of blast resistance gene clusters in rice
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	The broad-spectrum rice blast resistance gene Pi9 was cloned using a map-based cloning strategy
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	Semiquantitative reverse transcriptase (RT)-PCR analysis showed that Pi9 was constitutively expressed in the Pi9-resistant plants and was not induced by blast infection
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	The cloned Pi9 gene provides a starting point to elucidate the molecular basis of the broad-spectrum disease resistance and the evolutionary mechanisms of blast resistance gene clusters in rice
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	disease	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	Disease evaluation of the transgenic lines carrying the individual candidate genes confirmed that Nbs2-Pi9 is the Pi9 gene
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	disease	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	The cloned Pi9 gene provides a starting point to elucidate the molecular basis of the broad-spectrum disease resistance and the evolutionary mechanisms of blast resistance gene clusters in rice
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistant	The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice	Semiquantitative reverse transcriptase (RT)-PCR analysis showed that Pi9 was constitutively expressed in the Pi9-resistant plants and was not induced by blast infection
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	In this study, we report the introgression of a rice blast resistance gene Pi2 from VE6219 into C815S, an elite rice TGMS line, leading to the development of blast resistant TGMS lines through marker assisted selection (MAS) and phenotypic selection approaches
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Four new TGMS lines with blast resistance gene Pi2 were developed from C815S (an elite TGMS line susceptible to the blast, used as recurrent parent) and VE6219 (a blast resistant line harboring Pi2, used as donor parent)
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	In this study, we report the introgression of a rice blast resistance gene Pi2 from VE6219 into C815S, an elite rice TGMS line, leading to the development of blast resistant TGMS lines through marker assisted selection (MAS) and phenotypic selection approaches
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Four new TGMS lines with blast resistance gene Pi2 were developed from C815S (an elite TGMS line susceptible to the blast, used as recurrent parent) and VE6219 (a blast resistant line harboring Pi2, used as donor parent)
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	The broad-spectrum and durable rice blast resistant gene Pi2 was introgressed into the elite TGMS line C815S background
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	sterile	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	development	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	In this study, we report the introgression of a rice blast resistance gene Pi2 from VE6219 into C815S, an elite rice TGMS line, leading to the development of blast resistant TGMS lines through marker assisted selection (MAS) and phenotypic selection approaches
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistant	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	In this study, we report the introgression of a rice blast resistance gene Pi2 from VE6219 into C815S, an elite rice TGMS line, leading to the development of blast resistant TGMS lines through marker assisted selection (MAS) and phenotypic selection approaches
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistant	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Four new TGMS lines with blast resistance gene Pi2 were developed from C815S (an elite TGMS line susceptible to the blast, used as recurrent parent) and VE6219 (a blast resistant line harboring Pi2, used as donor parent)
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistant	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	The broad-spectrum and durable rice blast resistant gene Pi2 was introgressed into the elite TGMS line C815S background
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	breeding	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	In this study, we report the introgression of a rice blast resistance gene Pi2 from VE6219 into C815S, an elite rice TGMS line, leading to the development of blast resistant TGMS lines through marker assisted selection (MAS) and phenotypic selection approaches
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Four new TGMS lines with blast resistance gene Pi2 were developed from C815S (an elite TGMS line susceptible to the blast, used as recurrent parent) and VE6219 (a blast resistant line harboring Pi2, used as donor parent)
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	The Pi2 and Pi9 genes confer broad-spectrum resistance against diverse blast isolates
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Development of allele-specific markers for Pi2 and Pi9 would facilitate breeding of blast resistant rice by using the two blast resistance genes
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Of the 434 accessions tested, while one indica restorer line Huazhan was identified harboring the Pi2 resistance allele, no other rice line was identified harboring the Pi2 or Pi9 resistance alleles
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	development	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Development of allele-specific markers for Pi2 and Pi9 would facilitate breeding of blast resistant rice by using the two blast resistance genes
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	The Pi2 and Pi9 genes confer broad-spectrum resistance against diverse blast isolates
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Development of allele-specific markers for Pi2 and Pi9 would facilitate breeding of blast resistant rice by using the two blast resistance genes
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	breeding	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Development of allele-specific markers for Pi2 and Pi9 would facilitate breeding of blast resistant rice by using the two blast resistance genes
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	breeding	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	The two newly developed markers should be highly useful for using Pi2 and Pi9 in marker-assisted selection (MAS) breeding programs
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistant	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Development of allele-specific markers for Pi2 and Pi9 would facilitate breeding of blast resistant rice by using the two blast resistance genes
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistant	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	In this work, we developed two new markers, named Pi9-Pro and Pi2-LRR respectively, targeting the unique polymorphisms of the resistant and susceptible alleles of Pi2 and of Pi9
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Development of allele-specific markers for Pi2 and Pi9 would facilitate breeding of blast resistant rice by using the two blast resistance genes
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Allele Mining and Selective Patterns of Pi9 Gene in a Set of Rice Landraces from India.	Allelic variants of the broad-spectrum blast resistance gene, Pi9 (nucleotide binding site-leucine-rich repeat region) have been analyzed in Indian rice landraces
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Allele Mining and Selective Patterns of Pi9 Gene in a Set of Rice Landraces from India.	Six of them were further selected on the basis of their resistance and susceptible pattern for virulence analysis and selective pattern study of Pi9 gene
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	resistance	Allele Mining and Selective Patterns of Pi9 Gene in a Set of Rice Landraces from India.	All the blast resistance Pi9 alleles were grouped into one cluster, whereas Pi9 alleles of susceptible landraces formed another cluster even though these landraces have a low level of DNA polymorphisms
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	Allele Mining and Selective Patterns of Pi9 Gene in a Set of Rice Landraces from India.	Allelic variants of the broad-spectrum blast resistance gene, Pi9 (nucleotide binding site-leucine-rich repeat region) have been analyzed in Indian rice landraces
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast	Allele Mining and Selective Patterns of Pi9 Gene in a Set of Rice Landraces from India.	All the blast resistance Pi9 alleles were grouped into one cluster, whereas Pi9 alleles of susceptible landraces formed another cluster even though these landraces have a low level of DNA polymorphisms
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	Allele Mining and Selective Patterns of Pi9 Gene in a Set of Rice Landraces from India.	Allelic variants of the broad-spectrum blast resistance gene, Pi9 (nucleotide binding site-leucine-rich repeat region) have been analyzed in Indian rice landraces
Pi9|Piz-t|Pi2	Os06g0286700	LOC_Os06g17900	blast resistance	Allele Mining and Selective Patterns of Pi9 Gene in a Set of Rice Landraces from India.	All the blast resistance Pi9 alleles were grouped into one cluster, whereas Pi9 alleles of susceptible landraces formed another cluster even though these landraces have a low level of DNA polymorphisms
Pib	None	None	disease	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes	The deduced amino acid sequence of the Pib gene product contains a nucleotide binding site (NBS) and leucine-rich repeats (LRRs); thus, Pib is a member of the NBS-LRR class of plant disease resistance genes
Pib	None	None	disease	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes
Pib	None	None	disease resistance	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes	The deduced amino acid sequence of the Pib gene product contains a nucleotide binding site (NBS) and leucine-rich repeats (LRRs); thus, Pib is a member of the NBS-LRR class of plant disease resistance genes
Pib	None	None	disease resistance	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes
Pib	None	None	disease	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)
Pib	None	None	magnaporthe oryzae	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)
Pib	None	None	blast	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes	Here we describe the isolation and characterization of Pib, one of the rice blast resistance genes
Pib	None	None	blast	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes
Pib	None	None	blast resistance	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)	We report the development of pyramided lines with two major blast resistance genes, Pish and Pib, and the evaluation of the combining effect of them
Pib	None	None	blast resistance	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes	Here we describe the isolation and characterization of Pib, one of the rice blast resistance genes
Pib	None	None	blast resistance	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes
Pib	None	None	blast disease	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)
Pib	None	None	blast	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)	We report the development of pyramided lines with two major blast resistance genes, Pish and Pib, and the evaluation of the combining effect of them
Pib	None	None	blast	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)	The two genes pyramided lines were selected from the progenies of a cross between one near isogenic line (NIL), which harbours Pish, and another NIL, which harbours Pib, in the genetic background of blast susceptible variety, CO 39
Pib	None	None	blast	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)	We confirmed the additive effect of Pish and Pib in the pyramided lines by their reaction patterns to blast isolates, suggesting the potential availabilities of the combinations of these genes
Pib	None	None	blast	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)	Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)
Pib	None	None	temperature	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes	Pib gene expression was induced upon altered environmental conditions, such as altered temperatures and darkness
Pib	None	None	resistance	Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib.	The rice blast resistance gene Pib confers broad-spectrum resistance against Southeast Asian M
Pib	None	None	resistance	Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib.	Together, the new Pib alleles are an important genetic resource for rice blast resistance breeding programs and provide new information on rice-M
Pib	None	None	blast	Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib.	The rice blast resistance gene Pib confers broad-spectrum resistance against Southeast Asian M
Pib	None	None	blast	Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib.	Together, the new Pib alleles are an important genetic resource for rice blast resistance breeding programs and provide new information on rice-M
Pib	None	None	breeding	Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib.	Together, the new Pib alleles are an important genetic resource for rice blast resistance breeding programs and provide new information on rice-M
Pib	None	None	blast resistance	Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib.	The rice blast resistance gene Pib confers broad-spectrum resistance against Southeast Asian M
Pib	None	None	blast resistance	Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of Rice Blast Resistance Gene Pib.	Together, the new Pib alleles are an important genetic resource for rice blast resistance breeding programs and provide new information on rice-M
PIBP1	Os03g0713600	LOC_Os03g50560	transcription factor	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	We find that PIBP1 and a homolog, Os06 g02240, bind DNA and function as unconventional transcription factors at the promoters of the defense genes OsWAK14 and OsPAL1, activating their expression
PIBP1	Os03g0713600	LOC_Os03g50560	resistance	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	Here, we identify PIBP1 (PigmR-INTERACTING and BLAST RESISTANCE PROTEIN 1), an RRM (RNA-recognition motif) protein that specifically interacts with PigmR and other similar NLRs to trigger blast resistance
PIBP1	Os03g0713600	LOC_Os03g50560	resistance	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	PigmR-promoted nuclear accumulation of PIBP1 ensures full blast resistance
PIBP1	Os03g0713600	LOC_Os03g50560	resistance	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	Knockout of PIBP1 and Os06 g02240 greatly attenuated blast resistance
PIBP1	Os03g0713600	LOC_Os03g50560	defense	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	We find that PIBP1 and a homolog, Os06 g02240, bind DNA and function as unconventional transcription factors at the promoters of the defense genes OsWAK14 and OsPAL1, activating their expression
PIBP1	Os03g0713600	LOC_Os03g50560	blast	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	Here, we identify PIBP1 (PigmR-INTERACTING and BLAST RESISTANCE PROTEIN 1), an RRM (RNA-recognition motif) protein that specifically interacts with PigmR and other similar NLRs to trigger blast resistance
PIBP1	Os03g0713600	LOC_Os03g50560	blast	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	PigmR-promoted nuclear accumulation of PIBP1 ensures full blast resistance
PIBP1	Os03g0713600	LOC_Os03g50560	blast	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	Knockout of PIBP1 and Os06 g02240 greatly attenuated blast resistance
PIBP1	Os03g0713600	LOC_Os03g50560	blast resistance	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	Here, we identify PIBP1 (PigmR-INTERACTING and BLAST RESISTANCE PROTEIN 1), an RRM (RNA-recognition motif) protein that specifically interacts with PigmR and other similar NLRs to trigger blast resistance
PIBP1	Os03g0713600	LOC_Os03g50560	blast resistance	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	PigmR-promoted nuclear accumulation of PIBP1 ensures full blast resistance
PIBP1	Os03g0713600	LOC_Os03g50560	blast resistance	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	Knockout of PIBP1 and Os06 g02240 greatly attenuated blast resistance
Pid4	Os06g0287500	LOC_Os06g17950	leaf	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Introduction of Pid4 into susceptible rice cultivars confers race-specific resistance to leaf and neck blast
Pid4	Os06g0287500	LOC_Os06g17950	resistance	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.
Pid4	Os06g0287500	LOC_Os06g17950	resistance	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Introduction of Pid4 into susceptible rice cultivars confers race-specific resistance to leaf and neck blast
Pid4	Os06g0287500	LOC_Os06g17950	resistance	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Amino acid sequence comparison and blast resistance spectrum tests showed that Pid4 is a novel R gene, different from the previously reported R genes located in the same gene cluster
Pid4	Os06g0287500	LOC_Os06g17950	blast	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.
Pid4	Os06g0287500	LOC_Os06g17950	blast	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Here, we reported the isolation of blast R gene Pid4 using comparative transcriptomic profiling and genome-wide sequence analysis
Pid4	Os06g0287500	LOC_Os06g17950	blast	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Introduction of Pid4 into susceptible rice cultivars confers race-specific resistance to leaf and neck blast
Pid4	Os06g0287500	LOC_Os06g17950	blast	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Amino acid sequence comparison and blast resistance spectrum tests showed that Pid4 is a novel R gene, different from the previously reported R genes located in the same gene cluster
Pid4	Os06g0287500	LOC_Os06g17950	cytoplasm	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	The Pid4 protein is localized in both the nucleus and cytoplasm
Pid4	Os06g0287500	LOC_Os06g17950	nucleus	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	The Pid4 protein is localized in both the nucleus and cytoplasm
Pid4	Os06g0287500	LOC_Os06g17950	blast resistance	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.
Pid4	Os06g0287500	LOC_Os06g17950	blast resistance	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	Amino acid sequence comparison and blast resistance spectrum tests showed that Pid4 is a novel R gene, different from the previously reported R genes located in the same gene cluster
Pik-1	None	None	blast	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The rice blast resistance gene Pik, which is one of the five classical alleles located at the Pik locus on the long arm of chromosome 11, confers high and stable resistance to many Chinese rice blast isolates
Pik-1	None	None	blast	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
Pik-1	None	None	blast resistance	Characterization of the rice blast resistance gene Pik cloned from Kanto51	To study similar, but distinct, plant disease resistance (R) specificities exhibited by allelic genes at the rice blast resistance locus Pik/Pikm, we cloned the Pik gene from rice cultivar Kanto51 and compared its molecular features with those of Pikm and of another Pik gene cloned from cv
Pik-1	None	None	blast resistance	Characterization of the rice blast resistance gene Pik cloned from Kanto51	Characterization of the rice blast resistance gene Pik cloned from Kanto51
Pik-1	None	None	disease resistance	Characterization of the rice blast resistance gene Pik cloned from Kanto51	To study similar, but distinct, plant disease resistance (R) specificities exhibited by allelic genes at the rice blast resistance locus Pik/Pikm, we cloned the Pik gene from rice cultivar Kanto51 and compared its molecular features with those of Pikm and of another Pik gene cloned from cv
Pik-1	None	None	blast	Characterization of the rice blast resistance gene Pik cloned from Kanto51	To study similar, but distinct, plant disease resistance (R) specificities exhibited by allelic genes at the rice blast resistance locus Pik/Pikm, we cloned the Pik gene from rice cultivar Kanto51 and compared its molecular features with those of Pikm and of another Pik gene cloned from cv
Pik-1	None	None	blast	Characterization of the rice blast resistance gene Pik cloned from Kanto51	Characterization of the rice blast resistance gene Pik cloned from Kanto51
Pik-1	None	None	blast resistance	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The rice blast resistance gene Pik, which is one of the five classical alleles located at the Pik locus on the long arm of chromosome 11, confers high and stable resistance to many Chinese rice blast isolates
Pik-1	None	None	blast resistance	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
Pik-1	None	None	disease	Characterization of the rice blast resistance gene Pik cloned from Kanto51	To study similar, but distinct, plant disease resistance (R) specificities exhibited by allelic genes at the rice blast resistance locus Pik/Pikm, we cloned the Pik gene from rice cultivar Kanto51 and compared its molecular features with those of Pikm and of another Pik gene cloned from cv
Pik-1	None	None	domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	Pik is a younger allele at the locus that probably emerged after rice domestication
Pik-1	None	None	domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
Pik-2	None	None	disease	Characterization of the rice blast resistance gene Pik cloned from Kanto51	To study similar, but distinct, plant disease resistance (R) specificities exhibited by allelic genes at the rice blast resistance locus Pik/Pikm, we cloned the Pik gene from rice cultivar Kanto51 and compared its molecular features with those of Pikm and of another Pik gene cloned from cv
Pik-2	None	None	blast	Characterization of the rice blast resistance gene Pik cloned from Kanto51	To study similar, but distinct, plant disease resistance (R) specificities exhibited by allelic genes at the rice blast resistance locus Pik/Pikm, we cloned the Pik gene from rice cultivar Kanto51 and compared its molecular features with those of Pikm and of another Pik gene cloned from cv
Pik-2	None	None	blast	Characterization of the rice blast resistance gene Pik cloned from Kanto51	Characterization of the rice blast resistance gene Pik cloned from Kanto51
Pik-2	None	None	domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	Pik is a younger allele at the locus that probably emerged after rice domestication
Pik-2	None	None	domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
Pik-2	None	None	disease resistance	Characterization of the rice blast resistance gene Pik cloned from Kanto51	To study similar, but distinct, plant disease resistance (R) specificities exhibited by allelic genes at the rice blast resistance locus Pik/Pikm, we cloned the Pik gene from rice cultivar Kanto51 and compared its molecular features with those of Pikm and of another Pik gene cloned from cv
Pik-2	None	None	blast resistance	Characterization of the rice blast resistance gene Pik cloned from Kanto51	To study similar, but distinct, plant disease resistance (R) specificities exhibited by allelic genes at the rice blast resistance locus Pik/Pikm, we cloned the Pik gene from rice cultivar Kanto51 and compared its molecular features with those of Pikm and of another Pik gene cloned from cv
Pik-2	None	None	blast resistance	Characterization of the rice blast resistance gene Pik cloned from Kanto51	Characterization of the rice blast resistance gene Pik cloned from Kanto51
Pik-2	None	None	blast resistance	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The rice blast resistance gene Pik, which is one of the five classical alleles located at the Pik locus on the long arm of chromosome 11, confers high and stable resistance to many Chinese rice blast isolates
Pik-2	None	None	blast resistance	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
Pik-2	None	None	blast	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The rice blast resistance gene Pik, which is one of the five classical alleles located at the Pik locus on the long arm of chromosome 11, confers high and stable resistance to many Chinese rice blast isolates
Pik-2	None	None	blast	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	magnaporthe oryzae	The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice	The Pi54 gene (Pi-k(h)) confers a high degree of resistance to diverse strains of the fungus Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	defense response	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	Detection of callose deposition in resistant plants containing Pi-k h (Pi54) gene implicates its involvement in the initiation of defense response cascade
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistant	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	In our effort to identify more effective forms of this gene, we isolated an orthologue of Pi54 named as Pi54rh from the blast-resistant wild species of rice, Oryza rhizomatis, using allele mining approach and validated by complementation
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	The blast resistance candidate gene Pi-k h (Pi54) was cloned into a plant transformation vector and the construct was used to transform a japonica cultivar of rice Taipei 309, which is susceptible to M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice	The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	The blast resistance candidate gene Pi-k h (Pi54) was cloned into a plant transformation vector and the construct was used to transform a japonica cultivar of rice Taipei 309, which is susceptible to M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	magnaporthe oryzae	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	The dominant rice blast resistance gene, Pi54 confers resistance to Magnaporthe oryzae in different parts of India
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	magnaporthe oryzae	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	The dominant rice blast resistance gene, Pi54 confers resistance to Magnaporthe oryzae in different parts of India
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	In our effort to identify more effective forms of this gene, we isolated an orthologue of Pi54 named as Pi54rh from the blast-resistant wild species of rice, Oryza rhizomatis, using allele mining approach and validated by complementation
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	In this study, for the first time, we demonstrated that a rice blast resistance gene Pi54rh cloned from wild species of rice provides broad spectrum resistance to M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	The dominant rice blast resistance gene, Pi54 confers resistance to Magnaporthe oryzae in different parts of India
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	In this study, for the first time, we demonstrated that a rice blast resistance gene Pi54rh cloned from wild species of rice provides broad spectrum resistance to M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	magnaporthe oryzae	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	disease	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	The Pi54rh belongs to CC-NBS-LRR family of disease resistance genes with a unique Zinc finger (C(3)H type) domain
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice	The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	transcription factor	The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice	This study suggests the activation of defence response and transcription factor-related genes and a higher expression of key enzymes involved in the defence response pathway in the rice line TP-Pi54, thus leading to incompatible host-pathogen interaction
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	defense	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	Detection of callose deposition in resistant plants containing Pi-k h (Pi54) gene implicates its involvement in the initiation of defense response cascade
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistant	Functional complementation of rice blast resistance gene Pi-k h (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	Detection of callose deposition in resistant plants containing Pi-k h (Pi54) gene implicates its involvement in the initiation of defense response cascade
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	disease resistance	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae	The Pi54rh belongs to CC-NBS-LRR family of disease resistance genes with a unique Zinc finger (C(3)H type) domain
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	grain	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	The transgenic lines containing Pi54 gene have higher tiller number, grain weight, epicotyl length, and yield compared to the non-transgenic control
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	tiller	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	The transgenic lines containing Pi54 gene have higher tiller number, grain weight, epicotyl length, and yield compared to the non-transgenic control
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	yield	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	The transgenic lines containing Pi54 gene have higher tiller number, grain weight, epicotyl length, and yield compared to the non-transgenic control
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	This is a novel report in which chromosomal position of the rice blast resistance gene Pi54 was not found to affect significantly the resistance phenotype or morphological traits
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistant	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	Three different transgenic lines containing Pi54 and its orthologue Pi54rh were shown to be resistant to different races of M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	breeding	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	These results will facilitate precise utilization of Pi54 gene and its orthologue in breeding programs for the development of rice cultivars with broad spectrum and durable resistance to M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	tiller number	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	The transgenic lines containing Pi54 gene have higher tiller number, grain weight, epicotyl length, and yield compared to the non-transgenic control
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	grain weight	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	The transgenic lines containing Pi54 gene have higher tiller number, grain weight, epicotyl length, and yield compared to the non-transgenic control
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	development	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	These results will facilitate precise utilization of Pi54 gene and its orthologue in breeding programs for the development of rice cultivars with broad spectrum and durable resistance to M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	This is a novel report in which chromosomal position of the rice blast resistance gene Pi54 was not found to affect significantly the resistance phenotype or morphological traits
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	This is a novel report in which chromosomal position of the rice blast resistance gene Pi54 was not found to affect significantly the resistance phenotype or morphological traits
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	Pi54 gene imparts resistance against M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	These results will facilitate precise utilization of Pi54 gene and its orthologue in breeding programs for the development of rice cultivars with broad spectrum and durable resistance to M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	This is a maiden report of extensive variability of Pi54 alleles in different landraces and cultivated varieties, possibly, attributing broad-spectrum resistance to Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	Rice blast resistant gene, Pi54 cloned from rice line, Tetep, is effective against diverse isolates of Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	magnaporthe oryzae	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	Rice blast resistant gene, Pi54 cloned from rice line, Tetep, is effective against diverse isolates of Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	magnaporthe oryzae	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	This is a maiden report of extensive variability of Pi54 alleles in different landraces and cultivated varieties, possibly, attributing broad-spectrum resistance to Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistant	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	Rice blast resistant gene, Pi54 cloned from rice line, Tetep, is effective against diverse isolates of Magnaporthe oryzae
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	quality	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	High quality sequences were generated for homologs of Pi54 gene
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Identification of novel alleles of the rice blast resistance gene Pi54.	The rice blast resistance gene Pi54 initially identified in an Indian cultivar confers broad-spectrum resistance in India
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Identification of novel alleles of the rice blast resistance gene Pi54.	Together, the newly identified Pi54 alleles expand the allelic series and are candidates for rice blast resistance breeding programs
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Identification of novel alleles of the rice blast resistance gene Pi54.	The rice blast resistance gene Pi54 initially identified in an Indian cultivar confers broad-spectrum resistance in India
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Identification of novel alleles of the rice blast resistance gene Pi54.	Together, the newly identified Pi54 alleles expand the allelic series and are candidates for rice blast resistance breeding programs
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	breeding	Identification of novel alleles of the rice blast resistance gene Pi54.	Together, the newly identified Pi54 alleles expand the allelic series and are candidates for rice blast resistance breeding programs
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistant	Identification of novel alleles of the rice blast resistance gene Pi54.	We explored the allelic diversity of the Pi54 gene among 885 Indian rice genotypes that were found resistant in our screening against field mixture of naturally existing M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Identification of novel alleles of the rice blast resistance gene Pi54.	The rice blast resistance gene Pi54 initially identified in an Indian cultivar confers broad-spectrum resistance in India
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Identification of novel alleles of the rice blast resistance gene Pi54.	Together, the newly identified Pi54 alleles expand the allelic series and are candidates for rice blast resistance breeding programs
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	The objective of this study was to determine the effects (through over-expressing and using the CaMV 35S promoter) of Pikh on MR219 resistance because it is a rice variety that is susceptible to the blast fungus pathotype P7
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	This study successfully clarified that over-expression of the Pikh gene in transgenic plants can improve their blast resistance against the M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	tolerance	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	disease	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	The objective of this study was to determine the effects (through over-expressing and using the CaMV 35S promoter) of Pikh on MR219 resistance because it is a rice variety that is susceptible to the blast fungus pathotype P7
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	This study successfully clarified that over-expression of the Pikh gene in transgenic plants can improve their blast resistance against the M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	magnaporthe oryzae	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	This study successfully clarified that over-expression of the Pikh gene in transgenic plants can improve their blast resistance against the M
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast disease	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	root	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	brachyantha was on the root of both Pi54 and #11 alleles
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	The rice blast resistance gene Pi54 was cloned from Oryza sativa ssp
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	domestication	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	Two divergent structures of Pi54 locus caused by a mobile unit containing the nearby R-gene cluster could be developed before domestication
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	The rice blast resistance gene Pi54 was cloned from Oryza sativa ssp
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blast resistance	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	The rice blast resistance gene Pi54 was cloned from Oryza sativa ssp
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	resistance	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	sheath	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	blight	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
pikh|pi54|Pi-kh	Os11g0639100	LOC_Os11g42010	bacterial blight	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
Pikm1-TS	None	None	blast	Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance	The results of the complementation analysis and an evaluation of the resistance specificity of the transgenic lines to blast isolates demonstrated that Pikm-specific resistance is conferred by cooperation of Pikm1-TS and Pikm2-TS
Pikm2-TS	None	None	blast	Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance	The results of the complementation analysis and an evaluation of the resistance specificity of the transgenic lines to blast isolates demonstrated that Pikm-specific resistance is conferred by cooperation of Pikm1-TS and Pikm2-TS
Pikp-1	None	None	blast resistance	The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes	The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes
Pikp-1	None	None	cell death	The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation	We found that any domain truncation, in either Pikp-1 or Pikp-2, prevented cell death in the presence of AVR-PikD, revealing that all domains are required for activity
Pikp-1	None	None	cell death	The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation	Further, expression of individual Pikp-1 or Pikp-2 domains did not result in cell death
Pikp-1	None	None	cell death	The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation	Mutations in the conserved P-loop and MHD sequence motifs in both Pikp-1 and Pikp-2 prevented cell death activation, demonstrating that these motifs are required for the function of the two partner NLRs
Pikp-2	Os11g0689100	LOC_Os11g46210	blast resistance	The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes	The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes
Pikp-2	Os11g0689100	LOC_Os11g46210	cell death	The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation	Further, expression of individual Pikp-1 or Pikp-2 domains did not result in cell death
Pikp-2	Os11g0689100	LOC_Os11g46210	cell death	The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation	Mutations in the conserved P-loop and MHD sequence motifs in both Pikp-1 and Pikp-2 prevented cell death activation, demonstrating that these motifs are required for the function of the two partner NLRs
PILS6b	Os05g0481900	LOC_Os05g40330	auxin	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.
PILS6b	Os05g0481900	LOC_Os05g40330	auxin	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.	 Taken together, our findings suggested that OsSPL14 can control axillary bud outgrowth and tiller number by activating the expression of OsPIN1b and PILS6b to fine-tune auxin transport in rice
PILS6b	Os05g0481900	LOC_Os05g40330	tiller	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.	 Loss of function of OsPIN1b or PILS6b increased the tiller number of rice
PILS6b	Os05g0481900	LOC_Os05g40330	tiller	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.	 Taken together, our findings suggested that OsSPL14 can control axillary bud outgrowth and tiller number by activating the expression of OsPIN1b and PILS6b to fine-tune auxin transport in rice
PILS6b	Os05g0481900	LOC_Os05g40330	auxin transport	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.
PILS6b	Os05g0481900	LOC_Os05g40330	auxin transport	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.	 Taken together, our findings suggested that OsSPL14 can control axillary bud outgrowth and tiller number by activating the expression of OsPIN1b and PILS6b to fine-tune auxin transport in rice
PILS6b	Os05g0481900	LOC_Os05g40330	tiller number	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.	 Loss of function of OsPIN1b or PILS6b increased the tiller number of rice
PILS6b	Os05g0481900	LOC_Os05g40330	tiller number	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.	 Taken together, our findings suggested that OsSPL14 can control axillary bud outgrowth and tiller number by activating the expression of OsPIN1b and PILS6b to fine-tune auxin transport in rice
PiPR1	None	LOC_Os04g53050	blast disease	Genome-wide association study identifies an NLR gene that confers partial resistance to Magnaporthe oryzae in rice.	The identification of this new non-strain specific partial R gene, tentatively named rice blast Partial Resistance gene 1 (PiPR1), provides genetic material that will be useful for understanding the partial resistance mechanism and for breeding durably resistant cultivars against blast disease of rice.
PiPR1	None	LOC_Os04g53050	blast resistance	Genome-wide association study identifies an NLR gene that confers partial resistance to Magnaporthe oryzae in rice.	The identification of this new non-strain specific partial R gene, tentatively named rice blast Partial Resistance gene 1 (PiPR1), provides genetic material that will be useful for understanding the partial resistance mechanism and for breeding durably resistant cultivars against blast disease of rice.
PISH	Os01g0782100	LOC_Os01g57340	blast	Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging	Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging
PISH	Os01g0782100	LOC_Os01g57340	blast resistance	Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging	Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging
Pit	Os01g0149500	LOC_Os01g05620	blast disease	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter
Pit	Os01g0149500	LOC_Os01g05620	disease	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter
Pit	Os01g0149500	LOC_Os01g05620	resistant	Identification of the blast resistance gene Pit in rice cultivars using functional markers	We previously showed that the resistance function of the rice blast resistance gene Pit in a resistant cultivar, K59, was mainly acquired by up-regulated promoter activity through the insertion of a long terminal repeat (LTR) retrotransposon upstream of Pit
Pit	Os01g0149500	LOC_Os01g05620	blast resistance	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter	Here, we report that a long terminal repeat (LTR) retrotransposon contributed to the evolution of the rice blast resistance gene Pit
Pit	Os01g0149500	LOC_Os01g05620	disease resistance	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter
Pit	Os01g0149500	LOC_Os01g05620	blast	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter	Here, we report that a long terminal repeat (LTR) retrotransposon contributed to the evolution of the rice blast resistance gene Pit
Pit	Os01g0149500	LOC_Os01g05620	blast	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter
Pit	Os01g0149500	LOC_Os01g05620	blast resistance	Identification of the blast resistance gene Pit in rice cultivars using functional markers	We previously showed that the resistance function of the rice blast resistance gene Pit in a resistant cultivar, K59, was mainly acquired by up-regulated promoter activity through the insertion of a long terminal repeat (LTR) retrotransposon upstream of Pit
Pit	Os01g0149500	LOC_Os01g05620	blast resistance	Identification of the blast resistance gene Pit in rice cultivars using functional markers	The sequence and expression pattern of Pit in the five cultivars were the same as those in K59 and all showed Pit-mediated blast resistance
Pit	Os01g0149500	LOC_Os01g05620	blast resistance	Identification of the blast resistance gene Pit in rice cultivars using functional markers	Identification of the blast resistance gene Pit in rice cultivars using functional markers
Pit	Os01g0149500	LOC_Os01g05620	blast	Identification of the blast resistance gene Pit in rice cultivars using functional markers	We previously showed that the resistance function of the rice blast resistance gene Pit in a resistant cultivar, K59, was mainly acquired by up-regulated promoter activity through the insertion of a long terminal repeat (LTR) retrotransposon upstream of Pit
Pit	Os01g0149500	LOC_Os01g05620	blast	Identification of the blast resistance gene Pit in rice cultivars using functional markers	The sequence and expression pattern of Pit in the five cultivars were the same as those in K59 and all showed Pit-mediated blast resistance
Pit	Os01g0149500	LOC_Os01g05620	blast	Identification of the blast resistance gene Pit in rice cultivars using functional markers	Identification of the blast resistance gene Pit in rice cultivars using functional markers
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast disease	Molecular evolution of the Pi-ta gene resistant to rice blast in wild rice (Oryza rufipogon)	Rice blast disease resistance to the fungal pathogen Magnaporthe grisea is triggered by a physical interaction between the protein products of the host R (resistance) gene, Pi-ta, and the pathogen Avr (avirulence) gene, AVR-pita
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast	Identification of a new locus, Ptr(t), required for rice blast resistance gene Pi-ta-mediated resistance	Resistance to the blast pathogen Magnaporthe oryzae is proposed to be initiated by physical binding of a putative cytoplasmic receptor encoded by a nucleotide binding site-type resistance gene, Pi-ta, to the processed elicitor encoded by the corresponding avirulence gene AVR-Pita
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast	Direct interaction of resistance gene and avirulence gene products confers rice blast resistance	Rice expressing the Pi-ta gene is resistant to strains of the rice blast fungus, Magnaporthe grisea, expressing AVR-Pita in a gene-for-gene relationship
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast resistance	tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta	The rice blast resistance (R) gene Pi-ta mediates gene-for-gene resistance against strains of the fungus Magnaporthe grisea that express avirulent alleles of AVR-Pita
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast resistance	Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice	Three major genes (Pi1, Piz-5 and Pita) for blast resistance on chromosomes 11, 6 and 12, respectively, were fine-mapped and closely linked RFLP markers identified
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	magnaporthe oryzae	Characterization ofPi-tablast resistance gene in an international rice core collection	The Pi-ta gene in rice prevents the infections by races of Magnaporthe oryzae containing AVR-Pita
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	magnaporthe oryzae	Identification of a new locus, Ptr(t), required for rice blast resistance gene Pi-ta-mediated resistance	Resistance to the blast pathogen Magnaporthe oryzae is proposed to be initiated by physical binding of a putative cytoplasmic receptor encoded by a nucleotide binding site-type resistance gene, Pi-ta, to the processed elicitor encoded by the corresponding avirulence gene AVR-Pita
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast	tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta	The rice blast resistance (R) gene Pi-ta mediates gene-for-gene resistance against strains of the fungus Magnaporthe grisea that express avirulent alleles of AVR-Pita
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast	tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta	Molecular cloning of the AVR-Pita and Pi-ta genes will aid in deployment of R genes for effective genetic control of rice blast disease
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	disease	tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta	Molecular cloning of the AVR-Pita and Pi-ta genes will aid in deployment of R genes for effective genetic control of rice blast disease
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	disease	Characterization ofPi-tablast resistance gene in an international rice core collection	In the present study, 1790 accessions were characterized for Pi-ta, and Pi-ta independent resistance genes using marker analysis, disease evaluation with the race IB-49 carrying AVR-Pita, and IE-1k not carrying AVR-Pita and sequence analysis
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast	Molecular evolution of the Pi-ta gene resistant to rice blast in wild rice (Oryza rufipogon)	Rice blast disease resistance to the fungal pathogen Magnaporthe grisea is triggered by a physical interaction between the protein products of the host R (resistance) gene, Pi-ta, and the pathogen Avr (avirulence) gene, AVR-pita
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	resistant	Direct interaction of resistance gene and avirulence gene products confers rice blast resistance	Rice expressing the Pi-ta gene is resistant to strains of the rice blast fungus, Magnaporthe grisea, expressing AVR-Pita in a gene-for-gene relationship
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast disease	tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta	Molecular cloning of the AVR-Pita and Pi-ta genes will aid in deployment of R genes for effective genetic control of rice blast disease
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	blast	Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice	Three major genes (Pi1, Piz-5 and Pita) for blast resistance on chromosomes 11, 6 and 12, respectively, were fine-mapped and closely linked RFLP markers identified
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	defense response	Direct interaction of resistance gene and avirulence gene products confers rice blast resistance	These data suggest that the AVR-Pita(176) protein binds directly to the Pi-ta LRD region inside the plant cell to initiate a Pi-ta-mediated defense response
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	disease	Molecular evolution of the Pi-ta gene resistant to rice blast in wild rice (Oryza rufipogon)	Rice blast disease resistance to the fungal pathogen Magnaporthe grisea is triggered by a physical interaction between the protein products of the host R (resistance) gene, Pi-ta, and the pathogen Avr (avirulence) gene, AVR-pita
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	defense	Direct interaction of resistance gene and avirulence gene products confers rice blast resistance	These data suggest that the AVR-Pita(176) protein binds directly to the Pi-ta LRD region inside the plant cell to initiate a Pi-ta-mediated defense response
Pita|Pi-4a	Os12g0281300	LOC_Os12g18360	disease resistance	Molecular evolution of the Pi-ta gene resistant to rice blast in wild rice (Oryza rufipogon)	Rice blast disease resistance to the fungal pathogen Magnaporthe grisea is triggered by a physical interaction between the protein products of the host R (resistance) gene, Pi-ta, and the pathogen Avr (avirulence) gene, AVR-pita
Pita2	Os12g0285100	LOC_Os12g18729	resistance	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.
Pita2	Os12g0285100	LOC_Os12g18729	resistance	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	In this study, we compared the resistance spectra controlled by Pita2 and Pita by testing their monogenic lines (MLs) in four hotspots found in the Philippines and Burundi from 2014 to 2018
Pita2	Os12g0285100	LOC_Os12g18729	resistance	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	Pathogenicity tests using 328 single-spore isolates in greenhouse further verified that IRBLta2-Re for Pita2 conferred a relatively broader spectrum resistance than those of Pita
Pita2	Os12g0285100	LOC_Os12g18729	resistance	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	Moreover, based on the resistance gene analysis of rice varieties and mutants containing Pita, it was found that Pita2 rather than Pita was responsible for the specificity to some differential isolates with AvrPita
Pita2	Os12g0285100	LOC_Os12g18729	blast	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.
Pita2	Os12g0285100	LOC_Os12g18729	blast	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	The diagnosis and survey of Pita2 in IRRI released varieties showed relatively low frequency, implying a high value of its application for breeding resistant varieties against rice blast via marker assisted selection
Pita2	Os12g0285100	LOC_Os12g18729	R protein	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.
Pita2	Os12g0285100	LOC_Os12g18729	R protein	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	Pita2 encodes a novel R protein unique from Pita, which is exactly identical to the previously cloned Ptr
Pita2	Os12g0285100	LOC_Os12g18729	breeding	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	The diagnosis and survey of Pita2 in IRRI released varieties showed relatively low frequency, implying a high value of its application for breeding resistant varieties against rice blast via marker assisted selection
Pita2	Os12g0285100	LOC_Os12g18729	resistant	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	A cluster of resistant (R) genes on rice chromosome 12 including Pita, Pita2 and Ptr has been studies for decades
Pita2	Os12g0285100	LOC_Os12g18729	resistant	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	The diagnosis and survey of Pita2 in IRRI released varieties showed relatively low frequency, implying a high value of its application for breeding resistant varieties against rice blast via marker assisted selection
Pita2	Os12g0285100	LOC_Os12g18729	blast resistance	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.
PK4|OsPK4|OsCIPK19	Os05g0514200	LOC_Os05g43840	magnesium	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins	OsPK4 and OsPK7 proteins produced in Escherichia coli were able to phosphorylate themselves and myelin basic proteins, the reaction requiring magnesium and/or manganese ions
PK4|OsPK4|OsCIPK19	Os05g0514200	LOC_Os05g43840	manganese	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins	OsPK4 and OsPK7 proteins produced in Escherichia coli were able to phosphorylate themselves and myelin basic proteins, the reaction requiring magnesium and/or manganese ions
PK4|OsPK4|OsCIPK19	Os05g0514200	LOC_Os05g43840	temperature	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins
PK4|OsPK4|OsCIPK19	Os05g0514200	LOC_Os05g43840	cytokinin	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins	The wheat gene WPK4 encodes a 56-kDa protein kinase that belongs to group 3 of the SNF1-related protein kinase family (SnRK3), and is up-regulated by light and cytokinins and down-regulated by sucrose
PK4|OsPK4|OsCIPK19	Os05g0514200	LOC_Os05g43840	cytokinin	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins	Transcripts of OsPK4 were detected in all tissues tested, and amounts were increased upon illumination, nutrient deprivation and treatment with cytokinins
PK4|OsPK4|OsCIPK19	Os05g0514200	LOC_Os05g43840	cytokinin	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins
PK4|OsPK4|OsCIPK19	Os05g0514200	LOC_Os05g43840	mitochondria	Mitochondria-Associated Pyruvate Kinase Complexes Regulate Grain Filling in Rice	Both OsPK1 and OsPK4 localized to the mitochondria and cytosol and were recruited to the mitochondria by OsPK3
PLA1	Os10g0403000	LOC_Os10g26340	reproductive	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	pla1 of rice is not only a plastochron mutant showing rapid leaf initiation without affecting phyllotaxy, but also a heterochronic mutant showing ectopic shoot formation in the reproductive phase
PLA1	Os10g0403000	LOC_Os10g26340	reproductive	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	On the basis of these findings, we propose that NL1 is an intrinsic factor that modulates and coordinates organogenesis through regulating the expression of PLA1 and other regulatory genes during reproductive development in rice
PLA1	Os10g0403000	LOC_Os10g26340	meristem	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	The shoot apical meristem of pla1 was larger than that of the wild type, although the shape was not modified
PLA1	Os10g0403000	LOC_Os10g26340	meristem	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	An in situ hybridization experiment using the histone H4 gene as a probe revealed that cell divisions are accelerated in the pla1 meristem
PLA1	Os10g0403000	LOC_Os10g26340	meristem	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	The PLA1 gene is considered to regulate the duration of the vegetative phase by controlling the rate of leaf production in the meristem
PLA1	Os10g0403000	LOC_Os10g26340	shoot	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	pla1 of rice is not only a plastochron mutant showing rapid leaf initiation without affecting phyllotaxy, but also a heterochronic mutant showing ectopic shoot formation in the reproductive phase
PLA1	Os10g0403000	LOC_Os10g26340	shoot	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	PLA1 is expressed in developing leaf primordia, bracts of the panicle, and elongating internodes, but not in the shoot apical meristem
PLA1	Os10g0403000	LOC_Os10g26340	leaf development	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	These results indicate that both PLA1 and PLA2 act downstream of the GA signal transduction pathway to regulate leaf development
PLA1	Os10g0403000	LOC_Os10g26340	reproductive	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	Because the onset of the reproductive phase in pla1 was not temporally affected, the number of leaves produced in the vegetative phase was nearly twice that produced in the wild type
PLA1	Os10g0403000	LOC_Os10g26340	reproductive	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	These results indicate that both vegetative and reproductive programs are expressed simultaneously during the reproductive phase of pla1; however, the degree varied depending on the strength of the allele
PLA1	Os10g0403000	LOC_Os10g26340	leaf development	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	Thus, pla1 provides a tool for analyzing the molecular basis of temporal regulation in leaf development
PLA1	Os10g0403000	LOC_Os10g26340	shoot apical meristem	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	PLA1 is expressed in developing leaf primordia, bracts of the panicle, and elongating internodes, but not in the shoot apical meristem
PLA1	Os10g0403000	LOC_Os10g26340	shoot apical meristem	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	The shoot apical meristem of pla1 was larger than that of the wild type, although the shape was not modified
PLA1	Os10g0403000	LOC_Os10g26340	meristem	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	PLA1 is expressed in developing leaf primordia, bracts of the panicle, and elongating internodes, but not in the shoot apical meristem
PLA1	Os10g0403000	LOC_Os10g26340	shoot	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	pla3 exhibits similar phenotypes to pla1 and pla2- a shortened plastochron, precocious leaf maturation and rachis branch-to-shoot conversion in the reproductive phase
PLA1	Os10g0403000	LOC_Os10g26340	panicle	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	Panicle development was severely disturbed in pla1 mutants
PLA1	Os10g0403000	LOC_Os10g26340	panicle	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	In the weak allele pla1-2, however, only the basal one or two primordia developed as vegetative shoots, and the remaining primordia developed to produce a truncated panicle
PLA1	Os10g0403000	LOC_Os10g26340	leaf	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	pla3 exhibits similar phenotypes to pla1 and pla2- a shortened plastochron, precocious leaf maturation and rachis branch-to-shoot conversion in the reproductive phase
PLA1	Os10g0403000	LOC_Os10g26340	leaf	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	However, in contrast to pla1 and pla2, pla3 showed pleiotropic phenotypes including enlarged embryo, seed vivipary, defects in SAM maintenance and aberrant leaf morphology
PLA1	Os10g0403000	LOC_Os10g26340	leaf	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	Rice PLASTOCHRON 1 (PLA1) and PLA2 genes regulate leaf maturation and plastochron, and their loss-of-function mutants exhibit small organs and rapid leaf emergence
PLA1	Os10g0403000	LOC_Os10g26340	leaf	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	These results indicate that both PLA1 and PLA2 act downstream of the GA signal transduction pathway to regulate leaf development
PLA1	Os10g0403000	LOC_Os10g26340	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	GA induced PLA1 and PLA2 expression, and conversely the GA-inhibitor uniconazole suppressed PLA1 and PLA2 expression
PLA1	Os10g0403000	LOC_Os10g26340	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	In pla1-4 and pla2-1 seedlings, expression levels of GA biosynthesis genes and the signal transduction gene were similar to those in wild-type seedlings
PLA1	Os10g0403000	LOC_Os10g26340	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	GA treatment slightly down-regulated the GA biosynthesis gene GA20ox2 and up-regulated the GA-catabolizing gene GA2ox4, whereas the GA biosynthesis inhibitor uniconazole up-regulated GA20ox2 and down-regulated GA2ox4 both in wild-type and pla mutants, suggesting that the GA feedback mechanism is not impaired in pla1 and pla2
PLA1	Os10g0403000	LOC_Os10g26340	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	To reveal how GA signal transduction affects the expression of PLA1 and PLA2, PLA expression in GA-signaling mutants was examined
PLA1	Os10g0403000	LOC_Os10g26340	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	These results indicate that both PLA1 and PLA2 act downstream of the GA signal transduction pathway to regulate leaf development
PLA1	Os10g0403000	LOC_Os10g26340	shoot	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	In pla1-1, many primordia of primary rachis branches were converted into vegetative shoots
PLA1	Os10g0403000	LOC_Os10g26340	shoot	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	In the weak allele pla1-2, however, only the basal one or two primordia developed as vegetative shoots, and the remaining primordia developed to produce a truncated panicle
PLA1	Os10g0403000	LOC_Os10g26340	shoot	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	The shoot apical meristem of pla1 was larger than that of the wild type, although the shape was not modified
PLA1	Os10g0403000	LOC_Os10g26340	vegetative	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	Because the onset of the reproductive phase in pla1 was not temporally affected, the number of leaves produced in the vegetative phase was nearly twice that produced in the wild type
PLA1	Os10g0403000	LOC_Os10g26340	vegetative	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	In pla1-1, many primordia of primary rachis branches were converted into vegetative shoots
PLA1	Os10g0403000	LOC_Os10g26340	vegetative	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	In the weak allele pla1-2, however, only the basal one or two primordia developed as vegetative shoots, and the remaining primordia developed to produce a truncated panicle
PLA1	Os10g0403000	LOC_Os10g26340	vegetative	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	These results indicate that both vegetative and reproductive programs are expressed simultaneously during the reproductive phase of pla1; however, the degree varied depending on the strength of the allele
PLA1	Os10g0403000	LOC_Os10g26340	vegetative	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	Accordingly, pla1 is a heterochronic mutation that extends the vegetative period
PLA1	Os10g0403000	LOC_Os10g26340	vegetative	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	The PLA1 gene is considered to regulate the duration of the vegetative phase by controlling the rate of leaf production in the meristem
PLA1	Os10g0403000	LOC_Os10g26340	vegetative	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	The expression pattern and mutant phenotype suggest that the PLA1 gene acting in developing leaf primordia affects the timing of successive leaf initiation and the termination of vegetative growth
PLA1	Os10g0403000	LOC_Os10g26340	seedling	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	In pla1-4 and pla2-1 seedlings, expression levels of GA biosynthesis genes and the signal transduction gene were similar to those in wild-type seedlings
PLA1	Os10g0403000	LOC_Os10g26340	reproductive	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	pla3 exhibits similar phenotypes to pla1 and pla2- a shortened plastochron, precocious leaf maturation and rachis branch-to-shoot conversion in the reproductive phase
PLA1	Os10g0403000	LOC_Os10g26340	growth	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	The expression pattern and mutant phenotype suggest that the PLA1 gene acting in developing leaf primordia affects the timing of successive leaf initiation and the termination of vegetative growth
PLA1	Os10g0403000	LOC_Os10g26340	leaf	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	pla1 of rice is not only a plastochron mutant showing rapid leaf initiation without affecting phyllotaxy, but also a heterochronic mutant showing ectopic shoot formation in the reproductive phase
PLA1	Os10g0403000	LOC_Os10g26340	leaf	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	Thus, pla1 provides a tool for analyzing the molecular basis of temporal regulation in leaf development
PLA1	Os10g0403000	LOC_Os10g26340	leaf	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	PLA1 is expressed in developing leaf primordia, bracts of the panicle, and elongating internodes, but not in the shoot apical meristem
PLA1	Os10g0403000	LOC_Os10g26340	leaf	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	The expression pattern and mutant phenotype suggest that the PLA1 gene acting in developing leaf primordia affects the timing of successive leaf initiation and the termination of vegetative growth
PLA1	Os10g0403000	LOC_Os10g26340	leaf	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice	A novel mutant allele of PLASTOCHRON1 (PLA1), a gene known to play a key role in regulating leaf initiation, was identified in this study
PLA1	Os10g0403000	LOC_Os10g26340	cell division	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	An in situ hybridization experiment using the histone H4 gene as a probe revealed that cell divisions are accelerated in the pla1 meristem
PLA1	Os10g0403000	LOC_Os10g26340	panicle	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450	PLA1 is expressed in developing leaf primordia, bracts of the panicle, and elongating internodes, but not in the shoot apical meristem
PLA1	Os10g0403000	LOC_Os10g26340	gibberellin	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	We found that gibberellin (GA) is the major phytohormone that promotes PLA1 and PLA2 expression
PLA1	Os10g0403000	LOC_Os10g26340	phytohormone	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	Here, we investigated how PLA1 and PLA2 genes are related to phytohormones
PLA1	Os10g0403000	LOC_Os10g26340	phytohormone	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	We found that gibberellin (GA) is the major phytohormone that promotes PLA1 and PLA2 expression
PLA1	Os10g0403000	LOC_Os10g26340	leaf	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice	The PLA1 gene is considered to regulate the duration of the vegetative phase by controlling the rate of leaf production in the meristem
PLA1	Os10g0403000	LOC_Os10g26340	leaf	PLASTOCHRON2 Regulates Leaf Initiation and Maturation in Rice	We show that PLA2 normally acts to retard the rate of leaf maturation but does so independently of PLA1, which encodes a member of the P450 family
PLA1	Os10g0403000	LOC_Os10g26340	seed	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	However, in contrast to pla1 and pla2, pla3 showed pleiotropic phenotypes including enlarged embryo, seed vivipary, defects in SAM maintenance and aberrant leaf morphology
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf development	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	These results indicate that both PLA1 and PLA2 act downstream of the GA signal transduction pathway to regulate leaf development
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	vegetative	PLASTOCHRON2 Regulates Leaf Initiation and Maturation in Rice	Here, we present a detailed analysis of plastochron2 (pla2), a rice (Oryza sativa) mutant that exhibits shortened plastochron and precocious maturation of leaves during the vegetative phase and ectopic shoot formation during the reproductive phase
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	gibberellin	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	We found that gibberellin (GA) is the major phytohormone that promotes PLA1 and PLA2 expression
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	Rice PLASTOCHRON 1 (PLA1) and PLA2 genes regulate leaf maturation and plastochron, and their loss-of-function mutants exhibit small organs and rapid leaf emergence
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	These results indicate that both PLA1 and PLA2 act downstream of the GA signal transduction pathway to regulate leaf development
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	vegetative	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Here, we reported the characterization of the rice leafy-head2 (lhd2) mutant that exhibits shortened plastochron, dwarfism, reduced tiller number, and failure of phase transition from vegetative to reproductive growth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	dwarf	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Here, we reported the characterization of the rice leafy-head2 (lhd2) mutant that exhibits shortened plastochron, dwarfism, reduced tiller number, and failure of phase transition from vegetative to reproductive growth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	pla3 exhibits similar phenotypes to pla1 and pla2- a shortened plastochron, precocious leaf maturation and rachis branch-to-shoot conversion in the reproductive phase
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	However, in contrast to pla1 and pla2, pla3 showed pleiotropic phenotypes including enlarged embryo, seed vivipary, defects in SAM maintenance and aberrant leaf morphology
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	GA induced PLA1 and PLA2 expression, and conversely the GA-inhibitor uniconazole suppressed PLA1 and PLA2 expression
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	In pla1-4 and pla2-1 seedlings, expression levels of GA biosynthesis genes and the signal transduction gene were similar to those in wild-type seedlings
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	GA treatment slightly down-regulated the GA biosynthesis gene GA20ox2 and up-regulated the GA-catabolizing gene GA2ox4, whereas the GA biosynthesis inhibitor uniconazole up-regulated GA20ox2 and down-regulated GA2ox4 both in wild-type and pla mutants, suggesting that the GA feedback mechanism is not impaired in pla1 and pla2
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	To reveal how GA signal transduction affects the expression of PLA1 and PLA2, PLA expression in GA-signaling mutants was examined
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	ga	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	These results indicate that both PLA1 and PLA2 act downstream of the GA signal transduction pathway to regulate leaf development
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	growth	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Here, we reported the characterization of the rice leafy-head2 (lhd2) mutant that exhibits shortened plastochron, dwarfism, reduced tiller number, and failure of phase transition from vegetative to reproductive growth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	growth	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Anatomical and histological study revealed that the rapid emergence of leaves in lhd2 was resulted from the rapid initiation of leaf primordia whereas the reduced tiller number was a consequence of the suppression of the tiller bud outgrowth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	seedling	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	In pla1-4 and pla2-1 seedlings, expression levels of GA biosynthesis genes and the signal transduction gene were similar to those in wild-type seedlings
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	phytohormone	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	Here, we investigated how PLA1 and PLA2 genes are related to phytohormones
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	phytohormone	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	We found that gibberellin (GA) is the major phytohormone that promotes PLA1 and PLA2 expression
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	reproductive	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	pla3 exhibits similar phenotypes to pla1 and pla2- a shortened plastochron, precocious leaf maturation and rachis branch-to-shoot conversion in the reproductive phase
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	reproductive	PLASTOCHRON2 Regulates Leaf Initiation and Maturation in Rice	Here, we present a detailed analysis of plastochron2 (pla2), a rice (Oryza sativa) mutant that exhibits shortened plastochron and precocious maturation of leaves during the vegetative phase and ectopic shoot formation during the reproductive phase
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	shoot	PLASTOCHRON2 Regulates Leaf Initiation and Maturation in Rice	Here, we present a detailed analysis of plastochron2 (pla2), a rice (Oryza sativa) mutant that exhibits shortened plastochron and precocious maturation of leaves during the vegetative phase and ectopic shoot formation during the reproductive phase
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	reproductive	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Here, we reported the characterization of the rice leafy-head2 (lhd2) mutant that exhibits shortened plastochron, dwarfism, reduced tiller number, and failure of phase transition from vegetative to reproductive growth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	tiller number	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Here, we reported the characterization of the rice leafy-head2 (lhd2) mutant that exhibits shortened plastochron, dwarfism, reduced tiller number, and failure of phase transition from vegetative to reproductive growth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	tiller number	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Anatomical and histological study revealed that the rapid emergence of leaves in lhd2 was resulted from the rapid initiation of leaf primordia whereas the reduced tiller number was a consequence of the suppression of the tiller bud outgrowth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf	PLASTOCHRON2 Regulates Leaf Initiation and Maturation in Rice	PLA2 is expressed predominantly in young leaf primordia
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf	PLASTOCHRON2 Regulates Leaf Initiation and Maturation in Rice	We show that PLA2 normally acts to retard the rate of leaf maturation but does so independently of PLA1, which encodes a member of the P450 family
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	tiller	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Here, we reported the characterization of the rice leafy-head2 (lhd2) mutant that exhibits shortened plastochron, dwarfism, reduced tiller number, and failure of phase transition from vegetative to reproductive growth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	tiller	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Anatomical and histological study revealed that the rapid emergence of leaves in lhd2 was resulted from the rapid initiation of leaf primordia whereas the reduced tiller number was a consequence of the suppression of the tiller bud outgrowth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Here, we reported the characterization of the rice leafy-head2 (lhd2) mutant that exhibits shortened plastochron, dwarfism, reduced tiller number, and failure of phase transition from vegetative to reproductive growth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Anatomical and histological study revealed that the rapid emergence of leaves in lhd2 was resulted from the rapid initiation of leaf primordia whereas the reduced tiller number was a consequence of the suppression of the tiller bud outgrowth
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	leaf	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	The similar phenotypes caused by LHD2 mutation and the conserved expression pattern of LHD2 indicated a conserved mechanism in controlling the temporal leaf initiation in grass
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	shoot	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	pla3 exhibits similar phenotypes to pla1 and pla2- a shortened plastochron, precocious leaf maturation and rachis branch-to-shoot conversion in the reproductive phase
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	shoot	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice	Comparison of genome-scale expression profiles between wild-type and lhd2 plants suggested that LHD2 may regulate rice shoot development through KNOX and hormone-related genes
PLA2|LHD2	Os01g0907900	LOC_Os01g68000	seed	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	However, in contrast to pla1 and pla2, pla3 showed pleiotropic phenotypes including enlarged embryo, seed vivipary, defects in SAM maintenance and aberrant leaf morphology
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	seed	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	However, in contrast to pla1 and pla2, pla3 showed pleiotropic phenotypes including enlarged embryo, seed vivipary, defects in SAM maintenance and aberrant leaf morphology
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	homeostasis	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	Consistent with these pleiotropic phenotypes, PLA3 is expressed in the whole plant body, and is involved in plant hormone homeostasis
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	leaf	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	Here we report the identification of the rice gene PLASTOCHRON3 (PLA3)/GOLIATH (GO) that regulates various developmental processes including the rate of leaf initiation (the plastochron)
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	leaf	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	pla3 exhibits similar phenotypes to pla1 and pla2- a shortened plastochron, precocious leaf maturation and rachis branch-to-shoot conversion in the reproductive phase
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	leaf	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	However, in contrast to pla1 and pla2, pla3 showed pleiotropic phenotypes including enlarged embryo, seed vivipary, defects in SAM maintenance and aberrant leaf morphology
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	shoot	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	pla3 exhibits similar phenotypes to pla1 and pla2- a shortened plastochron, precocious leaf maturation and rachis branch-to-shoot conversion in the reproductive phase
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	reproductive	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	pla3 exhibits similar phenotypes to pla1 and pla2- a shortened plastochron, precocious leaf maturation and rachis branch-to-shoot conversion in the reproductive phase
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	leaf	OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.	Microscopy of flag leaf cross-sections indicated that overexpression of OsLBD3-7 led to a decrease in both bulliform cell size and number
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	leaf	OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.	These results indicated that OsLBD3-7 might acts as an upstream regulatory gene of bulliform cell development to regulate leaf rolling, which will give more insights on the leaf rolling regulation mechanism
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	development	OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.	These results indicated that OsLBD3-7 might acts as an upstream regulatory gene of bulliform cell development to regulate leaf rolling, which will give more insights on the leaf rolling regulation mechanism
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	nucleus	OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.	OsLBD3-7 works as a transcription activator and its protein is located on the plasma membrane and in the nucleus
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	plasma membrane	OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.	OsLBD3-7 works as a transcription activator and its protein is located on the plasma membrane and in the nucleus
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	transcription activator	OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.	OsLBD3-7 works as a transcription activator and its protein is located on the plasma membrane and in the nucleus
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	leaf rolling	OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.	These results indicated that OsLBD3-7 might acts as an upstream regulatory gene of bulliform cell development to regulate leaf rolling, which will give more insights on the leaf rolling regulation mechanism
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	yield	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Overexpression of OsLBD37 and OsLBD38 separately causes delayed heading date and increased yield
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	yield	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	These data indicates that OsLBD37 and OsLBD38, may function as novel regulators of heading date and crop yield in rice
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	R protein	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Both OsLBD37 and OsLBD38 are expressed in rhythmic pattern, and their proteins are localized in the nucleus
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	heading date	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	heading date	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Overexpression of OsLBD37 and OsLBD38 separately causes delayed heading date and increased yield
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	heading date	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Further analysis revealed that OsLBD37 and OsLBD38 delayed heading date by down-regulating the expression of the florigen genes Hd3a and RFT1 through key regulator of heading date Ehd1
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	heading date	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	These data indicates that OsLBD37 and OsLBD38, may function as novel regulators of heading date and crop yield in rice
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	nucleus	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Both OsLBD37 and OsLBD38 are expressed in rhythmic pattern, and their proteins are localized in the nucleus
PLA3|OsLBD3-7|OsLBD37	Os03g0790600	LOC_Os03g57660|LOC_Os03g57670	transcriptional activator	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	OsLBD37 and OsLBD38 are two class II type LBD proteins, function as transcriptional activators
PLS2	Os03g0265100	LOC_Os03g15840	leaf	Rice Premature Leaf Senescence 2, Encoding a Glycosyltransferase (GT), Is Involved in Leaf Senescence.	PLS2 expression was detected in all tissues surveyed, but predominantly in leaf mesophyll cells
PLS2	Os03g0265100	LOC_Os03g15840	leaf	Rice Premature Leaf Senescence 2, Encoding a Glycosyltransferase (GT), Is Involved in Leaf Senescence.	These data suggested that the PLS2 allele is essential for normal leaf senescence and its mutation resulted in PLS
PLS2	Os03g0265100	LOC_Os03g15840	leaf senescence	Rice Premature Leaf Senescence 2, Encoding a Glycosyltransferase (GT), Is Involved in Leaf Senescence.	These data suggested that the PLS2 allele is essential for normal leaf senescence and its mutation resulted in PLS
PLS2	Os03g0265100	LOC_Os03g15840	senescence	Rice Premature Leaf Senescence 2, Encoding a Glycosyltransferase (GT), Is Involved in Leaf Senescence.	These data suggested that the PLS2 allele is essential for normal leaf senescence and its mutation resulted in PLS
PLS2	Os03g0265100	LOC_Os03g15840	sucrose	Rice Premature Leaf Senescence 2, Encoding a Glycosyltransferase (GT), Is Involved in Leaf Senescence.	The pls2 mutant accumulated higher levels of sucrose together with decreased expression of sucrose metabolizing genes compared with wild type
PME40	Os07g0675100	LOC_Os07g47830	flower	Methylesterification of cell-wall pectin controls the diurnal flower-opening times in rice.	 Knockout of PME40 also resulted in early diurnal flower opening, whereas overexpression of PME42 delayed diurnal flower opening
PME42	Os01g0312500	LOC_Os01g21034	flower	Methylesterification of cell-wall pectin controls the diurnal flower-opening times in rice.	 Knockout of PME40 also resulted in early diurnal flower opening, whereas overexpression of PME42 delayed diurnal flower opening
PMR	None	LOC_Os05g34780	pollen	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.
PMR	None	LOC_Os05g34780	pollen	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	When PMR gene was suppressed via RNAi, the mitosis of microspore was severely damaged, and the plants formed unmatured pollens containing only one or two nucleuses at the anthesis, ultimately leading to serious reduction of pollen fertility and seed-setting
PMR	None	LOC_Os05g34780	pollen	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	We finally discussed that unknown protein PMR contained the PHD, SWIB and Plus-3 domains and they might have coordinating functions in regulation pathway of the pollen mitosis in rice
PMR	None	LOC_Os05g34780	development	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.
PMR	None	LOC_Os05g34780	development	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	Phenotype identification, expression examination, and function prediction declared that the anther-preferential expressing gene PMR may participate in regulation of male gametophyte development in rice
PMR	None	LOC_Os05g34780	cell cycle	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	Further analysis revealed that PMR together with its co-expressing genes were liable to participate in the regulation of DNA metabolism in the nucleus, and affected the activities of some enzymes related to the cell cycle
PMR	None	LOC_Os05g34780	mitosis	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.
PMR	None	LOC_Os05g34780	mitosis	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	Here, we reported an anther-preferential expressing gene in rice, PMR (Pollen Mitosis Relative), playing an essential role in male gametogenesis
PMR	None	LOC_Os05g34780	mitosis	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	When PMR gene was suppressed via RNAi, the mitosis of microspore was severely damaged, and the plants formed unmatured pollens containing only one or two nucleuses at the anthesis, ultimately leading to serious reduction of pollen fertility and seed-setting
PMR	None	LOC_Os05g34780	mitosis	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	We finally discussed that unknown protein PMR contained the PHD, SWIB and Plus-3 domains and they might have coordinating functions in regulation pathway of the pollen mitosis in rice
PMR	None	LOC_Os05g34780	fertility	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	When PMR gene was suppressed via RNAi, the mitosis of microspore was severely damaged, and the plants formed unmatured pollens containing only one or two nucleuses at the anthesis, ultimately leading to serious reduction of pollen fertility and seed-setting
PMR	None	LOC_Os05g34780	microspore	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	When PMR gene was suppressed via RNAi, the mitosis of microspore was severely damaged, and the plants formed unmatured pollens containing only one or two nucleuses at the anthesis, ultimately leading to serious reduction of pollen fertility and seed-setting
PMR	None	LOC_Os05g34780	pollen development	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.
PMS1T	None	None	fertility	PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice.	A single nucleotide polymorphism in PMS1T nearby the miR2118 recognition site was critical for fertility change, likely leading to differential accumulation of the phasiRNAs
pms3	None	None	sterility	Localization of pms3, a gene for photoperiod-sensitive genic male sterility, to a 28.4-kb DNA fragment	Localization of pms3, a gene for photoperiod-sensitive genic male sterility, to a 28.4-kb DNA fragment
pms3	None	None	sterile	Localization of pms3, a gene for photoperiod-sensitive genic male sterility, to a 28.4-kb DNA fragment	By analyzing recombination events in the sterile individuals using a total of 157 RFLP probes from a BAC contig covering the pms3 region, the pms3 locus was localized to a sub-region of less than 1
PNZIP|OsCRD1|YL-1|YGL8	Os01g0279100	LOC_Os01g17170	flower	Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice	1 region were associated with the presence of one or more flowering time genes (GI, SOC1, FT-L8, EMF1, and PNZIP)
PNZIP|OsCRD1|YL-1|YGL8	Os01g0279100	LOC_Os01g17170	flower	Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice	Under short-day lengths, lines with introgressions carrying combinations of linked flowering time genes (GI/SOC1, SOC1/FT-L8, GI/SOC1/FT-L8 and EMF1/PNZIP) from the late parent, O
PNZIP|OsCRD1|YL-1|YGL8	Os01g0279100	LOC_Os01g17170	flower	Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice	rufipogon, flowered earlier than the recurrent parent, Jefferson, while recombinant lines carrying smaller introgressions marked by the presence of GI, SOC1, EMF1 or PNZIP alone no longer flowered early
PNZIP|OsCRD1|YL-1|YGL8	Os01g0279100	LOC_Os01g17170	flower	Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice	Under long-day length, lines carrying SOC1/FT-L8, SOC1 or PNZIP flowered early, while those carrying GI or EMF1 delayed flowering
PNZIP|OsCRD1|YL-1|YGL8	Os01g0279100	LOC_Os01g17170	flowering time	Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice	1 region were associated with the presence of one or more flowering time genes (GI, SOC1, FT-L8, EMF1, and PNZIP)
PNZIP|OsCRD1|YL-1|YGL8	Os01g0279100	LOC_Os01g17170	flowering time	Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice	Under short-day lengths, lines with introgressions carrying combinations of linked flowering time genes (GI/SOC1, SOC1/FT-L8, GI/SOC1/FT-L8 and EMF1/PNZIP) from the late parent, O
PNZIP|OsCRD1|YL-1|YGL8	Os01g0279100	LOC_Os01g17170	map-based cloning	Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).	Map-based cloning and over-expression analysis suggested that YL-1 encodes a subunit of MPEC
PNZIP|OsCRD1|YL-1|YGL8	Os01g0279100	LOC_Os01g17170	Chl biosynthesis	Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).	Results of qRT-PCR showed that Chl biosynthesis upstream genes were highly expressed in the yl-1 mutant, while downstream genes were compromised, indicating that YL-1 plays a pivotal role in the Chl biosynthesis
POXGX9|prx112	Os07g0677300	LOC_Os07g48030	root	Differential induction of a peroxidase gene family during infection of rice by Xanthomonas oryzae pv. oryzae	Interestingly, POXgX9 was expressed only in the roots of rice plants
PPR756	Os12g0289800	LOC_Os12g19260	growth	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.	The knock-out plants of PPR756 exhibited retarded growth and greener leaves during the early vegetative stages, along with sterile pollen and lower seed setting at the reproductive stage
PPR756	Os12g0289800	LOC_Os12g19260	development	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.
PPR756	Os12g0289800	LOC_Os12g19260	pollen	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.
PPR756	Os12g0289800	LOC_Os12g19260	pollen	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.	The knock-out plants of PPR756 exhibited retarded growth and greener leaves during the early vegetative stages, along with sterile pollen and lower seed setting at the reproductive stage
PPR756	Os12g0289800	LOC_Os12g19260	seed	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.	The knock-out plants of PPR756 exhibited retarded growth and greener leaves during the early vegetative stages, along with sterile pollen and lower seed setting at the reproductive stage
PPR756	Os12g0289800	LOC_Os12g19260	vegetative	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.	The knock-out plants of PPR756 exhibited retarded growth and greener leaves during the early vegetative stages, along with sterile pollen and lower seed setting at the reproductive stage
PPR756	Os12g0289800	LOC_Os12g19260	reproductive	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.	The knock-out plants of PPR756 exhibited retarded growth and greener leaves during the early vegetative stages, along with sterile pollen and lower seed setting at the reproductive stage
PPR756	Os12g0289800	LOC_Os12g19260	sterile	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.	The knock-out plants of PPR756 exhibited retarded growth and greener leaves during the early vegetative stages, along with sterile pollen and lower seed setting at the reproductive stage
PPR756	Os12g0289800	LOC_Os12g19260	pollen development	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in Pollen Development by Affecting Multiple RNA Editing in Mitochondria.
PPS1	Os12g0552300	LOC_Os12g36620	pollen	Rice PPS1 encodes a DYW motif-containing pentatricopeptide repeat protein required for five consecutive RNA-editing sites of nad3 in mitochondria.	Both pps1 RNAi and heterozygous plants are characterized by delayed development and partial pollen sterility at vegetative stages and reproductive stage
PPS1	Os12g0552300	LOC_Os12g36620	sterility	Rice PPS1 encodes a DYW motif-containing pentatricopeptide repeat protein required for five consecutive RNA-editing sites of nad3 in mitochondria.	Both pps1 RNAi and heterozygous plants are characterized by delayed development and partial pollen sterility at vegetative stages and reproductive stage
PPS1	Os12g0552300	LOC_Os12g36620	development	Rice PPS1 encodes a DYW motif-containing pentatricopeptide repeat protein required for five consecutive RNA-editing sites of nad3 in mitochondria.	Both pps1 RNAi and heterozygous plants are characterized by delayed development and partial pollen sterility at vegetative stages and reproductive stage
PPS1	Os12g0552300	LOC_Os12g36620	vegetative	Rice PPS1 encodes a DYW motif-containing pentatricopeptide repeat protein required for five consecutive RNA-editing sites of nad3 in mitochondria.	Both pps1 RNAi and heterozygous plants are characterized by delayed development and partial pollen sterility at vegetative stages and reproductive stage
PPS1	Os12g0552300	LOC_Os12g36620	reproductive	Rice PPS1 encodes a DYW motif-containing pentatricopeptide repeat protein required for five consecutive RNA-editing sites of nad3 in mitochondria.	Both pps1 RNAi and heterozygous plants are characterized by delayed development and partial pollen sterility at vegetative stages and reproductive stage
PPS1	Os12g0552300	LOC_Os12g36620	growth	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In our recent study, we found that the knockout of rice PPS1 causes pleiotropic growth disorders, including growth retardation, dwarf and sterile pollen, and finally leads to impaired C-U RNA editing at five consecutive sites on the mitochondrial nad3
PPS1	Os12g0552300	LOC_Os12g36620	salinity	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In this study, we further investigate the roles of PPS1 in abiotic stress tolerance, we confirmed that pss1-RNAi line exhibited enhanced sensitivity to salinity and ABA stress at vegetative stage, specifically
PPS1	Os12g0552300	LOC_Os12g36620	abiotic stress	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS
PPS1	Os12g0552300	LOC_Os12g36620	abiotic stress	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In this study, we further investigate the roles of PPS1 in abiotic stress tolerance, we confirmed that pss1-RNAi line exhibited enhanced sensitivity to salinity and ABA stress at vegetative stage, specifically
PPS1	Os12g0552300	LOC_Os12g36620	abiotic stress	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	These results implied that PPS1 functioned on ROS signaling network to contribute for the flexibility to abiotic stresses
PPS1	Os12g0552300	LOC_Os12g36620	ABA	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In this study, we further investigate the roles of PPS1 in abiotic stress tolerance, we confirmed that pss1-RNAi line exhibited enhanced sensitivity to salinity and ABA stress at vegetative stage, specifically
PPS1	Os12g0552300	LOC_Os12g36620	vegetative	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In this study, we further investigate the roles of PPS1 in abiotic stress tolerance, we confirmed that pss1-RNAi line exhibited enhanced sensitivity to salinity and ABA stress at vegetative stage, specifically
PPS1	Os12g0552300	LOC_Os12g36620	stress	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS
PPS1	Os12g0552300	LOC_Os12g36620	stress	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In this study, we further investigate the roles of PPS1 in abiotic stress tolerance, we confirmed that pss1-RNAi line exhibited enhanced sensitivity to salinity and ABA stress at vegetative stage, specifically
PPS1	Os12g0552300	LOC_Os12g36620	biotic stress	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS
PPS1	Os12g0552300	LOC_Os12g36620	biotic stress	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In this study, we further investigate the roles of PPS1 in abiotic stress tolerance, we confirmed that pss1-RNAi line exhibited enhanced sensitivity to salinity and ABA stress at vegetative stage, specifically
PPS1	Os12g0552300	LOC_Os12g36620	biotic stress	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	These results implied that PPS1 functioned on ROS signaling network to contribute for the flexibility to abiotic stresses
PPS1	Os12g0552300	LOC_Os12g36620	dwarf	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In our recent study, we found that the knockout of rice PPS1 causes pleiotropic growth disorders, including growth retardation, dwarf and sterile pollen, and finally leads to impaired C-U RNA editing at five consecutive sites on the mitochondrial nad3
PPS1	Os12g0552300	LOC_Os12g36620	sterile	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In our recent study, we found that the knockout of rice PPS1 causes pleiotropic growth disorders, including growth retardation, dwarf and sterile pollen, and finally leads to impaired C-U RNA editing at five consecutive sites on the mitochondrial nad3
PPS1	Os12g0552300	LOC_Os12g36620	ABA	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In this study, we further investigate the roles of PPS1 in abiotic stress tolerance, we confirmed that pss1-RNAi line exhibited enhanced sensitivity to salinity and ABA stress at vegetative stage, specifically
PPS1	Os12g0552300	LOC_Os12g36620	stress tolerance	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS	In this study, we further investigate the roles of PPS1 in abiotic stress tolerance, we confirmed that pss1-RNAi line exhibited enhanced sensitivity to salinity and ABA stress at vegetative stage, specifically
prog1	Os07g0153600	LOC_Os07g05900	meristem	Genetic control of rice plant architecture under domestication	PROG1 is predominantly expressed in the axillary meristems, the site of tiller bud formation
prog1	Os07g0153600	LOC_Os07g05900	domestication	Control of a key transition from prostrate to erect growth in rice domestication	Sequence comparison shows that 182 varieties of cultivated rice, including 87 indica and 95 japonica cultivars from 17 countries, carry identical mutations in the prog1 coding region that may have become fixed during rice domestication
prog1	Os07g0153600	LOC_Os07g05900	domestication	Genetic control of rice plant architecture under domestication	Rice transformation experiments demonstrate that artificial selection of an amino acid substitution in the PROG1 protein during domestication led to the transition from the plant architecture of wild rice to that of domesticated rice
prog1	Os07g0153600	LOC_Os07g05900	tiller	Genetic control of rice plant architecture under domestication	Here we show that the PROG1 gene controls aspects of wild-rice plant architecture, including tiller angle and number of tillers
prog1	Os07g0153600	LOC_Os07g05900	tiller	Genetic control of rice plant architecture under domestication	PROG1 is predominantly expressed in the axillary meristems, the site of tiller bud formation
prog1	Os07g0153600	LOC_Os07g05900	growth	Control of a key transition from prostrate to erect growth in rice domestication	Here we find that prostrate growth of wild rice from Yuanjiang County in China is controlled by a semi-dominant gene, PROG1 (PROSTRATE GROWTH 1), on chromosome 7 that encodes a single Cys(2)-His(2) zinc-finger protein
prog1	Os07g0153600	LOC_Os07g05900	growth	Control of a key transition from prostrate to erect growth in rice domestication	sativa disrupt the prog1 function and inactivate prog1 expression, leading to erect growth, greater grain number and higher grain yield in cultivated rice
prog1	Os07g0153600	LOC_Os07g05900	grain	Control of a key transition from prostrate to erect growth in rice domestication	sativa disrupt the prog1 function and inactivate prog1 expression, leading to erect growth, greater grain number and higher grain yield in cultivated rice
prog1	Os07g0153600	LOC_Os07g05900	tiller angle	Genetic control of rice plant architecture under domestication	Here we show that the PROG1 gene controls aspects of wild-rice plant architecture, including tiller angle and number of tillers
prog1	Os07g0153600	LOC_Os07g05900	erect	Control of a key transition from prostrate to erect growth in rice domestication	sativa disrupt the prog1 function and inactivate prog1 expression, leading to erect growth, greater grain number and higher grain yield in cultivated rice
prog1	Os07g0153600	LOC_Os07g05900	grain yield	Control of a key transition from prostrate to erect growth in rice domestication	sativa disrupt the prog1 function and inactivate prog1 expression, leading to erect growth, greater grain number and higher grain yield in cultivated rice
prog1	Os07g0153600	LOC_Os07g05900	axillary meristem	Genetic control of rice plant architecture under domestication	PROG1 is predominantly expressed in the axillary meristems, the site of tiller bud formation
prog1	Os07g0153600	LOC_Os07g05900	prostrate	Control of a key transition from prostrate to erect growth in rice domestication	Here we find that prostrate growth of wild rice from Yuanjiang County in China is controlled by a semi-dominant gene, PROG1 (PROSTRATE GROWTH 1), on chromosome 7 that encodes a single Cys(2)-His(2) zinc-finger protein
prog1	Os07g0153600	LOC_Os07g05900	yield	Control of a key transition from prostrate to erect growth in rice domestication	sativa disrupt the prog1 function and inactivate prog1 expression, leading to erect growth, greater grain number and higher grain yield in cultivated rice
prog1	Os07g0153600	LOC_Os07g05900	grain number	Control of a key transition from prostrate to erect growth in rice domestication	sativa disrupt the prog1 function and inactivate prog1 expression, leading to erect growth, greater grain number and higher grain yield in cultivated rice
prog1	Os07g0153600	LOC_Os07g05900	architecture	Genetic control of rice plant architecture under domestication	Here we show that the PROG1 gene controls aspects of wild-rice plant architecture, including tiller angle and number of tillers
prog1	Os07g0153600	LOC_Os07g05900	architecture	Genetic control of rice plant architecture under domestication	Rice transformation experiments demonstrate that artificial selection of an amino acid substitution in the PROG1 protein during domestication led to the transition from the plant architecture of wild rice to that of domesticated rice
prog1	Os07g0153600	LOC_Os07g05900	growth	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	Analysis of the stepwise origination process of PROG1 and its evolutionary genetics revealed that this zinc-finger coding gene may have rapidly evolved under positive selection and promoted the transition from non- or semi-prostrate growth to prostrate growth
prog1	Os07g0153600	LOC_Os07g05900	domestication	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	This study showed that an open reading frame (ORF) of the rice domestication gene PROG1 appeared 3
prog1	Os07g0153600	LOC_Os07g05900	domestication	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	However, selection for dense planting and high yield during rice domestication silenced the PROG1 gene and caused the loss of the RPAD locus containing functional C2H2 paralogs; hence, domesticated lines exhibit an erect plant architecture
prog1	Os07g0153600	LOC_Os07g05900	yield	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	However, selection for dense planting and high yield during rice domestication silenced the PROG1 gene and caused the loss of the RPAD locus containing functional C2H2 paralogs; hence, domesticated lines exhibit an erect plant architecture
prog1	Os07g0153600	LOC_Os07g05900	architecture	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus
prog1	Os07g0153600	LOC_Os07g05900	architecture	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	However, selection for dense planting and high yield during rice domestication silenced the PROG1 gene and caused the loss of the RPAD locus containing functional C2H2 paralogs; hence, domesticated lines exhibit an erect plant architecture
prog1	Os07g0153600	LOC_Os07g05900	erect	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	However, selection for dense planting and high yield during rice domestication silenced the PROG1 gene and caused the loss of the RPAD locus containing functional C2H2 paralogs; hence, domesticated lines exhibit an erect plant architecture
prog1	Os07g0153600	LOC_Os07g05900	plant architecture	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus
prog1	Os07g0153600	LOC_Os07g05900	plant architecture	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	However, selection for dense planting and high yield during rice domestication silenced the PROG1 gene and caused the loss of the RPAD locus containing functional C2H2 paralogs; hence, domesticated lines exhibit an erect plant architecture
prog1	Os07g0153600	LOC_Os07g05900	prostrate	Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus	Analysis of the stepwise origination process of PROG1 and its evolutionary genetics revealed that this zinc-finger coding gene may have rapidly evolved under positive selection and promoted the transition from non- or semi-prostrate growth to prostrate growth
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	temperature	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	OsRH42 expression is tightly coupled to temperature fluctuation, and OsRH42 is localized in the splicing speckles and interacts directly with U2 snRNA
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	temperature	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	Retarded pre-mRNA splicing and plant growth defects were exhibited by OsRH42-knockdown transgenic lines at low temperatures, thus indicating that OsRH42 performs an essential role in ensuring accurate pre-mRNA splicing and normal plant growth under low ambient temperature
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	temperature	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	Combined, these results indicate that accurate control of OsRH42 homeostasis is essential for rice plants to respond to changes in ambient temperature
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	growth	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	Retarded pre-mRNA splicing and plant growth defects were exhibited by OsRH42-knockdown transgenic lines at low temperatures, thus indicating that OsRH42 performs an essential role in ensuring accurate pre-mRNA splicing and normal plant growth under low ambient temperature
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	growth	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	Unexpectedly, our results show that OsRH42 overexpression significantly disrupts the pre-mRNA splicing pathway, causing retarded plant growth and reducing plant cold tolerance
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	tolerance	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	Unexpectedly, our results show that OsRH42 overexpression significantly disrupts the pre-mRNA splicing pathway, causing retarded plant growth and reducing plant cold tolerance
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	cold tolerance	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	Unexpectedly, our results show that OsRH42 overexpression significantly disrupts the pre-mRNA splicing pathway, causing retarded plant growth and reducing plant cold tolerance
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	plant growth	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	Retarded pre-mRNA splicing and plant growth defects were exhibited by OsRH42-knockdown transgenic lines at low temperatures, thus indicating that OsRH42 performs an essential role in ensuring accurate pre-mRNA splicing and normal plant growth under low ambient temperature
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	plant growth	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	Unexpectedly, our results show that OsRH42 overexpression significantly disrupts the pre-mRNA splicing pathway, causing retarded plant growth and reducing plant cold tolerance
PRP5|OsRH42	Os08g0159900	LOC_Os08g06344	homeostasis	DEAD-box RNA helicase 42 plays a critical role in pre-mRNA splicing under cold stress.	Combined, these results indicate that accurate control of OsRH42 homeostasis is essential for rice plants to respond to changes in ambient temperature
PRPL12	Os01g0662300	LOC_Os01g47330	chloroplast	A residue substitution in the plastid ribosomal protein L12/AL1 produces defective plastid ribosome and causes early seedling lethality in rice	The PRPL12 protein contains putative EF-G and EF-Tu interaction sites to recruit and bind elongation factors for elongation of the peptide chain (Supplementary Fig. S10; Diaconu et al. 2005; Mandava et al. 2012), suggesting its essential role in chloroplast translation.
PSD	Os07g0613300	LOC_Os07g42180	leaf	Expression and characterization of rice putativePAUSEDgene	Examining intronless tRNA-Tyr and intron-containing pre-tRNA-Ala expression levels in cytoplasmic and nuclear fraction with Northern blot analysis between wild-type and mutant leaf tissue suggested that rice PSD might be involved in tRNA export from the nucleus to the cytoplasm
PSD	Os07g0613300	LOC_Os07g42180	fertility	Expression and characterization of rice putativePAUSEDgene	In this study, we verified a rice transfer-DNAinsertional mutant psd line and analyzed its phenotypes; the mutant displayed severe morphological defects including retarded development and low fertility compared with wild-type rice
Psd1|Ptd1	Os01g0822900	LOC_Os01g60740	growth	Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.).	The Psd1 mutant showed impaired cell division and elongation, and a severe dwarf phenotype under long-day conditions, but nearly normal growth in short-day
Psd1|Ptd1	Os01g0822900	LOC_Os01g60740	gibberellin	Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.).	The plant height of Psd1 mutant could not be rescued by gibberellin or brassinosteroid treatment
Psd1|Ptd1	Os01g0822900	LOC_Os01g60740	cell division	Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.).	The Psd1 mutant showed impaired cell division and elongation, and a severe dwarf phenotype under long-day conditions, but nearly normal growth in short-day
Psd1|Ptd1	Os01g0822900	LOC_Os01g60740	dwarf	Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.).	The Psd1 mutant showed impaired cell division and elongation, and a severe dwarf phenotype under long-day conditions, but nearly normal growth in short-day
Psd1|Ptd1	Os01g0822900	LOC_Os01g60740	height	Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.).	The plant height of Psd1 mutant could not be rescued by gibberellin or brassinosteroid treatment
Psd1|Ptd1	Os01g0822900	LOC_Os01g60740	brassinosteroid	Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.).	The plant height of Psd1 mutant could not be rescued by gibberellin or brassinosteroid treatment
Psd1|Ptd1	Os01g0822900	LOC_Os01g60740	growth	A Lipid Transfer Protein Variant with a Mutant Eight-cysteine Motif Causes Photoperiod-thermo-sensitive Dwarfism in Rice.	Furthermore, we found that the growth inhibition in Ptd1 might result from the special protein conformation of Ptd1 due to loss of two disulfide bonds in the Eight-cysteine motif (8-CM) that is conserved among nsLTPs
PSH1|Rb2	Os01g0577300	LOC_Os01g39580	leaf	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.	Here, PSH1 (purple leaf sheath 1) was mapped to chromosome 1 using an F(2) and a RIL population
PSH1|Rb2	Os01g0577300	LOC_Os01g39580	sheath	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.	Here, PSH1 (purple leaf sheath 1) was mapped to chromosome 1 using an F(2) and a RIL population
PSH1|Rb2	Os01g0577300	LOC_Os01g39580	map-based cloning	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.	Map-based cloning and transformation assays further divided PSH1 as two tightly linked bHLH genes, Rb1 and Rb2
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	leaf	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	psl1 with a 260-bp deletion in its gene displayed leaf rolling in response to high light intensity and/or low humidity
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	development	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	Taken together, PSL1 functions as a PG that modifies cell wall biosynthesis, plant development and drought tolerance in rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	plant development	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	Taken together, PSL1 functions as a PG that modifies cell wall biosynthesis, plant development and drought tolerance in rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	drought	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	Taken together, PSL1 functions as a PG that modifies cell wall biosynthesis, plant development and drought tolerance in rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	tolerance	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	Taken together, PSL1 functions as a PG that modifies cell wall biosynthesis, plant development and drought tolerance in rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	drought tolerance	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	Taken together, PSL1 functions as a PG that modifies cell wall biosynthesis, plant development and drought tolerance in rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	cell wall	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	The PSL1 gene encodes a cell wall-localised polygalacturonase (PG), a pectin-degrading enzyme
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	cell wall	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	Significant modifications to cell wall composition in the psl1 mutant compared with the wild-type plants were identified
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	cell wall	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	Taken together, PSL1 functions as a PG that modifies cell wall biosynthesis, plant development and drought tolerance in rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	leaf rolling	PHOTO-SENSITIVE LEAF ROLLING 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice	psl1 with a 260-bp deletion in its gene displayed leaf rolling in response to high light intensity and/or low humidity
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	leaf	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice	Conclusion: These results demonstrate that OsPG1 encodes a PG in response to the leaf tip necrosis phenotype of ltn-212
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	resistance	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	blight	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	bacterial blight	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	pathogen	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	architecture	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice
PSL1|OsPG1	Os01g0296200	LOC_Os01g19170	cell wall	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice
PSR1|OsNiR	Os01g0357100	LOC_Os01g25484	nitrogen	Enhanced OsNLP4-OsNiR cascade confers nitrogen use efficiency by promoting tiller number in rice	We found that OsNLP4 transactivated OsNiR encoding nitrite reductase that was critical in nitrogen assimilation in rice
PSR1|OsNiR	Os01g0357100	LOC_Os01g25484	nitrogen	Enhanced OsNLP4-OsNiR cascade confers nitrogen use efficiency by promoting tiller number in rice	We further constructed quadrupling NREs (Nitrate-responsive cis-element) in the promoter of OsNiR (p4xNRE:OsNiR) and enhanced nitrogen assimilation significantly
PSRK2	Os01g0890100	LOC_Os01g66630	leaf	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	PSRK2 expression was also found to be induced by GA3, and PSRK2 was involved in GA signaling in cereal aleurone cells, and PSRK2 influence the relative length of the second leaf sheaths in seedling stage
PSRK2	Os01g0890100	LOC_Os01g66630	stem	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	These results indicate PSRK2 is a component of GA signaling pathway that controls stem elongation by negatively regulating GA responses
PSRK2	Os01g0890100	LOC_Os01g66630	seedling	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	PSRK2 expression was also found to be induced by GA3, and PSRK2 was involved in GA signaling in cereal aleurone cells, and PSRK2 influence the relative length of the second leaf sheaths in seedling stage
PSRK2	Os01g0890100	LOC_Os01g66630	cell division	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	Phenotype of the loss-of-function mutants, psrk2-DN and psrk2-RNAi, showed that PSRK2 could influence the length of the uppermost and fourth internodes, indicating that PSRK2 might regulate cell division in the intercalary meristems and/or cell elongation in the internodes
PSRK2	Os01g0890100	LOC_Os01g66630	reproductive	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	Moreover, the expression pattern showed that PSRK2 was strongly expressed in the joined-nodes after the start-up of reproductive growth, but undetectable in leaves
PSRK2	Os01g0890100	LOC_Os01g66630	ga	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	PSRK2 expression was also found to be induced by GA3, and PSRK2 was involved in GA signaling in cereal aleurone cells, and PSRK2 influence the relative length of the second leaf sheaths in seedling stage
PSRK2	Os01g0890100	LOC_Os01g66630	ga	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	These results indicate PSRK2 is a component of GA signaling pathway that controls stem elongation by negatively regulating GA responses
PSRK2	Os01g0890100	LOC_Os01g66630	cell elongation	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	Phenotype of the loss-of-function mutants, psrk2-DN and psrk2-RNAi, showed that PSRK2 could influence the length of the uppermost and fourth internodes, indicating that PSRK2 might regulate cell division in the intercalary meristems and/or cell elongation in the internodes
PSRK2	Os01g0890100	LOC_Os01g66630	GA	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	PSRK2 expression was also found to be induced by GA3, and PSRK2 was involved in GA signaling in cereal aleurone cells, and PSRK2 influence the relative length of the second leaf sheaths in seedling stage
PSRK2	Os01g0890100	LOC_Os01g66630	GA	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	These results indicate PSRK2 is a component of GA signaling pathway that controls stem elongation by negatively regulating GA responses
PSRK2	Os01g0890100	LOC_Os01g66630	intercalary meristem	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	Phenotype of the loss-of-function mutants, psrk2-DN and psrk2-RNAi, showed that PSRK2 could influence the length of the uppermost and fourth internodes, indicating that PSRK2 might regulate cell division in the intercalary meristems and/or cell elongation in the internodes
PSRK2	Os01g0890100	LOC_Os01g66630	reproductive growth	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	Moreover, the expression pattern showed that PSRK2 was strongly expressed in the joined-nodes after the start-up of reproductive growth, but undetectable in leaves
PSS1	Os08g0117000	LOC_Os08g02380	meiotic	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Together, our results suggest that PSS1 defines a novel member of the kinesin-1 family essential for male meiotic chromosomal dynamics, male gametogenesis, and anther dehiscence in rice
PSS1	Os08g0117000	LOC_Os08g02380	sterility	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.)	In this report, we found the female gamete of W207-2 was normal, and its semi-sterility was unaffected by growth duration but was conditioned by a recessive nuclear gene whose action leads to pollen semi-sterility and anther indehiscence, and the gene was named as pss1 (pollen semi-sterile)
PSS1	Os08g0117000	LOC_Os08g02380	pollen	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.)	In this report, we found the female gamete of W207-2 was normal, and its semi-sterility was unaffected by growth duration but was conditioned by a recessive nuclear gene whose action leads to pollen semi-sterility and anther indehiscence, and the gene was named as pss1 (pollen semi-sterile)
PSS1	Os08g0117000	LOC_Os08g02380	pollen	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.)	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.)
PSS1	Os08g0117000	LOC_Os08g02380	anther	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.)	In this report, we found the female gamete of W207-2 was normal, and its semi-sterility was unaffected by growth duration but was conditioned by a recessive nuclear gene whose action leads to pollen semi-sterility and anther indehiscence, and the gene was named as pss1 (pollen semi-sterile)
PSS1	Os08g0117000	LOC_Os08g02380	sterile	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.)	In this report, we found the female gamete of W207-2 was normal, and its semi-sterility was unaffected by growth duration but was conditioned by a recessive nuclear gene whose action leads to pollen semi-sterility and anther indehiscence, and the gene was named as pss1 (pollen semi-sterile)
PSS1	Os08g0117000	LOC_Os08g02380	sterile	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.)	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.)
PSS1	Os08g0117000	LOC_Os08g02380	fertility	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Here, we describe a rice pollen semi-sterility1 (pss1) mutant, which displays reduced spikelet fertility (~40%) primarily caused by reduced pollen viability (~50% viable), and defective anther dehiscence
PSS1	Os08g0117000	LOC_Os08g02380	pollen	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Here, we describe a rice pollen semi-sterility1 (pss1) mutant, which displays reduced spikelet fertility (~40%) primarily caused by reduced pollen viability (~50% viable), and defective anther dehiscence
PSS1	Os08g0117000	LOC_Os08g02380	spikelet	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Here, we describe a rice pollen semi-sterility1 (pss1) mutant, which displays reduced spikelet fertility (~40%) primarily caused by reduced pollen viability (~50% viable), and defective anther dehiscence
PSS1	Os08g0117000	LOC_Os08g02380	anther development	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Furthermore, PSS1 expression is significantly upregulated during anther development and peaks during male meiosis
PSS1	Os08g0117000	LOC_Os08g02380	anther	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Here, we describe a rice pollen semi-sterility1 (pss1) mutant, which displays reduced spikelet fertility (~40%) primarily caused by reduced pollen viability (~50% viable), and defective anther dehiscence
PSS1	Os08g0117000	LOC_Os08g02380	anther	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Furthermore, PSS1 expression is significantly upregulated during anther development and peaks during male meiosis
PSS1	Os08g0117000	LOC_Os08g02380	anther	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Together, our results suggest that PSS1 defines a novel member of the kinesin-1 family essential for male meiotic chromosomal dynamics, male gametogenesis, and anther dehiscence in rice
PSS1	Os08g0117000	LOC_Os08g02380	sterility	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Here, we describe a rice pollen semi-sterility1 (pss1) mutant, which displays reduced spikelet fertility (~40%) primarily caused by reduced pollen viability (~50% viable), and defective anther dehiscence
PSS1	Os08g0117000	LOC_Os08g02380	growth	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.)	In this report, we found the female gamete of W207-2 was normal, and its semi-sterility was unaffected by growth duration but was conditioned by a recessive nuclear gene whose action leads to pollen semi-sterility and anther indehiscence, and the gene was named as pss1 (pollen semi-sterile)
PSS1	Os08g0117000	LOC_Os08g02380	meiosis	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Furthermore, PSS1 expression is significantly upregulated during anther development and peaks during male meiosis
PSS1	Os08g0117000	LOC_Os08g02380	meiosis	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	Consistent with this, lagging chromosomes and chromosomal bridges were found at anaphase I and anaphase II of male meiosis in the pss1 mutant
PSS1	Os08g0117000	LOC_Os08g02380	panicle	Pollen semi-sterility1 encodes a kinesin-1-like protein important for male meiosis, anther dehiscence, and fertility in rice	PSS1 is broadly expressed in various organs, with highest expression in panicles
PSTOL1	None	None	yield	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	Here we show that overexpression of PSTOL1 in such varieties significantly enhances grain yield in phosphorus-deficient soil
PSTOL1	None	None	root	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	Further analyses show that PSTOL1 acts as an enhancer of early root growth, thereby enabling plants to acquire more phosphorus and other nutrients
PSTOL1	None	None	phosphorus	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	However, its functional mechanism remained elusive until the locus was sequenced, showing the presence of a Pup1-specific protein kinase gene, which we have named phosphorus-starvation tolerance 1 (PSTOL1)
PSTOL1	None	None	phosphorus	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	Here we show that overexpression of PSTOL1 in such varieties significantly enhances grain yield in phosphorus-deficient soil
PSTOL1	None	None	phosphorus	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	Further analyses show that PSTOL1 acts as an enhancer of early root growth, thereby enabling plants to acquire more phosphorus and other nutrients
PSTOL1	None	None	phosphorus	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency
PSTOL1	None	None	grain	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	Here we show that overexpression of PSTOL1 in such varieties significantly enhances grain yield in phosphorus-deficient soil
PSTOL1	None	None	submergence	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	The absence of PSTOL1 and other genes-for example, the submergence-tolerance gene SUB1A-from modern rice varieties underlines the importance of conserving and exploring traditional germplasm
PSTOL1	None	None	growth	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	Further analyses show that PSTOL1 acts as an enhancer of early root growth, thereby enabling plants to acquire more phosphorus and other nutrients
PSTOL1	None	None	grain yield	The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency	Here we show that overexpression of PSTOL1 in such varieties significantly enhances grain yield in phosphorus-deficient soil
PSTOL1	None	None	tolerance	Phosphate acquisition efficiency and phosphate starvation tolerance locus (PSTOL1) in rice.	Neither the presence of PSTOL1 gene nor its closely-linked SSR RM1261, showed any association with P-deficiency tolerance among the 108 genotypes
PSTOL1	None	None	tolerance	Phosphate acquisition efficiency and phosphate starvation tolerance locus (PSTOL1) in rice.	Not only this, but the presence of PSTOL1 in recombinant inbred line (RIL) developed from a cross between Gobindabhog and Satabdi, also did not show any linkage with P-deficiency tolerance ability
PSTOL1	None	None	tolerance	Phosphate acquisition efficiency and phosphate starvation tolerance locus (PSTOL1) in rice.	Thus, before considering PSTOL1 gene in MAB, its expression and role in P-deficiency tolerance in the donor parent must be ascertained
PSTOL1	None	None	root	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.
PSTOL1	None	None	biomass	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.
PSTOL1	None	None	phosphorus	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.
PSTOL1	None	None	seedlings	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.
PSY1	Os06g0729000	LOC_Os06g51290	endosperm	Gene duplication in the carotenoid biosynthetic pathway preceded evolution of the grasses	We show that both maize and rice possess and express products from duplicate PSY genes, PSY1 (Y1) and PSY2; PSY1 transcript accumulation correlates with carotenoid-containing endosperm
PSY1	Os06g0729000	LOC_Os06g51290	abiotic stress	PSY3, a new member of the phytoene synthase gene family conserved in the Poaceae and regulator of abiotic stress-induced root carotenogenesis	PSY3 was the only paralog for which transcripts were induced in roots and abiotic stress also affected leaf PSY2 transcript levels; PSY1 mRNA was not elevated in any tissues tested
PSY1	Os06g0729000	LOC_Os06g51290	leaf	PSY3, a new member of the phytoene synthase gene family conserved in the Poaceae and regulator of abiotic stress-induced root carotenogenesis	PSY3 was the only paralog for which transcripts were induced in roots and abiotic stress also affected leaf PSY2 transcript levels; PSY1 mRNA was not elevated in any tissues tested
PSY1	Os06g0729000	LOC_Os06g51290	root	PSY3, a new member of the phytoene synthase gene family conserved in the Poaceae and regulator of abiotic stress-induced root carotenogenesis	PSY3 was the only paralog for which transcripts were induced in roots and abiotic stress also affected leaf PSY2 transcript levels; PSY1 mRNA was not elevated in any tissues tested
PSY2	Os12g0626400	LOC_Os12g43130	leaf	PSY3, a new member of the phytoene synthase gene family conserved in the Poaceae and regulator of abiotic stress-induced root carotenogenesis	PSY3 was the only paralog for which transcripts were induced in roots and abiotic stress also affected leaf PSY2 transcript levels; PSY1 mRNA was not elevated in any tissues tested
PSY2	Os12g0626400	LOC_Os12g43130	endosperm	Gene duplication in the carotenoid biosynthetic pathway preceded evolution of the grasses	We show that both maize and rice possess and express products from duplicate PSY genes, PSY1 (Y1) and PSY2; PSY1 transcript accumulation correlates with carotenoid-containing endosperm
PSY2	Os12g0626400	LOC_Os12g43130	abiotic stress	PSY3, a new member of the phytoene synthase gene family conserved in the Poaceae and regulator of abiotic stress-induced root carotenogenesis	PSY3 was the only paralog for which transcripts were induced in roots and abiotic stress also affected leaf PSY2 transcript levels; PSY1 mRNA was not elevated in any tissues tested
PSY2	Os12g0626400	LOC_Os12g43130	root	PSY3, a new member of the phytoene synthase gene family conserved in the Poaceae and regulator of abiotic stress-induced root carotenogenesis	PSY3 was the only paralog for which transcripts were induced in roots and abiotic stress also affected leaf PSY2 transcript levels; PSY1 mRNA was not elevated in any tissues tested
PTB1	Os05g0145000	LOC_Os05g05280	pollen	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Here we show that the domestication-related POLLEN TUBE BLOCKED 1 (PTB1), a RING-type E3 ubiquitin ligase, positively regulates the rice panicle seed setting rate by promoting pollen tube growth
PTB1	Os05g0145000	LOC_Os05g05280	pollen	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Our results support the hypothesis that PTB1 is an important maternal sporophytic factor of pollen tube growth and a key modulator of the rice panicle seed setting rate
PTB1	Os05g0145000	LOC_Os05g05280	pollen	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth
PTB1	Os05g0145000	LOC_Os05g05280	temperature	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	The natural variation in expression of PTB1 which is affected by the promoter haplotype and the environmental temperature, correlates with the rice panicle seed setting rate
PTB1	Os05g0145000	LOC_Os05g05280	panicle	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Here we show that the domestication-related POLLEN TUBE BLOCKED 1 (PTB1), a RING-type E3 ubiquitin ligase, positively regulates the rice panicle seed setting rate by promoting pollen tube growth
PTB1	Os05g0145000	LOC_Os05g05280	panicle	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	The natural variation in expression of PTB1 which is affected by the promoter haplotype and the environmental temperature, correlates with the rice panicle seed setting rate
PTB1	Os05g0145000	LOC_Os05g05280	panicle	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Our results support the hypothesis that PTB1 is an important maternal sporophytic factor of pollen tube growth and a key modulator of the rice panicle seed setting rate
PTB1	Os05g0145000	LOC_Os05g05280	seed	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Here we show that the domestication-related POLLEN TUBE BLOCKED 1 (PTB1), a RING-type E3 ubiquitin ligase, positively regulates the rice panicle seed setting rate by promoting pollen tube growth
PTB1	Os05g0145000	LOC_Os05g05280	seed	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	The natural variation in expression of PTB1 which is affected by the promoter haplotype and the environmental temperature, correlates with the rice panicle seed setting rate
PTB1	Os05g0145000	LOC_Os05g05280	seed	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Our results support the hypothesis that PTB1 is an important maternal sporophytic factor of pollen tube growth and a key modulator of the rice panicle seed setting rate
PTB1	Os05g0145000	LOC_Os05g05280	seed	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth
PTB1	Os05g0145000	LOC_Os05g05280	growth	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Here we show that the domestication-related POLLEN TUBE BLOCKED 1 (PTB1), a RING-type E3 ubiquitin ligase, positively regulates the rice panicle seed setting rate by promoting pollen tube growth
PTB1	Os05g0145000	LOC_Os05g05280	growth	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Our results support the hypothesis that PTB1 is an important maternal sporophytic factor of pollen tube growth and a key modulator of the rice panicle seed setting rate
PTB1	Os05g0145000	LOC_Os05g05280	growth	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth
PTB1	Os05g0145000	LOC_Os05g05280	domestication	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Here we show that the domestication-related POLLEN TUBE BLOCKED 1 (PTB1), a RING-type E3 ubiquitin ligase, positively regulates the rice panicle seed setting rate by promoting pollen tube growth
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	anther	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	PTC1 encodes a PHD-finger (for plant homeodomain) protein, which is expressed specifically in tapetal cells and microspores during anther development in stages 8 and 9, when the wild-type tapetal cells initiate a typical apoptosis-like cell death
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	anther	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Microarray analysis indicated that 2,417 tapetum- and microspore-expressed genes, which are principally associated with tapetal development, degeneration, and pollen wall formation, had changed expression in ptc1 anthers
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	anther	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Moreover, the regulatory role of PTC1 in anther development was revealed by comparison with MS1 and other rice anther developmental regulators
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	anther	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	These findings suggest a diversified and conserved switch of PTC1/MS1 in regulating programmed male reproductive development in both dicots and monocots, which provides new insights in plant anther development
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	sterility	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	The evolutionary significance of PTC1 was revealed by partial genetic complementation of the homologous mutation MALE STERILITY1 (MS1) in the dicot Arabidopsis (Arabidopsis thaliana)
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	cell death	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	PTC1 encodes a PHD-finger (for plant homeodomain) protein, which is expressed specifically in tapetal cells and microspores during anther development in stages 8 and 9, when the wild-type tapetal cells initiate a typical apoptosis-like cell death
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetal	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Here, we report a key regulator in monocot rice (Oryza sativa), PERSISTANT TAPETAL CELL1 (PTC1), which controls programmed tapetal development and functional pollen formation
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetal	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	PTC1 encodes a PHD-finger (for plant homeodomain) protein, which is expressed specifically in tapetal cells and microspores during anther development in stages 8 and 9, when the wild-type tapetal cells initiate a typical apoptosis-like cell death
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetal	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Even though ptc1 mutants show phenotypic similarity to ms1 in a lack of tapetal DNA fragmentation, delayed tapetal degeneration, as well as abnormal pollen wall formation and aborted microspore development, the ptc1 mutant displays a previously unreported phenotype of uncontrolled tapetal proliferation and subsequent commencement of necrosis-like tapetal death
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetal	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Microarray analysis indicated that 2,417 tapetum- and microspore-expressed genes, which are principally associated with tapetal development, degeneration, and pollen wall formation, had changed expression in ptc1 anthers
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Here, we report a key regulator in monocot rice (Oryza sativa), PERSISTANT TAPETAL CELL1 (PTC1), which controls programmed tapetal development and functional pollen formation
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Even though ptc1 mutants show phenotypic similarity to ms1 in a lack of tapetal DNA fragmentation, delayed tapetal degeneration, as well as abnormal pollen wall formation and aborted microspore development, the ptc1 mutant displays a previously unreported phenotype of uncontrolled tapetal proliferation and subsequent commencement of necrosis-like tapetal death
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Microarray analysis indicated that 2,417 tapetum- and microspore-expressed genes, which are principally associated with tapetal development, degeneration, and pollen wall formation, had changed expression in ptc1 anthers
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	microspore	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	PTC1 encodes a PHD-finger (for plant homeodomain) protein, which is expressed specifically in tapetal cells and microspores during anther development in stages 8 and 9, when the wild-type tapetal cells initiate a typical apoptosis-like cell death
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	microspore	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Even though ptc1 mutants show phenotypic similarity to ms1 in a lack of tapetal DNA fragmentation, delayed tapetal degeneration, as well as abnormal pollen wall formation and aborted microspore development, the ptc1 mutant displays a previously unreported phenotype of uncontrolled tapetal proliferation and subsequent commencement of necrosis-like tapetal death
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	microspore	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Microarray analysis indicated that 2,417 tapetum- and microspore-expressed genes, which are principally associated with tapetal development, degeneration, and pollen wall formation, had changed expression in ptc1 anthers
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	anther development	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	PTC1 encodes a PHD-finger (for plant homeodomain) protein, which is expressed specifically in tapetal cells and microspores during anther development in stages 8 and 9, when the wild-type tapetal cells initiate a typical apoptosis-like cell death
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	anther development	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Moreover, the regulatory role of PTC1 in anther development was revealed by comparison with MS1 and other rice anther developmental regulators
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	anther development	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	These findings suggest a diversified and conserved switch of PTC1/MS1 in regulating programmed male reproductive development in both dicots and monocots, which provides new insights in plant anther development
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetum	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	Microarray analysis indicated that 2,417 tapetum- and microspore-expressed genes, which are principally associated with tapetal development, degeneration, and pollen wall formation, had changed expression in ptc1 anthers
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	reproductive	PERSISTENT TAPETAL CELL1 encodes a PHD-finger protein that is required for tapetal cell death and pollen development in rice	These findings suggest a diversified and conserved switch of PTC1/MS1 in regulating programmed male reproductive development in both dicots and monocots, which provides new insights in plant anther development
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator and interacts with known tapetal regulatory factors through its plant homeodomain (PHD) regulating tapetal programmed cell death (PCD) and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 In addition, cytological observation revealed delayed tapetal PCD, defective pollen exine formation and a lack of DNA fragmentation according to a TUNEL analysis in the anthers of osms1 mutant
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 Results of qPCR suggested that the expression of the genes associated with tapetal PCD and pollen wall biosynthesis, such as EAT1, AP37, AP25, OsC6 and OsC4, were significantly reduced in osms1 mutant
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 Taken together, our results demonstrate that the interaction of OsMS1 with known tapetal regulatory factors through its PHD finger regulates tapetal PCD and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	development	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	cell death	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator and interacts with known tapetal regulatory factors through its plant homeodomain (PHD) regulating tapetal programmed cell death (PCD) and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetum	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetal	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator and interacts with known tapetal regulatory factors through its plant homeodomain (PHD) regulating tapetal programmed cell death (PCD) and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetal	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 In addition, cytological observation revealed delayed tapetal PCD, defective pollen exine formation and a lack of DNA fragmentation according to a TUNEL analysis in the anthers of osms1 mutant
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetal	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 Results of qPCR suggested that the expression of the genes associated with tapetal PCD and pollen wall biosynthesis, such as EAT1, AP37, AP25, OsC6 and OsC4, were significantly reduced in osms1 mutant
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetal	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 Taken together, our results demonstrate that the interaction of OsMS1 with known tapetal regulatory factors through its PHD finger regulates tapetal PCD and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen wall	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 Results of qPCR suggested that the expression of the genes associated with tapetal PCD and pollen wall biosynthesis, such as EAT1, AP37, AP25, OsC6 and OsC4, were significantly reduced in osms1 mutant
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	PCD	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 Results of qPCR suggested that the expression of the genes associated with tapetal PCD and pollen wall biosynthesis, such as EAT1, AP37, AP25, OsC6 and OsC4, were significantly reduced in osms1 mutant
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	PCD	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 Taken together, our results demonstrate that the interaction of OsMS1 with known tapetal regulatory factors through its PHD finger regulates tapetal PCD and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	transcriptional activator	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	transcriptional activator	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator and interacts with known tapetal regulatory factors through its plant homeodomain (PHD) regulating tapetal programmed cell death (PCD) and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen exine formation	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen exine formation	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator and interacts with known tapetal regulatory factors through its plant homeodomain (PHD) regulating tapetal programmed cell death (PCD) and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen exine formation	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 In addition, cytological observation revealed delayed tapetal PCD, defective pollen exine formation and a lack of DNA fragmentation according to a TUNEL analysis in the anthers of osms1 mutant
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	pollen exine formation	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	 Taken together, our results demonstrate that the interaction of OsMS1 with known tapetal regulatory factors through its PHD finger regulates tapetal PCD and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	tapetal programmed cell death	OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	OsMS1 functions as a transcriptional activator and interacts with known tapetal regulatory factors through its plant homeodomain (PHD) regulating tapetal programmed cell death (PCD) and pollen exine formation in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	transcription factor	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.	 OsMS1 associates with the transcription factor TDR to regulate expression of downstream genes in a temperature-dependent manner
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	temperature	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	temperature	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.	 Temperature regulates the abundances of OsMS1 and OsMS1(wenmin1) proteins
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	temperature	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.	 The high temperature causes more reduction of OsMS1(wenmin1) than OsMS1 in nuclei
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	sterility	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.	 Here, we show that OsMS1 is a histone binding protein, and its natural allele OsMS1(wenmin1) confers thermosensitive male sterility in rice
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	cytoplasm	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.	 OsMS1 is primarily localized in nuclei, while OsMS1(wenmin1) is localized in nuclei and cytoplasm
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	male sterility	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.
PTC1|OsMS1	Os09g0449000	LOC_Os09g27620	male sterility	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.	 Here, we show that OsMS1 is a histone binding protein, and its natural allele OsMS1(wenmin1) confers thermosensitive male sterility in rice
PTC2	Os02g0820800	LOC_Os02g57520	pollen	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	ptc2 showed persistent tapetal cells and abnormal pollen wall patterning including absent nexine, collapsed bacula and disordered tectum
PTC2	Os02g0820800	LOC_Os02g57520	pollen	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The defective tapetal PCD phenotype of ptc2 was similar to that of a PCD delayed mutant, ptc1, in rice, while the abnormal pollen wall patterning resembled that of a pollen wall defective mutant, tek, in Arabidopsis thaliana
PTC2	Os02g0820800	LOC_Os02g57520	pollen	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	Based on these data, we propose a model explaining how PTC2 affects anther and pollen development
PTC2	Os02g0820800	LOC_Os02g57520	pollen	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The characterization of PTC2 in tapetal PCD and pollen wall patterning expands our understanding of the regulatory network of male reproductive development in rice and will aid future breeding approaches
PTC2	Os02g0820800	LOC_Os02g57520	anther	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	Levels of anther cutin monomers in ptc2 anthers were significantly reduced, as was expression of a series of lipid biosynthetic genes
PTC2	Os02g0820800	LOC_Os02g57520	anther	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	PTC2 transcript and protein were shown to be present in the anther after meiosis, consistent with the observed phenotype
PTC2	Os02g0820800	LOC_Os02g57520	anther	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	Based on these data, we propose a model explaining how PTC2 affects anther and pollen development
PTC2	Os02g0820800	LOC_Os02g57520	development	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	Based on these data, we propose a model explaining how PTC2 affects anther and pollen development
PTC2	Os02g0820800	LOC_Os02g57520	development	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The characterization of PTC2 in tapetal PCD and pollen wall patterning expands our understanding of the regulatory network of male reproductive development in rice and will aid future breeding approaches
PTC2	Os02g0820800	LOC_Os02g57520	reproductive	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The characterization of PTC2 in tapetal PCD and pollen wall patterning expands our understanding of the regulatory network of male reproductive development in rice and will aid future breeding approaches
PTC2	Os02g0820800	LOC_Os02g57520	breeding	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The characterization of PTC2 in tapetal PCD and pollen wall patterning expands our understanding of the regulatory network of male reproductive development in rice and will aid future breeding approaches
PTC2	Os02g0820800	LOC_Os02g57520	tapetal	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	ptc2 showed persistent tapetal cells and abnormal pollen wall patterning including absent nexine, collapsed bacula and disordered tectum
PTC2	Os02g0820800	LOC_Os02g57520	tapetal	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The defective tapetal PCD phenotype of ptc2 was similar to that of a PCD delayed mutant, ptc1, in rice, while the abnormal pollen wall patterning resembled that of a pollen wall defective mutant, tek, in Arabidopsis thaliana
PTC2	Os02g0820800	LOC_Os02g57520	tapetal	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The characterization of PTC2 in tapetal PCD and pollen wall patterning expands our understanding of the regulatory network of male reproductive development in rice and will aid future breeding approaches
PTC2	Os02g0820800	LOC_Os02g57520	cutin	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	Levels of anther cutin monomers in ptc2 anthers were significantly reduced, as was expression of a series of lipid biosynthetic genes
PTC2	Os02g0820800	LOC_Os02g57520	pollen development	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	Based on these data, we propose a model explaining how PTC2 affects anther and pollen development
PTC2	Os02g0820800	LOC_Os02g57520	pollen wall	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	ptc2 showed persistent tapetal cells and abnormal pollen wall patterning including absent nexine, collapsed bacula and disordered tectum
PTC2	Os02g0820800	LOC_Os02g57520	pollen wall	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The defective tapetal PCD phenotype of ptc2 was similar to that of a PCD delayed mutant, ptc1, in rice, while the abnormal pollen wall patterning resembled that of a pollen wall defective mutant, tek, in Arabidopsis thaliana
PTC2	Os02g0820800	LOC_Os02g57520	pollen wall	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The characterization of PTC2 in tapetal PCD and pollen wall patterning expands our understanding of the regulatory network of male reproductive development in rice and will aid future breeding approaches
PTC2	Os02g0820800	LOC_Os02g57520	reproductive development	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The characterization of PTC2 in tapetal PCD and pollen wall patterning expands our understanding of the regulatory network of male reproductive development in rice and will aid future breeding approaches
PTC2	Os02g0820800	LOC_Os02g57520	PCD	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The defective tapetal PCD phenotype of ptc2 was similar to that of a PCD delayed mutant, ptc1, in rice, while the abnormal pollen wall patterning resembled that of a pollen wall defective mutant, tek, in Arabidopsis thaliana
PTC2	Os02g0820800	LOC_Os02g57520	PCD	PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning.	The characterization of PTC2 in tapetal PCD and pollen wall patterning expands our understanding of the regulatory network of male reproductive development in rice and will aid future breeding approaches
PTOX1	Os03g0847500	LOC_Os03g63010	tiller	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	Using Ecotype Targeting Induced Local Lesions IN Genomes (EcoTILLING) and TILLING as forward genetic tools, we identified the causative mutation of an EMS mutant characterized by excessive tillering, semi-dwarfism and leaf variegation that corresponded to the PTOX1 gene
PTOX1	Os03g0847500	LOC_Os03g63010	tiller	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	The tillering and semi-dwarf phenotypes of the ptox1 mutant are similar to phenotypes of known strigolactone (SL)-related rice mutants, and both phenotypic traits could be rescued by application of the synthetic SL GR24
PTOX1	Os03g0847500	LOC_Os03g63010	strigolactone	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	The tillering and semi-dwarf phenotypes of the ptox1 mutant are similar to phenotypes of known strigolactone (SL)-related rice mutants, and both phenotypic traits could be rescued by application of the synthetic SL GR24
PTOX1	Os03g0847500	LOC_Os03g63010	tillering	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	Using Ecotype Targeting Induced Local Lesions IN Genomes (EcoTILLING) and TILLING as forward genetic tools, we identified the causative mutation of an EMS mutant characterized by excessive tillering, semi-dwarfism and leaf variegation that corresponded to the PTOX1 gene
PTOX1	Os03g0847500	LOC_Os03g63010	tillering	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	The tillering and semi-dwarf phenotypes of the ptox1 mutant are similar to phenotypes of known strigolactone (SL)-related rice mutants, and both phenotypic traits could be rescued by application of the synthetic SL GR24
PTOX1	Os03g0847500	LOC_Os03g63010	leaf	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	Using Ecotype Targeting Induced Local Lesions IN Genomes (EcoTILLING) and TILLING as forward genetic tools, we identified the causative mutation of an EMS mutant characterized by excessive tillering, semi-dwarfism and leaf variegation that corresponded to the PTOX1 gene
PTOX1	Os03g0847500	LOC_Os03g63010	leaf	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	The ptox1 mutant accumulated phytoene in white leaf sectors with a corresponding deficiency in beta-carotene, consistent with the expected function of PTOX1 in promoting phytoene desaturase activity
PTOX1	Os03g0847500	LOC_Os03g63010	dwarf	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	Using Ecotype Targeting Induced Local Lesions IN Genomes (EcoTILLING) and TILLING as forward genetic tools, we identified the causative mutation of an EMS mutant characterized by excessive tillering, semi-dwarfism and leaf variegation that corresponded to the PTOX1 gene
PTOX1	Os03g0847500	LOC_Os03g63010	dwarf	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	The tillering and semi-dwarf phenotypes of the ptox1 mutant are similar to phenotypes of known strigolactone (SL)-related rice mutants, and both phenotypic traits could be rescued by application of the synthetic SL GR24
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	transporter	Physiological, genetic, and molecular characterization of a high-Cd-accumulating rice cultivar, Jarjan	Furthermore, we isolated OsHMA3, a gene encoding a tonoplast-localized Cd transporter from Jarjan
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	* In this study, using positional cloning and transgenic strategies, heavy metal ATPase 3 (OsHMA3) was identified as the gene that controls root-to-shoot Cd translocation rates
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	* The allele of OsHMA3 that confers high root-to-shoot Cd translocation rates (OsHMA3mc) encodes a defective P(1B) -ATPase transporter
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	* We propose that the root cell cytoplasm of Cd-overaccumulating rice plants has more Cd available for loading into the xylem as a result of the lack of OsHMA3-mediated transportation of Cd to the vacuoles
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	transporter	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	* The allele of OsHMA3 that confers high root-to-shoot Cd translocation rates (OsHMA3mc) encodes a defective P(1B) -ATPase transporter
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	Gene limiting cadmium accumulation in rice	Our results indicated that OsHMA3 from the low Cd-accumulating cultivar limits translocation of Cd from the roots to the above-ground tissues by selectively sequestrating Cd into the root vacuoles
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	xylem	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	* We propose that the root cell cytoplasm of Cd-overaccumulating rice plants has more Cd available for loading into the xylem as a result of the lack of OsHMA3-mediated transportation of Cd to the vacuoles
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	transporter	Functional analysis of the C-terminal region of the vacuolar cadmium-transporting rice OsHMA3	Rice OsHMA3 is a vacuolar cadmium (Cd) transporter belonging to the P1B-ATPase family and has a long (273aa) C-terminal region
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	cadmium	Functional analysis of the C-terminal region of the vacuolar cadmium-transporting rice OsHMA3	Rice OsHMA3 is a vacuolar cadmium (Cd) transporter belonging to the P1B-ATPase family and has a long (273aa) C-terminal region
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	cadmium	Functional analysis of the C-terminal region of the vacuolar cadmium-transporting rice OsHMA3	Functional analysis of the C-terminal region of the vacuolar cadmium-transporting rice OsHMA3
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	Physiological, genetic, and molecular characterization of a high-Cd-accumulating rice cultivar, Jarjan	The OsHMA3 protein was localized in all roots cells, but the sequence has a mutation leading to loss of function
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	Physiological, genetic, and molecular characterization of a high-Cd-accumulating rice cultivar, Jarjan	Therefore, failure to sequester Cd into the root vacuoles by OsHMA3 is probably responsible for high Cd accumulation in Jarjan
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	cadmium	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	shoot	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	* In this study, using positional cloning and transgenic strategies, heavy metal ATPase 3 (OsHMA3) was identified as the gene that controls root-to-shoot Cd translocation rates
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	shoot	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	* The allele of OsHMA3 that confers high root-to-shoot Cd translocation rates (OsHMA3mc) encodes a defective P(1B) -ATPase transporter
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	shoot	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	Overexpression of OsHMA3 selectively reduces Cd accumulation in the grain
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	Taken together, overexpression of OsHMA3 is an efficient way to reduce Cd accumulation in the grain and to enhance Cd tolerance in rice
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	ATPase	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	As a member of the heavy metal ATPase (HMA) family, OsHMA3 is a tonoplast-localized transporter for Cd in the roots of rice (Oryza sativa)
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	transporter	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	transporter	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	As a member of the heavy metal ATPase (HMA) family, OsHMA3 is a tonoplast-localized transporter for Cd in the roots of rice (Oryza sativa)
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	tolerance	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	tolerance	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	Further characterization in the present study revealed that overexpression of OsHMA3 also enhances the tolerance to toxic Cd
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	tolerance	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	Taken together, overexpression of OsHMA3 is an efficient way to reduce Cd accumulation in the grain and to enhance Cd tolerance in rice
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	A loss-of-function allele of OsHMA3 associated with high cadmium accumulation in shoots and grain of Japonica rice cultivars.	A loss-of-function allele of OsHMA3 associated with high cadmium accumulation in shoots and grain of Japonica rice cultivars.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	A loss-of-function allele of OsHMA3 associated with high cadmium accumulation in shoots and grain of Japonica rice cultivars.	Our study has identified a new loss-of-function allele of OsHMA3 in Japonica rice cultivars leading to high Cd accumulation in shoots and grain
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	cadmium	A loss-of-function allele of OsHMA3 associated with high cadmium accumulation in shoots and grain of Japonica rice cultivars.	A loss-of-function allele of OsHMA3 associated with high cadmium accumulation in shoots and grain of Japonica rice cultivars.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	vascular bundle	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	Furthermore, OsHMA3 protein was detected in the root pericycle cells and phloem region of both the diffuse vascular bundle and the enlarged vascular bundle of the nodes
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	Furthermore, OsHMA3 protein was detected in the root pericycle cells and phloem region of both the diffuse vascular bundle and the enlarged vascular bundle of the nodes
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	These results indicate that expression of OsHMA3 under the control of OsHMA2 promoter can effectively reduce Cd accumulation in rice grain through sequestering more Cd into the vacuoles of various tissues
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	phloem	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	Furthermore, OsHMA3 protein was detected in the root pericycle cells and phloem region of both the diffuse vascular bundle and the enlarged vascular bundle of the nodes
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	cadmium	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of OsHMA2 promoter.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	shoot	Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice.	We found that the two GCC7 alleles, GCC7PA64s and GCC793-11 , had different promoter activity of OsHMA3, leading to different OsHMA3 expression and different shoot and grain Cd concentrations
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice.	Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice.	We found that the two GCC7 alleles, GCC7PA64s and GCC793-11 , had different promoter activity of OsHMA3, leading to different OsHMA3 expression and different shoot and grain Cd concentrations
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice.	Our results thus reveal that the QTL GCC7 with sequence variation in the OsHMA3 promoter is an important determinant controlling differential grain Cd accumulation between Indica and Japonica rice
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	cadmium	Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice.	Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	grain	Map-based cloning of a new total loss-of-function allele of OsHMA3 causing high cadmium accumulation in rice grain.	Taken together, we have identified a new allele of OsHMA3 with a total loss of function, resulting in a greatly elevated Cd translocation to the shoots and grain of rice
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	map-based cloning	Map-based cloning of a new total loss-of-function allele of OsHMA3 causing high cadmium accumulation in rice grain.	Map-based cloning of a new total loss-of-function allele of OsHMA3 causing high cadmium accumulation in rice grain.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	cadmium	Map-based cloning of a new total loss-of-function allele of OsHMA3 causing high cadmium accumulation in rice grain.	Map-based cloning of a new total loss-of-function allele of OsHMA3 causing high cadmium accumulation in rice grain.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	A tonoplast-localized OsHMA3 plays an important role in maintaining Zn homeostasis in rice.	By comparing rice accessions with functional allele of OsHMA3 with accessions with loss of function allele of OsHMA3, we found that accessions with functional OsHMA3 showed higher tolerance to high Zn than those with non-functional OsHMA3 based on root elongation test
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	A tonoplast-localized OsHMA3 plays an important role in maintaining Zn homeostasis in rice.	When exposed to Zn-free solution, the Zn concentration in the root cell sap was rapidly decreased in the accessions with functional OsHMA3, but less changed in the accessions with non-functional OsHMA3
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	tolerance	A tonoplast-localized OsHMA3 plays an important role in maintaining Zn homeostasis in rice.	By comparing rice accessions with functional allele of OsHMA3 with accessions with loss of function allele of OsHMA3, we found that accessions with functional OsHMA3 showed higher tolerance to high Zn than those with non-functional OsHMA3 based on root elongation test
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root elongation	A tonoplast-localized OsHMA3 plays an important role in maintaining Zn homeostasis in rice.	By comparing rice accessions with functional allele of OsHMA3 with accessions with loss of function allele of OsHMA3, we found that accessions with functional OsHMA3 showed higher tolerance to high Zn than those with non-functional OsHMA3 based on root elongation test
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	homeostasis	A tonoplast-localized OsHMA3 plays an important role in maintaining Zn homeostasis in rice.	A tonoplast-localized OsHMA3 plays an important role in maintaining Zn homeostasis in rice.
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	cadmium accumulation	Comprehensive analysis of variation of cadmium accumulation in rice and detection of a new weak allele of OsHMA3	Comprehensive analysis of variation of cadmium accumulation in rice and detection of a new weak allele of OsHMA3
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	xylem	Calcium Plays a Double-Edged Role in Modulating Cadmium Uptake and Translocation in Rice	However, Ca application facilitated the upward translocation of Cd by both upregulating OsHMA2 to induce xylem loading of Cd and downregulating OsHMA3 to reduce vacuolar sequestration of Cd
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	Fe	Effects of Fe and Mn cations on Cd uptake by rice plant in hydroponic culture experiment	Meanwhile, application of sufficient doses of Fe and Cd in solution culture increased RE of CAL1, OsNRAMP5, OsNRAMP1, OsIRT1, and OsNAAT1 in roots, whereas expression level of OsHMA3 was decreased
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	root	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	auxin	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	auxin	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	Overexpression of functional OsHMA3 in rice greatly alleviated the inhibitory effect of Cd, but the protective effect of OsHMA3 was abolished by the auxin polar transport inhibitor 1-N-naphthylphthalamic acid
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	auxin	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	The results suggest that Cd inhibits LR development in rice by disrupting OsPIN-mediated auxin distribution to LPR and OsHMA3 protects against Cd toxicity by sequestering Cd into the vacuoles
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	development	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	The results suggest that Cd inhibits LR development in rice by disrupting OsPIN-mediated auxin distribution to LPR and OsHMA3 protects against Cd toxicity by sequestering Cd into the vacuoles
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	ATPase	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	The emergence of LRs in a rice cultivar with a null allele of OsHMA3 (Heavy Metal ATPase 3) was more sensitive to Cd than cultivars with functional alleles
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	cadmium	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	lateral root	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3	Cadmium inhibits lateral root emergence in rice by disrupting OsPIN-mediated auxin distribution and the protective effect of OsHMA3
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	drought	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	stress	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	transporter	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	drought stress	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
qCdT7|OsHMA3	Os07g0232900	LOC_Os07g12900	drought stress	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition	Furthermore, the expression of the Cd transporter genes, OsHMA2, OsHMA3 and OsLCT1 were curtailed in NPs-treated rice plants under normal and drought stress conditions
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	fertility	qCTB7 positively regulates cold tolerance at booting stage in rice.	 Here, we identified the PHD-finger domain-containing protein gene qCTB7 using QTL-seq and linkage analysis through systematic measurement of CTB differences and the spike fertility of the Longjing31 and Longdao3 cultivars, resulting in the derivation of 1570 F2 progeny under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	fertility	qCTB7 positively regulates cold tolerance at booting stage in rice.	 When subjected to cold stress, the germination of qctb7 pollen on the stigma was reduced, resulting in lower spike fertility
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	pollen	qCTB7 positively regulates cold tolerance at booting stage in rice.	LOC_Os07g07690 on qCTB7 is associated with cold tolerance at the booting stage in rice, and analysis of transgenic plants demonstrated that qCTB7 influenced cold tolerance by altering the morphology and cytoarchitecture of anthers and pollen
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	pollen	qCTB7 positively regulates cold tolerance at booting stage in rice.	 It was found that overexpression of qCTB7 promoted CTB and the same yield as Longdao3 under normal growing conditions while the phenotype of qctb7 knockout showed anther and pollen failure under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	pollen	qCTB7 positively regulates cold tolerance at booting stage in rice.	 When subjected to cold stress, the germination of qctb7 pollen on the stigma was reduced, resulting in lower spike fertility
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	pollen	qCTB7 positively regulates cold tolerance at booting stage in rice.	 These findings indicate that qCTB7 regulates the appearance, morphology, and cytoarchitecture of the anthers and pollen
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	anther	qCTB7 positively regulates cold tolerance at booting stage in rice.	 It was found that overexpression of qCTB7 promoted CTB and the same yield as Longdao3 under normal growing conditions while the phenotype of qctb7 knockout showed anther and pollen failure under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	stress	qCTB7 positively regulates cold tolerance at booting stage in rice.	 Here, we identified the PHD-finger domain-containing protein gene qCTB7 using QTL-seq and linkage analysis through systematic measurement of CTB differences and the spike fertility of the Longjing31 and Longdao3 cultivars, resulting in the derivation of 1570 F2 progeny under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	stress	qCTB7 positively regulates cold tolerance at booting stage in rice.	 It was found that overexpression of qCTB7 promoted CTB and the same yield as Longdao3 under normal growing conditions while the phenotype of qctb7 knockout showed anther and pollen failure under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	tolerance	qCTB7 positively regulates cold tolerance at booting stage in rice.	qCTB7 positively regulates cold tolerance at booting stage in rice.
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	tolerance	qCTB7 positively regulates cold tolerance at booting stage in rice.	LOC_Os07g07690 on qCTB7 is associated with cold tolerance at the booting stage in rice, and analysis of transgenic plants demonstrated that qCTB7 influenced cold tolerance by altering the morphology and cytoarchitecture of anthers and pollen
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	tolerance	qCTB7 positively regulates cold tolerance at booting stage in rice.	 Three SNPs in the promoter region and coding region of qCTB7 were identified as recognition signals for CTB in rice and could assist breeding efforts to improve cold tolerance for rice production in high latitudes
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	yield	qCTB7 positively regulates cold tolerance at booting stage in rice.	 It was found that overexpression of qCTB7 promoted CTB and the same yield as Longdao3 under normal growing conditions while the phenotype of qctb7 knockout showed anther and pollen failure under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold tolerance	qCTB7 positively regulates cold tolerance at booting stage in rice.	qCTB7 positively regulates cold tolerance at booting stage in rice.
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold tolerance	qCTB7 positively regulates cold tolerance at booting stage in rice.	LOC_Os07g07690 on qCTB7 is associated with cold tolerance at the booting stage in rice, and analysis of transgenic plants demonstrated that qCTB7 influenced cold tolerance by altering the morphology and cytoarchitecture of anthers and pollen
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold tolerance	qCTB7 positively regulates cold tolerance at booting stage in rice.	 Three SNPs in the promoter region and coding region of qCTB7 were identified as recognition signals for CTB in rice and could assist breeding efforts to improve cold tolerance for rice production in high latitudes
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold stress	qCTB7 positively regulates cold tolerance at booting stage in rice.	 Here, we identified the PHD-finger domain-containing protein gene qCTB7 using QTL-seq and linkage analysis through systematic measurement of CTB differences and the spike fertility of the Longjing31 and Longdao3 cultivars, resulting in the derivation of 1570 F2 progeny under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold stress	qCTB7 positively regulates cold tolerance at booting stage in rice.	 It was found that overexpression of qCTB7 promoted CTB and the same yield as Longdao3 under normal growing conditions while the phenotype of qctb7 knockout showed anther and pollen failure under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold stress	qCTB7 positively regulates cold tolerance at booting stage in rice.	 When subjected to cold stress, the germination of qctb7 pollen on the stigma was reduced, resulting in lower spike fertility
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold	qCTB7 positively regulates cold tolerance at booting stage in rice.	qCTB7 positively regulates cold tolerance at booting stage in rice.
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold	qCTB7 positively regulates cold tolerance at booting stage in rice.	LOC_Os07g07690 on qCTB7 is associated with cold tolerance at the booting stage in rice, and analysis of transgenic plants demonstrated that qCTB7 influenced cold tolerance by altering the morphology and cytoarchitecture of anthers and pollen
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold	qCTB7 positively regulates cold tolerance at booting stage in rice.	 Here, we identified the PHD-finger domain-containing protein gene qCTB7 using QTL-seq and linkage analysis through systematic measurement of CTB differences and the spike fertility of the Longjing31 and Longdao3 cultivars, resulting in the derivation of 1570 F2 progeny under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold	qCTB7 positively regulates cold tolerance at booting stage in rice.	 It was found that overexpression of qCTB7 promoted CTB and the same yield as Longdao3 under normal growing conditions while the phenotype of qctb7 knockout showed anther and pollen failure under cold stress
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold	qCTB7 positively regulates cold tolerance at booting stage in rice.	 When subjected to cold stress, the germination of qctb7 pollen on the stigma was reduced, resulting in lower spike fertility
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	cold	qCTB7 positively regulates cold tolerance at booting stage in rice.	 Three SNPs in the promoter region and coding region of qCTB7 were identified as recognition signals for CTB in rice and could assist breeding efforts to improve cold tolerance for rice production in high latitudes
qCTB7	Os07g0173300|Os07g0173400	LOC_Os07g07690	breeding	qCTB7 positively regulates cold tolerance at booting stage in rice.	 Three SNPs in the promoter region and coding region of qCTB7 were identified as recognition signals for CTB in rice and could assist breeding efforts to improve cold tolerance for rice production in high latitudes
qCTS-9	Os09g0410300	LOC_Os09g24440	seedling	A novel functional gene associated with cold tolerance at the seedling stage in rice.	In the previous study, we identified a cold-tolerant QTL at the seedling stage, qCTS-9 which could be detected under different cold environments using a recombinant inbred line (RIL) population derived from a cold-tolerant variety Lijiangxintuanheigu (LTH) and a cold-sensitive variety Shanhuangzhan 2 (SHZ-2)
qCTS-9	Os09g0410300	LOC_Os09g24440	seedling	A novel functional gene associated with cold tolerance at the seedling stage in rice.	Identification of the functional gene underlying qCTS-9 and development of the gene-specific marker will facilitate molecular breeding for cold tolerance at the seedling stage in rice through transgenic approach and marker-assisted selection (MAS)
qCTS-9	Os09g0410300	LOC_Os09g24440	development	A novel functional gene associated with cold tolerance at the seedling stage in rice.	Identification of the functional gene underlying qCTS-9 and development of the gene-specific marker will facilitate molecular breeding for cold tolerance at the seedling stage in rice through transgenic approach and marker-assisted selection (MAS)
qCTS-9	Os09g0410300	LOC_Os09g24440	tolerance	A novel functional gene associated with cold tolerance at the seedling stage in rice.	Identification of the functional gene underlying qCTS-9 and development of the gene-specific marker will facilitate molecular breeding for cold tolerance at the seedling stage in rice through transgenic approach and marker-assisted selection (MAS)
qCTS-9	Os09g0410300	LOC_Os09g24440	cold tolerance	A novel functional gene associated with cold tolerance at the seedling stage in rice.	Identification of the functional gene underlying qCTS-9 and development of the gene-specific marker will facilitate molecular breeding for cold tolerance at the seedling stage in rice through transgenic approach and marker-assisted selection (MAS)
qCTS-9	Os09g0410300	LOC_Os09g24440	breeding	A novel functional gene associated with cold tolerance at the seedling stage in rice.	Identification of the functional gene underlying qCTS-9 and development of the gene-specific marker will facilitate molecular breeding for cold tolerance at the seedling stage in rice through transgenic approach and marker-assisted selection (MAS)
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain quality	Control of grain size, shape and quality by OsSPL16 in rice	We also show that a marker-assisted strategy targeted at elite alleles of GS3 and OsSPL16 underlying grain size and shape can be effectively used to simultaneously improve grain quality and yield
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain size	Control of grain size, shape and quality by OsSPL16 in rice	We also show that a marker-assisted strategy targeted at elite alleles of GS3 and OsSPL16 underlying grain size and shape can be effectively used to simultaneously improve grain quality and yield
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain size	Control of grain size, shape and quality by OsSPL16 in rice	Control of grain size, shape and quality by OsSPL16 in rice
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	yield	Control of grain size, shape and quality by OsSPL16 in rice	We also show that a marker-assisted strategy targeted at elite alleles of GS3 and OsSPL16 underlying grain size and shape can be effectively used to simultaneously improve grain quality and yield
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain	Control of grain size, shape and quality by OsSPL16 in rice	We also show that a marker-assisted strategy targeted at elite alleles of GS3 and OsSPL16 underlying grain size and shape can be effectively used to simultaneously improve grain quality and yield
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain	Control of grain size, shape and quality by OsSPL16 in rice	Control of grain size, shape and quality by OsSPL16 in rice
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins	 Thus, the overall results revealed that CRISPR/Cas9-guided OsSPL16 mutations have the potential to boost the grain yield of rice
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain yield	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain yield	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins	 Thus, the overall results revealed that CRISPR/Cas9-guided OsSPL16 mutations have the potential to boost the grain yield of rice
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	yield	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	yield	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins	 Thus, the overall results revealed that CRISPR/Cas9-guided OsSPL16 mutations have the potential to boost the grain yield of rice
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	cell cycle	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins	Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain	Targeted manipulation of grain shape genes effectively improves outcrossing rate and hybrid seed production in rice.	 In this study, we identified three grain shape regulatory genes, GS3, GW8 and GS9, as potential candidate genes for targeted manipulation of grain shape and SER
qGW8|OsSPL16|GW8	Os08g0531600	LOC_Os08g41940	grain shape	Targeted manipulation of grain shape genes effectively improves outcrossing rate and hybrid seed production in rice.	 In this study, we identified three grain shape regulatory genes, GS3, GW8 and GS9, as potential candidate genes for targeted manipulation of grain shape and SER
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	crown	Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem	During embryogenesis and crown root formation, QHB expression was observed prior to the morphological differentiation of the root
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	crown	Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem	However, we detected different QHB expression patterns in the process of the RAM development, specifically between radicle and crown root formation, suggesting that the cell-fate determination of the QC may be controlled by different mechanisms
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	root	Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem	Using transformants carrying the QHB promoter-GUS and in situ hybridization, we found that QHB was specifically expressed in the central cells of a quiescent center (QC) of the root
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	root	Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem	During embryogenesis and crown root formation, QHB expression was observed prior to the morphological differentiation of the root
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	root	Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem	However, we detected different QHB expression patterns in the process of the RAM development, specifically between radicle and crown root formation, suggesting that the cell-fate determination of the QC may be controlled by different mechanisms
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	crown root	Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem	During embryogenesis and crown root formation, QHB expression was observed prior to the morphological differentiation of the root
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	crown root	Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem	However, we detected different QHB expression patterns in the process of the RAM development, specifically between radicle and crown root formation, suggesting that the cell-fate determination of the QC may be controlled by different mechanisms
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	development	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Thus, our findings provide new insights into the role of rice WOX gene family in rice development and salt tolerance, and suggest that OsQHB is a valuable target for improving rice production in environments characterized by salt stress
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	grain	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	grain length	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	panicle	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	tiller	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	salt	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	salt	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	salt	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Moreover, the osqhb mutants have higher ROS-scavenging enzymes activities and lower accumulation of ROS and malondialdehyde (MDA) under salt stress
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	salt	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Thus, our findings provide new insights into the role of rice WOX gene family in rice development and salt tolerance, and suggest that OsQHB is a valuable target for improving rice production in environments characterized by salt stress
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	tolerance	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	tolerance	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	salt tolerance	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	salt tolerance	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	salt tolerance	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Thus, our findings provide new insights into the role of rice WOX gene family in rice development and salt tolerance, and suggest that OsQHB is a valuable target for improving rice production in environments characterized by salt stress
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	salt stress	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Moreover, the osqhb mutants have higher ROS-scavenging enzymes activities and lower accumulation of ROS and malondialdehyde (MDA) under salt stress
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	salt stress	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Thus, our findings provide new insights into the role of rice WOX gene family in rice development and salt tolerance, and suggest that OsQHB is a valuable target for improving rice production in environments characterized by salt stress
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	stress	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Moreover, the osqhb mutants have higher ROS-scavenging enzymes activities and lower accumulation of ROS and malondialdehyde (MDA) under salt stress
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	stress	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Thus, our findings provide new insights into the role of rice WOX gene family in rice development and salt tolerance, and suggest that OsQHB is a valuable target for improving rice production in environments characterized by salt stress
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	plant height	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	tiller number	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	grain width	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	panicle length	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Mutation in OsQHB led to a decrease in plant height, tiller number, panicle length, grain length and grain width, and an increase in salt tolerance
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	reactive oxygen species	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	reactive oxygen species	OsQHB Improves Salt Tolerance by Scavenging Reactive Oxygen Species in Rice.	 Transcriptome and qPCR analysis showed that reactive oxygen species (ROS) scavenging-related genes were regulated by OsQHB
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	shoot	Ectopic expression of WOX5 promotes cytokinin signaling and de novo shoot regeneration.	 The function of WOX5 in enhancing cytokinin-dependent shoot regeneration is evolutionarily conserved, as conditional overexpression of OsWOX5 on SIM profoundly enhanced shoot regeneration in rice callus
QHB|OsQHB|OsWOX5	Os01g0854500	LOC_Os01g63510	callus	Ectopic expression of WOX5 promotes cytokinin signaling and de novo shoot regeneration.	 The function of WOX5 in enhancing cytokinin-dependent shoot regeneration is evolutionarily conserved, as conditional overexpression of OsWOX5 on SIM profoundly enhanced shoot regeneration in rice callus
qLTG3-1	Os03g0103300	LOC_Os03g01320	temperature	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice	Previously, qLTG3-1, a major quantitative trait locus controlling low-temperature tolerance at the germination stage in rice (called low-temperature germinability) was identified, which encodes a protein of unknown function
qLTG3-1	Os03g0103300	LOC_Os03g01320	temperature	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice	In particular, genes involved in defense responses were up-regulated by qLTG3-1, indicating that qLTG3-1 expression is required for the expression of defense response genes in low-temperature germinability in rice
qLTG3-1	Os03g0103300	LOC_Os03g01320	temperature	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice
qLTG3-1	Os03g0103300	LOC_Os03g01320	seed germination	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice	Most of these genes might be involved in the process of seed germination itself, and then a focus was made on qLTG3-1 dependently induced or suppressed genes, defined as 'qLTG3-1 dependent' genes
qLTG3-1	Os03g0103300	LOC_Os03g01320	homeostasis	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice	Twenty-nine 'qLTG3-1 dependent' genes with diverse functions were categorized, implying that disruption of cellular homeostasis leads to a wide range of metabolic alterations and diverse cross-talk between various signaling pathways
qLTG3-1	Os03g0103300	LOC_Os03g01320	seed	Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice	The QTL qLTG3-1 is strongly expressed in the embryo during seed germination
qLTG3-1	Os03g0103300	LOC_Os03g01320	temperature	Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice	To understand the molecular basis of one of these QTLs, qLTG3-1 (quantitative trait locus for low-temperature germinability on chromosome 3), map-based cloning was performed, and this QTL was shown to be encoded by a protein of unknown function
qLTG3-1	Os03g0103300	LOC_Os03g01320	temperature	Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice	Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice
qLTG3-1	Os03g0103300	LOC_Os03g01320	defense	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice	In particular, genes involved in defense responses were up-regulated by qLTG3-1, indicating that qLTG3-1 expression is required for the expression of defense response genes in low-temperature germinability in rice
qLTG3-1	Os03g0103300	LOC_Os03g01320	seed germination	Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice	The QTL qLTG3-1 is strongly expressed in the embryo during seed germination
qLTG3-1	Os03g0103300	LOC_Os03g01320	defense response	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice	In particular, genes involved in defense responses were up-regulated by qLTG3-1, indicating that qLTG3-1 expression is required for the expression of defense response genes in low-temperature germinability in rice
qLTG3-1	Os03g0103300	LOC_Os03g01320	seed	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice	Most of these genes might be involved in the process of seed germination itself, and then a focus was made on qLTG3-1 dependently induced or suppressed genes, defined as 'qLTG3-1 dependent' genes
qLTG3-1	Os03g0103300	LOC_Os03g01320	breeding	Characterization of a New qLTG3-1 Allele for Low-temperature Germinability in Rice<U+00A0>from the<U+00A0>Wild Species Oryza rufipogon.	rufipogon qLTG3-1 allele can be utilized for the improvement of LTG in rice breeding programs
qRT9|OsbHLH120	Os09g0455300	LOC_Os09g28210	root thickness	qRT9, a quantitative trait locus controlling root thickness and root length in upland rice	qRT9, a quantitative trait locus controlling root thickness and root length in upland rice
qRT9|OsbHLH120	Os09g0455300	LOC_Os09g28210	root length	qRT9, a quantitative trait locus controlling root thickness and root length in upland rice	qRT9, a quantitative trait locus controlling root thickness and root length in upland rice
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	shattering	Selection on grain shattering genes and rates of rice domestication	Here, we studied nucleotide variation at the shattering loci, sh4 and qSH1, for cultivated rice, Oryza sativa ssp
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	shattering	An SNP caused loss of seed shattering during rice domestication	We revealed that the qSH1 gene, a major quantitative trait locus of seed shattering in rice, encodes a BEL1-type homeobox gene and demonstrated that a single-nucleotide polymorphism (SNP) in the 5' regulatory region of the qSH1 gene caused loss of seed shattering owing to the absence of abscission layer formation
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	seed	An SNP caused loss of seed shattering during rice domestication	We revealed that the qSH1 gene, a major quantitative trait locus of seed shattering in rice, encodes a BEL1-type homeobox gene and demonstrated that a single-nucleotide polymorphism (SNP) in the 5' regulatory region of the qSH1 gene caused loss of seed shattering owing to the absence of abscission layer formation
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	awn	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	seed	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	seed	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.	Special interest was the detection of the most significant association SNP, sf0136352825, which was less than 95 kb from the seed shattering gene qSH1
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	shattering	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	shattering	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.	Special interest was the detection of the most significant association SNP, sf0136352825, which was less than 95 kb from the seed shattering gene qSH1
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	seed shattering	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	seed shattering	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.	Special interest was the detection of the most significant association SNP, sf0136352825, which was less than 95 kb from the seed shattering gene qSH1
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	shoot	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	In addition, both RI and RIL1 seem to be involved in meristem maintenance, because the ri ril1 double mutant failed to establish or maintain the shoot apical meristem during embryogenesis
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	meristem	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	In addition, both RI and RIL1 seem to be involved in meristem maintenance, because the ri ril1 double mutant failed to establish or maintain the shoot apical meristem during embryogenesis
qSH1|RIL1	Os01g0848400	LOC_Os01g62920	shoot apical meristem	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	In addition, both RI and RIL1 seem to be involved in meristem maintenance, because the ri ril1 double mutant failed to establish or maintain the shoot apical meristem during embryogenesis
qSOR1	Os07g0614400	LOC_Os07g42290	gravitropic response	Root angle modifications by the DRO1 homolog improve rice yields in saline paddy fields	qSOR1 is negatively regulated by auxin, predominantly expressed in root columella cells, and involved in the gravitropic responses of roots
qSOR1	Os07g0614400	LOC_Os07g42290	root	Root angle modifications by the DRO1 homolog improve rice yields in saline paddy fields	Here, we have demonstrated, through the cloning and characterization of qSOR1 (quantitative trait locus for SOIL SURFACE ROOTING 1), that a shallower root growth angle (RGA) could enhance rice yields in saline paddies
qSOR1	Os07g0614400	LOC_Os07g42290	root	Root angle modifications by the DRO1 homolog improve rice yields in saline paddy fields	qSOR1 is negatively regulated by auxin, predominantly expressed in root columella cells, and involved in the gravitropic responses of roots
qSOR1	Os07g0614400	LOC_Os07g42290	growth	Root angle modifications by the DRO1 homolog improve rice yields in saline paddy fields	Here, we have demonstrated, through the cloning and characterization of qSOR1 (quantitative trait locus for SOIL SURFACE ROOTING 1), that a shallower root growth angle (RGA) could enhance rice yields in saline paddies
qSOR1	Os07g0614400	LOC_Os07g42290	root growth	Root angle modifications by the DRO1 homolog improve rice yields in saline paddy fields	Here, we have demonstrated, through the cloning and characterization of qSOR1 (quantitative trait locus for SOIL SURFACE ROOTING 1), that a shallower root growth angle (RGA) could enhance rice yields in saline paddies
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	grain	A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice.	A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice.
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	grain size	A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice.	A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice.
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	breeding	A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice.	 The loss-of-function form of OsSK41 at qTGW3 represents a rare allele that has not been extensively utilized in rice breeding
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	Kinase	A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice.	A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice.
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	growth	How rice Glycogen Synthase Kinase-like 5 (OsGSK5) integrates salinity stress response to source-sink adaptation: a proposed model.	 Short-term (14)CO2 feeding experiments suggested that OsGSK5 promoted higher flux to starch accumulation in the roots under this condition and that this mechanism may help to underscore the better growth characteristics observed
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	starch	How rice Glycogen Synthase Kinase-like 5 (OsGSK5) integrates salinity stress response to source-sink adaptation: a proposed model.	 Short-term (14)CO2 feeding experiments suggested that OsGSK5 promoted higher flux to starch accumulation in the roots under this condition and that this mechanism may help to underscore the better growth characteristics observed
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	starch	How rice Glycogen Synthase Kinase-like 5 (OsGSK5) integrates salinity stress response to source-sink adaptation: a proposed model.	 Here, we expand upon this hypothesis and consider (i) how OsGSK5 action could fit into a signaling model that integrates salinity stress to changes in starch metabolism, and (ii) how this would facilitate whole plant physiological adaptions in source-to-sink partitioning
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	salinity	How rice Glycogen Synthase Kinase-like 5 (OsGSK5) integrates salinity stress response to source-sink adaptation: a proposed model.	 Here, we expand upon this hypothesis and consider (i) how OsGSK5 action could fit into a signaling model that integrates salinity stress to changes in starch metabolism, and (ii) how this would facilitate whole plant physiological adaptions in source-to-sink partitioning
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	stress	How rice Glycogen Synthase Kinase-like 5 (OsGSK5) integrates salinity stress response to source-sink adaptation: a proposed model.	 Here, we expand upon this hypothesis and consider (i) how OsGSK5 action could fit into a signaling model that integrates salinity stress to changes in starch metabolism, and (ii) how this would facilitate whole plant physiological adaptions in source-to-sink partitioning
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	salinity stress	How rice Glycogen Synthase Kinase-like 5 (OsGSK5) integrates salinity stress response to source-sink adaptation: a proposed model.	 Here, we expand upon this hypothesis and consider (i) how OsGSK5 action could fit into a signaling model that integrates salinity stress to changes in starch metabolism, and (ii) how this would facilitate whole plant physiological adaptions in source-to-sink partitioning
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	grain	Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.	Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	grain size	Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.	Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	brassinosteroid	Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.	 In addition, physiological and molecular studies suggest that TGW3 mediates the brassinosteroid response, the effect of which can be relayed through the regulatory axis
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	Brassinosteroid	Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.	 In addition, physiological and molecular studies suggest that TGW3 mediates the brassinosteroid response, the effect of which can be relayed through the regulatory axis
qTGW3|TGW3|GL3.3|OsGSK5|OsSK41	Os03g0841800	LOC_Os03g62500	auxin	Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.	Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.
R2	Os05g0392300	LOC_Os05g32600	root	Differential expression of genes for cyclin-dependent protein kinases in rice plants	We have analyzed the expression of four rice (Oryza sativa) CDK genes, cdc2Os1, cdc2Os2, cdc2Os3, and R2, by in situ hybridization of sections of root apices
R2	Os05g0392300	LOC_Os05g32600	root	Differential expression of genes for cyclin-dependent protein kinases in rice plants	Transcripts of cdc2Os1, cdc2Os2, and R2 were detected uniformly in the dividing region of the root apex
R2	Os05g0392300	LOC_Os05g32600	temperature	A rice homolog of Cdk7/MO15 phosphorylates both cyclin-dependent protein kinases and the carboxy-terminal domain of RNA polymerase II	When R2 was overexpressed in a CAK-deficient mutant of budding yeast, it suppressed the temperature sensitivity of the mutation
R2	Os05g0392300	LOC_Os05g32600	growth	The Rice Cyclin-Dependent Kinase -Activating Kinase R2 Regulates S-Phase Progression	Increasing R2 abundance through a transgenic approach accelerated S-phase progression and overall growth rate in suspension cells
R2	Os05g0392300	LOC_Os05g32600	growth	The Rice Cyclin-Dependent Kinase -Activating Kinase R2 Regulates S-Phase Progression	In planta, the CTD kinase activity of R2 was induced by a growth-promoting signal
RA1	Os06g0103600	LOC_Os06g01400	chloroplast	Rice albino 1, encoding a glycyl-tRNA synthetase, is involved in chloroplast development and establishment of the plastidic ribosome system in rice.	By transient expression in Nicotiana benthamiana, we found that RA1 protein was localized in the chloroplast
RA1	Os06g0103600	LOC_Os06g01400	chloroplast	Rice albino 1, encoding a glycyl-tRNA synthetase, is involved in chloroplast development and establishment of the plastidic ribosome system in rice.	RNA analysis revealed biogenesis of chloroplast rRNAs was abnormal in ra1
RA1	Os06g0103600	LOC_Os06g01400	chloroplast	Rice albino 1, encoding a glycyl-tRNA synthetase, is involved in chloroplast development and establishment of the plastidic ribosome system in rice.	These results suggest that RA1 is involved in early chloroplast development and establishment of the plastidic ribosome system in rice
RA1	Os06g0103600	LOC_Os06g01400	development	Rice albino 1, encoding a glycyl-tRNA synthetase, is involved in chloroplast development and establishment of the plastidic ribosome system in rice.	Expression levels of chlorophyll biosynthesis and plastid development related genes were disordered in the ra1 mutant
RA1	Os06g0103600	LOC_Os06g01400	development	Rice albino 1, encoding a glycyl-tRNA synthetase, is involved in chloroplast development and establishment of the plastidic ribosome system in rice.	These results suggest that RA1 is involved in early chloroplast development and establishment of the plastidic ribosome system in rice
RA1	Os06g0103600	LOC_Os06g01400	map-based cloning	Rice albino 1, encoding a glycyl-tRNA synthetase, is involved in chloroplast development and establishment of the plastidic ribosome system in rice.	Map-based cloning revealed that RA1 gene encodes a glycyl-tRNA synthetase (GlyRS), which was confirmed by genetic complementation and knockout by Crispr/Cas9 technology
RA1	Os06g0103600	LOC_Os06g01400	chloroplast development	Rice albino 1, encoding a glycyl-tRNA synthetase, is involved in chloroplast development and establishment of the plastidic ribosome system in rice.	These results suggest that RA1 is involved in early chloroplast development and establishment of the plastidic ribosome system in rice
RA8	Os09g0480900	LOC_Os09g30320	sterile	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.)	The RA8 promoter may be useful for controlling gene expression in anthers of cereal plants and for generating male-sterile plants
RA8	Os09g0480900	LOC_Os09g30320	anther	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.)	An anther-specific cDNA clone of rice, RA8, was isolated from an anther cDNA library by differential screening
RA8	Os09g0480900	LOC_Os09g30320	anther	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.)	RNA blot analysis indicated that the RA8 transcript is present specifically in anthers and the transcript level increased as flowers matured, reaching the highest level in mature flowers
RA8	Os09g0480900	LOC_Os09g30320	anther	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.)	Histochemical GUS analysis showed that the RA8 promoter was active in the tapetum, endothecium, and connective tissues of anthers
RA8	Os09g0480900	LOC_Os09g30320	anther	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.)	The RA8 promoter may be useful for controlling gene expression in anthers of cereal plants and for generating male-sterile plants
RA8	Os09g0480900	LOC_Os09g30320	anther	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.)	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.)
RA8	Os09g0480900	LOC_Os09g30320	tapetum	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.)	Histochemical GUS analysis showed that the RA8 promoter was active in the tapetum, endothecium, and connective tissues of anthers
RA8	Os09g0480900	LOC_Os09g30320	flower	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.)	RNA blot analysis indicated that the RA8 transcript is present specifically in anthers and the transcript level increased as flowers matured, reaching the highest level in mature flowers
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	drought	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	seed	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance	The Rab16A transcript also increased gradually with seed maturity, with its maximal accumulation at 30 d after pollination (DAP) i
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	seed	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance	, fully matured seeds, explaining the protective role of Rab16A gene during seed maturation
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	salt	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance	We report here the overexpression of Rab16A full length gene (promoter + ORF), from the salt-tolerant indica rice Pokkali, in the salt-susceptible indica rice variety Khitish, via particle bombardment
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	salt	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	salinity	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance	Enhanced tolerance to salinity was observed in the plants transformed with Rab16A
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	salinity	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance	All these results indicated that the overproduction of RAB16A protein in the transgenics enable them to display enhanced tolerance to salinity stress with improved physiological traits
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	salinity stress	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance	All these results indicated that the overproduction of RAB16A protein in the transgenics enable them to display enhanced tolerance to salinity stress with improved physiological traits
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	ABA	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
RAB21|Rab16A|OsRab16A	Os11g0454300	LOC_Os11g26790	salt tolerance	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance
RACK1B|OsWD40-122|OsRACK1B	Os05g0552300	LOC_Os05g47890	development	Receptor for Activated C Kinase1B (OsRACK1B) Impairs Fertility in Rice through NADPH-Dependent H(2)O(2) Signaling Pathway.	 Taken together, these data indicate that elevated OsRACK1B accumulates a threshold level of ROS, in this case H(2)O(2), which negatively regulates pollen development and fertility
RACK1B|OsWD40-122|OsRACK1B	Os05g0552300	LOC_Os05g47890	fertility	Receptor for Activated C Kinase1B (OsRACK1B) Impairs Fertility in Rice through NADPH-Dependent H(2)O(2) Signaling Pathway.	 Taken together, these data indicate that elevated OsRACK1B accumulates a threshold level of ROS, in this case H(2)O(2), which negatively regulates pollen development and fertility
RACK1B|OsWD40-122|OsRACK1B	Os05g0552300	LOC_Os05g47890	pollen	Receptor for Activated C Kinase1B (OsRACK1B) Impairs Fertility in Rice through NADPH-Dependent H(2)O(2) Signaling Pathway.	 Taken together, these data indicate that elevated OsRACK1B accumulates a threshold level of ROS, in this case H(2)O(2), which negatively regulates pollen development and fertility
RACK1B|OsWD40-122|OsRACK1B	Os05g0552300	LOC_Os05g47890	pollen development	Receptor for Activated C Kinase1B (OsRACK1B) Impairs Fertility in Rice through NADPH-Dependent H(2)O(2) Signaling Pathway.	 Taken together, these data indicate that elevated OsRACK1B accumulates a threshold level of ROS, in this case H(2)O(2), which negatively regulates pollen development and fertility
RAD51C	Os01g0578000	LOC_Os01g39630	meiosis	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	These results suggest that RAD51C is essential for reproductive development by regulating meiosis as well as for DNA damage repair in somatic cells
RAD51C	Os01g0578000	LOC_Os01g39630	meiosis	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells
RAD51C	Os01g0578000	LOC_Os01g39630	fertility	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	Transferring RAD51C to the RAD51C-KO line restored fertility
RAD51C	Os01g0578000	LOC_Os01g39630	reproductive	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	These results suggest that RAD51C is essential for reproductive development by regulating meiosis as well as for DNA damage repair in somatic cells
RAD51C	Os01g0578000	LOC_Os01g39630	anther	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	The RAD51C-KO line showed no obvious difference from wild-type plants in mitosis in the anther wall cells, which was consistent with the observation that the RAD51C-KO line did not have obviously abnormal morphology during vegetative development
RAD51C	Os01g0578000	LOC_Os01g39630	mitosis	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	The RAD51C-KO line showed no obvious difference from wild-type plants in mitosis in the anther wall cells, which was consistent with the observation that the RAD51C-KO line did not have obviously abnormal morphology during vegetative development
RAD51C	Os01g0578000	LOC_Os01g39630	pollen	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	Cytological analyses showed that the sterility of RAD51C-KO plants was associated with abnormal early meiotic processes in both megasporocytes and pollen mother cells (PMCs)
RAD51C	Os01g0578000	LOC_Os01g39630	meiotic	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	Cytological analyses showed that the sterility of RAD51C-KO plants was associated with abnormal early meiotic processes in both megasporocytes and pollen mother cells (PMCs)
RAD51C	Os01g0578000	LOC_Os01g39630	vegetative	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	The RAD51C-KO line showed no obvious difference from wild-type plants in mitosis in the anther wall cells, which was consistent with the observation that the RAD51C-KO line did not have obviously abnormal morphology during vegetative development
RAD51C	Os01g0578000	LOC_Os01g39630	sterility	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	Knockout (KO) of RAD51C resulted in both female and male sterility in rice
RAD51C	Os01g0578000	LOC_Os01g39630	sterility	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	Cytological analyses showed that the sterility of RAD51C-KO plants was associated with abnormal early meiotic processes in both megasporocytes and pollen mother cells (PMCs)
RAE3	Os06g0695900	LOC_Os06g48065	development	Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication.	 Identification of RAE3 sheds light on the molecular mechanism underlying awn development and provides an example of how selection on different genes can confer the same domestication phenotype in Asian and African rice
RAE3	Os06g0695900	LOC_Os06g48065	domestication	Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication.	 Identification of RAE3 sheds light on the molecular mechanism underlying awn development and provides an example of how selection on different genes can confer the same domestication phenotype in Asian and African rice
RAE3	Os06g0695900	LOC_Os06g48065	awn	Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication.	 A 48-bp deletion may disrupt the substrate recognition domain in RAE3 and diminish awn elongation
RAE3	Os06g0695900	LOC_Os06g48065	awn	Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication.	 Identification of RAE3 sheds light on the molecular mechanism underlying awn development and provides an example of how selection on different genes can confer the same domestication phenotype in Asian and African rice
RAE3	Os06g0695900	LOC_Os06g48065	 awn 	Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication.	 A 48-bp deletion may disrupt the substrate recognition domain in RAE3 and diminish awn elongation
RAE3	Os06g0695900	LOC_Os06g48065	 awn 	Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication.	 Identification of RAE3 sheds light on the molecular mechanism underlying awn development and provides an example of how selection on different genes can confer the same domestication phenotype in Asian and African rice
RAG2	Os07g0214300	LOC_Os07g11380	grain	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.
RAG2	Os07g0214300	LOC_Os07g11380	grain	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	Overexpression of RAG2 significantly increased grain size and improved grain quality and yield simultaneously
RAG2	Os07g0214300	LOC_Os07g11380	grain	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	These results imply that RAG2 might play an important role in regulating grain weight and seed quality in rice
RAG2	Os07g0214300	LOC_Os07g11380	grain	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	The functional characterization of rice RAG2 facilitates a further understanding of the mechanisms involved in grain size and seed quality, and may be helpful for improving grain yield and quantity in cereal crops
RAG2	Os07g0214300	LOC_Os07g11380	seed	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	RAG2 is a member of 14-16 kDa α-amylase/trypsin inhibitors in rice, which belong to the albumin of seed storage proteins
RAG2	Os07g0214300	LOC_Os07g11380	seed	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	We found that RAG2 was specifically expressed in ripening seed and its transcription peak was between 14 and 21 days after flowering
RAG2	Os07g0214300	LOC_Os07g11380	seed	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	These results imply that RAG2 might play an important role in regulating grain weight and seed quality in rice
RAG2	Os07g0214300	LOC_Os07g11380	seed	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	The functional characterization of rice RAG2 facilitates a further understanding of the mechanisms involved in grain size and seed quality, and may be helpful for improving grain yield and quantity in cereal crops
RAG2	Os07g0214300	LOC_Os07g11380	grain yield	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.
RAG2	Os07g0214300	LOC_Os07g11380	grain yield	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	The functional characterization of rice RAG2 facilitates a further understanding of the mechanisms involved in grain size and seed quality, and may be helpful for improving grain yield and quantity in cereal crops
RAG2	Os07g0214300	LOC_Os07g11380	yield	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.
RAG2	Os07g0214300	LOC_Os07g11380	yield	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	Overexpression of RAG2 significantly increased grain size and improved grain quality and yield simultaneously
RAG2	Os07g0214300	LOC_Os07g11380	yield	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	The functional characterization of rice RAG2 facilitates a further understanding of the mechanisms involved in grain size and seed quality, and may be helpful for improving grain yield and quantity in cereal crops
RAG2	Os07g0214300	LOC_Os07g11380	grain size	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	Overexpression of RAG2 significantly increased grain size and improved grain quality and yield simultaneously
RAG2	Os07g0214300	LOC_Os07g11380	grain size	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	The functional characterization of rice RAG2 facilitates a further understanding of the mechanisms involved in grain size and seed quality, and may be helpful for improving grain yield and quantity in cereal crops
RAG2	Os07g0214300	LOC_Os07g11380	grain weight	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	These results imply that RAG2 might play an important role in regulating grain weight and seed quality in rice
RAG2	Os07g0214300	LOC_Os07g11380	quality	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.
RAG2	Os07g0214300	LOC_Os07g11380	quality	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	Overexpression of RAG2 significantly increased grain size and improved grain quality and yield simultaneously
RAG2	Os07g0214300	LOC_Os07g11380	quality	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	These results imply that RAG2 might play an important role in regulating grain weight and seed quality in rice
RAG2	Os07g0214300	LOC_Os07g11380	albumin	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	RAG2 is a member of 14-16 kDa α-amylase/trypsin inhibitors in rice, which belong to the albumin of seed storage proteins
RAG2	Os07g0214300	LOC_Os07g11380	grain quality	Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality in rice.	Overexpression of RAG2 significantly increased grain size and improved grain quality and yield simultaneously
RAI1	Os03g0135700	LOC_Os03g04310	transcription factor	The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity	RAI1 encodes a putative basic helix-loop-helix transcription factor
RAI1	Os03g0135700	LOC_Os03g04310	transcription factor	The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity	In this study, we have identified RAI1 as the first transcription factor acting downstream of OsRac1
RAI1	Os03g0135700	LOC_Os03g04310	blast	The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity	The PAL1 and OsWRKY19 genes were also up-regulated by sphingolipid and chitin elicitors, and the RAI1 activation-tagged plants had increased resistance to a rice blast fungus
RAI1	Os03g0135700	LOC_Os03g04310	defense response	The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity	These results indicated that RAI1 is involved in defense responses in rice
RAI1	Os03g0135700	LOC_Os03g04310	defense	The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity	These results indicated that RAI1 is involved in defense responses in rice
RAI1	Os03g0135700	LOC_Os03g04310	blast	The OsSPK1-OsRac1-RAI1 defense signaling pathway is shared by two distantly related NLR proteins in rice blast resistance.	In addition, we observed changes in RAI1 levels during blast infection, which led to identification of OsRPT2a, a subunit of the 19S regulatory particle of the 26S proteasome
RAMY	Os01g0256500	LOC_Os01g15270	root	A new rice zinc-finger protein binds to the O2S box of the alpha-amylase gene promoter	Low levels of RAMY mRNAs were detected in rice leaves and roots by Northern blot hybridization
RAMY	Os01g0256500	LOC_Os01g15270	gibberellin	A new rice zinc-finger protein binds to the O2S box of the alpha-amylase gene promoter	The plant hormone gibberellin (GA) induces expression of both RAMY and Amy2 genes, as performed by Northern blot hybridization, but the increase in RAMY mRNA level occurs prior to that of the Amy2 mRNA level in the GA-treated aleurone tissues
RAMY	Os01g0256500	LOC_Os01g15270	transcription factor	A new rice zinc-finger protein binds to the O2S box of the alpha-amylase gene promoter	A putative transcription factor, named RAMY, that binds to the 20-bp O2S sequences of the regulatory region of the Amy2 gene promoter has been identified using the yeast one-hybrid system from a rice library
RAN1	Os01g0611100	None	resistance	RAN1 is involved in plant cold resistance and development in rice (Oryza sativa).	RAN1 is involved in plant cold resistance and development in rice (Oryza sativa).
RAN1	Os01g0611100	None	development	RAN1 is involved in plant cold resistance and development in rice (Oryza sativa).	RAN1 is involved in plant cold resistance and development in rice (Oryza sativa).
RASI	Os04g0526600	LOC_Os04g44470	insect	Rice bifunctional alpha-amylase/subtilisin inhibitoe: cloning and characterization of the recombinant inhibitor expressed in Escherichia coli	The recombinant inhibitor had strong inhibitory activity toward subtilisin, with an equimolar relationship, comparable with that of native RASI, and weak inhibitory activity toward some microbial alpha-amylases, but not toward animal or insect alpha-amylases
RASI	Os04g0526600	LOC_Os04g44470	seed	Rice bifunctional alpha-amylase/subtilisin inhibitoe: cloning and characterization of the recombinant inhibitor expressed in Escherichia coli	RASI was found to be expressed only in seeds, suggesting that it has a seed-specific function
RASI	Os04g0526600	LOC_Os04g44470	seed	Rice bifunctional alpha-amylase/subtilisin inhibitoe: cloning and characterization of the recombinant inhibitor expressed in Escherichia coli	These results suggest that RASI might function in the defense of the seed against microorganisms
RASI	Os04g0526600	LOC_Os04g44470	defense	Rice bifunctional alpha-amylase/subtilisin inhibitoe: cloning and characterization of the recombinant inhibitor expressed in Escherichia coli	These results suggest that RASI might function in the defense of the seed against microorganisms
RAV6	Os02g0683500	LOC_Os02g45850	leaf	Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.	Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.
RAV6	Os02g0683500	LOC_Os02g45850	leaf	Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.	This indicates that RAV6 affects rice leaf angle by modulating BR homeostasis and demonstrates an essential regulatory role of epigenetic modification on a key gene controlling important agricultural traits
RAV6	Os02g0683500	LOC_Os02g45850	seed	Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.	Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.
RAV6	Os02g0683500	LOC_Os02g45850	homeostasis	Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.	This indicates that RAV6 affects rice leaf angle by modulating BR homeostasis and demonstrates an essential regulatory role of epigenetic modification on a key gene controlling important agricultural traits
RAV6	Os02g0683500	LOC_Os02g45850	BR	Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.	This indicates that RAV6 affects rice leaf angle by modulating BR homeostasis and demonstrates an essential regulatory role of epigenetic modification on a key gene controlling important agricultural traits
RAV6	Os02g0683500	LOC_Os02g45850	seed size	Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.	Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.
RAVL1	Os04g0581400	LOC_Os04g49230	BR signaling	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	Genetic evidence is presented to strengthen the observation that the primary action of RAVL1 mediates the expression of genes involved in BR signaling and biosynthesis
RAVL1	Os04g0581400	LOC_Os04g49230	homeostasis	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	Also, RAVL1 is necessary for the response of these genes to changes in cellular BR homeostasis
RAVL1	Os04g0581400	LOC_Os04g49230	homeostasis	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	This study thus describes a regulatory circuit modulating the homeostasis of BR in which RAVL1 ensures the basal activity of both the signaling and the biosynthetic pathways
RAVL1	Os04g0581400	LOC_Os04g49230	BR	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	This report shows that RAVL1 regulates the expression of the BR receptor
RAVL1	Os04g0581400	LOC_Os04g49230	BR	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	Furthermore, RAVL1 is also required for the expression of the BR biosynthetic genes D2, D11, and BRD1 that are subject to BR negative feedback
RAVL1	Os04g0581400	LOC_Os04g49230	BR	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	Also, RAVL1 is necessary for the response of these genes to changes in cellular BR homeostasis
RAVL1	Os04g0581400	LOC_Os04g49230	BR	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	Genetic evidence is presented to strengthen the observation that the primary action of RAVL1 mediates the expression of genes involved in BR signaling and biosynthesis
RAVL1	Os04g0581400	LOC_Os04g49230	BR	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice	This study thus describes a regulatory circuit modulating the homeostasis of BR in which RAVL1 ensures the basal activity of both the signaling and the biosynthetic pathways
RAVL1	Os04g0581400	LOC_Os04g49230	root	Related to ABI3/VP1-Like 1 (RAVL1) regulates brassinosteroid-mediated activation of AMT1;2 in rice (Oryza sativa).	Moreover, (15)NH4(+) uptake, cellular ammonium contents, and root responses to methyl-ammonium strongly depended on RAVL1 levels
RAVL1	Os04g0581400	LOC_Os04g49230	sheath	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.
RAVL1	Os04g0581400	LOC_Os04g49230	sheath	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Mutants d61-1 and d2 were less susceptible to sheath blight disease, bri1-D was more susceptible, and ravl1 and d61-1/EIL1 Ri5 were similarly susceptible compared to WT
RAVL1	Os04g0581400	LOC_Os04g49230	sheath	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Mutants ers1 and d61-1/RAVL1 OX were resistant to sheath blight disease, whereas EIL1 RNAi mutants and RAVL1 OX were more susceptible than WT
RAVL1	Os04g0581400	LOC_Os04g49230	sheath	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Our analyses provide information on how BR and ethylene signaling regulate sheath blight disease and on the regulatory function of RAVL1 in rice sheath blight disease
RAVL1	Os04g0581400	LOC_Os04g49230	ethylene	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.
RAVL1	Os04g0581400	LOC_Os04g49230	ethylene	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Transcriptome analysis, ChIP, EMSA, and transient assays indicted that RAVL1 might directly activate Ethylene insensitive 3-like 1 (EIL1), a master regulator of ethylene signaling
RAVL1	Os04g0581400	LOC_Os04g49230	ethylene	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	BRI1 and D2 expression in EIL1 Ri5/RAVL1 OX and EIL1 expression in d61-1/RAVL1 OX, indicated that RAVL1 activates BRI1/D2 and EIL1, respectively, independent of BR and ethylene signaling
RAVL1	Os04g0581400	LOC_Os04g49230	ethylene	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Our analyses provide information on how BR and ethylene signaling regulate sheath blight disease and on the regulatory function of RAVL1 in rice sheath blight disease
RAVL1	Os04g0581400	LOC_Os04g49230	disease	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.
RAVL1	Os04g0581400	LOC_Os04g49230	disease	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Our analyses provide information on how BR and ethylene signaling regulate sheath blight disease and on the regulatory function of RAVL1 in rice sheath blight disease
RAVL1	Os04g0581400	LOC_Os04g49230	BR	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	BRI1 and D2 expression in EIL1 Ri5/RAVL1 OX and EIL1 expression in d61-1/RAVL1 OX, indicated that RAVL1 activates BRI1/D2 and EIL1, respectively, independent of BR and ethylene signaling
RAVL1	Os04g0581400	LOC_Os04g49230	BR	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Our analyses provide information on how BR and ethylene signaling regulate sheath blight disease and on the regulatory function of RAVL1 in rice sheath blight disease
RAVL1	Os04g0581400	LOC_Os04g49230	blight	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.
RAVL1	Os04g0581400	LOC_Os04g49230	blight	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Mutants d61-1 and d2 were less susceptible to sheath blight disease, bri1-D was more susceptible, and ravl1 and d61-1/EIL1 Ri5 were similarly susceptible compared to WT
RAVL1	Os04g0581400	LOC_Os04g49230	blight	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Mutants ers1 and d61-1/RAVL1 OX were resistant to sheath blight disease, whereas EIL1 RNAi mutants and RAVL1 OX were more susceptible than WT
RAVL1	Os04g0581400	LOC_Os04g49230	blight	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Our analyses provide information on how BR and ethylene signaling regulate sheath blight disease and on the regulatory function of RAVL1 in rice sheath blight disease
RAVL1	Os04g0581400	LOC_Os04g49230	resistant	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Mutants ers1 and d61-1/RAVL1 OX were resistant to sheath blight disease, whereas EIL1 RNAi mutants and RAVL1 OX were more susceptible than WT
RAVL1	Os04g0581400	LOC_Os04g49230	blight disease	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.
RAVL1	Os04g0581400	LOC_Os04g49230	blight disease	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Mutants d61-1 and d2 were less susceptible to sheath blight disease, bri1-D was more susceptible, and ravl1 and d61-1/EIL1 Ri5 were similarly susceptible compared to WT
RAVL1	Os04g0581400	LOC_Os04g49230	blight disease	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Mutants ers1 and d61-1/RAVL1 OX were resistant to sheath blight disease, whereas EIL1 RNAi mutants and RAVL1 OX were more susceptible than WT
RAVL1	Os04g0581400	LOC_Os04g49230	blight disease	RAVL1 activates brassinosteroids and ethylene signaling to modulate response to sheath blight disease in rice.	Our analyses provide information on how BR and ethylene signaling regulate sheath blight disease and on the regulatory function of RAVL1 in rice sheath blight disease
Rb1	Os01g0576100	LOC_Os01g39480	leaf	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.
Rb1	Os01g0576100	LOC_Os01g39480	grain	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.	However, overexpression of Rb1 and Rb2 sharply decreased grain filling
Rb1	Os01g0576100	LOC_Os01g39480	sheath	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.
Rb1	Os01g0576100	LOC_Os01g39480	map-based cloning	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.	Map-based cloning and transformation assays further divided PSH1 as two tightly linked bHLH genes, Rb1 and Rb2
Rb1	Os01g0576100	LOC_Os01g39480	grain filling	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.	However, overexpression of Rb1 and Rb2 sharply decreased grain filling
RBG1	Os11g0497350	LOC_Os11g30430	root	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 also increases auxin accumulation and sensitivity, which facilitates root development, particularly crown roots
RBG1	Os11g0497350	LOC_Os11g30430	auxin	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 also increases auxin accumulation and sensitivity, which facilitates root development, particularly crown roots
RBG1	Os11g0497350	LOC_Os11g30430	auxin	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Taken together, we have discovered that RBG1 regulates two distinct and important traits in rice, namely grain yield and stress tolerance, via its effects on cell division, auxin and stress protein induction
RBG1	Os11g0497350	LOC_Os11g30430	grain	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 regulated by a specific constitutive promoter, GOS2, enhanced harvest index and grain yield in rice
RBG1	Os11g0497350	LOC_Os11g30430	grain	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Taken together, we have discovered that RBG1 regulates two distinct and important traits in rice, namely grain yield and stress tolerance, via its effects on cell division, auxin and stress protein induction
RBG1	Os11g0497350	LOC_Os11g30430	salt	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Moreover, overexpression of RBG1 upregulated a large number of heat shock proteins, leading to enhanced tolerance to heat, osmotic and salt stresses, as well as rapid recovery from water-deficit stress
RBG1	Os11g0497350	LOC_Os11g30430	tolerance	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Moreover, overexpression of RBG1 upregulated a large number of heat shock proteins, leading to enhanced tolerance to heat, osmotic and salt stresses, as well as rapid recovery from water-deficit stress
RBG1	Os11g0497350	LOC_Os11g30430	grain yield	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 regulated by a specific constitutive promoter, GOS2, enhanced harvest index and grain yield in rice
RBG1	Os11g0497350	LOC_Os11g30430	grain yield	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Taken together, we have discovered that RBG1 regulates two distinct and important traits in rice, namely grain yield and stress tolerance, via its effects on cell division, auxin and stress protein induction
RBG1	Os11g0497350	LOC_Os11g30430	yield	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 regulated by a specific constitutive promoter, GOS2, enhanced harvest index and grain yield in rice
RBG1	Os11g0497350	LOC_Os11g30430	yield	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Taken together, we have discovered that RBG1 regulates two distinct and important traits in rice, namely grain yield and stress tolerance, via its effects on cell division, auxin and stress protein induction
RBG1	Os11g0497350	LOC_Os11g30430	cell division	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 promotes cell division, and RBG1 co-localizes with microtubules known to be involved in cell division, which may account for the increase in organ size
RBG1	Os11g0497350	LOC_Os11g30430	cell division	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Taken together, we have discovered that RBG1 regulates two distinct and important traits in rice, namely grain yield and stress tolerance, via its effects on cell division, auxin and stress protein induction
RBG1	Os11g0497350	LOC_Os11g30430	root development	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 also increases auxin accumulation and sensitivity, which facilitates root development, particularly crown roots
RBG1	Os11g0497350	LOC_Os11g30430	salt stress	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Moreover, overexpression of RBG1 upregulated a large number of heat shock proteins, leading to enhanced tolerance to heat, osmotic and salt stresses, as well as rapid recovery from water-deficit stress
RBG1	Os11g0497350	LOC_Os11g30430	stress	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Moreover, overexpression of RBG1 upregulated a large number of heat shock proteins, leading to enhanced tolerance to heat, osmotic and salt stresses, as well as rapid recovery from water-deficit stress
RBG1	Os11g0497350	LOC_Os11g30430	stress	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Taken together, we have discovered that RBG1 regulates two distinct and important traits in rice, namely grain yield and stress tolerance, via its effects on cell division, auxin and stress protein induction
RBG1	Os11g0497350	LOC_Os11g30430	crown	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 also increases auxin accumulation and sensitivity, which facilitates root development, particularly crown roots
RBG1	Os11g0497350	LOC_Os11g30430	crown root	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 also increases auxin accumulation and sensitivity, which facilitates root development, particularly crown roots
RBG1	Os11g0497350	LOC_Os11g30430	organ size	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Ectopic expression of RBG1 promotes cell division, and RBG1 co-localizes with microtubules known to be involved in cell division, which may account for the increase in organ size
RBG1	Os11g0497350	LOC_Os11g30430	stress tolerance	Rice Big Grain 1<U+00A0>promotes cell division to enhance organ development, stress tolerance and grain yield.	Taken together, we have discovered that RBG1 regulates two distinct and important traits in rice, namely grain yield and stress tolerance, via its effects on cell division, auxin and stress protein induction
RBP-L	Os04g0625800	LOC_Os04g53440	transcription factor	Targeted Endoplasmic Reticulum Localization of Storage Protein mRNAs Requires the RNA-Binding Protein RBP-L.	Transcriptome analysis showed that RBP-L knockdown greatly affected the expression of prolamine family genes and several classes of transcription factors
RBP-L	Os04g0625800	LOC_Os04g53440	transcription factor	Targeted Endoplasmic Reticulum Localization of Storage Protein mRNAs Requires the RNA-Binding Protein RBP-L.	Moreover, distinct from RBP-P, RBP-L exhibits additional regulatory roles in development, either directly through its binding to corresponding RNAs or indirectly through its effect on transcription factors
RBP-L	Os04g0625800	LOC_Os04g53440	growth	Targeted Endoplasmic Reticulum Localization of Storage Protein mRNAs Requires the RNA-Binding Protein RBP-L.	Reduced amounts of RBP-L caused partial mislocalization of glutelin and prolamine RNAs and conferred other general growth defects, including dwarfism, late flowering, and smaller seeds
RBP-L	Os04g0625800	LOC_Os04g53440	glutelin	Targeted Endoplasmic Reticulum Localization of Storage Protein mRNAs Requires the RNA-Binding Protein RBP-L.	Reduced amounts of RBP-L caused partial mislocalization of glutelin and prolamine RNAs and conferred other general growth defects, including dwarfism, late flowering, and smaller seeds
RBP-P	Os01g0265800	LOC_Os01g16090	growth	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	Overall, our data demonstrate the significant roles of RBP-P in glutelin and prolamine mRNA localization and in the regulation of genes important for plant growth and development through its RNA binding activity and cooperative regulation with interacting proteins
RBP-P	Os01g0265800	LOC_Os01g16090	spikelet	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	In addition, partial loss of RBP-P function conferred a broad phenotypic variation ranging from dwarfism, chlorophyll deficiency and sterility to late flowering and low spikelet fertility
RBP-P	Os01g0265800	LOC_Os01g16090	grain	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	Transcriptome analysis highlighted the essential role of RBP-P in regulating storage protein genes and several essential biological processes during grain development
RBP-P	Os01g0265800	LOC_Os01g16090	sterility	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	In addition, partial loss of RBP-P function conferred a broad phenotypic variation ranging from dwarfism, chlorophyll deficiency and sterility to late flowering and low spikelet fertility
RBP-P	Os01g0265800	LOC_Os01g16090	development	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	Transcriptome analysis highlighted the essential role of RBP-P in regulating storage protein genes and several essential biological processes during grain development
RBP-P	Os01g0265800	LOC_Os01g16090	development	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	Overall, our data demonstrate the significant roles of RBP-P in glutelin and prolamine mRNA localization and in the regulation of genes important for plant growth and development through its RNA binding activity and cooperative regulation with interacting proteins
RBP-P	Os01g0265800	LOC_Os01g16090	endosperm	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.
RBP-P	Os01g0265800	LOC_Os01g16090	R protein	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	Different mutant RBP-P proteins exhibited varying degrees of reduced RNA binding and/or protein-protein interaction properties, which may account for the mis-localization of storage protein RNAs
RBP-P	Os01g0265800	LOC_Os01g16090	fertility	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	In addition, partial loss of RBP-P function conferred a broad phenotypic variation ranging from dwarfism, chlorophyll deficiency and sterility to late flowering and low spikelet fertility
RBP-P	Os01g0265800	LOC_Os01g16090	plant growth	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	Overall, our data demonstrate the significant roles of RBP-P in glutelin and prolamine mRNA localization and in the regulation of genes important for plant growth and development through its RNA binding activity and cooperative regulation with interacting proteins
RBP-P	Os01g0265800	LOC_Os01g16090	glutelin	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.
RBP-P	Os01g0265800	LOC_Os01g16090	glutelin	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	RNA-binding protein RBP-P binds to both glutelin and prolamine mRNAs, suggesting a role in some aspect of their RNA metabolism
RBP-P	Os01g0265800	LOC_Os01g16090	glutelin	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	Here, we show that rice lines expressing mutant RBP-P mis-localize both glutelin and prolamine mRNAs
RBP-P	Os01g0265800	LOC_Os01g16090	glutelin	RNA-binding protein RBP-P is required for glutelin and prolamine mRNA localization in rice endosperm cells.	Overall, our data demonstrate the significant roles of RBP-P in glutelin and prolamine mRNA localization and in the regulation of genes important for plant growth and development through its RNA binding activity and cooperative regulation with interacting proteins
RBS1	Os11g0250000	LOC_Os11g14430	flowering time	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	In this study, we characterized the function of the RNA-binding and SPIN1-interacting 1 (RBS1) protein in flowering time regulation
RBS1	Os11g0250000	LOC_Os11g14430	flowering time	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	These results suggest that RBS1 is a new negative regulator of flowering time that itself is positively regulated by SPIN1 but negatively regulated by SPL11 in rice
RBS1	Os11g0250000	LOC_Os11g14430	flowering time	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice
RBS1	Os11g0250000	LOC_Os11g14430	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	In this study, we characterized the function of the RNA-binding and SPIN1-interacting 1 (RBS1) protein in flowering time regulation
RBS1	Os11g0250000	LOC_Os11g14430	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	Rbs1 overexpression causes delayed flowering under SD and LD conditions in rice
RBS1	Os11g0250000	LOC_Os11g14430	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	Expression analyses of flowering marker genes show that Rbs1 overexpression represses the expression of Hd3a under SD and LD conditions
RBS1	Os11g0250000	LOC_Os11g14430	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	These results suggest that RBS1 is a new negative regulator of flowering time that itself is positively regulated by SPIN1 but negatively regulated by SPL11 in rice
RBS1	Os11g0250000	LOC_Os11g14430	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	dormancy	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	transcription factor	Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice	This research delimited qSD7-1/qPC7 to the Os07g11020 or Rc locus encoding a basic helix-loop-helix family transcription factor by intragenic recombinants and provided unambiguous evidence that the association arises from pleiotropy
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	shattering	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The breaking tensile strength (BTS) of the grain pedicel was measured using a digital force gauge to evaluate the degree of shattering of rice varieties at 5, 10, 15, 20, 25, 30, 35, and 40 days after heading (DAH)
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	shattering	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	domestication	Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice	Rc is a domestication-related gene required for red pericarp in rice (Oryza sativa)
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice	The association was linked to qSD7-1/qPC7, a cluster of quantitative trait loci for seed dormancy/pericarp color in weedy red rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars	Here, we examined three more FNPs in two domestication-related genes involved in pigment synthesis during the development of seed pericarp color (Rc and Rd) in 91 landraces (and some modern cultivars) of japonica rice collected from throughout the area of distribution of rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g	The Rc locus regulates pigmentation of the rice bran layer, and selection for the rc allele (white pericarp) occurred during domestication of the crop
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g	A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	dormancy	Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice	The association was linked to qSD7-1/qPC7, a cluster of quantitative trait loci for seed dormancy/pericarp color in weedy red rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp	Brown-colored seeds were obtained from transgenic plants by the introduction of a gene containing the basic helix-loop-helix (bHLH) motif, demonstrating that the Rc gene encodes a bHLH protein
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene	In some cases, white pericarps in African rice are apparently caused by unique mutations at the Rc gene, which also controls pericarp colour variation in Asian rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene	The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	dormancy	Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice	The dormancy effect could be eliminated by a heat treatment, but could not be completely overcome by gibberellic acid or physical removal of the seed maternal tissues
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	Global dissemination of a single mutation conferring white pericarp in rice	A little less than one Mb of japonica DNA hitchhiked with the rc allele into most indica varieties, suggesting that other linked domestication alleles may have been transferred from japonica to indica along with white pericarp color
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	domestication	Global dissemination of a single mutation conferring white pericarp in rice	A little less than one Mb of japonica DNA hitchhiked with the rc allele into most indica varieties, suggesting that other linked domestication alleles may have been transferred from japonica to indica along with white pericarp color
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g	By sequencing the Rc locus in plants derived from red seeds, and linkage analysis in a segregating population, we were able to demonstrate that mutation within rc resulted in the new, dominant, wild-type allele Rc-g
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars	Here, we examined three more FNPs in two domestication-related genes involved in pigment synthesis during the development of seed pericarp color (Rc and Rd) in 91 landraces (and some modern cultivars) of japonica rice collected from throughout the area of distribution of rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	domestication	A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g	The Rc locus regulates pigmentation of the rice bran layer, and selection for the rc allele (white pericarp) occurred during domestication of the crop
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	grain	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The breaking tensile strength (BTS) of the grain pedicel was measured using a digital force gauge to evaluate the degree of shattering of rice varieties at 5, 10, 15, 20, 25, 30, 35, and 40 days after heading (DAH)
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	grain	Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice	RT-PCR experiments confirmed that the Rc gene was expressed in both red- and white-grained rice but that a shortened transcript was present in white varieties
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice	The association was linked to qSD7-1/qPC7, a cluster of quantitative trait loci for seed dormancy/pericarp color in weedy red rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp	The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice	The dormancy effect could be eliminated by a heat treatment, but could not be completely overcome by gibberellic acid or physical removal of the seed maternal tissues
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	domestication	Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars	Here, we examined three more FNPs in two domestication-related genes involved in pigment synthesis during the development of seed pericarp color (Rc and Rd) in 91 landraces (and some modern cultivars) of japonica rice collected from throughout the area of distribution of rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	domestication	Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars	In this model, the critical role of the Rc FNP at an early step of the domestication process was highlighted
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	domestication	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes	The locus sh-h for shattering was tightly linked to the Rc locus conferring red pericarp, as well as a QTL qSD(s)-7-1 for seed dormancy, implying that this region might represent a domestication block in the evolutionary pathway of rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	Global dissemination of a single mutation conferring white pericarp in rice	Here we report that the change from the red seeds of wild rice to the white seeds of cultivated rice (Oryza sativa) resulted from the strong selective sweep of a single mutation, a frame-shift deletion within the Rc gene that is found in 97
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice	Rc is a domestication-related gene required for red pericarp in rice (Oryza sativa)
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice	Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	CRISPR/Cas9-mediated functional recovery of the recessive rc allele to develop red rice.	 The RcRd genotype produces red pericarp in wild species Oryza rufipogon, whereas most cultivated rice varieties produce white grains resulted from a 14-bp frame-shift deletion in the seventh exon of the Rc gene
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	CRISPR/Cas9-mediated functional recovery of the recessive rc allele to develop red rice.	 In the present study, we developed a CRISPR/Cas9-mediated method to functionally restore the recessive rc allele through reverting the 14-bp frame-shift deletion to in-frame mutations in which the deletions were in multiples of three bases, and successfully converted three elite white pericarp rice varieties into red ones
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	transcription factor	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	tolerance	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	 To identify this association's molecular mechanism, a PHS mutant Osviviparous1 (Osvp1) was characterized in rice and crossed with Kasalath, a red pericarp cultivar with Rc (red coleoptiles) genotype
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	pericarp	Transcription Factors Rc and OsVP 1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice	 Moreover, OsVP1 can directly bind Rc (bHLH) promoter by yeast one-hybrid, which activates Rc and OsLAR expression in red pericarp rice
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	Explore the genetics of weedy traits using rice 3K database	 SNPs located in or close to Rc were particularly predictive of the occurrence of seed coat color and our results showed that different sub-populations required different SNPs for a better seed coat color prediction
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	transcription factor	Identification of the rice Rc gene as a main regulator of seed survival under dry storage conditions.	 The significant single nucleotide polymorphism in the most prominent region was located within the Rc gene, encoding a basic helix-loop-helix transcription factor
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	Identification of the rice Rc gene as a main regulator of seed survival under dry storage conditions.	Identification of the rice Rc gene as a main regulator of seed survival under dry storage conditions.
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	seed	Identification of the rice Rc gene as a main regulator of seed survival under dry storage conditions.	 In the seed pericarp, a functional Rc gene results in accumulation of proanthocyanidins, an important sub-class of flavonoids having strong antioxidant activity, which may explain the variation in tolerance to dry EPPO aging
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	tolerance	Identification of the rice Rc gene as a main regulator of seed survival under dry storage conditions.	 Storage experiments using near-isogenic rice lines (SD7-1D (Rc) and SD7-1d (rc) with the same allelic variation confirmed the role of the wildtype Rc gene, providing stronger tolerance to dry EPPO aging
Rc|qSD7-1|qPC7	Os07g0211500	LOC_Os07g11020	tolerance	Identification of the rice Rc gene as a main regulator of seed survival under dry storage conditions.	 In the seed pericarp, a functional Rc gene results in accumulation of proanthocyanidins, an important sub-class of flavonoids having strong antioxidant activity, which may explain the variation in tolerance to dry EPPO aging
RC24	Os06g0726200	LOC_Os06g51060	root	Regulation, expression and function of a new basic chitinase gene in rice (Oryza sativa L.)	A basal level of RC24 transcripts was detected in rice root and stem tissues, but not in leaf tissues
RC24	Os06g0726200	LOC_Os06g51060	stem	Regulation, expression and function of a new basic chitinase gene in rice (Oryza sativa L.)	A basal level of RC24 transcripts was detected in rice root and stem tissues, but not in leaf tissues
RC24	Os06g0726200	LOC_Os06g51060	growth	Regulation, expression and function of a new basic chitinase gene in rice (Oryza sativa L.)	RC24 protein expressed in Escherichia coli exhibited chitinase activity and strongly inhibited bacterial growth
RC24	Os06g0726200	LOC_Os06g51060	leaf	Regulation, expression and function of a new basic chitinase gene in rice (Oryza sativa L.)	A basal level of RC24 transcripts was detected in rice root and stem tissues, but not in leaf tissues
RC24	Os06g0726200	LOC_Os06g51060	leaf	Regulation, expression and function of a new basic chitinase gene in rice (Oryza sativa L.)	RC24 transcript accumulation was also observed in intact leaf tissues upon wounding, Transgenic rice plants containing the RC24/GUS gene fusion further confirmed that the RC24 gene showed a tissue-specific expression pattern and that transcription of the RC24 propmoter was sensitively and rapidly activated by wounding
RCc3	Os02g0662000	LOC_Os02g44310	root	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.
RCc3	Os02g0662000	LOC_Os02g44310	root	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	In this study, we investigated the biological role of the rice root-specific gene RCc3 in improving root growth and responses to abiotic stress by overexpressing RCc3 in rice plants
RCc3	Os02g0662000	LOC_Os02g44310	root	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	RCc3 overexpression produced pleiotropic phenotypes of improved root system architecture, including increased growth of primary root, adventitious roots and lateral roots at the seedling stage
RCc3	Os02g0662000	LOC_Os02g44310	root	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Further study indicated that auxin accumulation in the root was increased through auxin local biosynthesis and polar auxin transport in RCc3 overexpression lines
RCc3	Os02g0662000	LOC_Os02g44310	root	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Under osmotic and heat stress conditions, the root and shoot growth were less severely inhibited in RCc3 overexpressing transgenic plants than that in wild-type plants, and the transcript levels of abiotic stress-related genes were significantly increased
RCc3	Os02g0662000	LOC_Os02g44310	root	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Taken together, the data showed that RCc3 overexpression can improve rice root system, promote plant growth, and enhance plant tolerance to salt stress
RCc3	Os02g0662000	LOC_Os02g44310	growth	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	In this study, we investigated the biological role of the rice root-specific gene RCc3 in improving root growth and responses to abiotic stress by overexpressing RCc3 in rice plants
RCc3	Os02g0662000	LOC_Os02g44310	growth	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	RCc3 overexpression produced pleiotropic phenotypes of improved root system architecture, including increased growth of primary root, adventitious roots and lateral roots at the seedling stage
RCc3	Os02g0662000	LOC_Os02g44310	growth	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Under osmotic and heat stress conditions, the root and shoot growth were less severely inhibited in RCc3 overexpressing transgenic plants than that in wild-type plants, and the transcript levels of abiotic stress-related genes were significantly increased
RCc3	Os02g0662000	LOC_Os02g44310	shoot	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Under osmotic and heat stress conditions, the root and shoot growth were less severely inhibited in RCc3 overexpressing transgenic plants than that in wild-type plants, and the transcript levels of abiotic stress-related genes were significantly increased
RCc3	Os02g0662000	LOC_Os02g44310	seedling	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	RCc3 overexpression produced pleiotropic phenotypes of improved root system architecture, including increased growth of primary root, adventitious roots and lateral roots at the seedling stage
RCc3	Os02g0662000	LOC_Os02g44310	salt	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.
RCc3	Os02g0662000	LOC_Os02g44310	salt	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Moreover, overexpression of RCc3 remarkably enhanced the tolerance to salt stress, with the elevated activities of antioxidant enzymes
RCc3	Os02g0662000	LOC_Os02g44310	salt	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Taken together, the data showed that RCc3 overexpression can improve rice root system, promote plant growth, and enhance plant tolerance to salt stress
RCc3	Os02g0662000	LOC_Os02g44310	tolerance	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.
RCc3	Os02g0662000	LOC_Os02g44310	tolerance	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Moreover, overexpression of RCc3 remarkably enhanced the tolerance to salt stress, with the elevated activities of antioxidant enzymes
RCc3	Os02g0662000	LOC_Os02g44310	tolerance	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Taken together, the data showed that RCc3 overexpression can improve rice root system, promote plant growth, and enhance plant tolerance to salt stress
RCc3	Os02g0662000	LOC_Os02g44310	abiotic stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	In this study, we investigated the biological role of the rice root-specific gene RCc3 in improving root growth and responses to abiotic stress by overexpressing RCc3 in rice plants
RCc3	Os02g0662000	LOC_Os02g44310	abiotic stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Under osmotic and heat stress conditions, the root and shoot growth were less severely inhibited in RCc3 overexpressing transgenic plants than that in wild-type plants, and the transcript levels of abiotic stress-related genes were significantly increased
RCc3	Os02g0662000	LOC_Os02g44310	auxin	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Further study indicated that auxin accumulation in the root was increased through auxin local biosynthesis and polar auxin transport in RCc3 overexpression lines
RCc3	Os02g0662000	LOC_Os02g44310	salt tolerance	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.
RCc3	Os02g0662000	LOC_Os02g44310	salt stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Moreover, overexpression of RCc3 remarkably enhanced the tolerance to salt stress, with the elevated activities of antioxidant enzymes
RCc3	Os02g0662000	LOC_Os02g44310	salt stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Taken together, the data showed that RCc3 overexpression can improve rice root system, promote plant growth, and enhance plant tolerance to salt stress
RCc3	Os02g0662000	LOC_Os02g44310	stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	In this study, we investigated the biological role of the rice root-specific gene RCc3 in improving root growth and responses to abiotic stress by overexpressing RCc3 in rice plants
RCc3	Os02g0662000	LOC_Os02g44310	stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	RCc3 was induced by osmotic and heat stress
RCc3	Os02g0662000	LOC_Os02g44310	stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Under osmotic and heat stress conditions, the root and shoot growth were less severely inhibited in RCc3 overexpressing transgenic plants than that in wild-type plants, and the transcript levels of abiotic stress-related genes were significantly increased
RCc3	Os02g0662000	LOC_Os02g44310	stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Taken together, the data showed that RCc3 overexpression can improve rice root system, promote plant growth, and enhance plant tolerance to salt stress
RCc3	Os02g0662000	LOC_Os02g44310	architecture	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.
RCc3	Os02g0662000	LOC_Os02g44310	biotic stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	In this study, we investigated the biological role of the rice root-specific gene RCc3 in improving root growth and responses to abiotic stress by overexpressing RCc3 in rice plants
RCc3	Os02g0662000	LOC_Os02g44310	biotic stress	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Under osmotic and heat stress conditions, the root and shoot growth were less severely inhibited in RCc3 overexpressing transgenic plants than that in wild-type plants, and the transcript levels of abiotic stress-related genes were significantly increased
RCc3	Os02g0662000	LOC_Os02g44310	auxin transport	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Further study indicated that auxin accumulation in the root was increased through auxin local biosynthesis and polar auxin transport in RCc3 overexpression lines
RCc3	Os02g0662000	LOC_Os02g44310	lateral root	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	RCc3 overexpression produced pleiotropic phenotypes of improved root system architecture, including increased growth of primary root, adventitious roots and lateral roots at the seedling stage
RCc3	Os02g0662000	LOC_Os02g44310	adventitious root	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	RCc3 overexpression produced pleiotropic phenotypes of improved root system architecture, including increased growth of primary root, adventitious roots and lateral roots at the seedling stage
RCc3	Os02g0662000	LOC_Os02g44310	primary root	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	RCc3 overexpression produced pleiotropic phenotypes of improved root system architecture, including increased growth of primary root, adventitious roots and lateral roots at the seedling stage
RCc3	Os02g0662000	LOC_Os02g44310	plant growth	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Taken together, the data showed that RCc3 overexpression can improve rice root system, promote plant growth, and enhance plant tolerance to salt stress
RCc3	Os02g0662000	LOC_Os02g44310	root system architecture	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.
RCc3	Os02g0662000	LOC_Os02g44310	root system architecture	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	RCc3 overexpression produced pleiotropic phenotypes of improved root system architecture, including increased growth of primary root, adventitious roots and lateral roots at the seedling stage
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	inflorescence	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	To investigate the possibility of similar mechanisms operating in the control of inflorescence architecture in rice, we analysed the functions of RCN1 and RCN2, rice TFL1/CEN homologs
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tillering	Rice shoot branching requires an ATP-binding cassette subfamily G protein	Phenotypic analyses of rcn1 and tillering dwarf 3 (d3) double mutants at the seedling stage clarified that Rcn1 works independently of D3 in the branching inhibitor pathway
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	growth	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	growth	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	The rcn1 rcn11 phenotype suggests that RCN11 acts on vegetative growth independent of RCN1/OsABCG5
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	growth	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	Thus, rcn11 will shed new light on vegetative growth control under low temperature
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	growth	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	seedling	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	temperature	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	We isolated a novel reduced culm number mutant, designated reduced culm number11 (rcn11), by screening under low-temperature condition in a paddy fields
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	temperature	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	Thus, rcn11 will shed new light on vegetative growth control under low temperature
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	temperature	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	culm	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	We isolated a novel reduced culm number mutant, designated reduced culm number11 (rcn11), by screening under low-temperature condition in a paddy fields
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	culm	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	reproductive	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	In 35S::RCN1 and 35S::RCN2 transgenic rice plants, the delay of transition to the reproductive phase was observed
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	crown	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	dwarf	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	dwarf	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	dwarf	Rice shoot branching requires an ATP-binding cassette subfamily G protein	Phenotypic analyses of rcn1 and tillering dwarf 3 (d3) double mutants at the seedling stage clarified that Rcn1 works independently of D3 in the branching inhibitor pathway
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	crown	Rice shoot branching requires an ATP-binding cassette subfamily G protein	In addition, Rcn1 is expressed in the crown root primordia, endodermis, pericycle and stele in the root
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	vegetative	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	vegetative	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	The rcn1 rcn11 phenotype suggests that RCN11 acts on vegetative growth independent of RCN1/OsABCG5
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	vegetative	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	Thus, rcn11 will shed new light on vegetative growth control under low temperature
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	vegetative	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tiller	Rice shoot branching requires an ATP-binding cassette subfamily G protein	Phenotypic analyses of rcn1 and tillering dwarf 3 (d3) double mutants at the seedling stage clarified that Rcn1 works independently of D3 in the branching inhibitor pathway
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	A new rcn1 mutant, designated as S-97-61 exhibited a reduction in tiller number and plant stature to about the same level as the previously reported original rcn1 mutant
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	The reduction in tillering by the rcn1 mutation was independent of the d3 genotype, and tillering number of d3rcn1 double mutant was between those of the d3 and rcn1 mutants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	These results demonstrated that the Rcn1 gene was not involved in the D3-associated pathway in tillering control
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tiller	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	flower	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice	The GIGANTEA and TERMINAL FLOWER1/CENTRORADIALIS homolog (RCN1) that cause delayed flowering were upregulated in ETR2-overexpressing plants but downregulated in the etr2 mutant
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	crown root	Rice shoot branching requires an ATP-binding cassette subfamily G protein	In addition, Rcn1 is expressed in the crown root primordia, endodermis, pericycle and stele in the root
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	branching	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	Constitutive overexpression of RCN1 or RCN2 in Arabidopsis caused a late-flowering and highly branching phenotype, indicating that they possess conserved biochemical functions as TFL1
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	root	Rice shoot branching requires an ATP-binding cassette subfamily G protein	In addition, Rcn1 is expressed in the crown root primordia, endodermis, pericycle and stele in the root
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	root	Rice shoot branching requires an ATP-binding cassette subfamily G protein	No effect on Rcn1 expression in shoots or roots was seen when the roots were treated with auxins
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	shoot	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	culm	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Here, characterization of rice (Oryza sativa) reduced culm number 1 (rcn1) mutants revealed that Rcn1 positively controls shoot branching by promoting the outgrowth of lateral shoots
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	flower	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	Constitutive overexpression of RCN1 or RCN2 in Arabidopsis caused a late-flowering and highly branching phenotype, indicating that they possess conserved biochemical functions as TFL1
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	flower	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tiller number	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tiller number	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	A new rcn1 mutant, designated as S-97-61 exhibited a reduction in tiller number and plant stature to about the same level as the previously reported original rcn1 mutant
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	breeding	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Rcn1 is the first functionally defined plant ABCG protein gene that controls shoot branching and could thus be significant in future breeding for high-yielding rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	architecture	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	To investigate the possibility of similar mechanisms operating in the control of inflorescence architecture in rice, we analysed the functions of RCN1 and RCN2, rice TFL1/CEN homologs
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	panicle	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	inflorescence architecture	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	To investigate the possibility of similar mechanisms operating in the control of inflorescence architecture in rice, we analysed the functions of RCN1 and RCN2, rice TFL1/CEN homologs
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	lateral root	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	yield	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Rcn1 is the first functionally defined plant ABCG protein gene that controls shoot branching and could thus be significant in future breeding for high-yielding rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	seedling	Rice shoot branching requires an ATP-binding cassette subfamily G protein	Phenotypic analyses of rcn1 and tillering dwarf 3 (d3) double mutants at the seedling stage clarified that Rcn1 works independently of D3 in the branching inhibitor pathway
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	crown root	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	leaf	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Rcn1 is expressed in leaf primordia of main and axillary shoots, and in the vascular cells and leaf epidermis of older leaves
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	shoot architecture	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	growth	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Here, characterization of rice (Oryza sativa) reduced culm number 1 (rcn1) mutants revealed that Rcn1 positively controls shoot branching by promoting the outgrowth of lateral shoots
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	root development	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	architecture	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	Since the shoot architecture of the rcn11 was very similar to that of the rcn1, we examined whether RCN11 is involved in RCN1/OsABCG5-associated vegetative growth control
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	branching	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Here, characterization of rice (Oryza sativa) reduced culm number 1 (rcn1) mutants revealed that Rcn1 positively controls shoot branching by promoting the outgrowth of lateral shoots
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	branching	Rice shoot branching requires an ATP-binding cassette subfamily G protein	Phenotypic analyses of rcn1 and tillering dwarf 3 (d3) double mutants at the seedling stage clarified that Rcn1 works independently of D3 in the branching inhibitor pathway
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	branching	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Rcn1 is the first functionally defined plant ABCG protein gene that controls shoot branching and could thus be significant in future breeding for high-yielding rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	culm	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	culm	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tillering	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Mutant genes, reduced culm number 1 (rcn1) and bunketsuwaito tillering dwarf (d3), affect tiller number in rice (Oryza sativa L
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tillering	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	The reduction in tillering by the rcn1 mutation was independent of the d3 genotype, and tillering number of d3rcn1 double mutant was between those of the d3 and rcn1 mutants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tillering	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	These results demonstrated that the Rcn1 gene was not involved in the D3-associated pathway in tillering control
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	tillering	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	root	The rice REDUCED CULM NUMBER11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5	A root development comparison between rcn1 and rcn11 in young seedlings represented that rcn11 reduced crown root number and elongation, whereas rcn1 reduced lateral root density and elongation
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	shoot	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Here, characterization of rice (Oryza sativa) reduced culm number 1 (rcn1) mutants revealed that Rcn1 positively controls shoot branching by promoting the outgrowth of lateral shoots
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	shoot	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Rcn1 is expressed in leaf primordia of main and axillary shoots, and in the vascular cells and leaf epidermis of older leaves
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	shoot	Rice shoot branching requires an ATP-binding cassette subfamily G protein	No effect on Rcn1 expression in shoots or roots was seen when the roots were treated with auxins
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	shoot	Rice shoot branching requires an ATP-binding cassette subfamily G protein	* Rcn1 is the first functionally defined plant ABCG protein gene that controls shoot branching and could thus be significant in future breeding for high-yielding rice
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	auxin	Rice shoot branching requires an ATP-binding cassette subfamily G protein	No effect on Rcn1 expression in shoots or roots was seen when the roots were treated with auxins
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	root	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	root	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	In many plant species, including rice (Oryza sativa), the hypodermis in the outer part of roots forms a suberized cell wall (the Casparian strip and/or suberin lamellae), which inhibits the flow of water and ions and protects against pathogens
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	root	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	We discovered that a rice reduced culm number1 (rcn1) mutant could not develop roots longer than 100 mm in waterlogged soil
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	root	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	RCN1/OsABCG5 gene expression in the wild type was increased in most hypodermal and some endodermal roots cells under stagnant deoxygenated conditions
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	root	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	These findings suggest that RCN1/OsABCG5 has a role in the suberization of the hypodermis of rice roots, which contributes to formation of the apoplastic barrier
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	culm	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	We discovered that a rice reduced culm number1 (rcn1) mutant could not develop roots longer than 100 mm in waterlogged soil
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	cell wall	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	In many plant species, including rice (Oryza sativa), the hypodermis in the outer part of roots forms a suberized cell wall (the Casparian strip and/or suberin lamellae), which inhibits the flow of water and ions and protects against pathogens
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	transporter	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	transporter	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	The mutated gene encoded an ATP-binding cassette (ABC) transporter named RCN1/OsABCG5
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	GA	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	In many plant species, including rice (Oryza sativa), the hypodermis in the outer part of roots forms a suberized cell wall (the Casparian strip and/or suberin lamellae), which inhibits the flow of water and ions and protects against pathogens
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	plasma membrane	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	A GFP-RCN1/OsABCG5 fusion protein localized at the plasma membrane of the wild type
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	ABA	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	ABA application resulted in a smaller increase in the percentage of guard cell pairs containing ABA in rcn1 mutant (A684P) and RCN1-RNAi than in wild-type plants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	ABA	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	Furthermore, polyethylene glycol (drought stress)-inducible ABA accumulation in guard cells did not occur in rcn1 mutants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	ABA	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	Stomata closure mediated by exogenous ABA application was strongly reduced in rcn1 mutants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	stomata	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	Stomata closure mediated by exogenous ABA application was strongly reduced in rcn1 mutants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	water loss	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	Finally, rcn1 mutant plants had more rapid water loss from detached leaves than the wild-type plants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	ABA	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	ABA application resulted in a smaller increase in the percentage of guard cell pairs containing ABA in rcn1 mutant (A684P) and RCN1-RNAi than in wild-type plants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	ABA	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	Furthermore, polyethylene glycol (drought stress)-inducible ABA accumulation in guard cells did not occur in rcn1 mutants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	ABA	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	Stomata closure mediated by exogenous ABA application was strongly reduced in rcn1 mutants
Rcn1|OsABCG5	Os03g0281900	LOC_Os03g17350	drought stress	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	Furthermore, polyethylene glycol (drought stress)-inducible ABA accumulation in guard cells did not occur in rcn1 mutants
RCN2	Os02g0531600	LOC_Os02g32950	reproductive	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	In 35S::RCN1 and 35S::RCN2 transgenic rice plants, the delay of transition to the reproductive phase was observed
RCN2	Os02g0531600	LOC_Os02g32950	panicle	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice
RCN2	Os02g0531600	LOC_Os02g32950	inflorescence architecture	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	To investigate the possibility of similar mechanisms operating in the control of inflorescence architecture in rice, we analysed the functions of RCN1 and RCN2, rice TFL1/CEN homologs
RCN2	Os02g0531600	LOC_Os02g32950	inflorescence	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	To investigate the possibility of similar mechanisms operating in the control of inflorescence architecture in rice, we analysed the functions of RCN1 and RCN2, rice TFL1/CEN homologs
RCN2	Os02g0531600	LOC_Os02g32950	architecture	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	To investigate the possibility of similar mechanisms operating in the control of inflorescence architecture in rice, we analysed the functions of RCN1 and RCN2, rice TFL1/CEN homologs
RCN2	Os02g0531600	LOC_Os02g32950	branching	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	Constitutive overexpression of RCN1 or RCN2 in Arabidopsis caused a late-flowering and highly branching phenotype, indicating that they possess conserved biochemical functions as TFL1
RCN2	Os02g0531600	LOC_Os02g32950	flower	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	Constitutive overexpression of RCN1 or RCN2 in Arabidopsis caused a late-flowering and highly branching phenotype, indicating that they possess conserved biochemical functions as TFL1
RCN2	Os02g0531600	LOC_Os02g32950	flower	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice	Overexpression ofRCN1andRCN2, riceTERMINAL FLOWER 1/CENTRORADIALIShomologs, confers delay of phase transition and altered panicle morphology in rice
RCN3	Os12g0152000	LOC_Os12g05590	inflorescence development	TFL1-Like Proteins in Rice Antagonize Rice FT-Like Protein in Inflorescence Development by Competition for Complex Formation with 14-3-3 and FD	All four RCN genes are predominantly expressed in the vasculature, and RCN proteins are transported to the shoot apex to antagonize florigen activity and regulate inflorescence development.
RCN4	Os04g0411400	LOC_Os04g33570	inflorescence development	TFL1-Like Proteins in Rice Antagonize Rice FT-Like Protein in Inflorescence Development by Competition for Complex Formation with 14-3-3 and FD	All four RCN genes are predominantly expressed in the vasculature, and RCN proteins are transported to the shoot apex to antagonize florigen activity and regulate inflorescence development.
RDD1	Os01g0264000	LOC_Os01g15900	flower	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice	In addition, RDD1-AS plants were smaller and flowered later than WT or RDD1-S plants; decreases in grain length, width and 1000-grain weight were also recorded
RDD1	Os01g0264000	LOC_Os01g15900	grain	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice	In addition, RDD1-AS plants were smaller and flowered later than WT or RDD1-S plants; decreases in grain length, width and 1000-grain weight were also recorded
RDD1	Os01g0264000	LOC_Os01g15900	grain	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice	This study demonstrates that Rdd1 is a circadian clock and phy-regulated gene, which is associated with grain size in rice
RDD1	Os01g0264000	LOC_Os01g15900	grain	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice
RDD1	Os01g0264000	LOC_Os01g15900	grain size	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice	This study demonstrates that Rdd1 is a circadian clock and phy-regulated gene, which is associated with grain size in rice
RDD1	Os01g0264000	LOC_Os01g15900	grain size	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice
RDD1	Os01g0264000	LOC_Os01g15900	grain length	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice	In addition, RDD1-AS plants were smaller and flowered later than WT or RDD1-S plants; decreases in grain length, width and 1000-grain weight were also recorded
RDD1	Os01g0264000	LOC_Os01g15900	grain weight	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice	In addition, RDD1-AS plants were smaller and flowered later than WT or RDD1-S plants; decreases in grain length, width and 1000-grain weight were also recorded
RDD1	Os01g0264000	LOC_Os01g15900	transcription factor	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice	We report here on the characterization of a putative Dof transcription factor gene in rice (Oryza sativa)--rice Dof daily fluctuations 1 (Rdd1)
RDD1	Os01g0264000	LOC_Os01g15900	grain	MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice.	Moreover, the overexpression of RDD1 increased nitrogen responsiveness and grain productivity
RDD1	Os01g0264000	LOC_Os01g15900	grain	MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice.	Our results suggest that RDD1 can contribute to the increased grain productivity of rice via inducing the efficient uptake and accumulation of various nutrient ions
RDD1	Os01g0264000	LOC_Os01g15900	nitrogen	MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice.	Moreover, the overexpression of RDD1 increased nitrogen responsiveness and grain productivity
RDD1	Os01g0264000	LOC_Os01g15900	transcription factor	MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice.	MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice.
RDD1	Os01g0264000	LOC_Os01g15900	transcription factor	MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice.	Here, we show that the transcription factor encoding gene RDD1 plays a role in improving the uptake and accumulation of various nutrient ions in rice
RDD1	Os01g0264000	LOC_Os01g15900	transcription factor	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.
RDD1	Os01g0264000	LOC_Os01g15900	transcription factor	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	The transcription factor-encoding gene RDD1 increases the uptake of nutrient ions, photosynthetic activity under ambient and high CO(2) conditions, and grain productivity, and microRNA166 (miR166) regulates its transcript levels
RDD1	Os01g0264000	LOC_Os01g15900	grain	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.
RDD1	Os01g0264000	LOC_Os01g15900	grain	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	The transcription factor-encoding gene RDD1 increases the uptake of nutrient ions, photosynthetic activity under ambient and high CO(2) conditions, and grain productivity, and microRNA166 (miR166) regulates its transcript levels
RDD1	Os01g0264000	LOC_Os01g15900	grain	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	 These results suggest that the in-frame mutagenesis of RDD1 to suppress miR166-RDD1 transcript pairing contributes to the improved grain appearance of rice
RDD1	Os01g0264000	LOC_Os01g15900	grain quality	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.
RDD1	Os01g0264000	LOC_Os01g15900	quality	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.
REB	Os03g0796900	LOC_Os03g58250	transcription factor	Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter	The gene encoding the rice transcription factor, REB (rice endosperm bZIP) was cloned from a bacterial artificial chromosome library of rice
REB	Os03g0796900	LOC_Os03g58250	endosperm	Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter	The gene encoding the rice transcription factor, REB (rice endosperm bZIP) was cloned from a bacterial artificial chromosome library of rice
REB	Os03g0796900	LOC_Os03g58250	endosperm	Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter	The function of the Reb gene was explored by a transient assay by using a rice immature endosperm system
REB	Os03g0796900	LOC_Os03g58250	endosperm	Characterization of a novel rice bZIP protein which binds to the alpha-globulin promoter	We isolated a novel bZIP protein (REB) gene encoding 425 amino acid residues from rice endosperm, which is similar to Opaque-2 heterodimerizing protein (OHP) of maize
REB	Os03g0796900	LOC_Os03g58250	endosperm	Characterization of a novel rice bZIP protein which binds to the alpha-globulin promoter	A Super-shift assay using anti-REB antibody suggested that REB is a major DNA-binding protein for the alpha-globulin gene promoter in rice endosperm
RECA3	Os01g0901200	LOC_Os01g67510	helicase	Defective mitochondrial function by mutation in THICK ALEURONE 1 encoding a mitochondrion-targeted single-stranded DNA-binding protein leads to increased aleurone cell layers and improved nutrition in rice.	 We found that TA1/OsmtSSB1 interacts with mitochondrial DNA recombinase RECA3 and DNA helicase TWINKLE, and downregulation of RECA3 or TWINKLE also leads to ta1-like phenotypes
REL1	None	LOC_Os01g64380	leaf	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Electron microscope observations indicated that the leaf incurvations of rel1 dominant mutants result from the alteration of the size and number of bulliform cells
REL1	None	LOC_Os01g64380	leaf	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Alternatively, overexpression of REL1 in wild-type plants induced a phenotype similar to that of the dominant rel1 mutant, indicating that REL1 plays a positive role in leaf rolling and bending
REL1	None	LOC_Os01g64380	leaf	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Taken together, these findings suggest that REL1 regulates leaf morphology, particularly in leaf rolling and bending, through the coordination of BR signalling transduction
REL1	None	LOC_Os01g64380	growth	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Consistent with the observed rel1 phenotype, the REL1 gene was predominantly expressed in the meristem of various tissues during plant growth and development
REL1	None	LOC_Os01g64380	development	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Consistent with the observed rel1 phenotype, the REL1 gene was predominantly expressed in the meristem of various tissues during plant growth and development
REL1	None	LOC_Os01g64380	meristem	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Consistent with the observed rel1 phenotype, the REL1 gene was predominantly expressed in the meristem of various tissues during plant growth and development
REL1	None	LOC_Os01g64380	brassinosteroid	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Nevertheless, the responsiveness of both rel1 dominant mutants and REL1-overexpressing plants to exogenous brassinosteroid (BR) was reduced
REL1	None	LOC_Os01g64380	BR	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Moreover, transcript levels of BR response genes in the rel1 dominant mutants and REL1-overexpressing lines were significantly altered
REL1	None	LOC_Os01g64380	BR	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Taken together, these findings suggest that REL1 regulates leaf morphology, particularly in leaf rolling and bending, through the coordination of BR signalling transduction
REL1	None	LOC_Os01g64380	plant growth	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Consistent with the observed rel1 phenotype, the REL1 gene was predominantly expressed in the meristem of various tissues during plant growth and development
REL1	None	LOC_Os01g64380	leaf rolling	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Alternatively, overexpression of REL1 in wild-type plants induced a phenotype similar to that of the dominant rel1 mutant, indicating that REL1 plays a positive role in leaf rolling and bending
REL1	None	LOC_Os01g64380	leaf rolling	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	Taken together, these findings suggest that REL1 regulates leaf morphology, particularly in leaf rolling and bending, through the coordination of BR signalling transduction
REL1	None	LOC_Os01g64380	drought	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.
REL1	None	LOC_Os01g64380	drought	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	However, the role of REL1 in drought response is still poorly understood
REL1	None	LOC_Os01g64380	drought	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Moreover, our results revealed that rel1-D was hypersensitive to ABA and the expression of ABA associated genes was significantly increased in rel1-D, suggesting that REL1 likely coordinates ABA to regulate drought response
REL1	None	LOC_Os01g64380	abiotic stress	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Consistently, we also found that constitutive expression of REL1 alters the expression of biotic and abiotic stress responsive genes by the isobaric tags for relative and absolute quantification (iTRAQ) analysis
REL1	None	LOC_Os01g64380	ABA	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Moreover, our results revealed that rel1-D was hypersensitive to ABA and the expression of ABA associated genes was significantly increased in rel1-D, suggesting that REL1 likely coordinates ABA to regulate drought response
REL1	None	LOC_Os01g64380	stress	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.
REL1	None	LOC_Os01g64380	stress	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Consistently, we also found that constitutive expression of REL1 alters the expression of biotic and abiotic stress responsive genes by the isobaric tags for relative and absolute quantification (iTRAQ) analysis
REL1	None	LOC_Os01g64380	biotic stress	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Consistently, we also found that constitutive expression of REL1 alters the expression of biotic and abiotic stress responsive genes by the isobaric tags for relative and absolute quantification (iTRAQ) analysis
REL1	None	LOC_Os01g64380	ABA	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Moreover, our results revealed that rel1-D was hypersensitive to ABA and the expression of ABA associated genes was significantly increased in rel1-D, suggesting that REL1 likely coordinates ABA to regulate drought response
REL1	None	LOC_Os01g64380	drought stress	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.
REL1	None	LOC_Os01g64380	drought stress	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.
REL1	None	LOC_Os01g64380	abscisic acid	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	leaf	REL2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls Leaf Rolling in Rice.	In this study, we identified and characterized a rolling and erect leaf mutant in rice and named it as rel2
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	leaf	REL2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls Leaf Rolling in Rice.	The results from quantitative RT-PCR analysis indicated that REL2 functioning in the leaf shape formation might have functional linkage with many genes associated with the bulliform cells development, auxin synthesis and transport, etc
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	leaf	REL2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls Leaf Rolling in Rice.	REL2 is the DUF domains contained protein which involves in the control of leaf rolling in rice
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	map-based cloning	REL2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls Leaf Rolling in Rice.	We firstly mapped REL2 to a 35-kb physical region of chromosome 10 by map-based cloning strategy
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	auxin	REL2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls Leaf Rolling in Rice.	The results from quantitative RT-PCR analysis indicated that REL2 functioning in the leaf shape formation might have functional linkage with many genes associated with the bulliform cells development, auxin synthesis and transport, etc
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	leaf shape	REL2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls Leaf Rolling in Rice.	The results from quantitative RT-PCR analysis indicated that REL2 functioning in the leaf shape formation might have functional linkage with many genes associated with the bulliform cells development, auxin synthesis and transport, etc
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	erect	REL2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls Leaf Rolling in Rice.	In this study, we identified and characterized a rolling and erect leaf mutant in rice and named it as rel2
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	plasma membrane	REL2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls Leaf Rolling in Rice.	Further studies showed that REL2 protein is mainly distributed along the plasma membrane of cells and the REL2 gene is relatively higher expressed in younger leaves of rice
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	leaf rolling	REL2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls Leaf Rolling in Rice.	REL2 is the DUF domains contained protein which involves in the control of leaf rolling in rice
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	leaf	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Here, we report a semi-dwarf and low tillering mutant Osdlt10 (dwarf and low tillering 10) that exhibited reduced tiller number, semi-dwarfism, increased grain width, low seed-setting rate, curled leaf tip and a series of abnormalities of agronomic traits
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	leaf	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Expression pattern analysis indicated that OsDLT10 was primarily expressed in the stem node, the basic part of axillary bud and leaf sheath, pulvinus
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	tillering	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Here, we report a semi-dwarf and low tillering mutant Osdlt10 (dwarf and low tillering 10) that exhibited reduced tiller number, semi-dwarfism, increased grain width, low seed-setting rate, curled leaf tip and a series of abnormalities of agronomic traits
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	tillering	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Phenotypic observations showed that Osdlt10 mutants had defects in tiller bud formation and grew slowly at the tillering stage
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stem	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Expression pattern analysis indicated that OsDLT10 was primarily expressed in the stem node, the basic part of axillary bud and leaf sheath, pulvinus
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stem	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Endogenous auxin content decreased significantly at the base of stem node and axillary bud in Osdlt10 mutants
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	auxin	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	The hormone treatment investigation indicated that extremely high of exogenous auxin concentrations can inhibit the expression of OsDLT10
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	auxin	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Endogenous auxin content decreased significantly at the base of stem node and axillary bud in Osdlt10 mutants
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	auxin	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	The results showed that OsDLT10 was related to auxin
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	development	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	These results revealed that OsDLT10 played a critical role in influencing tiller number, likely in association with hormone signals and the WUS-CLV pathway, to regulate axillary bud development in rice
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	grain	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Here, we report a semi-dwarf and low tillering mutant Osdlt10 (dwarf and low tillering 10) that exhibited reduced tiller number, semi-dwarfism, increased grain width, low seed-setting rate, curled leaf tip and a series of abnormalities of agronomic traits
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	tiller	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Here, we report a semi-dwarf and low tillering mutant Osdlt10 (dwarf and low tillering 10) that exhibited reduced tiller number, semi-dwarfism, increased grain width, low seed-setting rate, curled leaf tip and a series of abnormalities of agronomic traits
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	tiller	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Phenotypic observations showed that Osdlt10 mutants had defects in tiller bud formation and grew slowly at the tillering stage
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	tiller	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	These results revealed that OsDLT10 played a critical role in influencing tiller number, likely in association with hormone signals and the WUS-CLV pathway, to regulate axillary bud development in rice
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	tiller number	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Here, we report a semi-dwarf and low tillering mutant Osdlt10 (dwarf and low tillering 10) that exhibited reduced tiller number, semi-dwarfism, increased grain width, low seed-setting rate, curled leaf tip and a series of abnormalities of agronomic traits
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	tiller number	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	These results revealed that OsDLT10 played a critical role in influencing tiller number, likely in association with hormone signals and the WUS-CLV pathway, to regulate axillary bud development in rice
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	grain width	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Here, we report a semi-dwarf and low tillering mutant Osdlt10 (dwarf and low tillering 10) that exhibited reduced tiller number, semi-dwarfism, increased grain width, low seed-setting rate, curled leaf tip and a series of abnormalities of agronomic traits
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	node	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis	Endogenous auxin content decreased significantly at the base of stem node and axillary bud in Osdlt10 mutants
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	development	RSD1 Is Essential for Stomatal Patterning and Files in Rice	This study characterized the functions of RSD1 and OsSDD1 in rice stomatal development
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	cell division	RSD1 Is Essential for Stomatal Patterning and Files in Rice	OsSDD1 and RSD1 are both required for inhibiting ectopic asymmetric cell divisions (ACDs) and clustered stomata
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stress	RSD1 Is Essential for Stomatal Patterning and Files in Rice	By dehydration stress assay, the decreased stomatal density of rsd1 mutants enhanced their dehydration avoidance
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stomatal	RSD1 Is Essential for Stomatal Patterning and Files in Rice	RSD1 Is Essential for Stomatal Patterning and Files in Rice
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stomatal	RSD1 Is Essential for Stomatal Patterning and Files in Rice	It was found that the deletion of RSD1 would lead to the disorder of gene expression regarding stomatal development, especially the expression of stomatal density and distribution 1 (OsSDD1)
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stomatal	RSD1 Is Essential for Stomatal Patterning and Files in Rice	By dehydration stress assay, the decreased stomatal density of rsd1 mutants enhanced their dehydration avoidance
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stomatal	RSD1 Is Essential for Stomatal Patterning and Files in Rice	This study characterized the functions of RSD1 and OsSDD1 in rice stomatal development
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stomata	RSD1 Is Essential for Stomatal Patterning and Files in Rice	Through the construction of OsSDD1 deletion mutants by CRISPR-Cas9, we found that, similar to rsd1 mutants, the ossdd1 mutants have clustered stomata and extra small cells adjacent to the stomata
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stomata	RSD1 Is Essential for Stomatal Patterning and Files in Rice	OsSDD1 and RSD1 are both required for inhibiting ectopic asymmetric cell divisions (ACDs) and clustered stomata
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stomatal development	RSD1 Is Essential for Stomatal Patterning and Files in Rice	It was found that the deletion of RSD1 would lead to the disorder of gene expression regarding stomatal development, especially the expression of stomatal density and distribution 1 (OsSDD1)
REL2|OsDLT10|RSD1	Os10g0562700	LOC_Os10g41310	stomatal development	RSD1 Is Essential for Stomatal Patterning and Files in Rice	This study characterized the functions of RSD1 and OsSDD1 in rice stomatal development
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	seedling	Multiple mode regulation of a cysteine proteinase gene expression in rice	In rice (Oryza sativa), REP-1 is a primary cysteine proteinase responsible for the digestion of seed storage proteins to provide nutrients to support the growth of young seedlings
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	gibberellin	Two cis-acting elements necessary and sufficient for gibberellin-upregulated proteinase expression in rice seeds	The expression of the gene for REP-1 (Rep1) is induced by gibberellins (GAs) and repressed by abscisic acid (ABA)
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	seed	Multiple mode regulation of a cysteine proteinase gene expression in rice	In rice (Oryza sativa), REP-1 is a primary cysteine proteinase responsible for the digestion of seed storage proteins to provide nutrients to support the growth of young seedlings
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	seed	Multiple mode regulation of a cysteine proteinase gene expression in rice	An OsEP3A-specific DNA probe was used to study the effect of various factors on the expression of OsEP3A in germinating seeds and vegetative tissues of rice
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	seed	Multiple mode regulation of a cysteine proteinase gene expression in rice	The expression of OsEP3A is hormonally regulated in germinating seeds, spatially and temporally regulated in vegetative tissues, and nitrogen-regulated in suspension-cultured cells
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	seed	Multiple mode regulation of a cysteine proteinase gene expression in rice	Histochemical studies also indicate that the OsEP3A promoter is sufficient to confer the hormonal regulation of GUS expression in germinating seeds
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	growth	Multiple mode regulation of a cysteine proteinase gene expression in rice	In rice (Oryza sativa), REP-1 is a primary cysteine proteinase responsible for the digestion of seed storage proteins to provide nutrients to support the growth of young seedlings
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	vegetative	Multiple mode regulation of a cysteine proteinase gene expression in rice	An OsEP3A-specific DNA probe was used to study the effect of various factors on the expression of OsEP3A in germinating seeds and vegetative tissues of rice
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	vegetative	Multiple mode regulation of a cysteine proteinase gene expression in rice	The expression of OsEP3A is hormonally regulated in germinating seeds, spatially and temporally regulated in vegetative tissues, and nitrogen-regulated in suspension-cultured cells
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	seed	Two cis-acting elements necessary and sufficient for gibberellin-upregulated proteinase expression in rice seeds	In germinating rice seeds, a cysteine proteinase (REP-1), synthesized in aleurone-layer cells, is a key enzyme in the degradation of the major storage protein, glutelin
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	nitrogen	Multiple mode regulation of a cysteine proteinase gene expression in rice	The expression of OsEP3A is hormonally regulated in germinating seeds, spatially and temporally regulated in vegetative tissues, and nitrogen-regulated in suspension-cultured cells
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	nitrogen	Multiple mode regulation of a cysteine proteinase gene expression in rice	The OsEP3A promoter is sufficient to confer nitrogen regulation of GUS expression in suspension-cultured cells
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	senescence	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants.	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants.
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	senescence	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants.	Expression of OsSAG12-1 is induced during senescence and pathogen-induced cell death
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	cell death	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants.	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants.
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	cell death	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants.	Expression of OsSAG12-1 is induced during senescence and pathogen-induced cell death
REP-1|OsEP3A|OsSAG12-1	Os01g0907600	LOC_Os01g67980	cell death	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants.	Our results suggest that OsSAG12-1 is a negative regulator of cell death in rice
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	palea	An AT-hook gene is required for palea formation and floral organ number control in rice	The DP1 enhancer SDP1 was also positional cloned, and was found identical to the recently reported RETARDED PALEA1 (REP1) gene encoding a TCP family transcription factor
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	floral	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	Here we show that floral zygomorphy along the lemma-palea axis in rice (Oryza sativa) is partially or indirectly determined by the CYCLOIDEA (CYC)-like homolog RETARDED PALEA1 (REP1), which regulates palea identity and development
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	floral	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	The REP1 gene is only expressed in palea primordium during early flower development, but during later floral stages is radially dispersed in stamens and the vascular bundles of the lemma and palea
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	floral	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	Furthermore, ectopic expression of REP1 caused the asymmetrical overdifferentiation of the palea cells, altering their floral asymmetry
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	stamen	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	The REP1 gene is only expressed in palea primordium during early flower development, but during later floral stages is radially dispersed in stamens and the vascular bundles of the lemma and palea
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	flower	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	The REP1 gene is only expressed in palea primordium during early flower development, but during later floral stages is radially dispersed in stamens and the vascular bundles of the lemma and palea
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	vascular bundle	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	The REP1 gene is only expressed in palea primordium during early flower development, but during later floral stages is radially dispersed in stamens and the vascular bundles of the lemma and palea
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	vascular bundle	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	The development of palea is significantly retarded in the rep1 mutant and its palea has five vascular bundles, which is similar to the vascular pattern of the wild-type lemma
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	palea	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	Here we show that floral zygomorphy along the lemma-palea axis in rice (Oryza sativa) is partially or indirectly determined by the CYCLOIDEA (CYC)-like homolog RETARDED PALEA1 (REP1), which regulates palea identity and development
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	palea	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	The REP1 gene is only expressed in palea primordium during early flower development, but during later floral stages is radially dispersed in stamens and the vascular bundles of the lemma and palea
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	palea	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	The development of palea is significantly retarded in the rep1 mutant and its palea has five vascular bundles, which is similar to the vascular pattern of the wild-type lemma
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	palea	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	Furthermore, ectopic expression of REP1 caused the asymmetrical overdifferentiation of the palea cells, altering their floral asymmetry
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	lemma	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	Here we show that floral zygomorphy along the lemma-palea axis in rice (Oryza sativa) is partially or indirectly determined by the CYCLOIDEA (CYC)-like homolog RETARDED PALEA1 (REP1), which regulates palea identity and development
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	lemma	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	The REP1 gene is only expressed in palea primordium during early flower development, but during later floral stages is radially dispersed in stamens and the vascular bundles of the lemma and palea
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	lemma	RETARDED PALEA1 controls palea development and floral zygomorphy in rice	The development of palea is significantly retarded in the rep1 mutant and its palea has five vascular bundles, which is similar to the vascular pattern of the wild-type lemma
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	transcription factor	An AT-hook gene is required for palea formation and floral organ number control in rice	The DP1 enhancer SDP1 was also positional cloned, and was found identical to the recently reported RETARDED PALEA1 (REP1) gene encoding a TCP family transcription factor
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	transcription factor	An AT-hook protein DEPRESSED PALEA1 physically interacts with the TCP family transcription factor RETARDED PALEA1 in rice.	DP1 is an AT-hook protein while REP1 is a TCP transcription factor, both of which are important regulators of palea development
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	development	An AT-hook protein DEPRESSED PALEA1 physically interacts with the TCP family transcription factor RETARDED PALEA1 in rice.	DP1 is an AT-hook protein while REP1 is a TCP transcription factor, both of which are important regulators of palea development
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	palea	An AT-hook protein DEPRESSED PALEA1 physically interacts with the TCP family transcription factor RETARDED PALEA1 in rice.	DP1 is an AT-hook protein while REP1 is a TCP transcription factor, both of which are important regulators of palea development
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	tillering	Neo-functionalization of a Teosinte branched 1 homologue mediates adaptations of upland rice.	Functional analyses suggest that the OsTb2 protein positively regulates tillering by interacting with the homologous OsTb1 protein and counteracts the inhibitory effect of OsTb1 on tillering
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	tiller	Neo-functionalization of a Teosinte branched 1 homologue mediates adaptations of upland rice.	Here, we report that an OsTb1 duplicate gene (OsTb2) has been artificially selected during upland rice adaptation and that natural variation in OsTb2 is associated with tiller number
REP1|OsTb2	Os09g0410500	LOC_Os09g24480	tiller number	Neo-functionalization of a Teosinte branched 1 homologue mediates adaptations of upland rice.	Here, we report that an OsTb1 duplicate gene (OsTb2) has been artificially selected during upland rice adaptation and that natural variation in OsTb2 is associated with tiller number
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein	Differential screening of a cDNA library constructed using poly(A)(+) RNA from suspension-cultured rice cells treated with jasmonic acid (JA) for 1/2h yielded a cDNA of a gene tentatively named RERJ1 that is upregulated in response to exogenous JA
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein	Northern blot analysis indicated that the RERJ1 mRNA levels peaked at 1/2-1h after the addition of jasmonic acid and then decreased gradually
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	drought	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	We previously reported that RERJ1, a JA-inducible transcription factor in rice, is up-regulated by exposure to wounding and drought stress
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	drought	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	RERJ1 expression was induced only at the region of injury after wounding, whereas expression was induced in the entire leaf after drought
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	drought	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	According to JA measurements of stressed leaves, high accumulation of endogenous JA was only detected around the wound site in a rice leaves, whereas the drought treatment led to uniform accumulation of JA in the entire leaf, suggesting that RERJ1 will be a useful marker gene for studies on localization of JA in rice
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	transcription factor	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	We previously reported that RERJ1, a JA-inducible transcription factor in rice, is up-regulated by exposure to wounding and drought stress
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	transcription factor	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic acid	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants	The jasmonic acid (JA)-responsive gene RERJ1 isolated from suspension-cultured rice cells encodes a transcription factor with a basic helix-loop-helix motif
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	growth	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein	The phenotypes of transgenic rice plants overexpressing sense or antisense RERJ1 mRNA demonstrated that RERJ1 is involved in the growth inhibition of rice shoots caused by JA
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants	The jasmonic acid (JA)-responsive gene RERJ1 isolated from suspension-cultured rice cells encodes a transcription factor with a basic helix-loop-helix motif
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	ja	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants	It is also suggested that JA but not abscisic acid is involved in the up-regulation of RERJ1 expression caused by wounding and drought stress
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	ja	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	According to JA measurements of stressed leaves, high accumulation of endogenous JA was only detected around the wound site in a rice leaves, whereas the drought treatment led to uniform accumulation of JA in the entire leaf, suggesting that RERJ1 will be a useful marker gene for studies on localization of JA in rice
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	ja	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	These results suggest that RERJ1 plays a role as a transcriptional activator for regulating stress-inducible gene expression, with a strong correlation to JA accumulation in the stressed region
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic acid	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein	Differential screening of a cDNA library constructed using poly(A)(+) RNA from suspension-cultured rice cells treated with jasmonic acid (JA) for 1/2h yielded a cDNA of a gene tentatively named RERJ1 that is upregulated in response to exogenous JA
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic acid	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein	Northern blot analysis indicated that the RERJ1 mRNA levels peaked at 1/2-1h after the addition of jasmonic acid and then decreased gradually
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic acid	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	leaf	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	RERJ1 expression was induced only at the region of injury after wounding, whereas expression was induced in the entire leaf after drought
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	leaf	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	According to JA measurements of stressed leaves, high accumulation of endogenous JA was only detected around the wound site in a rice leaves, whereas the drought treatment led to uniform accumulation of JA in the entire leaf, suggesting that RERJ1 will be a useful marker gene for studies on localization of JA in rice
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	drought	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants	In this study, we found that RERJ1 is also expressed in rice plants in response to JA, and that its expression in rice leaves is up-regulated by exposure to wounding and drought stress
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	drought	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants	It is also suggested that JA but not abscisic acid is involved in the up-regulation of RERJ1 expression caused by wounding and drought stress
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	drought	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	jasmonic acid	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	transcription factor	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants	The jasmonic acid (JA)-responsive gene RERJ1 isolated from suspension-cultured rice cells encodes a transcription factor with a basic helix-loop-helix motif
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	transcription factor	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants	Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	shoot	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein	The phenotypes of transgenic rice plants overexpressing sense or antisense RERJ1 mRNA demonstrated that RERJ1 is involved in the growth inhibition of rice shoots caused by JA
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	resistance	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Our data suggest that OsbHLH6 controls disease resistance by dynamically regulating SA and JA signaling
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	disease	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Transgenic rice plants overexpressing OsbHLH6 display increased JA responsive gene expression and enhanced disease susceptibility to the pathogen
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	disease	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Our data suggest that OsbHLH6 controls disease resistance by dynamically regulating SA and JA signaling
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	disease resistance	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Our data suggest that OsbHLH6 controls disease resistance by dynamically regulating SA and JA signaling
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	ja	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Transgenic rice plants overexpressing OsbHLH6 display increased JA responsive gene expression and enhanced disease susceptibility to the pathogen
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	ja	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Nucleus-localized OsbHLH6 activates JA signaling and suppresses SA signaling; however, the SA regulator OsNPR1 (Nonexpressor of PR genes 1) sequesters OsbHLH6 in the cytosol to alleviate its effect
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	ja	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Our data suggest that OsbHLH6 controls disease resistance by dynamically regulating SA and JA signaling
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	JA	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Transgenic rice plants overexpressing OsbHLH6 display increased JA responsive gene expression and enhanced disease susceptibility to the pathogen
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	JA	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Nucleus-localized OsbHLH6 activates JA signaling and suppresses SA signaling; however, the SA regulator OsNPR1 (Nonexpressor of PR genes 1) sequesters OsbHLH6 in the cytosol to alleviate its effect
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	JA	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Our data suggest that OsbHLH6 controls disease resistance by dynamically regulating SA and JA signaling
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	magnaporthe oryzae	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	OsbHLH6 expression was upregulated during Magnaporthe oryzae infection
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	sa	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Nucleus-localized OsbHLH6 activates JA signaling and suppresses SA signaling; however, the SA regulator OsNPR1 (Nonexpressor of PR genes 1) sequesters OsbHLH6 in the cytosol to alleviate its effect
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	sa	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Our data suggest that OsbHLH6 controls disease resistance by dynamically regulating SA and JA signaling
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	SA	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Nucleus-localized OsbHLH6 activates JA signaling and suppresses SA signaling; however, the SA regulator OsNPR1 (Nonexpressor of PR genes 1) sequesters OsbHLH6 in the cytosol to alleviate its effect
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	SA	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Our data suggest that OsbHLH6 controls disease resistance by dynamically regulating SA and JA signaling
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	pathogen	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Transgenic rice plants overexpressing OsbHLH6 display increased JA responsive gene expression and enhanced disease susceptibility to the pathogen
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	JA signaling	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Nucleus-localized OsbHLH6 activates JA signaling and suppresses SA signaling; however, the SA regulator OsNPR1 (Nonexpressor of PR genes 1) sequesters OsbHLH6 in the cytosol to alleviate its effect
RERJ1|OsOsbHLH006|OsbHLH6	Os04g0301500	LOC_Os04g23550	JA signaling	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	Our data suggest that OsbHLH6 controls disease resistance by dynamically regulating SA and JA signaling
Rf17|RMS	Os04g0475900	LOC_Os04g40020	mitochondria	Suppressed expression of Retrograde-Regulated Male Sterility restores pollen fertility in cytoplasmic male sterile rice plants	RMS encodes a mitochondrial protein, 178 aa in length, of unknown function, unlike the majority of other Rf genes cloned thus far, which encode pentatricopeptide repeat proteins
Rf17|RMS	Os04g0475900	LOC_Os04g40020	fertility	Suppressed expression of Retrograde-Regulated Male Sterility restores pollen fertility in cytoplasmic male sterile rice plants	Through positional cloning, we identified a nuclear candidate gene, RETROGRADE-REGULATED MALE STERILITY (RMS) for Rf17, a fertility restorer gene for Chinese wild rice (CW)-type CMS in rice (Oryza sativa L
Rf17|RMS	Os04g0475900	LOC_Os04g40020	fertility	Suppressed expression of Retrograde-Regulated Male Sterility restores pollen fertility in cytoplasmic male sterile rice plants	RNA interference-mediated gene silencing of RMS restored fertility to a CMS plant, whereas its overexpression in the fertility restorer line induced pollen abortion
Rf17|RMS	Os04g0475900	LOC_Os04g40020	fertility	Suppressed expression of Retrograde-Regulated Male Sterility restores pollen fertility in cytoplasmic male sterile rice plants	We found that a reduced-expression allele of the RMS gene restored fertility in haploid pollen, whereas a normal-expression allele caused pollen to die in the CW-type CMS
Rf17|RMS	Os04g0475900	LOC_Os04g40020	pollen	Suppressed expression of Retrograde-Regulated Male Sterility restores pollen fertility in cytoplasmic male sterile rice plants	RNA interference-mediated gene silencing of RMS restored fertility to a CMS plant, whereas its overexpression in the fertility restorer line induced pollen abortion
Rf17|RMS	Os04g0475900	LOC_Os04g40020	pollen	Suppressed expression of Retrograde-Regulated Male Sterility restores pollen fertility in cytoplasmic male sterile rice plants	We found that a reduced-expression allele of the RMS gene restored fertility in haploid pollen, whereas a normal-expression allele caused pollen to die in the CW-type CMS
Rf17|RMS	Os04g0475900	LOC_Os04g40020	anther	Suppressed expression of Retrograde-Regulated Male Sterility restores pollen fertility in cytoplasmic male sterile rice plants	The mRNA expression level of RMS in mature anthers depended on cytoplasmic genotype, suggesting that RMS is a candidate gene to be regulated via retrograde signaling
Rf17|RMS	Os04g0475900	LOC_Os04g40020	fertility	Suppressed expression of Retrograde-Regulated Male Sterility restores pollen fertility in cytoplasmic male sterile rice plants	Through positional cloning, we identified a nuclear candidate gene, RETROGRADE-REGULATED MALE STERILITY (RMS) for Rf17, a fertility restorer gene for Chinese wild rice (CW)-type CMS in rice (Oryza sativa L
Rf17|RMS	Os04g0475900	LOC_Os04g40020	sterility	Suppressed expression of Retrograde-Regulated Male Sterility restores pollen fertility in cytoplasmic male sterile rice plants	Through positional cloning, we identified a nuclear candidate gene, RETROGRADE-REGULATED MALE STERILITY (RMS) for Rf17, a fertility restorer gene for Chinese wild rice (CW)-type CMS in rice (Oryza sativa L
Rf1a|Rf5	Os10g0497300	LOC_Os10g35436	fertility	Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing	Two fertility restorer genes, Rf1a and Rf1b, were identified at the classical locus Rf-1 as members of a multigene cluster that encode pentatricopeptide repeat proteins
Rf1a|Rf5	Os10g0497300	LOC_Os10g35436	fertility	Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing	RF1A and RF1B are both targeted to mitochondria and can restore male fertility by blocking ORF79 production via endonucleolytic cleavage (RF1A) or degradation (RF1B) of dicistronic B-atp6/orf79 mRNA
Rf1a|Rf5	Os10g0497300	LOC_Os10g35436	mitochondria	Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing	RF1A and RF1B are both targeted to mitochondria and can restore male fertility by blocking ORF79 production via endonucleolytic cleavage (RF1A) or degradation (RF1B) of dicistronic B-atp6/orf79 mRNA
Rf1a|Rf5	Os10g0497300	LOC_Os10g35436	fertility	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162	In this study, we cloned the restorer gene Rf5 for Hong-Lian CMS in rice and studied its fertility restoration mechanism with respect to the processing of the CMS-associated transcript atp6-orfH79
Rf1a|Rf5	Os10g0497300	LOC_Os10g35436	fertility	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162	Furthermore, we found that RF5 and GRP162 are both components of a restoration of fertility complex (RFC) that is 400 to 500 kD in size and can cleave CMS-associated transcripts in vitro
Rf1a|Rf5	Os10g0497300	LOC_Os10g35436	fertility	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162
Rf1a|Rf5	Os10g0497300	LOC_Os10g35436	grain	Two non-allelic nuclear genes restore fertility in a gametophytic pattern and enhance abiotic stress tolerance in the hybrid rice plant	The hybrid F(1) plants containing one restorer gene, either Rf5 or Rf6, displayed 50% normal pollen grains with I(2)-KI solution; however, those with both Rf5 and Rf6 displayed 75% normal pollens
Rf1a|Rf5	Os10g0497300	LOC_Os10g35436	pollen	Two non-allelic nuclear genes restore fertility in a gametophytic pattern and enhance abiotic stress tolerance in the hybrid rice plant	The hybrid F(1) plants containing one restorer gene, either Rf5 or Rf6, displayed 50% normal pollen grains with I(2)-KI solution; however, those with both Rf5 and Rf6 displayed 75% normal pollens
Rf1a|Rf5	Os10g0497300	LOC_Os10g35436	sterile	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162	The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162
Rf1b	Os10g0499500	LOC_Os10g35640	fertility	Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing	Two fertility restorer genes, Rf1a and Rf1b, were identified at the classical locus Rf-1 as members of a multigene cluster that encode pentatricopeptide repeat proteins
Rf1b	Os10g0499500	LOC_Os10g35640	fertility	Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing	RF1A and RF1B are both targeted to mitochondria and can restore male fertility by blocking ORF79 production via endonucleolytic cleavage (RF1A) or degradation (RF1B) of dicistronic B-atp6/orf79 mRNA
Rf1b	Os10g0499500	LOC_Os10g35640	mitochondria	Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing	RF1A and RF1B are both targeted to mitochondria and can restore male fertility by blocking ORF79 production via endonucleolytic cleavage (RF1A) or degradation (RF1B) of dicistronic B-atp6/orf79 mRNA
Rf2	Os02g0274000	LOC_Os02g17380	sterility	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein
Rf2	Os02g0274000	LOC_Os02g17380	fertility	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein	In Lead Rice-type CMS, discovered in the indica variety 'Lead Rice', fertility of the CMS plant is restored by the single nuclear-encoded gene Rf2 in a gametophytic manner
Rf2	Os02g0274000	LOC_Os02g17380	fertility	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein	As Rf2 does not encode a pentatricopeptide repeat protein, unlike a majority of previously identified Rf genes, the data from this study provide new insights into the mechanism for restoring fertility in CMS
Rf2	Os02g0274000	LOC_Os02g17380	fertility	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein
Rf2	Os02g0274000	LOC_Os02g17380	anther	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein	Expression of Rf2 mRNA was detected in developing and mature anthers
Rf2	Os02g0274000	LOC_Os02g17380	mitochondria	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein	An RF2-GFP fusion was shown to be targeted to mitochondria
Rf2	Os02g0274000	LOC_Os02g17380	mitochondria	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	disease	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	shoot	RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development	RF2a, which stimulates Box II-dependent transcription in a homologous in vitro transcription system, accumulates in nuclei of phloem and certain other cell types in shoots, but is found at only very low levels in roots
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	leaf	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease	Conversely, lines with elevated expression of RF2a or RF2b showed weak or no symptoms of infection after Agrobacterium inoculation of RTBV, whereas control plants showed severe stunting and leaf discoloration
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	disease	RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease	RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	flower	Transcription factor RF2a alters expression of the rice tungro bacilliform virus promoter in transgenic tobacco plants	When a fusion gene comprising the cauliflower mosaic virus 35S promoter and RF2a cDNA was coexpressed with the GUS reporter genes, GUS activity was increased by 2-20-fold
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Transcription factor RF2a alters expression of the rice tungro bacilliform virus promoter in transgenic tobacco plants	Transcription factor RF2a alters expression of the rice tungro bacilliform virus promoter in transgenic tobacco plants
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Functional analysis of the activation domain of RF2a, a rice transcription factor	Rice transcription factor RF2a binds to the BoxII cis element of the promoter of rice tungro bacilliform virus and activates promoter expression
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Functional analysis of the activation domain of RF2a, a rice transcription factor	Functional analysis of the activation domain of RF2a, a rice transcription factor
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	vascular bundle	RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development	Transgenic antisense plants in which RF2a accumulation was suppressed had normal roots but stunted, twisted leaves with small, disorganized vascular bundles, an enlarged sclerenchyma and large air spaces
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease	Two host transcription factors, RF2a and RF2b, regulate expression of the RTBV promoter and are important for plant development
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	root	RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development	RF2a, which stimulates Box II-dependent transcription in a homologous in vitro transcription system, accumulates in nuclei of phloem and certain other cell types in shoots, but is found at only very low levels in roots
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	root	RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development	Transgenic antisense plants in which RF2a accumulation was suppressed had normal roots but stunted, twisted leaves with small, disorganized vascular bundles, an enlarged sclerenchyma and large air spaces
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System	We also demonstrate a physical interaction between OsTBP2 and RF2a, a rice bZIP transcription factor that bound to the box II cis element of the promoter of Rice tungro bacilliform virus, resulting in enhanced transcription from the viral promoter
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System	We conclude that OsTBP2 undergoes promoter-specific functional interactions with both the basal transcription factor OsTFIIB and the accessory transcription factor RF2a
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System	Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Functional analysis of RF2a, a rice transcription factor	RF2a is a bZIP transcription factor that regulates expression of the promoter of rice tungro bacilliform badnavirus
RF2a|OsbZIP75	Os09g0516200	LOC_Os09g34060	transcription factor	Functional analysis of RF2a, a rice transcription factor	Functional analysis of RF2a, a rice transcription factor
RF2b|OsbZIP30	Os03g0336200	LOC_Os03g21800	leaf	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease	Conversely, lines with elevated expression of RF2a or RF2b showed weak or no symptoms of infection after Agrobacterium inoculation of RTBV, whereas control plants showed severe stunting and leaf discoloration
RF2b|OsbZIP30	Os03g0336200	LOC_Os03g21800	disease	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease
RF2b|OsbZIP30	Os03g0336200	LOC_Os03g21800	disease	RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease	Furthermore, transgenic rice plants with reduced levels of RF2b exhibit a disease-like phenotype
RF2b|OsbZIP30	Os03g0336200	LOC_Os03g21800	disease	RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease	RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease
RF2b|OsbZIP30	Os03g0336200	LOC_Os03g21800	transcription factor	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease	Two host transcription factors, RF2a and RF2b, regulate expression of the RTBV promoter and are important for plant development
RF2b|OsbZIP30	Os03g0336200	LOC_Os03g21800	transcription factor	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease
Rf4|PPR782a	Os10g0495200	LOC_Os10g35240	pollen	A fertility restorer gene, Rf4, widely used for hybrid rice breeding encodes a pentatricopeptide repeat protein.	We revealed that Rf4 encoded a pentatricopeptide repeat-containing protein and reduced the orf352-containing transcripts, thereby restoring pollen fertility
Rf4|PPR782a	Os10g0495200	LOC_Os10g35240	map-based cloning	A fertility restorer gene, Rf4, widely used for hybrid rice breeding encodes a pentatricopeptide repeat protein.	Through a map-based cloning, we have independently identified an allele of a recently reported Rf4 gene and demonstrated that the fertility restoration is controlled sporophytically
Rf4|PPR782a	Os10g0495200	LOC_Os10g35240	fertility	A fertility restorer gene, Rf4, widely used for hybrid rice breeding encodes a pentatricopeptide repeat protein.	We revealed that Rf4 encoded a pentatricopeptide repeat-containing protein and reduced the orf352-containing transcripts, thereby restoring pollen fertility
Rf4|PPR782a	Os10g0495200	LOC_Os10g35240	fertility	A fertility restorer gene, Rf4, widely used for hybrid rice breeding encodes a pentatricopeptide repeat protein.	Through a map-based cloning, we have independently identified an allele of a recently reported Rf4 gene and demonstrated that the fertility restoration is controlled sporophytically
RF6	Os08g0110200	LOC_Os08g01870	fertility	Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines.	Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines.
RF6	Os08g0110200	LOC_Os08g01870	seed	Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines.	The BT-type F(1) hybrids with either Rf5 or Rf6 exhibited normal seed setting rates, but F(1) plants carrying Rf6 showed more stable seed setting rates than those of plants carrying Rf5 under heat-stress conditions
RF6	Os08g0110200	LOC_Os08g01870	seed	Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines.	Furthermore, the seed setting rates of F(1) hybrids carrying both Rf5 and Rf6 were more stable than that of F(1) plants carrying only one Rf gene
RF6	Os08g0110200	LOC_Os08g01870	breeding	Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines.	CONCLUSION: Rf6 is an important genetic resource for the breeding of BT-type japonica restorer lines
RF6	Os08g0110200	LOC_Os08g01870	sterile	Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines.	Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines.
RF6	Os08g0110200	LOC_Os08g01870	development	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	RF6 is targeted to mitochondria, where it physically associates with hexokinase 6 (OsHXK6) and promotes the processing of the aberrant CMS-associated transcript atp6-orfH79 at nucleotide 1238, which ensures normal pollen development and restores fertility
RF6	Os08g0110200	LOC_Os08g01870	fertility	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	RF6 is targeted to mitochondria, where it physically associates with hexokinase 6 (OsHXK6) and promotes the processing of the aberrant CMS-associated transcript atp6-orfH79 at nucleotide 1238, which ensures normal pollen development and restores fertility
RF6	Os08g0110200	LOC_Os08g01870	fertility	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	The duplicated motif 3 of RF6 is essential for RF6-OsHXK6 interactions, processing of the aberrant transcript, and restoration of fertility
RF6	Os08g0110200	LOC_Os08g01870	fertility	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	Together these results reveal a novel mechanism for CMS restoration by which RF6 functions with OsHXK6 to restore HL-CMS fertility
RF6	Os08g0110200	LOC_Os08g01870	pollen	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	The HL-CMS trait is associated with an aberrant chimeric mitochondrial transcript, atp6-orfH79, which causes pollen sterility and can be rescued by two nonallelic restorer-of-fertility (Rf) genes, Rf5 or Rf6
RF6	Os08g0110200	LOC_Os08g01870	pollen	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	RF6 is targeted to mitochondria, where it physically associates with hexokinase 6 (OsHXK6) and promotes the processing of the aberrant CMS-associated transcript atp6-orfH79 at nucleotide 1238, which ensures normal pollen development and restores fertility
RF6	Os08g0110200	LOC_Os08g01870	sterility	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	The HL-CMS trait is associated with an aberrant chimeric mitochondrial transcript, atp6-orfH79, which causes pollen sterility and can be rescued by two nonallelic restorer-of-fertility (Rf) genes, Rf5 or Rf6
RF6	Os08g0110200	LOC_Os08g01870	male sterility	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.
RF6	Os08g0110200	LOC_Os08g01870	pollen development	Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	RF6 is targeted to mitochondria, where it physically associates with hexokinase 6 (OsHXK6) and promotes the processing of the aberrant CMS-associated transcript atp6-orfH79 at nucleotide 1238, which ensures normal pollen development and restores fertility
Rf98|PPR762	None	None	seed	A Gene Encoding Pentatricopeptide Repeat Protein Partially Restores Fertility in RT98-Type Cytoplasmic Male-Sterile Rice	Here, we identified seven pentatricopeptide repeat (PPR) genes that are located within a 170 kb region as candidates for Rf98 Complementation tests revealed that the introduction of one of these PPR genes, PPR762, resulted in the partial recovery of fertility with a seed setting rate up to 9
Rf98|PPR762	None	None	seed	A Gene Encoding Pentatricopeptide Repeat Protein Partially Restores Fertility in RT98-Type Cytoplasmic Male-Sterile Rice	The low rate of seed setting suggested that some other genes near the Rf98 locus are also necessary for the full recovery of seed setting
Rf98|PPR762	None	None	fertility	A Gene Encoding Pentatricopeptide Repeat Protein Partially Restores Fertility in RT98-Type Cytoplasmic Male-Sterile Rice	Fine mapping of Rf98 revealed that at least two genes, which are closely positioned, are required for complete fertility restoration in RT98A
Rf98|PPR762	None	None	fertility	A Gene Encoding Pentatricopeptide Repeat Protein Partially Restores Fertility in RT98-Type Cytoplasmic Male-Sterile Rice	Here, we identified seven pentatricopeptide repeat (PPR) genes that are located within a 170 kb region as candidates for Rf98 Complementation tests revealed that the introduction of one of these PPR genes, PPR762, resulted in the partial recovery of fertility with a seed setting rate up to 9
RFC3	Os05g0230600	LOC_Os05g14170	mitochondria	The rice DUF1620-containing and WD40-like repeat protein is required for the assembly of the restoration of fertility complex.	We established that RFC3 interacts with both RF5 and GRP162 in vitro and in vivo, and is transported into the mitochondria as a membrane protein
rFKBP64	Os08g0525600	LOC_Os08g41390	root	The expression of the large rice FK506 binding proteins (FKBPs) demonstrate tissue specificity and heat stress responsiveness	The expression of rFKBP64 at RNA level was elevated by heat stress in roots and shoots and low in mature leaves
rFKBP64	Os08g0525600	LOC_Os08g41390	shoot	The expression of the large rice FK506 binding proteins (FKBPs) demonstrate tissue specificity and heat stress responsiveness	The expression of rFKBP64 at RNA level was elevated by heat stress in roots and shoots and low in mature leaves
rFKBP75	Os02g0491400	LOC_Os02g28980	endosperm	The expression of the large rice FK506 binding proteins (FKBPs) demonstrate tissue specificity and heat stress responsiveness	The only FKBP to be expressed in seeds was the rFKBP75 which was higher in the embryos and endosperm of dry seeds then in the same organs separated from imbibed seeds, indicating that the protein is important in the steps of seed maturation
rFKBP75	Os02g0491400	LOC_Os02g28980	seed	The expression of the large rice FK506 binding proteins (FKBPs) demonstrate tissue specificity and heat stress responsiveness	The only FKBP to be expressed in seeds was the rFKBP75 which was higher in the embryos and endosperm of dry seeds then in the same organs separated from imbibed seeds, indicating that the protein is important in the steps of seed maturation
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	architecture	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Our data provide mechanistic insights into a unique role for RFL in determining the typical rice plant architecture by regulating distinct downstream pathways
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	architecture	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	These results offer a means to alter rice flowering time and plant architecture by manipulating RFL-mediated pathways
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	architecture	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flower	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	To better understand the molecular mechanisms that regulate inflorescence and flower architecture, we characterized the rice aberrant panicle organization 2 (apo2) mutant which exhibits small panicles with reduced number of primary branches due to the precocious formation of spikelet meristems
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flower	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	The apo2 mutants also display a shortened plastochron in the vegetative phase, late flowering, aberrant floral organ identities and loss of floral meristem determinacy
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flower	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	Further analysis indicated that APO2/RFL and APO1, the rice ortholog of Arabidopsis UNUSUAL FLORAL ORGANS, act cooperatively to control inflorescence and flower development
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	To better understand the molecular mechanisms that regulate inflorescence and flower architecture, we characterized the rice aberrant panicle organization 2 (apo2) mutant which exhibits small panicles with reduced number of primary branches due to the precocious formation of spikelet meristems
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Aside from facilitating a transition of the main growth axis to an inflorescence meristem, RFL expression status affects vegetative axillary meristems and therefore regulates tillering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	The unique spatially and temporally regulated RFL expression during the development of vegetative axillary bud (tiller) primordia and inflorescence branch primordia is therefore required to produce tillers and panicle branches, respectively
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	reproductive	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Diverse orthologous LFY genes regulate vegetative-to-reproductive phase transition when expressed in Arabidopsis, a property not shared by RFL, the homolog in the agronomically important grass, rice
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	reproductive	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	After the transition to reproductive stage, RFL RNA was detected in all layers of very young panicle including the apical meristem, but absent in the incipient primary branches
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	inflorescence	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	Further analysis indicated that APO2/RFL and APO1, the rice ortholog of Arabidopsis UNUSUAL FLORAL ORGANS, act cooperatively to control inflorescence and flower development
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	inflorescence	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	In particular, APO2/RFL and LFY act oppositely on inflorescence development
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	inflorescence	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	Northern analysis showed that RFL is expressed predominantly in very young panicle but not in mature florets, mature leaves, or roots
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	After the transition to reproductive stage, RFL RNA was detected in all layers of very young panicle including the apical meristem, but absent in the incipient primary branches
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	Expression pattern of RFL raised a possibility that, unlike FLO and LFY, RFL might be involved in panicle branching
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	growth	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	In situ hybridization revealed that RFL RNA was expressed in epidermal cells in young leaves at vegetative growth stage
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral meristem	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	spikelet	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	To better understand the molecular mechanisms that regulate inflorescence and flower architecture, we characterized the rice aberrant panicle organization 2 (apo2) mutant which exhibits small panicles with reduced number of primary branches due to the precocious formation of spikelet meristems
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	root	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	Northern analysis showed that RFL is expressed predominantly in very young panicle but not in mature florets, mature leaves, or roots
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	axillary meristem	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Aside from facilitating a transition of the main growth axis to an inflorescence meristem, RFL expression status affects vegetative axillary meristems and therefore regulates tillering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	leaf	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	Map-based cloning revealed that APO2 is identical to previously reported RFL gene, the rice ortholog of the Arabidopsis LEAFY (LFY) gene
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	growth	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Aside from facilitating a transition of the main growth axis to an inflorescence meristem, RFL expression status affects vegetative axillary meristems and therefore regulates tillering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flowering time	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	In these transgenics, the expression levels of known flowering time genes reveal RFL as a regulator of OsSOC1 (OsMADS50), an activator of flowering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flowering time	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	These results offer a means to alter rice flowering time and plant architecture by manipulating RFL-mediated pathways
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flowering time	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flower	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	We find that reduction in RFL expression causes a dramatic delay in transition to flowering, with the extreme phenotype being no flowering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flower	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Conversely, RFL overexpression triggers precocious flowering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flower	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	In these transgenics, the expression levels of known flowering time genes reveal RFL as a regulator of OsSOC1 (OsMADS50), an activator of flowering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flower	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	These results offer a means to alter rice flowering time and plant architecture by manipulating RFL-mediated pathways
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flower	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	Further analysis indicated that APO2/RFL and APO1, the rice ortholog of Arabidopsis UNUSUAL FLORAL ORGANS, act cooperatively to control inflorescence and flower development
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral meristem	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	The apo2 mutants also display a shortened plastochron in the vegetative phase, late flowering, aberrant floral organ identities and loss of floral meristem determinacy
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral meristem	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	In 35S-RFL plants, transformation of inflorescence meristem to floral meristem was rarely observed
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	To better understand the molecular mechanisms that regulate inflorescence and flower architecture, we characterized the rice aberrant panicle organization 2 (apo2) mutant which exhibits small panicles with reduced number of primary branches due to the precocious formation of spikelet meristems
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	The apo2 mutants also display a shortened plastochron in the vegetative phase, late flowering, aberrant floral organ identities and loss of floral meristem determinacy
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	vegetative	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	In situ hybridization revealed that RFL RNA was expressed in epidermal cells in young leaves at vegetative growth stage
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	The apo2 mutants also display a shortened plastochron in the vegetative phase, late flowering, aberrant floral organ identities and loss of floral meristem determinacy
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	After the transition to reproductive stage, RFL RNA was detected in all layers of very young panicle including the apical meristem, but absent in the incipient primary branches
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	As development of branches proceeds, RFL RNA accumulation localized in the developing branches except for the apical meristems of the branches and secondary branch primordia
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	In 35S-RFL plants, transformation of inflorescence meristem to floral meristem was rarely observed
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	inflorescence	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	In 35S-RFL plants, transformation of inflorescence meristem to floral meristem was rarely observed
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	architecture	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	To better understand the molecular mechanisms that regulate inflorescence and flower architecture, we characterized the rice aberrant panicle organization 2 (apo2) mutant which exhibits small panicles with reduced number of primary branches due to the precocious formation of spikelet meristems
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	leaf	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	tillering	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Aside from facilitating a transition of the main growth axis to an inflorescence meristem, RFL expression status affects vegetative axillary meristems and therefore regulates tillering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	tiller	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Aside from facilitating a transition of the main growth axis to an inflorescence meristem, RFL expression status affects vegetative axillary meristems and therefore regulates tillering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	tiller	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	The unique spatially and temporally regulated RFL expression during the development of vegetative axillary bud (tiller) primordia and inflorescence branch primordia is therefore required to produce tillers and panicle branches, respectively
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	inflorescence	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Aside from facilitating a transition of the main growth axis to an inflorescence meristem, RFL expression status affects vegetative axillary meristems and therefore regulates tillering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	inflorescence	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	The unique spatially and temporally regulated RFL expression during the development of vegetative axillary bud (tiller) primordia and inflorescence branch primordia is therefore required to produce tillers and panicle branches, respectively
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	vegetative	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	The apo2 mutants also display a shortened plastochron in the vegetative phase, late flowering, aberrant floral organ identities and loss of floral meristem determinacy
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	vegetative	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Diverse orthologous LFY genes regulate vegetative-to-reproductive phase transition when expressed in Arabidopsis, a property not shared by RFL, the homolog in the agronomically important grass, rice
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	vegetative	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	Aside from facilitating a transition of the main growth axis to an inflorescence meristem, RFL expression status affects vegetative axillary meristems and therefore regulates tillering
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	vegetative	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture	The unique spatially and temporally regulated RFL expression during the development of vegetative axillary bud (tiller) primordia and inflorescence branch primordia is therefore required to produce tillers and panicle branches, respectively
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	stamen	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	Instead, development of cotyledons, rosette leaves, petals, and stamens was severely affected, demonstrating that RFL function is distinct from that of LFY
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	branching	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	Expression pattern of RFL raised a possibility that, unlike FLO and LFY, RFL might be involved in panicle branching
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	inflorescence	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	To better understand the molecular mechanisms that regulate inflorescence and flower architecture, we characterized the rice aberrant panicle organization 2 (apo2) mutant which exhibits small panicles with reduced number of primary branches due to the precocious formation of spikelet meristems
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	To examine whether same mechanisms control floral development in distantly related species such as grasses, we isolated RFL, FLO-LFY homolog of rice, and examined its expression and function
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	In 35S-RFL plants, transformation of inflorescence meristem to floral meristem was rarely observed
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	flower	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation	Transgenic Arabidopsis plants constitutively expressing RFL from the cauliflower mosaic virus 35S promoter were produced to test whether 35S-RFL would cause similar phenotype as observed in 35S-LFY plants
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	spikelet meristem	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1	To better understand the molecular mechanisms that regulate inflorescence and flower architecture, we characterized the rice aberrant panicle organization 2 (apo2) mutant which exhibits small panicles with reduced number of primary branches due to the precocious formation of spikelet meristems
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Previous studies showed that knockdown of the transcription factor gene RFL reduced tillering and caused a very large decrease in panicle branching
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	transcription factor	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Previous studies showed that knockdown of the transcription factor gene RFL reduced tillering and caused a very large decrease in panicle branching
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	vegetative	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	culm	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Further, we report reduced expression of auxin transporter genes OsPIN1 and OsPIN3 in the culm of RFL knockdown transgenic plants
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	auxin	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Further, we report reduced expression of auxin transporter genes OsPIN1 and OsPIN3 in the culm of RFL knockdown transgenic plants
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	auxin	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Additionally, subtle change in the spatial pattern of IR4 DR5:GFP auxin reporter was observed, which hints at compromised auxin transport on RFL knockdown
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	auxin	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Together, we have found that RFL regulates the LAX1 and CUC genes during AM specification, and positively influences the outgrowth of AMs though its effects on auxin transport
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	branching	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Previous studies showed that knockdown of the transcription factor gene RFL reduced tillering and caused a very large decrease in panicle branching
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	transporter	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Further, we report reduced expression of auxin transporter genes OsPIN1 and OsPIN3 in the culm of RFL knockdown transgenic plants
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	tillering	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Previous studies showed that knockdown of the transcription factor gene RFL reduced tillering and caused a very large decrease in panicle branching
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	tillering	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	The relationship between RFL, strigolactone signalling, and bud outgrowth was studied by transcript analyses and by the tillering phenotype of transgenic plants knocked down for both RFL and D3
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	strigolactone	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	The relationship between RFL, strigolactone signalling, and bud outgrowth was studied by transcript analyses and by the tillering phenotype of transgenic plants knocked down for both RFL and D3
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	auxin transport	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Further, we report reduced expression of auxin transporter genes OsPIN1 and OsPIN3 in the culm of RFL knockdown transgenic plants
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	auxin transport	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Additionally, subtle change in the spatial pattern of IR4 DR5:GFP auxin reporter was observed, which hints at compromised auxin transport on RFL knockdown
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	auxin transport	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Together, we have found that RFL regulates the LAX1 and CUC genes during AM specification, and positively influences the outgrowth of AMs though its effects on auxin transport
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	axillary meristem	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	The in situ hybridization result showed that, when florets appear, RFL was expressed almost exclusively at the palea/lemma adaxial base adjacent to lodicules in the wild-type panicle
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	development	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	development	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	The results suggest that the far-upstream region of RFL may contain potential cis element(s) that are critical to define the precise spatial-temporal expression pattern of RFL for its function in floral development
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	A disruption of sequence integrity at 6292-bp upstream of RFL by a T-DNA insertion led to varied RFL expression patterns in floral meristem and floret in afo1 and caused the mutant phenotype
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	Here, we describe a rice aberrant floral organ 1 (afo1) mutant that was produced by a T-DNA insertion at 6292-bp upstream of the start codon of RFL
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	This insertion altered the expression of RFL in floral meristem (FM) and floret
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	The altered pattern of RFL expression in afo1 resulted in enlarged FMs, more floral organs, aberrant floral organ identity, and loss of FM determinacy
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	The results suggest that the far-upstream region of RFL may contain potential cis element(s) that are critical to define the precise spatial-temporal expression pattern of RFL for its function in floral development
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	A disruption of sequence integrity at 6292-bp upstream of RFL by a T-DNA insertion led to varied RFL expression patterns in floral meristem and floret in afo1 and caused the mutant phenotype
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	This insertion altered the expression of RFL in floral meristem (FM) and floret
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral meristem	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	A disruption of sequence integrity at 6292-bp upstream of RFL by a T-DNA insertion led to varied RFL expression patterns in floral meristem and floret in afo1 and caused the mutant phenotype
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral meristem	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	This insertion altered the expression of RFL in floral meristem (FM) and floret
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral organ	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	Here, we describe a rice aberrant floral organ 1 (afo1) mutant that was produced by a T-DNA insertion at 6292-bp upstream of the start codon of RFL
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	floral organ	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	The altered pattern of RFL expression in afo1 resulted in enlarged FMs, more floral organs, aberrant floral organ identity, and loss of FM determinacy
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	organ identity	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	The altered pattern of RFL expression in afo1 resulted in enlarged FMs, more floral organs, aberrant floral organ identity, and loss of FM determinacy
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	 Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	grain	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	 Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	grain number	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	 Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle size	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice	 Genetic analyses support that LARGE2 functions with APO1 and APO2 in a common pathway to regulate panicle size and grain number
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	development	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 Our findings indicate that APO2 acts as a master regulator of rice panicle development by regulating multiple steps in the reproductive transition through directly controlling a set of genes
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 APO2 is a positive regulator of panicle branch formation
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 These analyses showed that APO2 directly controls known regulators of panicle development, including SQUAMOSA PROMOTER BINDING PROTEIN LIKE14 and NECK LEAF1
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 Furthermore, we revealed that a set of genes act as downstream regulators of APO2 in controlling meristem cell proliferation during reproductive transition, bract suppression, and panicle branch formation
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 Our findings indicate that APO2 acts as a master regulator of rice panicle development by regulating multiple steps in the reproductive transition through directly controlling a set of genes
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 Here, we show that APO2 is also required to increase the meristem size of the IM and suppress bract outgrowth
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	meristem	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 Furthermore, we revealed that a set of genes act as downstream regulators of APO2 in controlling meristem cell proliferation during reproductive transition, bract suppression, and panicle branch formation
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	reproductive	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 Furthermore, we revealed that a set of genes act as downstream regulators of APO2 in controlling meristem cell proliferation during reproductive transition, bract suppression, and panicle branch formation
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	reproductive	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 Our findings indicate that APO2 acts as a master regulator of rice panicle development by regulating multiple steps in the reproductive transition through directly controlling a set of genes
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	cell proliferation	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 Furthermore, we revealed that a set of genes act as downstream regulators of APO2 in controlling meristem cell proliferation during reproductive transition, bract suppression, and panicle branch formation
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle development	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 These analyses showed that APO2 directly controls known regulators of panicle development, including SQUAMOSA PROMOTER BINDING PROTEIN LIKE14 and NECK LEAF1
RFL|APO2|SSC|LFY	Os04g0598300	LOC_Os04g51000	panicle development	ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes.	 Our findings indicate that APO2 acts as a master regulator of rice panicle development by regulating multiple steps in the reproductive transition through directly controlling a set of genes
RGA4	None	None	magnaporthe oryzae	The rice resistance protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1-CO39 by direct binding	Two NB-LRR protein-coding genes from rice (Oryza sativa), RGA4 and RGA5, were found to be required for the recognition of the Magnaporthe oryzae effector AVR1-CO39
RGA4	None	None	magnaporthe oryzae	The rice resistance protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1-CO39 by direct binding	The rice resistance protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1-CO39 by direct binding
RGA5	None	None	magnaporthe oryzae	The rice resistance protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1-CO39 by direct binding	Two NB-LRR protein-coding genes from rice (Oryza sativa), RGA4 and RGA5, were found to be required for the recognition of the Magnaporthe oryzae effector AVR1-CO39
RGA5	None	None	magnaporthe oryzae	The rice resistance protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1-CO39 by direct binding	The rice resistance protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1-CO39 by direct binding
RGA5	None	None	magnaporthe oryzae	Recognition of the Magnaporthe oryzae effector AVR-Pia by the decoy domain of the rice NLR immune receptor RGA5.	The rice NLR RGA5 recognizes the Magnaporthe oryzae effector AVR-Pia through direct interaction
RGA5	None	None	magnaporthe oryzae	New recognition specificity in a plant immune receptor by molecular engineering of its integrated domain.	 We relied for this on detailed knowledge on the recognition of the Magnaporthe oryzae effectors AVR-PikD, AVR-Pia, and AVR1-CO39 by, respectively, the rice NLRs Pikp-1 and RGA5
RGA5	None	None	blast	The activity of the RGA5 sensor NLR from rice requires binding of its integrated HMA domain to effectors but not HMA domain self-interaction.	The rice nucleotide-binding (NB) and leucine-rich repeat (LRR) domain immune receptors (NLRs) RGA4 and RGA5 form a helper NLR/sensor NLR (hNLR/sNLR) pair that specifically recognizes the effectors AVR-Pia and AVR1-CO39 from the blast fungus Magnaporthe oryzae
RGA5	None	None	magnaporthe oryzae	The activity of the RGA5 sensor NLR from rice requires binding of its integrated HMA domain to effectors but not HMA domain self-interaction.	The rice nucleotide-binding (NB) and leucine-rich repeat (LRR) domain immune receptors (NLRs) RGA4 and RGA5 form a helper NLR/sensor NLR (hNLR/sNLR) pair that specifically recognizes the effectors AVR-Pia and AVR1-CO39 from the blast fungus Magnaporthe oryzae
RGA5	None	None	cell death	The activity of the RGA5 sensor NLR from rice requires binding of its integrated HMA domain to effectors but not HMA domain self-interaction.	 By analysing structure-informed point mutations in the RGA5(HMA) -binding surface in protein interaction studies and in Nicotiana benthamiana cell death assays, we found that HMA self-interaction does not contribute to RGA5 function
RGAe|Hwc3	Os04g0621900	LOC_Os04g53060	hybrid weakness	A novel discovery of a long terminal repeat retrotransposon-induced hybrid weakness in rice	A 4-kb DNA fragment from CH7 containing the Hwc3 gene with the inserted LTR retrotransposon was able to induce hybrid weakness in hybrids with CH8 plants carrying the Hwc1 gene by genetic complementation.
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	cellular proliferation	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions	The RGB1 knock-down lines generated in d1-5 were shorter, suggesting RGB1 to be a positive regulator of cellular proliferation, in addition to RGA1
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	seed	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions	The number of sterile seeds also increased in both RGB1 knock-down lines
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	dwarf	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	lamina	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions	Both transgenic lines showed browning of the lamina joint regions and nodes that could be attributed to a reduction of RGB1 function, as the abnormality was not observed in d1-5
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	lamina	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	sterile	Suppression of the rice heterotrimeric G protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions	The number of sterile seeds also increased in both RGB1 knock-down lines
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	drought	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	drought	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	In contrast, mRNA levels of RGB1 (rice Gβ subunit) were significantly upregulated by ABA treatment and the lack of RGB1 led to reduced drought tolerance
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	drought	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Furthermore, the results suggested that qPE9-1 negatively regulates the ABA response by suppressing the expression of key transcription factors involved in ABA and stress responses, while RGB1 positively regulates ABA biosynthesis by upregulating NCED gene expression under both normal and drought stress conditions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	drought	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Taken together, it is proposed that RGB1 is a positive regulator of the ABA response and drought adaption in rice plants, whereas qPE9-1 is modulated by RGB1 and functions as a negative regulator in the ABA-dependent drought-stress responses
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	tolerance	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	In contrast, mRNA levels of RGB1 (rice Gβ subunit) were significantly upregulated by ABA treatment and the lack of RGB1 led to reduced drought tolerance
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	transcription factor	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Furthermore, the results suggested that qPE9-1 negatively regulates the ABA response by suppressing the expression of key transcription factors involved in ABA and stress responses, while RGB1 positively regulates ABA biosynthesis by upregulating NCED gene expression under both normal and drought stress conditions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	ABA	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	In contrast, mRNA levels of RGB1 (rice Gβ subunit) were significantly upregulated by ABA treatment and the lack of RGB1 led to reduced drought tolerance
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	ABA	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Furthermore, the results suggested that qPE9-1 negatively regulates the ABA response by suppressing the expression of key transcription factors involved in ABA and stress responses, while RGB1 positively regulates ABA biosynthesis by upregulating NCED gene expression under both normal and drought stress conditions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	ABA	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Taken together, it is proposed that RGB1 is a positive regulator of the ABA response and drought adaption in rice plants, whereas qPE9-1 is modulated by RGB1 and functions as a negative regulator in the ABA-dependent drought-stress responses
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	drought tolerance	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	In contrast, mRNA levels of RGB1 (rice Gβ subunit) were significantly upregulated by ABA treatment and the lack of RGB1 led to reduced drought tolerance
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	stress	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Furthermore, the results suggested that qPE9-1 negatively regulates the ABA response by suppressing the expression of key transcription factors involved in ABA and stress responses, while RGB1 positively regulates ABA biosynthesis by upregulating NCED gene expression under both normal and drought stress conditions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	ABA	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	In contrast, mRNA levels of RGB1 (rice Gβ subunit) were significantly upregulated by ABA treatment and the lack of RGB1 led to reduced drought tolerance
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	ABA	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Furthermore, the results suggested that qPE9-1 negatively regulates the ABA response by suppressing the expression of key transcription factors involved in ABA and stress responses, while RGB1 positively regulates ABA biosynthesis by upregulating NCED gene expression under both normal and drought stress conditions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	ABA	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Taken together, it is proposed that RGB1 is a positive regulator of the ABA response and drought adaption in rice plants, whereas qPE9-1 is modulated by RGB1 and functions as a negative regulator in the ABA-dependent drought-stress responses
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	drought stress	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Furthermore, the results suggested that qPE9-1 negatively regulates the ABA response by suppressing the expression of key transcription factors involved in ABA and stress responses, while RGB1 positively regulates ABA biosynthesis by upregulating NCED gene expression under both normal and drought stress conditions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	drought stress	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Furthermore, the results suggested that qPE9-1 negatively regulates the ABA response by suppressing the expression of key transcription factors involved in ABA and stress responses, while RGB1 positively regulates ABA biosynthesis by upregulating NCED gene expression under both normal and drought stress conditions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	abscisic acid	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	stress response	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Furthermore, the results suggested that qPE9-1 negatively regulates the ABA response by suppressing the expression of key transcription factors involved in ABA and stress responses, while RGB1 positively regulates ABA biosynthesis by upregulating NCED gene expression under both normal and drought stress conditions
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	stress response	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	Taken together, it is proposed that RGB1 is a positive regulator of the ABA response and drought adaption in rice plants, whereas qPE9-1 is modulated by RGB1 and functions as a negative regulator in the ABA-dependent drought-stress responses
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	seedlings	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	The dynamic anatomical characteristics of the embryos of the rgb1 seedlings and WT during early postgermination and according to TUNEL assays showed that the suppressed growth of the rgb1 mutants was caused by cell death
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	root	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	In addition to the limited shoot and root development, the development of the embryo shoot-root axis was suppressed in the rgb1 mutants
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	root	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	RGB1 was expressed mainly in the root epidermal and vascular tissues of the embryo
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	growth	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	The heterotrimeric G protein β subunit RGB1 plays an important role in plant growth and development
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	growth	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	However, the molecular mechanisms underlying the regulation of rice growth by RGB1 remain elusive
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	growth	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	The dynamic anatomical characteristics of the embryos of the rgb1 seedlings and WT during early postgermination and according to TUNEL assays showed that the suppressed growth of the rgb1 mutants was caused by cell death
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	shoot	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	In addition to the limited shoot and root development, the development of the embryo shoot-root axis was suppressed in the rgb1 mutants
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	seedling	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	seedling	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	Here, the rgb1 mutants rgb1-1 (+ 1 bp), rgb1-2 (- 1 bp), and rgb1-3 (- 11 bp) were isolated using the CRISPR/Cas9 system, and they were arrested at 1 day after germination and ultimately exhibited seedling lethality
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	seedling	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	Moreover, transcript profiling analysis revealed that the expression of a large number of auxin-, cytokinin-, and brassinosteroid-inducible genes was upregulated or downregulated in the rgb1 mutant compared to the wild type during seedling development
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	seedling	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	Overall, the rgb1 mutants provide an ideal material for exploring the molecular mechanism underlying rice seedling formation during early postgermination development by G proteins
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	seedling	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	The heterotrimeric G protein β subunit RGB1 acts as a crucial factor in promoting early postgermination seedling development in rice
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	development	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	The heterotrimeric G protein β subunit RGB1 plays an important role in plant growth and development
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	development	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	In addition to the limited shoot and root development, the development of the embryo shoot-root axis was suppressed in the rgb1 mutants
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	development	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	Moreover, transcript profiling analysis revealed that the expression of a large number of auxin-, cytokinin-, and brassinosteroid-inducible genes was upregulated or downregulated in the rgb1 mutant compared to the wild type during seedling development
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	development	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	Overall, the rgb1 mutants provide an ideal material for exploring the molecular mechanism underlying rice seedling formation during early postgermination development by G proteins
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	development	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	The heterotrimeric G protein β subunit RGB1 acts as a crucial factor in promoting early postgermination seedling development in rice
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	root development	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	In addition to the limited shoot and root development, the development of the embryo shoot-root axis was suppressed in the rgb1 mutants
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	cell death	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	The dynamic anatomical characteristics of the embryos of the rgb1 seedlings and WT during early postgermination and according to TUNEL assays showed that the suppressed growth of the rgb1 mutants was caused by cell death
RGB1|OsRGB1	Os03g0669200	LOC_Os03g46650	plant growth	The heterotrimeric G protein β subunit RGB1 is required for seedling formation in rice.	The heterotrimeric G protein β subunit RGB1 plays an important role in plant growth and development
RGG1	Os03g0635100	LOC_Os03g43480	salinity	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.
RGG1	Os03g0635100	LOC_Os03g43480	salinity	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	The present study provides evidence of a unique function of RGG1 in providing salinity stress tolerance in transgenic rice without affecting yield
RGG1	Os03g0635100	LOC_Os03g43480	salinity	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	The overexpression of RGG1 driven by the CaMV35S promoter in transgenic rice conferred high salinity tolerance even in the presence of 200<U+00A0>mM NaCl
RGG1	Os03g0635100	LOC_Os03g43480	tolerance	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.
RGG1	Os03g0635100	LOC_Os03g43480	tolerance	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	The present study provides evidence of a unique function of RGG1 in providing salinity stress tolerance in transgenic rice without affecting yield
RGG1	Os03g0635100	LOC_Os03g43480	tolerance	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	The overexpression of RGG1 driven by the CaMV35S promoter in transgenic rice conferred high salinity tolerance even in the presence of 200<U+00A0>mM NaCl
RGG1	Os03g0635100	LOC_Os03g43480	yield	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	The present study provides evidence of a unique function of RGG1 in providing salinity stress tolerance in transgenic rice without affecting yield
RGG1	Os03g0635100	LOC_Os03g43480	salinity stress	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.
RGG1	Os03g0635100	LOC_Os03g43480	salinity stress	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	The present study provides evidence of a unique function of RGG1 in providing salinity stress tolerance in transgenic rice without affecting yield
RGG1	Os03g0635100	LOC_Os03g43480	stress	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.
RGG1	Os03g0635100	LOC_Os03g43480	stress	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	The present study provides evidence of a unique function of RGG1 in providing salinity stress tolerance in transgenic rice without affecting yield
RGG1	Os03g0635100	LOC_Os03g43480	stress tolerance	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.
RGG1	Os03g0635100	LOC_Os03g43480	stress tolerance	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	The present study provides evidence of a unique function of RGG1 in providing salinity stress tolerance in transgenic rice without affecting yield
RGG1	Os03g0635100	LOC_Os03g43480	tolerance	Concurrent overexpression of rice G-protein β and γ subunits provide enhanced tolerance to sheath blight disease and abiotic stress in rice.	Our study demonstrates that simultaneous overexpression of RGB1 and RGG1 genes provides multiple stress tolerance in rice by inducing stress responsive genes and better management of ROS scavenging/photosynthetic machineries
RGG1	Os03g0635100	LOC_Os03g43480	stress	Concurrent overexpression of rice G-protein β and γ subunits provide enhanced tolerance to sheath blight disease and abiotic stress in rice.	Our study demonstrates that simultaneous overexpression of RGB1 and RGG1 genes provides multiple stress tolerance in rice by inducing stress responsive genes and better management of ROS scavenging/photosynthetic machineries
RGG1	Os03g0635100	LOC_Os03g43480	stress tolerance	Concurrent overexpression of rice G-protein β and γ subunits provide enhanced tolerance to sheath blight disease and abiotic stress in rice.	Our study demonstrates that simultaneous overexpression of RGB1 and RGG1 genes provides multiple stress tolerance in rice by inducing stress responsive genes and better management of ROS scavenging/photosynthetic machineries
RGG1	Os03g0635100	LOC_Os03g43480	panicle	RGG1, Involved in the Cytokinin Regulatory Pathway, Controls Grain Size in Rice	Overexpression of RGG1 in Nipponbare (NIP) and Wuyunjing 30 (WYJ30) significantly decreased plant height, panicle length and grain length by regulating cell division
RGG1	Os03g0635100	LOC_Os03g43480	grain	RGG1, Involved in the Cytokinin Regulatory Pathway, Controls Grain Size in Rice	Overexpression of RGG1 in Nipponbare (NIP) and Wuyunjing 30 (WYJ30) significantly decreased plant height, panicle length and grain length by regulating cell division
RGG1	Os03g0635100	LOC_Os03g43480	grain length	RGG1, Involved in the Cytokinin Regulatory Pathway, Controls Grain Size in Rice	Overexpression of RGG1 in Nipponbare (NIP) and Wuyunjing 30 (WYJ30) significantly decreased plant height, panicle length and grain length by regulating cell division
RGG1	Os03g0635100	LOC_Os03g43480	cell division	RGG1, Involved in the Cytokinin Regulatory Pathway, Controls Grain Size in Rice	Overexpression of RGG1 in Nipponbare (NIP) and Wuyunjing 30 (WYJ30) significantly decreased plant height, panicle length and grain length by regulating cell division
RGG1	Os03g0635100	LOC_Os03g43480	plant height	RGG1, Involved in the Cytokinin Regulatory Pathway, Controls Grain Size in Rice	Overexpression of RGG1 in Nipponbare (NIP) and Wuyunjing 30 (WYJ30) significantly decreased plant height, panicle length and grain length by regulating cell division
RGG1	Os03g0635100	LOC_Os03g43480	panicle length	RGG1, Involved in the Cytokinin Regulatory Pathway, Controls Grain Size in Rice	Overexpression of RGG1 in Nipponbare (NIP) and Wuyunjing 30 (WYJ30) significantly decreased plant height, panicle length and grain length by regulating cell division
RGG2	Os02g0137800	LOC_Os02g04520	leaf	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By measuring the length of the second leaf sheath after gibberellin (GA3 ) treatment and the GA-induced amylase activity of seeds, we found that RGG2 is also involved in GA signaling
RGG2	Os02g0137800	LOC_Os02g04520	growth	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	The expression levels of RGG2 are significantly higher than those of other rice G -encoding genes in all tissues tested, suggesting that RGG2 plays essential roles in rice growth and development
RGG2	Os02g0137800	LOC_Os02g04520	growth	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	These results demonstrate that RGG2 acts as a negative regulator of plant growth and organ size in rice
RGG2	Os02g0137800	LOC_Os02g04520	grain	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By regulating cell expansion, RGG2 overexpression in Nipponbare (NIP) leads to reduced plant height and decreased grain size
RGG2	Os02g0137800	LOC_Os02g04520	grain	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	In summary, we propose that RGG2 may regulate grain and organ size via the GA pathway and that manipulation of RGG2 provides a novel strategy for rice grain yield enhancement
RGG2	Os02g0137800	LOC_Os02g04520	development	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	The expression levels of RGG2 are significantly higher than those of other rice G -encoding genes in all tissues tested, suggesting that RGG2 plays essential roles in rice growth and development
RGG2	Os02g0137800	LOC_Os02g04520	sheath	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By measuring the length of the second leaf sheath after gibberellin (GA3 ) treatment and the GA-induced amylase activity of seeds, we found that RGG2 is also involved in GA signaling
RGG2	Os02g0137800	LOC_Os02g04520	gibberellin	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By measuring the length of the second leaf sheath after gibberellin (GA3 ) treatment and the GA-induced amylase activity of seeds, we found that RGG2 is also involved in GA signaling
RGG2	Os02g0137800	LOC_Os02g04520	grain yield	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	In summary, we propose that RGG2 may regulate grain and organ size via the GA pathway and that manipulation of RGG2 provides a novel strategy for rice grain yield enhancement
RGG2	Os02g0137800	LOC_Os02g04520	yield	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	In summary, we propose that RGG2 may regulate grain and organ size via the GA pathway and that manipulation of RGG2 provides a novel strategy for rice grain yield enhancement
RGG2	Os02g0137800	LOC_Os02g04520	grain size	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By regulating cell expansion, RGG2 overexpression in Nipponbare (NIP) leads to reduced plant height and decreased grain size
RGG2	Os02g0137800	LOC_Os02g04520	ga	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By measuring the length of the second leaf sheath after gibberellin (GA3 ) treatment and the GA-induced amylase activity of seeds, we found that RGG2 is also involved in GA signaling
RGG2	Os02g0137800	LOC_Os02g04520	ga	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	In summary, we propose that RGG2 may regulate grain and organ size via the GA pathway and that manipulation of RGG2 provides a novel strategy for rice grain yield enhancement
RGG2	Os02g0137800	LOC_Os02g04520	height	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By regulating cell expansion, RGG2 overexpression in Nipponbare (NIP) leads to reduced plant height and decreased grain size
RGG2	Os02g0137800	LOC_Os02g04520	plant height	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By regulating cell expansion, RGG2 overexpression in Nipponbare (NIP) leads to reduced plant height and decreased grain size
RGG2	Os02g0137800	LOC_Os02g04520	Gibberellin	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By measuring the length of the second leaf sheath after gibberellin (GA3 ) treatment and the GA-induced amylase activity of seeds, we found that RGG2 is also involved in GA signaling
RGG2	Os02g0137800	LOC_Os02g04520	GA	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	By measuring the length of the second leaf sheath after gibberellin (GA3 ) treatment and the GA-induced amylase activity of seeds, we found that RGG2 is also involved in GA signaling
RGG2	Os02g0137800	LOC_Os02g04520	GA	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	In summary, we propose that RGG2 may regulate grain and organ size via the GA pathway and that manipulation of RGG2 provides a novel strategy for rice grain yield enhancement
RGG2	Os02g0137800	LOC_Os02g04520	organ size	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	These results demonstrate that RGG2 acts as a negative regulator of plant growth and organ size in rice
RGG2	Os02g0137800	LOC_Os02g04520	organ size	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	In summary, we propose that RGG2 may regulate grain and organ size via the GA pathway and that manipulation of RGG2 provides a novel strategy for rice grain yield enhancement
RGG2	Os02g0137800	LOC_Os02g04520	plant growth	Mutation of RGG2, which encodes a type B heterotrimeric G protein  subunit, increases grain size and yield production in rice.	These results demonstrate that RGG2 acts as a negative regulator of plant growth and organ size in rice
RGN1	Os01g0685400	LOC_Os01g49160	panicle	RGN1 controls grain number and shapes panicle architecture in rice	RGN1 controls grain number and shapes panicle architecture in rice
RGN1	Os01g0685400	LOC_Os01g49160	panicle	RGN1 controls grain number and shapes panicle architecture in rice	We demonstrated that RGN1 controls lateral grain formation by regulation of LONELY GUY (LOG) expression, thus controlling grain number and shaping panicle architecture
RGN1	Os01g0685400	LOC_Os01g49160	grain	RGN1 controls grain number and shapes panicle architecture in rice	RGN1 controls grain number and shapes panicle architecture in rice
RGN1	Os01g0685400	LOC_Os01g49160	grain	RGN1 controls grain number and shapes panicle architecture in rice	We demonstrated that RGN1 controls lateral grain formation by regulation of LONELY GUY (LOG) expression, thus controlling grain number and shaping panicle architecture
RGN1	Os01g0685400	LOC_Os01g49160	grain	RGN1 controls grain number and shapes panicle architecture in rice	Identification of RGN1 provides a theoretical basis for understanding the molecular mechanism of lateral grain formation in rice, RGN1 will be an important gene resource for molecular breeding for higher yield
RGN1	Os01g0685400	LOC_Os01g49160	grain number	RGN1 controls grain number and shapes panicle architecture in rice	RGN1 controls grain number and shapes panicle architecture in rice
RGN1	Os01g0685400	LOC_Os01g49160	grain number	RGN1 controls grain number and shapes panicle architecture in rice	We demonstrated that RGN1 controls lateral grain formation by regulation of LONELY GUY (LOG) expression, thus controlling grain number and shaping panicle architecture
RGN1	Os01g0685400	LOC_Os01g49160	yield	RGN1 controls grain number and shapes panicle architecture in rice	Identification of RGN1 provides a theoretical basis for understanding the molecular mechanism of lateral grain formation in rice, RGN1 will be an important gene resource for molecular breeding for higher yield
RGN1	Os01g0685400	LOC_Os01g49160	architecture	RGN1 controls grain number and shapes panicle architecture in rice	RGN1 controls grain number and shapes panicle architecture in rice
RGN1	Os01g0685400	LOC_Os01g49160	architecture	RGN1 controls grain number and shapes panicle architecture in rice	We demonstrated that RGN1 controls lateral grain formation by regulation of LONELY GUY (LOG) expression, thus controlling grain number and shaping panicle architecture
RGN1	Os01g0685400	LOC_Os01g49160	breeding	RGN1 controls grain number and shapes panicle architecture in rice	Identification of RGN1 provides a theoretical basis for understanding the molecular mechanism of lateral grain formation in rice, RGN1 will be an important gene resource for molecular breeding for higher yield
RGN1	Os01g0685400	LOC_Os01g49160	panicle architecture	RGN1 controls grain number and shapes panicle architecture in rice	RGN1 controls grain number and shapes panicle architecture in rice
RGN1	Os01g0685400	LOC_Os01g49160	panicle architecture	RGN1 controls grain number and shapes panicle architecture in rice	We demonstrated that RGN1 controls lateral grain formation by regulation of LONELY GUY (LOG) expression, thus controlling grain number and shaping panicle architecture
RGN1a	Os01g0690600	LOC_Os01g49580	grain	Natural variation of RGN1a regulates grain number per panicle in japonica rice.	Natural variation of RGN1a regulates grain number per panicle in japonica rice.
RGN1a	Os01g0690600	LOC_Os01g49580	grain	Natural variation of RGN1a regulates grain number per panicle in japonica rice.	 Furthermore, breeding utilization analysis revealed that the additive effects of the dominant allelic variants of RGN1a and DTH7 played a significant role in increasing the grain number per panicle in japonica rice
RGN1a	Os01g0690600	LOC_Os01g49580	panicle	Natural variation of RGN1a regulates grain number per panicle in japonica rice.	Natural variation of RGN1a regulates grain number per panicle in japonica rice.
RGN1a	Os01g0690600	LOC_Os01g49580	panicle	Natural variation of RGN1a regulates grain number per panicle in japonica rice.	 Furthermore, breeding utilization analysis revealed that the additive effects of the dominant allelic variants of RGN1a and DTH7 played a significant role in increasing the grain number per panicle in japonica rice
RGN1a	Os01g0690600	LOC_Os01g49580	grain number	Natural variation of RGN1a regulates grain number per panicle in japonica rice.	Natural variation of RGN1a regulates grain number per panicle in japonica rice.
RGN1a	Os01g0690600	LOC_Os01g49580	grain number	Natural variation of RGN1a regulates grain number per panicle in japonica rice.	 Furthermore, breeding utilization analysis revealed that the additive effects of the dominant allelic variants of RGN1a and DTH7 played a significant role in increasing the grain number per panicle in japonica rice
RGN1a	Os01g0690600	LOC_Os01g49580	breeding	Natural variation of RGN1a regulates grain number per panicle in japonica rice.	 Furthermore, breeding utilization analysis revealed that the additive effects of the dominant allelic variants of RGN1a and DTH7 played a significant role in increasing the grain number per panicle in japonica rice
RGP1	Os09g0281700	LOC_Os09g10940	seedling	A novel ras-related rgp1 gene encoding a GTP-binding protein has reduced expression in 5-azacytidine-induced dwarf rice	During seedling growth, rgp1 expression was first observed 14 days after germination, reaching a maximum level between 28 and 42 days, and gradually decreased thereafter until 63 days when it attained the same level of expression as in 14-day-old seedlings
RGP1	Os09g0281700	LOC_Os09g10940	starch	A reversibly glycosylated polypeptide (RGP1) possibly involved in plant cell wall synthesis: purification, gene cloning, and trans-Golgi localization	Corn (Zea mays) contains a biochemically similar and structurally homologous RGP1, which has been thought (it now seems mistakenly) to function in starch synthesis
RGP1	Os09g0281700	LOC_Os09g10940	growth	A novel ras-related rgp1 gene encoding a GTP-binding protein has reduced expression in 5-azacytidine-induced dwarf rice	During seedling growth, rgp1 expression was first observed 14 days after germination, reaching a maximum level between 28 and 42 days, and gradually decreased thereafter until 63 days when it attained the same level of expression as in 14-day-old seedlings
RGP1	Os09g0281700	LOC_Os09g10940	growth	A novel ras-related rgp1 gene encoding a GTP-binding protein has reduced expression in 5-azacytidine-induced dwarf rice	Expression of rgp1 was found to be markedly reduced throughout the growth period of both 5-azacytidine-induced dwarf plants and their progenies, relative to levels in untreated tall control plants
RGP1	Os09g0281700	LOC_Os09g10940	growth	A novel ras-related rgp1 gene encoding a GTP-binding protein has reduced expression in 5-azacytidine-induced dwarf rice	These results suggest that expression of rgp1 may be influenced, either directly or indirectly, by DNA methylation, and that the rgp1 protein may play an important role in plant growth and development
RGP1	Os09g0281700	LOC_Os09g10940	cellulose	A reversibly glycosylated polypeptide (RGP1) possibly involved in plant cell wall synthesis: purification, gene cloning, and trans-Golgi localization	Along with other evidence, this suggests that RGP1 is involved in synthesis of xyloglucan and possibly other hemicelluloses
RGP1	Os09g0281700	LOC_Os09g10940	cell wall	A reversibly glycosylated polypeptide (RGP1) possibly involved in plant cell wall synthesis: purification, gene cloning, and trans-Golgi localization	A reversibly glycosylated polypeptide (RGP1) possibly involved in plant cell wall synthesis: purification, gene cloning, and trans-Golgi localization
RGP1	Os09g0281700	LOC_Os09g10940	dwarf	A novel ras-related rgp1 gene encoding a GTP-binding protein has reduced expression in 5-azacytidine-induced dwarf rice	Expression of rgp1 was found to be markedly reduced throughout the growth period of both 5-azacytidine-induced dwarf plants and their progenies, relative to levels in untreated tall control plants
RGP1	Os09g0281700	LOC_Os09g10940	dwarf	A novel ras-related rgp1 gene encoding a GTP-binding protein has reduced expression in 5-azacytidine-induced dwarf rice	A novel ras-related rgp1 gene encoding a GTP-binding protein has reduced expression in 5-azacytidine-induced dwarf rice
rgp2	Os05g0280200	LOC_Os05g20050	root	Molecular characterization of rgp2, a gene encoding a small GTP-binding protein from rice	Northern blot analysis of rgp1 and rgp2 suggests that both genes show relatively high, but differential, levels of expression in leaves, stems and panicles, but low levels in roots
rgp2	Os05g0280200	LOC_Os05g20050	growth	Molecular characterization of rgp2, a gene encoding a small GTP-binding protein from rice	In addition, whereas rgp1 shows maximal expression at a particular stage of plantlet growth, rgp2 is constitutively expressed during the same period
rgp2	Os05g0280200	LOC_Os05g20050	stem	Molecular characterization of rgp2, a gene encoding a small GTP-binding protein from rice	Northern blot analysis of rgp1 and rgp2 suggests that both genes show relatively high, but differential, levels of expression in leaves, stems and panicles, but low levels in roots
rgp2	Os05g0280200	LOC_Os05g20050	panicle	Molecular characterization of rgp2, a gene encoding a small GTP-binding protein from rice	Northern blot analysis of rgp1 and rgp2 suggests that both genes show relatively high, but differential, levels of expression in leaves, stems and panicles, but low levels in roots
RHS1	Os04g0489800	LOC_Os04g41250	transcription factor	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 Interestingly, the basal expression levels of QSH1 and SHAT1 genes (transcription factors that regulate seed-pod shattering in rice) were significantly lower in these plants than in wild-type plants; however, nitrosative stress negatively regulated the expression of QSH1 and SHAT1 in both WT and rhs1 plants, but positively regulated QSH4 expression in rhs1 plants alone
RHS1	Os04g0489800	LOC_Os04g41250	stress	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 The absence of RHS1, which encodes a putative armadillo/beta-catenin repeat family protein, resulted in high sensitivity of the rhs1 plants to nitrosative stress
RHS1	Os04g0489800	LOC_Os04g41250	stress	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 Interestingly, the basal expression levels of QSH1 and SHAT1 genes (transcription factors that regulate seed-pod shattering in rice) were significantly lower in these plants than in wild-type plants; however, nitrosative stress negatively regulated the expression of QSH1 and SHAT1 in both WT and rhs1 plants, but positively regulated QSH4 expression in rhs1 plants alone
RHS1	Os04g0489800	LOC_Os04g41250	seed	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 The expression of CPL1 (a negative regulator of seed shattering in rice) was significantly lower in rhs1 plants, and we found that CPL1 expression was correlated with S-nitrosothiol (SNO) alteration in rhs1
RHS1	Os04g0489800	LOC_Os04g41250	seed	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 Interestingly noe1, a rice mutant with high SNO levels, exhibited low seed shattering, whereas rhs1 resulted in low SNO levels with high seed shattering
RHS1	Os04g0489800	LOC_Os04g41250	shattering	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.
RHS1	Os04g0489800	LOC_Os04g41250	shattering	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 The knockout mutant line rhs1 exhibited a significantly high shattering of grains in comparison to the wild-type plants
RHS1	Os04g0489800	LOC_Os04g41250	shattering	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 Interestingly, the basal expression levels of QSH1 and SHAT1 genes (transcription factors that regulate seed-pod shattering in rice) were significantly lower in these plants than in wild-type plants; however, nitrosative stress negatively regulated the expression of QSH1 and SHAT1 in both WT and rhs1 plants, but positively regulated QSH4 expression in rhs1 plants alone
RHS1	Os04g0489800	LOC_Os04g41250	shattering	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 The expression of CPL1 (a negative regulator of seed shattering in rice) was significantly lower in rhs1 plants, and we found that CPL1 expression was correlated with S-nitrosothiol (SNO) alteration in rhs1
RHS1	Os04g0489800	LOC_Os04g41250	shattering	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 Interestingly noe1, a rice mutant with high SNO levels, exhibited low seed shattering, whereas rhs1 resulted in low SNO levels with high seed shattering
RHS1	Os04g0489800	LOC_Os04g41250	shattering	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 Therefore, RHS1 is a novel gene that negatively regulates the shattering trait in rice via regulation of endogenous SNO levels
RHS1	Os04g0489800	LOC_Os04g41250	seed shattering	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 The expression of CPL1 (a negative regulator of seed shattering in rice) was significantly lower in rhs1 plants, and we found that CPL1 expression was correlated with S-nitrosothiol (SNO) alteration in rhs1
RHS1	Os04g0489800	LOC_Os04g41250	seed shattering	A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.	 Interestingly noe1, a rice mutant with high SNO levels, exhibited low seed shattering, whereas rhs1 resulted in low SNO levels with high seed shattering
riceXIP	Os11g0701100	LOC_Os11g47520	jasmonate	Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice	The transcripts of OsXIP and riceXIP were undetectable under normal conditions, and were drastically induced by wounding and methyl jasmonate (MeJA) treatment in the root
riceXIP	Os11g0701100	LOC_Os11g47520	root	Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice	The transcripts of OsXIP and riceXIP were undetectable under normal conditions, and were drastically induced by wounding and methyl jasmonate (MeJA) treatment in the root
RIF2	Os10g0542200	LOC_Os10g39620	mitochondria	A candidate factor that interacts with RF2, a restorer of fertility of Lead rice-type cytoplasmic male sterility in rice.	A study of subcellular localization demonstrated that only RIF2 was targeted to mitochondria
RIF2	Os10g0542200	LOC_Os10g39620	fertility	A candidate factor that interacts with RF2, a restorer of fertility of Lead rice-type cytoplasmic male sterility in rice.	These results suggest that RIF2 is a candidate factor of a fertility restoration complex of RF2
RIF2	Os10g0542200	LOC_Os10g39620	Ubiquitin	A candidate factor that interacts with RF2, a restorer of fertility of Lead rice-type cytoplasmic male sterility in rice.	RIF2 encodes ubiquitin domain-containing protein
RIFLA	None	None	floral	Intronic long noncoding RNA, RICE FLOWERING ASSOCIATED (RIFLA), regulates OsMADS56-mediated flowering in rice.	 Together, these results suggest that the floral repressor activity of OsMADS56 is epigenetically regulated by RIFLA and OsiEZ1
RIFLA	None	None	flowering	Intronic long noncoding RNA, RICE FLOWERING ASSOCIATED (RIFLA), regulates OsMADS56-mediated flowering in rice.	 Overexpression of RIFLA in rice repressed OsMADS56 expression but activated the expression of flowering inducers Hd3a and RFT1
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	disease	Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus	One mutant, designated rim1-1, did not show typical disease symptoms upon infection with RDV
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	jasmonate	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	These results suggest that RIM1 may represent a new molecular link in jasmonate signaling, and may thereby provide new insights into the well-established coronatine-insensitive 1 (COI1)-Jasmonate ZIM-domain (JAZ) JA signaling pathway
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	jasmonate	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	ja	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	Here, we report that RIM1 functions as a transcriptional regulator of JA signaling and is degraded in response to JA treatment via a 26S proteasome-dependent pathway
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	ja	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	The expression profiles of the mutants were significantly correlated with those of JA-treated wild-type plants without accumulation of endogenous JA, indicating that RIM1 functions as a component of JA signaling
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	ja	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	The expression of genes encoding JA biosynthetic enzymes (lipoxygenase (LOX), allene oxide synthase 2 (AOS2) and OPDA reductase 7 (OPR7)) was up-regulated in the rim1 mutants under normal conditions, and a rapid and massive accumulation of endogenous JA was detected in the mutants after wounding
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	ja	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	These results suggest that RIM1 may represent a new molecular link in jasmonate signaling, and may thereby provide new insights into the well-established coronatine-insensitive 1 (COI1)-Jasmonate ZIM-domain (JAZ) JA signaling pathway
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	dwarf	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	We recently identified the NAC transcription factor RIM1 as a host factor involved in multiplication of rice dwarf virus (RDV)
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	root	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	Plants carrying rim1 mutations show a phenotype of root growth inhibition
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	growth	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	Plants carrying rim1 mutations show a phenotype of root growth inhibition
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf	Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus	The rim1-1 mutant remained susceptible to the two other viruses tested, one of which is also transmitted by leafhoppers, suggesting that the multiplication rather than transmission of RDV is specifically impaired in this mutant
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	transcription factor	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	We recently identified the NAC transcription factor RIM1 as a host factor involved in multiplication of rice dwarf virus (RDV)
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	transcription factor	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Here, we show that the rice (Oryza sativa) NAM/ATAF<U+00BD>/CUC2 (NAC) transcription factor ONAC054 plays an important role in ABA-induced leaf senescence
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	onac054 knockout mutants maintained green leaves, while ONAC054-overexpressing lines showed early leaf yellowing under dark- and ABA-induced senescence conditions
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	The significance of this multilayered regulation of ONAC054 for ABA-induced leaf senescence is also discussed
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf senescence	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf senescence	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Here, we show that the rice (Oryza sativa) NAM/ATAF<U+00BD>/CUC2 (NAC) transcription factor ONAC054 plays an important role in ABA-induced leaf senescence
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf senescence	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	The significance of this multilayered regulation of ONAC054 for ABA-induced leaf senescence is also discussed
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	transcription factor	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Here, we show that the rice (Oryza sativa) NAM/ATAF<U+00BD>/CUC2 (NAC) transcription factor ONAC054 plays an important role in ABA-induced leaf senescence
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	senescence	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	senescence	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Here, we show that the rice (Oryza sativa) NAM/ATAF<U+00BD>/CUC2 (NAC) transcription factor ONAC054 plays an important role in ABA-induced leaf senescence
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	senescence	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	onac054 knockout mutants maintained green leaves, while ONAC054-overexpressing lines showed early leaf yellowing under dark- and ABA-induced senescence conditions
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	senescence	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	The significance of this multilayered regulation of ONAC054 for ABA-induced leaf senescence is also discussed
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	ABA	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Genome-wide microarray analysis showed that ABA signaling-associated genes, including ABA INSENSITIVE5 (OsABI5) and senescence-associated genes, including STAY-GREEN and NON-YELLOW COLORING1 (NYC1), were significantly downregulated in onac054 mutants
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	abscisic acid	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	ABA	Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice.	Genome-wide microarray analysis showed that ABA signaling-associated genes, including ABA INSENSITIVE5 (OsABI5) and senescence-associated genes, including STAY-GREEN and NON-YELLOW COLORING1 (NYC1), were significantly downregulated in onac054 mutants
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Here, we show that the rice (Oryza sativa) NAM/ATAF1/2/CUC2 (NAC) transcription factor ONAC054 plays an important role in ABA-induced leaf senescence
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	The onac054 knockout mutants maintained green leaves, while ONAC054-overexpressing lines showed early leaf yellowing under dark- and ABA-induced senescence conditions
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf senescence	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	leaf senescence	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Here, we show that the rice (Oryza sativa) NAM/ATAF1/2/CUC2 (NAC) transcription factor ONAC054 plays an important role in ABA-induced leaf senescence
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	transcription factor	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Here, we show that the rice (Oryza sativa) NAM/ATAF1/2/CUC2 (NAC) transcription factor ONAC054 plays an important role in ABA-induced leaf senescence
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	senescence	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	senescence	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Here, we show that the rice (Oryza sativa) NAM/ATAF1/2/CUC2 (NAC) transcription factor ONAC054 plays an important role in ABA-induced leaf senescence
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	senescence	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	The onac054 knockout mutants maintained green leaves, while ONAC054-overexpressing lines showed early leaf yellowing under dark- and ABA-induced senescence conditions
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	ABA	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Genome-wide microarray analysis showed that ABA signaling-associated genes, including ABA INSENSITIVE5 (OsABI5) and senescence-associated genes, including STAY-GREEN and NON-YELLOW COLORING1 (NYC1), were significantly down-regulated in onac054 mutants
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	abscisic acid	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice
RIM1|ONAC054	Os03g0119966	LOC_Os03g02800	ABA	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced Leaf Senescence in Rice	Genome-wide microarray analysis showed that ABA signaling-associated genes, including ABA INSENSITIVE5 (OsABI5) and senescence-associated genes, including STAY-GREEN and NON-YELLOW COLORING1 (NYC1), were significantly down-regulated in onac054 mutants
Rim2	None	LOC_Os03g44070	cell wall	The rice Rim2 transcript accumulates in response to Magnaporthe grisea and its predicted protein product shares similarity with TNP2-like proteins encoded by CACTA transposons	The Rim2 transcript also accumulated in response to treatment with a cell wall elicitor derived from M
Rim2	None	LOC_Os03g44070	disease	The rice Rim2 transcript accumulates in response to Magnaporthe grisea and its predicted protein product shares similarity with TNP2-like proteins encoded by CACTA transposons	05-kb segment of the Rim2 sequence shows 82% nucleotide sequence identity with sequences flanking the A1 and C members of the rice Xa21 disease resistance gene family
Rim2	None	LOC_Os03g44070	disease resistance	The rice Rim2 transcript accumulates in response to Magnaporthe grisea and its predicted protein product shares similarity with TNP2-like proteins encoded by CACTA transposons	05-kb segment of the Rim2 sequence shows 82% nucleotide sequence identity with sequences flanking the A1 and C members of the rice Xa21 disease resistance gene family
RIP1	Os12g0132400	LOC_Os12g03822	pollen	Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development	We isolated a pollen-preferential gene, RICE IMMATURE POLLEN 1 (RIP1), from a T-DNA insertional population of japonica rice that was trapped by a promoterless beta-glucuronidase (GUS) gene
RIP1	Os12g0132400	LOC_Os12g03822	pollen	Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development	Semi-quantitative reverse transcription-PCR (RT-PCR) analyses confirmed that the RIP1 transcript was abundant at the late stages of pollen development
RIP1	Os12g0132400	LOC_Os12g03822	pollen	Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development	Microscopic analysis demonstrated that development in the rip1 pollen was delayed, starting at the early vacuolated stage
RIP1	Os12g0132400	LOC_Os12g03822	pollen	Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development	These results indicate that RIP1 is necessary for pollen maturation and germination
RIP1	Os12g0132400	LOC_Os12g03822	pollen	Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development	Therefore, RIP1 is probably a nuclear protein that may form a functional complex with other proteins and carry out essential cellular and developmental roles during the late stage of pollen formation
RIP1	Os12g0132400	LOC_Os12g03822	pollen	Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development	Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development
RIR1	Os12g0210400	LOC_Os12g10740	growth	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	RIR1 overexpression plants were more susceptible to Xoo at late growth stage, suggesting that RIR1 mRNA levels are negatively correlated with the resistance of rice against Xoo
RIR1	Os12g0210400	LOC_Os12g10740	resistance	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	Here, we found that a Tos17 insertion mutant of LRR_RLK displayed increasing temporal resistance to Xoo, whereas the LRR_RLK overexpression lines were susceptible to the pathogen early on in the infection, indicating that LRR_RLK encodes a repressor of rice resistance to Xoo infection, and it was renamed as RIR1 (Rice Immunity Repressor 1)
RIR1	Os12g0210400	LOC_Os12g10740	resistance	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	RIR1 overexpression plants were more susceptible to Xoo at late growth stage, suggesting that RIR1 mRNA levels are negatively correlated with the resistance of rice against Xoo
RIR1	Os12g0210400	LOC_Os12g10740	immunity	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice
RIR1	Os12g0210400	LOC_Os12g10740	immunity	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	Here, we found that a Tos17 insertion mutant of LRR_RLK displayed increasing temporal resistance to Xoo, whereas the LRR_RLK overexpression lines were susceptible to the pathogen early on in the infection, indicating that LRR_RLK encodes a repressor of rice resistance to Xoo infection, and it was renamed as RIR1 (Rice Immunity Repressor 1)
RIR1	Os12g0210400	LOC_Os12g10740	pathogen	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	Here, we found that a Tos17 insertion mutant of LRR_RLK displayed increasing temporal resistance to Xoo, whereas the LRR_RLK overexpression lines were susceptible to the pathogen early on in the infection, indicating that LRR_RLK encodes a repressor of rice resistance to Xoo infection, and it was renamed as RIR1 (Rice Immunity Repressor 1)
RIR1	Os12g0210400	LOC_Os12g10740	jasmonic	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	Notably, impairment of RIR1 or overexpression of NUO resulted in reactive oxygen species accumulation and enhanced expression of pathogen-resistance genes, including jasmonic acid pathway genes
RIR1	Os12g0210400	LOC_Os12g10740	jasmonic acid	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	Notably, impairment of RIR1 or overexpression of NUO resulted in reactive oxygen species accumulation and enhanced expression of pathogen-resistance genes, including jasmonic acid pathway genes
RIR1	Os12g0210400	LOC_Os12g10740	Kinase	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	Co-immunoprecipitation, bimolecular fluoresence complementation, and pull-down assays indicated that RIR1 interacted with the NADH-ubiquinone oxidoreductase (NUO) 51-kDa subunit of the mitochondrial complex I through its kinase domain
RIR1	Os12g0210400	LOC_Os12g10740	xoo	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	Here, we found that a Tos17 insertion mutant of LRR_RLK displayed increasing temporal resistance to Xoo, whereas the LRR_RLK overexpression lines were susceptible to the pathogen early on in the infection, indicating that LRR_RLK encodes a repressor of rice resistance to Xoo infection, and it was renamed as RIR1 (Rice Immunity Repressor 1)
RIR1	Os12g0210400	LOC_Os12g10740	xoo	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	RIR1 overexpression plants were more susceptible to Xoo at late growth stage, suggesting that RIR1 mRNA levels are negatively correlated with the resistance of rice against Xoo
RIR1	Os12g0210400	LOC_Os12g10740	kinase	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	Co-immunoprecipitation, bimolecular fluoresence complementation, and pull-down assays indicated that RIR1 interacted with the NADH-ubiquinone oxidoreductase (NUO) 51-kDa subunit of the mitochondrial complex I through its kinase domain
RIR1	Os12g0210400	LOC_Os12g10740	reactive oxygen species	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice	Notably, impairment of RIR1 or overexpression of NUO resulted in reactive oxygen species accumulation and enhanced expression of pathogen-resistance genes, including jasmonic acid pathway genes
Rir1b	Os10g0569400	LOC_Os10g41980	blast	Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea	Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea
Rir1b	Os10g0569400	LOC_Os10g41980	defense	Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea	Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	grain	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	These phenotypes suggest that combinatorial interactions between RISBZ1 and RPBF play an essential role during grain filling
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	grain	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	transcription factor	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	Here, we show that OsLKR/SDH is directly regulated by major transcriptional regulators of seed storage protein (SSP) genes: the basic leucine zipper (bZIP) transcription factor (TF), RISBZ1, and the DNA-binding with one finger (DOF) transcription factor, RPBF
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	transcription factor	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	This result was in contrast to the fact that a significant reduction of SSP was observed only when these transcription factors were simultaneously reduced, suggesting that RISBZ1 and RPBF regulate SSP genes and OsLKR/SDH with high and limited redundancy, respectively
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	) basic leucine Zipper factor RISBZ1 and rice prolamin box binding factor (RPBF) are transcriptional activators of rice seed storage protein (SSP) genes in vivo
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	To ascertain the functions of these trans-activators in seed development, knock-down (KD) transgenic rice plants were generated in which the accumulation of RISBZ1 and RPBF was reduced in an endosperm-specific manner by co-suppression (KD-RISBZ1 and KD-RPBF)
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	Storage lipids were accumulated at reduced levels in KD-RISBZ1 and KD-RISBZ1/KD-RPBF seeds
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	KD-RPBF and KD-RISBZ1/KD-RPBF seeds exhibited multi-layered aleurone cells
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	The functional redundancy and compensation between RISBZ1 and RPBF possibly account for weak effects on the SSP levels in single KD mutants, and help maintain various processes during seed development in rice
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	endosperm	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	This study showed that OsbZIP58, a bZIP transcription factor, is a key transcriptional regulator controlling starch synthesis in rice endosperm
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	endosperm	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	OsbZIP58 was expressed mainly in endosperm during active starch synthesis
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	endosperm	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	endosperm	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	The RPBF gene is predominantly expressed in maturing endosperm and coordinately expressed with seed storage protein genes, and is involved in the quantitative regulation of genes expressed in the endosperm in cooperation with RISBZ1
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	Here, we show that OsLKR/SDH is directly regulated by major transcriptional regulators of seed storage protein (SSP) genes: the basic leucine zipper (bZIP) transcription factor (TF), RISBZ1, and the DNA-binding with one finger (DOF) transcription factor, RPBF
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif	Five different basic leucine zipper cDNA clones, designated RISBZ1-5, have been isolated from a rice seed cDNA library
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif	RISBZ1 gene expression is restricted to the seed, where it precedes the expression of storage protein genes
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	osbzip58 null mutants displayed abnormal seed morphology with altered starch accumulation in the white belly region and decreased amounts of total starch and amylose
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	These findings indicate that OsbZIP58 functions as a key regulator of starch synthesis in rice seeds and provide new insights into seed quality control
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	grain	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	Reducing either RISBZ1 or RPBF decreased OsLKR/SDH levels, resulting in an increase in free lysine content in rice grain
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed development	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	To ascertain the functions of these trans-activators in seed development, knock-down (KD) transgenic rice plants were generated in which the accumulation of RISBZ1 and RPBF was reduced in an endosperm-specific manner by co-suppression (KD-RISBZ1 and KD-RPBF)
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed development	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	The functional redundancy and compensation between RISBZ1 and RPBF possibly account for weak effects on the SSP levels in single KD mutants, and help maintain various processes during seed development in rice
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	transcription factor	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	Overexpression of both transcription factors gave rise to much higher levels of expression than the sum of individual activities elicited by either RPBF or RISBZ1 alone
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	This study showed that OsbZIP58, a bZIP transcription factor, is a key transcriptional regulator controlling starch synthesis in rice endosperm
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	OsbZIP58 was expressed mainly in endosperm during active starch synthesis
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	osbzip58 null mutants displayed abnormal seed morphology with altered starch accumulation in the white belly region and decreased amounts of total starch and amylose
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	Furthermore, OsbZIP58 was shown to bind directly to the promoters of six starch-synthesizing genes, OsAGPL3, Wx, OsSSIIa, SBE1, OsBEIIb, and ISA2, and to regulate their expression
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	These findings indicate that OsbZIP58 functions as a key regulator of starch synthesis in rice seeds and provide new insights into seed quality control
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	endosperm	A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif	When the RISBZ1 promoter was transcriptionally fused to the beta-glucuronidase reporter gene and the chimeric gene was introduced into rice, the beta-glucuronidase gene is specifically expressed in aleurone and subaleurone layer of the developing endosperm
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	endosperm	A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif	These findings suggest that the specific expression of transcriptional activator RISBZ1 gene may determine the endosperm specificity of the storage protein genes
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	endosperm	A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif	A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	starch biosynthesis	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	transcription factor	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	This study showed that OsbZIP58, a bZIP transcription factor, is a key transcriptional regulator controlling starch synthesis in rice endosperm
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	transcription factor	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	grain filling	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	These phenotypes suggest that combinatorial interactions between RISBZ1 and RPBF play an essential role during grain filling
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	grain filling	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	endosperm	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	To ascertain the functions of these trans-activators in seed development, knock-down (KD) transgenic rice plants were generated in which the accumulation of RISBZ1 and RPBF was reduced in an endosperm-specific manner by co-suppression (KD-RISBZ1 and KD-RPBF)
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	The RPBF gene is predominantly expressed in maturing endosperm and coordinately expressed with seed storage protein genes, and is involved in the quantitative regulation of genes expressed in the endosperm in cooperation with RISBZ1
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	gibberellin biosynthesis	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed germination	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	transcription factor	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	transcription factor	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	The results of this study suggest that OsSMF1 is one of the key transcription factors that functions in a wide range of seed developmental processes with different specific binding affinities for the three DNA-binding motifs
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	grain	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	OsSMF1 (previously called RISBZ1 or OsbZIP58) is known to interact with GCN4 motifs (TGA(G/C)TCA) to regulate seed storage protein synthesis, and it functions as a key regulator of starch synthesis
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	The results of this study suggest that OsSMF1 is one of the key transcription factors that functions in a wide range of seed developmental processes with different specific binding affinities for the three DNA-binding motifs
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	starch	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	OsSMF1 (previously called RISBZ1 or OsbZIP58) is known to interact with GCN4 motifs (TGA(G/C)TCA) to regulate seed storage protein synthesis, and it functions as a key regulator of starch synthesis
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	grain filling	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed development	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	The results of this study suggest that OsSMF1 is one of the key transcription factors that functions in a wide range of seed developmental processes with different specific binding affinities for the three DNA-binding motifs
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	prolamin	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	OsSMF1 was shown to bind directly to the promoters of Os03g0168500 (GCN4 motif), patatin-like gene (GCN4 motif), α-globulin (ACGT motif), rice prolamin box-binding factor (RPBF) (ATGA motif), and ONAC024 (GCN4 and ACGT motifs) and to regulate their expression
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	transcription factor	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.	Here, we report that Opaque2 like transcription factor OsbZIP58 is a key factor regulating storage material accumulation under HT
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	temperature	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	grain	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.	Therefore, OsbZIP58 is a crucial gene in regulating storage material accumulation under HT and lower alternative splicing of OsbZIP58 may contribute to heat tolerance during grain filling
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	seed	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.	The OsbZIP58 gene promotes expression of many seed storage protein genes and starch synthesis genes while inhibits expression of some starch hydrolyzing amylase genes under HT
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	starch	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.	The OsbZIP58 gene promotes expression of many seed storage protein genes and starch synthesis genes while inhibits expression of some starch hydrolyzing amylase genes under HT
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	tolerance	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.	Therefore, OsbZIP58 is a crucial gene in regulating storage material accumulation under HT and lower alternative splicing of OsbZIP58 may contribute to heat tolerance during grain filling
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	grain filling	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.	Therefore, OsbZIP58 is a crucial gene in regulating storage material accumulation under HT and lower alternative splicing of OsbZIP58 may contribute to heat tolerance during grain filling
RISBZ1|OsbZIP58|OsSMF1	Os07g0182000	LOC_Os07g08420	heat tolerance	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.	Therefore, OsbZIP58 is a crucial gene in regulating storage material accumulation under HT and lower alternative splicing of OsbZIP58 may contribute to heat tolerance during grain filling
RIXI|C10701	Os11g0701800	LOC_Os11g47580	phytohormone	Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice	RIXI was constitutively expressed in the shoot but not induced by wounding and stress-related phytohormones
RIXI|C10701	Os11g0701800	LOC_Os11g47580	shoot	Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice	RIXI was constitutively expressed in the shoot but not induced by wounding and stress-related phytohormones
RKe	None	LOC_Os11g46980	temperature	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	Transcriptional activation of NRKe or 9RKe resulted in the formation of temperature-sensitive lesion mimics, which were spots of dead cells associated with accumulation of superoxides, in different organs of the transgenic plants
RKe	None	LOC_Os11g46980	temperature	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	CONCLUSION: These results suggest that the RKe locus is involved in rice response to raised temperature
RKe	None	LOC_Os11g46980	temperature	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	The LRR domain of RKe protein appears to be important to sense increased temperature
RKe	None	LOC_Os11g46980	temperature	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	The RKe-involved temperature-related pathway and Xa3/Xa26-mediated disease-resistance pathway may partially overlap
RKe	None	LOC_Os11g46980	disease	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	The RKe-involved temperature-related pathway and Xa3/Xa26-mediated disease-resistance pathway may partially overlap
RL1	Os08g0525500	LOC_Os08g41380	mitochondria	RADICLELESS 1 (RL1)-mediated nad4 intron 1 splicing is crucial for embryo and endosperm development in rice (Oryza sativa L.).	Gene cloning and confirmation via genetic complementation analyses showed that RL1 encodes a P-type PPR protein, which is localized to mitochondria
RL1	Os08g0525500	LOC_Os08g41380	R protein	RADICLELESS 1 (RL1)-mediated nad4 intron 1 splicing is crucial for embryo and endosperm development in rice (Oryza sativa L.).	Gene cloning and confirmation via genetic complementation analyses showed that RL1 encodes a P-type PPR protein, which is localized to mitochondria
RL14	Os10g0558900	LOC_Os10g40960	sheath	Rolling-leaf14 is a 2OG-Fe (II) oxygenase family protein that modulates rice leaf rolling by affecting secondary cell wall formation in leaves	RL14 was transcribed in sclerenchymatous cells in leaves that remained wrapped inside the sheath
RL14	Os10g0558900	LOC_Os10g40960	cellulose	Rolling-leaf14 is a 2OG-Fe (II) oxygenase family protein that modulates rice leaf rolling by affecting secondary cell wall formation in leaves	Expression of genes related to secondary cell wall formation was affected in rl14-1 mutants, and cellulose and lignin content were altered in rl14-1 leaves
RL14	Os10g0558900	LOC_Os10g40960	stomatal	Rolling-leaf14 is a 2OG-Fe (II) oxygenase family protein that modulates rice leaf rolling by affecting secondary cell wall formation in leaves	In addition, rl14 mutant plants displayed smaller stomatal complexes and decreased transpiration rates, as compared with the wild type
RL14	Os10g0558900	LOC_Os10g40960	cell wall	Rolling-leaf14 is a 2OG-Fe (II) oxygenase family protein that modulates rice leaf rolling by affecting secondary cell wall formation in leaves	Expression of genes related to secondary cell wall formation was affected in rl14-1 mutants, and cellulose and lignin content were altered in rl14-1 leaves
RL14	Os10g0558900	LOC_Os10g40960	cell wall	Rolling-leaf14 is a 2OG-Fe (II) oxygenase family protein that modulates rice leaf rolling by affecting secondary cell wall formation in leaves	These results reveal that the RL14 gene affects water transport in leaves by affecting the composition of the secondary cell wall
RL14	Os10g0558900	LOC_Os10g40960	stomata	Rolling-leaf14 is a 2OG-Fe (II) oxygenase family protein that modulates rice leaf rolling by affecting secondary cell wall formation in leaves	In addition, rl14 mutant plants displayed smaller stomatal complexes and decreased transpiration rates, as compared with the wild type
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	root	ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell fate in rice	RL9 is mainly expressed in roots, leaves, and flowers
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	crown root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	The SLL1 gene was expressed at the lateral root tip, whereas SLL1 expression was not detected in the elongation zone of the crown roots
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	crown root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	These results indicate that the lateral root specific defect in sll1 mutant is caused by the different expression patterns of SLL1 in lateral and crown roots
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	leaf	ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell fate in rice	In this study, we characterized two rice (Oryza sativa) allelic rolled-leaf mutants, rolled leaf 9-1 (rl9-1) and rl9-2, which display very similar phenotypes with completely adaxialized leaves and malformed spikelets
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	flower	ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell fate in rice	RL9 is mainly expressed in roots, leaves, and flowers
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	spikelet	ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell fate in rice	In this study, we characterized two rice (Oryza sativa) allelic rolled-leaf mutants, rolled leaf 9-1 (rl9-1) and rl9-2, which display very similar phenotypes with completely adaxialized leaves and malformed spikelets
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	leaf rolling	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development	Here, we show the isolation and functional characterization of SHALLOT-LIKE1 (SLL1), a key gene controlling rice leaf rolling
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	leaf	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development	Here, we show the isolation and functional characterization of SHALLOT-LIKE1 (SLL1), a key gene controlling rice leaf rolling
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	leaf	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development	SLL1 is transcribed in various tissues and accumulates in the abaxial epidermis throughout leaf development
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	leaf	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development	Our findings identify the role of SLL1 in the modulation of leaf abaxial cell development and in sustaining abaxial characteristics during leaf development
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	growth	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	An sll1 mutant has decreased lateral root growth due to a defect in the cell elongation
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	transcription factor	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development	SLL1 encodes a SHAQKYF class MYB family transcription factor belonging to the KANADI family
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	lateral root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	We have identified a gene, SHORT LATERAL ROOT LENGTH1 (SLL1), which is important for the elongation of lateral roots in rice
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	lateral root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	An sll1 mutant has decreased lateral root growth due to a defect in the cell elongation
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	lateral root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	The SLL1 gene was expressed at the lateral root tip, whereas SLL1 expression was not detected in the elongation zone of the crown roots
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	lateral root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	These results indicate that the lateral root specific defect in sll1 mutant is caused by the different expression patterns of SLL1 in lateral and crown roots
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	lateral root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	In addition, SLL1 over-expressers produced significantly longer lateral roots compared to the wild-type, and thus SLL1 gene would be very useful for improving rice root architecture
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	lateral root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	cell death	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development	SLL1 deficiency leads to defective programmed cell death of abaxial mesophyll cells and suppresses the development of abaxial features
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	We have identified a gene, SHORT LATERAL ROOT LENGTH1 (SLL1), which is important for the elongation of lateral roots in rice
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	An sll1 mutant has decreased lateral root growth due to a defect in the cell elongation
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	We measured the fatty acid content and found that the 18:0 content in the sll1 mutant root was approximately 4 times that in the wild-type root
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	The SLL1 gene was expressed at the lateral root tip, whereas SLL1 expression was not detected in the elongation zone of the crown roots
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	These results indicate that the lateral root specific defect in sll1 mutant is caused by the different expression patterns of SLL1 in lateral and crown roots
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	In addition, SLL1 over-expressers produced significantly longer lateral roots compared to the wild-type, and thus SLL1 gene would be very useful for improving rice root architecture
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	root	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	transcription factor	ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell fate in rice	The transient expression of a RL9-GFP (green fluorescent protein) fusion protein has indicated that RL9 protein is localized in the nucleus, suggesting that RL9 acts as a putative transcription factor
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	photosynthesis	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development	Additionally, SLL1 deficiency results in increased chlorophyll and photosynthesis
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	architecture	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	In addition, SLL1 over-expressers produced significantly longer lateral roots compared to the wild-type, and thus SLL1 gene would be very useful for improving rice root architecture
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	crown	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	The SLL1 gene was expressed at the lateral root tip, whereas SLL1 expression was not detected in the elongation zone of the crown roots
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	crown	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	These results indicate that the lateral root specific defect in sll1 mutant is caused by the different expression patterns of SLL1 in lateral and crown roots
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	cell elongation	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	An sll1 mutant has decreased lateral root growth due to a defect in the cell elongation
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	cell elongation	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	leaf development	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development	SLL1 is transcribed in various tissues and accumulates in the abaxial epidermis throughout leaf development
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	leaf development	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development	Our findings identify the role of SLL1 in the modulation of leaf abaxial cell development and in sustaining abaxial characteristics during leaf development
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	root architecture	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice	In addition, SLL1 over-expressers produced significantly longer lateral roots compared to the wild-type, and thus SLL1 gene would be very useful for improving rice root architecture
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	grain	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	grain	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	In the study, AH2 encodes a MYB domain protein, and functions in the development of hull and grain
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	grain	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Mutation of AH2 produces smaller grains and alters grain quality including decreased amylose content and gel consistency, and increased protein content
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	grain	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Our results revealed that AH2 plays an important role in the determination of hull epidermis development, palea identity, and grain size
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	development	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	In the study, AH2 encodes a MYB domain protein, and functions in the development of hull and grain
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	grain yield	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	yield	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	grain size	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Our results revealed that AH2 plays an important role in the determination of hull epidermis development, palea identity, and grain size
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	palea	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Meantime, part of the hull lost the outer silicified cells, and induces a transformation of the outer rough epidermis to inner smooth epidermis cells, and the body of the palea was reduced in the ah2 muant
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	palea	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Our results revealed that AH2 plays an important role in the determination of hull epidermis development, palea identity, and grain size
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	quality	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	quality	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Mutation of AH2 produces smaller grains and alters grain quality including decreased amylose content and gel consistency, and increased protein content
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	epidermis	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Meantime, part of the hull lost the outer silicified cells, and induces a transformation of the outer rough epidermis to inner smooth epidermis cells, and the body of the palea was reduced in the ah2 muant
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	epidermis	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Our results revealed that AH2 plays an important role in the determination of hull epidermis development, palea identity, and grain size
RL9|SLL1|AH2|OsADD1	Os09g0395300	LOC_Os09g23200	grain quality	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Mutation of AH2 produces smaller grains and alters grain quality including decreased amylose content and gel consistency, and increased protein content
RLI	Os11g0546000	LOC_Os11g34350	iron	cDNA Cloning and Expression Analysis of the Rice ( Oryza sativa L.) RNase L Inhibitor	Homologous analysis showed that rice-RLI contained the conserved motifs (two repeated P-loops, two ATP-binding boxes and an iron-sulfur binding motif)
RLI1	Os04g0665600	LOC_Os04g56990	leaf	An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice.	 The rli1 mutants showed reduced leaf inclination and the RLI1 over-expressors showed increased leaf inclination
RLI1	Os04g0665600	LOC_Os04g56990	leaf	An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice.	 RLI1 directly activates the downstream genes BRASSINOSTEROID UPREGULATED1 (BU1) and BU1-LIKE 1 COMPLEX1 (BC1) to control elongation of the lamina joint cells, therefore enhancing leaf inclination
RLI1	Os04g0665600	LOC_Os04g56990	leaf	An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice.	 Therefore, SPX and RLI1 form a module to regulate leaf inclination in response to external Pi availability in rice
RLI1	Os04g0665600	LOC_Os04g56990	brassinosteroid	An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice.	 RLI1 directly activates the downstream genes BRASSINOSTEROID UPREGULATED1 (BU1) and BU1-LIKE 1 COMPLEX1 (BC1) to control elongation of the lamina joint cells, therefore enhancing leaf inclination
RLI1	Os04g0665600	LOC_Os04g56990	Brassinosteroid	An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice.	 RLI1 directly activates the downstream genes BRASSINOSTEROID UPREGULATED1 (BU1) and BU1-LIKE 1 COMPLEX1 (BC1) to control elongation of the lamina joint cells, therefore enhancing leaf inclination
RLI1	Os04g0665600	LOC_Os04g56990	lamina	An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice.	 RLI1 directly activates the downstream genes BRASSINOSTEROID UPREGULATED1 (BU1) and BU1-LIKE 1 COMPLEX1 (BC1) to control elongation of the lamina joint cells, therefore enhancing leaf inclination
RLI1	Os04g0665600	LOC_Os04g56990	Pi	An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice.	 Therefore, SPX and RLI1 form a module to regulate leaf inclination in response to external Pi availability in rice
RLI1	Os04g0665600	LOC_Os04g56990	 pi 	An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice.	 Therefore, SPX and RLI1 form a module to regulate leaf inclination in response to external Pi availability in rice
RLI1	Os04g0665600	LOC_Os04g56990	lamina joint	An SPX-RLI1 module regulates leaf inclination in response to phosphate availability in rice.	 RLI1 directly activates the downstream genes BRASSINOSTEROID UPREGULATED1 (BU1) and BU1-LIKE 1 COMPLEX1 (BC1) to control elongation of the lamina joint cells, therefore enhancing leaf inclination
RLI1	Os04g0665600	LOC_Os04g56990	growth	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 RLI1 and PHOSPHATE STARVATION RESPONSE 2 function redundantly to regulate Pi starvation signaling and growth in response to Pi deficiency
RLI1	Os04g0665600	LOC_Os04g56990	growth	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 Together, these findings indicate that the AS of RLI1 is an important and functionally conserved strategy to orchestrate Pi starvation signaling and growth to help plants adapt to Pi-limitation stress
RLI1	Os04g0665600	LOC_Os04g56990	stress	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 Together, these findings indicate that the AS of RLI1 is an important and functionally conserved strategy to orchestrate Pi starvation signaling and growth to help plants adapt to Pi-limitation stress
RLI1	Os04g0665600	LOC_Os04g56990	phosphate	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 RLI1 and PHOSPHATE STARVATION RESPONSE 2 function redundantly to regulate Pi starvation signaling and growth in response to Pi deficiency
RLI1	Os04g0665600	LOC_Os04g56990	Pi	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 RLI1 and PHOSPHATE STARVATION RESPONSE 2 function redundantly to regulate Pi starvation signaling and growth in response to Pi deficiency
RLI1	Os04g0665600	LOC_Os04g56990	Pi	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 Together, these findings indicate that the AS of RLI1 is an important and functionally conserved strategy to orchestrate Pi starvation signaling and growth to help plants adapt to Pi-limitation stress
RLI1	Os04g0665600	LOC_Os04g56990	pi	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 RLI1 and PHOSPHATE STARVATION RESPONSE 2 function redundantly to regulate Pi starvation signaling and growth in response to Pi deficiency
RLI1	Os04g0665600	LOC_Os04g56990	pi	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 Together, these findings indicate that the AS of RLI1 is an important and functionally conserved strategy to orchestrate Pi starvation signaling and growth to help plants adapt to Pi-limitation stress
RLI1	Os04g0665600	LOC_Os04g56990	 pi 	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 RLI1 and PHOSPHATE STARVATION RESPONSE 2 function redundantly to regulate Pi starvation signaling and growth in response to Pi deficiency
RLI1	Os04g0665600	LOC_Os04g56990	 pi 	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 Together, these findings indicate that the AS of RLI1 is an important and functionally conserved strategy to orchestrate Pi starvation signaling and growth to help plants adapt to Pi-limitation stress
RLI1	Os04g0665600	LOC_Os04g56990	phosphate starvation	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 RLI1 and PHOSPHATE STARVATION RESPONSE 2 function redundantly to regulate Pi starvation signaling and growth in response to Pi deficiency
RLI1	Os04g0665600	LOC_Os04g56990	phosphate starvation response	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	 RLI1 and PHOSPHATE STARVATION RESPONSE 2 function redundantly to regulate Pi starvation signaling and growth in response to Pi deficiency
RLM1	Os05g0543600	LOC_Os05g46610	transcription factor	RLM1, Encoding an R2R3 MYB Transcription Factor, Regulates the Development of Secondary Cell Wall in Rice.	 A series of experiments, including the transcription factor-centered technology, DNA-binding assay, and electrophoretic mobility shift assay, verified that RLM1 can bind to the promoter of OsCAD2, a key gene responsible for lignin biosynthesis in rice
RLM1	Os05g0543600	LOC_Os05g46610	stems	RLM1, Encoding an R2R3 MYB Transcription Factor, Regulates the Development of Secondary Cell Wall in Rice.	 In particular, RLM1 is exclusively expressed in the stems at the mature plant stage
RLM1	Os05g0543600	LOC_Os05g46610	yield	RLM1, Encoding an R2R3 MYB Transcription Factor, Regulates the Development of Secondary Cell Wall in Rice.	 The yield of RLM1 knockdown lines increased by over 11% without other adverse agricultural trait penalties, indicating great practical application value
RLM1	Os05g0543600	LOC_Os05g46610	cell wall	RLM1, Encoding an R2R3 MYB Transcription Factor, Regulates the Development of Secondary Cell Wall in Rice.	 Cytological observations revealed that the rlm1 was mainly caused by abnormal deposition of secondary cell walls
RLM1	Os05g0543600	LOC_Os05g46610	lignin	RLM1, Encoding an R2R3 MYB Transcription Factor, Regulates the Development of Secondary Cell Wall in Rice.	 A series of experiments, including the transcription factor-centered technology, DNA-binding assay, and electrophoretic mobility shift assay, verified that RLM1 can bind to the promoter of OsCAD2, a key gene responsible for lignin biosynthesis in rice
RLM1	Os05g0543600	LOC_Os05g46610	lignin biosynthesis	RLM1, Encoding an R2R3 MYB Transcription Factor, Regulates the Development of Secondary Cell Wall in Rice.	 A series of experiments, including the transcription factor-centered technology, DNA-binding assay, and electrophoretic mobility shift assay, verified that RLM1 can bind to the promoter of OsCAD2, a key gene responsible for lignin biosynthesis in rice
RLM1	Os05g0543600	LOC_Os05g46610	secondary cell wall	RLM1, Encoding an R2R3 MYB Transcription Factor, Regulates the Development of Secondary Cell Wall in Rice.	 Cytological observations revealed that the rlm1 was mainly caused by abnormal deposition of secondary cell walls
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	cytokinin	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	Consistent with its involvement in leaf senescence, RLS1 was up-regulated during dark-induced leaf senescence and down-regulated by cytokinin
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	leaf	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	In this study, the genetic and physiological characteristics of the rice rls1 (rapid leaf senescence 1) mutant were identified
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	leaf	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	The rapid loss of chlorophyll content during senescence was the main cause of accelerated leaf senescence in rls1
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	leaf	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	Consistent with its involvement in leaf senescence, RLS1 was up-regulated during dark-induced leaf senescence and down-regulated by cytokinin
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	leaf	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	Intriguingly, constitutive expression of RLS1 also slightly accelerated leaf senescence with decreased chlorophyll content in transgenic rice plants
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	leaf	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	senescence	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	In this study, the genetic and physiological characteristics of the rice rls1 (rapid leaf senescence 1) mutant were identified
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	senescence	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	The rls1 mutant developed small, yellow-brown lesions resembling disease scattered over the whole surfaces of leaves that displayed earlier senescence than those of wild-type plants
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	senescence	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	The rapid loss of chlorophyll content during senescence was the main cause of accelerated leaf senescence in rls1
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	senescence	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	Consistent with its involvement in leaf senescence, RLS1 was up-regulated during dark-induced leaf senescence and down-regulated by cytokinin
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	senescence	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	Intriguingly, constitutive expression of RLS1 also slightly accelerated leaf senescence with decreased chlorophyll content in transgenic rice plants
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	senescence	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	disease	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	The rls1 mutant developed small, yellow-brown lesions resembling disease scattered over the whole surfaces of leaves that displayed earlier senescence than those of wild-type plants
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	chloroplast	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	Microscopic observation indicated that PCD was misregulated, probably resulting in the accelerated degradation of chloroplasts in rls1 leaves
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	chloroplast	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice	A novel protein RLS1 with NB-ARM domains is involved in chloroplast degradation during leaf senescence in rice
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	defense response	An activated form of NB-ARC protein RLS1 functions with cysteine-rich receptor-like protein RMC to trigger cell death in rice.	 A screen for suppressors of RLS1 activation identified RMC (Root Meander Curling) as essential for the RLS1-activated defense response
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	defense	An activated form of NB-ARC protein RLS1 functions with cysteine-rich receptor-like protein RMC to trigger cell death in rice.	 A screen for suppressors of RLS1 activation identified RMC (Root Meander Curling) as essential for the RLS1-activated defense response
RLS1|NOE2	Os02g0203500	LOC_Os02g10900	cell death	An activated form of NB-ARC protein RLS1 functions with cysteine-rich receptor-like protein RMC to trigger cell death in rice.	An activated form of NB-ARC protein RLS1 functions with cysteine-rich receptor-like protein RMC to trigger cell death in rice.
RLS2|OsEXO70A1	Os04g0685600	LOC_Os04g58880	vascular bundle	Disruption of OsEXO70A1 Causes Irregular Vascular Bundles and Perturbs Mineral Nutrient Assimilation in Rice.	RLS2 was widely expressed and spatially restricted in vascular bundles
RLS2|OsEXO70A1	Os04g0685600	LOC_Os04g58880	vascular bundle	Disruption of OsEXO70A1 Causes Irregular Vascular Bundles and Perturbs Mineral Nutrient Assimilation in Rice.	In brief, our study revealed that RLS2 is required for normal vascular bundle differentiation and primary nutrient assimilation
RLS2|OsEXO70A1	Os04g0685600	LOC_Os04g58880	map-based cloning	Disruption of OsEXO70A1 Causes Irregular Vascular Bundles and Perturbs Mineral Nutrient Assimilation in Rice.	Map-based cloning has revealed that RLS2 encodes OsEXO70A1, which is one of the 47 members of EXO70s in rice
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Disruption of OsPLS2 accelerated light-dependent leaf senescence in the rice mutant of ospls2
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	This mutation prompts aberrant splicing of OsPLS2 messenger and consequent disruption of its full-length protein translation, suggesting a negative role of OsPLS2 in regulating leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	When continuously exposed to far-red light, exogenous H2O2 and/or abscisic acid (ABA), the ospls2 mutant sustained hypersensitive leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	In consistence, light and ROS signal pathways in ospls2 were activated by down-regulation of phytochrome genes, and up-regulation of PHYTOCHROME-INTERACTING FACTORS (PIFs) and WRKY genes, all promoting leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Together, these data indicated that OsPLS2 played an essential role in leaf senescence and its disruption triggered light-dependent leaf senescence in rice
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Disruption of OsPLS2 accelerated light-dependent leaf senescence in the rice mutant of ospls2
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	This mutation prompts aberrant splicing of OsPLS2 messenger and consequent disruption of its full-length protein translation, suggesting a negative role of OsPLS2 in regulating leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	When continuously exposed to far-red light, exogenous H2O2 and/or abscisic acid (ABA), the ospls2 mutant sustained hypersensitive leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	In consistence, light and ROS signal pathways in ospls2 were activated by down-regulation of phytochrome genes, and up-regulation of PHYTOCHROME-INTERACTING FACTORS (PIFs) and WRKY genes, all promoting leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	leaf senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Together, these data indicated that OsPLS2 played an essential role in leaf senescence and its disruption triggered light-dependent leaf senescence in rice
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Disruption of OsPLS2 accelerated light-dependent leaf senescence in the rice mutant of ospls2
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	This mutation prompts aberrant splicing of OsPLS2 messenger and consequent disruption of its full-length protein translation, suggesting a negative role of OsPLS2 in regulating leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	When continuously exposed to far-red light, exogenous H2O2 and/or abscisic acid (ABA), the ospls2 mutant sustained hypersensitive leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	In consistence, light and ROS signal pathways in ospls2 were activated by down-regulation of phytochrome genes, and up-regulation of PHYTOCHROME-INTERACTING FACTORS (PIFs) and WRKY genes, all promoting leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	senescence	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Together, these data indicated that OsPLS2 played an essential role in leaf senescence and its disruption triggered light-dependent leaf senescence in rice
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	oxidative stress	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Shading and light filtration studies showed that the ospls2 phenotype, which was characteristic of photo-oxidative stress and reactive oxygen species (ROS) accumulation, was an effect of irritation by light
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	map-based cloning	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	The OsPLS2 locus was isolated and cloned by map-based cloning that encodes a Upf1-like helicase
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	map-based cloning	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Through map-based cloning, a G-to-A substitution was determined at the 1st nucleotide of the 13th intron in the OsPLS2 gene that encodes a Upf1-like helicase
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	stress	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Shading and light filtration studies showed that the ospls2 phenotype, which was characteristic of photo-oxidative stress and reactive oxygen species (ROS) accumulation, was an effect of irritation by light
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	abscisic acid	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	When continuously exposed to far-red light, exogenous H2O2 and/or abscisic acid (ABA), the ospls2 mutant sustained hypersensitive leaf senescence
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	reactive oxygen species	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Shading and light filtration studies showed that the ospls2 phenotype, which was characteristic of photo-oxidative stress and reactive oxygen species (ROS) accumulation, was an effect of irritation by light
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	helicase	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	The OsPLS2 locus was isolated and cloned by map-based cloning that encodes a Upf1-like helicase
RLS3|OsPLS2	Os03g0586900	LOC_Os03g38990	helicase	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Through map-based cloning, a G-to-A substitution was determined at the 1st nucleotide of the 13th intron in the OsPLS2 gene that encodes a Upf1-like helicase
rml1|RML1	Os04g0486400	LOC_Os04g40930	transcription factor	Transcript abundance of rml1, encoding a putative GT1-like factor in rice, is up-regulated by Magnaporthe grisea and down-regulated by light	The putative RML1 protein, encoded by this single copy gene, is thus identified as a new member of the plant-specific GT family of transcription factors in rice
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	anther	RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility.	RMS2 was map-based cloned as an endoplasmic reticulum-localized GDSL lipase gene, which is predominantly transcribed during early anther development
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	development	RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility.	RMS2 was map-based cloned as an endoplasmic reticulum-localized GDSL lipase gene, which is predominantly transcribed during early anther development
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	homeostasis	RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility.	RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility.
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	fertility	RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility.	Furthermore, RMS2 is directly targeted by male fertility regulators Undeveloped Tapetum 1 (UDT1) and Persistent Tapetal Cell 1 (PTC1) both in vitro and in vivo, suggesting that RMS2 may serve as a key node in the rice male fertility regulatory network
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	tapetum	RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility.	Furthermore, RMS2 is directly targeted by male fertility regulators Undeveloped Tapetum 1 (UDT1) and Persistent Tapetal Cell 1 (PTC1) both in vitro and in vivo, suggesting that RMS2 may serve as a key node in the rice male fertility regulatory network
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	tapetal	RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility.	Furthermore, RMS2 is directly targeted by male fertility regulators Undeveloped Tapetum 1 (UDT1) and Persistent Tapetal Cell 1 (PTC1) both in vitro and in vivo, suggesting that RMS2 may serve as a key node in the rice male fertility regulatory network
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	anther development	RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility.	RMS2 was map-based cloned as an endoplasmic reticulum-localized GDSL lipase gene, which is predominantly transcribed during early anther development
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	node	RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility.	Furthermore, RMS2 is directly targeted by male fertility regulators Undeveloped Tapetum 1 (UDT1) and Persistent Tapetal Cell 1 (PTC1) both in vitro and in vivo, suggesting that RMS2 may serve as a key node in the rice male fertility regulatory network
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	pollen	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	pollen	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP34 encodes an endoplasmic reticulum protein and was mainly expressed in anthers during pollen exine formation
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	pollen	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	osgelp34 mutant displayed abnormal exine and altered expression of a number of key genes required for pollen development
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	pollen	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	These results suggested that OsGELP34 and OsGELP110/OsGELP115 catalyze different compounds for pollen exine development
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	anther	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP34 is distant from OsGELP110 and OsGELP115 in sequence, and osgelp34 and osgelp110/osgelp115 mutants were different in anther morphology despite both were male sterile
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	development	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	osgelp34 mutant displayed abnormal exine and altered expression of a number of key genes required for pollen development
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	development	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	These results suggested that OsGELP34 and OsGELP110/OsGELP115 catalyze different compounds for pollen exine development
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	sterile	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP34 was identified by cloning of a male sterile mutant gene
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	sterile	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP34 is distant from OsGELP110 and OsGELP115 in sequence, and osgelp34 and osgelp110/osgelp115 mutants were different in anther morphology despite both were male sterile
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	pollen development	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	pollen development	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	osgelp34 mutant displayed abnormal exine and altered expression of a number of key genes required for pollen development
RMS2|OsGELP34	Os02g0290900	LOC_Os02g18870	pollen exine formation	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	OsGELP34 encodes an endoplasmic reticulum protein and was mainly expressed in anthers during pollen exine formation
RMtATP6	Os03g0606200	LOC_Os03g40920	salt	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)	Analysis of RMtATP6 mRNA levels suggested that the expression of this gene was induced by stress from sodium carbonates and other sodium salts
RMtATP6	Os03g0606200	LOC_Os03g40920	salt	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)	Transgenic tobacco overexpressing the RMtATP6 gene had greater tolerance to salt stress at the seedling stage than untransformed tobacco
RMtATP6	Os03g0606200	LOC_Os03g40920	salt	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)	These data suggest that the RMtATP6 protein acts as a subunit of ATP synthase, and is expressed in response to stress from several salts, with the other genes coding for the subunits of the same ATP-synthase
RMtATP6	Os03g0606200	LOC_Os03g40920	salt	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)
RMtATP6	Os03g0606200	LOC_Os03g40920	mitochondria	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)	A cDNA clone isolated from this library was identified by a homology search as a mitochondrial ATP synthase 6 kDa subunit gene (RMtATP6; GenBank accession nos AB055076, BAB21526)
RMtATP6	Os03g0606200	LOC_Os03g40920	mitochondria	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)	In transformed yeast and tobacco protoplasts, the RMtATP6 protein was localized in mitochondria using the green fluorescent protein (GFP) marker
RMtATP6	Os03g0606200	LOC_Os03g40920	mitochondria	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)
RMtATP6	Os03g0606200	LOC_Os03g40920	salt stress	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)	Transgenic tobacco overexpressing the RMtATP6 gene had greater tolerance to salt stress at the seedling stage than untransformed tobacco
RMtATP6	Os03g0606200	LOC_Os03g40920	seedling	Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.)	Transgenic tobacco overexpressing the RMtATP6 gene had greater tolerance to salt stress at the seedling stage than untransformed tobacco
RNP29	Os07g0631900	LOC_Os07g43810	phosphate	Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).	OspCKII activity shows the characteristic features of casein kinase II, such as the utilization of GTP as phosphate donor, inhibition by low concentrations of heparin and poly-lysine, and utilization of the canonical pCKII motif E-S-E-G-E in the model substrate RNP29
RNP29	Os07g0631900	LOC_Os07g43810	Kinase	Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).	OspCKII activity shows the characteristic features of casein kinase II, such as the utilization of GTP as phosphate donor, inhibition by low concentrations of heparin and poly-lysine, and utilization of the canonical pCKII motif E-S-E-G-E in the model substrate RNP29
RNRL1|V3	Os06g0168600	LOC_Os06g07210	growth	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	The virescent3 (v3) and stripe1 (st1) mutants in rice (Oryza sativa) produce chlorotic leaves in a growth stage-dependent manner under field conditions
RNRL1|V3	Os06g0168600	LOC_Os06g07210	growth	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	Moreover, wild-type plants exposed to a low concentration of an RNR inhibitor, hydroxyurea, produce chlorotic leaves without growth retardation, reminiscent of v3 and st1 mutants
RNRL1|V3	Os06g0168600	LOC_Os06g07210	photosynthesis	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	RNRL1 and RNRS1 are highly expressed in the shoot base and in young leaves, and the expression of the genes that function in plastid transcription/translation and in photosynthesis is altered in v3 and st1 mutants, indicating that a threshold activity of RNR is required for chloroplast biogenesis in developing leaves
RNRL1|V3	Os06g0168600	LOC_Os06g07210	shoot	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	RNRL1 and RNRS1 are highly expressed in the shoot base and in young leaves, and the expression of the genes that function in plastid transcription/translation and in photosynthesis is altered in v3 and st1 mutants, indicating that a threshold activity of RNR is required for chloroplast biogenesis in developing leaves
RNRL1|V3	Os06g0168600	LOC_Os06g07210	chloroplast	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	RNRL1 and RNRS1 are highly expressed in the shoot base and in young leaves, and the expression of the genes that function in plastid transcription/translation and in photosynthesis is altered in v3 and st1 mutants, indicating that a threshold activity of RNR is required for chloroplast biogenesis in developing leaves
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	shoot	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	RNRL1 and RNRS1 are highly expressed in the shoot base and in young leaves, and the expression of the genes that function in plastid transcription/translation and in photosynthesis is altered in v3 and st1 mutants, indicating that a threshold activity of RNR is required for chloroplast biogenesis in developing leaves
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	chloroplast	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	RNRL1 and RNRS1 are highly expressed in the shoot base and in young leaves, and the expression of the genes that function in plastid transcription/translation and in photosynthesis is altered in v3 and st1 mutants, indicating that a threshold activity of RNR is required for chloroplast biogenesis in developing leaves
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	growth	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	The virescent3 (v3) and stripe1 (st1) mutants in rice (Oryza sativa) produce chlorotic leaves in a growth stage-dependent manner under field conditions
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	growth	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	Moreover, wild-type plants exposed to a low concentration of an RNR inhibitor, hydroxyurea, produce chlorotic leaves without growth retardation, reminiscent of v3 and st1 mutants
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	photosynthesis	Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development	RNRL1 and RNRS1 are highly expressed in the shoot base and in young leaves, and the expression of the genes that function in plastid transcription/translation and in photosynthesis is altered in v3 and st1 mutants, indicating that a threshold activity of RNR is required for chloroplast biogenesis in developing leaves
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	leaf	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 There were fewer chloroplasts and grana lamellas in sdl leaf compared with those of wild-type
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	leaf	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 Additionally, the stripe leaf of sdl seedlings was highly sensitive to temperature, since the chlorophyll content was increased with the temperature rising
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	leaf	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 The drooping leaf of sdl might be resulted from the disappearance of vascular bundles and mesophyll cells in both leaf midrib and lateral veins
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	seedlings	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 Additionally, the stripe leaf of sdl seedlings was highly sensitive to temperature, since the chlorophyll content was increased with the temperature rising
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	vascular bundle	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 The drooping leaf of sdl might be resulted from the disappearance of vascular bundles and mesophyll cells in both leaf midrib and lateral veins
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	temperature	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 Additionally, the stripe leaf of sdl seedlings was highly sensitive to temperature, since the chlorophyll content was increased with the temperature rising
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	development	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 The mutant sdl exhibited development defects including stripe and drooping leaf, dwarfism and deformed floral organs
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	map-based cloning	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 The gene SDL was found allelic to RNRS1 by map-based cloning, which was homologous to Arabidopsis TSO2 encoding the small subunit of ribonucleotide reductase
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	photosynthesis	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 Fittingly to the phenotypes of mutant sdl, the expression levels of genes associated with photosynthesis and chlorophyll synthesis were found to be down- or up-regulated at different temperatures in mutant sdl
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	floral	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 The mutant sdl exhibited development defects including stripe and drooping leaf, dwarfism and deformed floral organs
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	floral	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 Also, the transcriptional levels of genes related to plant height and floral organ formation showed obvious differences between wild-type and sdl
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	floral organ	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 The mutant sdl exhibited development defects including stripe and drooping leaf, dwarfism and deformed floral organs
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	floral organ	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 Also, the transcriptional levels of genes related to plant height and floral organ formation showed obvious differences between wild-type and sdl
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	height	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 Also, the transcriptional levels of genes related to plant height and floral organ formation showed obvious differences between wild-type and sdl
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	plant height	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 Also, the transcriptional levels of genes related to plant height and floral organ formation showed obvious differences between wild-type and sdl
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	iron	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	 The redundant sequence was conserved in SDL homologous proteins, which contained the active site (tyrosine), as well as two amino acids glutamate and histidine involved in the binding of iron
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	leaf	Narrow and Stripe Leaf 2 Regulates Leaf Width by Modulating Cell Cycle Progression in Rice.	 CONCLUSIONS: Our findings here suggest that NSL2 function in the synthesis of dNTP, the deficient of which leads to DNA synthesis block and in turn affects cell cycle progression, and ultimately decreased cell number and narrow leaf in the nsl2 plant
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	nucleus	Narrow and Stripe Leaf 2 Regulates Leaf Width by Modulating Cell Cycle Progression in Rice.	 The NSL2 was expressed in variety of tissues, with the highest levels detected in leaves, and its protein was localized in the nucleus and cytoplasm
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	cytoplasm	Narrow and Stripe Leaf 2 Regulates Leaf Width by Modulating Cell Cycle Progression in Rice.	 The NSL2 was expressed in variety of tissues, with the highest levels detected in leaves, and its protein was localized in the nucleus and cytoplasm
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	cell cycle	Narrow and Stripe Leaf 2 Regulates Leaf Width by Modulating Cell Cycle Progression in Rice.	 In addition, flow cytometric analysis and the altered transcript level of genes related to cell cycle indicated that NSL2 affects cell cycle progression
RNRS1|St1|SDL|NSL2	Os06g0257450	LOC_Os06g14620	cell cycle	Narrow and Stripe Leaf 2 Regulates Leaf Width by Modulating Cell Cycle Progression in Rice.	 CONCLUSIONS: Our findings here suggest that NSL2 function in the synthesis of dNTP, the deficient of which leads to DNA synthesis block and in turn affects cell cycle progression, and ultimately decreased cell number and narrow leaf in the nsl2 plant
Roc1	Os08g0187500	LOC_Os08g08820	epidermis	Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis	These observations suggest that Roc1, like other GL2-type homeobox genes, plays an important role(s) in epidermis development.
ROC4	Os04g0569100	LOC_Os04g48070	flowering time	GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7	GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7
ROC4	Os04g0569100	LOC_Os04g48070	flowering time	GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7	This confirmed that Roc4 regulates flowering time mainly through Ghd7
ROC4	Os04g0569100	LOC_Os04g48070	homeobox gene	GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7	GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf rolling	Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice	Interestingly, overexpression of Roc5 led to adaxially rolled leaves, whereas cosuppression of Roc5 resulted in abaxial leaf rolling
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf rolling	Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice	Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf	Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice	To understand the molecular mechanism controlling leaf rolling, we screened a rice T-DNA insertion population and isolated the outcurved leaf1 (oul1) mutant showing abaxial leaf rolling
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf rolling	Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice	To understand the molecular mechanism controlling leaf rolling, we screened a rice T-DNA insertion population and isolated the outcurved leaf1 (oul1) mutant showing abaxial leaf rolling
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf	Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice	Interestingly, overexpression of Roc5 led to adaxially rolled leaves, whereas cosuppression of Roc5 resulted in abaxial leaf rolling
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf	Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice	Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice	Many genes, including homeodomain leucine zipper IV transcription factors ROC5 and ROC8, regulating rice leaf rolling have been cloned and functionally analysed
Roc5|oul1	Os02g0674800	LOC_Os02g45250	transcription factor	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice	Many genes, including homeodomain leucine zipper IV transcription factors ROC5 and ROC8, regulating rice leaf rolling have been cloned and functionally analysed
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf rolling	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice
Roc5|oul1	Os02g0674800	LOC_Os02g45250	leaf rolling	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice	Many genes, including homeodomain leucine zipper IV transcription factors ROC5 and ROC8, regulating rice leaf rolling have been cloned and functionally analysed
Roc8	Os06g0207966|Os06g0208100	LOC_Os06g10600	lignin	HD-ZIP IV gene Roc8 regulates the size of bulliform cells and lignin content in rice	HD-ZIP IV gene Roc8 regulates the size of bulliform cells and lignin content in rice
Roc8	Os06g0207966|Os06g0208100	LOC_Os06g10600	lignin	HD-ZIP IV gene Roc8 regulates the size of bulliform cells and lignin content in rice	Unexpectedly, Roc8 was also observed to positively mediate lignin biosynthesis without incurring a production penalty
Roc8	Os06g0207966|Os06g0208100	LOC_Os06g10600	lignin	HD-ZIP IV gene Roc8 regulates the size of bulliform cells and lignin content in rice	The above results show that Roc8 may have a practical application in cultivating materials with high photosynthetic efficiency and low lignin content
Roc8	Os06g0207966|Os06g0208100	LOC_Os06g10600	lignin biosynthesis	HD-ZIP IV gene Roc8 regulates the size of bulliform cells and lignin content in rice	Unexpectedly, Roc8 was also observed to positively mediate lignin biosynthesis without incurring a production penalty
Roc8	Os06g0207966|Os06g0208100	LOC_Os06g10600	leaf	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice
Roc8	Os06g0207966|Os06g0208100	LOC_Os06g10600	leaf rolling	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice
ROD1	Os06g0128800	LOC_Os06g03810	resistance	Ca(2+) sensor-mediated ROS scavenging suppresses rice immunity and is exploited by a fungal effector.	ROD1 disruption confers resistance to multiple pathogens, whereas a natural ROD1 allele prevalent in indica rice with agroecology-specific distribution enhances resistance without yield penalty
ROD1	Os06g0128800	LOC_Os06g03810	yield	Ca(2+) sensor-mediated ROS scavenging suppresses rice immunity and is exploited by a fungal effector.	ROD1 disruption confers resistance to multiple pathogens, whereas a natural ROD1 allele prevalent in indica rice with agroecology-specific distribution enhances resistance without yield penalty
ROD1	Os06g0128800	LOC_Os06g03810	immunity	Ca(2+) sensor-mediated ROS scavenging suppresses rice immunity and is exploited by a fungal effector.	The fungal effector AvrPiz-t structurally mimics ROD1 and activates the same ROS-scavenging cascade to suppress host immunity and promote virulence
ROD1	Os06g0128800	LOC_Os06g03810	reactive oxygen species	Ca(2+) sensor-mediated ROS scavenging suppresses rice immunity and is exploited by a fungal effector.	ROD1 promotes reactive oxygen species (ROS) scavenging by stimulating catalase activity, and its protein stability is regulated by ubiquitination
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	meristem	A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny	These T(0) plants exhibited no overt morphological phenotypes during the vegetative phase, and GUS staining showed ROS1a expression in pollen, unfertilized ovules and meristematic cells
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	vegetative	A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny	These T(0) plants exhibited no overt morphological phenotypes during the vegetative phase, and GUS staining showed ROS1a expression in pollen, unfertilized ovules and meristematic cells
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	dormancy	A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny	Even in the presence of the wild-type paternal ROS1a allele, the maternal ros1a-GUS1 allele caused failure of early-stage endosperm development, resulting in incomplete embryo development, with embryogenesis producing irregular but viable embryos that failed to complete seed dormancy, implying non-equivalent maternal and paternal contribution of ROS1a in endosperm development
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	seed	A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny	Even in the presence of the wild-type paternal ROS1a allele, the maternal ros1a-GUS1 allele caused failure of early-stage endosperm development, resulting in incomplete embryo development, with embryogenesis producing irregular but viable embryos that failed to complete seed dormancy, implying non-equivalent maternal and paternal contribution of ROS1a in endosperm development
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	pollen	A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny	These T(0) plants exhibited no overt morphological phenotypes during the vegetative phase, and GUS staining showed ROS1a expression in pollen, unfertilized ovules and meristematic cells
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	endosperm	A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny	Even in the presence of the wild-type paternal ROS1a allele, the maternal ros1a-GUS1 allele caused failure of early-stage endosperm development, resulting in incomplete embryo development, with embryogenesis producing irregular but viable embryos that failed to complete seed dormancy, implying non-equivalent maternal and paternal contribution of ROS1a in endosperm development
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	vegetative	DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm.	DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm.
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	vegetative	DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm.	 Here, we report genome-wide analyses of DNA methylation in wild-type and ros1a mutant sperm and vegetative cells
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	vegetative	DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm.	 We find that the rice vegetative cell genome is locally hypomethylated compared with sperm by a process that requires ROS1a activity
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	vegetative	DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm.	 We show that many ROS1a target sequences in the vegetative cell are hypomethylated in the rice central cell, suggesting that ROS1a also demethylates the central cell genome
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	development	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 Similarly, the expression of genes involved in pollen and anther development was decreased in osros1a mutants as compared to WT
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	pollen	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 The osros1a mutants had shrink spikelets, smaller anthers and pollen grains, and were not stained by iodine staining showing a significant reduction in total soluble sugar and starch contents as compared to wildtype (WT), which caused complete male sterility
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	pollen	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 Similarly, the expression of genes involved in pollen and anther development was decreased in osros1a mutants as compared to WT
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	anther	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 Similarly, the expression of genes involved in pollen and anther development was decreased in osros1a mutants as compared to WT
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	sterility	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	sterility	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 The osros1a mutants had shrink spikelets, smaller anthers and pollen grains, and were not stained by iodine staining showing a significant reduction in total soluble sugar and starch contents as compared to wildtype (WT), which caused complete male sterility
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	sterility	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 Combined with previous studies, our findings suggested that the RRMF domain in OsROS1a is the functional domain and loss of RRMF for OsROS1a causes sterility in rice
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	starch	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 The osros1a mutants had shrink spikelets, smaller anthers and pollen grains, and were not stained by iodine staining showing a significant reduction in total soluble sugar and starch contents as compared to wildtype (WT), which caused complete male sterility
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	sugar	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 The osros1a mutants had shrink spikelets, smaller anthers and pollen grains, and were not stained by iodine staining showing a significant reduction in total soluble sugar and starch contents as compared to wildtype (WT), which caused complete male sterility
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	anther development	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 Similarly, the expression of genes involved in pollen and anther development was decreased in osros1a mutants as compared to WT
ROS1a|OsROS1a	Os01g0217900	LOC_Os01g11900	male sterility	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (Oryza sativa L.).	 The osros1a mutants had shrink spikelets, smaller anthers and pollen grains, and were not stained by iodine staining showing a significant reduction in total soluble sugar and starch contents as compared to wildtype (WT), which caused complete male sterility
RPA1c	Os05g0111000	LOC_Os05g02040	meiotic	Replication protein A2c coupled with replication protein A1c regulates crossover formation during meiosis in rice	Our results demonstrate that an RPA complex comprising RPA2c and RPA1c is required to promote meiotic crossovers in rice
RPA2c	Os06g0693300	LOC_Os06g47830	meiosis	Replication protein A2c coupled with replication protein A1c regulates crossover formation during meiosis in rice	In this study, we identified RPA2c, a rice gene preferentially expressed during meiosis
RPA2c	Os06g0693300	LOC_Os06g47830	meiotic	Replication protein A2c coupled with replication protein A1c regulates crossover formation during meiosis in rice	RPA2c colocalized with the meiotic cohesion subunit REC8 and the axis-associated protein PAIR2
RPA2c	Os06g0693300	LOC_Os06g47830	meiotic	Replication protein A2c coupled with replication protein A1c regulates crossover formation during meiosis in rice	Our results demonstrate that an RPA complex comprising RPA2c and RPA1c is required to promote meiotic crossovers in rice
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain filling	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	These phenotypes suggest that combinatorial interactions between RISBZ1 and RPBF play an essential role during grain filling
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain filling	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	The Dof (DNA binding with one finger) transcriptional activator rice (Oryza sativa) prolamin box binding factor (RPBF), which is involved in gene regulation of rice seed storage proteins, has been isolated from rice cDNA expressed sequence tag clones containing the conserved Dof
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	We demonstrated by transient expression in rice callus protoplasts that the isolated RPBF trans-activated several storage protein genes via an AAAG target sequence located within their promoters, and with methylation interference experiments the additional AAAG-like sequences in promoters of genes expressed in maturing seeds were recognized by the RPBF protein
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	The RPBF gene is predominantly expressed in maturing endosperm and coordinately expressed with seed storage protein genes, and is involved in the quantitative regulation of genes expressed in the endosperm in cooperation with RISBZ1
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	transcription factor	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	Overexpression of both transcription factors gave rise to much higher levels of expression than the sum of individual activities elicited by either RPBF or RISBZ1 alone
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	ga	Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone	The results showed the accessory function of OsDOF3 responsible for a dosage-dependent mediation of GA signaling that leads to high-level expression of physiological target genes
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	) basic leucine Zipper factor RISBZ1 and rice prolamin box binding factor (RPBF) are transcriptional activators of rice seed storage protein (SSP) genes in vivo
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	To ascertain the functions of these trans-activators in seed development, knock-down (KD) transgenic rice plants were generated in which the accumulation of RISBZ1 and RPBF was reduced in an endosperm-specific manner by co-suppression (KD-RISBZ1 and KD-RPBF)
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	Storage lipids were accumulated at reduced levels in KD-RISBZ1 and KD-RISBZ1/KD-RPBF seeds
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	KD-RPBF and KD-RISBZ1/KD-RPBF seeds exhibited multi-layered aleurone cells
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	The functional redundancy and compensation between RISBZ1 and RPBF possibly account for weak effects on the SSP levels in single KD mutants, and help maintain various processes during seed development in rice
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	endosperm	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	To ascertain the functions of these trans-activators in seed development, knock-down (KD) transgenic rice plants were generated in which the accumulation of RISBZ1 and RPBF was reduced in an endosperm-specific manner by co-suppression (KD-RISBZ1 and KD-RPBF)
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain filling	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Through genome-wide expression profiling and chromatin immunoprecipitation, we found that SERF1 directly regulates RICE PROLAMIN-BOX BINDING FACTOR (RPBF), a TF that functions as a positive regulator of grain filling
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain filling	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Our study reveals that SERF1 represents a negative regulator of grain filling and seedling establishment by timing the expression of RPBF
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	Here, we show that OsLKR/SDH is directly regulated by major transcriptional regulators of seed storage protein (SSP) genes: the basic leucine zipper (bZIP) transcription factor (TF), RISBZ1, and the DNA-binding with one finger (DOF) transcription factor, RPBF
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Through genome-wide expression profiling and chromatin immunoprecipitation, we found that SERF1 directly regulates RICE PROLAMIN-BOX BINDING FACTOR (RPBF), a TF that functions as a positive regulator of grain filling
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Loss of SERF1 enhances RPBF expression resulting in larger grains with increased starch content, while SERF1 overexpression represses RPBF resulting in smaller grains
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Our study reveals that SERF1 represents a negative regulator of grain filling and seedling establishment by timing the expression of RPBF
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	These phenotypes suggest that combinatorial interactions between RISBZ1 and RPBF play an essential role during grain filling
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seedling	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Our study reveals that SERF1 represents a negative regulator of grain filling and seedling establishment by timing the expression of RPBF
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed development	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	To ascertain the functions of these trans-activators in seed development, knock-down (KD) transgenic rice plants were generated in which the accumulation of RISBZ1 and RPBF was reduced in an endosperm-specific manner by co-suppression (KD-RISBZ1 and KD-RPBF)
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	seed development	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice	The functional redundancy and compensation between RISBZ1 and RPBF possibly account for weak effects on the SSP levels in single KD mutants, and help maintain various processes during seed development in rice
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	transcription factor	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	Here, we show that OsLKR/SDH is directly regulated by major transcriptional regulators of seed storage protein (SSP) genes: the basic leucine zipper (bZIP) transcription factor (TF), RISBZ1, and the DNA-binding with one finger (DOF) transcription factor, RPBF
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	transcription factor	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	This result was in contrast to the fact that a significant reduction of SSP was observed only when these transcription factors were simultaneously reduced, suggesting that RISBZ1 and RPBF regulate SSP genes and OsLKR/SDH with high and limited redundancy, respectively
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	endosperm	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes	The RPBF gene is predominantly expressed in maturing endosperm and coordinately expressed with seed storage protein genes, and is involved in the quantitative regulation of genes expressed in the endosperm in cooperation with RISBZ1
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	starch	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Loss of SERF1 enhances RPBF expression resulting in larger grains with increased starch content, while SERF1 overexpression represses RPBF resulting in smaller grains
RPBF|OsDof3	Os02g0252400	LOC_Os02g15350	grain	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain	Reducing either RISBZ1 or RPBF decreased OsLKR/SDH levels, resulting in an increase in free lysine content in rice grain
RPE	Os03g0169100	LOC_Os03g07300	dwarf	RPE, a plant gene involved in early developmental steps of nematode feeding cells	Homozygous rpe plants have a germination mutant phenotype that can be rescued in dwarf plants on sucrose-supplemented medium
RPL1	Os06g0245600	LOC_Os06g13640	brassinosteroid	RPL1, a gene involved in epigenetic processes regulates phenotypic plasticity in rice	Analysis of the putative rice brassinosteroid receptor OsBRI1, a key hormone signaling gene, indicated that RPL1 may be involved in the regulation of epigenomic modification of the gene
RPL1	Os06g0245600	LOC_Os06g13640	phytohormone	RPL1, a gene involved in epigenetic processes regulates phenotypic plasticity in rice	These data suggest that RPL1 regulated phenotypic plasticity likely through its involvement in epigenetic processes affecting responses of the plant to phytohormones
RPP10|OsACBP1	Os08g0162800	LOC_Os08g06550	phloem	A putative acyl-CoA-binding protein is a major phloem sap protein in rice (Oryza sativa L.)	Considering that the content of thioredoxin h, the major phloem sap protein, was 9.4 lg ml 1 in phloem sap (Fukuda et al., 2005), this result suggested that RPP10 was also one of the major proteins in rice phloem sap.
Rpp16|OsPBP1	Os04g0531100	LOC_Os04g44870	pollen	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice	OsPBP1 is a single copy gene and preferentially expressed in pistil and pollen but down-regulated by pollination
Rpp16|OsPBP1	Os04g0531100	LOC_Os04g44870	pollen	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice	Pollen grains of antisense OsPBP1 transgenic lines were largely nonviable, germinated poorly in vitro and of low fertility
Rpp16|OsPBP1	Os04g0531100	LOC_Os04g44870	pollen	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice	OsPBP1 protein was localized in a region peripheral to pollen wall and vesicles of elongating pollen tube, and its repressed expression reduced substantially this association and led to alteration of microfilament polymerization during pollen germination
Rpp16|OsPBP1	Os04g0531100	LOC_Os04g44870	pollen	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice	Taken together, these results indicate that OsPBP1 is a novel functional C2-domain phospholipids-binding protein that is required for pollen fertility likely by regulating Ca(2+) and phospholipid signaling pathways
Rpp16|OsPBP1	Os04g0531100	LOC_Os04g44870	pollen	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice
Rpp16|OsPBP1	Os04g0531100	LOC_Os04g44870	grain	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice	Pollen grains of antisense OsPBP1 transgenic lines were largely nonviable, germinated poorly in vitro and of low fertility
Rpp16|OsPBP1	Os04g0531100	LOC_Os04g44870	fertility	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice	Pollen grains of antisense OsPBP1 transgenic lines were largely nonviable, germinated poorly in vitro and of low fertility
Rpp16|OsPBP1	Os04g0531100	LOC_Os04g44870	fertility	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice	Taken together, these results indicate that OsPBP1 is a novel functional C2-domain phospholipids-binding protein that is required for pollen fertility likely by regulating Ca(2+) and phospholipid signaling pathways
Rpp16|OsPBP1	Os04g0531100	LOC_Os04g44870	fertility	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice	A novel C2-domain phospholipid-binding protein, OsPBP1, is required for pollen fertility in rice
Rpp17	Os01g0841700	LOC_Os01g62430	plant defense signaling	Rice C2-domain proteins are induced and translocated to the plasma membrane in response to a fungal elicitor	These results suggest that OsERG1 proteins containing a single C2-domain are involved in plant defense signaling systems.
Rpp17|OsERG1	Os01g0841700	LOC_Os01g62430	tiller	Rpp16 and Rpp17, from a Common Origin, have Different Protein Characteristics but Both Genes are Predominantly Expressed in Rice Phloem Tissues	In situ hybridization also showed that Rpp17 was more strongly expressed in vascular tissues of tiller buds
RPP31	Os10g0543800	LOC_Os10g39740	phloem	Cloning and characterization of the gene for a phloem-specific glutathione S-transferase from rice leaves	These results suggest that RPP31 is an active GST restricted to the phloem region of normal rice leaves.
RPR1	Os11g0229500	LOC_Os11g12340	disease resistance	Chemical induction of disease resistance in rice is correlated with the expression of a gene encoding a nucleotide binding site and leucine-rich repeats	RPR1 contains a nucleotide binding site and leucine-rich repeats, thus sharing structural similarity with known disease resistance genes
RPR1	Os11g0229500	LOC_Os11g12340	disease resistance	Chemical induction of disease resistance in rice is correlated with the expression of a gene encoding a nucleotide binding site and leucine-rich repeats	While the role of RPR1 has yet to be clarified, this is the first report of the identification of a member of this gene class and its induction during the systemic expression of induced disease resistance
RPR1	Os11g0229500	LOC_Os11g12340	disease	Chemical induction of disease resistance in rice is correlated with the expression of a gene encoding a nucleotide binding site and leucine-rich repeats	RPR1 contains a nucleotide binding site and leucine-rich repeats, thus sharing structural similarity with known disease resistance genes
RPR1	Os11g0229500	LOC_Os11g12340	disease	Chemical induction of disease resistance in rice is correlated with the expression of a gene encoding a nucleotide binding site and leucine-rich repeats	While the role of RPR1 has yet to be clarified, this is the first report of the identification of a member of this gene class and its induction during the systemic expression of induced disease resistance
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	mitochondria	A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins	The rice mitochondrial genome has a sequence homologous to the gene for ribosomal protein S14 (rps14), but the coding sequence is interrupted by internal stop codons
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	mitochondria	A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins	The nuclear rps14 gene encodes a long N-terminal extension showing significant similarity to a part of mitochondrial succinate dehydrogenase subunit B (SDHB) protein from human and a malarial parasite (Plasmodium falciparum)
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	mitochondria	A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins	Considering that the rice mitochondrial genome lacks the sdhB gene but contains the rps14-related sequence, transfer of the sdhB gene seems to have occurred before the transfer of the rps14 gene
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	mitochondria	A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins	The migration of the mitochondrial rps14 sequence into the already existing sdhB gene could bestow the capacity for nuclear expression and mitochondrial targeting
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	mitochondria	A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins	A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	leaf	LPS1, Encoding Iron-Sulfur Subunit SDH2-1 of Succinate Dehydrogenase, Affects Leaf Senescence and Grain Yield in Rice	Taken together, OsSDH2-1 plays a crucial role in leaf senescence and yield formation in rice
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	leaf senescence	LPS1, Encoding Iron-Sulfur Subunit SDH2-1 of Succinate Dehydrogenase, Affects Leaf Senescence and Grain Yield in Rice	Taken together, OsSDH2-1 plays a crucial role in leaf senescence and yield formation in rice
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	senescence	LPS1, Encoding Iron-Sulfur Subunit SDH2-1 of Succinate Dehydrogenase, Affects Leaf Senescence and Grain Yield in Rice	Taken together, OsSDH2-1 plays a crucial role in leaf senescence and yield formation in rice
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	root	LPS1, Encoding Iron-Sulfur Subunit SDH2-1 of Succinate Dehydrogenase, Affects Leaf Senescence and Grain Yield in Rice	OsSDH2-1 gene was expressed in all organs tested, with higher expression in leaves, root tips, ovary and anthers
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	mitochondria	LPS1, Encoding Iron-Sulfur Subunit SDH2-1 of Succinate Dehydrogenase, Affects Leaf Senescence and Grain Yield in Rice	OsSDH2-1 protein was targeted to mitochondria
RPS14|OsSDH2-1	Os08g0120000	LOC_Os08g02640	yield	LPS1, Encoding Iron-Sulfur Subunit SDH2-1 of Succinate Dehydrogenase, Affects Leaf Senescence and Grain Yield in Rice	Taken together, OsSDH2-1 plays a crucial role in leaf senescence and yield formation in rice
RSG	Os12g0162500	LOC_Os12g06520	reproductive	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	Expression analysis of OsSPY, 14-3-3, RSG, KO, and SLR1 was confirmed in rice internode tissues during the reproductive stage of the plants by semi-quantitative RT-PCR technique
RSG	Os12g0162500	LOC_Os12g06520	growth	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	On the other hand, the 14-3-3 encoded a signaling protein which can bind and prevent the RSG (repression of shoot growth) protein function as a transcriptional repressor of the kaurene oxidase (KO) gene in the GA biosynthetic pathway
RSG	Os12g0162500	LOC_Os12g06520	ga	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	On the other hand, the 14-3-3 encoded a signaling protein which can bind and prevent the RSG (repression of shoot growth) protein function as a transcriptional repressor of the kaurene oxidase (KO) gene in the GA biosynthetic pathway
RSG	Os12g0162500	LOC_Os12g06520	shoot	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	On the other hand, the 14-3-3 encoded a signaling protein which can bind and prevent the RSG (repression of shoot growth) protein function as a transcriptional repressor of the kaurene oxidase (KO) gene in the GA biosynthetic pathway
RSG	Os12g0162500	LOC_Os12g06520	dwarf	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants	The expression analysis of RSG and KO showed an increase in TKOS4 samples compared to that of the KDML 105 and that of the two semidwarf mutants
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	drought	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Previously, we identified RSOsPR10 as a root-specific pathogenesis-related (PR) protein induced by drought and salt treatments in rice
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	drought	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	In the JA-deficient mutant hebiba, RSOsPR10 expression was up-regulated by NaCl, wounding, drought and exogenous application of JA
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	ja	RNAi knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice	Expression of RSOsPR10, involved in the JA signalling pathway, was induced in transgenic rice
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	transcription factor	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Expression of OsERF1, a transcription factor in the JA/ET pathway, was induced earlier than that of RSOsPR10 after salt, JA and ACC treatments
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	jasmonate	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Transcripts and proteins of RSOsPR10 were strongly induced by jasmonate (JA) and the ethylene (ET) precursor 1-aminocyclopropane-1-carboxylic acid (ACC), while salicylic acid (SA) almost completely suppressed these inductions
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	jasmonate	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	blast	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	The present results indicate that RSOsPR10 is a novel rice PR10 protein, which is rapidly induced in roots by salt, drought stresses and blast fungus infection possibly through activation of the jasmonic acid signaling pathway, but not the abscisic acid and salicylic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	sa	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Immunohistochemical analyses showed that RSOsPR10 strongly accumulated in cortex cells surrounding the vascular system of roots, and this accumulation was also suppressed when SA was applied simultaneously with stress or hormone treatments
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	sa	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Simultaneous SA treatment strongly inhibited the induction of RSOsPR10 expression and, to a lesser extent, induction of OsERF1 expression
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	sa	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	These results suggest that JA/ET and SA pathways function in the stress-responsive induction of RSOsPR10, and that OsERF1 may be one of the transcriptional factors in the JA/ET pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	salt	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	The present results indicate that RSOsPR10 is a novel rice PR10 protein, which is rapidly induced in roots by salt, drought stresses and blast fungus infection possibly through activation of the jasmonic acid signaling pathway, but not the abscisic acid and salicylic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	drought	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	The present results indicate that RSOsPR10 is a novel rice PR10 protein, which is rapidly induced in roots by salt, drought stresses and blast fungus infection possibly through activation of the jasmonic acid signaling pathway, but not the abscisic acid and salicylic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	jasmonic acid	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	The present results indicate that RSOsPR10 is a novel rice PR10 protein, which is rapidly induced in roots by salt, drought stresses and blast fungus infection possibly through activation of the jasmonic acid signaling pathway, but not the abscisic acid and salicylic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	jasmonic acid	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	ja	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Expression of OsERF1, a transcription factor in the JA/ET pathway, was induced earlier than that of RSOsPR10 after salt, JA and ACC treatments
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	ethylene	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Transcripts and proteins of RSOsPR10 were strongly induced by jasmonate (JA) and the ethylene (ET) precursor 1-aminocyclopropane-1-carboxylic acid (ACC), while salicylic acid (SA) almost completely suppressed these inductions
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	ethylene	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	biotic stress	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	salicylic acid	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Transcripts and proteins of RSOsPR10 were strongly induced by jasmonate (JA) and the ethylene (ET) precursor 1-aminocyclopropane-1-carboxylic acid (ACC), while salicylic acid (SA) almost completely suppressed these inductions
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	salicylic acid	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	salicylic acid	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	The present results indicate that RSOsPR10 is a novel rice PR10 protein, which is rapidly induced in roots by salt, drought stresses and blast fungus infection possibly through activation of the jasmonic acid signaling pathway, but not the abscisic acid and salicylic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	root	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	Interestingly, induction was observed almost exclusively in roots, thus we named the gene RSOsPR10 (root specific rice PR10)
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	root	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	The present results indicate that RSOsPR10 is a novel rice PR10 protein, which is rapidly induced in roots by salt, drought stresses and blast fungus infection possibly through activation of the jasmonic acid signaling pathway, but not the abscisic acid and salicylic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	root	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	salt	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Previously, we identified RSOsPR10 as a root-specific pathogenesis-related (PR) protein induced by drought and salt treatments in rice
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	salt	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Expression of OsERF1, a transcription factor in the JA/ET pathway, was induced earlier than that of RSOsPR10 after salt, JA and ACC treatments
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	root	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Previously, we identified RSOsPR10 as a root-specific pathogenesis-related (PR) protein induced by drought and salt treatments in rice
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	root	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	Immunohistochemical analyses showed that RSOsPR10 strongly accumulated in cortex cells surrounding the vascular system of roots, and this accumulation was also suppressed when SA was applied simultaneously with stress or hormone treatments
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	root	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	jasmonic	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	The present results indicate that RSOsPR10 is a novel rice PR10 protein, which is rapidly induced in roots by salt, drought stresses and blast fungus infection possibly through activation of the jasmonic acid signaling pathway, but not the abscisic acid and salicylic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	jasmonic	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway
RSOsPR10|OsPBZ14	Os12g0555000	LOC_Os12g36830	abiotic stress	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway	A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway
RSP1	Os01g0795000	LOC_Os01g58240	seedling	Molecular Cloning and Characterization of a cDNA and a Gene for Subtilisin-like Serine Proteases from Rice (Oryza sativaL.) andArabidopsis thaliana	The RSP1 was found to be expressed in seed and shoots of seedlings while ASP48 transcripts was found to be accumulated in immature silique and flowers, indicating that both RSP1 and ASP48 are organ-specific and may be involved in the specific proteolytic events that occur during organ development
RSP1	Os01g0795000	LOC_Os01g58240	flower	Molecular Cloning and Characterization of a cDNA and a Gene for Subtilisin-like Serine Proteases from Rice (Oryza sativaL.) andArabidopsis thaliana	The RSP1 was found to be expressed in seed and shoots of seedlings while ASP48 transcripts was found to be accumulated in immature silique and flowers, indicating that both RSP1 and ASP48 are organ-specific and may be involved in the specific proteolytic events that occur during organ development
RSP1	Os01g0795000	LOC_Os01g58240	shoot	Molecular Cloning and Characterization of a cDNA and a Gene for Subtilisin-like Serine Proteases from Rice (Oryza sativaL.) andArabidopsis thaliana	The RSP1 was found to be expressed in seed and shoots of seedlings while ASP48 transcripts was found to be accumulated in immature silique and flowers, indicating that both RSP1 and ASP48 are organ-specific and may be involved in the specific proteolytic events that occur during organ development
RSP1	Os01g0795000	LOC_Os01g58240	seed	Molecular Cloning and Characterization of a cDNA and a Gene for Subtilisin-like Serine Proteases from Rice (Oryza sativaL.) andArabidopsis thaliana	The RSP1 was found to be expressed in seed and shoots of seedlings while ASP48 transcripts was found to be accumulated in immature silique and flowers, indicating that both RSP1 and ASP48 are organ-specific and may be involved in the specific proteolytic events that occur during organ development
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	temperature	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	Seeds of the knockout mutant rsr1 consistently show the increased amylose content and altered fine structure of amylopectin and consequently form the round and loosely packed starch granules, resulting in decreased gelatinization temperature
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	temperature	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	In contrast, RSR1 overexpression suppresses the expression of starch synthesis genes, resulting in altered amylopectin structure and increased gelatinization temperature
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	temperature	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	Interestingly, a decreased proportion of A chains in rsr1 results in abnormal starch granules but reduced gelatinization temperature, whereas an increased proportion of A chains in RSR1-overexpressing plants leads to higher gelatinization temperatures, which is novel and different from previous reports, further indicating the complicated regulation of starch synthesis and determination of the physicochemical properties of starch
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	starch biosynthesis	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	These results demonstrate the potential of coexpression analysis for studying rice starch biosynthesis and the regulation of a complex metabolic pathway and provide informative clues, including the characterization of RSR1, to facilitate the improvement of rice quality and nutrition
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	seed size	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	In addition, rsr1 mutants have a larger seed size and increased seed mass and yield
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	ethylene	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	Among these genes, Rice Starch Regulator1 (RSR1), an APETALA2/ethylene-responsive element binding protein family transcription factor, was found to negatively regulate the expression of type I starch synthesis genes, and RSR1 deficiency results in the enhanced expression of starch synthesis genes in seeds
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	yield	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	In addition, rsr1 mutants have a larger seed size and increased seed mass and yield
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	transcription factor	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	Among these genes, Rice Starch Regulator1 (RSR1), an APETALA2/ethylene-responsive element binding protein family transcription factor, was found to negatively regulate the expression of type I starch synthesis genes, and RSR1 deficiency results in the enhanced expression of starch synthesis genes in seeds
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	seed	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	Among these genes, Rice Starch Regulator1 (RSR1), an APETALA2/ethylene-responsive element binding protein family transcription factor, was found to negatively regulate the expression of type I starch synthesis genes, and RSR1 deficiency results in the enhanced expression of starch synthesis genes in seeds
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	seed	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	Seeds of the knockout mutant rsr1 consistently show the increased amylose content and altered fine structure of amylopectin and consequently form the round and loosely packed starch granules, resulting in decreased gelatinization temperature
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	seed	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	In addition, rsr1 mutants have a larger seed size and increased seed mass and yield
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	starch	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	Among these genes, Rice Starch Regulator1 (RSR1), an APETALA2/ethylene-responsive element binding protein family transcription factor, was found to negatively regulate the expression of type I starch synthesis genes, and RSR1 deficiency results in the enhanced expression of starch synthesis genes in seeds
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	starch	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	Seeds of the knockout mutant rsr1 consistently show the increased amylose content and altered fine structure of amylopectin and consequently form the round and loosely packed starch granules, resulting in decreased gelatinization temperature
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	starch	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	In contrast, RSR1 overexpression suppresses the expression of starch synthesis genes, resulting in altered amylopectin structure and increased gelatinization temperature
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	starch	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	Interestingly, a decreased proportion of A chains in rsr1 results in abnormal starch granules but reduced gelatinization temperature, whereas an increased proportion of A chains in RSR1-overexpressing plants leads to higher gelatinization temperatures, which is novel and different from previous reports, further indicating the complicated regulation of starch synthesis and determination of the physicochemical properties of starch
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	starch	Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator	These results demonstrate the potential of coexpression analysis for studying rice starch biosynthesis and the regulation of a complex metabolic pathway and provide informative clues, including the characterization of RSR1, to facilitate the improvement of rice quality and nutrition
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	transcription factor	qHD5 encodes an AP2 factor that suppresses rice heading by down-regulating Ehd2 expression.	 We fine-mapped qHD5 and identified LOC_Os05g03040, a gene that encodes an AP2 transcription factor, as the candidate gene of qHD5 in our previous study
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	domestication	qHD5 encodes an AP2 factor that suppresses rice heading by down-regulating Ehd2 expression.	 qHD5 may have been selected during indica rice domestication
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	nucleus	qHD5 encodes an AP2 factor that suppresses rice heading by down-regulating Ehd2 expression.	 Transient expression showed that the qHD5 protein localizes to the nucleus
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	heading date	qHD5 encodes an AP2 factor that suppresses rice heading by down-regulating Ehd2 expression.	 All of these results show that qHD5 represses the heading date in rice
RSR1|qHD5	Os05g0121600	LOC_Os05g03040	flowering	qHD5 encodes an AP2 factor that suppresses rice heading by down-regulating Ehd2 expression.	 qRT-PCR analysis revealed that qHD5 represses flowering by down-regulating Ehd2
RSS1	Os02g0606700	LOC_Os02g39390	starch biosynthesis	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm	No correlation between sucrose synthase activity and starch biosynthesis was seen in these mutants, although slight elevations of RSs1 transcript levels were observed
RSS1	Os02g0606700	LOC_Os02g39390	meristem	Molecular characterization of the rice protein RSS1 required for meristematic activity under stressful conditions	We previously showed that the rice protein RSS1, whose stability is regulated depending on the cell cycle phases, is a key factor for the maintenance of meristematic activity under stressful conditions
RSS1	Os02g0606700	LOC_Os02g39390	meristem	Molecular characterization of the rice protein RSS1 required for meristematic activity under stressful conditions	Molecular characterization of the rice protein RSS1 required for meristematic activity under stressful conditions
RSS1	Os02g0606700	LOC_Os02g39390	seed	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm	RSs1 was expressed predominantly in the endosperm of milky stage rice seeds with maximum expression at 3~5 days after pollination which were 8~10-fold over leaf levels
RSS1	Os02g0606700	LOC_Os02g39390	seed	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm
RSS1	Os02g0606700	LOC_Os02g39390	shoot	Molecular characterization of the rice protein RSS1 required for meristematic activity under stressful conditions	Here we show that RSS1 interacts with all the PP1 expressed in the shoot apex of rice
RSS1	Os02g0606700	LOC_Os02g39390	phytohormone	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice	These effects of RSS1 are exerted by regulating the G1-S transition, possibly through an interaction of RSS1 with protein phosphatase 1, and are mediated by the phytohormone, cytokinin
RSS1	Os02g0606700	LOC_Os02g39390	cytokinin	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice	These effects of RSS1 are exerted by regulating the G1-S transition, possibly through an interaction of RSS1 with protein phosphatase 1, and are mediated by the phytohormone, cytokinin
RSS1	Os02g0606700	LOC_Os02g39390	endosperm	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm	) sucrose synthase 1 (RSs1) was used to determine spatial expression of the gene in rice tissues and temporal expression in developing rice endosperm
RSS1	Os02g0606700	LOC_Os02g39390	endosperm	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm	RSs1 was expressed predominantly in the endosperm of milky stage rice seeds with maximum expression at 3~5 days after pollination which were 8~10-fold over leaf levels
RSS1	Os02g0606700	LOC_Os02g39390	endosperm	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm
RSS1	Os02g0606700	LOC_Os02g39390	meristem	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice	Here we show that a rice protein, RSS1, whose stability is controlled by cell cycle phases, contributes to the vigour of meristematic cells and viability under salinity conditions
RSS1	Os02g0606700	LOC_Os02g39390	meristem	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice
RSS1	Os02g0606700	LOC_Os02g39390	salinity	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice	Here we show that a rice protein, RSS1, whose stability is controlled by cell cycle phases, contributes to the vigour of meristematic cells and viability under salinity conditions
RSS1	Os02g0606700	LOC_Os02g39390	resistant	Molecular characterization of the rice protein RSS1 required for meristematic activity under stressful conditions	Interestingly, the recombinant RSS1 protein is highly resistant to heat with respect to its anti-coagulability and binding activity to PP1
RSS1	Os02g0606700	LOC_Os02g39390	starch	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm	RSs1 transcript and activity levels were analyzed in two starch deficient mutants of rice to determine if the lesion in these mutants resides at the locus for RSs1
RSS1	Os02g0606700	LOC_Os02g39390	starch	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm	No correlation between sucrose synthase activity and starch biosynthesis was seen in these mutants, although slight elevations of RSs1 transcript levels were observed
RSS1	Os02g0606700	LOC_Os02g39390	cell cycle	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice	Here we show that a rice protein, RSS1, whose stability is controlled by cell cycle phases, contributes to the vigour of meristematic cells and viability under salinity conditions
RSS1	Os02g0606700	LOC_Os02g39390	cell cycle	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice
RSS1	Os02g0606700	LOC_Os02g39390	leaf	Cloning and expression of rice (Oryza sativa) sucrose synthase 1 (RSs1) in developing seed endosperm	RSs1 was expressed predominantly in the endosperm of milky stage rice seeds with maximum expression at 3~5 days after pollination which were 8~10-fold over leaf levels
RSS1	Os02g0606700	LOC_Os02g39390	cell cycle	Molecular characterization of the rice protein RSS1 required for meristematic activity under stressful conditions	We previously showed that the rice protein RSS1, whose stability is regulated depending on the cell cycle phases, is a key factor for the maintenance of meristematic activity under stressful conditions
RSS1	Os02g0606700	LOC_Os02g39390	salt	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.
RSS1	Os02g0606700	LOC_Os02g39390	salt	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	Finally, when expressed in the rice rss1 mutant, TdRL1 suppressed its dwarf phenotype upon salt stress, confirming that both proteins are true functional homologs required for salt stress tolerance in cereals
RSS1	Os02g0606700	LOC_Os02g39390	tolerance	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	Finally, when expressed in the rice rss1 mutant, TdRL1 suppressed its dwarf phenotype upon salt stress, confirming that both proteins are true functional homologs required for salt stress tolerance in cereals
RSS1	Os02g0606700	LOC_Os02g39390	salt stress	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.
RSS1	Os02g0606700	LOC_Os02g39390	salt stress	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	Finally, when expressed in the rice rss1 mutant, TdRL1 suppressed its dwarf phenotype upon salt stress, confirming that both proteins are true functional homologs required for salt stress tolerance in cereals
RSS1	Os02g0606700	LOC_Os02g39390	stress	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.
RSS1	Os02g0606700	LOC_Os02g39390	stress	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	Finally, when expressed in the rice rss1 mutant, TdRL1 suppressed its dwarf phenotype upon salt stress, confirming that both proteins are true functional homologs required for salt stress tolerance in cereals
RSS1	Os02g0606700	LOC_Os02g39390	dwarf	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	Finally, when expressed in the rice rss1 mutant, TdRL1 suppressed its dwarf phenotype upon salt stress, confirming that both proteins are true functional homologs required for salt stress tolerance in cereals
RSS1	Os02g0606700	LOC_Os02g39390	cell cycle	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	To further understand their function, we performed a computational analysis to compare RSS1 and TdRL1 co-expression networks revealing common gene ontologies, among which those related to cell cycle progression and regulation of microtubule (MT) networks were over-represented
RSS1	Os02g0606700	LOC_Os02g39390	stress tolerance	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.
RSS1	Os02g0606700	LOC_Os02g39390	stress tolerance	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance.	Finally, when expressed in the rice rss1 mutant, TdRL1 suppressed its dwarf phenotype upon salt stress, confirming that both proteins are true functional homologs required for salt stress tolerance in cereals
RSS3	Os11g0446000	LOC_Os11g25920	salinity	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	Here, we report that a rice nuclear factor, RICE SALT SENSITIVE3 (RSS3), regulates root cell elongation during adaptation to salinity
RSS3	Os11g0446000	LOC_Os11g25920	transcription factor	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	RSS3 is preferentially expressed in the root tip and forms a ternary complex with class-C basic helix-loop-helix (bHLH) transcription factors and JASMONATE ZIM-DOMAIN proteins, the latter of which are the key regulators of jasmonate (JA) signaling
RSS3	Os11g0446000	LOC_Os11g25920	cell elongation	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	Here, we report that a rice nuclear factor, RICE SALT SENSITIVE3 (RSS3), regulates root cell elongation during adaptation to salinity
RSS3	Os11g0446000	LOC_Os11g25920	cell elongation	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	Loss of function of RSS3 only moderately inhibits cell elongation under normal conditions, but it provokes spontaneous root cell swelling, accompanied by severe root growth inhibition, under saline conditions
RSS3	Os11g0446000	LOC_Os11g25920	cell elongation	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	These results, together with the known roles of JAs in root growth regulation, suggest that RSS3 modulates the expression of JA-responsive genes and plays a crucial role in a mechanism that sustains root cell elongation at appropriate rates under stressful conditions
RSS3	Os11g0446000	LOC_Os11g25920	growth	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	Loss of function of RSS3 only moderately inhibits cell elongation under normal conditions, but it provokes spontaneous root cell swelling, accompanied by severe root growth inhibition, under saline conditions
RSS3	Os11g0446000	LOC_Os11g25920	growth	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	These results, together with the known roles of JAs in root growth regulation, suggest that RSS3 modulates the expression of JA-responsive genes and plays a crucial role in a mechanism that sustains root cell elongation at appropriate rates under stressful conditions
RSS3	Os11g0446000	LOC_Os11g25920	jasmonate	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	RSS3 is preferentially expressed in the root tip and forms a ternary complex with class-C basic helix-loop-helix (bHLH) transcription factors and JASMONATE ZIM-DOMAIN proteins, the latter of which are the key regulators of jasmonate (JA) signaling
RSS3	Os11g0446000	LOC_Os11g25920	salt	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	Here, we report that a rice nuclear factor, RICE SALT SENSITIVE3 (RSS3), regulates root cell elongation during adaptation to salinity
RSS3	Os11g0446000	LOC_Os11g25920	root	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	Here, we report that a rice nuclear factor, RICE SALT SENSITIVE3 (RSS3), regulates root cell elongation during adaptation to salinity
RSS3	Os11g0446000	LOC_Os11g25920	root	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	Loss of function of RSS3 only moderately inhibits cell elongation under normal conditions, but it provokes spontaneous root cell swelling, accompanied by severe root growth inhibition, under saline conditions
RSS3	Os11g0446000	LOC_Os11g25920	root	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	RSS3 is preferentially expressed in the root tip and forms a ternary complex with class-C basic helix-loop-helix (bHLH) transcription factors and JASMONATE ZIM-DOMAIN proteins, the latter of which are the key regulators of jasmonate (JA) signaling
RSS3	Os11g0446000	LOC_Os11g25920	root	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation	These results, together with the known roles of JAs in root growth regulation, suggest that RSS3 modulates the expression of JA-responsive genes and plays a crucial role in a mechanism that sustains root cell elongation at appropriate rates under stressful conditions
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	seed	Single nucleotide polymorphisms and haplotype diversity in rice sucrose synthase 3	Rice sucrose synthase 3 (RSUS3) is expressed predominantly in rice seed endosperm and is thought to play an important role in starch filling during the milky stage of rice seed ripening
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	starch	Single nucleotide polymorphisms and haplotype diversity in rice sucrose synthase 3	Rice sucrose synthase 3 (RSUS3) is expressed predominantly in rice seed endosperm and is thought to play an important role in starch filling during the milky stage of rice seed ripening
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	endosperm	Single nucleotide polymorphisms and haplotype diversity in rice sucrose synthase 3	Rice sucrose synthase 3 (RSUS3) is expressed predominantly in rice seed endosperm and is thought to play an important role in starch filling during the milky stage of rice seed ripening
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	grain	Complete Structures of Three Rice Sucrose Synthase Isogenes and Differential Regulation of Their Expressions	It appears that RSus2 is a house-keeping gene, RSus3 is highly specific to the grain, and the expression of RSus1 shows a tendency to complement that of RSus3
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	grain	An expression analysis profile for the entire sucrose synthase gene family in rice	SUS3 and SUS4 were predominantly expressed in the caryopsis, indicating potential roles in carbon allocation within the filling grain
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	tolerance	Thermo-responsive allele of sucrose synthase 3 (Sus3) provides high-temperature tolerance during the ripening stage in rice (Oryza sativa L.).	In addition, we transformed the 'Habataki' Sus3 gene into 'Nipponbare', and the transformants obtained high-temperature tolerance
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	tolerance	Thermo-responsive allele of sucrose synthase 3 (Sus3) provides high-temperature tolerance during the ripening stage in rice (Oryza sativa L.).	Therefore, we conclude that the causal gene underlying the QTL Apq1 is the thermo-responsive Sus3 allele, and the increase in Sus3 expression under high-temperature condition during ripening leads to high-temperature tolerance in rice
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	sucrose	Thermo-responsive allele of sucrose synthase 3 (Sus3) provides high-temperature tolerance during the ripening stage in rice (Oryza sativa L.).	Among these, the temporal expression pattern of sucrose synthase 3 (Sus3) corresponded well with the high temperature-sensitive period during ripening, and expression of the 'Habataki' allele of Sus3 was increased under high-temperature condition
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	resistance	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	stress	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	biotic stress	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	cellulose	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	bioethanol	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.
RSUS3|SUS3|OsSUS3	Os07g0616800	LOC_Os07g42490	bioethanol production	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.	Distinct cellulose and callose accumulation for enhanced bioethanol production and biotic stress resistance in OsSUS3 transgenic rice.
RTBP1	Os02g0817800	LOC_Os02g57270	growth	Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice	rtbp1 plants displayed progressive and severe developmental abnormalities in both germination and postgermination growth of vegetative organs over four generations (G1 to G4)
RTBP1	Os02g0817800	LOC_Os02g57270	growth	Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice	Furthermore, 35S:anti-RTBP1 plants expressing lower levels of RTBP1 mRNA exhibited developmental phenotypes intermediate between the wild type and mutants in all aspects examined, including telomere length, vegetative and reproductive growth, and degree of genomic anomaly
RTBP1	Os02g0817800	LOC_Os02g57270	reproductive	Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice	Furthermore, 35S:anti-RTBP1 plants expressing lower levels of RTBP1 mRNA exhibited developmental phenotypes intermediate between the wild type and mutants in all aspects examined, including telomere length, vegetative and reproductive growth, and degree of genomic anomaly
RTBP1	Os02g0817800	LOC_Os02g57270	vegetative	Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice	rtbp1 plants displayed progressive and severe developmental abnormalities in both germination and postgermination growth of vegetative organs over four generations (G1 to G4)
RTBP1	Os02g0817800	LOC_Os02g57270	vegetative	Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice	Furthermore, 35S:anti-RTBP1 plants expressing lower levels of RTBP1 mRNA exhibited developmental phenotypes intermediate between the wild type and mutants in all aspects examined, including telomere length, vegetative and reproductive growth, and degree of genomic anomaly
RTBP1	Os02g0817800	LOC_Os02g57270	architecture	Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice	These results suggest that RTBP1 plays dual roles in rice (Oryza sativa), as both a negative regulator of telomere length and one of positive and functional components for proper architecture of telomeres
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	growth	Molecular cloning of a root hairless gene rth1 in rice	Transgenic plants with introduced OsAPY allele restored normal root hairs and plant growth, showing a complementation of rth1 phenotype
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	growth	Molecular cloning of a root hairless gene rth1 in rice	OsAPY appears to be an important gene for root hair elongation and plant growth in rice
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root	Molecular cloning of a root hairless gene rth1 in rice	Transgenic plants with introduced OsAPY allele restored normal root hairs and plant growth, showing a complementation of rth1 phenotype
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root	Molecular cloning of a root hairless gene rth1 in rice	We concluded that the root hairless phenotype of rth1 is caused by a mutation of OsAPY
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root	Molecular cloning of a root hairless gene rth1 in rice	OsAPY appears to be an important gene for root hair elongation and plant growth in rice
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	growth	Molecular cloning of a root hairless gene rth1 in rice	Transgenic plants with introduced OsAPY allele restored normal root hairs and plant growth, showing a complementation of rth1 phenotype
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root hair	Molecular cloning of a root hairless gene rth1 in rice	Transgenic plants with introduced OsAPY allele restored normal root hairs and plant growth, showing a complementation of rth1 phenotype
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root hair	Molecular cloning of a root hairless gene rth1 in rice	We concluded that the root hairless phenotype of rth1 is caused by a mutation of OsAPY
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root hair	Molecular cloning of a root hairless gene rth1 in rice	OsAPY appears to be an important gene for root hair elongation and plant growth in rice
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root hair	Molecular cloning of a root hairless gene rth1 in rice	To better understand genetic control of root hair formation in rice, we analyzed root hairless 1 (rth1) mutant that was induced by NaN3 treatment
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root hair	Molecular cloning of a root hairless gene rth1 in rice	SEM observation showed that in rth1 plants, root hair elongation was abolished after the formation of bulge
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root hair	Molecular cloning of a root hairless gene rth1 in rice	Transgenic plants with introduced OsAPY allele restored normal root hairs and plant growth, showing a complementation of rth1 phenotype
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root hair	Molecular cloning of a root hairless gene rth1 in rice	We concluded that the root hairless phenotype of rth1 is caused by a mutation of OsAPY
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root hair	Molecular cloning of a root hairless gene rth1 in rice	Molecular cloning of a root hairless gene rth1 in rice
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root	Molecular cloning of a root hairless gene rth1 in rice	To better understand genetic control of root hair formation in rice, we analyzed root hairless 1 (rth1) mutant that was induced by NaN3 treatment
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root	Molecular cloning of a root hairless gene rth1 in rice	SEM observation showed that in rth1 plants, root hair elongation was abolished after the formation of bulge
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root	Molecular cloning of a root hairless gene rth1 in rice	Transgenic plants with introduced OsAPY allele restored normal root hairs and plant growth, showing a complementation of rth1 phenotype
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root	Molecular cloning of a root hairless gene rth1 in rice	We concluded that the root hairless phenotype of rth1 is caused by a mutation of OsAPY
rth1|OsAPY	Os07g0682800	LOC_Os07g48430	root	Molecular cloning of a root hairless gene rth1 in rice	Molecular cloning of a root hairless gene rth1 in rice
RTS	Os01g0929600	LOC_Os01g70440	pollen	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	Light and near-infrared confocal microscopy of cross-sections through developing flowers of male-sterile transgenics shows that tissue-specific expression of barnase or the antisense RTS genes interrupts tapetal development, resulting in deformed non-viable pollen
RTS	Os01g0929600	LOC_Os01g70440	pollen	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	These results demonstrate a critical role of the RTS gene in pollen development in rice and the versatile application of the RTS gene promoter in directing anther-specific gene expression in both monocotyledonous and dicotyledonous plants, pointing to a potential for exploiting this gene and its promoter for engineering male sterility for hybrid production of various plant species
RTS	Os01g0929600	LOC_Os01g70440	panicle	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	A tapetum-specific gene, RTS, has been isolated by differential screening of a cDNA library from rice panicles
RTS	Os01g0929600	LOC_Os01g70440	fertility	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	Transgenic and antisense RNA approaches revealed that RTS gene is required for male fertility in rice
RTS	Os01g0929600	LOC_Os01g70440	fertility	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species
RTS	Os01g0929600	LOC_Os01g70440	anther	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	Several other sequence motifs found in other anther-specific promoters were also identified in the promoter of the RTS gene
RTS	Os01g0929600	LOC_Os01g70440	anther	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	These results demonstrate a critical role of the RTS gene in pollen development in rice and the versatile application of the RTS gene promoter in directing anther-specific gene expression in both monocotyledonous and dicotyledonous plants, pointing to a potential for exploiting this gene and its promoter for engineering male sterility for hybrid production of various plant species
RTS	Os01g0929600	LOC_Os01g70440	anther	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species
RTS	Os01g0929600	LOC_Os01g70440	sterility	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	These results demonstrate a critical role of the RTS gene in pollen development in rice and the versatile application of the RTS gene promoter in directing anther-specific gene expression in both monocotyledonous and dicotyledonous plants, pointing to a potential for exploiting this gene and its promoter for engineering male sterility for hybrid production of various plant species
RTS	Os01g0929600	LOC_Os01g70440	flower	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	Light and near-infrared confocal microscopy of cross-sections through developing flowers of male-sterile transgenics shows that tissue-specific expression of barnase or the antisense RTS genes interrupts tapetal development, resulting in deformed non-viable pollen
RTS	Os01g0929600	LOC_Os01g70440	tapetum	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	A tapetum-specific gene, RTS, has been isolated by differential screening of a cDNA library from rice panicles
RTS	Os01g0929600	LOC_Os01g70440	tapetal	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	Light and near-infrared confocal microscopy of cross-sections through developing flowers of male-sterile transgenics shows that tissue-specific expression of barnase or the antisense RTS genes interrupts tapetal development, resulting in deformed non-viable pollen
RTS	Os01g0929600	LOC_Os01g70440	sterile	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species	Light and near-infrared confocal microscopy of cross-sections through developing flowers of male-sterile transgenics shows that tissue-specific expression of barnase or the antisense RTS genes interrupts tapetal development, resulting in deformed non-viable pollen
RUPO	Os06g0126250	LOC_Os06g03610	growth	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.
RUPO	Os06g0126250	LOC_Os06g03610	pollen	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.
RUPO	Os06g0126250	LOC_Os06g03610	pollen	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.	RUPO localizes to the apical plasma membrane and vesicle of pollen tubes and is required for male gamete transmission
RUPO	Os06g0126250	LOC_Os06g03610	potassium	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.
RUPO	Os06g0126250	LOC_Os06g03610	potassium	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.	We reveal the interaction of RUPO with high-affinity potassium transporters
RUPO	Os06g0126250	LOC_Os06g03610	plasma membrane	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.	RUPO localizes to the apical plasma membrane and vesicle of pollen tubes and is required for male gamete transmission
RUPO	Os06g0126250	LOC_Os06g03610	Kinase	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.	Receptor-Like Kinase RUPO Interacts with Potassium Transporters to Regulate Pollen Tube Growth and Integrity in Rice.
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	ethylene	The role of aquaporin RWC3 in drought avoidance in rice	The expression of water channel protein RWC3 mRNA was increased in upland rice at the early response (up to 4 h) to the 20% polyethylene glycol (PEG) 6000 treatment, whereas there was no significant expression changes in lowland rice
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	seed	The role of water channel proteins and nitric oxide signaling in rice seed germination	Partial silencing of the water channel genes, OsPIP1;1 and OsPIP1;3, reduced seed germination while over-expression of OsPIP1;3 promoted seed germination under water-stress conditions
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	seed	The role of water channel proteins and nitric oxide signaling in rice seed germination	Moreover, spatial expression analysis indicates that OsPIP1;3 is expressed predominantly in embryo during seed germination
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	seed	The role of water channel proteins and nitric oxide signaling in rice seed germination	Exogenous NO stimulated the transcription of OsPIP1;1, OsPIP1;2, OsPIP1;3 and OsPIP2;8 in germinating seeds
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	drought	The role of aquaporin RWC3 in drought avoidance in rice	The up-regulation of RWC3 in upland rice fits well with the knowledge that upland rice adopts the mechanism of drought avoidance
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	drought	The role of aquaporin RWC3 in drought avoidance in rice	These results indicated that RWC3 probably played a role in drought avoidance in rice
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	drought	The role of aquaporin RWC3 in drought avoidance in rice	The role of aquaporin RWC3 in drought avoidance in rice
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	seed germination	The role of water channel proteins and nitric oxide signaling in rice seed germination	Partial silencing of the water channel genes, OsPIP1;1 and OsPIP1;3, reduced seed germination while over-expression of OsPIP1;3 promoted seed germination under water-stress conditions
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	seed germination	The role of water channel proteins and nitric oxide signaling in rice seed germination	Moreover, spatial expression analysis indicates that OsPIP1;3 is expressed predominantly in embryo during seed germination
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	xylem	Ectopic expression of a rice plasma membrane intrinsic protein (OsPIP1;3) promotes plant growth and water uptake.	Immunocytochemistry showed that OsPIP1;3 majorly accumulated on the proximal end of the endodermis and the cell surface around xylem
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	growth	Ectopic expression of a rice plasma membrane intrinsic protein (OsPIP1;3) promotes plant growth and water uptake.	Further experiment suggested that heterologous expression of OsPIP1;3 in cyanobacterium promoted bacterial growth in the condition with different CO2 gas supply
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	drought	Ectopic expression of a rice plasma membrane intrinsic protein (OsPIP1;3) promotes plant growth and water uptake.	Here, from a drought-resistant rice cultivar, we isolated an OsPIP1;3 gene SNP which is mostly expressed in rice roots, and is strongly responsive to drought stress
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	stress	Ectopic expression of a rice plasma membrane intrinsic protein (OsPIP1;3) promotes plant growth and water uptake.	Here, from a drought-resistant rice cultivar, we isolated an OsPIP1;3 gene SNP which is mostly expressed in rice roots, and is strongly responsive to drought stress
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	plasma membrane	Ectopic expression of a rice plasma membrane intrinsic protein (OsPIP1;3) promotes plant growth and water uptake.	Expression of GFP-OsPIP1;3 alone in Xenopus oocytes or rice protoplasts showed OsPIP1;3 mislocalization in ER-like neighborhood, whereas co-expression of OsPIP2;2 recruited OsPIP1;3 to the plasma membrane and led to a significant enhancement of water permeability in oocytes
RWC3|OsPIP1;3	Os02g0823100	LOC_Os02g57720	drought stress	Ectopic expression of a rice plasma membrane intrinsic protein (OsPIP1;3) promotes plant growth and water uptake.	Here, from a drought-resistant rice cultivar, we isolated an OsPIP1;3 gene SNP which is mostly expressed in rice roots, and is strongly responsive to drought stress
S27	Os08g0404200	LOC_Os08g31219	pollen	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara	Here, we found a novel loss-of-function allele of S27 in the Asian annual wild species Oryza nivara, designated S27-niv (s), that leads to F(1) pollen sterility in a cross between O
S27	Os08g0404200	LOC_Os08g31219	pollen	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara
S27	Os08g0404200	LOC_Os08g31219	sterility	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara	Here, we found a novel loss-of-function allele of S27 in the Asian annual wild species Oryza nivara, designated S27-niv (s), that leads to F(1) pollen sterility in a cross between O
S27	Os08g0404200	LOC_Os08g31219	sterility	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara
S27	Os08g0404200	LOC_Os08g31219	mitochondria	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara	S27-niv (s) is composed of two tandem mitochondrial ribosomal protein L27 genes (mtRPL27a and mtRPL27b), both of which are inactive
S27	Os08g0404200	LOC_Os08g31219	mitochondria	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	transcription factor	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	growth	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The seed germination rate, seedling growth and survival rate under salinity stress was improved in OsGTgamma-2 overexpressing lines (PZmUbi::OsGTgamma-2)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	seedling	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The seed germination rate, seedling growth and survival rate under salinity stress was improved in OsGTgamma-2 overexpressing lines (PZmUbi::OsGTgamma-2)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	seed	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The seed germination rate, seedling growth and survival rate under salinity stress was improved in OsGTgamma-2 overexpressing lines (PZmUbi::OsGTgamma-2)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	oxidative stress	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	OsGTgamma-2 specifically targeted the nucleus, was mainly expressed in roots, sheathes, stems and seeds, and was induced by salinity, osmotic and oxidative stresses and abscisic acid (ABA)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salinity	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The seed germination rate, seedling growth and survival rate under salinity stress was improved in OsGTgamma-2 overexpressing lines (PZmUbi::OsGTgamma-2)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salinity	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	Taken together, these results suggest that OsGTgamma-2 is an important positive regulator involved in rice responses to salt stress and suggest a potential role for OsGTgamma-2 in regulating salinity adaptation in rice
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salt	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salt	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	In response to salt stress, different Na+ and K+ acclamation patterns were observed in PZmUbi::OsGTgamma-2 lines and OsGTgamma-2 plants were observed
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salt	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The molecular mechanism of OsGTgamma-2 in rice salt adaptation was also investigated
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salt	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	Taken together, these results suggest that OsGTgamma-2 is an important positive regulator involved in rice responses to salt stress and suggest a potential role for OsGTgamma-2 in regulating salinity adaptation in rice
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	seed germination	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The seed germination rate, seedling growth and survival rate under salinity stress was improved in OsGTgamma-2 overexpressing lines (PZmUbi::OsGTgamma-2)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	oxidative	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	OsGTgamma-2 specifically targeted the nucleus, was mainly expressed in roots, sheathes, stems and seeds, and was induced by salinity, osmotic and oxidative stresses and abscisic acid (ABA)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salt stress	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salt stress	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	In response to salt stress, different Na+ and K+ acclamation patterns were observed in PZmUbi::OsGTgamma-2 lines and OsGTgamma-2 plants were observed
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salt stress	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	Taken together, these results suggest that OsGTgamma-2 is an important positive regulator involved in rice responses to salt stress and suggest a potential role for OsGTgamma-2 in regulating salinity adaptation in rice
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	stress	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	stress	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The seed germination rate, seedling growth and survival rate under salinity stress was improved in OsGTgamma-2 overexpressing lines (PZmUbi::OsGTgamma-2)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	stress	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	Taken together, these results suggest that OsGTgamma-2 is an important positive regulator involved in rice responses to salt stress and suggest a potential role for OsGTgamma-2 in regulating salinity adaptation in rice
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	salinity stress	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The seed germination rate, seedling growth and survival rate under salinity stress was improved in OsGTgamma-2 overexpressing lines (PZmUbi::OsGTgamma-2)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	abscisic acid	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	OsGTgamma-2 specifically targeted the nucleus, was mainly expressed in roots, sheathes, stems and seeds, and was induced by salinity, osmotic and oxidative stresses and abscisic acid (ABA)
SAB18|OsGTgamma-2	Os11g0163500	LOC_Os11g06410	seedling growth	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	The seed germination rate, seedling growth and survival rate under salinity stress was improved in OsGTgamma-2 overexpressing lines (PZmUbi::OsGTgamma-2)
SAD1	Os08g0422600	LOC_Os08g32690	plant development	SAD1, an RNA polymerase I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development	SAD1, an RNA polymerase I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development
SAD1	Os08g0422600	LOC_Os08g32690	development	SAD1, an RNA polymerase I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development	SAD1, an RNA polymerase I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development
SAD1	Os08g0422600	LOC_Os08g32690	super apical dormant	SAD1, an RNA polymerase I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development	We isolated a recessive mutant named super apical dormant (sad1-1) from a suppressor screen of d14-1.
SaF	Os01g0578500	LOC_Os01g39670	sterility	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes	Here we show that a locus for indica-japonica hybrid male sterility, Sa, comprises two adjacent genes, SaM and SaF, encoding a small ubiquitin-like modifier E3 ligase-like protein and an F-box protein, respectively
SaF	Os01g0578500	LOC_Os01g39670	sterility	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes	This allele-specific gamete elimination results from a selective interaction of SaF(+) with SaM(-), a truncated protein, but not with SaM(+) because of the presence of an inhibitory domain, although SaM(+) is required for this male sterility
SaF	Os01g0578500	LOC_Os01g39670	pollen	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	The complex locus Sa comprises two adjacently located genes, SaF and SaM, which interact to cause abortion of pollen grains carrying the japonica allele in japonica-indica hybrids
SaF	Os01g0578500	LOC_Os01g39670	pollen	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Our results firmly proved that SaF and SaM are required for the hybrid male sterility, but are not essential for pollen development
SaF	Os01g0578500	LOC_Os01g39670	development	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Our results firmly proved that SaF and SaM are required for the hybrid male sterility, but are not essential for pollen development
SaF	Os01g0578500	LOC_Os01g39670	fertility	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Here we showed that silencing of SaF or SaM by RNA interference restored male fertility in indica-japonica hybrids with heterozygous Sa
SaF	Os01g0578500	LOC_Os01g39670	pollen development	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Our results firmly proved that SaF and SaM are required for the hybrid male sterility, but are not essential for pollen development
SaF	Os01g0578500	LOC_Os01g39670	male sterility	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Our results firmly proved that SaF and SaM are required for the hybrid male sterility, but are not essential for pollen development
SaF	Os01g0578500	LOC_Os01g39670	sa	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	The complex locus Sa comprises two adjacently located genes, SaF and SaM, which interact to cause abortion of pollen grains carrying the japonica allele in japonica-indica hybrids
SaF	Os01g0578500	LOC_Os01g39670	SA	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	The complex locus Sa comprises two adjacently located genes, SaF and SaM, which interact to cause abortion of pollen grains carrying the japonica allele in japonica-indica hybrids
SaF	Os01g0578500	LOC_Os01g39670	SA	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Here we showed that silencing of SaF or SaM by RNA interference restored male fertility in indica-japonica hybrids with heterozygous Sa
SaM	Os01g0578700	LOC_Os01g39680	pollen	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes	Male semi-sterility in this heterozygous complex locus is caused by abortion of pollen carrying SaM(-)
SaM	Os01g0578700	LOC_Os01g39680	sterility	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes	Here we show that a locus for indica-japonica hybrid male sterility, Sa, comprises two adjacent genes, SaM and SaF, encoding a small ubiquitin-like modifier E3 ligase-like protein and an F-box protein, respectively
SaM	Os01g0578700	LOC_Os01g39680	sterility	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes	Male semi-sterility in this heterozygous complex locus is caused by abortion of pollen carrying SaM(-)
SaM	Os01g0578700	LOC_Os01g39680	sterility	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes	This allele-specific gamete elimination results from a selective interaction of SaF(+) with SaM(-), a truncated protein, but not with SaM(+) because of the presence of an inhibitory domain, although SaM(+) is required for this male sterility
SaM	Os01g0578700	LOC_Os01g39680	pollen	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Our results firmly proved that SaF and SaM are required for the hybrid male sterility, but are not essential for pollen development
SaM	Os01g0578700	LOC_Os01g39680	development	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Our results firmly proved that SaF and SaM are required for the hybrid male sterility, but are not essential for pollen development
SaM	Os01g0578700	LOC_Os01g39680	fertility	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Here we showed that silencing of SaF or SaM by RNA interference restored male fertility in indica-japonica hybrids with heterozygous Sa
SaM	Os01g0578700	LOC_Os01g39680	pollen development	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Our results firmly proved that SaF and SaM are required for the hybrid male sterility, but are not essential for pollen development
SaM	Os01g0578700	LOC_Os01g39680	male sterility	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Our results firmly proved that SaF and SaM are required for the hybrid male sterility, but are not essential for pollen development
SaM	Os01g0578700	LOC_Os01g39680	SA	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	Here we showed that silencing of SaF or SaM by RNA interference restored male fertility in indica-japonica hybrids with heterozygous Sa
SAMDC1	Os09g0424300	LOC_Os09g25620|LOC_Os09g25625	stress	cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5-Flanking Region	Through the application of chilling stress in rice anther, the expression of OPDAR1, Radc1, and OsSalT was repressed and the expression of SAMDC1 was induced.
SAMDC1	Os09g0424300	LOC_Os09g25620|LOC_Os09g25625	chilling stress	cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5-Flanking Region	Through the application of chilling stress in rice anther, the expression of OPDAR1, Radc1, and OsSalT was repressed and the expression of SAMDC1 was induced.
SAMDC1	Os09g0424300	LOC_Os09g25620|LOC_Os09g25625	chilling	cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5-Flanking Region	Through the application of chilling stress in rice anther, the expression of OPDAR1, Radc1, and OsSalT was repressed and the expression of SAMDC1 was induced.
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	seedling	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	seedling	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	We also found that SAPK1 and SAPK2 affected the osmotic potential following salt stress by promoting the generation of osmotically active metabolites such as proline
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 also improved reactive oxygen species (ROS) detoxification following salt stress by promoting the generation of ROS scavengers such as ascorbic acid, and by increasing the expression levels of proteins such as superoxide dismutase (SOD) and catalase (CAT)
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may be useful to improve salt tolerance in crop plants
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may be useful to improve salt tolerance in crop plants
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may be useful to improve salt tolerance in crop plants
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	We also found that SAPK1 and SAPK2 affected the osmotic potential following salt stress by promoting the generation of osmotically active metabolites such as proline
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 also improved reactive oxygen species (ROS) detoxification following salt stress by promoting the generation of ROS scavengers such as ascorbic acid, and by increasing the expression levels of proteins such as superoxide dismutase (SOD) and catalase (CAT)
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	We also found that SAPK1 and SAPK2 affected the osmotic potential following salt stress by promoting the generation of osmotically active metabolites such as proline
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 also improved reactive oxygen species (ROS) detoxification following salt stress by promoting the generation of ROS scavengers such as ascorbic acid, and by increasing the expression levels of proteins such as superoxide dismutase (SOD) and catalase (CAT)
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	ABA	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	Expression profiling revealed that SAPK1 and SAPK2 expression were strongly induced by drought, NaCl, and PEG treatment, but not by ABA
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	protein kinase	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	stress tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	stress tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	stress tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	reactive oxygen species	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 also improved reactive oxygen species (ROS) detoxification following salt stress by promoting the generation of ROS scavengers such as ascorbic acid, and by increasing the expression levels of proteins such as superoxide dismutase (SOD) and catalase (CAT)
SAPK1|OsSAPK1	Os03g0390200	LOC_Os03g27280	sucrose	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK10|OsSAPK10	Os03g0610900	LOC_Os03g41460	 ABA 	Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors	We have shown recently that three members of the rice SnRK2 protein kinase family, SAPK8, SAPK9 and SAPK10, are activated by ABA signal as well as by hyperosmotic stress
SAPK10|OsSAPK10	Os03g0610900	LOC_Os03g41460	Kinase	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
SAPK10|OsSAPK10	Os03g0610900	LOC_Os03g41460	kinase	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
SAPK10|OsSAPK10	Os03g0610900	LOC_Os03g41460	ABA	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
SAPK10|OsSAPK10	Os03g0610900	LOC_Os03g41460	 ABA 	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
SAPK10|OsSAPK10	Os03g0610900	LOC_Os03g41460	ABA biosynthesis	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	drought	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	tolerance	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	drought stress	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	drought stress 	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	abscisic acid	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	growth	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 Under salt stress, sapk1, sapk2 and, in particular, sapk1/2 mutants, exhibited reduced germination rates, more severe growth inhibition, more distinct chlorosis, reduced chlorophyll contents, and reduced survival rates in comparison with the wild-type plants
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	seedling	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	seedling	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 Under salt stress, sapk1, sapk2 and, in particular, sapk1/2 mutants, exhibited reduced germination rates, more severe growth inhibition, more distinct chlorosis, reduced chlorophyll contents, and reduced survival rates in comparison with the wild-type plants
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 We also found that SAPK1 and SAPK2 affected the osmotic potential following salt stress by promoting the generation of osmotically active metabolites such as proline
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 SAPK1 and SAPK2 also improved reactive oxygen species (ROS) detoxification following salt stress by promoting the generation of ROS scavengers such as ascorbic acid, and by increasing the expression levels of proteins such as superoxide dismutase (SOD) and catalase (CAT)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 SAPK1 and SAPK2 may be useful to improve salt tolerance in crop plants
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 SAPK1 and SAPK2 may be useful to improve salt tolerance in crop plants
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 SAPK1 and SAPK2 may be useful to improve salt tolerance in crop plants
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 Under salt stress, sapk1, sapk2 and, in particular, sapk1/2 mutants, exhibited reduced germination rates, more severe growth inhibition, more distinct chlorosis, reduced chlorophyll contents, and reduced survival rates in comparison with the wild-type plants
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 We also found that SAPK1 and SAPK2 affected the osmotic potential following salt stress by promoting the generation of osmotically active metabolites such as proline
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 SAPK1 and SAPK2 also improved reactive oxygen species (ROS) detoxification following salt stress by promoting the generation of ROS scavengers such as ascorbic acid, and by increasing the expression levels of proteins such as superoxide dismutase (SOD) and catalase (CAT)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	salt stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 We also found that SAPK1 and SAPK2 affected the osmotic potential following salt stress by promoting the generation of osmotically active metabolites such as proline
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 SAPK1 and SAPK2 also improved reactive oxygen species (ROS) detoxification following salt stress by promoting the generation of ROS scavengers such as ascorbic acid, and by increasing the expression levels of proteins such as superoxide dismutase (SOD) and catalase (CAT)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	ABA	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	Expression profiling revealed that SAPK1 and SAPK2 expression were strongly induced by drought, NaCl, and PEG treatment, but not by ABA
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	protein kinase	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 These results suggest that SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress tolerance	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	reactive oxygen species	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	 SAPK1 and SAPK2 also improved reactive oxygen species (ROS) detoxification following salt stress by promoting the generation of ROS scavengers such as ascorbic acid, and by increasing the expression levels of proteins such as superoxide dismutase (SOD) and catalase (CAT)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	sucrose	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	nitrogen	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	nitrogen	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	  CONCLUSION: These results suggest that SAPK2 could enhance grain production by regulating nitrogen utilization efficiency under RDS
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	root	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	 The examination of rice seedling growth and development under nutrient-deprived conditions (-N, -K, and<U+2009>-<U+2009>P) proved that SAPK2 can significantly affect rice seedling growth and root development in hydroponic cultures lacking N and K
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	growth	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	 The examination of rice seedling growth and development under nutrient-deprived conditions (-N, -K, and<U+2009>-<U+2009>P) proved that SAPK2 can significantly affect rice seedling growth and root development in hydroponic cultures lacking N and K
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	grain	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	japonica, WT) plants, the sapk2 rice mutant lines were shorter and produced fewer grains per panicle, smaller grains and lower grain yield under reproductive stage drought stress (RDS)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	grain	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	  CONCLUSION: These results suggest that SAPK2 could enhance grain production by regulating nitrogen utilization efficiency under RDS
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	seedling	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	 The examination of rice seedling growth and development under nutrient-deprived conditions (-N, -K, and<U+2009>-<U+2009>P) proved that SAPK2 can significantly affect rice seedling growth and root development in hydroponic cultures lacking N and K
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	development	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	 The examination of rice seedling growth and development under nutrient-deprived conditions (-N, -K, and<U+2009>-<U+2009>P) proved that SAPK2 can significantly affect rice seedling growth and root development in hydroponic cultures lacking N and K
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	grains per panicle	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	japonica, WT) plants, the sapk2 rice mutant lines were shorter and produced fewer grains per panicle, smaller grains and lower grain yield under reproductive stage drought stress (RDS)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	drought	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	drought	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	japonica, WT) plants, the sapk2 rice mutant lines were shorter and produced fewer grains per panicle, smaller grains and lower grain yield under reproductive stage drought stress (RDS)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	potassium	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	 Subsequent analysis suggested that SAPK2 considerably influences the nitrogen, phosphorus, and potassium contents of rice grains
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	grain yield	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	japonica, WT) plants, the sapk2 rice mutant lines were shorter and produced fewer grains per panicle, smaller grains and lower grain yield under reproductive stage drought stress (RDS)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	yield	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	yield	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	japonica, WT) plants, the sapk2 rice mutant lines were shorter and produced fewer grains per panicle, smaller grains and lower grain yield under reproductive stage drought stress (RDS)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	root development	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	 The examination of rice seedling growth and development under nutrient-deprived conditions (-N, -K, and<U+2009>-<U+2009>P) proved that SAPK2 can significantly affect rice seedling growth and root development in hydroponic cultures lacking N and K
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	stress	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	japonica, WT) plants, the sapk2 rice mutant lines were shorter and produced fewer grains per panicle, smaller grains and lower grain yield under reproductive stage drought stress (RDS)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	reproductive	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	reproductive	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	japonica, WT) plants, the sapk2 rice mutant lines were shorter and produced fewer grains per panicle, smaller grains and lower grain yield under reproductive stage drought stress (RDS)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	drought stress	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	drought stress	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	japonica, WT) plants, the sapk2 rice mutant lines were shorter and produced fewer grains per panicle, smaller grains and lower grain yield under reproductive stage drought stress (RDS)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	nitrate	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	 Moreover, the NO3- influx rate and nitrate concentration analysis indicated that SAPK2 promotes nitrate uptake and assimilation by regulating nitrate-related transporters
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	drought stress 	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	japonica, WT) plants, the sapk2 rice mutant lines were shorter and produced fewer grains per panicle, smaller grains and lower grain yield under reproductive stage drought stress (RDS)
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	seedling growth	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	 The examination of rice seedling growth and development under nutrient-deprived conditions (-N, -K, and<U+2009>-<U+2009>P) proved that SAPK2 can significantly affect rice seedling growth and root development in hydroponic cultures lacking N and K
SAPK2|OsSAPK2	Os07g0622000	LOC_Os07g42940	PCD	ABA-triggered ROS burst in rice developing anthers is critical for tapetal programmed cell death induction and heat stress-induced pollen abortion.	 The OsSAPK2 knockout mutants showed the impaired PCD responses in the absence of HT
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	grain	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	grain	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 All gronomic traits analyses demonstrated that OsSAPK3 could improve rice yield by affecting the regulation of tiller numbers and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	grain	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 More interestingly, OsSAPK3 could improve rice yield by indirectly regulating tiller number and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	grain size	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 All gronomic traits analyses demonstrated that OsSAPK3 could improve rice yield by affecting the regulation of tiller numbers and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	grain size	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 More interestingly, OsSAPK3 could improve rice yield by indirectly regulating tiller number and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	tiller	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 All gronomic traits analyses demonstrated that OsSAPK3 could improve rice yield by affecting the regulation of tiller numbers and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	tiller	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 More interestingly, OsSAPK3 could improve rice yield by indirectly regulating tiller number and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	drought	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	drought	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 Physiological and metabolic analyses showed that OsSAPK3 might play an important role in drought stress signaling pathway by affecting osmotic adjustment and osmolytes, ROS detoxification and expression of ABA dependent and independent dehydration-responsive genes
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	drought	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 CONCLUSION: OsSAPK3 plays an important role in both ABA-dependent and ABA-independent drought stress responses
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	stress	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 Physiological and metabolic analyses showed that OsSAPK3 might play an important role in drought stress signaling pathway by affecting osmotic adjustment and osmolytes, ROS detoxification and expression of ABA dependent and independent dehydration-responsive genes
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	stress	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 CONCLUSION: OsSAPK3 plays an important role in both ABA-dependent and ABA-independent drought stress responses
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	drought stress	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 Physiological and metabolic analyses showed that OsSAPK3 might play an important role in drought stress signaling pathway by affecting osmotic adjustment and osmolytes, ROS detoxification and expression of ABA dependent and independent dehydration-responsive genes
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	drought stress	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 CONCLUSION: OsSAPK3 plays an important role in both ABA-dependent and ABA-independent drought stress responses
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	drought stress 	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 Physiological and metabolic analyses showed that OsSAPK3 might play an important role in drought stress signaling pathway by affecting osmotic adjustment and osmolytes, ROS detoxification and expression of ABA dependent and independent dehydration-responsive genes
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	drought stress 	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 CONCLUSION: OsSAPK3 plays an important role in both ABA-dependent and ABA-independent drought stress responses
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	grain yield	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	tolerance	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	yield	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	yield	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 All gronomic traits analyses demonstrated that OsSAPK3 could improve rice yield by affecting the regulation of tiller numbers and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	yield	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 More interestingly, OsSAPK3 could improve rice yield by indirectly regulating tiller number and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	ABA	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 RESULTS: The expression of OsSAPK3 was up regulated by drought, NaCl, PEG and ABA
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	ABA	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 OsSAPK3 mutated seedings (sapk3-1 and sapk3-2) showed reduced hypersensitivity to exogenous ABA
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	ABA	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 Physiological and metabolic analyses showed that OsSAPK3 might play an important role in drought stress signaling pathway by affecting osmotic adjustment and osmolytes, ROS detoxification and expression of ABA dependent and independent dehydration-responsive genes
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	drought tolerance	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	detoxification	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 Physiological and metabolic analyses showed that OsSAPK3 might play an important role in drought stress signaling pathway by affecting osmotic adjustment and osmolytes, ROS detoxification and expression of ABA dependent and independent dehydration-responsive genes
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	tiller number	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 All gronomic traits analyses demonstrated that OsSAPK3 could improve rice yield by affecting the regulation of tiller numbers and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	tiller number	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 More interestingly, OsSAPK3 could improve rice yield by indirectly regulating tiller number and grain size
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	 ABA 	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 Physiological and metabolic analyses showed that OsSAPK3 might play an important role in drought stress signaling pathway by affecting osmotic adjustment and osmolytes, ROS detoxification and expression of ABA dependent and independent dehydration-responsive genes
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	stress response	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 CONCLUSION: OsSAPK3 plays an important role in both ABA-dependent and ABA-independent drought stress responses
SAPK3|REK|OsSAPK3	Os10g0564500	LOC_Os10g41490	drought stress response	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	 CONCLUSION: OsSAPK3 plays an important role in both ABA-dependent and ABA-independent drought stress responses
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	seedling	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	Induced expression of SAPK4 resulted in improved germination, growth and development under salt stress both in seedlings and mature plants
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salinity	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	CONCLUSION: Our results show that SAPK4 regulates ion homeostasis and growth and development under salinity and suggest function of SAPK4 as a regulatory factor in plant salt stress acclimation
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	oxidative	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	SAPK4-regulated genes with functions in ion homeostasis and oxidative stress response were identified: the vacuolar H+-ATPase, the Na+/H+ antiporter NHX1, the Cl- channel OsCLC1 and a catalase
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt	Spermidine-mediated in vitro phosphorylation of transcriptional regulator OSBZ8 by SNF1-type serine/threonine protein kinase SAPK4 homolog in indica rice	Here, we address a specific role of spermidine during high salt stress by studying its interaction with OSPDK, a sucrose nonfermenting 1-related protein kinase2 (SnRK2)-type serine/threonine protein kinase SAPK4 homolog in indica rice
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	In this study, we characterized the function of the sucrose nonfermenting 1-related protein kinase2 (SnRK2) SAPK4 in the salt stress response of rice
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	To examine the role of SAPK4 in salt tolerance we generated transgenic rice plants with over-expression of rice SAPK4 under control of the CaMV-35S promoter
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	Induced expression of SAPK4 resulted in improved germination, growth and development under salt stress both in seedlings and mature plants
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	In response to salt stress, the SAPK4-overexpressing rice accumulated less Na+ and Cl- and showed improved photosynthesis
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	CONCLUSION: Our results show that SAPK4 regulates ion homeostasis and growth and development under salinity and suggest function of SAPK4 as a regulatory factor in plant salt stress acclimation
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	photosynthesis	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	In response to salt stress, the SAPK4-overexpressing rice accumulated less Na+ and Cl- and showed improved photosynthesis
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	growth	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	Induced expression of SAPK4 resulted in improved germination, growth and development under salt stress both in seedlings and mature plants
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	growth	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	CONCLUSION: Our results show that SAPK4 regulates ion homeostasis and growth and development under salinity and suggest function of SAPK4 as a regulatory factor in plant salt stress acclimation
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt stress	Spermidine-mediated in vitro phosphorylation of transcriptional regulator OSBZ8 by SNF1-type serine/threonine protein kinase SAPK4 homolog in indica rice	Here, we address a specific role of spermidine during high salt stress by studying its interaction with OSPDK, a sucrose nonfermenting 1-related protein kinase2 (SnRK2)-type serine/threonine protein kinase SAPK4 homolog in indica rice
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	transcription factor	Spermidine-mediated in vitro phosphorylation of transcriptional regulator OSBZ8 by SNF1-type serine/threonine protein kinase SAPK4 homolog in indica rice	In this report, we demonstrate that spermidine mediates in vitro phosphorylation of OSBZ8, a bZIP class of ABRE-binding transcription factor, by OSPDK
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt tolerance	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	To examine the role of SAPK4 in salt tolerance we generated transgenic rice plants with over-expression of rice SAPK4 under control of the CaMV-35S promoter
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	homeostasis	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	SAPK4-regulated genes with functions in ion homeostasis and oxidative stress response were identified: the vacuolar H+-ATPase, the Na+/H+ antiporter NHX1, the Cl- channel OsCLC1 and a catalase
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	homeostasis	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	CONCLUSION: Our results show that SAPK4 regulates ion homeostasis and growth and development under salinity and suggest function of SAPK4 as a regulatory factor in plant salt stress acclimation
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt stress	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	In this study, we characterized the function of the sucrose nonfermenting 1-related protein kinase2 (SnRK2) SAPK4 in the salt stress response of rice
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt stress	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	Induced expression of SAPK4 resulted in improved germination, growth and development under salt stress both in seedlings and mature plants
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt stress	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	In response to salt stress, the SAPK4-overexpressing rice accumulated less Na+ and Cl- and showed improved photosynthesis
SAPK4|OSPDK	Os01g0869900	LOC_Os01g64970	salt stress	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice	CONCLUSION: Our results show that SAPK4 regulates ion homeostasis and growth and development under salinity and suggest function of SAPK4 as a regulatory factor in plant salt stress acclimation
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	vegetative	A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling	The OSRK1 transcript level was undetectable in vegetative tissues, but significantly increased by hyperosmotic stress and Abscisic acid (ABA)
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	seed	A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling	Finally, ectopic expression of OSRK1 in transgenic tobacco resulted in a reduced sensitivity to ABA in seed germination and root elongation
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	drought	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	seed germination	A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling	Finally, ectopic expression of OSRK1 in transgenic tobacco resulted in a reduced sensitivity to ABA in seed germination and root elongation
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	root	A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling	Finally, ectopic expression of OSRK1 in transgenic tobacco resulted in a reduced sensitivity to ABA in seed germination and root elongation
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	 ABA 	Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice	Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	 ABA 	A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling	Finally, ectopic expression of OSRK1 in transgenic tobacco resulted in a reduced sensitivity to ABA in seed germination and root elongation
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	 ABA 	A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling	These findings suggest that OSRK1 is associated with ABA signaling, possibly through the phosphorylation of ABF family in vivo
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	transcription factor	A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling	Interestingly, OSRK1 showed strong substrate preference for rice bZIP transcription factors and uncommon cofactor requirement for Mn(2+) over Mg(2+)
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	temperature	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	resistance	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	drought	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	stress	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	Kinase	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	protein kinase	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	tolerance	Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice.	Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice.
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	tolerance	Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice.	 The function of OsSAPK6 in chilling tolerance depended on IPA1, and overexpression of OsCBF3 could rescue the chilling-sensitive phenotype of ipa1 loss-of-function mutant
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	chilling	Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice.	Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice.
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	chilling	Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice.	 Under chilling stress, OsSAPK6 could phosphorylate IPA1 and increase its stability
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	chilling	Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice.	 The function of OsSAPK6 in chilling tolerance depended on IPA1, and overexpression of OsCBF3 could rescue the chilling-sensitive phenotype of ipa1 loss-of-function mutant
SAPK6|OSRK1|OsSAPK6	Os02g0551100	LOC_Os02g34600	chilling stress	Chilling-induced phosphorylation of IPA1 by OsSAPK6 activates chilling tolerance responses in rice.	 Under chilling stress, OsSAPK6 could phosphorylate IPA1 and increase its stability
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	ABA	Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors	We have shown recently that three members of the rice SnRK2 protein kinase family, SAPK8, SAPK9 and SAPK10, are activated by ABA signal as well as by hyperosmotic stress
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	resistance	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	resistance	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Moreover, in vivo and in vitro experiments demonstrated that OsSAPK9 forms a protein complex with the molecular chaperones OsSGT1 and OsHsp90, and transgenic plants overexpressing OsSGT1 exhibited decreased tolerances to salt stress and significantly increased resistance levels to bacterial blight
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	resistance	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	This study confirms that OsSAPK9 functions as a positive regulator of salt-stress responses and disease resistance through its interaction with OsSGT1 in rice
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	disease	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	This study confirms that OsSAPK9 functions as a positive regulator of salt-stress responses and disease resistance through its interaction with OsSGT1 in rice
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	disease resistance	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	This study confirms that OsSAPK9 functions as a positive regulator of salt-stress responses and disease resistance through its interaction with OsSGT1 in rice
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	blight	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	blight	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Moreover, in vivo and in vitro experiments demonstrated that OsSAPK9 forms a protein complex with the molecular chaperones OsSGT1 and OsHsp90, and transgenic plants overexpressing OsSGT1 exhibited decreased tolerances to salt stress and significantly increased resistance levels to bacterial blight
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	bacterial blight	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	bacterial blight	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Moreover, in vivo and in vitro experiments demonstrated that OsSAPK9 forms a protein complex with the molecular chaperones OsSGT1 and OsHsp90, and transgenic plants overexpressing OsSGT1 exhibited decreased tolerances to salt stress and significantly increased resistance levels to bacterial blight
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	salt	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	salt	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Moreover, in vivo and in vitro experiments demonstrated that OsSAPK9 forms a protein complex with the molecular chaperones OsSGT1 and OsHsp90, and transgenic plants overexpressing OsSGT1 exhibited decreased tolerances to salt stress and significantly increased resistance levels to bacterial blight
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	tolerance	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	salt stress	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	salt stress	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Moreover, in vivo and in vitro experiments demonstrated that OsSAPK9 forms a protein complex with the molecular chaperones OsSGT1 and OsHsp90, and transgenic plants overexpressing OsSGT1 exhibited decreased tolerances to salt stress and significantly increased resistance levels to bacterial blight
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	stress	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	stress	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Moreover, in vivo and in vitro experiments demonstrated that OsSAPK9 forms a protein complex with the molecular chaperones OsSGT1 and OsHsp90, and transgenic plants overexpressing OsSGT1 exhibited decreased tolerances to salt stress and significantly increased resistance levels to bacterial blight
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	Kinase	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	protein kinase	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	stress response	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Thus, OsSAPK9 may function as a center node regulator of salt-stress responses and disease-resistance pathways through its interaction with OsSGT1 in rice
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	stress response	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	This study confirms that OsSAPK9 functions as a positive regulator of salt-stress responses and disease resistance through its interaction with OsSGT1 in rice
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	node	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Thus, OsSAPK9 may function as a center node regulator of salt-stress responses and disease-resistance pathways through its interaction with OsSGT1 in rice
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	stress	Endogenous ABA alleviates rice ammonium toxicity by reducing ROS and free ammonium via regulation of the SAPK9-bZIP20 pathway	When OsSAPK9 or OsbZIP20 are knocked out in rice, ABA-mediated antioxidant and GS/GOGAT activity enhancement under high-NH4+ stress disappear, and the two mutants are more sensitive to high-NH4+ stress compared with their wild types
SAPK9|OsSAPK9	Os12g0586100	LOC_Os12g39630	ABA	Endogenous ABA alleviates rice ammonium toxicity by reducing ROS and free ammonium via regulation of the SAPK9-bZIP20 pathway	Using RNA sequencing and quantitative real-time PCR approaches, we ascertain that two genes, OsSAPK9 and OsbZIP20, are induced both by high NH4+ and by ABA
SAUR39	Os09g0545300	LOC_Os09g37330	cytokinin	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	The expression of the rice (Oryza sativa) SAUR39 gene showed rapid induction by transient change in different environmental factors, including auxin, nitrogen, salinity, cytokinin, and anoxia
SAUR39	Os09g0545300	LOC_Os09g37330	yield	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	Transgenic rice plants overexpressing the SAUR39 gene resulted in lower shoot and root growth, altered shoot morphology, smaller vascular tissue, and lower yield compared with wild-type plants
SAUR39	Os09g0545300	LOC_Os09g37330	salinity	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	The expression of the rice (Oryza sativa) SAUR39 gene showed rapid induction by transient change in different environmental factors, including auxin, nitrogen, salinity, cytokinin, and anoxia
SAUR39	Os09g0545300	LOC_Os09g37330	growth	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	Transgenic rice plants overexpressing the SAUR39 gene resulted in lower shoot and root growth, altered shoot morphology, smaller vascular tissue, and lower yield compared with wild-type plants
SAUR39	Os09g0545300	LOC_Os09g37330	auxin	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	The expression of the rice (Oryza sativa) SAUR39 gene showed rapid induction by transient change in different environmental factors, including auxin, nitrogen, salinity, cytokinin, and anoxia
SAUR39	Os09g0545300	LOC_Os09g37330	auxin	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	The SAUR39 gene was expressed at higher levels in older leaves, unlike auxin biosynthesis, which occurs largely in the meristematic region
SAUR39	Os09g0545300	LOC_Os09g37330	auxin	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	Taken together, the results suggest that SAUR39 acts as a negative regulator for auxin synthesis and transport
SAUR39	Os09g0545300	LOC_Os09g37330	auxin	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice
SAUR39	Os09g0545300	LOC_Os09g37330	nitrogen	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	The expression of the rice (Oryza sativa) SAUR39 gene showed rapid induction by transient change in different environmental factors, including auxin, nitrogen, salinity, cytokinin, and anoxia
SAUR39	Os09g0545300	LOC_Os09g37330	root	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	Transgenic rice plants overexpressing the SAUR39 gene resulted in lower shoot and root growth, altered shoot morphology, smaller vascular tissue, and lower yield compared with wild-type plants
SAUR39	Os09g0545300	LOC_Os09g37330	shoot	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	Transgenic rice plants overexpressing the SAUR39 gene resulted in lower shoot and root growth, altered shoot morphology, smaller vascular tissue, and lower yield compared with wild-type plants
SAUR39	Os09g0545300	LOC_Os09g37330	meristem	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice	The SAUR39 gene was expressed at higher levels in older leaves, unlike auxin biosynthesis, which occurs largely in the meristematic region
SBDCP1	Os01g0856900	LOC_Os01g63810	starch	Re-programming of gene expression in the CS8 rice line over-expressing ADPglucose pyrophosphorylase induces a suppressor of starch biosynthesis.	Reciprocal immunoprecipitation and pull-down assays indicated an interaction between SBDCP1 and starch synthase IIIa (SSIIIa), which was down-regulated at the protein level in the CS8 line
SBDCP1	Os01g0856900	LOC_Os01g63810	starch	Re-programming of gene expression in the CS8 rice line over-expressing ADPglucose pyrophosphorylase induces a suppressor of starch biosynthesis.	Furthermore, binding by SBDCP1 inhibited SSIIIa starch polymerization activity in a non-competitive manner
SBDCP1	Os01g0856900	LOC_Os01g63810	starch	Re-programming of gene expression in the CS8 rice line over-expressing ADPglucose pyrophosphorylase induces a suppressor of starch biosynthesis.	Surprisingly, artificial microRNA gene suppression of SBDCP1 restored protein expression levels of SSIIIa in the CS8 line resulting in starch with lower amylose content and increased amylopectin chains with a higher degree of polymerization
SBDCP1	Os01g0856900	LOC_Os01g63810	amylose content	Re-programming of gene expression in the CS8 rice line over-expressing ADPglucose pyrophosphorylase induces a suppressor of starch biosynthesis.	Surprisingly, artificial microRNA gene suppression of SBDCP1 restored protein expression levels of SSIIIa in the CS8 line resulting in starch with lower amylose content and increased amylopectin chains with a higher degree of polymerization
SBI	Os05g0514600	LOC_Os05g43880	resistance	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Genetic analyses indicate that SBI is a semi-dominant gene affecting rice height and lodging resistance
SBI	Os05g0514600	LOC_Os05g43880	resistance	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Breeding with higher activity of the SBI allele generates new rice varieties with improved lodging resistance and increased yield
SBI	Os05g0514600	LOC_Os05g43880	resistance	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	The discovery of the SBI provides a desirable gene resource for producing semi-dwarf rice phenotypes and offers an effective strategy for breeding rice varieties with lodging resistance and high yield
SBI	Os05g0514600	LOC_Os05g43880	yield	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Breeding with higher activity of the SBI allele generates new rice varieties with improved lodging resistance and increased yield
SBI	Os05g0514600	LOC_Os05g43880	yield	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	The discovery of the SBI provides a desirable gene resource for producing semi-dwarf rice phenotypes and offers an effective strategy for breeding rice varieties with lodging resistance and high yield
SBI	Os05g0514600	LOC_Os05g43880	culm	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	SBI is predominantly expressed in culm basal internodes
SBI	Os05g0514600	LOC_Os05g43880	lodging	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Genetic analyses indicate that SBI is a semi-dominant gene affecting rice height and lodging resistance
SBI	Os05g0514600	LOC_Os05g43880	lodging	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Breeding with higher activity of the SBI allele generates new rice varieties with improved lodging resistance and increased yield
SBI	Os05g0514600	LOC_Os05g43880	lodging	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	The discovery of the SBI provides a desirable gene resource for producing semi-dwarf rice phenotypes and offers an effective strategy for breeding rice varieties with lodging resistance and high yield
SBI	Os05g0514600	LOC_Os05g43880	lodging resistance	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Genetic analyses indicate that SBI is a semi-dominant gene affecting rice height and lodging resistance
SBI	Os05g0514600	LOC_Os05g43880	lodging resistance	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Breeding with higher activity of the SBI allele generates new rice varieties with improved lodging resistance and increased yield
SBI	Os05g0514600	LOC_Os05g43880	lodging resistance	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	The discovery of the SBI provides a desirable gene resource for producing semi-dwarf rice phenotypes and offers an effective strategy for breeding rice varieties with lodging resistance and high yield
SBI	Os05g0514600	LOC_Os05g43880	breeding	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Breeding with higher activity of the SBI allele generates new rice varieties with improved lodging resistance and increased yield
SBI	Os05g0514600	LOC_Os05g43880	breeding	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	The discovery of the SBI provides a desirable gene resource for producing semi-dwarf rice phenotypes and offers an effective strategy for breeding rice varieties with lodging resistance and high yield
SBI	Os05g0514600	LOC_Os05g43880	height	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Genetic analyses indicate that SBI is a semi-dominant gene affecting rice height and lodging resistance
SBI	Os05g0514600	LOC_Os05g43880	height	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	SBI allelic variants display different activities and are associated with the height of rice varieties
Sc	Os03g0247300	LOC_Os03g14310	sterility	Genomic structural variation-mediated allelic suppression causes hybrid male sterility in rice.	Here we show that structural changes and copy number variation at the Sc locus confer japonica-indica hybrid male sterility
Sc	Os03g0247300	LOC_Os03g14310	male sterility	Genomic structural variation-mediated allelic suppression causes hybrid male sterility in rice.	Here we show that structural changes and copy number variation at the Sc locus confer japonica-indica hybrid male sterility
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	dwarf	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	The suppressive function of OsSPY in GA signaling was supported by the findings that the dwarfism was partially rescued and OsGA20ox2 (GA20 oxidase) expression was reduced in GA-deficient and GA-insensitive mutants by the knockdown of OsSPY function
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	ga	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	The suppressive function of OsSPY in GA signaling was supported by the findings that the dwarfism was partially rescued and OsGA20ox2 (GA20 oxidase) expression was reduced in GA-deficient and GA-insensitive mutants by the knockdown of OsSPY function
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	ga	Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice	Moreover, overexpression of SLRL1 in normal rice plants induced a dwarf phenotype with an increased level of OsGA20ox2 gene expression and diminished the GA-induced shoot elongation, suggesting that SLRL1 acts as a repressor of GA signaling
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	ga	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice	Furthermore, OsGSR1 RNAi plants show a reduced sensitivity to GA treatment, an increased expression of the GA biosynthetic gene OsGA20ox2, which is feedback inhibited by GA signaling, and an elevated level of endogenous GA: together, these suggest that OsGSR1 is a positive regulator of GA signaling
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	dwarf	A role of OsGA20ox1 , encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice	), OsGA20ox2 ( SD1 ), is well known as the Green Revolution gene, and loss-of function mutation in this locus causes semi-dwarfism
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	gibberellin	Green revolution: a mutant gibberellin-synthesis gene in rice	The short stature of IR8 is due to a mutation in the plant's sd1 gene, and here we identify this gene as encoding an oxidase enzyme involved in the biosynthesis of gibberellin, a plant growth hormone
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	gibberellin	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice	The expression levels of gibberellin (GA) biosynthetic genes including OsCPS1, OsKS1, OsKO1, OsKAO, OsGA20ox2/SD1 and OsGA2ox3 were significantly increased in d62 mutant
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	dwarf	Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice	Moreover, overexpression of SLRL1 in normal rice plants induced a dwarf phenotype with an increased level of OsGA20ox2 gene expression and diminished the GA-induced shoot elongation, suggesting that SLRL1 acts as a repressor of GA signaling
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	growth	Green revolution: a mutant gibberellin-synthesis gene in rice	The short stature of IR8 is due to a mutation in the plant's sd1 gene, and here we identify this gene as encoding an oxidase enzyme involved in the biosynthesis of gibberellin, a plant growth hormone
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	shoot	Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice	Moreover, overexpression of SLRL1 in normal rice plants induced a dwarf phenotype with an increased level of OsGA20ox2 gene expression and diminished the GA-induced shoot elongation, suggesting that SLRL1 acts as a repressor of GA signaling
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	ga	The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism	In this report, we show that a rice (Oryza sativa) YABBY1 (YAB1) gene had a similar expression pattern as key rice GA biosynthetic genes GA3ox2 and GA20ox2
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	grain protein content	Control of grain protein contents through SEMIDWARF1 mutant alleles: sd1 increases the grain protein content in Dee-geo-woo-gen but not in Reimei.	Control of grain protein contents through SEMIDWARF1 mutant alleles: sd1 increases the grain protein content in Dee-geo-woo-gen but not in Reimei.
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	grain protein	Control of grain protein contents through SEMIDWARF1 mutant alleles: sd1 increases the grain protein content in Dee-geo-woo-gen but not in Reimei.	Control of grain protein contents through SEMIDWARF1 mutant alleles: sd1 increases the grain protein content in Dee-geo-woo-gen but not in Reimei.
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	transcription factor	Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.	When submerged, plants carrying the deepwater rice-specific SD1 haplotype amplify a signaling relay in which the SD1 gene is transcriptionally activated by an ethylene-responsive transcription factor, OsEIL1a
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	gibberellin	Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.	Here, we identify the gibberellin biosynthesis gene, SD1 (SEMIDWARF1), whose loss-of-function allele catapulted the rice Green Revolution, as being responsible for submergence-induced internode elongation
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	Gibberellin	Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.	Here, we identify the gibberellin biosynthesis gene, SD1 (SEMIDWARF1), whose loss-of-function allele catapulted the rice Green Revolution, as being responsible for submergence-induced internode elongation
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	gibberellin biosynthesis	Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.	Here, we identify the gibberellin biosynthesis gene, SD1 (SEMIDWARF1), whose loss-of-function allele catapulted the rice Green Revolution, as being responsible for submergence-induced internode elongation
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	height	High resolution insight into recombination events at the SD1 locus in rice.	Here, physical separation of two defects allows recombination to generate the wild-type SD1 gene, for which plant height can then be used as a reporter
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	plant height	High resolution insight into recombination events at the SD1 locus in rice.	Here, physical separation of two defects allows recombination to generate the wild-type SD1 gene, for which plant height can then be used as a reporter
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	height	Loss of Function of OsFBX267 and OsGA20ox2 in Rice Promotes Early Maturing and Semi-Dwarfism in γ-Irradiated IWP and Genome-Edited Pusa Basmati-1	The loss of function of OsGA20ox2 and OsFBX267 in WP-22-2 resulted in reduced plant height as well as early flowering, and the same has been confirmed by editing OsGA20ox2 in the rice variety Pusa Basmati1 (PB1) using the CRISPR-Cas9 approach
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	height	Loss of Function of OsFBX267 and OsGA20ox2 in Rice Promotes Early Maturing and Semi-Dwarfism in γ-Irradiated IWP and Genome-Edited Pusa Basmati-1	The targeted editing of OsGA20ox2 in PB1 conferred shorter plant height to the edited lines compared with the wild type
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	plant height	Loss of Function of OsFBX267 and OsGA20ox2 in Rice Promotes Early Maturing and Semi-Dwarfism in γ-Irradiated IWP and Genome-Edited Pusa Basmati-1	The loss of function of OsGA20ox2 and OsFBX267 in WP-22-2 resulted in reduced plant height as well as early flowering, and the same has been confirmed by editing OsGA20ox2 in the rice variety Pusa Basmati1 (PB1) using the CRISPR-Cas9 approach
sd1|GA20ox2|OsGA20ox2	Os01g0883800	LOC_Os01g66100	plant height	Loss of Function of OsFBX267 and OsGA20ox2 in Rice Promotes Early Maturing and Semi-Dwarfism in γ-Irradiated IWP and Genome-Edited Pusa Basmati-1	The targeted editing of OsGA20ox2 in PB1 conferred shorter plant height to the edited lines compared with the wild type
SD38	Os10g0472900	LOC_Os10g33370	ethylene	A very-long-chain fatty acid synthesis gene, SD38, influences plant height by activating ethylene biosynthesis in rice.	 Significant changes were observed in the expression of genes involved in ethylene synthesis, which resulted in reduced content of the ethylene precursor 1-aminocyclopropane-1-carboxylic acid (ACC) in the sd38 mutant
SD38	Os10g0472900	LOC_Os10g33370	height	A very-long-chain fatty acid synthesis gene, SD38, influences plant height by activating ethylene biosynthesis in rice.	 Exogenously supplied VLCFA (C24:0) increased the expression levels of OsACS3, OsACS4, and OsACO7 and the plant height of sd38 mutant seedlings, similar to the effect of exogenous application of ACC and ethephon
SD38	Os10g0472900	LOC_Os10g33370	plant height	A very-long-chain fatty acid synthesis gene, SD38, influences plant height by activating ethylene biosynthesis in rice.	 Exogenously supplied VLCFA (C24:0) increased the expression levels of OsACS3, OsACS4, and OsACO7 and the plant height of sd38 mutant seedlings, similar to the effect of exogenous application of ACC and ethephon
SD6	Os06g0164400	LOC_Os06g06900	seed	Antagonistic control of seed dormancy in rice by two bHLH transcription factors.	 SD6 and another bHLH factor inducer of C-repeat binding factors expression 2 (ICE2) function antagonistically in controlling seed dormancy by directly regulating the ABA catabolism gene ABA8OX3, and indirectly regulating the ABA biosynthesis gene NCED2 via OsbHLH048, in a temperature-dependent manner
SD6	Os06g0164400	LOC_Os06g06900	ABA	Antagonistic control of seed dormancy in rice by two bHLH transcription factors.	 SD6 and another bHLH factor inducer of C-repeat binding factors expression 2 (ICE2) function antagonistically in controlling seed dormancy by directly regulating the ABA catabolism gene ABA8OX3, and indirectly regulating the ABA biosynthesis gene NCED2 via OsbHLH048, in a temperature-dependent manner
SD6	Os06g0164400	LOC_Os06g06900	breeding	Antagonistic control of seed dormancy in rice by two bHLH transcription factors.	 Notably, by genome editing SD6 and its wheat homologs, we demonstrated that SD6 is a useful breeding target for alleviating PHS in cereals under field conditions
SD6	Os06g0164400	LOC_Os06g06900	 ABA 	Antagonistic control of seed dormancy in rice by two bHLH transcription factors.	 SD6 and another bHLH factor inducer of C-repeat binding factors expression 2 (ICE2) function antagonistically in controlling seed dormancy by directly regulating the ABA catabolism gene ABA8OX3, and indirectly regulating the ABA biosynthesis gene NCED2 via OsbHLH048, in a temperature-dependent manner
SD6	Os06g0164400	LOC_Os06g06900	ABA biosynthesis	Antagonistic control of seed dormancy in rice by two bHLH transcription factors.	 SD6 and another bHLH factor inducer of C-repeat binding factors expression 2 (ICE2) function antagonistically in controlling seed dormancy by directly regulating the ABA catabolism gene ABA8OX3, and indirectly regulating the ABA biosynthesis gene NCED2 via OsbHLH048, in a temperature-dependent manner
SD6	Os06g0164400	LOC_Os06g06900	dormancy	Antagonistic control of seed dormancy in rice by two bHLH transcription factors.	 SD6 and another bHLH factor inducer of C-repeat binding factors expression 2 (ICE2) function antagonistically in controlling seed dormancy by directly regulating the ABA catabolism gene ABA8OX3, and indirectly regulating the ABA biosynthesis gene NCED2 via OsbHLH048, in a temperature-dependent manner
SD6	Os06g0164400	LOC_Os06g06900	ABA catabolism	Antagonistic control of seed dormancy in rice by two bHLH transcription factors.	 SD6 and another bHLH factor inducer of C-repeat binding factors expression 2 (ICE2) function antagonistically in controlling seed dormancy by directly regulating the ABA catabolism gene ABA8OX3, and indirectly regulating the ABA biosynthesis gene NCED2 via OsbHLH048, in a temperature-dependent manner
SD6	Os06g0164400	LOC_Os06g06900	seed dormancy	Antagonistic control of seed dormancy in rice by two bHLH transcription factors.	 SD6 and another bHLH factor inducer of C-repeat binding factors expression 2 (ICE2) function antagonistically in controlling seed dormancy by directly regulating the ABA catabolism gene ABA8OX3, and indirectly regulating the ABA biosynthesis gene NCED2 via OsbHLH048, in a temperature-dependent manner
SD8	Os08g0564300	LOC_Os08g45030	leaf	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	 Genome-edited SD8 could optimize rice architecture by reducing plant height and flag leaf angle without yield penalty
SD8	Os08g0564300	LOC_Os08g45030	yield	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.
SD8	Os08g0564300	LOC_Os08g45030	yield	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	 Genome-edited SD8 could optimize rice architecture by reducing plant height and flag leaf angle without yield penalty
SD8	Os08g0564300	LOC_Os08g45030	yield	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	 Moreover, SD8 knockouts may even have the potential for increased yield under high density planting in rice
SD8	Os08g0564300	LOC_Os08g45030	architecture	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.
SD8	Os08g0564300	LOC_Os08g45030	architecture	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	 Genome-edited SD8 could optimize rice architecture by reducing plant height and flag leaf angle without yield penalty
SD8	Os08g0564300	LOC_Os08g45030	transporter	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.
SD8	Os08g0564300	LOC_Os08g45030	height	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	 Genome-edited SD8 could optimize rice architecture by reducing plant height and flag leaf angle without yield penalty
SD8	Os08g0564300	LOC_Os08g45030	plant height	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	 Genome-edited SD8 could optimize rice architecture by reducing plant height and flag leaf angle without yield penalty
SD8	Os08g0564300	LOC_Os08g45030	leaf angle	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts have optimized rice architecture without yield penalty.	 Genome-edited SD8 could optimize rice architecture by reducing plant height and flag leaf angle without yield penalty
SDEL1|OsMSRFP	Os12g0538500	LOC_Os12g35320	Pi	Two RING-finger ubiquitin E3 ligases regulate the degradation of SPX4, the internal phosphate sensor, for phosphate homeostasis and signaling in rice.	 Consistent with this biochemical function of SDEL1 and SDEL2, enhancing the expression of SDEL1 and SDEL2 results in Pi over-accumulation and induces Pi-starvation signaling even under Pi-sufficient conditions
SDEL1|OsMSRFP	Os12g0538500	LOC_Os12g35320	Pi	Two RING-finger ubiquitin E3 ligases regulate the degradation of SPX4, the internal phosphate sensor, for phosphate homeostasis and signaling in rice.	 Therefore SDEL1 and SDEL2 facilitate the degradation of SPX4 to modulate PHR2 activity and regulate Pi-homeostasis and Pi-signaling in response to external Pi availability in rice
SDEL1|OsMSRFP	Os12g0538500	LOC_Os12g35320	 pi 	Two RING-finger ubiquitin E3 ligases regulate the degradation of SPX4, the internal phosphate sensor, for phosphate homeostasis and signaling in rice.	 Consistent with this biochemical function of SDEL1 and SDEL2, enhancing the expression of SDEL1 and SDEL2 results in Pi over-accumulation and induces Pi-starvation signaling even under Pi-sufficient conditions
SDEL1|OsMSRFP	Os12g0538500	LOC_Os12g35320	 pi 	Two RING-finger ubiquitin E3 ligases regulate the degradation of SPX4, the internal phosphate sensor, for phosphate homeostasis and signaling in rice.	 Therefore SDEL1 and SDEL2 facilitate the degradation of SPX4 to modulate PHR2 activity and regulate Pi-homeostasis and Pi-signaling in response to external Pi availability in rice
SDEL1|OsMSRFP	Os12g0538500	LOC_Os12g35320	salt	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	 OsMSRFP attenuated OsMYBc-mediated OsHKT1;1 expression, and knockout of OsMSRFP led to rice salt tolerance
SDEL1|OsMSRFP	Os12g0538500	LOC_Os12g35320	tolerance	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	 OsMSRFP attenuated OsMYBc-mediated OsHKT1;1 expression, and knockout of OsMSRFP led to rice salt tolerance
SDEL1|OsMSRFP	Os12g0538500	LOC_Os12g35320	salt tolerance	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	 OsMSRFP attenuated OsMYBc-mediated OsHKT1;1 expression, and knockout of OsMSRFP led to rice salt tolerance
SDG701	Os08g0180100	LOC_Os08g08210	grain	SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.	Overexpression and knockdown experiments showed that SDG701 is crucial for proper sporophytic plant development as well as for gametophytic transmission that directly impacts rice grain production
SDG701	Os08g0180100	LOC_Os08g08210	development	SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.	Overexpression and knockdown experiments showed that SDG701 is crucial for proper sporophytic plant development as well as for gametophytic transmission that directly impacts rice grain production
SDG701	Os08g0180100	LOC_Os08g08210	flowering time	SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.	In-depth analysis of plant flowering time revealed that SDG701 promotes rice flowering under either long-day or short-day photoperiods
SDG701	Os08g0180100	LOC_Os08g08210	methyltransferase	SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.	Collectively, our results establish SDG701 as a major rice H3K4-specific methyltransferase and provide important insights into function of H3K4me3 deposition in transcription activation of florigens in promoting plant flowering
SDG701	Os08g0180100	LOC_Os08g08210	plant development	SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.	Overexpression and knockdown experiments showed that SDG701 is crucial for proper sporophytic plant development as well as for gametophytic transmission that directly impacts rice grain production
SDG705	Os01g0655300	LOC_Os01g46700	development	SDG721 and SDG705 are required for rice growth.	Here, we report that SDG721 (SET-domain group protein 721) and SDG705 are involved in regulating rice development
SDG705	Os01g0655300	LOC_Os01g46700	development	SDG721 and SDG705 are required for rice growth.	Together, these results suggest that SDG721 and SDG705 regulate H3K4 methylation, which is crucial for plant development in rice
SDG705	Os01g0655300	LOC_Os01g46700	plant development	SDG721 and SDG705 are required for rice growth.	Together, these results suggest that SDG721 and SDG705 regulate H3K4 methylation, which is crucial for plant development in rice
SDG705	Os01g0655300	LOC_Os01g46700	panicle	SDG721 and SDG705 are required for rice growth.	Loss of SDG721 and SDG705 function resulted in GA-deficient phenotypes, including semi-dwarfism, reduced cell length, and reduced panicle branching
SDG705	Os01g0655300	LOC_Os01g46700	ga	SDG721 and SDG705 are required for rice growth.	The transcripts levels and H3K4me3 levels of GA biosynthesis genes and GA signaling pathway genes were downregulated in the sdg721 sdg705 plants
SDG705	Os01g0655300	LOC_Os01g46700	branching	SDG721 and SDG705 are required for rice growth.	Loss of SDG721 and SDG705 function resulted in GA-deficient phenotypes, including semi-dwarfism, reduced cell length, and reduced panicle branching
SDG705	Os01g0655300	LOC_Os01g46700	GA	SDG721 and SDG705 are required for rice growth.	The transcripts levels and H3K4me3 levels of GA biosynthesis genes and GA signaling pathway genes were downregulated in the sdg721 sdg705 plants
SDG705	Os01g0655300	LOC_Os01g46700	GA biosynthesis	SDG721 and SDG705 are required for rice growth.	The transcripts levels and H3K4me3 levels of GA biosynthesis genes and GA signaling pathway genes were downregulated in the sdg721 sdg705 plants
SDG708	None	LOC_Os04g34980	growth	SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa).	In fact, knockdown of SDG708 led to misexpression of a set of functional genes and a genome-wide decrease in H3K36me1/2/3 levels during the early growth stages of rice
SDG708	None	LOC_Os04g34980	methyltransferase	SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa).	SDG708 is a methyltransferase that catalyses genome-wide deposition of all three methyl groups on H3K36 and is involved in many biological processes in addition to flowering promotion
SDG714	Os01g0927000	LOC_Os01g70220	culm	SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice	Loss-of-function mutants of SDG714 (SDG714IR transformants) generated by RNA interference display a mostly glabrous phenotype as a result of the lack of macro trichomes in glumes, leaves, and culms compared with control plants
SDG714	Os01g0927000	LOC_Os01g70220	growth	SDG714 regulates specific gene expression and consequently affects plant growth via H3K9 dimethylation	Overexpression of YFP-SDG714 in Arabidopsis significantly inhibits plant growth and this inhibition is associated with an enhanced level of H3K9 dimethylation
SDG714	Os01g0927000	LOC_Os01g70220	growth	SDG714 regulates specific gene expression and consequently affects plant growth via H3K9 dimethylation	Our microarray results show that many genes essential for the plant growth and development were downregulated in transgenic Arabidopsis plants overexpressing YFP-SDG714
SDG714	Os01g0927000	LOC_Os01g70220	growth	SDG714 regulates specific gene expression and consequently affects plant growth via H3K9 dimethylation	Most interestingly, when YFP-SDG714 production is stopped, the inhibited plants can partially restore their growth, suggesting that the perturbation of gene expression caused by YFP-SDG714 is revertible
SDG714	Os01g0927000	LOC_Os01g70220	growth	SDG714 regulates specific gene expression and consequently affects plant growth via H3K9 dimethylation	Taken together, our results point to an important role of SDG714 in H3K9 dimethylation, suppression of gene expression and plant growth, and provide a potential method to regulate gene expression and plant development by an on-off switch of SDG714 expression
SDG714	Os01g0927000	LOC_Os01g70220	growth	SDG714 regulates specific gene expression and consequently affects plant growth via H3K9 dimethylation	SDG714 regulates specific gene expression and consequently affects plant growth via H3K9 dimethylation
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	flowering time	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	Expression analyses of flowering time genes in wild-type and lvp1 mutants revealed that Early heading date1, but not Heading date1, are misregulated in lvp1 mutants
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	flowering time	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	In addition, the double mutant of lvp1 with photoperiod sensitivity5 (se5) flowered later than the se5 single mutant, indicating that lvp1 delays flowering time irrespective of photoperiod
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	vegetative	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	We identified a late-flowering long vegetative phase1 (lvp1) mutant in rice and used map-based cloning to reveal that lvp1 affects the SET domain group protein 724 (SDG724)
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	flower	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	We identified a late-flowering long vegetative phase1 (lvp1) mutant in rice and used map-based cloning to reveal that lvp1 affects the SET domain group protein 724 (SDG724)
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	flower	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	Expression analyses of flowering time genes in wild-type and lvp1 mutants revealed that Early heading date1, but not Heading date1, are misregulated in lvp1 mutants
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	flower	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	In addition, the double mutant of lvp1 with photoperiod sensitivity5 (se5) flowered later than the se5 single mutant, indicating that lvp1 delays flowering time irrespective of photoperiod
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	heading date	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	Expression analyses of flowering time genes in wild-type and lvp1 mutants revealed that Early heading date1, but not Heading date1, are misregulated in lvp1 mutants
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	flower	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice	The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	transcription factor	Crosstalk between the Circadian Clock and Histone Methylation.	 SDG724 encodes a histone H3K36 methyltransferase, and OsLHY is a vital circadian rhythm transcription factor
SDG724|lvp1	Os09g0307800	LOC_Os09g13740	heading date	Crosstalk between the Circadian Clock and Histone Methylation.	 Previously, we reported that SDG724 and OsLHY are two rice heading date regulators in rice
SDG725	Os02g0554000	LOC_Os02g34850	seed	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice	Here, we report that rice SDG725 encodes a H3K36 methyltransferase, and its down-regulation causes wide-ranging defects, including dwarfism, shortened internodes, erect leaves and small seeds
SDG725	Os02g0554000	LOC_Os02g34850	growth	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice	Taken together, our data indicate that SDG725-mediated H3K36 methylation modulates brassinosteroid-related gene expression, playing an important role in rice plant growth and development
SDG725	Os02g0554000	LOC_Os02g34850	erect	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice	Here, we report that rice SDG725 encodes a H3K36 methyltransferase, and its down-regulation causes wide-ranging defects, including dwarfism, shortened internodes, erect leaves and small seeds
SDG725	Os02g0554000	LOC_Os02g34850	dwarf	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice	Here, we report that rice SDG725 encodes a H3K36 methyltransferase, and its down-regulation causes wide-ranging defects, including dwarfism, shortened internodes, erect leaves and small seeds
SDG725	Os02g0554000	LOC_Os02g34850	brassinosteroid	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice	Consistently, transcriptome analyses revealed that SDG725 depletion results in down-regulation by more than two-fold of over 1000 genes, including D11, BRI1 and BU1, which are known to be involved in brassinosteroid biosynthesis or signaling pathways
SDG725	Os02g0554000	LOC_Os02g34850	brassinosteroid	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice	Chromatin immunoprecipitation analyses showed that levels of H3K36me2/3 are reduced in chromatin at some regions of these brassinosteroid-related genes in SDG725 knockdown plants, and that SDG725 protein is able to directly bind to these target genes
SDG725	Os02g0554000	LOC_Os02g34850	brassinosteroid	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice	Taken together, our data indicate that SDG725-mediated H3K36 methylation modulates brassinosteroid-related gene expression, playing an important role in rice plant growth and development
SDG736|OsSET9	Os02g0611300	LOC_Os02g39800|LOC_Os02g39810	leaf	Genome-wide identification, phylogenetic and co-expression analysis of OsSET gene family in rice	OsSET9 are highly expressed in the later stage of endosperm (21 days after pollination), whereas the expression of OsSET19 enriched in young leaf and decreased in endosperm.
Sdr4	Os07g0585700	LOC_Os07g39700	dormancy	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	We cloned a rice quantitative trait locus, Sdr4, which contributes substantially to differences in seed dormancy between japonica (Nipponbare) and indica (Kasalath) cultivars
Sdr4	Os07g0585700	LOC_Os07g39700	dormancy	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Sdr4 expression is positively regulated by OsVP1, a global regulator of seed maturation, and in turn positively regulates potential regulators of seed dormancy and represses the expression of postgerminative genes, suggesting that Sdr4 acts as an intermediate regulator of dormancy in the seed maturation program
Sdr4	Os07g0585700	LOC_Os07g39700	dormancy	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Japonica cultivars have only the Nipponbare allele (Sdr4-n), which endows reduced dormancy, whereas both the Kasalath allele (Srd4-k) and Sdr4-n are widely distributed in the indica group, indicating prevalent introgression
Sdr4	Os07g0585700	LOC_Os07g39700	dormancy	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice
Sdr4	Os07g0585700	LOC_Os07g39700	domestication	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice
Sdr4	Os07g0585700	LOC_Os07g39700	seed	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	We cloned a rice quantitative trait locus, Sdr4, which contributes substantially to differences in seed dormancy between japonica (Nipponbare) and indica (Kasalath) cultivars
Sdr4	Os07g0585700	LOC_Os07g39700	seed	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Sdr4 expression is positively regulated by OsVP1, a global regulator of seed maturation, and in turn positively regulates potential regulators of seed dormancy and represses the expression of postgerminative genes, suggesting that Sdr4 acts as an intermediate regulator of dormancy in the seed maturation program
Sdr4	Os07g0585700	LOC_Os07g39700	seed	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice
Sdr4	Os07g0585700	LOC_Os07g39700	domestication	Sdr4 dominates pre-harvest sprouting and facilitates adaptation to local climatic condition in Asia cultivated rice.	 Furthermore, like the semi-dwarf 1 (SD1) and Rc loci, Sdr4 underwent selection during the domestication and improvement of Asian cultivated rice
Sdr4	Os07g0585700	LOC_Os07g39700	quality	Sdr4 dominates pre-harvest sprouting and facilitates adaptation to local climatic condition in Asia cultivated rice.	 Moreover, these findings provide guidance for utilizing the favorable alleles of Sdr4 and Rc to synergistically boost PHS resistance, yield, and quality in modern rice varieties
SDRP	Os03g0102200	LOC_Os03g01230	transcription factor	The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding	Finally, yeast two-hybrid screening results showed that Bphi008a is able to interact with a b-ZIP transcription factor (OsbZIP60) and a RNA polymerase polypeptide (SDRP)
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	flower	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	flower	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Because rice and Arabidopsis, respectively, are members of monocots and eudicots, two largest groups of flowering plants, our results suggest that the functions of SDS and RCK are likely conserved in flowering plants
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	fertility	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	sterile	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	vegetative	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	meiosis	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	The Arabidopsis SDS (SOLO DANCERS) and RCK (ROCK-N-ROLLERS) genes are important for male meiosis, but it is still unknown whether they represent conserved functions in plants
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	meiosis	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	pollen	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Quantitative real-time RT-PCR analysis indicated that rice SDS and RCK are expressed preferentially in young flowers, and transgenic RNAi rice lines with reduced expression of these genes exhibited normal vegetative development, but showed significantly reduced fertility with partially sterile flowers and defective pollens
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	pollen	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	SDS deficiency also caused a decrease in pollen amounts
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	meiotic	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Further cytological examination of male meiocytes revealed that the SDS deficiency led to defects in homolog interaction and bivalent formation in meiotic prophase I, and RCK deficiency resulted in defective meiotic crossover formation
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	meiotic	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	growth	OsSDS is essential for DSB formation in rice meiosis.	The Ossds mutant is normal in vegetative growth but both male and female gametes are inviable
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	vegetative	OsSDS is essential for DSB formation in rice meiosis.	The Ossds mutant is normal in vegetative growth but both male and female gametes are inviable
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	meiotic	OsSDS is essential for DSB formation in rice meiosis.	No γH2AX immunosignals in Ossds meiocytes together with the suppression of chromosome fragmentation in Ossds-1 Osrad51c, both provide strong evidences that OsSDS is essential for meiotic DSB formation
SDS|OsSDS	Os03g0225200	LOC_Os03g12414	meiotic	OsSDS is essential for DSB formation in rice meiosis.	Immunostaining investigations revealed that meiotic chromosome axes are normally formed but both SC installation and localization of recombination elements are failed in Ossds
SDS2	Os01g0783800	LOC_Os01g57480	resistance	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	Conversely, SDS2 over-expression induces constitutive PCD accompanied by elevated immune responses and enhanced resistance to M
SDS2	Os01g0783800	LOC_Os01g57480	blast	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	An sds2 mutant shows reduced immune responses and enhanced susceptibility to the blast fungus Magnaporthe oryzae
SDS2	Os01g0783800	LOC_Os01g57480	magnaporthe oryzae	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	An sds2 mutant shows reduced immune responses and enhanced susceptibility to the blast fungus Magnaporthe oryzae
SDS2	Os01g0783800	LOC_Os01g57480	cell death	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.
SDS2	Os01g0783800	LOC_Os01g57480	immunity	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.
SDS2	Os01g0783800	LOC_Os01g57480	immunity	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	In addition, SDS2 interacts with related receptor-like cytoplasmic kinases, OsRLCK118/176, that positively regulate immunity by phosphorylating the NADPH oxidase OsRbohB to stimulate ROS production
SDS2	Os01g0783800	LOC_Os01g57480	immune response	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	An sds2 mutant shows reduced immune responses and enhanced susceptibility to the blast fungus Magnaporthe oryzae
SDS2	Os01g0783800	LOC_Os01g57480	immune response	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	Conversely, SDS2 over-expression induces constitutive PCD accompanied by elevated immune responses and enhanced resistance to M
SDS2	Os01g0783800	LOC_Os01g57480	Kinase	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.
SDS2	Os01g0783800	LOC_Os01g57480	PCD	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	Conversely, SDS2 over-expression induces constitutive PCD accompanied by elevated immune responses and enhanced resistance to M
SDT	Os06g0649600	LOC_Os06g44034	panicle	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	We also show that combining the sdt allele with the OsSPL14WFP allele can be effective in simultaneously improving tillering capacity and panicle branching, thereby leading to higher harvest index and grain yield
SDT	Os06g0649600	LOC_Os06g44034	grain	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	The plants carrying the semidominant sdt allele exhibit reduced plant height, enhanced lodging resistance, increased tiller numbers per plant, and resulting in an increased grain yield
SDT	Os06g0649600	LOC_Os06g44034	grain	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	We also show that combining the sdt allele with the OsSPL14WFP allele can be effective in simultaneously improving tillering capacity and panicle branching, thereby leading to higher harvest index and grain yield
SDT	Os06g0649600	LOC_Os06g44034	grain	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	Most importantly, pyramiding of the sdt allele and the green revolution gene sd1 enhances grain yield by about 20% in hybrid rice breeding
SDT	Os06g0649600	LOC_Os06g44034	tiller	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	The plants carrying the semidominant sdt allele exhibit reduced plant height, enhanced lodging resistance, increased tiller numbers per plant, and resulting in an increased grain yield
SDT	Os06g0649600	LOC_Os06g44034	grain yield	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	The plants carrying the semidominant sdt allele exhibit reduced plant height, enhanced lodging resistance, increased tiller numbers per plant, and resulting in an increased grain yield
SDT	Os06g0649600	LOC_Os06g44034	grain yield	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	We also show that combining the sdt allele with the OsSPL14WFP allele can be effective in simultaneously improving tillering capacity and panicle branching, thereby leading to higher harvest index and grain yield
SDT	Os06g0649600	LOC_Os06g44034	grain yield	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	Most importantly, pyramiding of the sdt allele and the green revolution gene sd1 enhances grain yield by about 20% in hybrid rice breeding
SDT	Os06g0649600	LOC_Os06g44034	yield	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	The plants carrying the semidominant sdt allele exhibit reduced plant height, enhanced lodging resistance, increased tiller numbers per plant, and resulting in an increased grain yield
SDT	Os06g0649600	LOC_Os06g44034	yield	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	We also show that combining the sdt allele with the OsSPL14WFP allele can be effective in simultaneously improving tillering capacity and panicle branching, thereby leading to higher harvest index and grain yield
SDT	Os06g0649600	LOC_Os06g44034	yield	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	Most importantly, pyramiding of the sdt allele and the green revolution gene sd1 enhances grain yield by about 20% in hybrid rice breeding
SDT	Os06g0649600	LOC_Os06g44034	breeding	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	Most importantly, pyramiding of the sdt allele and the green revolution gene sd1 enhances grain yield by about 20% in hybrid rice breeding
SDT	Os06g0649600	LOC_Os06g44034	plant height	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	The plants carrying the semidominant sdt allele exhibit reduced plant height, enhanced lodging resistance, increased tiller numbers per plant, and resulting in an increased grain yield
SDT	Os06g0649600	LOC_Os06g44034	tillering	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	We also show that combining the sdt allele with the OsSPL14WFP allele can be effective in simultaneously improving tillering capacity and panicle branching, thereby leading to higher harvest index and grain yield
SDT	Os06g0649600	LOC_Os06g44034	tiller number	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	The plants carrying the semidominant sdt allele exhibit reduced plant height, enhanced lodging resistance, increased tiller numbers per plant, and resulting in an increased grain yield
SDT	Os06g0649600	LOC_Os06g44034	lodging	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	The plants carrying the semidominant sdt allele exhibit reduced plant height, enhanced lodging resistance, increased tiller numbers per plant, and resulting in an increased grain yield
SDT	Os06g0649600	LOC_Os06g44034	lodging resistance	Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice.	The plants carrying the semidominant sdt allele exhibit reduced plant height, enhanced lodging resistance, increased tiller numbers per plant, and resulting in an increased grain yield
Sdt97	Os06g0649800	LOC_Os06g44050	growth	Sdt97, a Point Mutation in 5' Untranslated Region, Confers Semi-dwarfism in Rice.	Sequence of the candidate genes in the target region revealed that a base transversion from G to C occurred in the 5' untranslated region of Sdt97 qRT-PCR results confirmed that the transversion induced obvious change in the expression pattern of Sdt97 at different growth and developmental stages
Sdt97	Os06g0649800	LOC_Os06g44050	dwarf	Sdt97, a Point Mutation in 5' Untranslated Region, Confers Semi-dwarfism in Rice.	A semi- dwarf mutant gene Sdt97 was previously described
Se14	Os03g0151300	LOC_Os03g05680	floral	Se14, encoding a JmjC domain-containing protein, plays key roles in long-day suppression of rice flowering through the demethylation of H3K4me3 of RFT1.	We conclude that Se14 is a novel photoperiod-sensitivity gene that has a suppressive effect on floral transition (flowering time) under long day-length conditions through the modification of chromatin structure by H3K4me3 demethylation in the promoter region of RFT1
Se14	Os03g0151300	LOC_Os03g05680	flowering time	Se14, encoding a JmjC domain-containing protein, plays key roles in long-day suppression of rice flowering through the demethylation of H3K4me3 of RFT1.	We conclude that Se14 is a novel photoperiod-sensitivity gene that has a suppressive effect on floral transition (flowering time) under long day-length conditions through the modification of chromatin structure by H3K4me3 demethylation in the promoter region of RFT1
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	breeding	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Alleviation of seed germination inhibition, chlorophyll loss and ROS overproduction, as well as the induction of antioxidant defense were further observed when SE5 or HY1 was overexpressed in transgenic Arabidopsis plants, indicating that SE5 may be useful for molecular breeding designed to improve plant tolerance to oxidative stress
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	flower	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice	Here, we show that the s73 mutant, identified in a gamma-irradiated Bahia collection, displays early flowering and photoperiodic insensitivity due to a null mutation in the PHOTOPERIOD SENSITIVITY5 (SE5) gene, which encodes an enzyme implicated in phytochrome chromophore biosynthesis
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	seedling	A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice	Normal grown ygl2 seedlings showed yellow-green leaves with reduced contents of Chl and tetrapyrrole intermediates whereas an increase of Chl a/b ratio
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	seedling	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Compared with wild-type, SE5 RNAi transgenic plants aggravated seedling growth inhibition, chlorophyll loss and ROS overproduction, and decreased the transcripts of some representative antioxidative genes
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	growth	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Compared with wild-type, SE5 RNAi transgenic plants aggravated seedling growth inhibition, chlorophyll loss and ROS overproduction, and decreased the transcripts of some representative antioxidative genes
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	seed germination	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Alleviation of seed germination inhibition, chlorophyll loss and ROS overproduction, as well as the induction of antioxidant defense were further observed when SE5 or HY1 was overexpressed in transgenic Arabidopsis plants, indicating that SE5 may be useful for molecular breeding designed to improve plant tolerance to oxidative stress
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	floral	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice	Early heading date1 (Ehd1), an additional rice floral activator, was also highly expressed in the s73 mutant, suggesting that SE5 represses Ehd1 in wild-type plants
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	oxidative	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	The herbicide methyl viologen (MV), which produces reactive oxygen species (ROS), was applied to determine whether SE5 regulates oxidative stress response
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	oxidative	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Compared with wild-type, SE5 RNAi transgenic plants aggravated seedling growth inhibition, chlorophyll loss and ROS overproduction, and decreased the transcripts of some representative antioxidative genes
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	oxidative	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Alleviation of seed germination inhibition, chlorophyll loss and ROS overproduction, as well as the induction of antioxidant defense were further observed when SE5 or HY1 was overexpressed in transgenic Arabidopsis plants, indicating that SE5 may be useful for molecular breeding designed to improve plant tolerance to oxidative stress
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	photosynthesis	A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice	In addition, we found expression levels of some genes associated with Chl biosynthesis and photosynthesis were concurrently altered in ygl2 mutant
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	flower	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Rice RNAi mutants silenced for SE5 were generated and displayed early flowering under long-day conditions, consistent with phenotypes of the null mutation in SE5 gene reported previously (se5 and s73)
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	defense	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Alleviation of seed germination inhibition, chlorophyll loss and ROS overproduction, as well as the induction of antioxidant defense were further observed when SE5 or HY1 was overexpressed in transgenic Arabidopsis plants, indicating that SE5 may be useful for molecular breeding designed to improve plant tolerance to oxidative stress
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	defense	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	temperature	A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice	YGL2 was constitutively expressed in a variety of rice tissues with the highest levels in leaves and regulated by temperature
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	chloroplast	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Here, we identified that the rice PHOTOPERIOD SENSITIVITY 5 (SE5) gene, which encoded a putative HO with high similarity to HO-1 from Arabidopsis (HY1), exhibited HO activity, and localized in the chloroplasts
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	heading date	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice	Early heading date1 (Ehd1), an additional rice floral activator, was also highly expressed in the s73 mutant, suggesting that SE5 represses Ehd1 in wild-type plants
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	leaf	A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice	In this study, we isolated a rice mutant named yellow-green leaf 2 (ygl2) from a (60)Co-irradiated population
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	seed	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Compared with wild-type, SE5 RNAi transgenic plants aggravated seedling growth inhibition, chlorophyll loss and ROS overproduction, and decreased the transcripts of some representative antioxidative genes
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	seed	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense	Alleviation of seed germination inhibition, chlorophyll loss and ROS overproduction, as well as the induction of antioxidant defense were further observed when SE5 or HY1 was overexpressed in transgenic Arabidopsis plants, indicating that SE5 may be useful for molecular breeding designed to improve plant tolerance to oxidative stress
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	chloroplast	A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice	Ultrastructural analyses demonstrated grana were poorly stacked in ygl2 mutant, resulting in underdevelopment of chloroplasts
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	flower	Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant)	The photoperiodic sensitivity 5 (se5) mutant of rice, a short-day plant, has a very early flowering phenotype and is completely deficient in photoperiodic response
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	flower	Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant)	Comparison of se5 with hy1, a counterpart mutant of Arabidopsis, suggests distinct roles of phytochromes in the photoperiodic control of flowering in these two species
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	leaf	Map-Based Cloning and Functional Analysis of YE1 in Rice, Which Is Involved in Light-Dependent Chlorophyll Biogenesis and Photoperiodic Flowering Pathway.	Here, we identified a rice mutant, yellow leaf and early flowering (ye1), and characterized the gene YE1 by using a map-based cloning method
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	seedlings	Map-Based Cloning and Functional Analysis of YE1 in Rice, Which Is Involved in Light-Dependent Chlorophyll Biogenesis and Photoperiodic Flowering Pathway.	Furthermore, the expression levels of Chl biosynthetic genes were downregulated in ye1 seedlings during de-etiolation responses to light
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	map-based cloning	Map-Based Cloning and Functional Analysis of YE1 in Rice, Which Is Involved in Light-Dependent Chlorophyll Biogenesis and Photoperiodic Flowering Pathway.	Map-Based Cloning and Functional Analysis of YE1 in Rice, Which Is Involved in Light-Dependent Chlorophyll Biogenesis and Photoperiodic Flowering Pathway.
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	map-based cloning	Map-Based Cloning and Functional Analysis of YE1 in Rice, Which Is Involved in Light-Dependent Chlorophyll Biogenesis and Photoperiodic Flowering Pathway.	Here, we identified a rice mutant, yellow leaf and early flowering (ye1), and characterized the gene YE1 by using a map-based cloning method
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	chlorophyll biogenesis	Map-Based Cloning and Functional Analysis of YE1 in Rice, Which Is Involved in Light-Dependent Chlorophyll Biogenesis and Photoperiodic Flowering Pathway.	Map-Based Cloning and Functional Analysis of YE1 in Rice, Which Is Involved in Light-Dependent Chlorophyll Biogenesis and Photoperiodic Flowering Pathway.
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	leaf	PE-1, Encoding Heme Oxygenase 1, Impacts Heading Date and Chloroplast Development in Rice ( Oryza sativa L.).	Expression pattern analysis indicated that PE-1 was mainly expressed in roots, stems, leaves, leaf sheaths, and young panicles
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	chloroplast	PE-1, Encoding Heme Oxygenase 1, Impacts Heading Date and Chloroplast Development in Rice ( Oryza sativa L.).	Furthermore, the chloroplasts of pe-1 were filled with many large-sized starch grains, and the number of osmiophilic granules (a chloroplast lipid reservoir) was significantly decreased
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	pollen	PE-1, Encoding Heme Oxygenase 1, Impacts Heading Date and Chloroplast Development in Rice ( Oryza sativa L.).	The pe-1 plant is accompanied by a decreased chlorophyll content, an enhanced photosynthesis, and a decreased pollen fertility
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	starch	PE-1, Encoding Heme Oxygenase 1, Impacts Heading Date and Chloroplast Development in Rice ( Oryza sativa L.).	Furthermore, the chloroplasts of pe-1 were filled with many large-sized starch grains, and the number of osmiophilic granules (a chloroplast lipid reservoir) was significantly decreased
Se5|OsHY1|OsHO1|YGL2|YE1|PE-1	Os06g0603000	LOC_Os06g40080	fertility	PE-1, Encoding Heme Oxygenase 1, Impacts Heading Date and Chloroplast Development in Rice ( Oryza sativa L.).	The pe-1 plant is accompanied by a decreased chlorophyll content, an enhanced photosynthesis, and a decreased pollen fertility
SEM1	Os01g0533000	LOC_Os01g34880|LOC_Os01g34890	map-based cloning	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues.	 Map-based cloning identified two allelic mutations in a gene encoding a GLUCAN SYNTHASE-LIKE (GSL) protein, thus indicating a role for SEM1 in callose biosynthesis
SEM1	Os01g0533000	LOC_Os01g34880|LOC_Os01g34890	phloem	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues.	 In situ expression analysis and GUS staining showed that SEM1 was mainly expressed in vascular phloem cells
SEM1	Os01g0533000	LOC_Os01g34880|LOC_Os01g34890	sugar	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues.	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues.
SEM1	Os01g0533000	LOC_Os01g34880|LOC_Os01g34890	plasma membrane	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues.	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues.
SEM1	Os01g0533000	LOC_Os01g34880|LOC_Os01g34890	plasma membrane	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues.	 Subcellular localization in rice showed that SEM1 localized to the plasma membrane
SEM1	Os01g0533000	LOC_Os01g34880|LOC_Os01g34890	callose biosynthesis	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues	Map-based cloning identified two allelic mutations in a gene encoding a GLUCAN SYNTHASE-LIKE (GSL) protein, thus indicating a role for SEM1 in callose biosynthesis.
SEM1	Os01g0533000	LOC_Os01g34880|LOC_Os01g34890	starch accumulation	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues	Reduced sucrose transport was found in the sem1-1/1-2 mutant, which led to excessive starch accumulation in source leaves and inhibited photosynthesis.
SEM1	Os01g0533000	LOC_Os01g34880|LOC_Os01g34890	sucrose transport	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues	Reduced sucrose transport was found in the sem1-1/1-2 mutant, which led to excessive starch accumulation in source leaves and inhibited photosynthesis.
SEM1	Os01g0533000	LOC_Os01g34880|LOC_Os01g34890	photosynthesis	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues	Reduced sucrose transport was found in the sem1-1/1-2 mutant, which led to excessive starch accumulation in source leaves and inhibited photosynthesis.
SERF1	Os05g0420300	LOC_Os05g34730	salt	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Here, we characterize the role of the rice transcription factor (TF) SALT-RESPONSIVE ERF1 (SERF1) during grain development
SERF1	Os05g0420300	LOC_Os05g34730	starch biosynthesis	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Consistently, during grain filling, starch biosynthesis genes such as GRANULE-BOUND STARCH SYNTHASEI (GBSSI), STARCH SYNTHASEI (SSI), SSIIIa, and ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT2 (AGPL2) are up-regulated in SERF1 knockout grains
SERF1	Os05g0420300	LOC_Os05g34730	salinity	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	In agreement, plants deficient for SERF1 are more sensitive to salt stress compared with the wild type, while constitutive overexpression of SERF1 improves salinity tolerance
SERF1	Os05g0420300	LOC_Os05g34730	root	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	Here, we identified salt-responsive ERF1 (SERF1), a rice (Oryza sativa) transcription factor (TF) gene that shows a root-specific induction upon salt and hydrogen peroxide (H2O2) treatment
SERF1	Os05g0420300	LOC_Os05g34730	salt tolerance	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	Loss of SERF1 impairs the salt-inducible expression of genes encoding members of a mitogen-activated protein kinase (MAPK) cascade and salt tolerance-mediating TFs
SERF1	Os05g0420300	LOC_Os05g34730	salt tolerance	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	We propose that SERF1 amplifies the reactive oxygen species-activated MAPK cascade signal during the initial phase of salt stress and translates the salt-induced signal into an appropriate expressional response resulting in salt tolerance
SERF1	Os05g0420300	LOC_Os05g34730	salt	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	Here, we identified salt-responsive ERF1 (SERF1), a rice (Oryza sativa) transcription factor (TF) gene that shows a root-specific induction upon salt and hydrogen peroxide (H2O2) treatment
SERF1	Os05g0420300	LOC_Os05g34730	salt	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	Loss of SERF1 impairs the salt-inducible expression of genes encoding members of a mitogen-activated protein kinase (MAPK) cascade and salt tolerance-mediating TFs
SERF1	Os05g0420300	LOC_Os05g34730	salt	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	In agreement, plants deficient for SERF1 are more sensitive to salt stress compared with the wild type, while constitutive overexpression of SERF1 improves salinity tolerance
SERF1	Os05g0420300	LOC_Os05g34730	salt	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	We propose that SERF1 amplifies the reactive oxygen species-activated MAPK cascade signal during the initial phase of salt stress and translates the salt-induced signal into an appropriate expressional response resulting in salt tolerance
SERF1	Os05g0420300	LOC_Os05g34730	salt stress	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	In agreement, plants deficient for SERF1 are more sensitive to salt stress compared with the wild type, while constitutive overexpression of SERF1 improves salinity tolerance
SERF1	Os05g0420300	LOC_Os05g34730	salt stress	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	We propose that SERF1 amplifies the reactive oxygen species-activated MAPK cascade signal during the initial phase of salt stress and translates the salt-induced signal into an appropriate expressional response resulting in salt tolerance
SERF1	Os05g0420300	LOC_Os05g34730	grain filling	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Through genome-wide expression profiling and chromatin immunoprecipitation, we found that SERF1 directly regulates RICE PROLAMIN-BOX BINDING FACTOR (RPBF), a TF that functions as a positive regulator of grain filling
SERF1	Os05g0420300	LOC_Os05g34730	grain filling	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Consistently, during grain filling, starch biosynthesis genes such as GRANULE-BOUND STARCH SYNTHASEI (GBSSI), STARCH SYNTHASEI (SSI), SSIIIa, and ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT2 (AGPL2) are up-regulated in SERF1 knockout grains
SERF1	Os05g0420300	LOC_Os05g34730	grain filling	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Our study reveals that SERF1 represents a negative regulator of grain filling and seedling establishment by timing the expression of RPBF
SERF1	Os05g0420300	LOC_Os05g34730	seedling	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Loss of SERF1 results in more rapid seedling establishment, while SERF1 overexpression has the opposite effect
SERF1	Os05g0420300	LOC_Os05g34730	seedling	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Our study reveals that SERF1 represents a negative regulator of grain filling and seedling establishment by timing the expression of RPBF
SERF1	Os05g0420300	LOC_Os05g34730	grain	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Here, we characterize the role of the rice transcription factor (TF) SALT-RESPONSIVE ERF1 (SERF1) during grain development
SERF1	Os05g0420300	LOC_Os05g34730	grain	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Through genome-wide expression profiling and chromatin immunoprecipitation, we found that SERF1 directly regulates RICE PROLAMIN-BOX BINDING FACTOR (RPBF), a TF that functions as a positive regulator of grain filling
SERF1	Os05g0420300	LOC_Os05g34730	grain	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Loss of SERF1 enhances RPBF expression resulting in larger grains with increased starch content, while SERF1 overexpression represses RPBF resulting in smaller grains
SERF1	Os05g0420300	LOC_Os05g34730	grain	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Consistently, during grain filling, starch biosynthesis genes such as GRANULE-BOUND STARCH SYNTHASEI (GBSSI), STARCH SYNTHASEI (SSI), SSIIIa, and ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT2 (AGPL2) are up-regulated in SERF1 knockout grains
SERF1	Os05g0420300	LOC_Os05g34730	grain	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Our study reveals that SERF1 represents a negative regulator of grain filling and seedling establishment by timing the expression of RPBF
SERF1	Os05g0420300	LOC_Os05g34730	transcription factor	Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice	Here, we identified salt-responsive ERF1 (SERF1), a rice (Oryza sativa) transcription factor (TF) gene that shows a root-specific induction upon salt and hydrogen peroxide (H2O2) treatment
SERF1	Os05g0420300	LOC_Os05g34730	transcription factor	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Here, we characterize the role of the rice transcription factor (TF) SALT-RESPONSIVE ERF1 (SERF1) during grain development
SERF1	Os05g0420300	LOC_Os05g34730	starch	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Loss of SERF1 enhances RPBF expression resulting in larger grains with increased starch content, while SERF1 overexpression represses RPBF resulting in smaller grains
SERF1	Os05g0420300	LOC_Os05g34730	starch	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice	Consistently, during grain filling, starch biosynthesis genes such as GRANULE-BOUND STARCH SYNTHASEI (GBSSI), STARCH SYNTHASEI (SSI), SSIIIa, and ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT2 (AGPL2) are up-regulated in SERF1 knockout grains
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	resistance	Four tyrosine residues of the rice immune receptor XA21 are not required for interaction with the co-receptor OsSERK2 or resistance to Xanthomonas oryzae pv. oryzae.	Four tyrosine residues of the rice immune receptor XA21 are not required for interaction with the co-receptor OsSERK2 or resistance to Xanthomonas oryzae pv. oryzae.
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	resistance	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	grain	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	We generated multiple mutant alleles of SERK2 by CRISPR/Cas9 editing and show that knockout of SERK2 results in a compact structure accompanied with increased grain size
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	grain	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Furthermore, while salt suppresses SERK2 transcription, the protein is greatly induced by salt stress
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	grain size	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	We generated multiple mutant alleles of SERK2 by CRISPR/Cas9 editing and show that knockout of SERK2 results in a compact structure accompanied with increased grain size
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	grain size	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt stress	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt stress	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Furthermore, while salt suppresses SERK2 transcription, the protein is greatly induced by salt stress
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	stress	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	stress	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Furthermore, while salt suppresses SERK2 transcription, the protein is greatly induced by salt stress
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	architecture	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	brassinosteroid	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Here, we show that SERK2 as a BR signaling component is a potentially useful candidate for BR manipulation in rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	SERK2 is localized on plasma membrane and can interact with OsBRI1, the BR receptor, suggesting its conserved role as co-receptor in BR signaling
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Taken together, we propose that the adverse condition induces SERK2 accumulation to enhance early BR signaling on plasma membrane in favor of the anti-stress response
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Our results illustrate the great potentials of specific BR components such as SERK2 for crop improvement by utilizing flexible strategies
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	Brassinosteroid	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR signaling	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Here, we show that SERK2 as a BR signaling component is a potentially useful candidate for BR manipulation in rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR signaling	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	SERK2 is localized on plasma membrane and can interact with OsBRI1, the BR receptor, suggesting its conserved role as co-receptor in BR signaling
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR signaling	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Taken together, we propose that the adverse condition induces SERK2 accumulation to enhance early BR signaling on plasma membrane in favor of the anti-stress response
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	plasma membrane	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	SERK2 is localized on plasma membrane and can interact with OsBRI1, the BR receptor, suggesting its conserved role as co-receptor in BR signaling
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	plasma membrane	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Taken together, we propose that the adverse condition induces SERK2 accumulation to enhance early BR signaling on plasma membrane in favor of the anti-stress response
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	Brassinosteroid Signaling	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	plant architecture	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	stress response	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Taken together, we propose that the adverse condition induces SERK2 accumulation to enhance early BR signaling on plasma membrane in favor of the anti-stress response
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	resistance	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	grain	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	We generated multiple mutant alleles of SERK2 by CRISPR/Cas9 editing and show that knockout of SERK2 results in a compact structure accompanied with increased grain size
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	grain	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Furthermore, while salt suppresses SERK2 transcription, the protein is greatly induced by salt stress
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	grain size	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	We generated multiple mutant alleles of SERK2 by CRISPR/Cas9 editing and show that knockout of SERK2 results in a compact structure accompanied with increased grain size
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	grain size	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt stress	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	salt stress	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Furthermore, while salt suppresses SERK2 transcription, the protein is greatly induced by salt stress
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	stress	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	stress	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Furthermore, while salt suppresses SERK2 transcription, the protein is greatly induced by salt stress
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	architecture	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	brassinosteroid	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Here, we show that SERK2 as a BR signaling component is a potentially useful candidate for BR manipulation in rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	SERK2 is localized on plasma membrane and can interact with OsBRI1, the BR receptor, suggesting its conserved role as co-receptor in BR signaling
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Taken together, we propose that the adverse condition induces SERK2 accumulation to enhance early BR signaling on plasma membrane in favor of the anti-stress response
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Our results illustrate the great potentials of specific BR components such as SERK2 for crop improvement by utilizing flexible strategies
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	Brassinosteroid	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR signaling	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Here, we show that SERK2 as a BR signaling component is a potentially useful candidate for BR manipulation in rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR signaling	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	SERK2 is localized on plasma membrane and can interact with OsBRI1, the BR receptor, suggesting its conserved role as co-receptor in BR signaling
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	BR signaling	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Taken together, we propose that the adverse condition induces SERK2 accumulation to enhance early BR signaling on plasma membrane in favor of the anti-stress response
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	plasma membrane	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	SERK2 is localized on plasma membrane and can interact with OsBRI1, the BR receptor, suggesting its conserved role as co-receptor in BR signaling
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	plasma membrane	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Taken together, we propose that the adverse condition induces SERK2 accumulation to enhance early BR signaling on plasma membrane in favor of the anti-stress response
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	Brassinosteroid Signaling	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	plant architecture	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	By contrast, overexpression of SERK2 significantly enhances grain size and salt stress resistance, importantly, without affecting plant architecture
SERK2|OsSERK2	Os04g0457800	LOC_Os04g38480	stress response	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice	Taken together, we propose that the adverse condition induces SERK2 accumulation to enhance early BR signaling on plasma membrane in favor of the anti-stress response
SG1	Os09g0459200	LOC_Os09g28520	BR	Short grain1 decreases organ elongation and brassinosteroid response in rice	However, the endogenous BR level in the SG1 overexpressor (SG1:OX) plants was comparable to the wild type
SG1	Os09g0459200	LOC_Os09g28520	brassinosteroid	Short grain1 decreases organ elongation and brassinosteroid response in rice	Overexpression of SG1 in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves
SG1	Os09g0459200	LOC_Os09g28520	seed	Short grain1 decreases organ elongation and brassinosteroid response in rice	Taken together, these results suggest that SG1 decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation
SG1	Os09g0459200	LOC_Os09g28520	dwarf	Short grain1 decreases organ elongation and brassinosteroid response in rice	Overexpression of SG1 in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves
SG1	Os09g0459200	LOC_Os09g28520	panicle	Short grain1 decreases organ elongation and brassinosteroid response in rice	The causative gene, SG1, encodes a protein with unknown function that is preferentially expressed in roots and developing panicles
SG1	Os09g0459200	LOC_Os09g28520	lamina	Short grain1 decreases organ elongation and brassinosteroid response in rice	SG1:OX plants were insensitive to brassinolide in the lamina inclination assay
SG1	Os09g0459200	LOC_Os09g28520	root	Short grain1 decreases organ elongation and brassinosteroid response in rice	The causative gene, SG1, encodes a protein with unknown function that is preferentially expressed in roots and developing panicles
SG1	Os09g0459200	LOC_Os09g28520	erect	Short grain1 decreases organ elongation and brassinosteroid response in rice	Overexpression of SG1 in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves
SG1	Os09g0459200	LOC_Os09g28520	cellular proliferation	Short grain1 decreases organ elongation and brassinosteroid response in rice	Taken together, these results suggest that SG1 decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation
SG1	Os09g0459200	LOC_Os09g28520	grain	Short grain1 decreases organ elongation and brassinosteroid response in rice	We identified a short-grain mutant (Short grain1 (Sg1) Dominant) via phenotypic screening of 13,000 rice (Oryza sativa) activation-tagged lines
SG1	Os09g0459200	LOC_Os09g28520	grain	Short grain1 decreases organ elongation and brassinosteroid response in rice	Overexpression of SG1 in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves
SG1	Os09g0459200	LOC_Os09g28520	grain	Short grain1 decreases organ elongation and brassinosteroid response in rice	In contrast to the SG1:OX plants, RNA interference knockdown plants that down-regulated SG1 and a related gene, SG1-LIKE PROTEIN1, had longer grains and internodes in rachis branches than in the wild type
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	leaf	Small Grain and Dwarf 2, encoding an HD-Zip II family transcription factor, regulates plant development by modulating gibberellin biosynthesis in rice.	 High performance liquid chromatography assays showed that the endogenous GA1 level in the sgd2 mutant was dramatically decreased, and exogenous GA3 recovered the second leaf sheath to normal length
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	transcription factor	Small Grain and Dwarf 2, encoding an HD-Zip II family transcription factor, regulates plant development by modulating gibberellin biosynthesis in rice.	 Map-based cloning and complementation tests demonstrated that a 9 bp deletion in a homeodomain leucine zipper (HD-Zip) II family transcription factor was responsible for the sgd2 mutant phenotype
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	sheath	Small Grain and Dwarf 2, encoding an HD-Zip II family transcription factor, regulates plant development by modulating gibberellin biosynthesis in rice.	 High performance liquid chromatography assays showed that the endogenous GA1 level in the sgd2 mutant was dramatically decreased, and exogenous GA3 recovered the second leaf sheath to normal length
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	map-based cloning	Small Grain and Dwarf 2, encoding an HD-Zip II family transcription factor, regulates plant development by modulating gibberellin biosynthesis in rice.	 Map-based cloning and complementation tests demonstrated that a 9 bp deletion in a homeodomain leucine zipper (HD-Zip) II family transcription factor was responsible for the sgd2 mutant phenotype
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	nucleus	Small Grain and Dwarf 2, encoding an HD-Zip II family transcription factor, regulates plant development by modulating gibberellin biosynthesis in rice.	 Expression of SGD2 was pronounced in developing panicles, and its protein was localized in nucleus
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	transcription factor	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	ABA	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	ga	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	 ga 	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	GA	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	GA biosynthesis	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
SGD2|OsHOX3	Os01g0643600	LOC_Os01g45570	 ABA 	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	 OsGF14h acts as a signal switch to balance ABA signaling and GA biosynthesis by interacting with the transcription factors OsHOX3 and OsVP1, thereby boosting the seeding rate from 13
SGL1	Os02g0762600	LOC_Os02g52490	plant height	Short grain1 decreases organ elongation and brassinosteroid response in rice.	In comparison with the wild-type plants, the SGL1:OX plants showed a 45% decrease in plant height due to a uniform decrease of culm internode elongation
SGL1	Os02g0762600	LOC_Os02g52490	grain length	Short grain1 decreases organ elongation and brassinosteroid response in rice.	Lengths of seeds, panicles, and internodes in the rachis branches were 17%, 39%, and 31% shorter than those of the wild-type plants, respectively, and all differences were statistically significant
SGL1	Os02g0762600	LOC_Os02g52490	seed length	Short grain1 decreases organ elongation and brassinosteroid response in rice.	Lengths of seeds, panicles, and internodes in the rachis branches were 17%, 39%, and 31% shorter than those of the wild-type plants, respectively, and all differences were statistically significant
SGL1	Os02g0762600	LOC_Os02g52490	seed length	Short grain1 decreases organ elongation and brassinosteroid response in rice.	Down-Regulation of Both SG1 and SGL1 Caused Elongation of Rice Seeds and of the Internodes between Spikelets in the Rachis Branches
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	senescence	Molecular cloning and function analysis of the stay green gene in rice	SGR, like the gene for pheophorbide a oxygenase (PaO), was constitutively expressed, but was upregulated by dark-induced senescence in rice leaves
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	senescence	Molecular cloning and function analysis of the stay green gene in rice	Senescence-induced expression of SGR and PaO was enhanced by ABA, but inhibited by cytokinin
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	senescence	Molecular cloning and function analysis of the stay green gene in rice	This indicates that upregulation of SGR increases Chl breakdown during senescence in rice
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	senescence	Molecular cloning and function analysis of the stay green gene in rice	A small quantity of chlorophyllide a accumulated in sgr leaves, but this also accumulated in wild-type rice leaves during senescence
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	seedling	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings	In this study, we found that overexpression of SGR (Ov-SGR) resulted in the generation of singlet oxygen and other reactive oxygen species and produced a chlorophyll-dependent regional cell death phenotype on leaves of rice seedlings
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	seedling	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings	Transcriptome analyses using Affymetrix Rice GeneChips revealed that Ov-SGR rice seedlings exhibited a number of signs of singlet oxygen response
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	seedling	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	oxidative	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	leaf	The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice	The Stay-Green Rice (SGR) protein is encoded by the SGR gene and has been shown to affect chlorophyll (Chl) degradation during natural and dark-induced leaf senescence
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	cytokinin	Molecular cloning and function analysis of the stay green gene in rice	Senescence-induced expression of SGR and PaO was enhanced by ABA, but inhibited by cytokinin
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	senescence	The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice	The Stay-Green Rice (SGR) protein is encoded by the SGR gene and has been shown to affect chlorophyll (Chl) degradation during natural and dark-induced leaf senescence
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	senescence	The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice	We show that SGRL is primarily expressed in green tissues, and is significantly downregulated in rice leaves undergoing natural and dark-induced senescence
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	senescence	The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice	Overexpression of SGRL reduces the levels of Chl and Chl-binding proteins in leaves, and accelerates their degradation in dark-induced senescence leaves in rice
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	chloroplast	Molecular cloning and function analysis of the stay green gene in rice	The gene, designated Stay Green Rice (SGR), was cloned by a positional cloning strategy encoding an ancient protein containing a putative chloroplast transit peptide
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	senescence	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings	It is thought that the Stay Green Rice (SGR) gene is involved in the disaggregation of the light harvesting complex and in the subsequent breakdown of chlorophyll and apo-protein during senescence
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	cell death	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings	In this study, we found that overexpression of SGR (Ov-SGR) resulted in the generation of singlet oxygen and other reactive oxygen species and produced a chlorophyll-dependent regional cell death phenotype on leaves of rice seedlings
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	cell death	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	senescence	Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars.	Promoter variations in the Stay-Green (OsSGR) gene encoding the chlorophyll-degrading Mg++-dechelatase were found to trigger higher and earlier induction of OsSGR in indica, which accelerated senescence of indica rice cultivars
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	grain	Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars.	Japonica OsSGR alleles introgressed into indica-type cultivars in Korean rice fields lead to delayed senescence, with increased grain yield and enhanced photosynthetic competence
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	grain yield	Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars.	Japonica OsSGR alleles introgressed into indica-type cultivars in Korean rice fields lead to delayed senescence, with increased grain yield and enhanced photosynthetic competence
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	yield	Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars.	Japonica OsSGR alleles introgressed into indica-type cultivars in Korean rice fields lead to delayed senescence, with increased grain yield and enhanced photosynthetic competence
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	yield	Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars.	Taken together, these data establish that naturally occurring OsSGR promoter and related lifespan variations can be exploited in breeding programs to augment rice yield
SGR|OsSGR	Os09g0532000	LOC_Os09g36200	breeding	Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars.	Taken together, these data establish that naturally occurring OsSGR promoter and related lifespan variations can be exploited in breeding programs to augment rice yield
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed	Origin of seed shattering in rice (Oryza sativa L.)	Here we show that the seed shattering is controlled by a single dominant gene, Shattering1 (SHA1), encoding a member of the trihelix family of plant-specific transcription factors
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed	Origin of seed shattering in rice (Oryza sativa L.)	Our results demonstrate that the g237t mutation in SHA1 accounts for the elimination of seed shattering, and that all the domesticated rice cultivars harbor the mutant sha1 gene and therefore have lost the ability to shed their seeds at maturity
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	transcription factor	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	Genetic analyses revealed that the expression of SHAT1 in AZ was positively regulated by the trihelix transcription factor SH4
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	domestication	Selection on grain shattering genes and rates of rice domestication	The sh4 phylogeny together with the neutrality tests and coalescent simulations suggested that sh4 had a single origin and was fixed by artificial selection during the domestication of rice
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	domestication	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	SH4 (for grain shattering quantitative trait locus on chromosome 4) and qSH1 (for quantitative trait locus of seed shattering on chromosome 1) genes have been identified as required for reduced seed shattering during rice (Oryza sativa) domestication
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	transcription factor	Origin of seed shattering in rice (Oryza sativa L.)	Here we show that the seed shattering is controlled by a single dominant gene, Shattering1 (SHA1), encoding a member of the trihelix family of plant-specific transcription factors
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	SH4 (for grain shattering quantitative trait locus on chromosome 4) and qSH1 (for quantitative trait locus of seed shattering on chromosome 1) genes have been identified as required for reduced seed shattering during rice (Oryza sativa) domestication
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	We also identified a frameshift mutant of SH4 that completely eliminated AZs and showed nonshattering
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Selection on grain shattering genes and rates of rice domestication	Here, we studied nucleotide variation at the shattering loci, sh4 and qSH1, for cultivated rice, Oryza sativa ssp
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Selection on grain shattering genes and rates of rice domestication	The nonshattering sh4 allele was fixed in all rice cultivars, with levels of sequence polymorphism significantly reduced in both indica and japonica cultivars relative to the wild progenitors
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Selection on grain shattering genes and rates of rice domestication	The slow fixation of the nonshattering phenotype observed at the archeological sites might be a result of relatively weak selection on mutations other than sh4 in early rice cultivation
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	grain	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	SH4 (for grain shattering quantitative trait locus on chromosome 4) and qSH1 (for quantitative trait locus of seed shattering on chromosome 1) genes have been identified as required for reduced seed shattering during rice (Oryza sativa) domestication
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed	Molecular evolution of shattering loci in U.S. weedy rice	We assessed allelic identity and diversity at the major shattering locus, sh4, in weedy rice; we find that all cultivated and weedy rice, regardless of population, share similar haplotypes at sh4, and all contain a single derived mutation associated with decreased seed shattering
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Origin of seed shattering in rice (Oryza sativa L.)	Here we show that the seed shattering is controlled by a single dominant gene, Shattering1 (SHA1), encoding a member of the trihelix family of plant-specific transcription factors
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Origin of seed shattering in rice (Oryza sativa L.)	Our results demonstrate that the g237t mutation in SHA1 accounts for the elimination of seed shattering, and that all the domesticated rice cultivars harbor the mutant sha1 gene and therefore have lost the ability to shed their seeds at maturity
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	spikelet	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	Our results suggest a genetic model in which the persistent and concentrated expression of active SHAT1 and SH4 in the AZ during early spikelet developmental stages is required for conferring AZ identification
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Molecular evolution of shattering loci in U.S. weedy rice	We assessed allelic identity and diversity at the major shattering locus, sh4, in weedy rice; we find that all cultivated and weedy rice, regardless of population, share similar haplotypes at sh4, and all contain a single derived mutation associated with decreased seed shattering
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Molecular evolution of shattering loci in U.S. weedy rice	The combination of a shared cultivar sh4 allele and a highly shattering phenotype, suggests that U
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	SH4 (for grain shattering quantitative trait locus on chromosome 4) and qSH1 (for quantitative trait locus of seed shattering on chromosome 1) genes have been identified as required for reduced seed shattering during rice (Oryza sativa) domestication
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	growth	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Our findings suggest that SH4 may have additional functions in the growth and development of rice, apart from its major role in seed shattering
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Rice seed shattering is an important domestication syndrome encoded by a gene named as SH4
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Our findings suggest that SH4 may have additional functions in the growth and development of rice, apart from its major role in seed shattering
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	domestication	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Rice seed shattering is an important domestication syndrome encoded by a gene named as SH4
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	development	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Our findings suggest that SH4 may have additional functions in the growth and development of rice, apart from its major role in seed shattering
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Rice seed shattering is an important domestication syndrome encoded by a gene named as SH4
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Our findings suggest that SH4 may have additional functions in the growth and development of rice, apart from its major role in seed shattering
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed shattering	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Rice seed shattering is an important domestication syndrome encoded by a gene named as SH4
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed shattering	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Our findings suggest that SH4 may have additional functions in the growth and development of rice, apart from its major role in seed shattering
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed	A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication.	 Interestingly, GL4 also controls the seed shattering phenotype like its orthologue SH4 gene in Asian rice
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication.	 Interestingly, GL4 also controls the seed shattering phenotype like its orthologue SH4 gene in Asian rice
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	seed shattering	A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication.	 Interestingly, GL4 also controls the seed shattering phenotype like its orthologue SH4 gene in Asian rice
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	shattering	Two SNP Mutations Turned off Seed Shattering in Rice.	 Comparative analysis at SH4 showed that all the accessions containing ancestral haplotype, including 78 wild relatives of rice and 8 African cultivated rice, had the shattering phenotype, whereas all the accessions with either of the homozygous domestic haplotypes at one of the two sites, including 17 wild relatives of rice, 111 African cultivated rice and 65 Asian cultivated rice, showed the non-shattering phenotype
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	transcription factor	Short grain 5 controls grain length in rice by regulating cell expansion.	 MutMap cloning revealed that SG5 encodes a Myb-like transcription factor
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	development	Short grain 5 controls grain length in rice by regulating cell expansion.	 Histochemical observation and gene expression analysis indicated that SG5 regulates spikelet hull development by mediating cell expansion
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	spikelet	Short grain 5 controls grain length in rice by regulating cell expansion.	 Histochemical observation and gene expression analysis indicated that SG5 regulates spikelet hull development by mediating cell expansion
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	grain	Short grain 5 controls grain length in rice by regulating cell expansion.	 The effect of pyramiding sg5 and GS3 suggests that sg5 and GS3 regulate grain length independently
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	grain	Short grain 5 controls grain length in rice by regulating cell expansion.	 The results of our study show that the missense mutation in sg5 is essential for the molecular function of SG5 and SG5 is involved in regulating cell expansion and expression of grain-shape-related genes to regulate grain length
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	grain length	Short grain 5 controls grain length in rice by regulating cell expansion.	 The effect of pyramiding sg5 and GS3 suggests that sg5 and GS3 regulate grain length independently
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	grain length	Short grain 5 controls grain length in rice by regulating cell expansion.	 The results of our study show that the missense mutation in sg5 is essential for the molecular function of SG5 and SG5 is involved in regulating cell expansion and expression of grain-shape-related genes to regulate grain length
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	nucleus	Short grain 5 controls grain length in rice by regulating cell expansion.	 In addition, the SG5 protein is found in the nucleus and does not affect subcellular localization
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	cell expansion	Short grain 5 controls grain length in rice by regulating cell expansion.	 Histochemical observation and gene expression analysis indicated that SG5 regulates spikelet hull development by mediating cell expansion
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	cell expansion	Short grain 5 controls grain length in rice by regulating cell expansion.	 The results of our study show that the missense mutation in sg5 is essential for the molecular function of SG5 and SG5 is involved in regulating cell expansion and expression of grain-shape-related genes to regulate grain length
sh4|SHA1|SG5	Os04g0670900	LOC_Os04g57530	young panicles	Short grain 5 controls grain length in rice by regulating cell expansion.	 SG5 is mainly expressed in young panicles and hulls
SH5|RI	Os05g0455200	LOC_Os05g38120	homeobox gene	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis
SH5|RI	Os05g0455200	LOC_Os05g38120	seed shattering	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis
SH5|RI	Os05g0455200	LOC_Os05g38120	shattering	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis
SH5|RI	Os05g0455200	LOC_Os05g38120	abscission-zone development	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis
SH5|RI	Os05g0455200	LOC_Os05g38120	development	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis
SH5|RI	Os05g0455200	LOC_Os05g38120	lignin biosynthesis	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis
SH5|RI	Os05g0455200	LOC_Os05g38120	lignin	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis	The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis
SH5|RI	Os05g0455200	LOC_Os05g38120	transcription factor	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	Gene isolation revealed that RI encodes a BELL1-type homeodomain transcription factor, similar to Arabidopsis PENNYWISE/ BELLRINGER/REPLUMLESS, and is expressed in the specific regions within the inflorescence and branch meristems where their descendant meristems would soon initiate
SH5|RI	Os05g0455200	LOC_Os05g38120	shoot	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	In addition, both RI and RIL1 seem to be involved in meristem maintenance, because the ri ril1 double mutant failed to establish or maintain the shoot apical meristem during embryogenesis
SH5|RI	Os05g0455200	LOC_Os05g38120	meristem	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	During early inflorescence development, the timing and arrangement of primary branch meristem (pBM) initiation was disturbed in both ri and ri ril1/+ plants
SH5|RI	Os05g0455200	LOC_Os05g38120	meristem	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	In addition, both RI and RIL1 seem to be involved in meristem maintenance, because the ri ril1 double mutant failed to establish or maintain the shoot apical meristem during embryogenesis
SH5|RI	Os05g0455200	LOC_Os05g38120	inflorescence	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	Gene isolation revealed that RI encodes a BELL1-type homeodomain transcription factor, similar to Arabidopsis PENNYWISE/ BELLRINGER/REPLUMLESS, and is expressed in the specific regions within the inflorescence and branch meristems where their descendant meristems would soon initiate
SH5|RI	Os05g0455200	LOC_Os05g38120	inflorescence	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	Genetic combination of an ri homozygote and a mutant allele of RI-LIKE1 (RIL1) (designated ri ril1/+ plant), a close paralog of RI, enhanced the ri inflorescence phenotype, including the abnormalities in branch phyllotaxy and rachis internode patterning
SH5|RI	Os05g0455200	LOC_Os05g38120	inflorescence	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	During early inflorescence development, the timing and arrangement of primary branch meristem (pBM) initiation was disturbed in both ri and ri ril1/+ plants
SH5|RI	Os05g0455200	LOC_Os05g38120	shoot apical meristem	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	In addition, both RI and RIL1 seem to be involved in meristem maintenance, because the ri ril1 double mutant failed to establish or maintain the shoot apical meristem during embryogenesis
SHAT1	Os04g0649100	LOC_Os04g55560	transcription factor	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	The SHAT1 gene, which encodes an APETALA2 transcription factor, is required for seed shattering through specifying abscission zone (AZ) development in rice
SHAT1	Os04g0649100	LOC_Os04g55560	transcription factor	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	Genetic analyses revealed that the expression of SHAT1 in AZ was positively regulated by the trihelix transcription factor SH4
SHAT1	Os04g0649100	LOC_Os04g55560	seed	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	Here, we identified a seed shattering abortion1 (shat1) mutant in a wild rice introgression line
SHAT1	Os04g0649100	LOC_Os04g55560	seed	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	The SHAT1 gene, which encodes an APETALA2 transcription factor, is required for seed shattering through specifying abscission zone (AZ) development in rice
SHAT1	Os04g0649100	LOC_Os04g55560	shattering	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	Here, we identified a seed shattering abortion1 (shat1) mutant in a wild rice introgression line
SHAT1	Os04g0649100	LOC_Os04g55560	shattering	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	The SHAT1 gene, which encodes an APETALA2 transcription factor, is required for seed shattering through specifying abscission zone (AZ) development in rice
SHAT1	Os04g0649100	LOC_Os04g55560	spikelet	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1	Our results suggest a genetic model in which the persistent and concentrated expression of active SHAT1 and SH4 in the AZ during early spikelet developmental stages is required for conferring AZ identification
SHO1|OsDCL4	Os04g0509300	LOC_Os04g43050	leaf development	The small interfering RNA production pathway is required for shoot meristem initiation in rice	Rice SHL2, SHL4/SHO2, and SHO1 encoded orthologues of Arabidopsis RNA-dependent RNA polymerase 6, ARGONAUTE (AGO) 7, and DICER-like 4, respectively, whose mutations affect leaf development through the trans-acting siRNA (ta-siRNA) pathway
SHO1|OsDCL4	Os04g0509300	LOC_Os04g43050	shoot	Shoot organization genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice	The mechanism regulating the pattern of leaf initiation was analyzed by using shoot organization (sho) mutants derived from three loci (SHO1, SHO2, and SHO3)
SHO1|OsDCL4	Os04g0509300	LOC_Os04g43050	shoot	The small interfering RNA production pathway is required for shoot meristem initiation in rice	Mutations in rice SHOOTLESS2 (SHL2), SHL4/SHOOT ORGANIZATION2 (SHO2), and SHO1 cause complete deletion or abnormal formation of the SAM
SHO1|OsDCL4	Os04g0509300	LOC_Os04g43050	leaf	Shoot organization genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice	The mechanism regulating the pattern of leaf initiation was analyzed by using shoot organization (sho) mutants derived from three loci (SHO1, SHO2, and SHO3)
SHO1|OsDCL4	Os04g0509300	LOC_Os04g43050	leaf	The small interfering RNA production pathway is required for shoot meristem initiation in rice	Rice SHL2, SHL4/SHO2, and SHO1 encoded orthologues of Arabidopsis RNA-dependent RNA polymerase 6, ARGONAUTE (AGO) 7, and DICER-like 4, respectively, whose mutations affect leaf development through the trans-acting siRNA (ta-siRNA) pathway
SHPR	Os03g0116800	LOC_Os03g02560	root	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 Collectively, our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation, and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice
SHPR	Os03g0116800	LOC_Os03g02560	nucleus	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 We show that SHPR interacts with Oryza sativa SEUSS-LIKE (OsSLK) in the nucleus and is required for OsSLK polyubiquitination and degradation by the ubiquitin 26S-proteasome system (UPS)
SHPR	Os03g0116800	LOC_Os03g02560	meristem	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 Collectively, our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation, and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice
SHPR	Os03g0116800	LOC_Os03g02560	Ubiquitin	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 We show that SHPR interacts with Oryza sativa SEUSS-LIKE (OsSLK) in the nucleus and is required for OsSLK polyubiquitination and degradation by the ubiquitin 26S-proteasome system (UPS)
SHPR	Os03g0116800	LOC_Os03g02560	Ubiquitin	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 Collectively, our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation, and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice
SHPR	Os03g0116800	LOC_Os03g02560	root meristem	The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	 Collectively, our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation, and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice
SID1|OsIDD4	Os02g0672100	LOC_Os02g45054	transcription factor	Suppressor of rid1 (SID1) shares common targets with RID1 on florigen genes to initiate floral transition in rice.	SID1 encodes an INDETERMINATE DOMAIN (IDD) transcription factor
SIDP361	Os01g0612600	LOC_Os01g42700	seedling	Over-expression of a DUF1644 protein gene, SIDP361, enhances tolerance to salt stress in transgenic rice	When compared with the untransformed wild-type (WT) control, transgenic plants over-expressing SIDP361 exhibited significantly improved tolerance to salt stress at both the seedling and heading stages
SIDP361	Os01g0612600	LOC_Os01g42700	salt	Over-expression of a DUF1644 protein gene, SIDP361, enhances tolerance to salt stress in transgenic rice	When compared with the untransformed wild-type (WT) control, transgenic plants over-expressing SIDP361 exhibited significantly improved tolerance to salt stress at both the seedling and heading stages
SIDP361	Os01g0612600	LOC_Os01g42700	salt	Over-expression of a DUF1644 protein gene, SIDP361, enhances tolerance to salt stress in transgenic rice	These results demonstrate that SIDP361 has high potential as a tool for genetically improving salt tolerance in rice
SIDP361	Os01g0612600	LOC_Os01g42700	tolerance	Over-expression of a DUF1644 protein gene, SIDP361, enhances tolerance to salt stress in transgenic rice	When compared with the untransformed wild-type (WT) control, transgenic plants over-expressing SIDP361 exhibited significantly improved tolerance to salt stress at both the seedling and heading stages
SIDP361	Os01g0612600	LOC_Os01g42700	tolerance	Over-expression of a DUF1644 protein gene, SIDP361, enhances tolerance to salt stress in transgenic rice	These results demonstrate that SIDP361 has high potential as a tool for genetically improving salt tolerance in rice
SIDP361	Os01g0612600	LOC_Os01g42700	salt tolerance	Over-expression of a DUF1644 protein gene, SIDP361, enhances tolerance to salt stress in transgenic rice	These results demonstrate that SIDP361 has high potential as a tool for genetically improving salt tolerance in rice
SIDP361	Os01g0612600	LOC_Os01g42700	salt stress	Over-expression of a DUF1644 protein gene, SIDP361, enhances tolerance to salt stress in transgenic rice	When compared with the untransformed wild-type (WT) control, transgenic plants over-expressing SIDP361 exhibited significantly improved tolerance to salt stress at both the seedling and heading stages
SIDP361	Os01g0612600	LOC_Os01g42700	stress	Over-expression of a DUF1644 protein gene, SIDP361, enhances tolerance to salt stress in transgenic rice	When compared with the untransformed wild-type (WT) control, transgenic plants over-expressing SIDP361 exhibited significantly improved tolerance to salt stress at both the seedling and heading stages
SIP1|OsSUF4	Os09g0560900	LOC_Os09g38790	transcription factor	SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.	Together, our results show that the transcription factor SIP1 interacts with OxTrx1, allowing OsTrx1 to specifically target Ehd1, altering H3K4me3 levels, increasing Ehd1 expression and thereby promoting flowering
SIP1|OsSUF4	Os09g0560900	LOC_Os09g38790	heading date	SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.	Mutations in SIP1 led to a late heading date under long-day and short-day conditions
SIP1|OsSUF4	Os09g0560900	LOC_Os09g38790	flowering time	SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.	SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.
SIP1|OsSUF4	Os09g0560900	LOC_Os09g38790	transcription factor	The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.	The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.
SIP1|OsSUF4	Os09g0560900	LOC_Os09g38790	transcription factor	The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.	Here, we show that the transcription factor OsSUF4 recognizes a specific 7-bp DNA element, broadly distributes throughout the rice genome, and recruits the H3K36 methyltransferase SDG725 to target a set of genes including the key florigen genes RFT1 and Hd3a to promote flowering in rice
SIP1|OsSUF4	Os09g0560900	LOC_Os09g38790	zinc	The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.	Biochemical and structural analyses indicate that several positive residues within the zinc finger domain are vital for OsSUF4 function in planta
SIP1|OsSUF4	Os09g0560900	LOC_Os09g38790	methyltransferase	The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.	Here, we show that the transcription factor OsSUF4 recognizes a specific 7-bp DNA element, broadly distributes throughout the rice genome, and recruits the H3K36 methyltransferase SDG725 to target a set of genes including the key florigen genes RFT1 and Hd3a to promote flowering in rice
siR109944	None	None	leaf	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Additionally, multiple agronomic traits of rice, including root length and flag leaf inclination, were affected by siR109944 expression
siR109944	None	None	root	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Additionally, multiple agronomic traits of rice, including root length and flag leaf inclination, were affected by siR109944 expression
siR109944	None	None	growth	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Our results demonstrate that siR109944 has a conserved function in interfering with plant immunity, growth and development by affecting auxin homeostasis in planta
siR109944	None	None	auxin	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.
siR109944	None	None	auxin	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Auxin metabolism- and signaling pathway-related genes were differentially expressed in the siR109944 OE and FBL55 OE plants
siR109944	None	None	auxin	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Our results demonstrate that siR109944 has a conserved function in interfering with plant immunity, growth and development by affecting auxin homeostasis in planta
siR109944	None	None	resistance	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	We found that rice had significantly enhanced susceptibility when siR109944 was overexpressed, while FBL55 OE plants showed resistance to R
siR109944	None	None	tiller	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Furthermore, transgenic Arabidopsis overexpressing siR109944 exhibited early flowering, increased tiller numbers and increased susceptibility to R
siR109944	None	None	development	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Our results demonstrate that siR109944 has a conserved function in interfering with plant immunity, growth and development by affecting auxin homeostasis in planta
siR109944	None	None	sheath	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.
siR109944	None	None	blight	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.
siR109944	None	None	homeostasis	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Our results demonstrate that siR109944 has a conserved function in interfering with plant immunity, growth and development by affecting auxin homeostasis in planta
siR109944	None	None	breeding	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Thus, siR109944 provides a genetic target for plant breeding in the future
siR109944	None	None	immunity	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.
siR109944	None	None	tiller number	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Furthermore, transgenic Arabidopsis overexpressing siR109944 exhibited early flowering, increased tiller numbers and increased susceptibility to R
siR109944	None	None	root length	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Additionally, multiple agronomic traits of rice, including root length and flag leaf inclination, were affected by siR109944 expression
SIT1	Os02g0640500	LOC_Os02g42780	Salt Sensitivity	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice
SIT1	Os02g0640500	LOC_Os02g42780	Kinase	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice
SIT1	Os02g0640500	LOC_Os02g42780	ethylene homeostasis	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice
SIT1	Os02g0640500	LOC_Os02g42780	root epidermal cells	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice	Here, we demonstrate that rice (Oryza sativa) Salt Intolerance 1 (SIT1), a lectin receptor-like kinase expressed mainly in root epidermal cells, mediates salt sensitivity.
SIT1	Os02g0640500	LOC_Os02g42780	ethylene production	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice	SIT1 mediates ethylene production and salt-induced ethylene signaling. SIT1 promotes accumulation of reactive oxygen species (ROS), leading to growth inhibition and plant death under salt stress, which occurred in an MPK3/6- and ethylene signaling-dependent manner in Arabidopsis thaliana.
SIT1	Os02g0640500	LOC_Os02g42780	reactive oxygen species	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice	SIT1 mediates ethylene production and salt-induced ethylene signaling. SIT1 promotes accumulation of reactive oxygen species (ROS), leading to growth inhibition and plant death under salt stress, which occurred in an MPK3/6- and ethylene signaling-dependent manner in Arabidopsis thaliana.
SIT1	Os02g0640500	LOC_Os02g42780	growth	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Consequently, by blocking SIT1 phosphorylation, B'κ inhibits and fine tunes SIT1 activity to balance plant growth and stress adaptation
SIT1	Os02g0640500	LOC_Os02g42780	salt	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.
SIT1	Os02g0640500	LOC_Os02g42780	salt	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	The receptor-like kinase SIT1 acts as a sensor in rice roots, relaying salt stress signals via elevated kinase activity to enhance salt sensitivity
SIT1	Os02g0640500	LOC_Os02g42780	salt	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Here, we demonstrate that Protein Phosphatase 2A (PP2A) regulatory subunit B'κ constrains SIT1 activity under salt stress
SIT1	Os02g0640500	LOC_Os02g42780	salt	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	During early salt stress, activated SIT1 phosphorylates B'κ; this not only enhances its binding with SIT1, it also promotes B'κ protein accumulation via Ser502 phosphorylation
SIT1	Os02g0640500	LOC_Os02g42780	salt stress	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.
SIT1	Os02g0640500	LOC_Os02g42780	salt stress	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	The receptor-like kinase SIT1 acts as a sensor in rice roots, relaying salt stress signals via elevated kinase activity to enhance salt sensitivity
SIT1	Os02g0640500	LOC_Os02g42780	salt stress	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Here, we demonstrate that Protein Phosphatase 2A (PP2A) regulatory subunit B'κ constrains SIT1 activity under salt stress
SIT1	Os02g0640500	LOC_Os02g42780	salt stress	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	During early salt stress, activated SIT1 phosphorylates B'κ; this not only enhances its binding with SIT1, it also promotes B'κ protein accumulation via Ser502 phosphorylation
SIT1	Os02g0640500	LOC_Os02g42780	stress	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	The receptor-like kinase SIT1 acts as a sensor in rice roots, relaying salt stress signals via elevated kinase activity to enhance salt sensitivity
SIT1	Os02g0640500	LOC_Os02g42780	stress	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Here, we demonstrate that Protein Phosphatase 2A (PP2A) regulatory subunit B'κ constrains SIT1 activity under salt stress
SIT1	Os02g0640500	LOC_Os02g42780	stress	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Consequently, by blocking SIT1 phosphorylation, B'κ inhibits and fine tunes SIT1 activity to balance plant growth and stress adaptation
SIT1	Os02g0640500	LOC_Os02g42780	Kinase	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.
SIT1	Os02g0640500	LOC_Os02g42780	Kinase	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	The receptor-like kinase SIT1 acts as a sensor in rice roots, relaying salt stress signals via elevated kinase activity to enhance salt sensitivity
SIT1	Os02g0640500	LOC_Os02g42780	Kinase	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	B'κ-PP2A deactivates SIT1 directly by dephosphorylating the kinase at Thr515/516, a salt-induced phosphorylation site in the activation loop that is essential for SIT1 activity
SIT1	Os02g0640500	LOC_Os02g42780	plant growth	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Consequently, by blocking SIT1 phosphorylation, B'κ inhibits and fine tunes SIT1 activity to balance plant growth and stress adaptation
SIT1	Os02g0640500	LOC_Os02g42780	protein phosphatase	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	Here, we demonstrate that Protein Phosphatase 2A (PP2A) regulatory subunit B'κ constrains SIT1 activity under salt stress
SIT1	Os02g0640500	LOC_Os02g42780	Salt Sensitivity	Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.	The receptor-like kinase SIT1 acts as a sensor in rice roots, relaying salt stress signals via elevated kinase activity to enhance salt sensitivity
SKIN1	Os09g0499000	LOC_Os09g32330	GKSKSF domain	SnRK1A-interacting negative regulators modulate the nutrient starvation signaling sensor SnRK1 in source-sink communication in cereal seedlings under abiotic stress	Bioinformatics analysis identified a highly conserved GKSKSF domain (KSD) present in SKIN1 and SKIN2 as well as in several other related proteins from various plant species
SKIN2	Os08g0516900	LOC_Os08g40510	GKSKSF domain	SnRK1A-interacting negative regulators modulate the nutrient starvation signaling sensor SnRK1 in source-sink communication in cereal seedlings under abiotic stress	Bioinformatics analysis identified a highly conserved GKSKSF domain (KSD) present in SKIN1 and SKIN2 as well as in several other related proteins from various plant species
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	vegetative	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)	OsJAG is an important gene with pleiotropy, expressing almost throughout the plant and acting in both vegetative phase and reproductive phase
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	palea	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	The sl1 mutant largely resembles the rice B-class gene mutant spw1; both exhibit homeotic conversions of lodicules and stamens to palea/lemma-like organs and carpels
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	lemma	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	The sl1 mutant largely resembles the rice B-class gene mutant spw1; both exhibit homeotic conversions of lodicules and stamens to palea/lemma-like organs and carpels
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	sterile	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)	Loss of OsJAG function results in maldevelopment of all floral organs, such as degenerated lemma and palea, elongated lodicules and deformed and sterile pistil
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	lemma	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)	Loss of OsJAG function results in maldevelopment of all floral organs, such as degenerated lemma and palea, elongated lodicules and deformed and sterile pistil
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	flower	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	Additionally, sl1 produces flowers with varied numbers of inner floral organs, and amorphous tissues without floral organ identity were frequently formed in whorls 3 and 4
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	floral	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	Here, we report molecular cloning and characterization of the rice STAMENLESS 1 (SL1) gene that is involved in floral development
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	floral	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	Additionally, sl1 produces flowers with varied numbers of inner floral organs, and amorphous tissues without floral organ identity were frequently formed in whorls 3 and 4
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	floral	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	The functional divergence between SL1 and JAG implies that SL1 was co-opted for its distinctive roles in specification of floral organ identity in rice after the lineage split from Arabidopsis
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	palea	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)	Loss of OsJAG function results in maldevelopment of all floral organs, such as degenerated lemma and palea, elongated lodicules and deformed and sterile pistil
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	reproductive	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)	OsJAG is an important gene with pleiotropy, expressing almost throughout the plant and acting in both vegetative phase and reproductive phase
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	stamen	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	Here, we report molecular cloning and characterization of the rice STAMENLESS 1 (SL1) gene that is involved in floral development
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	stamen	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	The sl1 mutant largely resembles the rice B-class gene mutant spw1; both exhibit homeotic conversions of lodicules and stamens to palea/lemma-like organs and carpels
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	stamen	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice	We also show that SL1 specifies lodicule and stamen identities through positive transcriptional regulation of SPW1/OsMADS16 expression
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	floral	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)	Interestingly, OsJAG does not affect the number of floral organ primordial and so of floral organs in each whorl, suggesting that OsJAG does not influence the initiation of floral organ primordia, but affect the developmental fate of all floral organs after their primordia have initiated
SL1|OsJAG	Os01g0129200	LOC_Os01g03840	floral	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)	Loss of OsJAG function results in maldevelopment of all floral organs, such as degenerated lemma and palea, elongated lodicules and deformed and sterile pistil
SLAC7	Os01g0385400	LOC_Os01g28840	chloroplast	Loss-of-function mutation of rice SLAC7 decreases chloroplast stability and induces a photoprotection mechanism in rice.	Loss-of-function mutation of rice SLAC7 decreases chloroplast stability and induces a photoprotection mechanism in rice.
SLAC7	Os01g0385400	LOC_Os01g28840	chloroplast	Loss-of-function mutation of rice SLAC7 decreases chloroplast stability and induces a photoprotection mechanism in rice.	These results suggest that SLAC7 is essential for maintaining the chloroplast stability in rice
SLB1|OsMAX1	Os01g0700900	LOC_Os01g50520	strigolactone biosynthesis	Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis	Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis
SLB1|OsMAX1	Os01g0700900	LOC_Os01g50520	tiller number	Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis	Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis
SLC1	Os08g0560000	LOC_Os08g44590	leaf	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Down-regulation of SLC1 and SLC2 at the same time in the SLC1-SLC2 RNAi lines resulted in a severe defect in early leaf development
SLC1	Os08g0560000	LOC_Os08g44590	leaf development	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Down-regulation of SLC1 and SLC2 at the same time in the SLC1-SLC2 RNAi lines resulted in a severe defect in early leaf development
SLC1	Os08g0560000	LOC_Os08g44590	shoot	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.
SLC1	Os08g0560000	LOC_Os08g44590	shoot	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Here, we report that two dioxygenase-encoding genes, SLC1 (slender and crinklyleaf 1) and SLC2 (slender and crinklyleaf 2), play essential roles in shoot development and SA production in rice (Oryza sativa)
SLC1	Os08g0560000	LOC_Os08g44590	shoot	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Collectively, our data revealed the importance of SLC1 and SLC2 in the shoot development of rice
SLC1	Os08g0560000	LOC_Os08g44590	development	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.
SLC1	Os08g0560000	LOC_Os08g44590	development	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Here, we report that two dioxygenase-encoding genes, SLC1 (slender and crinklyleaf 1) and SLC2 (slender and crinklyleaf 2), play essential roles in shoot development and SA production in rice (Oryza sativa)
SLC1	Os08g0560000	LOC_Os08g44590	development	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Down-regulation of SLC1 and SLC2 at the same time in the SLC1-SLC2 RNAi lines resulted in a severe defect in early leaf development
SLC1	Os08g0560000	LOC_Os08g44590	development	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Collectively, our data revealed the importance of SLC1 and SLC2 in the shoot development of rice
SLC1	Os08g0560000	LOC_Os08g44590	dwarf	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Disruption of SLC1 or SLC2 led to dwarf plants
SLC1	Os08g0560000	LOC_Os08g44590	sa	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Here, we report that two dioxygenase-encoding genes, SLC1 (slender and crinklyleaf 1) and SLC2 (slender and crinklyleaf 2), play essential roles in shoot development and SA production in rice (Oryza sativa)
SLC1	Os08g0560000	LOC_Os08g44590	sa	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Enhanced SA level in the SLC1-OE plants and decreased SA level in the slc1 and slc2 mutants were scored
SLC1	Os08g0560000	LOC_Os08g44590	SA	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Here, we report that two dioxygenase-encoding genes, SLC1 (slender and crinklyleaf 1) and SLC2 (slender and crinklyleaf 2), play essential roles in shoot development and SA production in rice (Oryza sativa)
SLC1	Os08g0560000	LOC_Os08g44590	SA	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Enhanced SA level in the SLC1-OE plants and decreased SA level in the slc1 and slc2 mutants were scored
SLC2	Os09g0570800	LOC_Os09g39720	leaf	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Down-regulation of SLC1 and SLC2 at the same time in the SLC1-SLC2 RNAi lines resulted in a severe defect in early leaf development
SLC2	Os09g0570800	LOC_Os09g39720	leaf development	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Down-regulation of SLC1 and SLC2 at the same time in the SLC1-SLC2 RNAi lines resulted in a severe defect in early leaf development
SLC2	Os09g0570800	LOC_Os09g39720	shoot	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Here, we report that two dioxygenase-encoding genes, SLC1 (slender and crinklyleaf 1) and SLC2 (slender and crinklyleaf 2), play essential roles in shoot development and SA production in rice (Oryza sativa)
SLC2	Os09g0570800	LOC_Os09g39720	shoot	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Collectively, our data revealed the importance of SLC1 and SLC2 in the shoot development of rice
SLC2	Os09g0570800	LOC_Os09g39720	development	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Here, we report that two dioxygenase-encoding genes, SLC1 (slender and crinklyleaf 1) and SLC2 (slender and crinklyleaf 2), play essential roles in shoot development and SA production in rice (Oryza sativa)
SLC2	Os09g0570800	LOC_Os09g39720	development	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Down-regulation of SLC1 and SLC2 at the same time in the SLC1-SLC2 RNAi lines resulted in a severe defect in early leaf development
SLC2	Os09g0570800	LOC_Os09g39720	development	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Collectively, our data revealed the importance of SLC1 and SLC2 in the shoot development of rice
SLC2	Os09g0570800	LOC_Os09g39720	dwarf	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Disruption of SLC1 or SLC2 led to dwarf plants
SLC2	Os09g0570800	LOC_Os09g39720	sa	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Here, we report that two dioxygenase-encoding genes, SLC1 (slender and crinklyleaf 1) and SLC2 (slender and crinklyleaf 2), play essential roles in shoot development and SA production in rice (Oryza sativa)
SLC2	Os09g0570800	LOC_Os09g39720	sa	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Enhanced SA level in the SLC1-OE plants and decreased SA level in the slc1 and slc2 mutants were scored
SLC2	Os09g0570800	LOC_Os09g39720	SA	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Here, we report that two dioxygenase-encoding genes, SLC1 (slender and crinklyleaf 1) and SLC2 (slender and crinklyleaf 2), play essential roles in shoot development and SA production in rice (Oryza sativa)
SLC2	Os09g0570800	LOC_Os09g39720	SA	Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice.	Enhanced SA level in the SLC1-OE plants and decreased SA level in the slc1 and slc2 mutants were scored
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	leaf	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	The sles phenotype differed from that of other LMMs in that lesion mimic spots were observed on the leaf sheath rather than on leaves
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	leaf	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Taken together, our results revealed that SLES was associated with the formation of lesion mimic spots on the leaf sheath resulting early senescence and defense responses
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	senescence	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Taken together, our results revealed that SLES was associated with the formation of lesion mimic spots on the leaf sheath resulting early senescence and defense responses
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	resistance	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Further examination of SLES will facilitate a better understanding of the molecular mechanisms involved in ROS homeostasis and may also provide opportunities to improve pathogen resistance in rice
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	sheath	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	The sles phenotype differed from that of other LMMs in that lesion mimic spots were observed on the leaf sheath rather than on leaves
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	sheath	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Taken together, our results revealed that SLES was associated with the formation of lesion mimic spots on the leaf sheath resulting early senescence and defense responses
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	defense	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Taken together, our results revealed that SLES was associated with the formation of lesion mimic spots on the leaf sheath resulting early senescence and defense responses
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	defense response	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Taken together, our results revealed that SLES was associated with the formation of lesion mimic spots on the leaf sheath resulting early senescence and defense responses
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	homeostasis	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Further examination of SLES will facilitate a better understanding of the molecular mechanisms involved in ROS homeostasis and may also provide opportunities to improve pathogen resistance in rice
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	pathogen	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Further examination of SLES will facilitate a better understanding of the molecular mechanisms involved in ROS homeostasis and may also provide opportunities to improve pathogen resistance in rice
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	lesion	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	The sles phenotype differed from that of other LMMs in that lesion mimic spots were observed on the leaf sheath rather than on leaves
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	lesion	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Taken together, our results revealed that SLES was associated with the formation of lesion mimic spots on the leaf sheath resulting early senescence and defense responses
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	lesion mimic	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	The sles phenotype differed from that of other LMMs in that lesion mimic spots were observed on the leaf sheath rather than on leaves
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	lesion mimic	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Taken together, our results revealed that SLES was associated with the formation of lesion mimic spots on the leaf sheath resulting early senescence and defense responses
SLES	Os07g0438500|Os07g0438550	LOC_Os07g25680	pathogen resistance	Identification of a Spotted Leaf Sheath Gene Involved in Early Senescence and Defense Response in Rice.	Further examination of SLES will facilitate a better understanding of the molecular mechanisms involved in ROS homeostasis and may also provide opportunities to improve pathogen resistance in rice
SLG	Os08g0562500	LOC_Os08g44840	leaf	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.
SLG	Os08g0562500	LOC_Os08g44840	leaf	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	Moreover, SLG RNAi plants displayed mild BR-deficient phenotypes including shorter grains, smaller leaf angles, and compact semi-dwarf plant types
SLG	Os08g0562500	LOC_Os08g44840	growth	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	SLG is preferentially expressed in young panicles and lamina joints, implying its role in controlling cell growth in those two tissues
SLG	Os08g0562500	LOC_Os08g44840	grain	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.
SLG	Os08g0562500	LOC_Os08g44840	grain size	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.
SLG	Os08g0562500	LOC_Os08g44840	homeostasis	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.
SLG	Os08g0562500	LOC_Os08g44840	homeostasis	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	Taken together, we conclude that SLG is an important regulator in BR homeostasis and that manipulation of SLG expression to an optimal level may provide a way to develop an ideal plant type
SLG	Os08g0562500	LOC_Os08g44840	brassinosteroid	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.
SLG	Os08g0562500	LOC_Os08g44840	BR	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	Overexpression of SLG in d11-2 (deficient in BR synthesis) and d61-1 (deficient in BR signaling) did not change the existing phenotypes
SLG	Os08g0562500	LOC_Os08g44840	BR	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	Taken together, we conclude that SLG is an important regulator in BR homeostasis and that manipulation of SLG expression to an optimal level may provide a way to develop an ideal plant type
SLG	Os08g0562500	LOC_Os08g44840	Brassinosteroid	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.
SLG	Os08g0562500	LOC_Os08g44840	BR signaling	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	Overexpression of SLG in d11-2 (deficient in BR synthesis) and d61-1 (deficient in BR signaling) did not change the existing phenotypes
SLG	Os08g0562500	LOC_Os08g44840	lamina	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	SLG is preferentially expressed in young panicles and lamina joints, implying its role in controlling cell growth in those two tissues
SLG	Os08g0562500	LOC_Os08g44840	lamina joint	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	SLG is preferentially expressed in young panicles and lamina joints, implying its role in controlling cell growth in those two tissues
SLG	Os08g0562500	LOC_Os08g44840	BR homeostasis	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	Taken together, we conclude that SLG is an important regulator in BR homeostasis and that manipulation of SLG expression to an optimal level may provide a way to develop an ideal plant type
SLG1	Os12g0588900	LOC_Os12g39840	temperature	Natural variations of SLG1 confer high-temperature tolerance in indica rice	Dysfunction of SLG1 results in plants with thermosensitive phenotype, while overexpression of SLG1 enhances the tolerance of plants to high temperature
SLG1	Os12g0588900	LOC_Os12g39840	seedling	Natural variations of SLG1 confer high-temperature tolerance in indica rice	SLG1 plays a key role in the response of rice plants to high-temperature stress at both seedling and reproductive stages
SLG1	Os12g0588900	LOC_Os12g39840	tolerance	Natural variations of SLG1 confer high-temperature tolerance in indica rice	Natural variations of SLG1 confer high-temperature tolerance in indica rice
SLG1	Os12g0588900	LOC_Os12g39840	tolerance	Natural variations of SLG1 confer high-temperature tolerance in indica rice	Dysfunction of SLG1 results in plants with thermosensitive phenotype, while overexpression of SLG1 enhances the tolerance of plants to high temperature
SLG1	Os12g0588900	LOC_Os12g39840	stress	Natural variations of SLG1 confer high-temperature tolerance in indica rice	SLG1 plays a key role in the response of rice plants to high-temperature stress at both seedling and reproductive stages
SLG1	Os12g0588900	LOC_Os12g39840	reproductive	Natural variations of SLG1 confer high-temperature tolerance in indica rice	SLG1 plays a key role in the response of rice plants to high-temperature stress at both seedling and reproductive stages
SLG1	Os12g0588900	LOC_Os12g39840	breeding	Natural variations of SLG1 confer high-temperature tolerance in indica rice	Our results demonstrate that the allelic differentiation of SLG1 confers indica rice to high-temperature tolerance, and tRNA thiolation pathway might be a potential target in the next generation rice breeding for the warming globe
SLP1	Os01g0702300	LOC_Os01g50680	awn	Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.	The RAE2 precursor is specifically cleaved by SLP1 in the rice spikelet, where the mature RAE2 peptide subsequently induces awn elongation
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice	It is assumed that interaction between GIBBERELLIN INSENSITIVE DWARF1 (GID1) and the N-terminal DELLA/TVHYNP motif of SLR1 triggers F-box protein GID2-mediated SLR1 degradation
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice	We identified a semidominant dwarf mutant, Slr1-d4, which contains a mutation in the region encoding the C-terminal GRAS domain of SLR1 (SLR1(G576V))
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	seed	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8	We also succeeded in producing GA-insensitive dwarf rice by transforming wild-type rice with a modified SLR1 gene construct that has a 17–amino acid deletion affecting the DELLA region
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice	Map-based cloning revealed that the dwarf phenotype in these mutants was caused by gain-of-function mutations in the N-terminal region of SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice	Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ABA 	The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level	These results indicate that constitutive activation of the GA signal transduction pathway by the slr1-1 mutation promotes the endogenous ABA level
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level	The slender rice (slr1-1) mutant, carrying a lethal and recessive single mutation, has a constitutive gibberellin (GA)-response phenotype and behaves as if it were saturated with GAs [Ikeda et al
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	Overexpression of SLR1 in wild-type plants caused a severe dwarf phenotype, which was significantly suppressed by EL1 deficiency, indicating the negative effect of SLR1 on GA signalling requires the EL1 function
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling	The enhanced expression of GA biosynthetic genes in dgl1 is not caused by inappropriate GA signaling because the expression of these genes was repressed by GA3 treatment, and degradation of the rice DELLA protein SLR1 was triggered by GA3 in this mutant
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	homeostasis	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level	The SLR1 gene, with sequence homology to members of the plant-specific GRAS gene family, is a mediator of the GA signal transduction process
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level	These results indicate that constitutive activation of the GA signal transduction pathway by the slr1-1 mutation promotes the endogenous ABA level
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	height	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8	SLR1 maps to OsGAI in rice and has significant homology with height-regulating genes, such as RHT-1Da in wheat, D8 in maize, and GAI and RGA in Arabidopsis
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	height	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	flower	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	When SLR1 proteins with various deletions were over-expressed in rice, the severity of dwarfism correlated with the transactivation activity observed in yeast, indicating that SLR1 suppresses plant growth through transactivation activity
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	In GA-insensitive and GA biosynthesis mutants, SLENDER RICE1 (SLR1) accumulates to high levels, and the severity of dwarfism is usually correlated with the level of SLR1 accumulation
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	An exception is the GA-insensitive F-box mutant gid2, which shows milder dwarfism than mutants such as gid1 and cps even though it accumulates higher levels of SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	The level of SLR1 protein in gid2 was decreased by loss of GID1 function or treatment with a GA biosynthesis inhibitor, and dwarfism was enhanced
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	Conversely, overproduction of GID1 or treatment with GA(3) increased the SLR1 level in gid2 and reduced dwarfism
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	Overexpression of SLR1 in wild-type plants caused a severe dwarf phenotype, which was significantly suppressed by EL1 deficiency, indicating the negative effect of SLR1 on GA signalling requires the EL1 function
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	Further studies showed that the phosphorylation of SLR1 is important for maintaining its activity and stability, and mutation of the candidate phosphorylation site of SLR1 results in the altered GA signalling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	shoot	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice	GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	The Gibberellin Signaling Pathway Is Regulated by the Appearance and Disappearance of SLENDER RICE1 in Nuclei	SLR1-GFP worked in nuclei to repress the GA signaling pathway; its overproduction caused a dwarf phenotype
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice	The rice SLR1 (SLENDER RICE 1) gene encodes a DELLA protein that belongs to a subfamily of the GRAS protein superfamily and that functions as a repressor of gibberellin (GA) signaling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	brassinosteroid	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	This indicates that the function of OsSPY in GA signaling is not via changes in the amount or stability of SLR1, but probably involves control of the suppressive function of SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8	The rice slender mutant (slr1-1) is caused by a single recessive mutation and results in a constitutive gibberellin (GA) response phenotype
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Notably Sub1A increased the accumulation of the GA signaling repressors Slender Rice-1 (SLR1) and SLR1 Like-1 (SLRL1) and concomitantly diminished GA-inducible gene expression under submerged conditions
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Together, these results demonstrate that Sub1A limits ethylene-promoted GA responsiveness during submergence by augmenting accumulation of the GA signaling repressors SLR1 and SLRL1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	In the Sub1A overexpression line, SLR1 protein levels declined under prolonged submergence but were accompanied by an increase in accumulation of SLRL1, which lacks the DELLA domain
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Together, these results demonstrate that Sub1A limits ethylene-promoted GA responsiveness during submergence by augmenting accumulation of the GA signaling repressors SLR1 and SLRL1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8	These results indicate that the product of the SLR1 gene is an intermediate of the GA signal transduction pathway
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8	Furthermore, introduction of a 6-kb genomic DNA fragment containing the wild-type SLR1 gene into the slr1-1 mutant restored GA sensitivity to normal
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	slender Rice, a Constitutive Gibberellin Response Mutant, Is Caused by a Null Mutation of the SLR1 Gene, an Ortholog of the Height-Regulating Gene GAI/RGA/RHT/D8	Thus, we demonstrate opposite GA response phenotypes depending on the type of mutations in SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	shoot	The Gibberellin Signaling Pathway Is Regulated by the Appearance and Disappearance of SLENDER RICE1 in Nuclei	Application of GA(3) to SLR1-GFP overproducers induced GA actions such as shoot elongation, downregulation of GA 20-oxidase expression, and upregulation of SLR1 expression linked with the disappearance of the nuclear SLR1-GFP protein
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	The rice (Oryza sativa) DELLA protein SLR1 acts as a repressor of gibberellin (GA) signaling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	In GA-insensitive and GA biosynthesis mutants, SLENDER RICE1 (SLR1) accumulates to high levels, and the severity of dwarfism is usually correlated with the level of SLR1 accumulation
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	The level of SLR1 protein in gid2 was decreased by loss of GID1 function or treatment with a GA biosynthesis inhibitor, and dwarfism was enhanced
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	These results indicate that derepression of SLR1 repressive activity can be accomplished by GA and GID1 alone and does not require F-box (GID2) function
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	Evidence for GA signaling without GID2 was also provided by the expression behavior of GA-regulated genes such as GA-20oxidase1, GID1, and SLR1 in the gid2 mutant
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	growth	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	When SLR1 proteins with various deletions were over-expressed in rice, the severity of dwarfism correlated with the transactivation activity observed in yeast, indicating that SLR1 suppresses plant growth through transactivation activity
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	growth	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	The C-terminal GRAS domain of SLR1 also exhibits a suppressive function on plant growth, possibly by directly or indirectly interacting with the promoter region of target genes
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice	Based on the constitutive GA response phenotype of slr1 mutants, SLR1 has been thought to be the sole DELLA-type protein suppressing GA signals in rice
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice	However, the repressive activity of SLRL1 against GA signaling was much weaker than a truncated SLR1 lacking the DELLA domain
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	This activity was suppressed by the GA-dependent GID1-SLR1 interaction, which may explain why GA responses are induced in the presence of GA
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The suppressive function of the rice DELLA protein SLR1 is dependent on its transcriptional activation activity	Our results indicate that the N-terminal region of SLR1 has two roles in GA signaling: interaction with GID1 and transactivation activity
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	The Gibberellin Signaling Pathway Is Regulated by the Appearance and Disappearance of SLENDER RICE1 in Nuclei	The slender rice1 mutant (slr1) shows a constitutive gibberellin (GA) response phenotype
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice	Furthermore, apart from the alteration of expression levels of the gibberellin biosynthesis genes, accumulation of SLR1 protein was found in the overexpressing transgenic plants, indicating that the expression level of EUI1 is implicated in both gibberellin-mediated SLR1 destruction and a feedback regulation in gibberellin biosynthesis
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice	The DELLA protein SLENDER RICE1 (SLR1) is a repressor of gibberellin (GA) signaling in rice (Oryza sativa), and most of the GA-associated responses are induced upon SLR1 degradation
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice	It is assumed that interaction between GIBBERELLIN INSENSITIVE DWARF1 (GID1) and the N-terminal DELLA/TVHYNP motif of SLR1 triggers F-box protein GID2-mediated SLR1 degradation
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	ethylene	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Together, these results demonstrate that Sub1A limits ethylene-promoted GA responsiveness during submergence by augmenting accumulation of the GA signaling repressors SLR1 and SLRL1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The Gibberellin Signaling Pathway Is Regulated by the Appearance and Disappearance of SLENDER RICE1 in Nuclei	SLR1-GFP worked in nuclei to repress the GA signaling pathway; its overproduction caused a dwarf phenotype
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The Gibberellin Signaling Pathway Is Regulated by the Appearance and Disappearance of SLENDER RICE1 in Nuclei	Application of GA(3) to SLR1-GFP overproducers induced GA actions such as shoot elongation, downregulation of GA 20-oxidase expression, and upregulation of SLR1 expression linked with the disappearance of the nuclear SLR1-GFP protein
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The Gibberellin Signaling Pathway Is Regulated by the Appearance and Disappearance of SLENDER RICE1 in Nuclei	The analyses revealed that the SLR1 protein can be divided into four parts: a GA signal perception domain located at the N terminus, a regulatory domain for its repression activity, a dimer formation domain essential for signal perception and repression activity, and a repression domain at the C terminus
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The Gibberellin Signaling Pathway Is Regulated by the Appearance and Disappearance of SLENDER RICE1 in Nuclei	We conclude that GA signal transduction is regulated by the appearance or disappearance of the nuclear SLR1 protein, which is controlled by the upstream GA signal
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice	Disturbing GA homeostasis affected the expression of the GA signaling genes GID1 (GIBBERELLIN INSENSITIVE DWARF 1), GID2 and SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	seed germination	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant	GA perception by GID1 causes SLR1 protein degradation involving the F-box protein GID2; this triggers GA-associated responses such as shoot elongation and seed germination
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	GA Perception and Signal Transduction: Molecular Interactions of the GA Receptor GID1 with GA and the DELLA Protein SLR1 in Rice	GA Perception and Signal Transduction: Molecular Interactions of the GA Receptor GID1 with GA and the DELLA Protein SLR1 in Rice
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	resistance	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	Together these findings favor a model whereby SLR1 acts as a positive regulator of hemibiotroph resistance in rice by integrating and amplifying SA- and JA-dependent defense signaling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	defense	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	Moreover, contrary to the differential effect of DELLA on the archetypal defense hormones salicylic acid (SA) and jasmonic acid (JA) in Arabidopsis, we demonstrate that the resistance-promoting effect of SLR1 is due at least in part to its ability to boost both SA- and JA-mediated rice defenses
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	defense	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	Together these findings favor a model whereby SLR1 acts as a positive regulator of hemibiotroph resistance in rice by integrating and amplifying SA- and JA-dependent defense signaling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	salicylic acid	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	salicylic acid	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	Moreover, contrary to the differential effect of DELLA on the archetypal defense hormones salicylic acid (SA) and jasmonic acid (JA) in Arabidopsis, we demonstrate that the resistance-promoting effect of SLR1 is due at least in part to its ability to boost both SA- and JA-mediated rice defenses
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	In a reciprocal manner, we found JA and SA treatment to interfere with GA metabolism and stabilize SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	immunity	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	innate immunity	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	jasmonic	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	jasmonic	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	Moreover, contrary to the differential effect of DELLA on the archetypal defense hormones salicylic acid (SA) and jasmonic acid (JA) in Arabidopsis, we demonstrate that the resistance-promoting effect of SLR1 is due at least in part to its ability to boost both SA- and JA-mediated rice defenses
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ja 	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	In a reciprocal manner, we found JA and SA treatment to interfere with GA metabolism and stabilize SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	jasmonic acid	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	jasmonic acid	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	Moreover, contrary to the differential effect of DELLA on the archetypal defense hormones salicylic acid (SA) and jasmonic acid (JA) in Arabidopsis, we demonstrate that the resistance-promoting effect of SLR1 is due at least in part to its ability to boost both SA- and JA-mediated rice defenses
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	GA	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	In a reciprocal manner, we found JA and SA treatment to interfere with GA metabolism and stabilize SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	JA	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	In a reciprocal manner, we found JA and SA treatment to interfere with GA metabolism and stabilize SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 sa 	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	In a reciprocal manner, we found JA and SA treatment to interfere with GA metabolism and stabilize SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	SA	The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice.	In a reciprocal manner, we found JA and SA treatment to interfere with GA metabolism and stabilize SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	defense	Gibberellin antagonizes jasmonate-induced defense against Meloidogyne graminicola in rice.	<U+00A0>graminicola, and SLR1 plays a central role in the JA-mediated defense response in rice against this nematode
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	defense response	Gibberellin antagonizes jasmonate-induced defense against Meloidogyne graminicola in rice.	<U+00A0>graminicola, and SLR1 plays a central role in the JA-mediated defense response in rice against this nematode
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Characterization of a new semi-dominant dwarf allele of SLR1 and its potential application in hybrid rice breeding.	 Expression of SLR1 and five key GA biosynthetic genes were disturbed in Slr1-d6 and the interaction between Slr1-d6 and GID1 was decreased
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	dwarf	Characterization of a new semi-dominant dwarf allele of SLR1 and its potential application in hybrid rice breeding.	Characterization of a new semi-dominant dwarf allele of SLR1 and its potential application in hybrid rice breeding.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	GA	Characterization of a new semi-dominant dwarf allele of SLR1 and its potential application in hybrid rice breeding.	 Expression of SLR1 and five key GA biosynthetic genes were disturbed in Slr1-d6 and the interaction between Slr1-d6 and GID1 was decreased
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	GA biosynthetic	Characterization of a new semi-dominant dwarf allele of SLR1 and its potential application in hybrid rice breeding.	 Expression of SLR1 and five key GA biosynthetic genes were disturbed in Slr1-d6 and the interaction between Slr1-d6 and GID1 was decreased
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	tiller	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	tiller	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.	 This discovery provides a molecular explanation for the coordinated control of plant height and tiller number in rice by GAs, SLR1 and MOC1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	height	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	height	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.	 This discovery provides a molecular explanation for the coordinated control of plant height and tiller number in rice by GAs, SLR1 and MOC1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	plant height	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	plant height	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.	 This discovery provides a molecular explanation for the coordinated control of plant height and tiller number in rice by GAs, SLR1 and MOC1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	tiller number	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	tiller number	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.	 This discovery provides a molecular explanation for the coordinated control of plant height and tiller number in rice by GAs, SLR1 and MOC1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	SLENDER RICE1 and Oryza sativa INDETERMINATE DOMAIN2 Regulating OsmiR396 Is Involved in Stem Elongation.	 The protein levels of OsIDD2 were unaffected by GA in the wild type and OsIDD2OE plants, implying that OSIDD2 promotes the expression of miR396 and likely requires the coactivator of SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	GA	SLENDER RICE1 and Oryza sativa INDETERMINATE DOMAIN2 Regulating OsmiR396 Is Involved in Stem Elongation.	 The protein levels of OsIDD2 were unaffected by GA in the wild type and OsIDD2OE plants, implying that OSIDD2 promotes the expression of miR396 and likely requires the coactivator of SLR1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	salt	PHYTOCHROME-INTERACTING FACTOR-LIKE14 and SLENDER RICE1 interaction controls seedling growth under salt stress 	 Furthermore, salt induces OsPIL14 turnover but enhances SLR1 accumulation
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	sheath	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	blight	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	abiotic stress	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	stress	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	biotic stress	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.	 OsGRAS39 was found to be a highly expressive gene under sheath blight infection and both abiotic stress treatments while OsGRAS8, OsSHR1 and OsSLR1 were also responsive
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	resistance	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	 SLR1-mediated broad-spectrum resistance was subverted by these independently evolved viral proteins, which all interrupted the functional crosstalk between SLR1 and jasmonic acid (JA) signaling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	ga	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	 Viral proteins encoded by different types of rice viruses all directly trigger the rapid degradation of SLR1 by promoting association with the GA receptor OsGID1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	 Viral proteins encoded by different types of rice viruses all directly trigger the rapid degradation of SLR1 by promoting association with the GA receptor OsGID1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	jasmonic	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	 SLR1-mediated broad-spectrum resistance was subverted by these independently evolved viral proteins, which all interrupted the functional crosstalk between SLR1 and jasmonic acid (JA) signaling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	jasmonic acid	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	 SLR1-mediated broad-spectrum resistance was subverted by these independently evolved viral proteins, which all interrupted the functional crosstalk between SLR1 and jasmonic acid (JA) signaling
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	GA	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	 Viral proteins encoded by different types of rice viruses all directly trigger the rapid degradation of SLR1 by promoting association with the GA receptor OsGID1
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	gibberellin	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Moreover, under the low-temperature (LT) condition, the osmkkk62/70 mutant had slightly higher Gibberellin (GA) contents, increased expression of GA biosynthesis genes, and lower protein level of OsSLR1 in anthers than those in WT
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	R protein	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Moreover, under the low-temperature (LT) condition, the osmkkk62/70 mutant had slightly higher Gibberellin (GA) contents, increased expression of GA biosynthesis genes, and lower protein level of OsSLR1 in anthers than those in WT
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	ga	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Moreover, under the low-temperature (LT) condition, the osmkkk62/70 mutant had slightly higher Gibberellin (GA) contents, increased expression of GA biosynthesis genes, and lower protein level of OsSLR1 in anthers than those in WT
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	 ga 	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Moreover, under the low-temperature (LT) condition, the osmkkk62/70 mutant had slightly higher Gibberellin (GA) contents, increased expression of GA biosynthesis genes, and lower protein level of OsSLR1 in anthers than those in WT
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	Gibberellin	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Moreover, under the low-temperature (LT) condition, the osmkkk62/70 mutant had slightly higher Gibberellin (GA) contents, increased expression of GA biosynthesis genes, and lower protein level of OsSLR1 in anthers than those in WT
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	GA	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Moreover, under the low-temperature (LT) condition, the osmkkk62/70 mutant had slightly higher Gibberellin (GA) contents, increased expression of GA biosynthesis genes, and lower protein level of OsSLR1 in anthers than those in WT
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	low-temperature	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Moreover, under the low-temperature (LT) condition, the osmkkk62/70 mutant had slightly higher Gibberellin (GA) contents, increased expression of GA biosynthesis genes, and lower protein level of OsSLR1 in anthers than those in WT
SLR1|OsGAI|OsSLR1	Os03g0707600	LOC_Os03g49990	GA biosynthesis	OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.	 Moreover, under the low-temperature (LT) condition, the osmkkk62/70 mutant had slightly higher Gibberellin (GA) contents, increased expression of GA biosynthesis genes, and lower protein level of OsSLR1 in anthers than those in WT
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	auxin	A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway	SMOS1 expression was induced by exogenous auxin treatment, and the auxin response element (AuxRE) of the SMOS1 promoter acts as a cis-motif through interaction with auxin response factor (ARF)
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	auxin	A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway	We propose that SMOS1 acts as an auxin-dependent regulator for cell expansion during organ size control, and that its function is conserved among land plants
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	organ size	A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway	In this study, we identified a new rice loss-of-function mutant, small organ size1 (smos1), that decreases the final size of various organs due to decreased cell size and abnormal microtubule orientation
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	organ size	A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway	Furthermore, a functional fluorophore-tagged SMOS1 was localized to the nucleus, supporting the role of SMOS1 as a transcriptional regulator for organ size control
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	organ size	A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway	We propose that SMOS1 acts as an auxin-dependent regulator for cell expansion during organ size control, and that its function is conserved among land plants
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	transcription factor	A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway	SMOS1 encodes an unusual APETALA2 (AP2)-type transcription factor with an imperfect AP2 domain, and its product belongs to the basal AINTEGUMENTA (ANT) lineage, including WRINKLED1 (WRI1) and ADAP
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	root	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	Quantitative analysis of cortical cell length and number indicates that shb has shorter, rather than fewer, cells in the root meristem until around the fifth day after sowing, from which the number of cortical cells is also reduced
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	transcription factor	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	SHB encodes an AP2/ERF transcription factor that directly activates transcription of the GA biosynthesis gene KS1
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	meristem	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	Quantitative analysis of cortical cell length and number indicates that shb has shorter, rather than fewer, cells in the root meristem until around the fifth day after sowing, from which the number of cortical cells is also reduced
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	ga	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	These defects can be either corrected by exogenous application of bioactive GA or induced in wild-type roots by a dose-dependent inhibitory effect of paclobutrazol on GA biosynthesis, suggesting that GA deficiency is the primary cause of shb mutant phenotypes
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	ga	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	SHB encodes an AP2/ERF transcription factor that directly activates transcription of the GA biosynthesis gene KS1
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	GA	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	These defects can be either corrected by exogenous application of bioactive GA or induced in wild-type roots by a dose-dependent inhibitory effect of paclobutrazol on GA biosynthesis, suggesting that GA deficiency is the primary cause of shb mutant phenotypes
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	GA	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	SHB encodes an AP2/ERF transcription factor that directly activates transcription of the GA biosynthesis gene KS1
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	GA deficiency	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	These defects can be either corrected by exogenous application of bioactive GA or induced in wild-type roots by a dose-dependent inhibitory effect of paclobutrazol on GA biosynthesis, suggesting that GA deficiency is the primary cause of shb mutant phenotypes
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	GA biosynthesis	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	These defects can be either corrected by exogenous application of bioactive GA or induced in wild-type roots by a dose-dependent inhibitory effect of paclobutrazol on GA biosynthesis, suggesting that GA deficiency is the primary cause of shb mutant phenotypes
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	GA biosynthesis	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	SHB encodes an AP2/ERF transcription factor that directly activates transcription of the GA biosynthesis gene KS1
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	root meristem	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation	Thus, root meristem size in rice is modulated by SHB-mediated GA biosynthesis that regulates the elongation and proliferation of meristem cells in a developmental stage-specific manner.
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	root meristem size	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation	Thus, root meristem size in rice is modulated by SHB-mediated GA biosynthesis that regulates the elongation and proliferation of meristem cells in a developmental stage-specific manner.
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	Gibberellin	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation	SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	organ size	The RLA1/SMOS1 Transcription Factor Functions with OsBZR1 to Regulate Brassinosteroid Signaling and Rice Architecture.	RLA1 was identical to the previously reported SMALL ORGAN SIZE 1 (SMOS1) which was cloned from another allele
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	nitrogen	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	Increased NGR5 activity consequently uncouples tillering from nitrogen regulation, boosting rice yield at low nitrogen fertilization levels
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	nitrogen	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	NGR5 thus enables enhanced nitrogen use efficiency for improved future agricultural sustainability and food security
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	transcription factor	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	We found that genome-wide promotion of histone H3 lysine 27 trimethylation (H3K27me3) enables nitrogen-induced stimulation of rice tillering: APETALA2-domain transcription factor NGR5 (NITROGEN-MEDIATED TILLER GROWTH RESPONSE 5) facilitates nitrogen-dependent recruitment of polycomb repressive complex 2 to repress branching-inhibitory genes via H3K27me3 modification
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	tillering	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	Increased NGR5 activity consequently uncouples tillering from nitrogen regulation, boosting rice yield at low nitrogen fertilization levels
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	growth	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	We found that genome-wide promotion of histone H3 lysine 27 trimethylation (H3K27me3) enables nitrogen-induced stimulation of rice tillering: APETALA2-domain transcription factor NGR5 (NITROGEN-MEDIATED TILLER GROWTH RESPONSE 5) facilitates nitrogen-dependent recruitment of polycomb repressive complex 2 to repress branching-inhibitory genes via H3K27me3 modification
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	tiller	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	We found that genome-wide promotion of histone H3 lysine 27 trimethylation (H3K27me3) enables nitrogen-induced stimulation of rice tillering: APETALA2-domain transcription factor NGR5 (NITROGEN-MEDIATED TILLER GROWTH RESPONSE 5) facilitates nitrogen-dependent recruitment of polycomb repressive complex 2 to repress branching-inhibitory genes via H3K27me3 modification
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	gibberellin	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	NGR5 is a target of gibberellin receptor GIBBERELLIN INSENSITIVE DWARF1 (GID1)-promoted proteasomal destruction
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	yield	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	Increased NGR5 activity consequently uncouples tillering from nitrogen regulation, boosting rice yield at low nitrogen fertilization levels
SMOS1|SHB|RLA1|NGR5	Os05g0389000	LOC_Os05g32270	Gibberellin	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	NGR5 is a target of gibberellin receptor GIBBERELLIN INSENSITIVE DWARF1 (GID1)-promoted proteasomal destruction
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative stress	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	Overexpression (OE) of SNAC3 in rice resulted in enhanced tolerance to high temperature, drought, and oxidative stress caused by methyl viologen (MV), whereas suppression of SNAC3 by RNAi resulted in increased sensitivity to these stresses
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	Here, a stress-responsive NAC gene, SNAC3 (ONAC003, LOC_Os01g09550), conferring drought and heat tolerance in rice is reported
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	These results suggest that SNAC3 plays important roles in stress responses, and it is likely to be useful for engineering crops with improved tolerance to heat and drought stress
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	salinity	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	SNAC3 was ubiquitously expressed and its transcript level was induced by drought, high temperature, salinity stress, and abscisic acid (ABA) treatment
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	tolerance	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	tolerance	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	Here, a stress-responsive NAC gene, SNAC3 (ONAC003, LOC_Os01g09550), conferring drought and heat tolerance in rice is reported
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	tolerance	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	Overexpression (OE) of SNAC3 in rice resulted in enhanced tolerance to high temperature, drought, and oxidative stress caused by methyl viologen (MV), whereas suppression of SNAC3 by RNAi resulted in increased sensitivity to these stresses
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	tolerance	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	The SNAC3-OE transgenic plants exhibited significantly lower levels of H2O2, malondiadehyde (MDA), and relative electrolyte leakage than the wild-type control under heat stress conditions, implying that SNAC3 may confer stress tolerance by modulating reactive oxygen species (ROS) homeostasis
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	tolerance	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	These results suggest that SNAC3 plays important roles in stress responses, and it is likely to be useful for engineering crops with improved tolerance to heat and drought stress
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	transcription factor	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	Overexpression (OE) of SNAC3 in rice resulted in enhanced tolerance to high temperature, drought, and oxidative stress caused by methyl viologen (MV), whereas suppression of SNAC3 by RNAi resulted in increased sensitivity to these stresses
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought tolerance	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	salinity stress	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	SNAC3 was ubiquitously expressed and its transcript level was induced by drought, high temperature, salinity stress, and abscisic acid (ABA) treatment
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	Overexpression (OE) of SNAC3 in rice resulted in enhanced tolerance to high temperature, drought, and oxidative stress caused by methyl viologen (MV), whereas suppression of SNAC3 by RNAi resulted in increased sensitivity to these stresses
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	The SNAC3-OE transgenic plants exhibited significantly lower levels of H2O2, malondiadehyde (MDA), and relative electrolyte leakage than the wild-type control under heat stress conditions, implying that SNAC3 may confer stress tolerance by modulating reactive oxygen species (ROS) homeostasis
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	These results suggest that SNAC3 plays important roles in stress responses, and it is likely to be useful for engineering crops with improved tolerance to heat and drought stress
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	homeostasis	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	The SNAC3-OE transgenic plants exhibited significantly lower levels of H2O2, malondiadehyde (MDA), and relative electrolyte leakage than the wild-type control under heat stress conditions, implying that SNAC3 may confer stress tolerance by modulating reactive oxygen species (ROS) homeostasis
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought stress	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	These results suggest that SNAC3 plays important roles in stress responses, and it is likely to be useful for engineering crops with improved tolerance to heat and drought stress
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	abscisic acid	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	SNAC3 was ubiquitously expressed and its transcript level was induced by drought, high temperature, salinity stress, and abscisic acid (ABA) treatment
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress tolerance	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	The SNAC3-OE transgenic plants exhibited significantly lower levels of H2O2, malondiadehyde (MDA), and relative electrolyte leakage than the wild-type control under heat stress conditions, implying that SNAC3 may confer stress tolerance by modulating reactive oxygen species (ROS) homeostasis
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress response	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	These results suggest that SNAC3 plays important roles in stress responses, and it is likely to be useful for engineering crops with improved tolerance to heat and drought stress
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	reactive oxygen species	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	reactive oxygen species	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	The SNAC3-OE transgenic plants exhibited significantly lower levels of H2O2, malondiadehyde (MDA), and relative electrolyte leakage than the wild-type control under heat stress conditions, implying that SNAC3 may confer stress tolerance by modulating reactive oxygen species (ROS) homeostasis
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	transcription factor	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	resistance	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	resistance	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Overexpression of ONAC066 quantitatively enhances resistance to blast disease and bacterial blight in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	resistance	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Taken together, our results suggest that ONAC066 positively regulates rice resistance to blast and bacterial blight, and ONAC066 exerts its functions on disease resistance by modulating of ABA signaling pathway, sugars and amino acids accumulation in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Consistently, lower endogenous ABA levels are identified in ONAC066 overexpressing plants compared with wild-type plants before and after blast inoculation, while no significant differences are observed for the SA and JA levels
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Taken together, our results suggest that ONAC066 positively regulates rice resistance to blast and bacterial blight, and ONAC066 exerts its functions on disease resistance by modulating of ABA signaling pathway, sugars and amino acids accumulation in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	disease	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	disease	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Overexpression of ONAC066 quantitatively enhances resistance to blast disease and bacterial blight in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	disease	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Taken together, our results suggest that ONAC066 positively regulates rice resistance to blast and bacterial blight, and ONAC066 exerts its functions on disease resistance by modulating of ABA signaling pathway, sugars and amino acids accumulation in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	salicylic acid	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Further analysis shows that overexpression of ONAC066 remarkably suppresses the expression of ABA-related genes, whereas there  are no obvious differences for salicylic acid (SA) and jasmonic acid (JA)-related genes between wild-type and ONAC066 overexpressing plants
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	blast	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Here we report that the NAC gene ONAC066 (LOC_Os01g09550) is significantly activated by rice blast infection
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	blast	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Overexpression of ONAC066 quantitatively enhances resistance to blast disease and bacterial blight in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	blast	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Consistently, lower endogenous ABA levels are identified in ONAC066 overexpressing plants compared with wild-type plants before and after blast inoculation, while no significant differences are observed for the SA and JA levels
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	blast	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Taken together, our results suggest that ONAC066 positively regulates rice resistance to blast and bacterial blight, and ONAC066 exerts its functions on disease resistance by modulating of ABA signaling pathway, sugars and amino acids accumulation in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	disease resistance	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	disease resistance	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Taken together, our results suggest that ONAC066 positively regulates rice resistance to blast and bacterial blight, and ONAC066 exerts its functions on disease resistance by modulating of ABA signaling pathway, sugars and amino acids accumulation in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	nucleus	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	ONAC066 is ubiquitously expressed and this protein is localized in the nucleus
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	jasmonic	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Further analysis shows that overexpression of ONAC066 remarkably suppresses the expression of ABA-related genes, whereas there  are no obvious differences for salicylic acid (SA) and jasmonic acid (JA)-related genes between wild-type and ONAC066 overexpressing plants
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	jasmonic acid	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Further analysis shows that overexpression of ONAC066 remarkably suppresses the expression of ABA-related genes, whereas there  are no obvious differences for salicylic acid (SA) and jasmonic acid (JA)-related genes between wild-type and ONAC066 overexpressing plants
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Consistently, lower endogenous ABA levels are identified in ONAC066 overexpressing plants compared with wild-type plants before and after blast inoculation, while no significant differences are observed for the SA and JA levels
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Taken together, our results suggest that ONAC066 positively regulates rice resistance to blast and bacterial blight, and ONAC066 exerts its functions on disease resistance by modulating of ABA signaling pathway, sugars and amino acids accumulation in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ja	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Consistently, lower endogenous ABA levels are identified in ONAC066 overexpressing plants compared with wild-type plants before and after blast inoculation, while no significant differences are observed for the SA and JA levels
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	blight	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Overexpression of ONAC066 quantitatively enhances resistance to blast disease and bacterial blight in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	JA	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Consistently, lower endogenous ABA levels are identified in ONAC066 overexpressing plants compared with wild-type plants before and after blast inoculation, while no significant differences are observed for the SA and JA levels
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	sa	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Consistently, lower endogenous ABA levels are identified in ONAC066 overexpressing plants compared with wild-type plants before and after blast inoculation, while no significant differences are observed for the SA and JA levels
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	SA	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Consistently, lower endogenous ABA levels are identified in ONAC066 overexpressing plants compared with wild-type plants before and after blast inoculation, while no significant differences are observed for the SA and JA levels
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	pathogen	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Moreover, the metabolomic study reveals that the ONAC066 overexpressing plants accumulated higher contents of soluble sugars and amino acids both before and after pathogen attack, when compared to wild-type plants
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	blast disease	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Overexpression of ONAC066 quantitatively enhances resistance to blast disease and bacterial blight in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	abscisic acid	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Exogenous abscisic acid (ABA) strongly activates the transcription of ONAC066 in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	bacterial blight	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Overexpression of ONAC066 quantitatively enhances resistance to blast disease and bacterial blight in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	bacterial blight	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice	Taken together, our results suggest that ONAC066 positively regulates rice resistance to blast and bacterial blight, and ONAC066 exerts its functions on disease resistance by modulating of ABA signaling pathway, sugars and amino acids accumulation in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	transcription factor	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Functional analyses using overexpression and RNAi-mediated suppression transgenic lines demonstrate that ONAC066 is a positive regulator of drought and oxidative stress tolerance in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Functional analyses using overexpression and RNAi-mediated suppression transgenic lines demonstrate that ONAC066 is a positive regulator of drought and oxidative stress tolerance in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	tolerance	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	tolerance	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	tolerance	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Functional analyses using overexpression and RNAi-mediated suppression transgenic lines demonstrate that ONAC066 is a positive regulator of drought and oxidative stress tolerance in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	oxidative	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Functional analyses using overexpression and RNAi-mediated suppression transgenic lines demonstrate that ONAC066 is a positive regulator of drought and oxidative stress tolerance in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	abiotic stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	ONAC066 is a nucleus-localized transcription activator that can respond to multiple abiotic stress factors
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	ONAC066 is a nucleus-localized transcription activator that can respond to multiple abiotic stress factors
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Functional analyses using overexpression and RNAi-mediated suppression transgenic lines demonstrate that ONAC066 is a positive regulator of drought and oxidative stress tolerance in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	biotic stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	ONAC066 is a nucleus-localized transcription activator that can respond to multiple abiotic stress factors
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	abscisic acid	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Expression of ONAC066 was significantly induced by PEG, NaCl, H2O2 and abscisic acid (ABA)
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	ABA	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	water loss	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	water loss	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	transcription activator	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	ONAC066 was localized in nuclei of cells when transiently expressed in Nicotiana benthamiana and is a transcription activator with the binding ability to NAC recognition sequence (NACRS) and AtJUB1 binding site (JBS)
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	transcription activator	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	ONAC066 is a nucleus-localized transcription activator that can respond to multiple abiotic stress factors
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress response	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress tolerance	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress tolerance	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress tolerance	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Functional analyses using overexpression and RNAi-mediated suppression transgenic lines demonstrate that ONAC066 is a positive regulator of drought and oxidative stress tolerance in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	reactive oxygen species	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought and oxidative stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought and oxidative stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Overexpression of ONAC066 in transgenic rice improved drought and oxidative stress tolerance and increased ABA sensitivity, accompanied with decreased rate of water loss, increased contents of proline and soluble sugars, decreased accumulation of reactive oxygen species (ROS) and upregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought and oxidative stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	By contrast, RNAi-mediated suppression of ONAC066 attenuated drought and oxidative stress tolerance and decreased ABA sensitivity, accompanied with increased rate of water loss, decreased contents of proline and soluble sugars, elevated accumulation of ROS and downregulated expression of stress-related genes under drought stress condition
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought and oxidative stress	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	Functional analyses using overexpression and RNAi-mediated suppression transgenic lines demonstrate that ONAC066 is a positive regulator of drought and oxidative stress tolerance in rice
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	transcription factor	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Furthermore, knockout of OsNAC006 using the CRISPR-Cas9 system resulted in drought and heat sensitivity
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	drought	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Our findings elucidate the important role of OsNAC006 in drought responses, and provide valuable information for genetic manipulation to enhance stress tolerance in future plant breeding programs
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	tolerance	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Our findings elucidate the important role of OsNAC006 in drought responses, and provide valuable information for genetic manipulation to enhance stress tolerance in future plant breeding programs
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	gibberellin	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Herein, we discovered that the TF OsNAC006 is constitutively expressed in rice, and regulated by H2O2, cold, heat, abscisic acid (ABA), indole-3-acetic acid (IAA), gibberellin (GA), NaCl, and polyethylene glycol (PEG) 6000 treatments
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Our findings elucidate the important role of OsNAC006 in drought responses, and provide valuable information for genetic manipulation to enhance stress tolerance in future plant breeding programs
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	abscisic acid	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Herein, we discovered that the TF OsNAC006 is constitutively expressed in rice, and regulated by H2O2, cold, heat, abscisic acid (ABA), indole-3-acetic acid (IAA), gibberellin (GA), NaCl, and polyethylene glycol (PEG) 6000 treatments
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	breeding	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Our findings elucidate the important role of OsNAC006 in drought responses, and provide valuable information for genetic manipulation to enhance stress tolerance in future plant breeding programs
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	Gibberellin	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Herein, we discovered that the TF OsNAC006 is constitutively expressed in rice, and regulated by H2O2, cold, heat, abscisic acid (ABA), indole-3-acetic acid (IAA), gibberellin (GA), NaCl, and polyethylene glycol (PEG) 6000 treatments
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	stress tolerance	Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Our findings elucidate the important role of OsNAC006 in drought responses, and provide valuable information for genetic manipulation to enhance stress tolerance in future plant breeding programs
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	immunity	ONAC066, A Stress-Responsive NAC Transcription Activator, Positively Contributes to Rice Immunity Against Magnaprothe oryzae Through Modulating Expression of OsWRKY62 and Three Cytochrome P450 Genes.	The present study investigated the function and mechanism of ONAC066 in rice immunity
SNAC3|ONAC066|OsNAC006	Os01g0191300	LOC_Os01g09550	transcription activator	ONAC066, A Stress-Responsive NAC Transcription Activator, Positively Contributes to Rice Immunity Against Magnaprothe oryzae Through Modulating Expression of OsWRKY62 and Three Cytochrome P450 Genes.	ONAC066 shows transcription activator activity that depends on its C-terminal region in rice cells
SNB|SSH1	Os07g0235800	LOC_Os07g13170	meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	Here, we report the identification of the SUPERNUMERARY BRACT (SNB) gene controlling the transition from spikelet meristem to floral meristem and the floral organ development
SNB|SSH1	Os07g0235800	LOC_Os07g13170	meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	SNB is expressed in all the examined tissues, but most strongly in the newly emerging spikelet meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	In SNB knockout plants, the transition from spikelet meristems to floral meristems is delayed, resulting in the production of multiple rudimentary glumes in an alternative phyllotaxy
SNB|SSH1	Os07g0235800	LOC_Os07g13170	meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	These phenotypes suggest that snb is a heterochronic mutant, affecting the phase transition of spikelet meristems, the pattern formation of floral organs and spikelet meristem determinancy
SNB|SSH1	Os07g0235800	LOC_Os07g13170	inflorescence architecture	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	inflorescence architecture	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	Here, we report the identification of the SUPERNUMERARY BRACT (SNB) gene controlling the transition from spikelet meristem to floral meristem and the floral organ development
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	SNB is expressed in all the examined tissues, but most strongly in the newly emerging spikelet meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	In SNB knockout plants, the transition from spikelet meristems to floral meristems is delayed, resulting in the production of multiple rudimentary glumes in an alternative phyllotaxy
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	These phenotypes suggest that snb is a heterochronic mutant, affecting the phase transition of spikelet meristems, the pattern formation of floral organs and spikelet meristem determinancy
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	We previously reported that SUPERNUMERARY BRACT (SNB) regulates the transition of spikelet meristems into floral meristems in rice (Oryza sativa)
SNB|SSH1	Os07g0235800	LOC_Os07g13170	inflorescence	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	inflorescence	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
SNB|SSH1	Os07g0235800	LOC_Os07g13170	panicle	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	We previously reported that SUPERNUMERARY BRACT (SNB) regulates the transition of spikelet meristems into floral meristems in rice (Oryza sativa)
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
SNB|SSH1	Os07g0235800	LOC_Os07g13170	meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	We previously reported that SUPERNUMERARY BRACT (SNB) regulates the transition of spikelet meristems into floral meristems in rice (Oryza sativa)
SNB|SSH1	Os07g0235800	LOC_Os07g13170	meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
SNB|SSH1	Os07g0235800	LOC_Os07g13170	meristem	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	Here, we report the identification of the SUPERNUMERARY BRACT (SNB) gene controlling the transition from spikelet meristem to floral meristem and the floral organ development
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral meristem	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	In SNB knockout plants, the transition from spikelet meristems to floral meristems is delayed, resulting in the production of multiple rudimentary glumes in an alternative phyllotaxy
SNB|SSH1	Os07g0235800	LOC_Os07g13170	architecture	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	architecture	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	We previously reported that SUPERNUMERARY BRACT (SNB) regulates the transition of spikelet meristems into floral meristems in rice (Oryza sativa)
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Expression analyses showed that SNB and OsIDS1 are required for spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	We previously reported that SUPERNUMERARY BRACT (SNB) regulates the transition of spikelet meristems into floral meristems in rice (Oryza sativa)
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Here we demonstrated that SNB and Oryza sativa INDETERMINATE SPIKELET 1 (OsIDS1) together play important roles in inflorescence architecture and the establishment of floral meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	In snb osids1 double mutants, the numbers of branches and spikelets within a panicle are significantly decreased, and the transition to a floral meristem is further delayed compared with the snb single mutant
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	Here, we report the identification of the SUPERNUMERARY BRACT (SNB) gene controlling the transition from spikelet meristem to floral meristem and the floral organ development
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	In SNB knockout plants, the transition from spikelet meristems to floral meristems is delayed, resulting in the production of multiple rudimentary glumes in an alternative phyllotaxy
SNB|SSH1	Os07g0235800	LOC_Os07g13170	floral	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	These phenotypes suggest that snb is a heterochronic mutant, affecting the phase transition of spikelet meristems, the pattern formation of floral organs and spikelet meristem determinancy
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	Here, we report the identification of the SUPERNUMERARY BRACT (SNB) gene controlling the transition from spikelet meristem to floral meristem and the floral organ development
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	SNB is expressed in all the examined tissues, but most strongly in the newly emerging spikelet meristems
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	In SNB knockout plants, the transition from spikelet meristems to floral meristems is delayed, resulting in the production of multiple rudimentary glumes in an alternative phyllotaxy
SNB|SSH1	Os07g0235800	LOC_Os07g13170	spikelet	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem	These phenotypes suggest that snb is a heterochronic mutant, affecting the phase transition of spikelet meristems, the pattern formation of floral organs and spikelet meristem determinancy
SNB|SSH1	Os07g0235800	LOC_Os07g13170	vascular bundle	The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size.	A C-to-A point mutation in the 9th intron of SNB altered the splicing of its mRNA, causing the reduced shattering of the ssh1 mutant by altering the development of the abscission layer and vascular bundle at the junction between the seed and the pedicel
SNB|SSH1	Os07g0235800	LOC_Os07g13170	grain	The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size.	In addition, the ssh1 mutant had larger seeds and a higher grain weight, resulting from its increased elongation of the glume longitudinal cells
SNB|SSH1	Os07g0235800	LOC_Os07g13170	development	The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size.	A C-to-A point mutation in the 9th intron of SNB altered the splicing of its mRNA, causing the reduced shattering of the ssh1 mutant by altering the development of the abscission layer and vascular bundle at the junction between the seed and the pedicel
SNB|SSH1	Os07g0235800	LOC_Os07g13170	seed	The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size.	A C-to-A point mutation in the 9th intron of SNB altered the splicing of its mRNA, causing the reduced shattering of the ssh1 mutant by altering the development of the abscission layer and vascular bundle at the junction between the seed and the pedicel
SNB|SSH1	Os07g0235800	LOC_Os07g13170	grain weight	The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size.	In addition, the ssh1 mutant had larger seeds and a higher grain weight, resulting from its increased elongation of the glume longitudinal cells
SNB|SSH1	Os07g0235800	LOC_Os07g13170	shattering	The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size.	A C-to-A point mutation in the 9th intron of SNB altered the splicing of its mRNA, causing the reduced shattering of the ssh1 mutant by altering the development of the abscission layer and vascular bundle at the junction between the seed and the pedicel
SNG1|OsHXK3	Os01g0940100	LOC_Os01g71320	grain size	OsHXK3 encodes a hexokinase-like protein that positively regulates grain size in rice	OsHXK3 encodes a hexokinase-like protein that positively regulates grain size in rice
SNG1|OsHXK3	Os01g0940100	LOC_Os01g71320	grain size	OsHXK3 encodes a hexokinase-like protein that positively regulates grain size in rice	Scanning electron microscopy analysis revealed that OsHXK3 affects grain size by promoting spikelet husk cell expansion.
Snl6	Os01g0639200	LOC_Os01g45200	Xoo	Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae	We show that Snl6 is required for NH1-mediated resistance to Xoo.
Snl6	Os01g0639200	LOC_Os01g45200	resistance	Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae	While both lines are susceptible to inoculation with Xoo, snl6-RGT plants developed longer lesions suggesting that Snl6 contributes to resistance in Nipponbare
SNORKEL1	None	None	gibberellin	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water	The products of SNORKEL1 and SNORKEL2 then trigger remarkable internode elongation via gibberellin
SNORKEL1	None	None	ethylene	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water	Here we show the molecular mechanism of deepwater response through the identification of the genes SNORKEL1 and SNORKEL2, which trigger deepwater response by encoding ethylene response factors involved in ethylene signalling
SNORKEL1	None	None	ethylene	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water
SNORKEL2	None	None	ethylene	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water	Here we show the molecular mechanism of deepwater response through the identification of the genes SNORKEL1 and SNORKEL2, which trigger deepwater response by encoding ethylene response factors involved in ethylene signalling
SNORKEL2	None	None	ethylene	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water
SNORKEL2	None	None	gibberellin	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water	The products of SNORKEL1 and SNORKEL2 then trigger remarkable internode elongation via gibberellin
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	growth	Coordinated responses to oxygen and sugar deficiency allow rice seedlings to tolerate flooding	CIPK15 regulates the plant global energy and stress sensor SnRK1A (Snf1-related protein kinase 1) and links O(2)-deficiency signals to the SnRK1-dependent sugar-sensing cascade to regulate sugar and energy production and to enable rice growth under floodwater
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	seedling	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice	Our studies demonstrated that SnRK1A is an important intermediate in the sugar signaling cascade, functioning upstream from the interaction between MYBS1 and alphaAmy3 SRC and playing a key role in regulating seed germination and seedling growth in rice
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	seedling	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	seed	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice	Our studies demonstrated that SnRK1A is an important intermediate in the sugar signaling cascade, functioning upstream from the interaction between MYBS1 and alphaAmy3 SRC and playing a key role in regulating seed germination and seedling growth in rice
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	seed	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	growth	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice	Our studies demonstrated that SnRK1A is an important intermediate in the sugar signaling cascade, functioning upstream from the interaction between MYBS1 and alphaAmy3 SRC and playing a key role in regulating seed germination and seedling growth in rice
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	growth	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	seed germination	The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice	Our studies demonstrated that SnRK1A is an important intermediate in the sugar signaling cascade, functioning upstream from the interaction between MYBS1 and alphaAmy3 SRC and playing a key role in regulating seed germination and seedling growth in rice
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	growth	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	 OsSnRK1a overexpression interfered with normal growth and development and increased resistance against both (hemi)biotrophic and necrotrophic pathogens, while OsSnRK1a silencing in RNAi lines increased susceptibility
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	resistance	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	resistance	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	 OsSnRK1a overexpression interfered with normal growth and development and increased resistance against both (hemi)biotrophic and necrotrophic pathogens, while OsSnRK1a silencing in RNAi lines increased susceptibility
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	development	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	 OsSnRK1a overexpression interfered with normal growth and development and increased resistance against both (hemi)biotrophic and necrotrophic pathogens, while OsSnRK1a silencing in RNAi lines increased susceptibility
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	defense	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	 OsSnRK1a overexpression positively affected the salicylic acid pathway and boosted the jasmonate-mediated defense response after inoculation with the blast fungus Pyricularia oryzae
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	defense response	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	 OsSnRK1a overexpression positively affected the salicylic acid pathway and boosted the jasmonate-mediated defense response after inoculation with the blast fungus Pyricularia oryzae
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	disease	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	salicylic acid	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	 OsSnRK1a overexpression positively affected the salicylic acid pathway and boosted the jasmonate-mediated defense response after inoculation with the blast fungus Pyricularia oryzae
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	blast	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	 OsSnRK1a overexpression positively affected the salicylic acid pathway and boosted the jasmonate-mediated defense response after inoculation with the blast fungus Pyricularia oryzae
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	disease resistance	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	immunity	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	 Together these findings strongly suggest OsSnRK1a to be involved in plant basal immunity and favor a model whereby OsSnRK1a acts as a master switch that regulates growth-immunity trade-offs
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	broad-spectrum disease resistance	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	sheath	Sucrose nonfermenting-1-related protein kinase 1 regulates sheath-to-panicle transport of nonstructural carbohydrates during rice grain filling.	 Accelerated NSC transport was accompanied by increased levels of OsSnRK1a mRNA expression, SnRK1a protein expression, catalytic subunit phosphorylation of SnRK1, and SnRK1 activity, indicating that SnRK1 activity plays an important role in sheath NSC transport
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	sucrose	Sucrose nonfermenting-1-related protein kinase 1 regulates sheath-to-panicle transport of nonstructural carbohydrates during rice grain filling.	 Since SnRK1 activity is mostly regulated by OsSnRK1a transcription in response to low sucrose content, we constructed an snrk1a mutant to verify the function of SnRK1 in NSC transport
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	resistance	SnRK1A-mediated phosphorylation of a cytosolic ATPase positively regulates rice innate immunity and is inhibited by Ustilaginoidea virens effector SCRE1.	 SnRK1A is activated by pathogen-associated molecular patterns and positively regulates plant immune responses and disease resistance
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	disease	SnRK1A-mediated phosphorylation of a cytosolic ATPase positively regulates rice innate immunity and is inhibited by Ustilaginoidea virens effector SCRE1.	 SnRK1A is activated by pathogen-associated molecular patterns and positively regulates plant immune responses and disease resistance
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	disease resistance	SnRK1A-mediated phosphorylation of a cytosolic ATPase positively regulates rice innate immunity and is inhibited by Ustilaginoidea virens effector SCRE1.	 SnRK1A is activated by pathogen-associated molecular patterns and positively regulates plant immune responses and disease resistance
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	ATPase	SnRK1A-mediated phosphorylation of a cytosolic ATPase positively regulates rice innate immunity and is inhibited by Ustilaginoidea virens effector SCRE1.	 As a central mediator of energy signaling, SnRK1A interacts with and phosphorylates XB24 at Thr83 residue to promote ATPase activity
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	ATPase	SnRK1A-mediated phosphorylation of a cytosolic ATPase positively regulates rice innate immunity and is inhibited by Ustilaginoidea virens effector SCRE1.	 Meanwhile, SCRE1 outcompetes SnRK1A for XB24 binding, and thereby suppresses SnRK1A-mediated phosphorylation and ATPase activity of XB24
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	immune response	SnRK1A-mediated phosphorylation of a cytosolic ATPase positively regulates rice innate immunity and is inhibited by Ustilaginoidea virens effector SCRE1.	 SnRK1A is activated by pathogen-associated molecular patterns and positively regulates plant immune responses and disease resistance
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	protoplasts	SNF1-Related Protein Kinase 1 Activity Represses the Canonical Translational Machinery.	 In this study, using translational reporter constructs transfected in Arabidopsis protoplasts we showed that the expression of OsSnRK1A and AtSnRK1
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	energy homeostasis	SNF1-Related Protein Kinase 1 Activity Represses the Canonical Translational Machinery	Taken together, these results suggest that OsSnRK1A and AtSnRK1.1 suppress protein translation to maintain energy homeostasis.
SnRK1A|OsSnRK1a|OsSnRK1A1	Os05g0530500	LOC_Os05g45420	protein translation	SNF1-Related Protein Kinase 1 Activity Represses the Canonical Translational Machinery	Taken together, these results suggest that OsSnRK1A and AtSnRK1.1 suppress protein translation to maintain energy homeostasis.
SnRK1B|OsK4|OsSnRK1D	Os08g0484600	LOC_Os08g37800	Kinase	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.
SodCc7|OsSOD1|OsCSD4	Os03g0351500	LOC_Os03g22810	zinc	Molecular Cloning of the Gene (SodCc7) that Encodes a Cytosolic Copper/Zinc-Superoxide  Dismutase from Rice	Molecular Cloning of the Gene (SodCc7) that Encodes a Cytosolic Copper/Zinc-Superoxide  Dismutase from Rice
SodCc7|OsSOD1|OsCSD4	Os03g0351500	LOC_Os03g22810	resistance	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
SodCc7|OsSOD1|OsCSD4	Os03g0351500	LOC_Os03g22810	salt	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
SodCc7|OsSOD1|OsCSD4	Os03g0351500	LOC_Os03g22810	oxidative	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
SodCc7|OsSOD1|OsCSD4	Os03g0351500	LOC_Os03g22810	salt stress	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
SodCc7|OsSOD1|OsCSD4	Os03g0351500	LOC_Os03g22810	stress	Loss of Rice PARAQUAT TOLERANCE 3 Confers Enhanced Resistance to Abiotic Stresses and Increases Grain Yield in Field	The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1, and OsSOD1
SODX	Os11g0203300	None	disease resistance	Osa-miR398b boosts H 2 O 2 production and rice blast disease-resistance via multiple superoxide dismutases	These data indicate that upon M. oryzae infection, miR398b silences target genes CSD1, CSD2 and SODX, which in turn triggers upregulation of other SOD family members resulting in higher total SOD enzyme activity, leading to higher H2O2 production and enhanced blast disease resistance.
SOR1	Os04g0101800	LOC_Os04g01160	root	Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.)	Segregation analyses by using an F2 population derived from a cross between the soil-surface rooting mutant and wild-type Nipponbare indicated that the trait was controlled by a single recessive gene, designated as sor1
SOR1	Os04g0101800	LOC_Os04g01160	root	Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.)	CONCLUSION: These results suggest that sor1, a rice mutant causing soil-surface rooting and altered root gravitropic response, is allelic to Os04g0101800, and that a 33-bp deletion in the coding region of this gene causes the mutant phenotypes
SOR1	Os04g0101800	LOC_Os04g01160	root	E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.	E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.
SOR1	Os04g0101800	LOC_Os04g01160	ethylene	E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.	E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.
SOR1	Os04g0101800	LOC_Os04g01160	Ubiquitin	E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.	E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.
SOR1	Os04g0101800	LOC_Os04g01160	ethylene response	E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.	E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.
SP1	Os11g0235200	LOC_Os11g12740	nitrate	Short panicle1 encodes a putative PTR family transporter and determines rice panicle size	Phylogenetic analysis implies that SP1 might be a nitrate transporter
SP1	Os11g0235200	LOC_Os11g12740	nitrate	Short panicle1 encodes a putative PTR family transporter and determines rice panicle size	However, neither nitrate transporter activity nor any other compounds transported by known PTR proteins could be detected in either a Xenopus oocyte or yeast system, in our study, suggesting that SP1 may need other component(s) to be able to function as a transporter, or that it transports unknown substrates in the monocotyledonous rice plant
SP1	Os11g0235200	LOC_Os11g12740	transporter	Short panicle1 encodes a putative PTR family transporter and determines rice panicle size	Gene cloning and characterization indicate that SP1 encodes a putative transporter that belongs to the peptide transporter (PTR) family
SP1	Os11g0235200	LOC_Os11g12740	transporter	Short panicle1 encodes a putative PTR family transporter and determines rice panicle size	Phylogenetic analysis implies that SP1 might be a nitrate transporter
SP1	Os11g0235200	LOC_Os11g12740	transporter	Short panicle1 encodes a putative PTR family transporter and determines rice panicle size	However, neither nitrate transporter activity nor any other compounds transported by known PTR proteins could be detected in either a Xenopus oocyte or yeast system, in our study, suggesting that SP1 may need other component(s) to be able to function as a transporter, or that it transports unknown substrates in the monocotyledonous rice plant
SP1	Os11g0235200	LOC_Os11g12740	panicle	Short panicle1 encodes a putative PTR family transporter and determines rice panicle size	Here, we report on a novel rice mutant, short panicle1 (sp1), which is defective in rice panicle elongation, and thus leads to the short-panicle phenotype
SP1	Os11g0235200	LOC_Os11g12740	panicle	Short panicle1 encodes a putative PTR family transporter and determines rice panicle size	The SP1 gene is highly expressed in the phloem of the branches of young panicles, which is consistent with the predicted function of SP1 and the sp1 phenotype
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	panicle	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	Our findings support a model in which SP3 regulates panicle architecture by modulating cytokinin homeostasis
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	cytokinin	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	SP3 both up- and down-regulates expression of genes involved in cytokinin biosynthesis and catabolism, respectively
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	cytokinin	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	Consequently, cytokinin concentrations are decreased in young sp3 panicles, thereby leading to small panicles having fewer branches and spikelets
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	cytokinin	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	Our findings support a model in which SP3 regulates panicle architecture by modulating cytokinin homeostasis
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	meristem	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	SP3 acts as a negative regulator of inflorescence meristem abortion by upregulating APO2/RFL
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	inflorescence	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	SP3 acts as a negative regulator of inflorescence meristem abortion by upregulating APO2/RFL
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	architecture	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	Our findings support a model in which SP3 regulates panicle architecture by modulating cytokinin homeostasis
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	homeostasis	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	Our findings support a model in which SP3 regulates panicle architecture by modulating cytokinin homeostasis
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	panicle architecture	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	Our findings support a model in which SP3 regulates panicle architecture by modulating cytokinin homeostasis
SP3|OsDOF15	Os03g0764900	LOC_Os03g55610	transcriptional activator	Short Panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	SP3 encodes a DNA binding with one finger (Dof) transcriptional activator
SPDT	Os06g0143700	LOC_Os06g05160	xylem	Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	SPDT is expressed in the xylem region of both enlarged- and diffuse-vascular bundles of the nodes, and encodes a plasma-membrane-localized transporter for phosphorus
SPDT	Os06g0143700	LOC_Os06g05160	vascular bundle	Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	SPDT is expressed in the xylem region of both enlarged- and diffuse-vascular bundles of the nodes, and encodes a plasma-membrane-localized transporter for phosphorus
SPDT	Os06g0143700	LOC_Os06g05160	transporter	Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	SPDT is expressed in the xylem region of both enlarged- and diffuse-vascular bundles of the nodes, and encodes a plasma-membrane-localized transporter for phosphorus
SPDT	Os06g0143700	LOC_Os06g05160	phosphorus	Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	SPDT is expressed in the xylem region of both enlarged- and diffuse-vascular bundles of the nodes, and encodes a plasma-membrane-localized transporter for phosphorus
SPDT	Os06g0143700	LOC_Os06g05160	phosphorus	Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	These results indicate that SPDT functions in the rice node as a switch to allocate phosphorus preferentially to the grains
SPDT	Os06g0143700	LOC_Os06g05160	node	Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	These results indicate that SPDT functions in the rice node as a switch to allocate phosphorus preferentially to the grains
sped1-D	Os06g0597500	LOC_Os06g39650	pedicels	Regulation of inflorescence branch development in rice through a novel pathway involving the pentatricopeptide repeat protein sped1-D	These results suggest that sped1-D may prompt the shortening of pedicels and secondary branches by blocking the action of GID1L2, RFL, and Wox3.
SPH	Os04g0447100	LOC_Os04g37430	lemma	Identification of a novel SPLIT-HULL (SPH) gene associated with hull splitting in rice (Oryza sativa L.).	The split-hull phenotype caused by reduced lemma width and low lignin content is under control of SPH encoding a type-2 13-lipoxygenase and contributes to high dehulling efficiency
SPH	Os04g0447100	LOC_Os04g37430	lemma	Identification of a novel SPLIT-HULL (SPH) gene associated with hull splitting in rice (Oryza sativa L.).	Morphological and chemical analysis revealed that reduction in the width of the lemma and lignin content of the hull in the sph mutant might be the cause of hull splitting
SPH	Os04g0447100	LOC_Os04g37430	lignin	Identification of a novel SPLIT-HULL (SPH) gene associated with hull splitting in rice (Oryza sativa L.).	The split-hull phenotype caused by reduced lemma width and low lignin content is under control of SPH encoding a type-2 13-lipoxygenase and contributes to high dehulling efficiency
SPH	Os04g0447100	LOC_Os04g37430	lignin	Identification of a novel SPLIT-HULL (SPH) gene associated with hull splitting in rice (Oryza sativa L.).	Morphological and chemical analysis revealed that reduction in the width of the lemma and lignin content of the hull in the sph mutant might be the cause of hull splitting
SPIN1	Os03g0815700	LOC_Os03g60110	disease	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPIN1	Os03g0815700	LOC_Os03g60110	heading date	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Spin1 overexpression causes late flowering independently of daylength; expression analyses of flowering marker genes in these lines suggested that SPIN1 represses flowering by downregulating the flowering promoter gene Heading date3a (Hd3a) via Hd1-dependent mechanisms in short days and by targeting Hd1-independent factors in long days
SPIN1	Os03g0815700	LOC_Os03g60110	flowering time	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice
SPIN1	Os03g0815700	LOC_Os03g60110	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPIN1	Os03g0815700	LOC_Os03g60110	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	Overexpression of Spin1 causes late flowering in transgenic rice under short-day (SD) and long-day (LD) conditions
SPIN1	Os03g0815700	LOC_Os03g60110	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	In this study, we characterized the function of the RNA-binding and SPIN1-interacting 1 (RBS1) protein in flowering time regulation
SPIN1	Os03g0815700	LOC_Os03g60110	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	These results suggest that RBS1 is a new negative regulator of flowering time that itself is positively regulated by SPIN1 but negatively regulated by SPL11 in rice
SPIN1	Os03g0815700	LOC_Os03g60110	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice
SPIN1	Os03g0815700	LOC_Os03g60110	cell death	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPIN1	Os03g0815700	LOC_Os03g60110	flowering time	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPIN1	Os03g0815700	LOC_Os03g60110	flowering time	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	In this study, we characterized the function of the RNA-binding and SPIN1-interacting 1 (RBS1) protein in flowering time regulation
SPIN1	Os03g0815700	LOC_Os03g60110	flowering time	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	These results suggest that RBS1 is a new negative regulator of flowering time that itself is positively regulated by SPIN1 but negatively regulated by SPL11 in rice
SPIN1	Os03g0815700	LOC_Os03g60110	flowering time	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice
SPIN1	Os03g0815700	LOC_Os03g60110	disease resistance	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPIN1	Os03g0815700	LOC_Os03g60110	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	We demonstrate here that SPL11 also regulates flowering via interaction with SPIN1 (for SPL11-interacting protein1), a Signal Transduction and Activation of RNA family member
SPIN1	Os03g0815700	LOC_Os03g60110	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Spin1 overexpression causes late flowering independently of daylength; expression analyses of flowering marker genes in these lines suggested that SPIN1 represses flowering by downregulating the flowering promoter gene Heading date3a (Hd3a) via Hd1-dependent mechanisms in short days and by targeting Hd1-independent factors in long days
SPIN1	Os03g0815700	LOC_Os03g60110	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Moreover, we show that coincidence of high accumulation of Spin1 mRNA with the light in the morning and early evening is needed to repress flowering
SPIN1	Os03g0815700	LOC_Os03g60110	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Our data are consistent with a model in which SPIN1 acts as a negative regulator of flowering that itself is negatively regulated by SPL11, possibly via ubiquitination
SPIN1	Os03g0815700	LOC_Os03g60110	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice
SPIN6	Os07g0658300	LOC_Os07g46450	blast	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	Both RNAi silencing in transgenic rice and knockout of Spin6 in a T-DNA insertion mutant lead to PCD and increased resistance to the rice blast pathogen Magnaporthe oryzae and the bacterial blight pathogen Xanthomonas oryzae pv
SPIN6	Os07g0658300	LOC_Os07g46450	magnaporthe oryzae	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	Both RNAi silencing in transgenic rice and knockout of Spin6 in a T-DNA insertion mutant lead to PCD and increased resistance to the rice blast pathogen Magnaporthe oryzae and the bacterial blight pathogen Xanthomonas oryzae pv
SPIN6	Os07g0658300	LOC_Os07g46450	blight	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	Both RNAi silencing in transgenic rice and knockout of Spin6 in a T-DNA insertion mutant lead to PCD and increased resistance to the rice blast pathogen Magnaporthe oryzae and the bacterial blight pathogen Xanthomonas oryzae pv
SPIN6	Os07g0658300	LOC_Os07g46450	cell death	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.
SPIN6	Os07g0658300	LOC_Os07g46450	PCD	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	Both RNAi silencing in transgenic rice and knockout of Spin6 in a T-DNA insertion mutant lead to PCD and increased resistance to the rice blast pathogen Magnaporthe oryzae and the bacterial blight pathogen Xanthomonas oryzae pv
SPIN6	Os07g0658300	LOC_Os07g46450	bacterial blight	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	Both RNAi silencing in transgenic rice and knockout of Spin6 in a T-DNA insertion mutant lead to PCD and increased resistance to the rice blast pathogen Magnaporthe oryzae and the bacterial blight pathogen Xanthomonas oryzae pv
SPIN6	Os07g0658300	LOC_Os07g46450	resistance	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	Both RNAi silencing in transgenic rice and knockout of Spin6 in a T-DNA insertion mutant lead to PCD and increased resistance to the rice blast pathogen Magnaporthe oryzae and the bacterial blight pathogen Xanthomonas oryzae pv
SPIN6	Os07g0658300	LOC_Os07g46450	innate immunity	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.
SPIN6	Os07g0658300	LOC_Os07g46450	immunity	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.
SPIN6	Os07g0658300	LOC_Os07g46450	immunity	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	Together, our results demonstrate that the RhoGAP SPIN6 acts as a linkage between a U-box E3 ligase-mediated ubiquitination pathway and a small GTPase-associated defensome system for plant immunity
SPIN6	Os07g0658300	LOC_Os07g46450	reactive oxygen species	The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	The levels of reactive oxygen species and defense-related gene expression are significantly elevated in both the Spin6 RNAi and mutant plants
SPK	Os10g0539600	LOC_Os10g39420	starch	Rice SPK, a Calmodulin-Like Domain Protein Kinase, Is Required for Storage Product Accumulation during Seed Development: Phosphorylation of Sucrose Synthase Is a Possible Factor	Antisense SPK transformants lacked the ability to accumulate storage products such as starch, but produced watery seed with a large amount of Suc instead, as the result of an inhibition of Suc degradation
SPK	Os10g0539600	LOC_Os10g39420	seed development	Rice SPK, a Calmodulin-Like Domain Protein Kinase, Is Required for Storage Product Accumulation during Seed Development: Phosphorylation of Sucrose Synthase Is a Possible Factor	Rice SPK, a Calmodulin-Like Domain Protein Kinase, Is Required for Storage Product Accumulation during Seed Development: Phosphorylation of Sucrose Synthase Is a Possible Factor
SPK	Os10g0539600	LOC_Os10g39420	seed	Rice SPK, a Calmodulin-Like Domain Protein Kinase, Is Required for Storage Product Accumulation during Seed Development: Phosphorylation of Sucrose Synthase Is a Possible Factor	Rice SPK, a calcium-dependent protein kinase, is expressed uniquely in the endosperm of immature seed, and its involvement in the biosynthetic pathways of storage products was suggested
SPK	Os10g0539600	LOC_Os10g39420	seed	Rice SPK, a Calmodulin-Like Domain Protein Kinase, Is Required for Storage Product Accumulation during Seed Development: Phosphorylation of Sucrose Synthase Is a Possible Factor	Antisense SPK transformants lacked the ability to accumulate storage products such as starch, but produced watery seed with a large amount of Suc instead, as the result of an inhibition of Suc degradation
SPK	Os10g0539600	LOC_Os10g39420	seed	Rice SPK, a Calmodulin-Like Domain Protein Kinase, Is Required for Storage Product Accumulation during Seed Development: Phosphorylation of Sucrose Synthase Is a Possible Factor	Rice SPK, a Calmodulin-Like Domain Protein Kinase, Is Required for Storage Product Accumulation during Seed Development: Phosphorylation of Sucrose Synthase Is a Possible Factor
SPK	Os10g0539600	LOC_Os10g39420	endosperm	Rice SPK, a Calmodulin-Like Domain Protein Kinase, Is Required for Storage Product Accumulation during Seed Development: Phosphorylation of Sucrose Synthase Is a Possible Factor	Rice SPK, a calcium-dependent protein kinase, is expressed uniquely in the endosperm of immature seed, and its involvement in the biosynthetic pathways of storage products was suggested
SPK	Os10g0539600	LOC_Os10g39420	seed	RNA maturation of the rice SPK gene may involve trans-splicing	A gene encoding a calcium-dependent seed-specific protein kinase (SPK) is abundantly expressed in developing rice seeds (Kawasaki, T et al
SPL11	Os12g0570000	LOC_Os12g38210	blast	Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity	Expression analysis indicated that Spl11 is induced in both incompatible and compatible rice-blast interactions
SPL11	Os12g0570000	LOC_Os12g38210	disease	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	The rice (Oryza sativa) E3 ligase SPOTTED LEAF11 (SPL11) negatively regulates programmed cell death and disease resistance
SPL11	Os12g0570000	LOC_Os12g38210	disease resistance	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPL11	Os12g0570000	LOC_Os12g38210	flowering time	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPL11	Os12g0570000	LOC_Os12g38210	flowering time	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	These results suggest that RBS1 is a new negative regulator of flowering time that itself is positively regulated by SPIN1 but negatively regulated by SPL11 in rice
SPL11	Os12g0570000	LOC_Os12g38210	disease resistance	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	The rice (Oryza sativa) E3 ligase SPOTTED LEAF11 (SPL11) negatively regulates programmed cell death and disease resistance
SPL11	Os12g0570000	LOC_Os12g38210	flowering time	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice
SPL11	Os12g0570000	LOC_Os12g38210	defense	Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity	In vitro ubiquitination assay indicated that the SPL11 protein possesses E3 ubiquitin ligase activity that is dependent on an intact U-box domain, suggesting a role of the ubiquitination system in the control of plant cell death and defense
SPL11	Os12g0570000	LOC_Os12g38210	blast	Regulatory mechanisms of ROI generation are affected by rice spl mutations	We found that spl2, spl7 and spl11 mutant cells accumulated increased amounts of H(2)O(2) in response to rice blast fungal elicitor
SPL11	Os12g0570000	LOC_Os12g38210	leaf	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	The rice (Oryza sativa) E3 ligase SPOTTED LEAF11 (SPL11) negatively regulates programmed cell death and disease resistance
SPL11	Os12g0570000	LOC_Os12g38210	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	We demonstrate here that SPL11 also regulates flowering via interaction with SPIN1 (for SPL11-interacting protein1), a Signal Transduction and Activation of RNA family member
SPL11	Os12g0570000	LOC_Os12g38210	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Spl11 mutants have delayed flowering under long-day conditions
SPL11	Os12g0570000	LOC_Os12g38210	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	Our data are consistent with a model in which SPIN1 acts as a negative regulator of flowering that itself is negatively regulated by SPL11, possibly via ubiquitination
SPL11	Os12g0570000	LOC_Os12g38210	flower	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice
SPL11	Os12g0570000	LOC_Os12g38210	leaf	Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity	The rice (Oryza sativa) spotted leaf11 (spl11) mutant was identified from an ethyl methanesulfonate-mutagenized indica cultivar IR68 population and was previously shown to display a spontaneous cell death phenotype and enhanced resistance to rice fungal and bacterial pathogens
SPL11	Os12g0570000	LOC_Os12g38210	cell death	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice	The rice (Oryza sativa) E3 ligase SPOTTED LEAF11 (SPL11) negatively regulates programmed cell death and disease resistance
SPL11	Os12g0570000	LOC_Os12g38210	cell death	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPL11	Os12g0570000	LOC_Os12g38210	disease	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPL11	Os12g0570000	LOC_Os12g38210	cell death	Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity	The rice (Oryza sativa) spotted leaf11 (spl11) mutant was identified from an ethyl methanesulfonate-mutagenized indica cultivar IR68 population and was previously shown to display a spontaneous cell death phenotype and enhanced resistance to rice fungal and bacterial pathogens
SPL11	Os12g0570000	LOC_Os12g38210	cell death	Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity	In vitro ubiquitination assay indicated that the SPL11 protein possesses E3 ubiquitin ligase activity that is dependent on an intact U-box domain, suggesting a role of the ubiquitination system in the control of plant cell death and defense
SPL11	Os12g0570000	LOC_Os12g38210	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	The rice U-box/ARM E3 ubiquitin ligase SPL11 negatively regulates programmed cell death (PCD) and disease resistance, and controls flowering time through interacting with the novel RNA/DNA binding KH domain protein SPIN1
SPL11	Os12g0570000	LOC_Os12g38210	flower	RBS1, an RNA Binding Protein, Interacts with SPIN1 and Is Involved in Flowering Time Control in Rice	These results suggest that RBS1 is a new negative regulator of flowering time that itself is positively regulated by SPIN1 but negatively regulated by SPL11 in rice
SPL28	Os01g0703600	LOC_Os01g50770	blight	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	The spl28 mutant also exhibited significantly enhanced resistance to rice blast and bacterial blight
SPL28	Os01g0703600	LOC_Os01g50770	bacterial blight	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	The spl28 mutant also exhibited significantly enhanced resistance to rice blast and bacterial blight
SPL28	Os01g0703600	LOC_Os01g50770	blast	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	The spl28 mutant also exhibited significantly enhanced resistance to rice blast and bacterial blight
SPL28	Os01g0703600	LOC_Os01g50770	senescence	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	SPL28 appears to be involved in the regulation of vesicular trafficking, and SPL28 dysfunction causes the formation of hypersensitive response (HR)-like lesions, leading to the initiation of leaf senescence
SPL28	Os01g0703600	LOC_Os01g50770	senescence	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)
SPL28	Os01g0703600	LOC_Os01g50770	flower	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	However, after flowering, spl28 mutants exhibited a significant decrease in chlorophyll content, soluble protein content, and photosystem II efficiency, and high concentrations of reactive oxygen species (ROS), phytoalexin, callose, and autofluorescent phenolic compounds that localized in or around the lesions
SPL28	Os01g0703600	LOC_Os01g50770	defense response	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	To expand our understanding of cell death in plant defense responses, we isolated a novel rice (Oryza sativa) spotted leaf mutant (spl28) that displays a lesion mimic phenotype in the absence of pathogen attack through treatment of Hwacheongbyeo (an elite Korean japonica cultivar) with N-methyl-N-nitrosourea (MNU)
SPL28	Os01g0703600	LOC_Os01g50770	cell death	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	To expand our understanding of cell death in plant defense responses, we isolated a novel rice (Oryza sativa) spotted leaf mutant (spl28) that displays a lesion mimic phenotype in the absence of pathogen attack through treatment of Hwacheongbyeo (an elite Korean japonica cultivar) with N-methyl-N-nitrosourea (MNU)
SPL28	Os01g0703600	LOC_Os01g50770	defense	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	To expand our understanding of cell death in plant defense responses, we isolated a novel rice (Oryza sativa) spotted leaf mutant (spl28) that displays a lesion mimic phenotype in the absence of pathogen attack through treatment of Hwacheongbyeo (an elite Korean japonica cultivar) with N-methyl-N-nitrosourea (MNU)
SPL28	Os01g0703600	LOC_Os01g50770	leaf	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	To expand our understanding of cell death in plant defense responses, we isolated a novel rice (Oryza sativa) spotted leaf mutant (spl28) that displays a lesion mimic phenotype in the absence of pathogen attack through treatment of Hwacheongbyeo (an elite Korean japonica cultivar) with N-methyl-N-nitrosourea (MNU)
SPL28	Os01g0703600	LOC_Os01g50770	leaf	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	SPL28 appears to be involved in the regulation of vesicular trafficking, and SPL28 dysfunction causes the formation of hypersensitive response (HR)-like lesions, leading to the initiation of leaf senescence
SPL28	Os01g0703600	LOC_Os01g50770	leaf	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa)
SPL30|OsACL-A2	Os12g0566300	LOC_Os12g37870	cell death	OsACL-A2 negatively regulates cell death and disease resistance in rice.	OsACL-A2 negatively regulates cell death and disease resistance in rice.
SPL30|OsACL-A2	Os12g0566300	LOC_Os12g37870	disease resistance	OsACL-A2 negatively regulates cell death and disease resistance in rice.	OsACL-A2 negatively regulates cell death and disease resistance in rice.
SPL30|OsACL-A2	Os12g0566300	LOC_Os12g37870	disease	OsACL-A2 negatively regulates cell death and disease resistance in rice.	OsACL-A2 negatively regulates cell death and disease resistance in rice.
SPL30|OsACL-A2	Os12g0566300	LOC_Os12g37870	immunity	OsACL-A2 negatively regulates cell death and disease resistance in rice.	Transcriptome analysis identified a number of up-regulated genes associated with pathogen defence responses in recessive mutants of OsACL-A2, implying its role in innate immunity.
SPL35	Os03g0205000	LOC_Os03g10750	resistance	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	spl35 exhibited decreased chlorophyll content, higher accumulation of H2 O2 , up-regulated expression of defence-related marker genes, and enhanced resistance to both fungal and bacterial pathogens of rice
SPL35	Os03g0205000	LOC_Os03g10750	development	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
SPL35	Os03g0205000	LOC_Os03g10750	cell death	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	Our findings provide insight into a role of SPL35 in regulating cell death and defence response in plants
SPL35	Os03g0205000	LOC_Os03g10750	Ubiquitin	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	The SPL35 gene encodes a novel CUE (coupling of ubiquitin conjugation to ER degradation) domain-containing protein that is predominantly localized in cytosol, ER and unknown punctate compartment(s)
SPL35	Os03g0205000	LOC_Os03g10750	lesion	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 is constitutively expressed in all organs, and both overexpression and knockdown of SPL35 cause the lesion mimic phenotype
SPL35	Os03g0205000	LOC_Os03g10750	lesion mimic	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 is constitutively expressed in all organs, and both overexpression and knockdown of SPL35 cause the lesion mimic phenotype
SPL35	Os03g0205000	LOC_Os03g10750	vesicular	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
SPL35	Os03g0205000	LOC_Os03g10750	vesicular trafficking	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
SPL35	Os03g0205000	LOC_Os03g10750	defence	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
SPL35	Os03g0205000	LOC_Os03g10750	defence	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	Our findings provide insight into a role of SPL35 in regulating cell death and defence response in plants
SPL35	Os03g0205000	LOC_Os03g10750	defence response	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	SPL35 directly interacts with the E2 protein OsUBC5a and the coatomer subunit delta proteins Delta-COP1 and Delta-COP2 through the CUE domain, and down-regulation of these interacting proteins also cause development of HR-like lesions resembling those in spl35 and activation of defence responses, indicating that SPL35 may be involved in the ubiquitination and vesicular trafficking pathways
SPL35	Os03g0205000	LOC_Os03g10750	defence response	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	Our findings provide insight into a role of SPL35 in regulating cell death and defence response in plants
SPL36	Os12g0182300	LOC_Os12g08180	growth	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	Physiological and biochemical experiments indicated that more cell death occurred in spl36 than the wild type and that plant growth and development were affected in this mutant
SPL36	Os12g0182300	LOC_Os12g08180	resistance	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	spl36 displayed spontaneous cell death and enhanced resistance to rice bacterial pathogens
SPL36	Os12g0182300	LOC_Os12g08180	resistance	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	These findings suggest that SPL36 regulates the disease resistance response in rice by affecting the expression of defense- and stress-related genes
SPL36	Os12g0182300	LOC_Os12g08180	development	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	Physiological and biochemical experiments indicated that more cell death occurred in spl36 than the wild type and that plant growth and development were affected in this mutant
SPL36	Os12g0182300	LOC_Os12g08180	disease	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	Gene expression analysis suggested that spl36 functions in the disease response by upregulating the expression of defense-related genes
SPL36	Os12g0182300	LOC_Os12g08180	disease	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	These findings suggest that SPL36 regulates the disease resistance response in rice by affecting the expression of defense- and stress-related genes
SPL36	Os12g0182300	LOC_Os12g08180	disease resistance	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	These findings suggest that SPL36 regulates the disease resistance response in rice by affecting the expression of defense- and stress-related genes
SPL36	Os12g0182300	LOC_Os12g08180	defense	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice
SPL36	Os12g0182300	LOC_Os12g08180	map-based cloning	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	We isolated SPL36 by map-based cloning
SPL36	Os12g0182300	LOC_Os12g08180	salt	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	spl36 was more sensitive to salt stress than the wild type, suggesting that SPL36 also negatively regulates the salt-stress response
SPL36	Os12g0182300	LOC_Os12g08180	defense response	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice
SPL36	Os12g0182300	LOC_Os12g08180	salt stress	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	spl36 was more sensitive to salt stress than the wild type, suggesting that SPL36 also negatively regulates the salt-stress response
SPL36	Os12g0182300	LOC_Os12g08180	stress	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 is predicted to encode a receptor-like protein kinase containing leucine-rich domains that may be involved in stress responses in rice
SPL36	Os12g0182300	LOC_Os12g08180	stress	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	spl36 was more sensitive to salt stress than the wild type, suggesting that SPL36 also negatively regulates the salt-stress response
SPL36	Os12g0182300	LOC_Os12g08180	cell death	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice
SPL36	Os12g0182300	LOC_Os12g08180	cell death	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	spl36 displayed spontaneous cell death and enhanced resistance to rice bacterial pathogens
SPL36	Os12g0182300	LOC_Os12g08180	cell death	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	Physiological and biochemical experiments indicated that more cell death occurred in spl36 than the wild type and that plant growth and development were affected in this mutant
SPL36	Os12g0182300	LOC_Os12g08180	plant growth	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	Physiological and biochemical experiments indicated that more cell death occurred in spl36 than the wild type and that plant growth and development were affected in this mutant
SPL36	Os12g0182300	LOC_Os12g08180	Kinase	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice
SPL36	Os12g0182300	LOC_Os12g08180	Kinase	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 is predicted to encode a receptor-like protein kinase containing leucine-rich domains that may be involved in stress responses in rice
SPL36	Os12g0182300	LOC_Os12g08180	protein kinase	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice
SPL36	Os12g0182300	LOC_Os12g08180	protein kinase	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 is predicted to encode a receptor-like protein kinase containing leucine-rich domains that may be involved in stress responses in rice
SPL36	Os12g0182300	LOC_Os12g08180	kinase	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice
SPL36	Os12g0182300	LOC_Os12g08180	kinase	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 is predicted to encode a receptor-like protein kinase containing leucine-rich domains that may be involved in stress responses in rice
SPL36	Os12g0182300	LOC_Os12g08180	stress response	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 is predicted to encode a receptor-like protein kinase containing leucine-rich domains that may be involved in stress responses in rice
SPL36	Os12g0182300	LOC_Os12g08180	stress response	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	spl36 was more sensitive to salt stress than the wild type, suggesting that SPL36 also negatively regulates the salt-stress response
SPL36	Os12g0182300	LOC_Os12g08180	programmed cell death	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice
SPL40	Os05g0312000	LOC_Os05g24684	resistance	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
SPL40	Os05g0312000	LOC_Os05g24684	resistance	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	Here, we reported a novel spotted-leaf mutant, spl40 that showed enhanced disease resistance response
SPL40	Os05g0312000	LOC_Os05g24684	resistance	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	spl40 exhibited enhanced resistance to 14 out of 16 races of bacterial blight pathogen of rice, caused by Xanthomonas oryzae pv
SPL40	Os05g0312000	LOC_Os05g24684	resistance	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	CONCLUSION: The results obtained here clearly show that genes related to defense and PCD were upregulated in accordance with enhanced disease resistance and occurrence of PCD, whereas the photosynthetic capacity and overall ROS homeostasis was compromised in spl40
SPL40	Os05g0312000	LOC_Os05g24684	disease	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	Here, we reported a novel spotted-leaf mutant, spl40 that showed enhanced disease resistance response
SPL40	Os05g0312000	LOC_Os05g24684	disease	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	CONCLUSION: The results obtained here clearly show that genes related to defense and PCD were upregulated in accordance with enhanced disease resistance and occurrence of PCD, whereas the photosynthetic capacity and overall ROS homeostasis was compromised in spl40
SPL40	Os05g0312000	LOC_Os05g24684	disease resistance	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	Here, we reported a novel spotted-leaf mutant, spl40 that showed enhanced disease resistance response
SPL40	Os05g0312000	LOC_Os05g24684	disease resistance	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	CONCLUSION: The results obtained here clearly show that genes related to defense and PCD were upregulated in accordance with enhanced disease resistance and occurrence of PCD, whereas the photosynthetic capacity and overall ROS homeostasis was compromised in spl40
SPL40	Os05g0312000	LOC_Os05g24684	blight	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
SPL40	Os05g0312000	LOC_Os05g24684	blight	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	spl40 exhibited enhanced resistance to 14 out of 16 races of bacterial blight pathogen of rice, caused by Xanthomonas oryzae pv
SPL40	Os05g0312000	LOC_Os05g24684	bacterial blight	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
SPL40	Os05g0312000	LOC_Os05g24684	bacterial blight	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	spl40 exhibited enhanced resistance to 14 out of 16 races of bacterial blight pathogen of rice, caused by Xanthomonas oryzae pv
SPL40	Os05g0312000	LOC_Os05g24684	defense	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	CONCLUSION: The results obtained here clearly show that genes related to defense and PCD were upregulated in accordance with enhanced disease resistance and occurrence of PCD, whereas the photosynthetic capacity and overall ROS homeostasis was compromised in spl40
SPL40	Os05g0312000	LOC_Os05g24684	cell death	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	spl40 showed obvious cell death at and around the lesion, and burst of reactive oxygen species (ROS) was accompanied by disturbed ROS scavenging system
SPL40	Os05g0312000	LOC_Os05g24684	pathogen	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	spl40 exhibited enhanced resistance to 14 out of 16 races of bacterial blight pathogen of rice, caused by Xanthomonas oryzae pv
SPL40	Os05g0312000	LOC_Os05g24684	homeostasis	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	CONCLUSION: The results obtained here clearly show that genes related to defense and PCD were upregulated in accordance with enhanced disease resistance and occurrence of PCD, whereas the photosynthetic capacity and overall ROS homeostasis was compromised in spl40
SPL40	Os05g0312000	LOC_Os05g24684	reactive oxygen species	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	spl40 showed obvious cell death at and around the lesion, and burst of reactive oxygen species (ROS) was accompanied by disturbed ROS scavenging system
SPL40	Os05g0312000	LOC_Os05g24684	PCD	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	CONCLUSION: The results obtained here clearly show that genes related to defense and PCD were upregulated in accordance with enhanced disease resistance and occurrence of PCD, whereas the photosynthetic capacity and overall ROS homeostasis was compromised in spl40
SPL40	Os05g0312000	LOC_Os05g24684	lesion	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	Interestingly, the complementation plants did not display lesions before heading but showed lesions at the heading stage and the transgenic T(1) progenies could be classified into 3 categories based on their lesion intensity, indicating the complex genetic nature of the spl40 mutation
SPL42	Os02g0168800	LOC_Os02g07230	leaf	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the spl42 mutant
SPL42	Os02g0168800	LOC_Os02g07230	leaf senescence	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the spl42 mutant
SPL42	Os02g0168800	LOC_Os02g07230	chloroplast	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the spl42 mutant
SPL42	Os02g0168800	LOC_Os02g07230	chloroplast	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 SPL42 targets to the chloroplast and interacts with the multiple organelle RNA editing factors (MORFs) OsMORF8-1 and OsMORF8-2 to affect RNA editing
SPL42	Os02g0168800	LOC_Os02g07230	development	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the spl42 mutant
SPL42	Os02g0168800	LOC_Os02g07230	defense response	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the spl42 mutant
SPL42	Os02g0168800	LOC_Os02g07230	defense	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the spl42 mutant
SPL42	Os02g0168800	LOC_Os02g07230	map-based cloning	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 Map-based cloning revealed that SPL42 encodes a PBGD
SPL42	Os02g0168800	LOC_Os02g07230	chloroplast development	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the spl42 mutant
SPL42	Os02g0168800	LOC_Os02g07230	chlorophyll	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 Consistently, multiple genes related to chloroplast development and chlorophyll biosynthesis were significantly down-regulated, whereas many genes involved in leaf senescence, ROS production, and defense responses were upregulated in the spl42 mutant
SPL42	Os02g0168800	LOC_Os02g07230	chlorophyll	Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.	 The identification and characterization of spl42 helps in elucidating the molecular mechanisms associated with chlorophyll synthesis and RNA editing in rice
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	cell death	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice	) spotted leaf 5 (spl5) indicates that wild-type SPL5 negatively regulates cell death and resistance responses
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	cell death	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice	Bioinformatic analysis showed that SPL5 gene encodes a putative splicing factor 3b subunit 3 (SF3b3) and might be involved in splicing reactions of pre-mature RNAs participating in the regulation of cell death and resistance responses
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	cell death	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice	The data presented here clearly indicate that the SPL5 negatively regulates cell death and resistance responses via modulating RNA splicing in plants
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	cell death	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	leaf	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice	) spotted leaf 5 (spl5) indicates that wild-type SPL5 negatively regulates cell death and resistance responses
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	defense	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	leaf	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Rice mutant, spl5 (spotted leaf 5), has spontaneous hypersensitive-like lesions on its leaves and shows enhanced resistance to pathogens, indicating that SPL5 plays a role in programmed cell death (PCD) and disease resistance
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	resistance	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Rice mutant, spl5 (spotted leaf 5), has spontaneous hypersensitive-like lesions on its leaves and shows enhanced resistance to pathogens, indicating that SPL5 plays a role in programmed cell death (PCD) and disease resistance
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	resistance	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Since the serotonin plays a critical role in inducing disease-resistance, the increased serotonin level may contribute, at least partly, to the disease resistance in spl5
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	defense	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	The SPL5 gene may act as a negative regulatory factor activating the serotonin metabolic pathway, and these results might provide a new insight into the spl5-induced defense response mechanisms in plants
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	transcription factor	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Interestingly, according to our microarray and real-time PCR assays, the expressions of a transcription factor OsWRKY14 and genes responsible for the biosynthesis of serotonin, anthranilate synthase (AS), indole-3-glycerolphosphate synthase (IGPS), tryptophan synthase (TS) and tryptophan decarboxylase (TDC) were significantly up-regulated in the spl5 mutant
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	defense response	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	The SPL5 gene may act as a negative regulatory factor activating the serotonin metabolic pathway, and these results might provide a new insight into the spl5-induced defense response mechanisms in plants
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	disease	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	disease	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Rice mutant, spl5 (spotted leaf 5), has spontaneous hypersensitive-like lesions on its leaves and shows enhanced resistance to pathogens, indicating that SPL5 plays a role in programmed cell death (PCD) and disease resistance
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	disease	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Since the serotonin plays a critical role in inducing disease-resistance, the increased serotonin level may contribute, at least partly, to the disease resistance in spl5
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	disease resistance	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	disease resistance	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Rice mutant, spl5 (spotted leaf 5), has spontaneous hypersensitive-like lesions on its leaves and shows enhanced resistance to pathogens, indicating that SPL5 plays a role in programmed cell death (PCD) and disease resistance
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	disease resistance	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Since the serotonin plays a critical role in inducing disease-resistance, the increased serotonin level may contribute, at least partly, to the disease resistance in spl5
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	cell death	Transcriptome profiling of the spl5 mutant reveals that SPL5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Rice mutant, spl5 (spotted leaf 5), has spontaneous hypersensitive-like lesions on its leaves and shows enhanced resistance to pathogens, indicating that SPL5 plays a role in programmed cell death (PCD) and disease resistance
spl5|SF3b3	Os07g0203700	LOC_Os07g10390	yield	A 1.84-Mb region on rice chromosome 2 carrying SPL4, SPL5 and MLO8 genes is associated with higher yield under phosphorus-deficient acidic soil	A 1.84-Mb region on rice chromosome 2 carrying SPL4, SPL5 and MLO8 genes is associated with higher yield under phosphorus-deficient acidic soil
SPL6	Os03g0833300	LOC_Os03g61760	panicle	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.
SPL6	Os03g0833300	LOC_Os03g61760	stress	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.
SPL6	Os03g0833300	LOC_Os03g61760	stress	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.	Here, we report that SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE 6 (SPL6)-deficient plants displayed hyperactivation of the endoplasmic reticulum (ER) stress sensor IRE1, leading to cell death in rice panicles, indicating that SPL6 is an essential survival factor for the suppression of persistent or intense ER stress conditions
SPL6	Os03g0833300	LOC_Os03g61760	stress	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.	Our findings reveal a novel cell survival machinery in which SPL6 represses the transcriptional activation of the ER stress sensor IRE1 in control of ER stress signalling outputs that hinge on a balance between adaptive and death signals for determining cell fates during ER stress
SPL6	Os03g0833300	LOC_Os03g61760	cell death	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.
SPL6	Os03g0833300	LOC_Os03g61760	cell death	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.	Here, we report that SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE 6 (SPL6)-deficient plants displayed hyperactivation of the endoplasmic reticulum (ER) stress sensor IRE1, leading to cell death in rice panicles, indicating that SPL6 is an essential survival factor for the suppression of persistent or intense ER stress conditions
Spl7	Os05g0530400	LOC_Os05g45410	leaf	A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein	A rice spotted leaf (lesion-mimic) gene, Spl7, was identified by map-based cloning
Spl7	Os05g0530400	LOC_Os05g45410	leaf	A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein	Transgenic analysis verified the function of the candidate gene for Spl7: leaf spot development was suppressed in spl7 mutants with a wild-type Spl7 transgene
Spl7	Os05g0530400	LOC_Os05g45410	leaf	A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein	A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein
Spl7	Os05g0530400	LOC_Os05g45410	transcription factor	A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein	A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein
Spl7	Os05g0530400	LOC_Os05g45410	blast	Regulatory mechanisms of ROI generation are affected by rice spl mutations	We found that spl2, spl7 and spl11 mutant cells accumulated increased amounts of H(2)O(2) in response to rice blast fungal elicitor
SPP	Os06g0625400	LOC_Os06g41990	root	A rice stromal processing peptidase regulates chloroplast and root development	The present results reveal that SPP is essential for chloroplast biogenesis at the early growth stage and for rice root development; this is the first report on the function of SPP in monocot plants
SPP	Os06g0625400	LOC_Os06g41990	chloroplast	A rice stromal processing peptidase regulates chloroplast and root development	Subcellular localization analysis indicates that SPP is targeted to the chloroplast
SPP	Os06g0625400	LOC_Os06g41990	chloroplast	A rice stromal processing peptidase regulates chloroplast and root development	The expression of some genes associated with chloroplast development was decreased in young seedlings of the spp mutant, but not in 14-day-old seedlings
SPP	Os06g0625400	LOC_Os06g41990	chloroplast	A rice stromal processing peptidase regulates chloroplast and root development	The present results reveal that SPP is essential for chloroplast biogenesis at the early growth stage and for rice root development; this is the first report on the function of SPP in monocot plants
SPP	Os06g0625400	LOC_Os06g41990	seedling	A rice stromal processing peptidase regulates chloroplast and root development	The expression of some genes associated with chloroplast development was decreased in young seedlings of the spp mutant, but not in 14-day-old seedlings
SPP	Os06g0625400	LOC_Os06g41990	seedling	A rice stromal processing peptidase regulates chloroplast and root development	Western blot analysis revealed that the Rubisco small subunit is not precisely processed in the spp mutant in 7-day-old seedlings, but the processing activity in the spp mutant is restored in 14-day-old seedlings
SPP	Os06g0625400	LOC_Os06g41990	root development	A rice stromal processing peptidase regulates chloroplast and root development	The present results reveal that SPP is essential for chloroplast biogenesis at the early growth stage and for rice root development; this is the first report on the function of SPP in monocot plants
SPP	Os06g0625400	LOC_Os06g41990	growth	A rice stromal processing peptidase regulates chloroplast and root development	The present results reveal that SPP is essential for chloroplast biogenesis at the early growth stage and for rice root development; this is the first report on the function of SPP in monocot plants
spPLD	Os06g0649900	LOC_Os06g44060	shoot	A secretory phospholipase D hydrolyzes phosphatidylcholine to suppress rice heading time.	 Interestingly, rice Hd3a and RFT1 bind to phosphatidylcholines (PCs) and a further analysis by lipidomic approach using mass spectrometry revealed the altered phospholipids profiles in shoot apical meristem, particularly the PC species, under altered spPLD expressions
spPLD	Os06g0649900	LOC_Os06g44060	shoot apical meristem	A secretory phospholipase D hydrolyzes phosphatidylcholine to suppress rice heading time.	 Interestingly, rice Hd3a and RFT1 bind to phosphatidylcholines (PCs) and a further analysis by lipidomic approach using mass spectrometry revealed the altered phospholipids profiles in shoot apical meristem, particularly the PC species, under altered spPLD expressions
SPR9	Os05g0459900	LOC_Os05g38520	resistance	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).
SPR9	Os05g0459900	LOC_Os05g38520	resistance	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).	 Interestingly, the spr9 mutant was found to improve resistance to RFS without affecting major agronomic traits
SPR9	Os05g0459900	LOC_Os05g38520	resistance	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).	 Taken together, our results revealed that the spr9 allele has good application prospects in rice breeding for disease resistance and panicle improvement
SPR9	Os05g0459900	LOC_Os05g38520	panicle	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).
SPR9	Os05g0459900	LOC_Os05g38520	panicle	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).	 Knockout experiments showed that the SPR9 gene is responsible for the spreading panicle phenotype of the spr9 mutant
SPR9	Os05g0459900	LOC_Os05g38520	panicle	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).	 Taken together, our results revealed that the spr9 allele has good application prospects in rice breeding for disease resistance and panicle improvement
SPR9	Os05g0459900	LOC_Os05g38520	disease	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).	 Taken together, our results revealed that the spr9 allele has good application prospects in rice breeding for disease resistance and panicle improvement
SPR9	Os05g0459900	LOC_Os05g38520	disease resistance	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).	 Taken together, our results revealed that the spr9 allele has good application prospects in rice breeding for disease resistance and panicle improvement
SPR9	Os05g0459900	LOC_Os05g38520	breeding	SPR9 encodes a 60 S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice (Oryza sativa. L).	 Taken together, our results revealed that the spr9 allele has good application prospects in rice breeding for disease resistance and panicle improvement
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	growth	Identification of a new gene controlling plant height in rice using the candidate-gene strategy	In agreement with this hypothesis, transgenic rice plants with a maize SPS gene that had about 3 times the SPS activity of that in Nipponbare (control plants) were significantly taller than Nipponbare from the early growth stage
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	phosphate	Characterization of a rice sucrose-phosphate synthase-encoding gene	A rice genomic clone (sps1) coding for sucrose phosphate synthase (SPS) was isolated and sequenced
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	phosphate	The promoter activities of sucrose phosphate synthase genes in rice, OsSPS1 and OsSPS11, are controlled by light and circadian clock, but not by sucrose	The promoter activities of sucrose phosphate synthase genes in rice, OsSPS1 and OsSPS11, are controlled by light and circadian clock, but not by sucrose
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	height	Identification of a new gene controlling plant height in rice using the candidate-gene strategy	The higher level of SPS transcripts and the activity of SPS in NIL6 compared to control plants, and the fact that the relative SPS activity per SPS protein content was almost the same between NIL6 and Nipponbare suggested that the higher plant height in NIL6 compared to Nipponbare was due to the high SPS activity in NIL6
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	leaf	Tissue-specific and developmental pattern of expression of the rice sps1 gene	During leaf development, the sps1 promoter directs a basipetal pattern of expression that coincides with the distribution of SPS activity during the leaf sink-to-source transition
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	leaf	Tissue-specific and developmental pattern of expression of the rice sps1 gene	It was also found that during the vegetative part of the growth cycle, SPS expression and enzymatic activity are highest in the youngest fully expanded leaf
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	leaf	Characterization of a rice sucrose-phosphate synthase-encoding gene	Analysis of rice sps1 expression showed that mRNA levels change during leaf development
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	pollen	Tissue-specific and developmental pattern of expression of the rice sps1 gene	It was found that the expression of the rice sps1 gene is limited to mesophyll cells in leaves, the scutellum of germinating seedlings, and pollen of immature inflorescences
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	growth	Tissue-specific and developmental pattern of expression of the rice sps1 gene	It was also found that during the vegetative part of the growth cycle, SPS expression and enzymatic activity are highest in the youngest fully expanded leaf
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	seed	Tissue-specific and developmental pattern of expression of the rice sps1 gene	SPS plays a central role in the production of sucrose in photosynthetic cells and in the conversion of starch or fatty acids into sucrose in germinating seeds
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	seed	Tissue-specific and developmental pattern of expression of the rice sps1 gene	It was found that the expression of the rice sps1 gene is limited to mesophyll cells in leaves, the scutellum of germinating seedlings, and pollen of immature inflorescences
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	vegetative	Tissue-specific and developmental pattern of expression of the rice sps1 gene	It was also found that during the vegetative part of the growth cycle, SPS expression and enzymatic activity are highest in the youngest fully expanded leaf
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	phosphate	The promoter activities of sucrose phosphate synthase genes in rice, OsSPS1 and OsSPS11, are controlled by light and circadian clock, but not by sucrose	Our previous study on the expression of the sucrose phosphate synthase gene family in rice (OsSPSs) suggested the involvement of sucrose sensing and/or circadian rhythm in the transcriptional regulation of OsSPS
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	inflorescence	Tissue-specific and developmental pattern of expression of the rice sps1 gene	It was found that the expression of the rice sps1 gene is limited to mesophyll cells in leaves, the scutellum of germinating seedlings, and pollen of immature inflorescences
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	leaf development	Tissue-specific and developmental pattern of expression of the rice sps1 gene	During leaf development, the sps1 promoter directs a basipetal pattern of expression that coincides with the distribution of SPS activity during the leaf sink-to-source transition
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	root	Characterization of a rice sucrose-phosphate synthase-encoding gene	SPS activity and mRNA were undetectable in roots
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	seedling	Tissue-specific and developmental pattern of expression of the rice sps1 gene	It was found that the expression of the rice sps1 gene is limited to mesophyll cells in leaves, the scutellum of germinating seedlings, and pollen of immature inflorescences
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	starch	Tissue-specific and developmental pattern of expression of the rice sps1 gene	SPS plays a central role in the production of sucrose in photosynthetic cells and in the conversion of starch or fatty acids into sucrose in germinating seeds
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	leaf development	Characterization of a rice sucrose-phosphate synthase-encoding gene	Analysis of rice sps1 expression showed that mRNA levels change during leaf development
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	leaf	A reduction of sucrose phosphate synthase (SPS) activity affects sucrose/starch ratio in leaves but does not inhibit normal plant growth in rice.	In a double knockout mutant of OsSPS1 and OsSPS11 (sps1/sps11), an 84% reduction in leaf SPS activity resulted in higher starch accumulation in the leaves than in the wild-type leaves
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	growth	A reduction of sucrose phosphate synthase (SPS) activity affects sucrose/starch ratio in leaves but does not inhibit normal plant growth in rice.	The knockdown and knockout mutants of OsSPS1 showed a 29-46% reduction in SPS activity in the leaves, but the carbohydrate content in the leaves and plant growth were not significantly different from those of wild-type plants
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	starch	A reduction of sucrose phosphate synthase (SPS) activity affects sucrose/starch ratio in leaves but does not inhibit normal plant growth in rice.	In a double knockout mutant of OsSPS1 and OsSPS11 (sps1/sps11), an 84% reduction in leaf SPS activity resulted in higher starch accumulation in the leaves than in the wild-type leaves
sps1|SPS|OsSPS1	Os01g0919400	LOC_Os01g69030	plant growth	A reduction of sucrose phosphate synthase (SPS) activity affects sucrose/starch ratio in leaves but does not inhibit normal plant growth in rice.	The knockdown and knockout mutants of OsSPS1 showed a 29-46% reduction in SPS activity in the leaves, but the carbohydrate content in the leaves and plant growth were not significantly different from those of wild-type plants
SQD2.1	Os07g0100300	LOC_Os07g01030	tolerance	Rice sulfoquinovosyltransferase SQD2.1 mediates flavonoid glycosylation and enhances tolerance to osmotic stress.	Rice sulfoquinovosyltransferase SQD2.1 mediates flavonoid glycosylation and enhances tolerance to osmotic stress.
SQS	Os03g0805100	LOC_Os03g59040	vegetative	RNAi-mediated disruption of squalene synthase improves drought tolerance and yield in rice	It is demonstrated that RNAi-mediated disruption of a rice farnesyltransferase/squalene synthase (SQS) by maize squalene synthase improves drought tolerance at both the vegetative and reproductive stages
SQS	Os03g0805100	LOC_Os03g59040	drought tolerance	RNAi-mediated disruption of squalene synthase improves drought tolerance and yield in rice	It is demonstrated that RNAi-mediated disruption of a rice farnesyltransferase/squalene synthase (SQS) by maize squalene synthase improves drought tolerance at both the vegetative and reproductive stages
SQS	Os03g0805100	LOC_Os03g59040	drought	RNAi-mediated disruption of squalene synthase improves drought tolerance and yield in rice	It is demonstrated that RNAi-mediated disruption of a rice farnesyltransferase/squalene synthase (SQS) by maize squalene synthase improves drought tolerance at both the vegetative and reproductive stages
SQS	Os03g0805100	LOC_Os03g59040	reproductive	RNAi-mediated disruption of squalene synthase improves drought tolerance and yield in rice	It is demonstrated that RNAi-mediated disruption of a rice farnesyltransferase/squalene synthase (SQS) by maize squalene synthase improves drought tolerance at both the vegetative and reproductive stages
SR1	Os11g0572200	LOC_Os11g36400	xylem	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	SR1 mutation affected the whole root-development process, producing shorter radicles, adventitious roots, and lateral roots, abnormal xylem development, causing dwarfing, and decreasing the water potential and moisture content
SR1	Os11g0572200	LOC_Os11g36400	root	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	SR1 was largely expressed in the roots, but only in developing root meristems and tracheary elements
SR1	Os11g0572200	LOC_Os11g36400	root	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	The membrane transport of the sr1 mutants was blocked, affecting cell division in the root apical region and root tracheary element development
SR1	Os11g0572200	LOC_Os11g36400	root	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	The study of SR1 will deepen our understanding of the function of EXO70 genes in rice and guide future studies on the molecular mechanisms involved in plant root development
SR1	Os11g0572200	LOC_Os11g36400	development	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	The membrane transport of the sr1 mutants was blocked, affecting cell division in the root apical region and root tracheary element development
SR1	Os11g0572200	LOC_Os11g36400	development	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	The study of SR1 will deepen our understanding of the function of EXO70 genes in rice and guide future studies on the molecular mechanisms involved in plant root development
SR1	Os11g0572200	LOC_Os11g36400	cell division	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	The membrane transport of the sr1 mutants was blocked, affecting cell division in the root apical region and root tracheary element development
SR1	Os11g0572200	LOC_Os11g36400	root development	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	The study of SR1 will deepen our understanding of the function of EXO70 genes in rice and guide future studies on the molecular mechanisms involved in plant root development
SR1	Os11g0572200	LOC_Os11g36400	meristem	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	The shortness of the sr1 mutant roots was caused by the presence of fewer meristem cells
SR1	Os11g0572200	LOC_Os11g36400	lateral root	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	SR1 mutation affected the whole root-development process, producing shorter radicles, adventitious roots, and lateral roots, abnormal xylem development, causing dwarfing, and decreasing the water potential and moisture content
SR1	Os11g0572200	LOC_Os11g36400	adventitious root	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	SR1 mutation affected the whole root-development process, producing shorter radicles, adventitious roots, and lateral roots, abnormal xylem development, causing dwarfing, and decreasing the water potential and moisture content
SR1	Os11g0572200	LOC_Os11g36400	root meristem	SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots	SR1 was largely expressed in the roots, but only in developing root meristems and tracheary elements
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	leaf	Semi-rolled leaf1 encodes a putative glycosylphosphatidylinositol-anchored protein and modulates rice leaf rolling by regulating the formation of bulliform cells	Here we report the isolation and characterization of SEMI-ROLLED LEAF1 (SRL1), a gene involved in the regulation of leaf rolling
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	leaf	Semi-rolled leaf1 encodes a putative glycosylphosphatidylinositol-anchored protein and modulates rice leaf rolling by regulating the formation of bulliform cells	These results provide the transcript profile of rice leaf cells that will become bulliform cells and demonstrate that SRL1 regulates leaf rolling through inhibiting the formation of bulliform cells by negatively regulating the expression of genes encoding vacuolar H(+)-ATPase subunits and H(+)-pyrophosphatase, which will help to understand the mechanism regulating leaf rolling
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	leaf rolling	Semi-rolled leaf1 encodes a putative glycosylphosphatidylinositol-anchored protein and modulates rice leaf rolling by regulating the formation of bulliform cells	Here we report the isolation and characterization of SEMI-ROLLED LEAF1 (SRL1), a gene involved in the regulation of leaf rolling
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	leaf rolling	Semi-rolled leaf1 encodes a putative glycosylphosphatidylinositol-anchored protein and modulates rice leaf rolling by regulating the formation of bulliform cells	These results provide the transcript profile of rice leaf cells that will become bulliform cells and demonstrate that SRL1 regulates leaf rolling through inhibiting the formation of bulliform cells by negatively regulating the expression of genes encoding vacuolar H(+)-ATPase subunits and H(+)-pyrophosphatase, which will help to understand the mechanism regulating leaf rolling
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	leaf	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	The defects in leaf epidermis decrease the water-retaining capacity and lead to water deficits in cld1 leaves, which contribute to the main cause of leaf rolling
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	map-based cloning	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	Map-based cloning revealed that CLD1 is allelic with SRL1 and loss its function in cld1 through DNA methylation
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	drought	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	Due to the more rapid water loss and lower water content in leaves, cld1 exhibits reduced drought tolerance
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	tolerance	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	Due to the more rapid water loss and lower water content in leaves, cld1 exhibits reduced drought tolerance
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	drought tolerance	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	Due to the more rapid water loss and lower water content in leaves, cld1 exhibits reduced drought tolerance
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	cellulose	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	The cld1 mutant exhibits significant decreases in cellulose and lignin contents in secondary cell walls of leaves, indicating that loss-of-function of CLD1/SRL1 affects cell wall formation
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	cell wall	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	The cld1 mutant exhibits significant decreases in cellulose and lignin contents in secondary cell walls of leaves, indicating that loss-of-function of CLD1/SRL1 affects cell wall formation
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	lignin	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	The cld1 mutant exhibits significant decreases in cellulose and lignin contents in secondary cell walls of leaves, indicating that loss-of-function of CLD1/SRL1 affects cell wall formation
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	water loss	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	Due to the more rapid water loss and lower water content in leaves, cld1 exhibits reduced drought tolerance
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	epidermis	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	The defects in leaf epidermis decrease the water-retaining capacity and lead to water deficits in cld1 leaves, which contribute to the main cause of leaf rolling
SRL1|CLD1	Os07g0102300	LOC_Os07g01240	leaf rolling	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	The defects in leaf epidermis decrease the water-retaining capacity and lead to water deficits in cld1 leaves, which contribute to the main cause of leaf rolling
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	Here, we describe a srl2 (semi-rolled leaf2) rice mutant, which has incurved leaves due to the presence of defective sclerenchymatous cells on the abaxial side of the leaf and displays narrow leaves and reduced plant height
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	SRL2 was mainly expressed in the vascular bundles of leaf blades, leaf sheaths, and roots, especially in their sclerenchymatous cells
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	The transcriptional activities of several leaf development-related YABBY genes were significantly altered in the srl2 mutant
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	Double mutant analysis suggested that SRL2 and SHALLOT-LIKE1 (SLL1)/ROLLED LEAF9 (RL9) function in distinct pathways that regulate abaxial-side leaf development
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	Hence, SRL2 plays an important role in regulating leaf development, particularly during sclerenchymatous cell differentiation
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	vascular bundle	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	SRL2 was mainly expressed in the vascular bundles of leaf blades, leaf sheaths, and roots, especially in their sclerenchymatous cells
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf development	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	The transcriptional activities of several leaf development-related YABBY genes were significantly altered in the srl2 mutant
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf development	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	Double mutant analysis suggested that SRL2 and SHALLOT-LIKE1 (SLL1)/ROLLED LEAF9 (RL9) function in distinct pathways that regulate abaxial-side leaf development
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf development	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	Hence, SRL2 plays an important role in regulating leaf development, particularly during sclerenchymatous cell differentiation
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	development	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	Double mutant analysis suggested that SRL2 and SHALLOT-LIKE1 (SLL1)/ROLLED LEAF9 (RL9) function in distinct pathways that regulate abaxial-side leaf development
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	map-based cloning	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	Map-based cloning revealed that SRL2 encodes a novel plant-specific protein of unknown biochemical function
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	height	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	Here, we describe a srl2 (semi-rolled leaf2) rice mutant, which has incurved leaves due to the presence of defective sclerenchymatous cells on the abaxial side of the leaf and displays narrow leaves and reduced plant height
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	plant height	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	Here, we describe a srl2 (semi-rolled leaf2) rice mutant, which has incurved leaves due to the presence of defective sclerenchymatous cells on the abaxial side of the leaf and displays narrow leaves and reduced plant height
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	development	ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice.	RNA sequencing (RNA-seq) showed that the development process was affected in avb
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	development	ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice.	Our research shows that AVB is involved in the maintenance of the normal cell division pattern in lateral primordia development and that the AVB gene is required for procambium establishment following auxin signaling
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	map-based cloning	ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice.	Map-based cloning and genetic complementation demonstrated that AVB encodes a land plant conserved protein with unknown functions
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	cell division	ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice.	Ploidy analysis and the in situ expression patterns of histone H4 confirmed that cell proliferation was impaired during lateral primordia development, whereas procambium cells showed a greater ability to undergo cell division in avb
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	cell division	ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice.	Our research shows that AVB is involved in the maintenance of the normal cell division pattern in lateral primordia development and that the AVB gene is required for procambium establishment following auxin signaling
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	auxin	ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice.	Our research shows that AVB is involved in the maintenance of the normal cell division pattern in lateral primordia development and that the AVB gene is required for procambium establishment following auxin signaling
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	cell proliferation	ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice.	Ploidy analysis and the in situ expression patterns of histone H4 confirmed that cell proliferation was impaired during lateral primordia development, whereas procambium cells showed a greater ability to undergo cell division in avb
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	cellulose	NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.	The NRL2 protein interacted with Rolling-leaf (RL14), causing the leaves of the nrl2 mutants to have a higher cellulose content and lower lignin content than the WT, which may have been related to sclerenchymatous cell differentiation and tapetum degeneration
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	tapetum	NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.	The mutation of NRL2 caused pleiotropic effects, including a reduction in the number of longitudinal veins, defective abaxial sclerenchymatous cell differentiation, abnormal tapetum degeneration and microspore development, and the formation of more slender seeds compared with the wild type (WT)
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	tapetum	NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.	The NRL2 protein interacted with Rolling-leaf (RL14), causing the leaves of the nrl2 mutants to have a higher cellulose content and lower lignin content than the WT, which may have been related to sclerenchymatous cell differentiation and tapetum degeneration
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	microspore	NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.	The mutation of NRL2 caused pleiotropic effects, including a reduction in the number of longitudinal veins, defective abaxial sclerenchymatous cell differentiation, abnormal tapetum degeneration and microspore development, and the formation of more slender seeds compared with the wild type (WT)
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	lignin	NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.	The NRL2 protein interacted with Rolling-leaf (RL14), causing the leaves of the nrl2 mutants to have a higher cellulose content and lower lignin content than the WT, which may have been related to sclerenchymatous cell differentiation and tapetum degeneration
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf	Rice Morphogenesis and Chlorophyll Accumulation Is Regulated by the Protein Encoded by NRL3 and Its Interaction With NAL9.	In this study, we isolated and identified a narrow and rolled leaf mutant, temporarily named nrl3 with darker green leaves
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf	Rice Morphogenesis and Chlorophyll Accumulation Is Regulated by the Protein Encoded by NRL3 and Its Interaction With NAL9.	Y2H and BIFC assays indicated that NRL3 interacts directly with NAL9/VYL to regulate leaf morphology in rice
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	leaf	Rice Morphogenesis and Chlorophyll Accumulation Is Regulated by the Protein Encoded by NRL3 and Its Interaction With NAL9.	Thus, NRL3 plays an important role in leaf morphogenesis and chlorophyll accumulation, and can be used as a new gene resource for constructing improved rice
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	vascular bundle	Rice Morphogenesis and Chlorophyll Accumulation Is Regulated by the Protein Encoded by NRL3 and Its Interaction With NAL9.	Histological analysis showed that nrl3 has a reduced number of vascular bundles and undergoes abnormal abaxial sclerenchymatous cell differentiation
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	cell death	Rice Morphogenesis and Chlorophyll Accumulation Is Regulated by the Protein Encoded by NRL3 and Its Interaction With NAL9.	Expression analysis of nrl3 showed that genes involved in chlorophyll synthesis were significantly up-regulated while those involved in chlorophyll degradation and programmed cell death (PCD) were significantly down-regulated
SRL2|AVB|NRL2|NRL3	Os03g0308200	LOC_Os03g19520	nucleus	Rice Morphogenesis and Chlorophyll Accumulation Is Regulated by the Protein Encoded by NRL3 and Its Interaction With NAL9.	NRL3 is localized in cytoplasm, membrane and nucleus
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	grain	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	Transcription of two known grain-length-related genes, GS3 and SRS3, was largely unaffected in the PGL1-overexpressing and APG-silenced plants
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	seed	A novel kinesin 13 protein regulating rice seed length	The causal gene of a novel small and round seed mutant phenotype (srs3) in rice was identified by map-based cloning and named the SRS3 gene
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	seed	A novel kinesin 13 protein regulating rice seed length	Using scanning electron microscopy, we determined that the cell length of seeds in the longitudinal direction in srs3 is shorter than that in the wild type
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	seed	A novel kinesin 13 protein regulating rice seed length	The number of cells of seeds in the longitudinal direction in srs3 was not very different from that in the wild type
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	seed	A novel kinesin 13 protein regulating rice seed length	The result suggests that the small and round seed phenotype of srs3 is due to a reduction in cell length of seeds in the longitudinal direction
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	cellulose	OsKinesin-13A Is an Active Microtubule Depolymerase Involved in Glume Length Regulation via Affecting Cell Elongation.	Thus, our results suggest that OsKinesin-13A utilizes its microtubule depolymerization activity to promote microtubule turnover, which may not only influence transverse orientation of cortical microtubules but also facilitate vesicle transport from the Golgi apparatus to the cell surface, and thus affects cellulose microfibril orientation and cell elongation
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	cell elongation	OsKinesin-13A Is an Active Microtubule Depolymerase Involved in Glume Length Regulation via Affecting Cell Elongation.	OsKinesin-13A Is an Active Microtubule Depolymerase Involved in Glume Length Regulation via Affecting Cell Elongation.
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	cell elongation	OsKinesin-13A Is an Active Microtubule Depolymerase Involved in Glume Length Regulation via Affecting Cell Elongation.	Thus, our results suggest that OsKinesin-13A utilizes its microtubule depolymerization activity to promote microtubule turnover, which may not only influence transverse orientation of cortical microtubules but also facilitate vesicle transport from the Golgi apparatus to the cell surface, and thus affects cellulose microfibril orientation and cell elongation
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	grain	An EMS-induced new sequence variant, TEMS5032, in the coding region of SRS3 gene leads to shorter grain length in rice (Oryza sativa L.).	An EMS-induced new sequence variant, TEMS5032, in the coding region of SRS3 gene leads to shorter grain length in rice (Oryza sativa L.).
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	grain	An EMS-induced new sequence variant, TEMS5032, in the coding region of SRS3 gene leads to shorter grain length in rice (Oryza sativa L.).	 In the present study, we characterized and mapped a short and bold grained mutant and named it as TEMS5032, as the mutant is a result of EMS-induced transition from C to T at the 5032nd bp of SRS3 gene, which is known to affect grain size in rice
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	grain length	An EMS-induced new sequence variant, TEMS5032, in the coding region of SRS3 gene leads to shorter grain length in rice (Oryza sativa L.).	An EMS-induced new sequence variant, TEMS5032, in the coding region of SRS3 gene leads to shorter grain length in rice (Oryza sativa L.).
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	grain size	An EMS-induced new sequence variant, TEMS5032, in the coding region of SRS3 gene leads to shorter grain length in rice (Oryza sativa L.).	 In the present study, we characterized and mapped a short and bold grained mutant and named it as TEMS5032, as the mutant is a result of EMS-induced transition from C to T at the 5032nd bp of SRS3 gene, which is known to affect grain size in rice
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	growth	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 BHS1 was down-regulated at RNA and protein level upon exogenous BR treatment, and proteasome inhibitor MG132 delayed the BHS1 degradation, indicating that both the transcriptional and posttranscriptional regulation machineries are involved in BHS1-mediated regulation of plant growth and development
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	development	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 BHS1 was down-regulated at RNA and protein level upon exogenous BR treatment, and proteasome inhibitor MG132 delayed the BHS1 degradation, indicating that both the transcriptional and posttranscriptional regulation machineries are involved in BHS1-mediated regulation of plant growth and development
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	grain	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 BHS1 encodes the kinesin-13a protein and regulates grain length
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	grain length	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 BHS1 encodes the kinesin-13a protein and regulates grain length
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	BR	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 We found that bhs1 was hypersensitive to BR, while BHS1-overexpression was less sensitive to BR compare to WT
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	BR	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 BHS1 was down-regulated at RNA and protein level upon exogenous BR treatment, and proteasome inhibitor MG132 delayed the BHS1 degradation, indicating that both the transcriptional and posttranscriptional regulation machineries are involved in BHS1-mediated regulation of plant growth and development
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	BR	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 Together, these results suggest that BHS1 is a novel component which is involved in negative regulation of the BR signaling downstream player of BRI1
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	BR signaling	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 Together, these results suggest that BHS1 is a novel component which is involved in negative regulation of the BR signaling downstream player of BRI1
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	plant growth	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 BHS1 was down-regulated at RNA and protein level upon exogenous BR treatment, and proteasome inhibitor MG132 delayed the BHS1 degradation, indicating that both the transcriptional and posttranscriptional regulation machineries are involved in BHS1-mediated regulation of plant growth and development
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	 BR 	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 We found that bhs1 was hypersensitive to BR, while BHS1-overexpression was less sensitive to BR compare to WT
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	 BR 	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 BHS1 was down-regulated at RNA and protein level upon exogenous BR treatment, and proteasome inhibitor MG132 delayed the BHS1 degradation, indicating that both the transcriptional and posttranscriptional regulation machineries are involved in BHS1-mediated regulation of plant growth and development
SRS3|OsKINESIN-13A|BHS1	Os05g0154700	LOC_Os05g06280	 BR 	The kinesin-13 protein BR HYPERSENSITIVE 1 is a negative brassinosteroid signaling component regulating rice growth and development.	 Together, these results suggest that BHS1 is a novel component which is involved in negative regulation of the BR signaling downstream player of BRI1
SRT702|Sir2	Os12g0179800	LOC_Os12g07950	cell death	Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background	Candidate gene prediction based on introgressed regions in K354 revealed genotype-dependent CT enhancement mechanisms, associated with Sir2, OsFAD7, OsWAK112d, and programmed cell death (PCD) related genes, present in CT IL K354 but absent in its recurrent parent C418
SRWD1	Os08g0497600	LOC_Os08g38880	salt stress	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	By analysis with microarray data, we found that a gene encoding a novel protein containing five WD40 repeats, was regulated by salt stress in rice and named as SRWD1 (Salt responsive WD40 protein 1)
SRWD1	Os08g0497600	LOC_Os08g38880	salt stress	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	Further, we found that SRWD1 was regulated with different patterns by salt stress in two rice cultivars responding differently to salt stress
SRWD1	Os08g0497600	LOC_Os08g38880	salt	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	By analysis with microarray data, we found that a gene encoding a novel protein containing five WD40 repeats, was regulated by salt stress in rice and named as SRWD1 (Salt responsive WD40 protein 1)
SRWD1	Os08g0497600	LOC_Os08g38880	salt	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	Further, we found that SRWD1 was regulated with different patterns by salt stress in two rice cultivars responding differently to salt stress
SRWD2	Os02g0721600	LOC_Os02g48964	cellular activities	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	The higher accumulations for SRWD2 and SRWD3 mRNAs in all rice tissues detected suggested they might play basic roles in maintaining cellular activities, such as cytoskeletal dynamics, protein trafficking, nuclear export, ribosomal RNA biogenesis and chromatin modification and transcription
SRWD3	Os06g0171900	LOC_Os06g07540	shoot	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	For SRWD3, it showed higher expression level in shoot and endosperm.
SRWD3	Os06g0171900	LOC_Os06g07540	endosperm	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	For SRWD3, it showed higher expression level in shoot and endosperm.
SRWD3	Os06g0171900	LOC_Os06g07540	abiotic stress	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	Finally, we found SRWD3 specifically contained RSRE which was a recently identified cis-acting element that rapidly responds to biotic and abiotic stress
SRWD3	Os06g0171900	LOC_Os06g07540	biotic stress	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	Finally, we found SRWD3 specifically contained RSRE which was a recently identified cis-acting element that rapidly responds to biotic and abiotic stress
SRWD3	Os06g0171900	LOC_Os06g07540	cellular activities	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	The higher accumulations for SRWD2 and SRWD3 mRNAs in all rice tissues detected suggested they might play basic roles in maintaining cellular activities, such as cytoskeletal dynamics, protein trafficking, nuclear export, ribosomal RNA biogenesis and chromatin modification and transcription
SRWD4	Os08g0408200	LOC_Os08g31560	anther	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	For SRWD4, we found higher expression level in anther and endosperm.
SRWD4	Os08g0408200	LOC_Os08g31560	endosperm	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	For SRWD4, we found higher expression level in anther and endosperm.
SRWD5	Os03g0386000	LOC_Os03g26870	embryo development	SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)	The highest expression of SRWD5 in embryo suggested it might play an important role in embryo development.
SRZ1	Os02g0203700	LOC_Os02g10920	drought	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	SRZ1 was expressed with high level in leaves and markedly repressed by salt, cold, drought and abcisic acid stresses but not by salicylic acid and blast inoculation in rice seedlings
SRZ1	Os02g0203700	LOC_Os02g10920	seedling	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	SRZ1 was expressed with high level in leaves and markedly repressed by salt, cold, drought and abcisic acid stresses but not by salicylic acid and blast inoculation in rice seedlings
SRZ1	Os02g0203700	LOC_Os02g10920	abiotic stress	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	Ectopic expression of SRZ1 in tobacco plants repressed expression of abiotic stress-related genes including osmotin, NtERB10B, NtERB10C, and increased plant sensitivity to cold and salt stresses
SRZ1	Os02g0203700	LOC_Os02g10920	abiotic stress	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	This study indicates that SRZ1 and its relatives in plants may play negative roles in abiotic stress signaling and the down-regulation of them might be crucial for plant tolerance against stresses
SRZ1	Os02g0203700	LOC_Os02g10920	salt stress	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	Ectopic expression of SRZ1 in tobacco plants repressed expression of abiotic stress-related genes including osmotin, NtERB10B, NtERB10C, and increased plant sensitivity to cold and salt stresses
SRZ1	Os02g0203700	LOC_Os02g10920	salicylic acid	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	SRZ1 was expressed with high level in leaves and markedly repressed by salt, cold, drought and abcisic acid stresses but not by salicylic acid and blast inoculation in rice seedlings
SRZ1	Os02g0203700	LOC_Os02g10920	salt	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	SRZ1 was expressed with high level in leaves and markedly repressed by salt, cold, drought and abcisic acid stresses but not by salicylic acid and blast inoculation in rice seedlings
SRZ1	Os02g0203700	LOC_Os02g10920	salt	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	Ectopic expression of SRZ1 in tobacco plants repressed expression of abiotic stress-related genes including osmotin, NtERB10B, NtERB10C, and increased plant sensitivity to cold and salt stresses
SRZ1	Os02g0203700	LOC_Os02g10920	blast	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	SRZ1 was expressed with high level in leaves and markedly repressed by salt, cold, drought and abcisic acid stresses but not by salicylic acid and blast inoculation in rice seedlings
SS1|ONAC025	Os11g0512000	LOC_Os11g31330	shoot apical meristem	SUPER STARCHY1/ONAC025 participates in rice grain filling	Furthermore, rice transgenic plants ectopically expressing SS1/ ONAC025 have a plantlet lethal phenotype with hampered vegetative growth, but increased tillers and an altered shoot apical meristem structure.
SS1|ONAC025	Os11g0512000	LOC_Os11g31330	grain filling	SUPER STARCHY1/ONAC025 participates in rice grain filling	The article shows that SS1/ ONAC025 is a seed specific gene promoting grain filling in rice, and negatively affecting vegetative growth.
SS1|ONAC025	Os11g0512000	LOC_Os11g31330	vegetative	SUPER STARCHY1/ONAC025 participates in rice grain filling	The article shows that SS1/ ONAC025 is a seed specific gene promoting grain filling in rice, and negatively affecting vegetative growth.
SS1|ONAC025	Os11g0512000	LOC_Os11g31330	seed development	SUPER STARCHY1/ONAC025 participates in rice grain filling	In short, the expression pattern of the reporter gene, driven by the promoter of SS1/ ONAC025, indicated an important role of this gene in seed development, which has been explored in detail in this paper.
SS1|ONAC025	Os11g0512000	LOC_Os11g31330	transcriptional repressor	SUPER STARCHY1/ONAC025 participates in rice grain filling	A repression in the activation ability of rGAL4 on fusion with SS1/ ONAC025 suggests that SS1/ ONAC025 functions as a transcriptional repressor in yeast.
SSD1	Os03g0302900	LOC_Os03g19080	root	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	ssd1 exhibits pleiotropic defects in elongation of various organs such as stems, roots, leaves, and flowers
SSD1	Os03g0302900	LOC_Os03g19080	dwarf	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	In this study we analyzed a novel dwarf mutant, ssd1, of which phenotype is different from typical GA- or BR-related dwarf phenotype
SSD1	Os03g0302900	LOC_Os03g19080	dwarf	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	Map-based cloning and complementation test demonstrated that the dwarf phenotype in ssd1 mutant was caused by insertion of retrotransposon in a gene, which encodes plant-specific protein with unknown biochemical function
SSD1	Os03g0302900	LOC_Os03g19080	flower	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	ssd1 exhibits pleiotropic defects in elongation of various organs such as stems, roots, leaves, and flowers
SSD1	Os03g0302900	LOC_Os03g19080	stem	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	ssd1 exhibits pleiotropic defects in elongation of various organs such as stems, roots, leaves, and flowers
SSD1	Os03g0302900	LOC_Os03g19080	cell division	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	ssd1 also shows abnormal cell files and shapes, which suggests defects of normal cell division in the mutant
SSD1	Os03g0302900	LOC_Os03g19080	cell division	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	Our results demonstrate that SSD1 controls plant elongation by controlling cell division in higher plants
SSD1	Os03g0302900	LOC_Os03g19080	cell division	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice
SSG4	Os01g0179400	LOC_Os01g08420	starch	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	In this study, we report a novel rice (Oryza sativa) mutant called substandard starch grain4 (ssg4) that develops enlarged SGs in the endosperm
SSG4	Os01g0179400	LOC_Os01g08420	starch	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	Enlargement of SGs in ssg4 was also observed in other starch-accumulating tissues such as pollen grains, root caps, and young pericarps
SSG4	Os01g0179400	LOC_Os01g08420	starch	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	SSG4 will be a useful molecular tool for future starch breeding and biotechnology
SSG4	Os01g0179400	LOC_Os01g08420	grain	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	In this study, we report a novel rice (Oryza sativa) mutant called substandard starch grain4 (ssg4) that develops enlarged SGs in the endosperm
SSG4	Os01g0179400	LOC_Os01g08420	grain	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	Enlargement of SGs in ssg4 was also observed in other starch-accumulating tissues such as pollen grains, root caps, and young pericarps
SSG4	Os01g0179400	LOC_Os01g08420	breeding	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	SSG4 will be a useful molecular tool for future starch breeding and biotechnology
SSG4	Os01g0179400	LOC_Os01g08420	pollen	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	Enlargement of SGs in ssg4 was also observed in other starch-accumulating tissues such as pollen grains, root caps, and young pericarps
SSG4	Os01g0179400	LOC_Os01g08420	pericarp	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	Enlargement of SGs in ssg4 was also observed in other starch-accumulating tissues such as pollen grains, root caps, and young pericarps
SSG4	Os01g0179400	LOC_Os01g08420	root	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	Enlargement of SGs in ssg4 was also observed in other starch-accumulating tissues such as pollen grains, root caps, and young pericarps
SSG4	Os01g0179400	LOC_Os01g08420	endosperm	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	In this study, we report a novel rice (Oryza sativa) mutant called substandard starch grain4 (ssg4) that develops enlarged SGs in the endosperm
SSG4	Os01g0179400	LOC_Os01g08420	grain	Substandard starch grain4 may function in amyloplast development by influencing starch and lipid metabolism in rice endosperm.	 The results of this study suggest that SSG4 influences the regulation of starch and lipid metabolism as well as amyloplast development, a finding that is useful for potential genetic improvement of rice grain quality in future starch and lipid breeding and biotechnology
SSG4	Os01g0179400	LOC_Os01g08420	starch	Substandard starch grain4 may function in amyloplast development by influencing starch and lipid metabolism in rice endosperm.	 The results of this study suggest that SSG4 influences the regulation of starch and lipid metabolism as well as amyloplast development, a finding that is useful for potential genetic improvement of rice grain quality in future starch and lipid breeding and biotechnology
SSG4	Os01g0179400	LOC_Os01g08420	quality	Substandard starch grain4 may function in amyloplast development by influencing starch and lipid metabolism in rice endosperm.	 The results of this study suggest that SSG4 influences the regulation of starch and lipid metabolism as well as amyloplast development, a finding that is useful for potential genetic improvement of rice grain quality in future starch and lipid breeding and biotechnology
SSG4	Os01g0179400	LOC_Os01g08420	breeding	Substandard starch grain4 may function in amyloplast development by influencing starch and lipid metabolism in rice endosperm.	 The results of this study suggest that SSG4 influences the regulation of starch and lipid metabolism as well as amyloplast development, a finding that is useful for potential genetic improvement of rice grain quality in future starch and lipid breeding and biotechnology
SSG4	Os01g0179400	LOC_Os01g08420	grain quality	Substandard starch grain4 may function in amyloplast development by influencing starch and lipid metabolism in rice endosperm.	 The results of this study suggest that SSG4 influences the regulation of starch and lipid metabolism as well as amyloplast development, a finding that is useful for potential genetic improvement of rice grain quality in future starch and lipid breeding and biotechnology
ST01	Os11g0514100	LOC_Os11g31500	young panicles	Stvb-i, a Rice Gene Conferring Durable Resistance to Rice stripe viru s, Protects Plant Growth From Heat Stress	ST01 of St No. 1 and Os11g31500 of Nipponbare were expressed mainly in young panicles.
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	mitochondria	STRIPE2 encodes a putative dCMP deaminase that plays an important role in chloroplast development in rice.	Subcellular localization assay showed that the ST2 protein was located in mitochondria
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	map-based cloning	STRIPE2 encodes a putative dCMP deaminase that plays an important role in chloroplast development in rice.	The ST2 gene was finely confined to a 27-kb region on chromosome 1 by the map-based cloning strategy and a 5-bp deletion in Os01g0765000 was identified by sequence analysis
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	chloroplast	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	The expression of nuclear and plastid genome replication genes was down-regulated under decreased dTTP, and together with decreased cell proliferation and defective chloroplast development in the alr mutant this demonstrated the molecular and physiological roles of DCD-mediated dNTP pool balance in plant development
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	development	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	development	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	The expression of nuclear and plastid genome replication genes was down-regulated under decreased dTTP, and together with decreased cell proliferation and defective chloroplast development in the alr mutant this demonstrated the molecular and physiological roles of DCD-mediated dNTP pool balance in plant development
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	plant development	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	plant development	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	The expression of nuclear and plastid genome replication genes was down-regulated under decreased dTTP, and together with decreased cell proliferation and defective chloroplast development in the alr mutant this demonstrated the molecular and physiological roles of DCD-mediated dNTP pool balance in plant development
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	map-based cloning	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	Map-based cloning and complementation revealed that ALR encodes a DCD protein
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	cell cycle	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	chloroplast development	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	The expression of nuclear and plastid genome replication genes was down-regulated under decreased dTTP, and together with decreased cell proliferation and defective chloroplast development in the alr mutant this demonstrated the molecular and physiological roles of DCD-mediated dNTP pool balance in plant development
ST2|OsDCD|ALR	Os01g0765000	LOC_Os01g55974	cell proliferation	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	The expression of nuclear and plastid genome replication genes was down-regulated under decreased dTTP, and together with decreased cell proliferation and defective chloroplast development in the alr mutant this demonstrated the molecular and physiological roles of DCD-mediated dNTP pool balance in plant development
STAR1	Os06g0695800	LOC_Os06g48060	Al tolerance	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	A yeast one-hybrid assay showed that ART1 has a transcriptional activation potential and interacts with the promoter region of STAR1, an important factor in rice Al tolerance
STAR1	Os06g0695800	LOC_Os06g48060	Al tolerance	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice	Microarray analysis revealed 31 downstream transcripts regulated by ART1, including STAR1 and 2 and a couple of homologs of Al tolerance genes in other plants
STAR1	Os06g0695800	LOC_Os06g48060	root	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	Both STAR1 and STAR2 are expressed mainly in the roots and are specifically induced by Al exposure
STAR1	Os06g0695800	LOC_Os06g48060	root	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	Expression in onion epidermal cells, rice protoplasts, and yeast showed that STAR1 interacts with STAR2 to form a complex that localizes to the vesicle membranes of all root cells, except for those in the epidermal layer of the mature zone
STAR1	Os06g0695800	LOC_Os06g48060	root	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	Furthermore, addition of exogenous UDP-glucose rescued root growth in the star1 mutant exposed to Al
STAR1	Os06g0695800	LOC_Os06g48060	Al tolerance	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	Here, we report that two genes, STAR1 (for sensitive to Al rhizotoxicity1) and STAR2, are responsible for Al tolerance in rice
STAR1	Os06g0695800	LOC_Os06g48060	transporter	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	STAR1 encodes a nucleotide binding domain, while STAR2 encodes a transmembrane domain, of a bacterial-type ATP binding cassette (ABC) transporter
STAR1	Os06g0695800	LOC_Os06g48060	transporter	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	These results indicate that STAR1 and STAR2 form a complex that functions as an ABC transporter, which is required for detoxification of Al in rice
STAR1	Os06g0695800	LOC_Os06g48060	growth	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	Furthermore, addition of exogenous UDP-glucose rescued root growth in the star1 mutant exposed to Al
STAR2	Os05g0119000	LOC_Os05g02750	transporter	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	STAR1 encodes a nucleotide binding domain, while STAR2 encodes a transmembrane domain, of a bacterial-type ATP binding cassette (ABC) transporter
STAR2	Os05g0119000	LOC_Os05g02750	transporter	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	These results indicate that STAR1 and STAR2 form a complex that functions as an ABC transporter, which is required for detoxification of Al in rice
STAR2	Os05g0119000	LOC_Os05g02750	root	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	Both STAR1 and STAR2 are expressed mainly in the roots and are specifically induced by Al exposure
STAR2	Os05g0119000	LOC_Os05g02750	root	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	Expression in onion epidermal cells, rice protoplasts, and yeast showed that STAR1 interacts with STAR2 to form a complex that localizes to the vesicle membranes of all root cells, except for those in the epidermal layer of the mature zone
STAR2	Os05g0119000	LOC_Os05g02750	Al tolerance	A bacterial-type ABC transporter is involved in aluminum tolerance in rice	Here, we report that two genes, STAR1 (for sensitive to Al rhizotoxicity1) and STAR2, are responsible for Al tolerance in rice
STD1	Os02g0810200	LOC_Os02g56540	development	Reduction of ATPase activity in the rice kinesin protein Stemless Dwarf1 inhibits cell division and organ development.	Therefore, these results indicate that the MT-dependent ATPase activity is indispensible for STD1 in regulating normal cell division and organ development
STD1	Os02g0810200	LOC_Os02g56540	ATPase	Reduction of ATPase activity in the rice kinesin protein Stemless Dwarf1 inhibits cell division and organ development.	In the std1 mutant, the substitution of Val-40-Glu in the motor domain of STD1 significantly reduced its MT-dependent ATPase activity
STD1	Os02g0810200	LOC_Os02g56540	ATPase	Reduction of ATPase activity in the rice kinesin protein Stemless Dwarf1 inhibits cell division and organ development.	Therefore, these results indicate that the MT-dependent ATPase activity is indispensible for STD1 in regulating normal cell division and organ development
STD1	Os02g0810200	LOC_Os02g56540	map-based cloning	Reduction of ATPase activity in the rice kinesin protein Stemless Dwarf1 inhibits cell division and organ development.	Map-based cloning revealed that STD1 encodes a phragmoplast-associated kinesin-related protein, a homolog of the Arabidopsis thaliana PAKRP2, and is mainly expressed in the actively dividing tissues
STD1	Os02g0810200	LOC_Os02g56540	cell division	Reduction of ATPase activity in the rice kinesin protein Stemless Dwarf1 inhibits cell division and organ development.	Therefore, these results indicate that the MT-dependent ATPase activity is indispensible for STD1 in regulating normal cell division and organ development
STH1	Os05g0590300	LOC_Os05g51240	salt	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 We found that STH1 regulates fatty acid metabolic homeostasis, probably by catalyzing the hydrolytic degradation of fatty acids, which contributes to salt tolerance
STH1	Os05g0590300	LOC_Os05g51240	salt	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Meanwhile, we demonstrated that STH1 forms a protein complex with D3 and a vital regulatory factor in salt tolerance, OsHAL3, to regulate the protein abundance of OsHAL3 via the 26S proteasome pathway
STH1	Os05g0590300	LOC_Os05g51240	salt	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Furthermore, we revealed that STH1 also serves as a co-activator with the floral integrator gene Heading date 1 to balance the expression of the florigen gene Heading date 3a under different circumstances, thus coordinating the regulation of salt tolerance and heading date
STH1	Os05g0590300	LOC_Os05g51240	salt	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Notably, the allele of STH1 associated with enhanced salt tolerance and high yield is found in some African rice accessions but barely in Asian cultivars
STH1	Os05g0590300	LOC_Os05g51240	tolerance	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 We found that STH1 regulates fatty acid metabolic homeostasis, probably by catalyzing the hydrolytic degradation of fatty acids, which contributes to salt tolerance
STH1	Os05g0590300	LOC_Os05g51240	tolerance	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Furthermore, we revealed that STH1 also serves as a co-activator with the floral integrator gene Heading date 1 to balance the expression of the florigen gene Heading date 3a under different circumstances, thus coordinating the regulation of salt tolerance and heading date
STH1	Os05g0590300	LOC_Os05g51240	tolerance	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Notably, the allele of STH1 associated with enhanced salt tolerance and high yield is found in some African rice accessions but barely in Asian cultivars
STH1	Os05g0590300	LOC_Os05g51240	yield	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Notably, the allele of STH1 associated with enhanced salt tolerance and high yield is found in some African rice accessions but barely in Asian cultivars
STH1	Os05g0590300	LOC_Os05g51240	salt tolerance	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 We found that STH1 regulates fatty acid metabolic homeostasis, probably by catalyzing the hydrolytic degradation of fatty acids, which contributes to salt tolerance
STH1	Os05g0590300	LOC_Os05g51240	salt tolerance	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Meanwhile, we demonstrated that STH1 forms a protein complex with D3 and a vital regulatory factor in salt tolerance, OsHAL3, to regulate the protein abundance of OsHAL3 via the 26S proteasome pathway
STH1	Os05g0590300	LOC_Os05g51240	salt tolerance	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Furthermore, we revealed that STH1 also serves as a co-activator with the floral integrator gene Heading date 1 to balance the expression of the florigen gene Heading date 3a under different circumstances, thus coordinating the regulation of salt tolerance and heading date
STH1	Os05g0590300	LOC_Os05g51240	salt tolerance	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Notably, the allele of STH1 associated with enhanced salt tolerance and high yield is found in some African rice accessions but barely in Asian cultivars
STH1	Os05g0590300	LOC_Os05g51240	floral	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Furthermore, we revealed that STH1 also serves as a co-activator with the floral integrator gene Heading date 1 to balance the expression of the florigen gene Heading date 3a under different circumstances, thus coordinating the regulation of salt tolerance and heading date
STH1	Os05g0590300	LOC_Os05g51240	heading date	An α/β hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	 Furthermore, we revealed that STH1 also serves as a co-activator with the floral integrator gene Heading date 1 to balance the expression of the florigen gene Heading date 3a under different circumstances, thus coordinating the regulation of salt tolerance and heading date
STK	Os09g0572600	LOC_Os09g39930	stem	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 STK was highest expressed in the stem at the heading stage
STK	Os09g0572600	LOC_Os09g39930	Kinase	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.
STK	Os09g0572600	LOC_Os09g39930	Kinase	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Previous reports have demonstrated that overexpression of an RLCK gene SALT TOLERANCE KINASE (STK) enhances salt tolerance in rice, and that STK may regulate the expression of GST (Glutathione S-transferase) genes
STK	Os09g0572600	LOC_Os09g39930	kinase	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.
STK	Os09g0572600	LOC_Os09g39930	kinase	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Previous reports have demonstrated that overexpression of an RLCK gene SALT TOLERANCE KINASE (STK) enhances salt tolerance in rice, and that STK may regulate the expression of GST (Glutathione S-transferase) genes
STK	Os09g0572600	LOC_Os09g39930	stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Overexpression of STK in rice increased tolerance to salt stress and oxidative stress by increasing ROS scavenging ability and ABA sensitivity
STK	Os09g0572600	LOC_Os09g39930	stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 In contrast, CRISPR/Cas9-mediated knockout of STK increased the sensitivity of rice to salt stress and oxidative stress
STK	Os09g0572600	LOC_Os09g39930	stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Transcriptome sequencing analysis suggested that STK increased the expression of GST genes (LOC_Os03g17480, LOC_Os10g38140 and LOC_Os10g38710) under salt stress
STK	Os09g0572600	LOC_Os09g39930	stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 CONCLUSIONS: These findings suggest that STK plays a positive regulatory role in salt stress tolerance by inducing antioxidant defense and associated with the ABA signaling pathway in rice
STK	Os09g0572600	LOC_Os09g39930	defense	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 CONCLUSIONS: These findings suggest that STK plays a positive regulatory role in salt stress tolerance by inducing antioxidant defense and associated with the ABA signaling pathway in rice
STK	Os09g0572600	LOC_Os09g39930	oxidative stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Overexpression of STK in rice increased tolerance to salt stress and oxidative stress by increasing ROS scavenging ability and ABA sensitivity
STK	Os09g0572600	LOC_Os09g39930	oxidative stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 In contrast, CRISPR/Cas9-mediated knockout of STK increased the sensitivity of rice to salt stress and oxidative stress
STK	Os09g0572600	LOC_Os09g39930	salt	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.
STK	Os09g0572600	LOC_Os09g39930	salt	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Previous reports have demonstrated that overexpression of an RLCK gene SALT TOLERANCE KINASE (STK) enhances salt tolerance in rice, and that STK may regulate the expression of GST (Glutathione S-transferase) genes
STK	Os09g0572600	LOC_Os09g39930	salt	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Overexpression of STK in rice increased tolerance to salt stress and oxidative stress by increasing ROS scavenging ability and ABA sensitivity
STK	Os09g0572600	LOC_Os09g39930	salt	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 In contrast, CRISPR/Cas9-mediated knockout of STK increased the sensitivity of rice to salt stress and oxidative stress
STK	Os09g0572600	LOC_Os09g39930	salt	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Transcriptome sequencing analysis suggested that STK increased the expression of GST genes (LOC_Os03g17480, LOC_Os10g38140 and LOC_Os10g38710) under salt stress
STK	Os09g0572600	LOC_Os09g39930	salt	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 CONCLUSIONS: These findings suggest that STK plays a positive regulatory role in salt stress tolerance by inducing antioxidant defense and associated with the ABA signaling pathway in rice
STK	Os09g0572600	LOC_Os09g39930	tolerance	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.
STK	Os09g0572600	LOC_Os09g39930	tolerance	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Previous reports have demonstrated that overexpression of an RLCK gene SALT TOLERANCE KINASE (STK) enhances salt tolerance in rice, and that STK may regulate the expression of GST (Glutathione S-transferase) genes
STK	Os09g0572600	LOC_Os09g39930	tolerance	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Overexpression of STK in rice increased tolerance to salt stress and oxidative stress by increasing ROS scavenging ability and ABA sensitivity
STK	Os09g0572600	LOC_Os09g39930	tolerance	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 CONCLUSIONS: These findings suggest that STK plays a positive regulatory role in salt stress tolerance by inducing antioxidant defense and associated with the ABA signaling pathway in rice
STK	Os09g0572600	LOC_Os09g39930	oxidative	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Overexpression of STK in rice increased tolerance to salt stress and oxidative stress by increasing ROS scavenging ability and ABA sensitivity
STK	Os09g0572600	LOC_Os09g39930	oxidative	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 In contrast, CRISPR/Cas9-mediated knockout of STK increased the sensitivity of rice to salt stress and oxidative stress
STK	Os09g0572600	LOC_Os09g39930	ABA	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 RESULTS: The expression of STK was rapidly induced by ABA
STK	Os09g0572600	LOC_Os09g39930	ABA	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Overexpression of STK in rice increased tolerance to salt stress and oxidative stress by increasing ROS scavenging ability and ABA sensitivity
STK	Os09g0572600	LOC_Os09g39930	ABA	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 CONCLUSIONS: These findings suggest that STK plays a positive regulatory role in salt stress tolerance by inducing antioxidant defense and associated with the ABA signaling pathway in rice
STK	Os09g0572600	LOC_Os09g39930	salt tolerance	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.
STK	Os09g0572600	LOC_Os09g39930	salt tolerance	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Previous reports have demonstrated that overexpression of an RLCK gene SALT TOLERANCE KINASE (STK) enhances salt tolerance in rice, and that STK may regulate the expression of GST (Glutathione S-transferase) genes
STK	Os09g0572600	LOC_Os09g39930	salt stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Overexpression of STK in rice increased tolerance to salt stress and oxidative stress by increasing ROS scavenging ability and ABA sensitivity
STK	Os09g0572600	LOC_Os09g39930	salt stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 In contrast, CRISPR/Cas9-mediated knockout of STK increased the sensitivity of rice to salt stress and oxidative stress
STK	Os09g0572600	LOC_Os09g39930	salt stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Transcriptome sequencing analysis suggested that STK increased the expression of GST genes (LOC_Os03g17480, LOC_Os10g38140 and LOC_Os10g38710) under salt stress
STK	Os09g0572600	LOC_Os09g39930	salt stress	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 CONCLUSIONS: These findings suggest that STK plays a positive regulatory role in salt stress tolerance by inducing antioxidant defense and associated with the ABA signaling pathway in rice
STK	Os09g0572600	LOC_Os09g39930	stress tolerance	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 CONCLUSIONS: These findings suggest that STK plays a positive regulatory role in salt stress tolerance by inducing antioxidant defense and associated with the ABA signaling pathway in rice
STK	Os09g0572600	LOC_Os09g39930	plasma membrane	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 STK was localized at the plasma membrane
STK	Os09g0572600	LOC_Os09g39930	 ABA 	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 Overexpression of STK in rice increased tolerance to salt stress and oxidative stress by increasing ROS scavenging ability and ABA sensitivity
STK	Os09g0572600	LOC_Os09g39930	 ABA 	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 CONCLUSIONS: These findings suggest that STK plays a positive regulatory role in salt stress tolerance by inducing antioxidant defense and associated with the ABA signaling pathway in rice
STK	Os09g0572600	LOC_Os09g39930	antioxidant defense	Receptor-Like Cytoplasmic Kinase STK Confers Salt Tolerance in Rice.	 CONCLUSIONS: These findings suggest that STK plays a positive regulatory role in salt stress tolerance by inducing antioxidant defense and associated with the ABA signaling pathway in rice
Stn7	Os05g0549100	LOC_Os05g47560	Kinase	The STN8 kinase-PBCP phosphatase system is responsible for high-light-induced reversible phosphorylation of the PSII inner antenna subunit CP29 in rice.	Different from the case of the major LHCII antenna complex, the STN7 kinase and its related PPH1 phosphatase were proven not to be involved in CP29 phosphorylation, indicating that a different set of enzymes act in the high-light response
STR1	Os09g0401100	LOC_Os09g23640	transporter	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Mutation of either of the Oryza sativa (rice) ABCG transporters blocked arbuscule growth of different AM fungi at a small and stunted stage, recapitulating the phenotype of Medicago truncatula stunted arbuscule 1 and 2 (str1 and str2) mutants that are deficient in homologous ABCG genes
STR1	Os09g0401100	LOC_Os09g23640	transporter	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice
STR1	Os09g0401100	LOC_Os09g23640	root	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Analogous to STR1 and STR2, at the root cortex level, the antiSTR1 transcript is specifically detected in arbusculated cells, suggesting unexpected modes of STR1 regulation in rice
STR1	Os09g0401100	LOC_Os09g23640	growth	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Mutation of either of the Oryza sativa (rice) ABCG transporters blocked arbuscule growth of different AM fungi at a small and stunted stage, recapitulating the phenotype of Medicago truncatula stunted arbuscule 1 and 2 (str1 and str2) mutants that are deficient in homologous ABCG genes
STR1	Os09g0401100	LOC_Os09g23640	growth	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Malnutrition of the fungus underlying limited arbuscular growth was excluded by the absence of complementation of the str1 phenotype by wild-type nurse plants
STR1	Os09g0401100	LOC_Os09g23640	strigolactone	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Strigolactones have previously been hypothesized to operate as intracellular hyphal branching signals and possible substrates of STR1 and STR2
STR1	Os09g0401100	LOC_Os09g23640	strigolactone	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	However, full arbuscule development in the strigolactone biosynthesis mutants d10 and d17 suggested strigolactones to be unlikely substrates of STR1/STR2
STR1	Os09g0401100	LOC_Os09g23640	branching	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Strigolactones have previously been hypothesized to operate as intracellular hyphal branching signals and possible substrates of STR1 and STR2
STR2	Os07g0191600	LOC_Os07g09384	growth	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Mutation of either of the Oryza sativa (rice) ABCG transporters blocked arbuscule growth of different AM fungi at a small and stunted stage, recapitulating the phenotype of Medicago truncatula stunted arbuscule 1 and 2 (str1 and str2) mutants that are deficient in homologous ABCG genes
STR2	Os07g0191600	LOC_Os07g09384	strigolactone	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Strigolactones have previously been hypothesized to operate as intracellular hyphal branching signals and possible substrates of STR1 and STR2
STR2	Os07g0191600	LOC_Os07g09384	strigolactone	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	However, full arbuscule development in the strigolactone biosynthesis mutants d10 and d17 suggested strigolactones to be unlikely substrates of STR1/STR2
STR2	Os07g0191600	LOC_Os07g09384	transporter	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Mutation of either of the Oryza sativa (rice) ABCG transporters blocked arbuscule growth of different AM fungi at a small and stunted stage, recapitulating the phenotype of Medicago truncatula stunted arbuscule 1 and 2 (str1 and str2) mutants that are deficient in homologous ABCG genes
STR2	Os07g0191600	LOC_Os07g09384	transporter	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice
STR2	Os07g0191600	LOC_Os07g09384	root	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Analogous to STR1 and STR2, at the root cortex level, the antiSTR1 transcript is specifically detected in arbusculated cells, suggesting unexpected modes of STR1 regulation in rice
STR2	Os07g0191600	LOC_Os07g09384	branching	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice	Strigolactones have previously been hypothesized to operate as intracellular hyphal branching signals and possible substrates of STR1 and STR2
STRK1	Os04g0540900	LOC_Os04g45730	growth	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Moreover, overexpression of STRK1 in rice not only improved growth at the seedling stage but also markedly limited the grain yield loss under salt stress conditions
STRK1	Os04g0540900	LOC_Os04g45730	grain	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Moreover, overexpression of STRK1 in rice not only improved growth at the seedling stage but also markedly limited the grain yield loss under salt stress conditions
STRK1	Os04g0540900	LOC_Os04g45730	seedling	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Moreover, overexpression of STRK1 in rice not only improved growth at the seedling stage but also markedly limited the grain yield loss under salt stress conditions
STRK1	Os04g0540900	LOC_Os04g45730	salt	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice
STRK1	Os04g0540900	LOC_Os04g45730	salt	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Our findings demonstrate that STRK1 improves salt and oxidative tolerance by phosphorylating and activating CatC and thereby regulating H2O2 homeostasis
STRK1	Os04g0540900	LOC_Os04g45730	salt	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Moreover, overexpression of STRK1 in rice not only improved growth at the seedling stage but also markedly limited the grain yield loss under salt stress conditions
STRK1	Os04g0540900	LOC_Os04g45730	tolerance	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice
STRK1	Os04g0540900	LOC_Os04g45730	tolerance	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Our findings demonstrate that STRK1 improves salt and oxidative tolerance by phosphorylating and activating CatC and thereby regulating H2O2 homeostasis
STRK1	Os04g0540900	LOC_Os04g45730	grain yield	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Moreover, overexpression of STRK1 in rice not only improved growth at the seedling stage but also markedly limited the grain yield loss under salt stress conditions
STRK1	Os04g0540900	LOC_Os04g45730	yield	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Moreover, overexpression of STRK1 in rice not only improved growth at the seedling stage but also markedly limited the grain yield loss under salt stress conditions
STRK1	Os04g0540900	LOC_Os04g45730	oxidative	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Our findings demonstrate that STRK1 improves salt and oxidative tolerance by phosphorylating and activating CatC and thereby regulating H2O2 homeostasis
STRK1	Os04g0540900	LOC_Os04g45730	salt tolerance	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice
STRK1	Os04g0540900	LOC_Os04g45730	salt stress	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Moreover, overexpression of STRK1 in rice not only improved growth at the seedling stage but also markedly limited the grain yield loss under salt stress conditions
STRK1	Os04g0540900	LOC_Os04g45730	stress	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Moreover, overexpression of STRK1 in rice not only improved growth at the seedling stage but also markedly limited the grain yield loss under salt stress conditions
STRK1	Os04g0540900	LOC_Os04g45730	homeostasis	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice
STRK1	Os04g0540900	LOC_Os04g45730	homeostasis	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Our findings demonstrate that STRK1 improves salt and oxidative tolerance by phosphorylating and activating CatC and thereby regulating H2O2 homeostasis
STRK1	Os04g0540900	LOC_Os04g45730	Kinase	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice
STRK1	Os04g0540900	LOC_Os04g45730	plasma membrane	The Receptor-like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, thereby Regulating H2O2 Homeostasis and Improving Salt Tolerance in Rice	Our results show that STRK1 anchors and interacts with CatC at the plasma membrane via palmitoylation
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	fertility	SWOLLEN TAPETUM AND STERILITY 1 Is Required for Tapetum Degeneration and Pollen Wall Formation in Rice.	 Collectively, our results indicate that STS1 is an important factor for lipid biosynthesis in reproduction, providing a target for the artificial control of male fertility in hybrid rice breeding and insight into the function of DUF726-containing protein in plants
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	pollen	SWOLLEN TAPETUM AND STERILITY 1 Is Required for Tapetum Degeneration and Pollen Wall Formation in Rice.	 Moreover, STS1 interacts with Polyketide Synthase 2 (OsPKS2) and Acyl-CoA Synthetase 12 (OsACOS12), two enzymes crucial in lipidic sporopollenin biosynthesis in pollen wall formation, suggesting a potentially lipidic metabolon for sporopollenin biosynthesis in rice
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	anther	SWOLLEN TAPETUM AND STERILITY 1 Is Required for Tapetum Degeneration and Pollen Wall Formation in Rice.	 Lipidomic and transcriptomic analyses showed that STS1 is involved in anther lipid homeostasis
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	homeostasis	SWOLLEN TAPETUM AND STERILITY 1 Is Required for Tapetum Degeneration and Pollen Wall Formation in Rice.	 Lipidomic and transcriptomic analyses showed that STS1 is involved in anther lipid homeostasis
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	breeding	SWOLLEN TAPETUM AND STERILITY 1 Is Required for Tapetum Degeneration and Pollen Wall Formation in Rice.	 Collectively, our results indicate that STS1 is an important factor for lipid biosynthesis in reproduction, providing a target for the artificial control of male fertility in hybrid rice breeding and insight into the function of DUF726-containing protein in plants
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	pollen wall	SWOLLEN TAPETUM AND STERILITY 1 Is Required for Tapetum Degeneration and Pollen Wall Formation in Rice.	 Moreover, STS1 interacts with Polyketide Synthase 2 (OsPKS2) and Acyl-CoA Synthetase 12 (OsACOS12), two enzymes crucial in lipidic sporopollenin biosynthesis in pollen wall formation, suggesting a potentially lipidic metabolon for sporopollenin biosynthesis in rice
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	development	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 Genes involved in regulating fatty acid synthesis and formation of sporopollenin and pollen exine during anther development showed significantly different expression patterns in oslddt1 plants
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	pollen	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 oslddt1 plants show complete pollen abortion resulting from delayed degradation of the tapetum and blocked formation of Ubisch bodies and pollen walls
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	pollen	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 Genes involved in regulating fatty acid synthesis and formation of sporopollenin and pollen exine during anther development showed significantly different expression patterns in oslddt1 plants
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	anther	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 Genes involved in regulating fatty acid synthesis and formation of sporopollenin and pollen exine during anther development showed significantly different expression patterns in oslddt1 plants
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	anther	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	22 % compared to WT, indicating that OsLDDT1 is involved in fatty acid synthesis and affects formation of the anther epidermis
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	sterility	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 Our results provide as deeper understanding of the role of OsLDDT1 in regulating male sterility and also provide materials for hybrid rice breeding
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	tapetum	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 In this study, we isolated the male-sterile rice mutant oslddt1 (leaked and delayed degraded tapetum 1)
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	tapetum	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 oslddt1 plants show complete pollen abortion resulting from delayed degradation of the tapetum and blocked formation of Ubisch bodies and pollen walls
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	pollen wall	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 oslddt1 plants show complete pollen abortion resulting from delayed degradation of the tapetum and blocked formation of Ubisch bodies and pollen walls
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	breeding	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 Our results provide as deeper understanding of the role of OsLDDT1 in regulating male sterility and also provide materials for hybrid rice breeding
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	anther development	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 Genes involved in regulating fatty acid synthesis and formation of sporopollenin and pollen exine during anther development showed significantly different expression patterns in oslddt1 plants
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	male sterility	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 Our results provide as deeper understanding of the role of OsLDDT1 in regulating male sterility and also provide materials for hybrid rice breeding
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	epidermis	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	22 % compared to WT, indicating that OsLDDT1 is involved in fatty acid synthesis and affects formation of the anther epidermis
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	hydrolase	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	 OsLDDT1 (LOC_Os03g02170) encodes a DUF726 containing protein of unknown function with highly conserved transmembrane and α/β Hydrolase domains
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	tapetum degradation	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice
STS1|OsLDDT1|OsSTS1	Os03g0112800	LOC_Os03g02170	pollen formation	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice
Sub1A	None	None	ethylene	Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice	Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
Sub1A	None	None	transcription factor	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Acclimation responses to submergence are coordinated by the submergence-inducible Sub1A, which encodes an ethylene-responsive factor-type transcription factor (ERF)
Sub1A	None	None	 ABA 	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	Overexpression of SUB1A augmented ABA responsiveness, thereby activating stress-inducible gene expression
Sub1A	None	None	transcription factor	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors
Sub1A	None	None	transcription factor	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	SUB1A, an ERF transcription factor found in limited rice accessions, dampens ethylene production and gibberellic acid responsiveness during submergence, economizing carbohydrate reserves and significantly prolonging endurance
Sub1A	None	None	submergence	Regulatory interplay of the Sub1A and CIPK15 pathways in the regulation of alpha-amylase production in flooded rice plants	Rice varieties possessing the submergence 1A (Sub1A) gene display a distinct flooding-tolerant phenotype, associated with lower carbohydrate consumption and restriction of the fast-elongation phenotype typical of flooding-intolerant rice varieties
Sub1A	None	None	vegetative	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	Comparative analysis of genotypes with and without SUB1A revealed that SUB1A enhanced recovery from drought at the vegetative stage through reduction of leaf water loss and lipid peroxidation and increased expression of genes associated with acclimation to dehydration
Sub1A	None	None	salicylic acid	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Jasmonate and salicylic acid are positive regulators of leaf senescence, but ectopic overexpression of SUB1A dampened responsiveness to both hormones in the context of senescence
Sub1A	None	None	salicylic acid	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Overall, SUB1A genotypes displayed altered responses to prolonged darkness by limiting ethylene production and responsiveness to jasmonate and salicylic acid, thereby dampening the breakdown of chlorophyll, carbohydrates, and the accumulation of senescence-associated messenger RNAs
Sub1A	None	None	oxidative	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	Consistently, SUB1A increased the abundance of transcripts encoding ROS scavenging enzymes, resulting in enhanced tolerance to oxidative stress
Sub1A	None	None	ethylene	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	SUB1 encodes two or three transcription factors of the group VII ethylene response factor family: SUB1A, SUB1B and SUB1C
Sub1A	None	None	ethylene	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	The presence of SUB1A-1 and its strong submergence-triggered ethylene-mediated induction confers submergence tolerance through a quiescence survival strategy that inhibits gibberellin (GA)-induced carbohydrate consumption and elongation growth
Sub1A	None	None	leaf	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	Comparative analysis of genotypes with and without SUB1A revealed that SUB1A enhanced recovery from drought at the vegetative stage through reduction of leaf water loss and lipid peroxidation and increased expression of genes associated with acclimation to dehydration
Sub1A	None	None	 ABA 	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	The submergence-stimulated decrease in ABA content was Sub1A-independent, whereas GA-mediated underwater elongation was significantly restricted by Sub1A
Sub1A	None	None	submergence	Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A	Specific expression in the growing part of rice leaves is well in agreement with the role of SUB1A in suppressing leaf elongation under submergence
Sub1A	None	None	submergence	Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A	Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A
Sub1A	None	None	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Acclimation responses to submergence are coordinated by the submergence-inducible Sub1A, which encodes an ethylene-responsive factor-type transcription factor (ERF)
Sub1A	None	None	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Sub1A is limited to tolerant genotypes and sufficient to confer submergence tolerance to intolerant accessions
Sub1A	None	None	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Here we evaluated the role of Sub1A in the integration of ethylene, abscisic acid (ABA), and gibberellin (GA) signaling during submergence
Sub1A	None	None	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	The submergence-stimulated decrease in ABA content was Sub1A-independent, whereas GA-mediated underwater elongation was significantly restricted by Sub1A
Sub1A	None	None	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	In the Sub1A overexpression line, SLR1 protein levels declined under prolonged submergence but were accompanied by an increase in accumulation of SLRL1, which lacks the DELLA domain
Sub1A	None	None	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Together, these results demonstrate that Sub1A limits ethylene-promoted GA responsiveness during submergence by augmenting accumulation of the GA signaling repressors SLR1 and SLRL1
Sub1A	None	None	submergence	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice
Sub1A	None	None	transcription factor	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	SUB1 encodes two or three transcription factors of the group VII ethylene response factor family: SUB1A, SUB1B and SUB1C
Sub1A	None	None	transcription factor	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism
Sub1A	None	None	oxidative	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	A delay of leaf senescence conferred by SUB1A can contribute to the enhancement of tolerance to submergence, drought, and oxidative stress
Sub1A	None	None	leaf	Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A	Initial analyses of leaf samples failed to reveal a clear association of SUB1A transcript abundance and tolerance
Sub1A	None	None	leaf	Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A	Specific expression in the growing part of rice leaves is well in agreement with the role of SUB1A in suppressing leaf elongation under submergence
Sub1A	None	None	drought	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	Comparative analysis of genotypes with and without SUB1A revealed that SUB1A enhanced recovery from drought at the vegetative stage through reduction of leaf water loss and lipid peroxidation and increased expression of genes associated with acclimation to dehydration
Sub1A	None	None	drought	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	SUB1A also restrained accumulation of reactive oxygen species (ROS) in aerial tissue during drought and desubmergence
Sub1A	None	None	drought	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	Therefore, in addition to providing robust submergence tolerance, SUB1A improves survival of rapid dehydration following desubmergence and water deficit during drought
Sub1A	None	None	drought	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice
Sub1A	None	None	growth	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	The presence of SUB1A-1 and its strong submergence-triggered ethylene-mediated induction confers submergence tolerance through a quiescence survival strategy that inhibits gibberellin (GA)-induced carbohydrate consumption and elongation growth
Sub1A	None	None	gibberellin	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Here we evaluated the role of Sub1A in the integration of ethylene, abscisic acid (ABA), and gibberellin (GA) signaling during submergence
Sub1A	None	None	gibberellin	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice
Sub1A	None	None	 ga 	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	As in rice transgenic plants that ectopically express SUB1A-1, Arabidopsis transgenic plants that constitutively express SUB1A displayed GA insensitivity and abscisic acid hypersensitivity
Sub1A	None	None	submergence	Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond	The objectives of this study were to (a) develop mega varieties with Sub1 introgression that are submergence tolerant, (b) assess the performance of Sub1 in different genetic backgrounds, (c) determine the roles of the Sub1A and Sub1C genes in conferring tolerance, and (d) assess the level of tolerance in F(1) hybrids heterozygous for the Sub1A-1-tolerant allele
Sub1A	None	None	starch	Regulatory interplay of the Sub1A and CIPK15 pathways in the regulation of alpha-amylase production in flooded rice plants	In adult plants Sub1A and CIPK15 may perhaps play an antagonistic role in terms of carbohydrate consumption, with Sub1A acting as a starch degradation repressor and CIPK15 as an activator
Sub1A	None	None	drought tolerance	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice
Sub1A	None	None	senescence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Here, we evaluated the influence of the submergence tolerance regulator, SUBMERGENCE1A (SUB1A), in the acclimation responses during leaf senescence caused by prolonged darkness in rice (Oryza sativa)
Sub1A	None	None	senescence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Physiological analysis revealed that SUB1A postpones dark-induced senescence through the maintenance of chlorophyll and carbohydrate reserves in photosynthetic tissue
Sub1A	None	None	senescence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	SUB1A also restricted the transcript accumulation of representative senescence-associated genes
Sub1A	None	None	senescence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Jasmonate and salicylic acid are positive regulators of leaf senescence, but ectopic overexpression of SUB1A dampened responsiveness to both hormones in the context of senescence
Sub1A	None	None	senescence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	We found that ethylene accelerated senescence stimulated by darkness and jasmonate, although SUB1A significantly restrained dark-induced ethylene accumulation
Sub1A	None	None	senescence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Overall, SUB1A genotypes displayed altered responses to prolonged darkness by limiting ethylene production and responsiveness to jasmonate and salicylic acid, thereby dampening the breakdown of chlorophyll, carbohydrates, and the accumulation of senescence-associated messenger RNAs
Sub1A	None	None	senescence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	A delay of leaf senescence conferred by SUB1A can contribute to the enhancement of tolerance to submergence, drought, and oxidative stress
Sub1A	None	None	senescence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice
Sub1A	None	None	submergence	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors	Genotypes carrying the Sub1A-1 allele are tolerant of prolonged submergence
Sub1A	None	None	submergence	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors	To elucidate the mechanism of Sub1A-1-mediated tolerance, we performed transcriptome analyses comparing the temporal submergence response of Sub1A-1-containing tolerant M202(Sub1) with the intolerant isoline M202 lacking this gene
Sub1A	None	None	submergence	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors	Of particular interest were a set of APETALA2 (AP2)/ERF family transcriptional regulators that are associated with the Sub1A-1-mediated response upon submergence
Sub1A	None	None	submergence	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors	These results confirm that the presence of Sub1A-1 impacts multiple pathways of response to submergence
Sub1A	None	None	submergence	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors
Sub1A	None	None	floral	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	Observation of a delayed flowering phenotype in lines over-expressing SUB1A led to the finding that inhibition of floral initiation is a component of the quiescence survival strategy in rice
Sub1A	None	None	ethylene	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Acclimation responses to submergence are coordinated by the submergence-inducible Sub1A, which encodes an ethylene-responsive factor-type transcription factor (ERF)
Sub1A	None	None	ethylene	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Here we evaluated the role of Sub1A in the integration of ethylene, abscisic acid (ABA), and gibberellin (GA) signaling during submergence
Sub1A	None	None	ethylene	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	In the presence of Sub1A, the increase in these GA signaling repressors and decrease in GA responsiveness were stimulated by ethylene, which promotes Sub1A expression
Sub1A	None	None	ethylene	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Together, these results demonstrate that Sub1A limits ethylene-promoted GA responsiveness during submergence by augmenting accumulation of the GA signaling repressors SLR1 and SLRL1
Sub1A	None	None	leaf	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Here, we evaluated the influence of the submergence tolerance regulator, SUBMERGENCE1A (SUB1A), in the acclimation responses during leaf senescence caused by prolonged darkness in rice (Oryza sativa)
Sub1A	None	None	leaf	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Genotypes with conditional and ectopic overexpression of SUB1A significantly delayed loss of leaf color and enhanced recovery from dark stress
Sub1A	None	None	leaf	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Jasmonate and salicylic acid are positive regulators of leaf senescence, but ectopic overexpression of SUB1A dampened responsiveness to both hormones in the context of senescence
Sub1A	None	None	leaf	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	A delay of leaf senescence conferred by SUB1A can contribute to the enhancement of tolerance to submergence, drought, and oxidative stress
Sub1A	None	None	leaf	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice
Sub1A	None	None	submergence	Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice	Overexpression of Sub1A-1 in a submergence-intolerant O
Sub1A	None	None	submergence	Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice	japonica conferred enhanced tolerance to the plants, downregulation of Sub1C and upregulation of Alcohol dehydrogenase 1 (Adh1), indicating that Sub1A-1 is a primary determinant of submergence tolerance
Sub1A	None	None	submergence	Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice	Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
Sub1A	None	None	ethylene	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	SUB1A, an ERF transcription factor found in limited rice accessions, dampens ethylene production and gibberellic acid responsiveness during submergence, economizing carbohydrate reserves and significantly prolonging endurance
Sub1A	None	None	gibberellin	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	The presence of SUB1A-1 and its strong submergence-triggered ethylene-mediated induction confers submergence tolerance through a quiescence survival strategy that inhibits gibberellin (GA)-induced carbohydrate consumption and elongation growth
Sub1A	None	None	drought	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	A delay of leaf senescence conferred by SUB1A can contribute to the enhancement of tolerance to submergence, drought, and oxidative stress
Sub1A	None	None	submergence	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	The presence of SUB1A-1 and its strong submergence-triggered ethylene-mediated induction confers submergence tolerance through a quiescence survival strategy that inhibits gibberellin (GA)-induced carbohydrate consumption and elongation growth
Sub1A	None	None	submergence	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism
Sub1A	None	None	flower	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	Observation of a delayed flowering phenotype in lines over-expressing SUB1A led to the finding that inhibition of floral initiation is a component of the quiescence survival strategy in rice
Sub1A	None	None	flower	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism
Sub1A	None	None	jasmonate	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Jasmonate and salicylic acid are positive regulators of leaf senescence, but ectopic overexpression of SUB1A dampened responsiveness to both hormones in the context of senescence
Sub1A	None	None	jasmonate	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	We found that ethylene accelerated senescence stimulated by darkness and jasmonate, although SUB1A significantly restrained dark-induced ethylene accumulation
Sub1A	None	None	jasmonate	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Overall, SUB1A genotypes displayed altered responses to prolonged darkness by limiting ethylene production and responsiveness to jasmonate and salicylic acid, thereby dampening the breakdown of chlorophyll, carbohydrates, and the accumulation of senescence-associated messenger RNAs
Sub1A	None	None	ethylene	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	We found that ethylene accelerated senescence stimulated by darkness and jasmonate, although SUB1A significantly restrained dark-induced ethylene accumulation
Sub1A	None	None	ethylene	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Overall, SUB1A genotypes displayed altered responses to prolonged darkness by limiting ethylene production and responsiveness to jasmonate and salicylic acid, thereby dampening the breakdown of chlorophyll, carbohydrates, and the accumulation of senescence-associated messenger RNAs
Sub1A	None	None	submergence	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	SUB1A, an ERF transcription factor found in limited rice accessions, dampens ethylene production and gibberellic acid responsiveness during submergence, economizing carbohydrate reserves and significantly prolonging endurance
Sub1A	None	None	submergence	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	Desubmergence caused the upregulation of gene transcripts associated with acclimation to dehydration, with higher induction in SUB1A genotypes
Sub1A	None	None	submergence	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	SUB1A also restrained accumulation of reactive oxygen species (ROS) in aerial tissue during drought and desubmergence
Sub1A	None	None	submergence	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	Therefore, in addition to providing robust submergence tolerance, SUB1A improves survival of rapid dehydration following desubmergence and water deficit during drought
Sub1A	None	None	submergence	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice	The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice
Sub1A	None	None	 ga 	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Notably Sub1A increased the accumulation of the GA signaling repressors Slender Rice-1 (SLR1) and SLR1 Like-1 (SLRL1) and concomitantly diminished GA-inducible gene expression under submerged conditions
Sub1A	None	None	 ga 	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	In the presence of Sub1A, the increase in these GA signaling repressors and decrease in GA responsiveness were stimulated by ethylene, which promotes Sub1A expression
Sub1A	None	None	 ga 	Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice	Together, these results demonstrate that Sub1A limits ethylene-promoted GA responsiveness during submergence by augmenting accumulation of the GA signaling repressors SLR1 and SLRL1
Sub1A	None	None	submergence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	Here, we evaluated the influence of the submergence tolerance regulator, SUBMERGENCE1A (SUB1A), in the acclimation responses during leaf senescence caused by prolonged darkness in rice (Oryza sativa)
Sub1A	None	None	submergence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	A delay of leaf senescence conferred by SUB1A can contribute to the enhancement of tolerance to submergence, drought, and oxidative stress
Sub1A	None	None	submergence	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice
Sub1A	None	None	submergence	The key regulator of submergence tolerance, SUB1A, promotes photosynthetic and metabolic recovery from submergence damage in rice leaves.	Our findings illuminate the significant role of SUB1A in active physiological recovery upon desubmergence, a component of enhanced tolerance to submergence
Sub1A	None	None	tolerance	The key regulator of submergence tolerance, SUB1A, promotes photosynthetic and metabolic recovery from submergence damage in rice leaves.	Our findings illuminate the significant role of SUB1A in active physiological recovery upon desubmergence, a component of enhanced tolerance to submergence
Sub1A	None	None	submergence	A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts Submergence Tolerance in Rice.	The ethylene response factor-like protein SUB1A orchestrates a plethora of responses during submergence stress tolerance in rice
Sub1A	None	None	tolerance	A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts Submergence Tolerance in Rice.	The ethylene response factor-like protein SUB1A orchestrates a plethora of responses during submergence stress tolerance in rice
Sub1A	None	None	ethylene	A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts Submergence Tolerance in Rice.	The ethylene response factor-like protein SUB1A orchestrates a plethora of responses during submergence stress tolerance in rice
Sub1A	None	None	stress	A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts Submergence Tolerance in Rice.	The ethylene response factor-like protein SUB1A orchestrates a plethora of responses during submergence stress tolerance in rice
Sub1A	None	None	ethylene response	A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts Submergence Tolerance in Rice.	The ethylene response factor-like protein SUB1A orchestrates a plethora of responses during submergence stress tolerance in rice
Sub1A	None	None	stress tolerance	A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts Submergence Tolerance in Rice.	The ethylene response factor-like protein SUB1A orchestrates a plethora of responses during submergence stress tolerance in rice
Sub1A	None	None	submergence	Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.	Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.
Sub1A	None	None	submergence	Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.	 Here, transcriptomic and metabolomic analyses were conducted to identify mechanisms by which SUB1A improves physiological function over the 24 hours following a sub-lethal submergence event
Sub1A	None	None	submergence	Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.	 Evaluation of near-isogenic genotypes after submergence and over a day of re-aeration demonstrated that SUB1A transiently constrains the remodeling of cellular activities associated with growth
Sub1A	None	None	submergence	Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.	 The involvement of low energy sensing during submergence and recovery was supported by dynamics in trehalose-6-phosphate (T6P) and mRNAs encoding key enzymes and signaling proteins, which were modulated by SUB1A
Sub1A	None	None	growth	Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.	 Evaluation of near-isogenic genotypes after submergence and over a day of re-aeration demonstrated that SUB1A transiently constrains the remodeling of cellular activities associated with growth
Sub1A	None	None	growth	Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.	 SUB1A promoted recovery of metabolic homeostasis but had limited influence on mRNAs associated with growth processes and photosynthesis
Sub1A	None	None	photosynthesis	Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.	 SUB1A promoted recovery of metabolic homeostasis but had limited influence on mRNAs associated with growth processes and photosynthesis
Sub1A	None	None	homeostasis	Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.	 SUB1A promoted recovery of metabolic homeostasis but had limited influence on mRNAs associated with growth processes and photosynthesis
Sub1A	None	None	nitrogen	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	 In both leaf types, pathways involved in carbohydrate and nitrogen metabolism were suppressed by SUB1A, with more severe restriction in growing leaves that have a greater energy demand if SUB1A is absent
Sub1A	None	None	leaf	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	 In both leaf types, pathways involved in carbohydrate and nitrogen metabolism were suppressed by SUB1A, with more severe restriction in growing leaves that have a greater energy demand if SUB1A is absent
Sub1A	None	None	submergence	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).
Sub1A	None	None	submergence	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	 However, the molecular and physiological functions of SUB1A have been characterized using entire shoot tissues, most of which are mature leaves that do not elongate under submergence
Sub1A	None	None	submergence	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	 To this end, we compared the transcriptomic and hormonal responses to submergence between mature and growing leaves using rice genotypes with and without SUB1A
Sub1A	None	None	shoot	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	 However, the molecular and physiological functions of SUB1A have been characterized using entire shoot tissues, most of which are mature leaves that do not elongate under submergence
Sub1A	None	None	auxin	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	 In mature leaves, submergence-induced auxin accumulation was suppressed by SUB1A
Sub1A	None	None	mature leaves	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	 However, the molecular and physiological functions of SUB1A have been characterized using entire shoot tissues, most of which are mature leaves that do not elongate under submergence
Sub1A	None	None	mature leaves	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	 In mature leaves, submergence-induced auxin accumulation was suppressed by SUB1A
Sub1A	None	None	tolerance	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).
Sub1A	None	None	submergence tolerance	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).
Sub1B	Os09g0287000	LOC_Os09g11480	submergence tolerance	Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond	Sequencing the Sub1 region in an FR13A-derived line revealed the presence of three genes encoding putative ethylene responsive factors (ERF), Sub1A, Sub1B and Sub1C and Sub1A were subsequently identified as the major determinant of submergence tolerance
Sub1C	Os09g0286600	LOC_Os09g11460	submergence	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	SUB1C is invariably present and acts downstream of the enhancement of GA responsiveness during submergence
Sub1C	Os09g0286600	LOC_Os09g11460	submergence	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism
Sub1C	Os09g0286600	LOC_Os09g11460	transcription factor	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	SUB1 encodes two or three transcription factors of the group VII ethylene response factor family: SUB1A, SUB1B and SUB1C
Sub1C	Os09g0286600	LOC_Os09g11460	transcription factor	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism
Sub1C	Os09g0286600	LOC_Os09g11460	ethylene	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	SUB1 encodes two or three transcription factors of the group VII ethylene response factor family: SUB1A, SUB1B and SUB1C
Sub1C	Os09g0286600	LOC_Os09g11460	flower	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism
Sub1C	Os09g0286600	LOC_Os09g11460	ga	Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism	SUB1C is invariably present and acts downstream of the enhancement of GA responsiveness during submergence
Sub1C	Os09g0286600	LOC_Os09g11460	submergence	Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond	The objectives of this study were to (a) develop mega varieties with Sub1 introgression that are submergence tolerant, (b) assess the performance of Sub1 in different genetic backgrounds, (c) determine the roles of the Sub1A and Sub1C genes in conferring tolerance, and (d) assess the level of tolerance in F(1) hybrids heterozygous for the Sub1A-1-tolerant allele
SUI2|ES5	Os05g0554400	LOC_Os05g48060	vegetative	SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice	Overexpression of SUI1 and SUI2 caused outgrowths of internodes during vegetative development, and we showed that expression patterns of Oryza Sativa Homeobox 15 (OSH15) and Histone4 were impaired
SUI2|ES5	Os05g0554400	LOC_Os05g48060	growth	SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice	Overexpression of SUI1 and SUI2 caused outgrowths of internodes during vegetative development, and we showed that expression patterns of Oryza Sativa Homeobox 15 (OSH15) and Histone4 were impaired
SUI2|ES5	Os05g0554400	LOC_Os05g48060	leaf	ES5 is involved in the regulation of phosphatidylserine synthesis and impacts on early senescence in rice (Oryza sativa L.).	We have characterized an early senile mutant es5 (early leaf senescence 5) in rice exhibiting leaf yellowing phenotype after the 4-leaf stage
SUI2|ES5	Os05g0554400	LOC_Os05g48060	leaf senescence	ES5 is involved in the regulation of phosphatidylserine synthesis and impacts on early senescence in rice (Oryza sativa L.).	We have characterized an early senile mutant es5 (early leaf senescence 5) in rice exhibiting leaf yellowing phenotype after the 4-leaf stage
SUI2|ES5	Os05g0554400	LOC_Os05g48060	early leaf senescence	ES5 is involved in the regulation of phosphatidylserine synthesis and impacts on early senescence in rice (Oryza sativa L.).	We have characterized an early senile mutant es5 (early leaf senescence 5) in rice exhibiting leaf yellowing phenotype after the 4-leaf stage
SUI2|ES5	Os05g0554400	LOC_Os05g48060	senescence	ES5 is involved in the regulation of phosphatidylserine synthesis and impacts on early senescence in rice (Oryza sativa L.).	ES5 is involved in the regulation of phosphatidylserine synthesis and impacts on early senescence in rice (Oryza sativa L.).
SUI2|ES5	Os05g0554400	LOC_Os05g48060	senescence	ES5 is involved in the regulation of phosphatidylserine synthesis and impacts on early senescence in rice (Oryza sativa L.).	We have characterized an early senile mutant es5 (early leaf senescence 5) in rice exhibiting leaf yellowing phenotype after the 4-leaf stage
SUI3	Os01g0683500	LOC_Os01g49024|LOC_Os01g49020	PSS domain	SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice	The truncated SUI3 possesses the intact PSS domain indicating that NF1828 is a leaky mutation of SUI3
SUI3	Os01g0683500	LOC_Os01g49024|LOC_Os01g49020	internode development	SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice	This result demonstrates that SUI3 also plays a role in internode development in rice.
SUI3	Os01g0683500	LOC_Os01g49024|LOC_Os01g49020	panicle	SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice	We showed that sui2 mutations and transgenic plants with down-regulation of SUI1, SUI2, and SUI3 impaired the development of the panicle.
SWL1	Os04g0497900	LOC_Os04g42030	chloroplast	A mutable albino allele in rice reveals that formation of thylakoid membranes requires the SNOW-WHITE LEAF1 gene.	The variegated albino phenotype was caused by insertion and excision of nDart1-0 in the 5&#39;-untranslated region of the SWL1 gene predicted to encode an unknown protein with the N-terminal chloroplast transit peptide
SWL1	Os04g0497900	LOC_Os04g42030	chloroplast	A mutable albino allele in rice reveals that formation of thylakoid membranes requires the SNOW-WHITE LEAF1 gene.	This study revealed that SWL1 is essential for the beginning of thylakoid membrane organization during chloroplast development
SWL1	Os04g0497900	LOC_Os04g42030	development	A mutable albino allele in rice reveals that formation of thylakoid membranes requires the SNOW-WHITE LEAF1 gene.	This study revealed that SWL1 is essential for the beginning of thylakoid membrane organization during chloroplast development
SWL1	Os04g0497900	LOC_Os04g42030	chloroplast development	A mutable albino allele in rice reveals that formation of thylakoid membranes requires the SNOW-WHITE LEAF1 gene.	This study revealed that SWL1 is essential for the beginning of thylakoid membrane organization during chloroplast development
SWL1	Os04g0497900	LOC_Os04g42030	stroma	A mutable albino allele in rice reveals that formation of thylakoid membranes requires the SNOW-WHITE LEAF1 gene.	In the swl1 mutant, formations of grana and stroma thylakoids and prolamellar bodies were inhibited
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	Leu-rich repeat receptor kinase	Arbuscular mycorrhiza-specific signaling in rice transcends the common symbiosis signaling pathway	To date, the components identified are a symbiosis Leu-rich repeat receptor kinase (SYMRK), DOES NOT MAKE INFECTION2 (DMI2)
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	AM colonization	Arbuscular mycorrhiza-specific signaling in rice transcends the common symbiosis signaling pathway	This view is supported by the recent observation that rice SYMRK restores AM colonization in the L. japonicus symrk mutant
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	defense response	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	 In contrast, comparable defense responses against chitin heptamer to the wild type were observed in Ossymrk
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	defense	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	 In contrast, comparable defense responses against chitin heptamer to the wild type were observed in Ossymrk
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	immunity	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	 Bimolecular fluorescence complementation studies demonstrating an interaction between OsSYMRK and OsCERK1 indicate that OsSYMRK may play an important role in switching from immunity to symbiosis through the interaction with OsCERK1 in rice
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	AM symbiosis	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	AM symbiosis	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	 The MLD reportedly contributes to symbiosis in Lotus japonicus; however, the contribution of OsSYMRK to AM symbiosis in rice remains unclear
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	symbiosis	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	symbiosis	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	 The MLD reportedly contributes to symbiosis in Lotus japonicus; however, the contribution of OsSYMRK to AM symbiosis in rice remains unclear
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	symbiosis	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	 Bimolecular fluorescence complementation studies demonstrating an interaction between OsSYMRK and OsCERK1 indicate that OsSYMRK may play an important role in switching from immunity to symbiosis through the interaction with OsCERK1 in rice
SYMRK|OsSYMRK	Os07g0568100	LOC_Os07g38070	AM colonization	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	 AM colonization was mostly abolished in Ossymrk with a more severe phenotype than Oscerk1
TA1	Os05g0509700	LOC_Os05g43440	endosperm	Defective mitochondrial function by mutation in THICK ALEURONE 1 encoding a mitochondrion-targeted single-stranded DNA-binding protein leads to increased aleurone cell layers and improved nutrition in rice.	 Cytological analyses revealed that the increased aleurone cell layers in ta1 originate from a developmental switch of subaleurone toward aleurone instead of starchy endosperm in the wild type
TAC1	Os09g0529300	LOC_Os09g35980	tiller	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	OsPIN2-over-expressing plants had suppressed the expression of a gravitropism-related gene OsLazy1 in the shoots, but unaltered expression of OsPIN1b and OsTAC1, which were reported as tiller angle controllers in rice
TAC1	Os09g0529300	LOC_Os09g35980	erect	TAC1, a major quantitative trait locus controlling tiller angle in rice	TAC1 was mapped to a 35-kb region on chromosome 9 using a large F(2) population from crosses between an indica rice, IR24, which displays a relatively spread-out plant architecture, and an introgressed line, IL55, derived from japonica rice Asominori, which displays a compact plant architecture with extremely erect tillers
TAC1	Os09g0529300	LOC_Os09g35980	shoot	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	OsPIN2-over-expressing plants had suppressed the expression of a gravitropism-related gene OsLazy1 in the shoots, but unaltered expression of OsPIN1b and OsTAC1, which were reported as tiller angle controllers in rice
TAC1	Os09g0529300	LOC_Os09g35980	shoot	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The data suggest that OsPIN2 has a distinct auxin-dependent regulation pathway together with OsPIN1b and OsTAC1 controlling rice shoot architecture
TAC1	Os09g0529300	LOC_Os09g35980	tiller	Molecular evolution of the TAC1 gene from rice (Oryza sativa L.)	Our previous work identified Tiller Angle Control 1 (TAC1) as a major quantitative trait locus that controls rice tiller angle
TAC1	Os09g0529300	LOC_Os09g35980	architecture	TAC1, a major quantitative trait locus controlling tiller angle in rice	TAC1 was mapped to a 35-kb region on chromosome 9 using a large F(2) population from crosses between an indica rice, IR24, which displays a relatively spread-out plant architecture, and an introgressed line, IL55, derived from japonica rice Asominori, which displays a compact plant architecture with extremely erect tillers
TAC1	Os09g0529300	LOC_Os09g35980	architecture	TAC1, a major quantitative trait locus controlling tiller angle in rice	5-kb intron from 'AGGA' to 'GGGA' decreases the level of tac1, resulting in a compact plant architecture with a tiller angle close to zero
TAC1	Os09g0529300	LOC_Os09g35980	tiller angle	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	OsPIN2-over-expressing plants had suppressed the expression of a gravitropism-related gene OsLazy1 in the shoots, but unaltered expression of OsPIN1b and OsTAC1, which were reported as tiller angle controllers in rice
TAC1	Os09g0529300	LOC_Os09g35980	tiller angle	Molecular evolution of the TAC1 gene from rice (Oryza sativa L.)	Our previous work identified Tiller Angle Control 1 (TAC1) as a major quantitative trait locus that controls rice tiller angle
TAC1	Os09g0529300	LOC_Os09g35980	shoot architecture	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The data suggest that OsPIN2 has a distinct auxin-dependent regulation pathway together with OsPIN1b and OsTAC1 controlling rice shoot architecture
TAC1	Os09g0529300	LOC_Os09g35980	auxin	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The data suggest that OsPIN2 has a distinct auxin-dependent regulation pathway together with OsPIN1b and OsTAC1 controlling rice shoot architecture
TAC1	Os09g0529300	LOC_Os09g35980	domestication	Molecular evolution of the TAC1 gene from rice (Oryza sativa L.)	00112, respectively, further indicate that TAC1 has been highly conserved during the course of rice domestication
TAC1	Os09g0529300	LOC_Os09g35980	domestication	Molecular evolution of the TAC1 gene from rice (Oryza sativa L.)	A phylogenetic tree derived from TAC1 sequence analysis suggests that the indica and japonica subspecies arose independently during the domestication of wild rice
TAC1	Os09g0529300	LOC_Os09g35980	architecture	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1	The data suggest that OsPIN2 has a distinct auxin-dependent regulation pathway together with OsPIN1b and OsTAC1 controlling rice shoot architecture
TAC1	Os09g0529300	LOC_Os09g35980	tiller	TAC1, a major quantitative trait locus controlling tiller angle in rice	This research demonstrates that tiller angle is controlled by a major quantitative trait locus, TAC1 (Tiller Angle Control 1)
TAC1	Os09g0529300	LOC_Os09g35980	tiller	TAC1, a major quantitative trait locus controlling tiller angle in rice	TAC1 was mapped to a 35-kb region on chromosome 9 using a large F(2) population from crosses between an indica rice, IR24, which displays a relatively spread-out plant architecture, and an introgressed line, IL55, derived from japonica rice Asominori, which displays a compact plant architecture with extremely erect tillers
TAC1	Os09g0529300	LOC_Os09g35980	tiller	TAC1, a major quantitative trait locus controlling tiller angle in rice	5-kb intron from 'AGGA' to 'GGGA' decreases the level of tac1, resulting in a compact plant architecture with a tiller angle close to zero
TAC1	Os09g0529300	LOC_Os09g35980	tiller	TAC1, a major quantitative trait locus controlling tiller angle in rice	TAC1, a major quantitative trait locus controlling tiller angle in rice
TAC1	Os09g0529300	LOC_Os09g35980	tiller angle	TAC1, a major quantitative trait locus controlling tiller angle in rice	This research demonstrates that tiller angle is controlled by a major quantitative trait locus, TAC1 (Tiller Angle Control 1)
TAC1	Os09g0529300	LOC_Os09g35980	tiller angle	TAC1, a major quantitative trait locus controlling tiller angle in rice	5-kb intron from 'AGGA' to 'GGGA' decreases the level of tac1, resulting in a compact plant architecture with a tiller angle close to zero
TAC1	Os09g0529300	LOC_Os09g35980	tiller angle	TAC1, a major quantitative trait locus controlling tiller angle in rice	TAC1, a major quantitative trait locus controlling tiller angle in rice
TAC1	Os09g0529300	LOC_Os09g35980	architecture	Tiller Angle Control 1 Is Essential for the Dynamic Changes in Plant Architecture in Rice.	 Our results reveal that TAC1 is necessary for the dynamic changes in plant architecture, which can guide improvements in plant architecture during the modern super rice breeding
TAC1	Os09g0529300	LOC_Os09g35980	breeding	Tiller Angle Control 1 Is Essential for the Dynamic Changes in Plant Architecture in Rice.	 Our results reveal that TAC1 is necessary for the dynamic changes in plant architecture, which can guide improvements in plant architecture during the modern super rice breeding
TAC1	Os09g0529300	LOC_Os09g35980	plant architecture	Tiller Angle Control 1 Is Essential for the Dynamic Changes in Plant Architecture in Rice.	 Moreover, TAC1 positively regulates loose plant architecture, and high TAC1 expression cannot influence the expression of tested tiller-angle-related genes
TAC1	Os09g0529300	LOC_Os09g35980	plant architecture	Tiller Angle Control 1 Is Essential for the Dynamic Changes in Plant Architecture in Rice.	 Our results reveal that TAC1 is necessary for the dynamic changes in plant architecture, which can guide improvements in plant architecture during the modern super rice breeding
TAC3	Os03g0726700	LOC_Os03g51660	tiller	A Novel Tiller Angle Gene, TAC3, together with TAC1 and D2 Largely Determine the Natural Variation of Tiller Angle in Rice Cultivars.	TAC3 is preferentially expressed in the tiller base
TAC3	Os03g0726700	LOC_Os03g51660	tiller	A Novel Tiller Angle Gene, TAC3, together with TAC1 and D2 Largely Determine the Natural Variation of Tiller Angle in Rice Cultivars.	In conclusion, there is a diverse genetic basis for tiller angle between the two subpopulations, and it is the novel gene TAC3 together with TAC1, D2, and other newly identified genes in this study that controls tiller angle in rice cultivars
TAC3	Os03g0726700	LOC_Os03g51660	tiller angle	A Novel Tiller Angle Gene, TAC3, together with TAC1 and D2 Largely Determine the Natural Variation of Tiller Angle in Rice Cultivars.	In conclusion, there is a diverse genetic basis for tiller angle between the two subpopulations, and it is the novel gene TAC3 together with TAC1, D2, and other newly identified genes in this study that controls tiller angle in rice cultivars
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	shoot gravitropism	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	 TAC4 can regulate rice shoot gravitropism by increasing the indole acetic acid content and affecting the auxin distribution
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	shoot	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	 TAC4 can regulate rice shoot gravitropism by increasing the indole acetic acid content and affecting the auxin distribution
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	auxin	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	auxin	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	 TAC4 can regulate rice shoot gravitropism by increasing the indole acetic acid content and affecting the auxin distribution
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	tiller	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	tiller	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	 The loss of TAC4 function leads to a significant increase in the tiller angle
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	domestication	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	 A sequence analysis revealed that TAC4 has undergone a bottleneck and become fixed in indica cultivars during domestication and improvement
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	R protein	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	 TAC4 encodes a plant-specific, highly conserved nuclear protein
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	tiller angle	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	tiller angle	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice 	 The loss of TAC4 function leads to a significant increase in the tiller angle
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	Kinase	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 We further found that BRs enhance the accumulation of SG2 in the nucleus, and subcellular distribution of SG2 is regulated by GSK2 kinase activity
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	spikelet	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 The decreased grain size was caused by repressed cell expansion in spikelet hulls of the sg2 mutant
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	grain	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 The decreased grain size was caused by repressed cell expansion in spikelet hulls of the sg2 mutant
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	grain	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 In addition, OsOFP19, a negative regulator of grain shape, interacts with SG2 and plays an antagonistic role with SG2 in controlling gene expression and grain size
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	grain	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 Our results indicated that SG2 is a new component of GSK2-related BR signaling response and regulates grain size by interacting with OsOFP19
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	grain size	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 The decreased grain size was caused by repressed cell expansion in spikelet hulls of the sg2 mutant
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	grain size	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 In addition, OsOFP19, a negative regulator of grain shape, interacts with SG2 and plays an antagonistic role with SG2 in controlling gene expression and grain size
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	grain size	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 Our results indicated that SG2 is a new component of GSK2-related BR signaling response and regulates grain size by interacting with OsOFP19
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	BR	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 SG2 is a positive regulator downstream of GSK2 in response to BR signaling, and its mutation causes insensitivity to exogenous BR treatment
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	BR	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 Our results indicated that SG2 is a new component of GSK2-related BR signaling response and regulates grain size by interacting with OsOFP19
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	BR signaling	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 SG2 is a positive regulator downstream of GSK2 in response to BR signaling, and its mutation causes insensitivity to exogenous BR treatment
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	BR signaling	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 Our results indicated that SG2 is a new component of GSK2-related BR signaling response and regulates grain size by interacting with OsOFP19
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	kinase	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 We further found that BRs enhance the accumulation of SG2 in the nucleus, and subcellular distribution of SG2 is regulated by GSK2 kinase activity
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	 BR 	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 SG2 is a positive regulator downstream of GSK2 in response to BR signaling, and its mutation causes insensitivity to exogenous BR treatment
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	 BR 	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 Our results indicated that SG2 is a new component of GSK2-related BR signaling response and regulates grain size by interacting with OsOFP19
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	grain shape	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 In addition, OsOFP19, a negative regulator of grain shape, interacts with SG2 and plays an antagonistic role with SG2 in controlling gene expression and grain size
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	cell expansion	Ribonuclease H-like gene Small Grain2 regulates grain size in rice through brassinosteroids signal pathway.	 The decreased grain size was caused by repressed cell expansion in spikelet hulls of the sg2 mutant
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	lignin	BRITTLE CULM17, a Novel Allele of TAC4, Affects the Mechanical Properties of Rice Plants.	 According to LC-MS/MS analysis of intermediate products of the lignin synthesis pathway, the accumulation of caffeyl alcohol in the osbc17 mutant was significantly higher than in Pingtangheinuo
TAC4|SG2|OsBC17	Os02g0450000	LOC_Os02g25230	lignin	BRITTLE CULM17, a Novel Allele of TAC4, Affects the Mechanical Properties of Rice Plants.	 Caffeyl alcohol can be polymerized to the catechyl lignin monomer by laccase ChLAC8; however, ChLAC8 and OsBC17 are not homologous proteins, which suggests that the osbc17 gene is involved in this process by regulating laccase expression
TAM1|OsPAL9	Os12g0520200	LOC_Os12g33610	tyrosine biosynthesis	The Tyrosine Aminomutase TAM1 Is Required for Tyrosine Biosynthesis in Rice.	The Tyrosine Aminomutase TAM1 Is Required for Tyrosine Biosynthesis in Rice.
TAP|TSD1	Os02g0284500	LOC_Os02g18370	temperature	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 Consistent with its thermosensitive phenotype, TAP expression is induced by high temperature
TAP|TSD1	Os02g0284500	LOC_Os02g18370	development	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 TAP directly promotes the expression of OsYABBY3 (OsYAB3), OsYAB4, and OsYAB5, which encode key transcriptional regulators in panicle and spikelet development
TAP|TSD1	Os02g0284500	LOC_Os02g18370	development	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of osyab4 tap-1 and osyab5 tap-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 The tap mutants display high temperature-dependent reproductive abnormalities, including compromised secondary branch and spikelet initiation and pleiotropic floral organ defects
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 TAP directly promotes the expression of OsYABBY3 (OsYAB3), OsYAB4, and OsYAB5, which encode key transcriptional regulators in panicle and spikelet development
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of osyab4 tap-1 and osyab5 tap-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development
TAP|TSD1	Os02g0284500	LOC_Os02g18370	panicle	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 TAP directly promotes the expression of OsYABBY3 (OsYAB3), OsYAB4, and OsYAB5, which encode key transcriptional regulators in panicle and spikelet development
TAP|TSD1	Os02g0284500	LOC_Os02g18370	panicle	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of osyab4 tap-1 and osyab5 tap-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development
TAP|TSD1	Os02g0284500	LOC_Os02g18370	floral	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 The tap mutants display high temperature-dependent reproductive abnormalities, including compromised secondary branch and spikelet initiation and pleiotropic floral organ defects
TAP|TSD1	Os02g0284500	LOC_Os02g18370	reproductive	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 The tap mutants display high temperature-dependent reproductive abnormalities, including compromised secondary branch and spikelet initiation and pleiotropic floral organ defects
TAP|TSD1	Os02g0284500	LOC_Os02g18370	floral organ	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 The tap mutants display high temperature-dependent reproductive abnormalities, including compromised secondary branch and spikelet initiation and pleiotropic floral organ defects
TAP|TSD1	Os02g0284500	LOC_Os02g18370	transcriptional regulator	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 TAP directly promotes the expression of OsYABBY3 (OsYAB3), OsYAB4, and OsYAB5, which encode key transcriptional regulators in panicle and spikelet development
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet development	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 TAP directly promotes the expression of OsYABBY3 (OsYAB3), OsYAB4, and OsYAB5, which encode key transcriptional regulators in panicle and spikelet development
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet development	THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	 In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of osyab4 tap-1 and osyab5 tap-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development
TAP|TSD1	Os02g0284500	LOC_Os02g18370	transcription factor	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 We isolated a Poaceae-specific FAR-RED ELONGATED HYPOCOTYLS3 (FHY3)/FAR-RED IMPAIRED RESPONSE1 (FAR1)family transcription factor, Thermo-sensitive Spikelet Defects 1 (TSD1), derived from transposase in rice (Oryza sativa) TSD1 was highly expressed in spikelets, induced by heat, and specifically enhanced the thermotolerance of spikelet morphogenesis
TAP|TSD1	Os02g0284500	LOC_Os02g18370	temperature	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 Disrupting TSD1 did not affect vegetative growth but markedly retarded spikelet initiation and development, as well as caused varying degrees of spikelet degeneration, depending on the temperature
TAP|TSD1	Os02g0284500	LOC_Os02g18370	temperature	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 Most tsd1 spikelets were normal at low temperature but gradually degenerated as temperature increased, and all disappeared at high temperature, leading to naked branches
TAP|TSD1	Os02g0284500	LOC_Os02g18370	growth	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 Disrupting TSD1 did not affect vegetative growth but markedly retarded spikelet initiation and development, as well as caused varying degrees of spikelet degeneration, depending on the temperature
TAP|TSD1	Os02g0284500	LOC_Os02g18370	development	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 Notably, the knockout mutant yab5-ko and double mutant tsd1 yab5-ko resembled tsd1 in spikelet appearance and response to temperature, indicating that these genes likely participate in spikelet development through the cooperative TSD1-YABBY module
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 We isolated a Poaceae-specific FAR-RED ELONGATED HYPOCOTYLS3 (FHY3)/FAR-RED IMPAIRED RESPONSE1 (FAR1)family transcription factor, Thermo-sensitive Spikelet Defects 1 (TSD1), derived from transposase in rice (Oryza sativa) TSD1 was highly expressed in spikelets, induced by heat, and specifically enhanced the thermotolerance of spikelet morphogenesis
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 Disrupting TSD1 did not affect vegetative growth but markedly retarded spikelet initiation and development, as well as caused varying degrees of spikelet degeneration, depending on the temperature
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 These YABBY proteins can form either homodimers or heterodimers and play an important role in spikelet morphogenesis, similar to TSD1
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 Notably, the knockout mutant yab5-ko and double mutant tsd1 yab5-ko resembled tsd1 in spikelet appearance and response to temperature, indicating that these genes likely participate in spikelet development through the cooperative TSD1-YABBY module
TAP|TSD1	Os02g0284500	LOC_Os02g18370	vegetative	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 Disrupting TSD1 did not affect vegetative growth but markedly retarded spikelet initiation and development, as well as caused varying degrees of spikelet degeneration, depending on the temperature
TAP|TSD1	Os02g0284500	LOC_Os02g18370	spikelet development	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 Notably, the knockout mutant yab5-ko and double mutant tsd1 yab5-ko resembled tsd1 in spikelet appearance and response to temperature, indicating that these genes likely participate in spikelet development through the cooperative TSD1-YABBY module
TAP|TSD1	Os02g0284500	LOC_Os02g18370	thermotolerance	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	 We isolated a Poaceae-specific FAR-RED ELONGATED HYPOCOTYLS3 (FHY3)/FAR-RED IMPAIRED RESPONSE1 (FAR1)family transcription factor, Thermo-sensitive Spikelet Defects 1 (TSD1), derived from transposase in rice (Oryza sativa) TSD1 was highly expressed in spikelets, induced by heat, and specifically enhanced the thermotolerance of spikelet morphogenesis
TAPE	None	LOC_Os09g03890	pollen	A myosin XI adaptor, TAPE, is essential for pollen tube elongation in rice.	 A CRISPR/Cas9 knockout mutant of TAPE that produced a short PT was sterile, and TAPE was expressed specifically in pollen grains
TAW1	Os10g0478000	LOC_Os10g33780	inflorescence	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	In contrast, reductions in TAWAWA1 (TAW1) activity cause precocious IM abortion and spikelet formation, resulting in the generation of small inflorescences
TAW1	Os10g0478000	LOC_Os10g33780	inflorescence	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	We thus propose that TAW1 is a unique regulator of meristem activity in rice and regulates inflorescence development through the promotion of IM activity and suppression of the phase change to SM identity
TAW1	Os10g0478000	LOC_Os10g33780	spikelet	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	In contrast, reductions in TAWAWA1 (TAW1) activity cause precocious IM abortion and spikelet formation, resulting in the generation of small inflorescences
TAW1	Os10g0478000	LOC_Os10g33780	spikelet	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	TAW1 expression disappears from incipient spikelet meristems (SMs)
TAW1	Os10g0478000	LOC_Os10g33780	shoot	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	TAW1 encodes a nuclear protein of unknown function and shows high levels of expression in the shoot apical meristem, the IM, and the BMs
TAW1	Os10g0478000	LOC_Os10g33780	spikelet meristem	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	TAW1 expression disappears from incipient spikelet meristems (SMs)
TAW1	Os10g0478000	LOC_Os10g33780	shoot apical meristem	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	TAW1 encodes a nuclear protein of unknown function and shows high levels of expression in the shoot apical meristem, the IM, and the BMs
TAW1	Os10g0478000	LOC_Os10g33780	meristem	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	TAW1 encodes a nuclear protein of unknown function and shows high levels of expression in the shoot apical meristem, the IM, and the BMs
TAW1	Os10g0478000	LOC_Os10g33780	meristem	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	TAW1 expression disappears from incipient spikelet meristems (SMs)
TAW1	Os10g0478000	LOC_Os10g33780	meristem	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	We thus propose that TAW1 is a unique regulator of meristem activity in rice and regulates inflorescence development through the promotion of IM activity and suppression of the phase change to SM identity
TAW1	Os10g0478000	LOC_Os10g33780	vegetative	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition	We also demonstrate that members of the SHORT VEGETATIVE PHASE subfamily of MADS-box genes function downstream of TAW1
TCD10	Os10g0421800	LOC_Os10g28600	temperature	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The disruption of TCD10 resulted in an evidently reduced expression of chloroplast-associated genes under cold stress (20C), whereas they did recovered to normal levels at high temperature (32C)
TCD10	Os10g0421800	LOC_Os10g28600	growth	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The TCD10 encodes a novel rice PPR protein, mainly located in chloroplasts, which is important for chloroplast development, growth and the maintenance of photosynthetic electron transport and its disorder would lead to an aberrant chloroplast and abnormal expressions in these genes for chloroplast development and photosynthesis in rice under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	chloroplast	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.
TCD10	Os10g0421800	LOC_Os10g28600	chloroplast	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	In this paper, we characterized a new rice PPR gene mutant tcd10 (thermo-sensitive chlorophyll-deficient mutant 10) that exhibits the albino phenotype, malformed chloroplast and could not survive after the 5-leaf stage when grown at 20C, but does the normal phenotype at 32C
TCD10	Os10g0421800	LOC_Os10g28600	chloroplast	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	These results showed an important role of TCD10 for chloroplast development under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	chloroplast	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The TCD10 encodes a novel rice PPR protein, mainly located in chloroplasts, which is important for chloroplast development, growth and the maintenance of photosynthetic electron transport and its disorder would lead to an aberrant chloroplast and abnormal expressions in these genes for chloroplast development and photosynthesis in rice under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	development	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.
TCD10	Os10g0421800	LOC_Os10g28600	development	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	These results showed an important role of TCD10 for chloroplast development under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	development	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The TCD10 encodes a novel rice PPR protein, mainly located in chloroplasts, which is important for chloroplast development, growth and the maintenance of photosynthetic electron transport and its disorder would lead to an aberrant chloroplast and abnormal expressions in these genes for chloroplast development and photosynthesis in rice under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	map-based cloning	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	Map-based cloning, followed by RNA interference and CRISPR/Cas9 genome editing techniques, revealed that TCD10 encoding a novel PPR protein, mainly localized to the chloroplasts, with 27 PPR motifs, is responsible for the mutant phenotype
TCD10	Os10g0421800	LOC_Os10g28600	photosynthesis	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The TCD10 encodes a novel rice PPR protein, mainly located in chloroplasts, which is important for chloroplast development, growth and the maintenance of photosynthetic electron transport and its disorder would lead to an aberrant chloroplast and abnormal expressions in these genes for chloroplast development and photosynthesis in rice under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	cold stress	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.
TCD10	Os10g0421800	LOC_Os10g28600	cold stress	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The disruption of TCD10 resulted in an evidently reduced expression of chloroplast-associated genes under cold stress (20C), whereas they did recovered to normal levels at high temperature (32C)
TCD10	Os10g0421800	LOC_Os10g28600	cold stress	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	These results showed an important role of TCD10 for chloroplast development under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	cold stress	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The TCD10 encodes a novel rice PPR protein, mainly located in chloroplasts, which is important for chloroplast development, growth and the maintenance of photosynthetic electron transport and its disorder would lead to an aberrant chloroplast and abnormal expressions in these genes for chloroplast development and photosynthesis in rice under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	stress	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The disruption of TCD10 resulted in an evidently reduced expression of chloroplast-associated genes under cold stress (20C), whereas they did recovered to normal levels at high temperature (32C)
TCD10	Os10g0421800	LOC_Os10g28600	stress	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	These results showed an important role of TCD10 for chloroplast development under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	stress	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The TCD10 encodes a novel rice PPR protein, mainly located in chloroplasts, which is important for chloroplast development, growth and the maintenance of photosynthetic electron transport and its disorder would lead to an aberrant chloroplast and abnormal expressions in these genes for chloroplast development and photosynthesis in rice under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	R protein	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	Map-based cloning, followed by RNA interference and CRISPR/Cas9 genome editing techniques, revealed that TCD10 encoding a novel PPR protein, mainly localized to the chloroplasts, with 27 PPR motifs, is responsible for the mutant phenotype
TCD10	Os10g0421800	LOC_Os10g28600	R protein	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The TCD10 encodes a novel rice PPR protein, mainly located in chloroplasts, which is important for chloroplast development, growth and the maintenance of photosynthetic electron transport and its disorder would lead to an aberrant chloroplast and abnormal expressions in these genes for chloroplast development and photosynthesis in rice under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	chloroplast development	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.
TCD10	Os10g0421800	LOC_Os10g28600	chloroplast development	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	These results showed an important role of TCD10 for chloroplast development under cold stress
TCD10	Os10g0421800	LOC_Os10g28600	chloroplast development	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	The TCD10 encodes a novel rice PPR protein, mainly located in chloroplasts, which is important for chloroplast development, growth and the maintenance of photosynthetic electron transport and its disorder would lead to an aberrant chloroplast and abnormal expressions in these genes for chloroplast development and photosynthesis in rice under cold stress
TCD11	Os12g0563200	LOC_Os12g37610	leaf	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	The alteration of leaf color in tcd11 mutants was aligned with chlorophyll (Chl) content and chloroplast development
TCD11	Os12g0563200	LOC_Os12g37610	temperature	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature
TCD11	Os12g0563200	LOC_Os12g37610	temperature	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	In addition, the disruption of TCD11 greatly reduced the transcript levels of certain chloroplasts-associated genes and prevented the assembly of ribosome in chloroplasts at low temperature (20 °C), whereas they recovered to nearly normal levels at high temperature (32 °C)
TCD11	Os12g0563200	LOC_Os12g37610	temperature	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	Thus, our data indicate that TCD11 plays an important role in chloroplast development at low temperature
TCD11	Os12g0563200	LOC_Os12g37610	chloroplast	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature
TCD11	Os12g0563200	LOC_Os12g37610	chloroplast	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	The alteration of leaf color in tcd11 mutants was aligned with chlorophyll (Chl) content and chloroplast development
TCD11	Os12g0563200	LOC_Os12g37610	chloroplast	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	Thus, our data indicate that TCD11 plays an important role in chloroplast development at low temperature
TCD11	Os12g0563200	LOC_Os12g37610	development	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature
TCD11	Os12g0563200	LOC_Os12g37610	development	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	The alteration of leaf color in tcd11 mutants was aligned with chlorophyll (Chl) content and chloroplast development
TCD11	Os12g0563200	LOC_Os12g37610	development	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	Thus, our data indicate that TCD11 plays an important role in chloroplast development at low temperature
TCD11	Os12g0563200	LOC_Os12g37610	map-based cloning	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	The map-based cloning and molecular complementation showed that TCD11 encodes the ribosomal small subunit protein S6 in chloroplasts (RPS6)
TCD11	Os12g0563200	LOC_Os12g37610	chloroplast development	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature
TCD11	Os12g0563200	LOC_Os12g37610	chloroplast development	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	The alteration of leaf color in tcd11 mutants was aligned with chlorophyll (Chl) content and chloroplast development
TCD11	Os12g0563200	LOC_Os12g37610	chloroplast development	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature	Thus, our data indicate that TCD11 plays an important role in chloroplast development at low temperature
TCD3|OsPUS1	Os03g0152700	LOC_Os03g05806	chloroplast	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice
TCD3|OsPUS1	Os03g0152700	LOC_Os03g05806	chloroplast	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice	 The disruption of TCD3 severely affected the transcript levels of various chloroplast-associated genes, as well as ribosomal genes involved in chloroplast rRNA assembly at low temperature (20<U+2009>��C), whereas the transcript levels of these genes were normal at high temperature (32<U+2009>��C)
TCD3|OsPUS1	Os03g0152700	LOC_Os03g05806	temperature	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice
TCD3|OsPUS1	Os03g0152700	LOC_Os03g05806	temperature	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice	 The disruption of TCD3 severely affected the transcript levels of various chloroplast-associated genes, as well as ribosomal genes involved in chloroplast rRNA assembly at low temperature (20<U+2009>��C), whereas the transcript levels of these genes were normal at high temperature (32<U+2009>��C)
TCD3|OsPUS1	Os03g0152700	LOC_Os03g05806	development	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice
TCD3|OsPUS1	Os03g0152700	LOC_Os03g05806	map-based cloning	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice	 Map-based cloning, complementation and knockout tests revealed that TCD3 encodes a chloroplast-localized �� synthase
TCD3|OsPUS1	Os03g0152700	LOC_Os03g05806	chloroplast development	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	leaf	Temperature-sensitive albino gene TCD5, encoding a monooxygenase, affects chloroplast development at low temperatures.	The development of chloroplasts and etioplasts is impaired in tcd5 plants at 20 °C, and the temperature-sensitive period for the albino phenotype is the P4 stage of leaf development
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	temperature	Temperature-sensitive albino gene TCD5, encoding a monooxygenase, affects chloroplast development at low temperatures.	Although the phenotype and temperature dependence of the TCD5 orthologous mutant phenotype were different in rice and Arabidopsis, OsTCD5 could rescue the phenotype of the Arabidopsis mutant, suggesting that TCD5 function is conserved between monocots and dicots
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	leaf development	Temperature-sensitive albino gene TCD5, encoding a monooxygenase, affects chloroplast development at low temperatures.	The development of chloroplasts and etioplasts is impaired in tcd5 plants at 20 °C, and the temperature-sensitive period for the albino phenotype is the P4 stage of leaf development
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	development	Temperature-sensitive albino gene TCD5, encoding a monooxygenase, affects chloroplast development at low temperatures.	The development of chloroplasts and etioplasts is impaired in tcd5 plants at 20 °C, and the temperature-sensitive period for the albino phenotype is the P4 stage of leaf development
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	development	Temperature-sensitive albino gene TCD5, encoding a monooxygenase, affects chloroplast development at low temperatures.	The development of thylakoid membranes is arrested at the mid-P4 stage in tcd5 plants at 20 °C
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	photosynthesis	Temperature-sensitive albino gene TCD5, encoding a monooxygenase, affects chloroplast development at low temperatures.	The transcription of some genes involved in plastid transcription/translation and photosynthesis varied in the tcd5 mutant
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	temperature	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Furthermore, CSV1 transcripts were more abundant in immature than in mature leaves, and they did not markedly increase or decrease with temperature
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	growth	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	The growth of csv1 plants displayed sensitivity to low temperatures
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	growth	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Taken together, our results indicate that CSV1 supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	chloroplast	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Taken together, our results indicate that CSV1 supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	development	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Taken together, our results indicate that CSV1 supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	cold stress	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Taken together, our results indicate that CSV1 supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	stress	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Taken together, our results indicate that CSV1 supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	tillering	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Taken together, our results indicate that CSV1 supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	chloroplast development	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Taken together, our results indicate that CSV1 supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	chloroplast	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	These results provide novel insights into ways in which rice chloroplast development and chlorophyll synthesis are protected by TSV under cold stress
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	development	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	These results provide novel insights into ways in which rice chloroplast development and chlorophyll synthesis are protected by TSV under cold stress
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	map-based cloning	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	We isolated and identified TSV by map-based cloning and rescue experiments, combined with genetic, cytological and molecular biological analyses
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	cold stress	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	The activity of plastid-encoded RNA polymerase (PEP) and the expression of genes participating in chlorophyll synthesis were severely reduced in the tsv mutant under cold stress, but not at normal temperatures
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	cold stress	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	We demonstrated that TSV protects rice chloroplasts from cold stress by interacting with OsTrxZ
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	cold stress	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	These results provide novel insights into ways in which rice chloroplast development and chlorophyll synthesis are protected by TSV under cold stress
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	stress	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	We demonstrated that TSV protects rice chloroplasts from cold stress by interacting with OsTrxZ
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	stress	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	These results provide novel insights into ways in which rice chloroplast development and chlorophyll synthesis are protected by TSV under cold stress
TCD5|CSV1|TSV	Os05g0411200	LOC_Os05g34040	chloroplast development	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	These results provide novel insights into ways in which rice chloroplast development and chlorophyll synthesis are protected by TSV under cold stress
TCD9	Os09g0563300	LOC_Os09g38980	leaf	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	This study characterized a novel rice thermo-sensitive chloroplast development 9 (tcd9) mutant, which exhibited the albino phenotype before the 3-leaf stage grown below 24 degrees C whereas displayed normal green at over 28 degrees C or even at 20 degrees C after 5-leaf stage
TCD9	Os09g0563300	LOC_Os09g38980	leaf	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	Our observations suggest that the nuclear-encoded Cpn60alpha protein TCD9 plays a crucial role in chloroplast development at early leaf stage of rice
TCD9	Os09g0563300	LOC_Os09g38980	leaf	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage
TCD9	Os09g0563300	LOC_Os09g38980	chloroplast	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	This study characterized a novel rice thermo-sensitive chloroplast development 9 (tcd9) mutant, which exhibited the albino phenotype before the 3-leaf stage grown below 24 degrees C whereas displayed normal green at over 28 degrees C or even at 20 degrees C after 5-leaf stage
TCD9	Os09g0563300	LOC_Os09g38980	chloroplast	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	The map-based cloning and molecular complementation tests revealed that the mutation of TCD9 encoding alpha subunit of Cpn60 protein (Cpn60alpha), localized in chloroplasts, was responsible for albino phenotype
TCD9	Os09g0563300	LOC_Os09g38980	chloroplast	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	The transcriptional analysis indicated that all expression levels of the studied genes related to chloroplast development in tcd9 mutant were seriously affected in the albino seedlings at 20 degrees C, whereas some of them recovered into normal levels in green-seedlings at 32 degrees C
TCD9	Os09g0563300	LOC_Os09g38980	chloroplast	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	Our observations suggest that the nuclear-encoded Cpn60alpha protein TCD9 plays a crucial role in chloroplast development at early leaf stage of rice
TCD9	Os09g0563300	LOC_Os09g38980	chloroplast	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage
TCD9	Os09g0563300	LOC_Os09g38980	seedling	Importance of the rice TCD9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	The transcriptional analysis indicated that all expression levels of the studied genes related to chloroplast development in tcd9 mutant were seriously affected in the albino seedlings at 20 degrees C, whereas some of them recovered into normal levels in green-seedlings at 32 degrees C
TCM1	Os01g0769900	LOC_Os01g56350	chloroplast	RiceTCM1Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.	The data suggest that the rice nuclear-encoded TAC protein TCM1 is essential for proper chloroplast development and maintaining PEP activity under cold stress
TCM1	Os01g0769900	LOC_Os01g56350	development	RiceTCM1Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.	The data suggest that the rice nuclear-encoded TAC protein TCM1 is essential for proper chloroplast development and maintaining PEP activity under cold stress
TCM1	Os01g0769900	LOC_Os01g56350	cold stress	RiceTCM1Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.	The data suggest that the rice nuclear-encoded TAC protein TCM1 is essential for proper chloroplast development and maintaining PEP activity under cold stress
TCM1	Os01g0769900	LOC_Os01g56350	stress	RiceTCM1Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.	The data suggest that the rice nuclear-encoded TAC protein TCM1 is essential for proper chloroplast development and maintaining PEP activity under cold stress
TCM1	Os01g0769900	LOC_Os01g56350	chloroplast development	RiceTCM1Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.	The data suggest that the rice nuclear-encoded TAC protein TCM1 is essential for proper chloroplast development and maintaining PEP activity under cold stress
TCM12	Os12g0536000	LOC_Os12g35040	chloroplast	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
TCM12	Os12g0536000	LOC_Os12g35040	development	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
TCM12	Os12g0536000	LOC_Os12g35040	seedling	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
TCM12	Os12g0536000	LOC_Os12g35040	map-based cloning	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.	The inheritance behaviour and function of TCM12 were then analysed thorough map-based cloning, transgenic complementation and subcellular localisation
TCM12	Os12g0536000	LOC_Os12g35040	photosynthesis	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
TCM12	Os12g0536000	LOC_Os12g35040	photosynthesis	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.	In addition, TCM12 was constitutively expressed, and its disruption resulted in down-regulation of some genes associated with chlorophyll biosynthesis and photosynthesis at low temperatures (20 °C)
TCM12	Os12g0536000	LOC_Os12g35040	nucleus	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.	The thermo-sensitive chlorosis phenotype was caused by a single nucleotide mutation (T→C) on the fifth exon of TCM12 (LOC_Os12g35040) encoding iPGAM, localised to both nucleus and membranes
TCM12	Os12g0536000	LOC_Os12g35040	chloroplast development	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
TCM5	Os05g0417100	LOC_Os05g34460	leaf	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	In this study, we reported the first rice deg mutant tcm5 (thermo-sensitive chlorophyll-deficient mutant 5) that has an albino phenotype, defective chloroplasts and could not survive after the 4-5 leaf seedling stage when grown at high temperature (32 °C)
TCM5	Os05g0417100	LOC_Os05g34460	temperature	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	In this study, we reported the first rice deg mutant tcm5 (thermo-sensitive chlorophyll-deficient mutant 5) that has an albino phenotype, defective chloroplasts and could not survive after the 4-5 leaf seedling stage when grown at high temperature (32 °C)
TCM5	Os05g0417100	LOC_Os05g34460	seedling	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	In this study, we reported the first rice deg mutant tcm5 (thermo-sensitive chlorophyll-deficient mutant 5) that has an albino phenotype, defective chloroplasts and could not survive after the 4-5 leaf seedling stage when grown at high temperature (32 °C)
TCM5	Os05g0417100	LOC_Os05g34460	seedling	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	The TCM5 encodes chloroplast-targeted Deg protease protein which is important for chloroplast development and the maintenance of PSII function and its disruption would lead to a defective chloroplast and affected expression levels of genes associated with chloroplast development and photosynthesis at early rice seedling stage under high temperatures
TCM5	Os05g0417100	LOC_Os05g34460	chloroplast	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.
TCM5	Os05g0417100	LOC_Os05g34460	chloroplast	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	In tcm5 mutants grown at high temperatures, the transcript levels of certain genes associated with chloroplast development especially PSII-associated genes were severely affected, but recovered to normal levels at low temperatures
TCM5	Os05g0417100	LOC_Os05g34460	chloroplast	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	These results showed important role of TCM5 for chloroplast development under high temperatures
TCM5	Os05g0417100	LOC_Os05g34460	chloroplast	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	The TCM5 encodes chloroplast-targeted Deg protease protein which is important for chloroplast development and the maintenance of PSII function and its disruption would lead to a defective chloroplast and affected expression levels of genes associated with chloroplast development and photosynthesis at early rice seedling stage under high temperatures
TCM5	Os05g0417100	LOC_Os05g34460	development	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.
TCM5	Os05g0417100	LOC_Os05g34460	development	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	In tcm5 mutants grown at high temperatures, the transcript levels of certain genes associated with chloroplast development especially PSII-associated genes were severely affected, but recovered to normal levels at low temperatures
TCM5	Os05g0417100	LOC_Os05g34460	development	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	These results showed important role of TCM5 for chloroplast development under high temperatures
TCM5	Os05g0417100	LOC_Os05g34460	development	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	The TCM5 encodes chloroplast-targeted Deg protease protein which is important for chloroplast development and the maintenance of PSII function and its disruption would lead to a defective chloroplast and affected expression levels of genes associated with chloroplast development and photosynthesis at early rice seedling stage under high temperatures
TCM5	Os05g0417100	LOC_Os05g34460	map-based cloning	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	Map-based cloning showed that TCM5 encoding a chloroplast-targeted Deg protease protein
TCM5	Os05g0417100	LOC_Os05g34460	photosynthesis	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	The TCM5 encodes chloroplast-targeted Deg protease protein which is important for chloroplast development and the maintenance of PSII function and its disruption would lead to a defective chloroplast and affected expression levels of genes associated with chloroplast development and photosynthesis at early rice seedling stage under high temperatures
TCM5	Os05g0417100	LOC_Os05g34460	chloroplast development	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.
TCM5	Os05g0417100	LOC_Os05g34460	chloroplast development	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	In tcm5 mutants grown at high temperatures, the transcript levels of certain genes associated with chloroplast development especially PSII-associated genes were severely affected, but recovered to normal levels at low temperatures
TCM5	Os05g0417100	LOC_Os05g34460	chloroplast development	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	These results showed important role of TCM5 for chloroplast development under high temperatures
TCM5	Os05g0417100	LOC_Os05g34460	chloroplast development	The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.	The TCM5 encodes chloroplast-targeted Deg protease protein which is important for chloroplast development and the maintenance of PSII function and its disruption would lead to a defective chloroplast and affected expression levels of genes associated with chloroplast development and photosynthesis at early rice seedling stage under high temperatures
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	root	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Regenerated tdd1 plants showed pleiotropic phenotypes: dwarfing, narrow leaves, short roots and abnormal flowers
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	root	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Trp feeding completely rescued the mutant phenotypes and moderate expression of OsYUCCA1, which encodes a key enzyme in Trp-dependent IAA biosynthesis, also rescued plant height and root length, indicating that the abnormal phenotypes of tdd1 are caused predominantly by Trp and IAA deficiency
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	auxin	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	TDD1-uidA and DR5-uidA expression overlapped at many sites in WT plants but was lacking in tdd1, indicating that TDD1 is involved in auxin biosynthesis
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	flower	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Regenerated tdd1 plants showed pleiotropic phenotypes: dwarfing, narrow leaves, short roots and abnormal flowers
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	flower	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Both Trp and IAA levels in flowers and embryos were much lower in tdd1 than in wild type (WT)
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	flower	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	height	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Trp feeding completely rescued the mutant phenotypes and moderate expression of OsYUCCA1, which encodes a key enzyme in Trp-dependent IAA biosynthesis, also rescued plant height and root length, indicating that the abnormal phenotypes of tdd1 are caused predominantly by Trp and IAA deficiency
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	dwarf	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Here, we report the analysis of a rice tryptophan- (Trp-) and IAA-deficient mutant, tryptophan deficient dwarf1 (tdd1), which is embryonic lethal because of a failure to develop most organs during embryogenesis
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	dwarf	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Regenerated tdd1 plants showed pleiotropic phenotypes: dwarfing, narrow leaves, short roots and abnormal flowers
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	dwarf	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	iaa	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Here, we report the analysis of a rice tryptophan- (Trp-) and IAA-deficient mutant, tryptophan deficient dwarf1 (tdd1), which is embryonic lethal because of a failure to develop most organs during embryogenesis
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	iaa	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	TDD1 encodes a protein homologous to anthranilate synthase beta-subunit, which catalyses the first step of the Trp biosynthesis pathway and functions upstream of Trp-dependent IAA biosynthesis
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	iaa	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Both Trp and IAA levels in flowers and embryos were much lower in tdd1 than in wild type (WT)
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	iaa	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	Trp feeding completely rescued the mutant phenotypes and moderate expression of OsYUCCA1, which encodes a key enzyme in Trp-dependent IAA biosynthesis, also rescued plant height and root length, indicating that the abnormal phenotypes of tdd1 are caused predominantly by Trp and IAA deficiency
TDD1|OASB1	Os04g0463500	LOC_Os04g38950	iaa	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos	In tdd1 embryos, the expression patterns of OSH1 and OsSCR, which mark the presumptive apical region and the L2 layer, respectively, are identical to those in WT, suggesting a possibility either that different IAA levels are required for basic pattern formation than for organ formation or that an orthologous gene compensates for TDD1 deficiency during pattern formation
TDR	Os02g0120500	LOC_Os02g02820	transcription factor	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Furthermore, additional evidence is provided that the expression of OsC6 is positively regulated by a basic helix-loop-helix transcription factor, Tapetum Degeneration Retardation (TDR)
TDR	Os02g0120500	LOC_Os02g02820	anther	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	While the GAMYB expression was not obviously changed in tdr and udt1-1, and no apparent expression fold change of UDT1 in tdr and gamyb-4, suggesting that TDR may act downstream of GAMYB and UDT1, and GAMYB and UDT1 work in parallel to regulate rice early anther development
TDR	Os02g0120500	LOC_Os02g02820	tapetum	High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development	The expression levels of Osc6, OsRAFTIN and TDR, which are tapetum-specific genes, were unaffected by high temperatures
TDR	Os02g0120500	LOC_Os02g02820	cell death	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	These results revealed that the expression of TDR (TAPETUM DEGENERATION RETARDATION), a tapetal cell death regulator, was downregulated in gamyb-4 and udt1 (undeveloped tapetum1)
TDR	Os02g0120500	LOC_Os02g02820	pollen	Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development	Here, we report on the function of the rice tapetum-expressing TDR (Tapetum Degeneration Retardation) gene in aliphatic metabolism and its regulatory role during rice pollen development
TDR	Os02g0120500	LOC_Os02g02820	pollen	Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development	The observations of transmission electron microscopy (TEM) and scanning electron microscopy (SEM) analyses suggested that pollen wall formation was significantly altered in the tdr mutant
TDR	Os02g0120500	LOC_Os02g02820	pollen	Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development	Microarray data revealed that a group of genes putatively involved in lipid transport and metabolism were significantly altered in the tdr mutant, indicating the critical role of TDR in the formation of the pollen wall
TDR	Os02g0120500	LOC_Os02g02820	pollen	Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development	In addition to its function in promoting tapetum PCD, TDR possibly plays crucial regulatory roles in several basic biological processes during rice pollen development
TDR	Os02g0120500	LOC_Os02g02820	anther	Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development	The contents of aliphatic compositions of anther were greatly changed in the tdr mutant revealed by GC-MS (gas chromatography-mass spectrometry) testing, particularly less accumulated in fatty acids, primary alcohols, alkanes and alkenes, and an abnormal increase in secondary alcohols with carbon lengths from C29 to C35 in tdr
TDR	Os02g0120500	LOC_Os02g02820	tapetum	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	These results revealed that the expression of TDR (TAPETUM DEGENERATION RETARDATION), a tapetal cell death regulator, was downregulated in gamyb-4 and udt1 (undeveloped tapetum1)
TDR	Os02g0120500	LOC_Os02g02820	temperature	High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development	The expression levels of Osc6, OsRAFTIN and TDR, which are tapetum-specific genes, were unaffected by high temperatures
TDR	Os02g0120500	LOC_Os02g02820	tapetal	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Extra granule-like structures were observed on the inner surface of the tdr tapetal layer when the expression of OsC6 was driven by the TDR promoter compared with the tdr mutant
TDR	Os02g0120500	LOC_Os02g02820	microspore	The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development	We report the isolation and characterization of a rice (Oryza sativa) male sterile mutant tapetum degeneration retardation (tdr), which exhibits degeneration retardation of the tapetum and middle layer as well as collapse of microspores
TDR	Os02g0120500	LOC_Os02g02820	tapetal	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	These results revealed that the expression of TDR (TAPETUM DEGENERATION RETARDATION), a tapetal cell death regulator, was downregulated in gamyb-4 and udt1 (undeveloped tapetum1)
TDR	Os02g0120500	LOC_Os02g02820	tapetum	Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development	Here, we report on the function of the rice tapetum-expressing TDR (Tapetum Degeneration Retardation) gene in aliphatic metabolism and its regulatory role during rice pollen development
TDR	Os02g0120500	LOC_Os02g02820	tapetum	Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development	In addition to its function in promoting tapetum PCD, TDR possibly plays crucial regulatory roles in several basic biological processes during rice pollen development
TDR	Os02g0120500	LOC_Os02g02820	sterile	The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development	We report the isolation and characterization of a rice (Oryza sativa) male sterile mutant tapetum degeneration retardation (tdr), which exhibits degeneration retardation of the tapetum and middle layer as well as collapse of microspores
TDR	Os02g0120500	LOC_Os02g02820	anther development	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	While the GAMYB expression was not obviously changed in tdr and udt1-1, and no apparent expression fold change of UDT1 in tdr and gamyb-4, suggesting that TDR may act downstream of GAMYB and UDT1, and GAMYB and UDT1 work in parallel to regulate rice early anther development
TDR	Os02g0120500	LOC_Os02g02820	tapetum	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice	Furthermore, additional evidence is provided that the expression of OsC6 is positively regulated by a basic helix-loop-helix transcription factor, Tapetum Degeneration Retardation (TDR)
TDR	Os02g0120500	LOC_Os02g02820	tapetum	The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development	We report the isolation and characterization of a rice (Oryza sativa) male sterile mutant tapetum degeneration retardation (tdr), which exhibits degeneration retardation of the tapetum and middle layer as well as collapse of microspores
TDR	Os02g0120500	LOC_Os02g02820	tapetum	The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development	The TDR gene is preferentially expressed in the tapetum and encodes a putative basic helix-loop-helix protein, which is likely localized to the nucleus
TDR	Os02g0120500	LOC_Os02g02820	tapetum	The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development	These results indicate that TDR is a key component of the molecular network regulating rice tapetum development and degeneration
TDR	Os02g0120500	LOC_Os02g02820	transcription factor	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
TDR	Os02g0120500	LOC_Os02g02820	tapetum	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
TDR	Os02g0120500	LOC_Os02g02820	tapetum degeneration	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
TDR	Os02g0120500	LOC_Os02g02820	ga	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
TDR	Os02g0120500	LOC_Os02g02820	GA	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
TDR	Os02g0120500	LOC_Os02g02820	 ga 	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
TDR	Os02g0120500	LOC_Os02g02820	male fertility	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
TGW2	Os02g0763000	LOC_Os02g52550	grain	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	Natural variation in the promoter of TGW2 determines grain width and weight in rice.
TGW2	Os02g0763000	LOC_Os02g52550	grain	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	 <U+2022> A single nucleotide polymorphism (SNP) variation at 1818<U+00A0>bp upstream of TGW2 is responsible for its different expression, leading to alteration in grain width and weight by influencing cell proliferation and expansion in glumes
TGW2	Os02g0763000	LOC_Os02g52550	grain	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	 TGW2 interacts with KRP1, a regulator of cell cycle in plant, to negatively regulate grain width and weight
TGW2	Os02g0763000	LOC_Os02g52550	cell cycle	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	 TGW2 interacts with KRP1, a regulator of cell cycle in plant, to negatively regulate grain width and weight
TGW2	Os02g0763000	LOC_Os02g52550	breeding	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	 Genetic diversity analysis of TGW2 in 141 rice accessions revealed it as a breeding target in a selective sweep region
TGW2	Os02g0763000	LOC_Os02g52550	cell proliferation	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	 <U+2022> A single nucleotide polymorphism (SNP) variation at 1818<U+00A0>bp upstream of TGW2 is responsible for its different expression, leading to alteration in grain width and weight by influencing cell proliferation and expansion in glumes
TGW2	Os02g0763000	LOC_Os02g52550	grain width	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	Natural variation in the promoter of TGW2 determines grain width and weight in rice.
TGW2	Os02g0763000	LOC_Os02g52550	grain width	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	 <U+2022> A single nucleotide polymorphism (SNP) variation at 1818<U+00A0>bp upstream of TGW2 is responsible for its different expression, leading to alteration in grain width and weight by influencing cell proliferation and expansion in glumes
TGW2	Os02g0763000	LOC_Os02g52550	grain width	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	 TGW2 interacts with KRP1, a regulator of cell cycle in plant, to negatively regulate grain width and weight
TGW2	Os02g0763000	LOC_Os02g52550	grain	Whole Genome Resequencing of 20 Accessions of Rice Landraces Reveals Javanica Genomic Structure Variation and Allelic Genotypes of a Grain Weight Gene TGW2.	 The sequence variation and candidate grain shape-related gene TGW2 were identified through Fst and sweep selective analysis
TGW2	Os02g0763000	LOC_Os02g52550	grain shape	Whole Genome Resequencing of 20 Accessions of Rice Landraces Reveals Javanica Genomic Structure Variation and Allelic Genotypes of a Grain Weight Gene TGW2.	 The sequence variation and candidate grain shape-related gene TGW2 were identified through Fst and sweep selective analysis
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	yield	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	Our findings suggest that TGW6 may be useful for further improvements in yield characteristics in most cultivars
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	yield	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain length	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	Here, we report the cloning and functional analysis of THOUSAND-GRAIN WEIGHT 6 (TGW6), a gene from the Indian landrace rice Kasalath
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	iaa	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	TGW6 encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	iaa	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	In sink organs, the Nipponbare tgw6 allele affects the timing of the transition from the syncytial to the cellular phase by controlling IAA supply and limiting cell number and grain length
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	iaa	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain weight	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	Here, we report the cloning and functional analysis of THOUSAND-GRAIN WEIGHT 6 (TGW6), a gene from the Indian landrace rice Kasalath
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain weight	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	auxin	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	Phylogenetic and expression analyses of grain weight genes TaTGW6 and OsTGW6 and investigation of substrate availability indicate TGW6 does not regulate auxin content of grains but may affect pollen development
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	development	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	Phylogenetic and expression analyses of grain weight genes TaTGW6 and OsTGW6 and investigation of substrate availability indicate TGW6 does not regulate auxin content of grains but may affect pollen development
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	pollen	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	Phylogenetic and expression analyses of grain weight genes TaTGW6 and OsTGW6 and investigation of substrate availability indicate TGW6 does not regulate auxin content of grains but may affect pollen development
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	Phylogenetic and expression analyses of grain weight genes TaTGW6 and OsTGW6 and investigation of substrate availability indicate TGW6 does not regulate auxin content of grains but may affect pollen development
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	This evidence, combined with our observation that developing wheat grains have undetectable levels of ester IAA in comparison to free IAA and do not express an IAA-glucose synthase suggests that TaTGW6 and OsTGW6 do not regulate grain size via the hydrolysis of IAA-glucose
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain size	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	This evidence, combined with our observation that developing wheat grains have undetectable levels of ester IAA in comparison to free IAA and do not express an IAA-glucose synthase suggests that TaTGW6 and OsTGW6 do not regulate grain size via the hydrolysis of IAA-glucose
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	iaa	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	However, a critical comparison of data on TaTGW6 and OsTGW6 with other reports on IAA synthesis in cereal grains requires that this hypothesis be reinvestigated
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	iaa	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	This evidence, combined with our observation that developing wheat grains have undetectable levels of ester IAA in comparison to free IAA and do not express an IAA-glucose synthase suggests that TaTGW6 and OsTGW6 do not regulate grain size via the hydrolysis of IAA-glucose
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain weight	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	Phylogenetic and expression analyses of grain weight genes TaTGW6 and OsTGW6 and investigation of substrate availability indicate TGW6 does not regulate auxin content of grains but may affect pollen development
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	pollen development	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	Phylogenetic and expression analyses of grain weight genes TaTGW6 and OsTGW6 and investigation of substrate availability indicate TGW6 does not regulate auxin content of grains but may affect pollen development
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	IAA	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	However, a critical comparison of data on TaTGW6 and OsTGW6 with other reports on IAA synthesis in cereal grains requires that this hypothesis be reinvestigated
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	IAA	Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains	This evidence, combined with our observation that developing wheat grains have undetectable levels of ester IAA in comparison to free IAA and do not express an IAA-glucose synthase suggests that TaTGW6 and OsTGW6 do not regulate grain size via the hydrolysis of IAA-glucose
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain	Expression, purification and crystallization of TGW6, which limits grain weight in rice.	The 1-bp deletion allele of tgw6 cloned from the Indian landrace rice cultivar Kasalath, which has lost function, enhances both grain size and yield
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	yield	Expression, purification and crystallization of TGW6, which limits grain weight in rice.	The 1-bp deletion allele of tgw6 cloned from the Indian landrace rice cultivar Kasalath, which has lost function, enhances both grain size and yield
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	yield	Expression, purification and crystallization of TGW6, which limits grain weight in rice.	TGW6 has been utilized as a target for breeding and genome editing to increase the yield of rice
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	grain size	Expression, purification and crystallization of TGW6, which limits grain weight in rice.	The 1-bp deletion allele of tgw6 cloned from the Indian landrace rice cultivar Kasalath, which has lost function, enhances both grain size and yield
TGW6|OsTGW6	Os06g0623700	LOC_Os06g41850	breeding	Expression, purification and crystallization of TGW6, which limits grain weight in rice.	TGW6 has been utilized as a target for breeding and genome editing to increase the yield of rice
THIS1	Os01g0751600	LOC_Os01g54810	tillering	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	This study characterized a rice mutant, the most obvious phenotypes of which are high tillering, reduced height, and infertile spikelets (named this1)
THIS1	Os01g0751600	LOC_Os01g54810	tillering	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice
THIS1	Os01g0751600	LOC_Os01g54810	growth	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Similarly to the high tiller number and dwarf mutants in rice, the increased tiller number of this1 plants is ascribed to the release of tiller bud outgrowth rather than to increased tiller bud formation
THIS1	Os01g0751600	LOC_Os01g54810	tiller	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	This study characterized a rice mutant, the most obvious phenotypes of which are high tillering, reduced height, and infertile spikelets (named this1)
THIS1	Os01g0751600	LOC_Os01g54810	tiller	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Similarly to the high tiller number and dwarf mutants in rice, the increased tiller number of this1 plants is ascribed to the release of tiller bud outgrowth rather than to increased tiller bud formation
THIS1	Os01g0751600	LOC_Os01g54810	tiller	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice
THIS1	Os01g0751600	LOC_Os01g54810	seed	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	The seed-setting rate of this1 was less than half that of the wild type, owing to defects in pollen maturation, anther dehiscence, and flower opening
THIS1	Os01g0751600	LOC_Os01g54810	dwarf	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Similarly to the high tiller number and dwarf mutants in rice, the increased tiller number of this1 plants is ascribed to the release of tiller bud outgrowth rather than to increased tiller bud formation
THIS1	Os01g0751600	LOC_Os01g54810	flower	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	The seed-setting rate of this1 was less than half that of the wild type, owing to defects in pollen maturation, anther dehiscence, and flower opening
THIS1	Os01g0751600	LOC_Os01g54810	anther	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	The seed-setting rate of this1 was less than half that of the wild type, owing to defects in pollen maturation, anther dehiscence, and flower opening
THIS1	Os01g0751600	LOC_Os01g54810	branching	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	In the this1 mutant, however, the accelerated rate of branching was delayed until the stem elongation stage, while other mutants lost the ability to control branching at all developmental stages
THIS1	Os01g0751600	LOC_Os01g54810	branching	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Thus, This1 provides joint control between shoot branching and reproductive development
THIS1	Os01g0751600	LOC_Os01g54810	fertility	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Homology searches revealed that THIS1 is conserved in both monocots and eudicots, suggesting that it plays fundamental role in regulating branch and spikelet fertility, as well as other aspects of developmental control
THIS1	Os01g0751600	LOC_Os01g54810	fertility	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice
THIS1	Os01g0751600	LOC_Os01g54810	spikelet	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	This study characterized a rice mutant, the most obvious phenotypes of which are high tillering, reduced height, and infertile spikelets (named this1)
THIS1	Os01g0751600	LOC_Os01g54810	spikelet	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Homology searches revealed that THIS1 is conserved in both monocots and eudicots, suggesting that it plays fundamental role in regulating branch and spikelet fertility, as well as other aspects of developmental control
THIS1	Os01g0751600	LOC_Os01g54810	spikelet	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice
THIS1	Os01g0751600	LOC_Os01g54810	height	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	This study characterized a rice mutant, the most obvious phenotypes of which are high tillering, reduced height, and infertile spikelets (named this1)
THIS1	Os01g0751600	LOC_Os01g54810	height	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice
THIS1	Os01g0751600	LOC_Os01g54810	phytohormone	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	The relative change in expression of marker genes highlighted the possibility that This1 is involved in phytohormone signalling pathways, such as those for strigolactone and auxin
THIS1	Os01g0751600	LOC_Os01g54810	auxin	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	The relative change in expression of marker genes highlighted the possibility that This1 is involved in phytohormone signalling pathways, such as those for strigolactone and auxin
THIS1	Os01g0751600	LOC_Os01g54810	tiller number	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Similarly to the high tiller number and dwarf mutants in rice, the increased tiller number of this1 plants is ascribed to the release of tiller bud outgrowth rather than to increased tiller bud formation
THIS1	Os01g0751600	LOC_Os01g54810	pollen	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	The seed-setting rate of this1 was less than half that of the wild type, owing to defects in pollen maturation, anther dehiscence, and flower opening
THIS1	Os01g0751600	LOC_Os01g54810	stem	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	In the this1 mutant, however, the accelerated rate of branching was delayed until the stem elongation stage, while other mutants lost the ability to control branching at all developmental stages
THIS1	Os01g0751600	LOC_Os01g54810	reproductive	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Thus, This1 provides joint control between shoot branching and reproductive development
THIS1	Os01g0751600	LOC_Os01g54810	strigolactone	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	The relative change in expression of marker genes highlighted the possibility that This1 is involved in phytohormone signalling pathways, such as those for strigolactone and auxin
THIS1	Os01g0751600	LOC_Os01g54810	cell division	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Histological analyses showed that the mutation in this1 resulted in anisotropic cell expansion and cell division
THIS1	Os01g0751600	LOC_Os01g54810	shoot	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice	Thus, This1 provides joint control between shoot branching and reproductive development
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	meristem	A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice	Our analysis of the Tid1-1 mutant revealed that the dynamics of microtubules affects not only anisotropic growth in both dicots and monocots, but also meristematic activity and gross plant morphology
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	growth	A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice	Here, we report a dominant mutant, Twisted dwarf 1-1 (Tid1-1), showing dwarfism and twisted growth in rice
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	growth	A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice	Tid1-1 exhibit right helical growth of the leaves and stem and shortening of the roots
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	growth	A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice	Our analysis of the Tid1-1 mutant revealed that the dynamics of microtubules affects not only anisotropic growth in both dicots and monocots, but also meristematic activity and gross plant morphology
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	root	A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice	Tid1-1 exhibit right helical growth of the leaves and stem and shortening of the roots
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	brassinosteroid	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice	These data indicate that SRS5 independently regulates cell elongation of the brassinosteroid signal transduction pathway
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	stem	A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice	Tid1-1 exhibit right helical growth of the leaves and stem and shortening of the roots
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	stem	A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice	Our analysis of the Tid1-1 mutant revealed that the dynamics of microtubules affects not only anisotropic growth in both dicots and monocots, but also meristematic activity and gross plant morphology
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	seed	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice	In this study, we report a novel semi-dominant mutant Small and round seed 5 (Srs5) that encodes alpha-tubulin protein
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	seed	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice	Seeds of the double mutant of Srs5 and d61-2 were smaller than those of Srs5 or d61-2
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	lemma	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice	Lemma cell length was reduced in Srs5 compared with that of the wild-type
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	cell elongation	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice	These data indicate that SRS5 independently regulates cell elongation of the brassinosteroid signal transduction pathway
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	dwarf	A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice	Here, we report a dominant mutant, Twisted dwarf 1-1 (Tid1-1), showing dwarfism and twisted growth in rice
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	cell division	A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice	Cells in the leaves of Tid1-1 are often ill-shapen, possibly owing to irregular cell division
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	leaf	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	In this study, we showed that overexpression of SRS5 can promote grain length and demonstrated that the overexpression of SRS5 in BR-related mutants rescued the shortened grain length, which is an unfavorable phenotype in the yield potential of BR-related mutants, while preserving the useful semi-dwarf and erect leaf phenotypes
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	grain	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	grain	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	In this study, we showed that overexpression of SRS5 can promote grain length and demonstrated that the overexpression of SRS5 in BR-related mutants rescued the shortened grain length, which is an unfavorable phenotype in the yield potential of BR-related mutants, while preserving the useful semi-dwarf and erect leaf phenotypes
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	grain length	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	In this study, we showed that overexpression of SRS5 can promote grain length and demonstrated that the overexpression of SRS5 in BR-related mutants rescued the shortened grain length, which is an unfavorable phenotype in the yield potential of BR-related mutants, while preserving the useful semi-dwarf and erect leaf phenotypes
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	yield	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	In this study, we showed that overexpression of SRS5 can promote grain length and demonstrated that the overexpression of SRS5 in BR-related mutants rescued the shortened grain length, which is an unfavorable phenotype in the yield potential of BR-related mutants, while preserving the useful semi-dwarf and erect leaf phenotypes
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	grain size	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	dwarf	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	erect	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	In this study, we showed that overexpression of SRS5 can promote grain length and demonstrated that the overexpression of SRS5 in BR-related mutants rescued the shortened grain length, which is an unfavorable phenotype in the yield potential of BR-related mutants, while preserving the useful semi-dwarf and erect leaf phenotypes
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	herbicide resistance	Developing a novel artificial rice germplasm for dinitroaniline herbicide resistance by base editing of OsTubA2.	Developing a novel artificial rice germplasm for dinitroaniline herbicide resistance by base editing of OsTubA2.
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	brassinosteroid	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice ( Oryza sativa L.)	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice ( Oryza sativa L.)
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	grain length	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice ( Oryza sativa L.)	Previously, we cloned SMALL AND ROUND SEED 5 (SRS5) gene (encoding alpha-tubulin) from a small and round seed mutant and revealed that this gene regulates grain length independently of the brassinosteroid (BR) signaling pathway, although BR-related mutants set small grain.
TID1|SRS5|OsTubA2	Os11g0247300	LOC_Os11g14220	cell elongation	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice	Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice
TIF1	Os07g0256200	LOC_Os07g15270	tillering	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.
TIF1	Os07g0256200	LOC_Os07g15270	tiller	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.
TIF1	Os07g0256200	LOC_Os07g15270	tiller	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.	 Natural variation in TN1 affects its interaction with TIF1 (TN1 interaction factor 1) to affect DWARF14 expression and negatively regulate tiller number in rice
TIF1	Os07g0256200	LOC_Os07g15270	tiller number	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.
TIF1	Os07g0256200	LOC_Os07g15270	tiller number	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.	 Natural variation in TN1 affects its interaction with TIF1 (TN1 interaction factor 1) to affect DWARF14 expression and negatively regulate tiller number in rice
TIG1	Os08g0432300	LOC_Os08g33530	transcription factor	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.
TIG1	Os08g0432300	LOC_Os08g33530	growth	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Variations in the tig1 promoter of indica cultivars led to decreased expression of TIG1 in the far-land side of tiller base, reduced cell length and tiller angle, which led to the transition from inclined growth tiller of wild rice to the erect growth tiller during rice domestication
TIG1	Os08g0432300	LOC_Os08g33530	tiller	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	The TIG1 mRNA is primarily enriched in the far-land side of tiller base, promotes cell elongation and enlarges the tiller angle in wild rice
TIG1	Os08g0432300	LOC_Os08g33530	tiller	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Variations in the tig1 promoter of indica cultivars led to decreased expression of TIG1 in the far-land side of tiller base, reduced cell length and tiller angle, which led to the transition from inclined growth tiller of wild rice to the erect growth tiller during rice domestication
TIG1	Os08g0432300	LOC_Os08g33530	tiller	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	The TIG1 protein activates the expression of EXPA3, EXPB5 and SAUR39 to regulate cell elongation and increase the tiller angle
TIG1	Os08g0432300	LOC_Os08g33530	domestication	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.
TIG1	Os08g0432300	LOC_Os08g33530	domestication	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Variations in the tig1 promoter of indica cultivars led to decreased expression of TIG1 in the far-land side of tiller base, reduced cell length and tiller angle, which led to the transition from inclined growth tiller of wild rice to the erect growth tiller during rice domestication
TIG1	Os08g0432300	LOC_Os08g33530	architecture	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.
TIG1	Os08g0432300	LOC_Os08g33530	architecture	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	The cloning of TIG1 supports a new scenario of plant architecture evolution in rice
TIG1	Os08g0432300	LOC_Os08g33530	cell elongation	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	The TIG1 mRNA is primarily enriched in the far-land side of tiller base, promotes cell elongation and enlarges the tiller angle in wild rice
TIG1	Os08g0432300	LOC_Os08g33530	cell elongation	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	The TIG1 protein activates the expression of EXPA3, EXPB5 and SAUR39 to regulate cell elongation and increase the tiller angle
TIG1	Os08g0432300	LOC_Os08g33530	erect	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Variations in the tig1 promoter of indica cultivars led to decreased expression of TIG1 in the far-land side of tiller base, reduced cell length and tiller angle, which led to the transition from inclined growth tiller of wild rice to the erect growth tiller during rice domestication
TIG1	Os08g0432300	LOC_Os08g33530	plant architecture	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.
TIG1	Os08g0432300	LOC_Os08g33530	plant architecture	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	The cloning of TIG1 supports a new scenario of plant architecture evolution in rice
TIG1	Os08g0432300	LOC_Os08g33530	tiller angle	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	The TIG1 mRNA is primarily enriched in the far-land side of tiller base, promotes cell elongation and enlarges the tiller angle in wild rice
TIG1	Os08g0432300	LOC_Os08g33530	tiller angle	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Variations in the tig1 promoter of indica cultivars led to decreased expression of TIG1 in the far-land side of tiller base, reduced cell length and tiller angle, which led to the transition from inclined growth tiller of wild rice to the erect growth tiller during rice domestication
TIG1	Os08g0432300	LOC_Os08g33530	tiller angle	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	The TIG1 protein activates the expression of EXPA3, EXPB5 and SAUR39 to regulate cell elongation and increase the tiller angle
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	transcription factor	The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development	The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	anther development	The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development	The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	tapetal programmed cell death	The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development	The tip2 mutants display undifferentiated inner three anther wall layers and abort tapetal programmed cell death, causing complete male sterility
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	male sterility	The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development	The tip2 mutants display undifferentiated inner three anther wall layers and abort tapetal programmed cell death, causing complete male sterility
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	tapetal programmed cell death	The bHLH142 Transcription Factor Coordinates with TDR1 to Modulate the Expression of EAT1 and Regulate Pollen Development in Rice	Thus, in this study, we identified bHLH142 as having a pivotal role in tapetal programmed cell death and pollen development.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen development	The bHLH142 Transcription Factor Coordinates with TDR1 to Modulate the Expression of EAT1 and Regulate Pollen Development in Rice	Thus, in this study, we identified bHLH142 as having a pivotal role in tapetal programmed cell death and pollen development.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.	Overexpression of bHLH142 in transgenic rice resulted in indehiscent anthers and aborted pollen grains
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	anther	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	development	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen development	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	transcription factor	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Overexpression of bHLH142 induced early expression of several key regulatory transcription factors in pollen development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	We previously showed that knockout of bHLH142 in rice (Oryza sativa) causes pollen sterility by interrupting tapetal programmed cell death (PCD) and bHLH142 coordinates with TDR to modulate the expression of EAT1
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Overexpression of bHLH142 induced early expression of several key regulatory transcription factors in pollen development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Thus, the findings of this study advance our understanding of the central role played by bHLH142 in the regulatory network leading to pollen development in rice and how overexpression of its expression affects pollen development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	sterility	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	We previously showed that knockout of bHLH142 in rice (Oryza sativa) causes pollen sterility by interrupting tapetal programmed cell death (PCD) and bHLH142 coordinates with TDR to modulate the expression of EAT1
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	sterility	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	In this study, we demonstrated that overexpression of bHLH142 (OE142) under the control of the ubiquitin promoter also leads to male sterility in rice by triggering the premature onset of PCD
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	development	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	development	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Overexpression of bHLH142 induced early expression of several key regulatory transcription factors in pollen development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	development	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Thus, the findings of this study advance our understanding of the central role played by bHLH142 in the regulatory network leading to pollen development in rice and how overexpression of its expression affects pollen development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	seed	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Exploitation of this novel functionality of bHLH142 may confer a big advantage to hybrid seed production
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	cell death	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	cell death	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	We previously showed that knockout of bHLH142 in rice (Oryza sativa) causes pollen sterility by interrupting tapetal programmed cell death (PCD) and bHLH142 coordinates with TDR to modulate the expression of EAT1
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	tapetal	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	tapetal	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	We previously showed that knockout of bHLH142 in rice (Oryza sativa) causes pollen sterility by interrupting tapetal programmed cell death (PCD) and bHLH142 coordinates with TDR to modulate the expression of EAT1
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen development	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen development	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Overexpression of bHLH142 induced early expression of several key regulatory transcription factors in pollen development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	pollen development	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Thus, the findings of this study advance our understanding of the central role played by bHLH142 in the regulatory network leading to pollen development in rice and how overexpression of its expression affects pollen development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	PCD	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	In this study, we demonstrated that overexpression of bHLH142 (OE142) under the control of the ubiquitin promoter also leads to male sterility in rice by triggering the premature onset of PCD
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	male sterility	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	In this study, we demonstrated that overexpression of bHLH142 (OE142) under the control of the ubiquitin promoter also leads to male sterility in rice by triggering the premature onset of PCD
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	Ubiquitin	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	In this study, we demonstrated that overexpression of bHLH142 (OE142) under the control of the ubiquitin promoter also leads to male sterility in rice by triggering the premature onset of PCD
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	tapetal programmed cell death	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	tapetal programmed cell death	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice.	We previously showed that knockout of bHLH142 in rice (Oryza sativa) causes pollen sterility by interrupting tapetal programmed cell death (PCD) and bHLH142 coordinates with TDR to modulate the expression of EAT1
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	development	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	UDT1, OsTDF1, TDR, bHLH142 and EAT1 are upstream regulators of rice tapetum development
TIP2|bHLH142	Os01g0293100	LOC_Os01g18870	tapetum	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice	UDT1, OsTDF1, TDR, bHLH142 and EAT1 are upstream regulators of rice tapetum development
TIP3	Os03g0716200	LOC_Os03g50780	transcription factor	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Map-based cloning demonstrated that TIP3 encodes a conserved PHD-finger protein and further study confirmed TIP3 functioned as a transcription factor with transcriptional activation activity
TIP3	Os03g0716200	LOC_Os03g50780	pollen	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	The tip3 mutant displayed smaller and pale yellow anthers without mature pollen grains, abnormal Ubisch body morphology, no pollen wall formation as well as delayed tapetum degeneration
TIP3	Os03g0716200	LOC_Os03g50780	pollen	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Moreover, TIP3 can physically interact with TDR which is a key component of the transcriptional cascade in regulating tapetum development and pollen wall formation
TIP3	Os03g0716200	LOC_Os03g50780	pollen	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Taken together, our results reveal an unprecedented role of TIP3 in regulating Ubisch bodies and pollen exine formation, which presents a potential tool to manipulate male fertility for hybrid rice breeding
TIP3	Os03g0716200	LOC_Os03g50780	anther	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	TIP3 is preferentially expressed in the tapetum and microspores during anther development
TIP3	Os03g0716200	LOC_Os03g50780	development	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	TIP3 is preferentially expressed in the tapetum and microspores during anther development
TIP3	Os03g0716200	LOC_Os03g50780	development	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Moreover, TIP3 can physically interact with TDR which is a key component of the transcriptional cascade in regulating tapetum development and pollen wall formation
TIP3	Os03g0716200	LOC_Os03g50780	development	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Furthermore, disruption of TIP3 changed the expression of several genes involved in tapetum development and degradation, biosynthesis and transport of lipid monomers of sporopollenin in tip3 mutant
TIP3	Os03g0716200	LOC_Os03g50780	map-based cloning	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Map-based cloning demonstrated that TIP3 encodes a conserved PHD-finger protein and further study confirmed TIP3 functioned as a transcription factor with transcriptional activation activity
TIP3	Os03g0716200	LOC_Os03g50780	R protein	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Map-based cloning demonstrated that TIP3 encodes a conserved PHD-finger protein and further study confirmed TIP3 functioned as a transcription factor with transcriptional activation activity
TIP3	Os03g0716200	LOC_Os03g50780	breeding	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Taken together, our results reveal an unprecedented role of TIP3 in regulating Ubisch bodies and pollen exine formation, which presents a potential tool to manipulate male fertility for hybrid rice breeding
TIP3	Os03g0716200	LOC_Os03g50780	fertility	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Taken together, our results reveal an unprecedented role of TIP3 in regulating Ubisch bodies and pollen exine formation, which presents a potential tool to manipulate male fertility for hybrid rice breeding
TIP3	Os03g0716200	LOC_Os03g50780	tapetum	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	The tip3 mutant displayed smaller and pale yellow anthers without mature pollen grains, abnormal Ubisch body morphology, no pollen wall formation as well as delayed tapetum degeneration
TIP3	Os03g0716200	LOC_Os03g50780	tapetum	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	TIP3 is preferentially expressed in the tapetum and microspores during anther development
TIP3	Os03g0716200	LOC_Os03g50780	tapetum	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Moreover, TIP3 can physically interact with TDR which is a key component of the transcriptional cascade in regulating tapetum development and pollen wall formation
TIP3	Os03g0716200	LOC_Os03g50780	tapetum	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Furthermore, disruption of TIP3 changed the expression of several genes involved in tapetum development and degradation, biosynthesis and transport of lipid monomers of sporopollenin in tip3 mutant
TIP3	Os03g0716200	LOC_Os03g50780	anther development	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	TIP3 is preferentially expressed in the tapetum and microspores during anther development
TIP3	Os03g0716200	LOC_Os03g50780	pollen wall	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	The tip3 mutant displayed smaller and pale yellow anthers without mature pollen grains, abnormal Ubisch body morphology, no pollen wall formation as well as delayed tapetum degeneration
TIP3	Os03g0716200	LOC_Os03g50780	pollen wall	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Moreover, TIP3 can physically interact with TDR which is a key component of the transcriptional cascade in regulating tapetum development and pollen wall formation
TIP3	Os03g0716200	LOC_Os03g50780	pollen exine formation	TDR INTERACTING PROTEIN 3 encoding a PHD-finger transcription factor regulates Ubisch bodies and pollen wall formation in rice.	Taken together, our results reveal an unprecedented role of TIP3 in regulating Ubisch bodies and pollen exine formation, which presents a potential tool to manipulate male fertility for hybrid rice breeding
TIPS-11-9	Os11g0673200	LOC_Os11g44950	root	Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.	Abolishment of Tips-11-9 function through T-DNA insertion in a qTIPS-11-positive background resulted in a reduction of lateral root number, which negatively affected biomass accumulation, particularly under phosphorous-limiting conditions
TIPS-11-9	Os11g0673200	LOC_Os11g44950	auxin	Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.	TIPS-11-9 was differentially expressed in emerging lateral roots of contrasting qTIPS-11 haplotypes, which was likely due to differences in cis-regulatory elements and auxin responsiveness
TIPS-11-9	Os11g0673200	LOC_Os11g44950	biomass	Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.	Abolishment of Tips-11-9 function through T-DNA insertion in a qTIPS-11-positive background resulted in a reduction of lateral root number, which negatively affected biomass accumulation, particularly under phosphorous-limiting conditions
TIPS-11-9	Os11g0673200	LOC_Os11g44950	lateral root	Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.	TIPS-11-9 was differentially expressed in emerging lateral roots of contrasting qTIPS-11 haplotypes, which was likely due to differences in cis-regulatory elements and auxin responsiveness
TIPS-11-9	Os11g0673200	LOC_Os11g44950	lateral root	Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.	Abolishment of Tips-11-9 function through T-DNA insertion in a qTIPS-11-positive background resulted in a reduction of lateral root number, which negatively affected biomass accumulation, particularly under phosphorous-limiting conditions
TIPS-11-9	Os11g0673200	LOC_Os11g44950	root number	Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.	Abolishment of Tips-11-9 function through T-DNA insertion in a qTIPS-11-positive background resulted in a reduction of lateral root number, which negatively affected biomass accumulation, particularly under phosphorous-limiting conditions
TIPS-11-9	Os11g0673200	LOC_Os11g44950	lateral root number	Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.	Abolishment of Tips-11-9 function through T-DNA insertion in a qTIPS-11-positive background resulted in a reduction of lateral root number, which negatively affected biomass accumulation, particularly under phosphorous-limiting conditions
TL	Os12g0124900	None	leaf	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	Downregulation of TL by RNA interference (RNAi) and overexpression of OsMYB60 resulted in twisted leaf blades in transgenic rice
TL	Os12g0124900	None	leaf	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	This suggests that TL may play a cis-regulatory role on OsMYB60 in leaf morphological development
TL	Os12g0124900	None	development	A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice.	This suggests that TL may play a cis-regulatory role on OsMYB60 in leaf morphological development
TMS10L	Os03g0703200	LOC_Os03g49620	temperature	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
TMS10L	Os03g0703200	LOC_Os03g49620	pollen	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
TMS10L	Os03g0703200	LOC_Os03g49620	sterility	Two rice receptor-like kinases maintain male fertility under changing temperatures.	tms10 displays male sterility under high temperatures but male fertility under low temperatures, and the tms10 tms10l double mutant shows complete male sterility under both high and low temperatures
TMS10L	Os03g0703200	LOC_Os03g49620	development	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
TMS10L	Os03g0703200	LOC_Os03g49620	fertility	Two rice receptor-like kinases maintain male fertility under changing temperatures.	tms10 displays male sterility under high temperatures but male fertility under low temperatures, and the tms10 tms10l double mutant shows complete male sterility under both high and low temperatures
TMS10L	Os03g0703200	LOC_Os03g49620	tapetal	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
TMS10L	Os03g0703200	LOC_Os03g49620	pollen development	Two rice receptor-like kinases maintain male fertility under changing temperatures.	These findings demonstrate that TMS10 and TMS10L act as a key switch in postmeiotic tapetal development and pollen development by buffering environmental temperature changes, providing insights into the molecular mechanisms by which plants develop phenotypic plasticity via genotype-environment temperature interaction
TMS10L	Os03g0703200	LOC_Os03g49620	male sterility	Two rice receptor-like kinases maintain male fertility under changing temperatures.	tms10 displays male sterility under high temperatures but male fertility under low temperatures, and the tms10 tms10l double mutant shows complete male sterility under both high and low temperatures
TMS5	Os02g0214300	LOC_Os02g12290	development	Development of Commercial Thermo-sensitive Genic Male Sterile Rice Accelerates Hybrid Rice Breeding Using the CRISPR/Cas9-mediated TMS5 Editing System.	Development of Commercial Thermo-sensitive Genic Male Sterile Rice Accelerates Hybrid Rice Breeding Using the CRISPR/Cas9-mediated TMS5 Editing System.
TMS5	Os02g0214300	LOC_Os02g12290	sterile	Development of Commercial Thermo-sensitive Genic Male Sterile Rice Accelerates Hybrid Rice Breeding Using the CRISPR/Cas9-mediated TMS5 Editing System.	Development of Commercial Thermo-sensitive Genic Male Sterile Rice Accelerates Hybrid Rice Breeding Using the CRISPR/Cas9-mediated TMS5 Editing System.
TMS5	Os02g0214300	LOC_Os02g12290	breeding	Development of Commercial Thermo-sensitive Genic Male Sterile Rice Accelerates Hybrid Rice Breeding Using the CRISPR/Cas9-mediated TMS5 Editing System.	Development of Commercial Thermo-sensitive Genic Male Sterile Rice Accelerates Hybrid Rice Breeding Using the CRISPR/Cas9-mediated TMS5 Editing System.
TMS5	Os02g0214300	LOC_Os02g12290	sterility	Generation of a new thermo-sensitive genic male sterile rice line by targeted mutagenesis of TMS5 gene through CRISPR/Cas9 system.	 RESULTS: Here, thermo-sensitive genic male sterility (TGMS) was induced by employing the CRISPR/Cas9 gene editing technology to modify the gene TMS5
TMS5	Os02g0214300	LOC_Os02g12290	sterile	Generation of a new thermo-sensitive genic male sterile rice line by targeted mutagenesis of TMS5 gene through CRISPR/Cas9 system.	Generation of a new thermo-sensitive genic male sterile rice line by targeted mutagenesis of TMS5 gene through CRISPR/Cas9 system.
TMS5	Os02g0214300	LOC_Os02g12290	male sterility	Generation of a new thermo-sensitive genic male sterile rice line by targeted mutagenesis of TMS5 gene through CRISPR/Cas9 system.	 RESULTS: Here, thermo-sensitive genic male sterility (TGMS) was induced by employing the CRISPR/Cas9 gene editing technology to modify the gene TMS5
TMS5	Os02g0214300	LOC_Os02g12290	grain	CRISPR/Cas9-Induced Mutagenesis of TMS5 Confers Thermosensitive Genic Male Sterility by Influencing Protein Expression in Rice (Oryza sativa L.).	 In the present study, a super grain quality line, GXU 47, was used to generate a new TGMS line with specific mutations in a major TGMS gene tms5 generated with CRISPR/Cas9-mediated genome editing in order to improve the rice quality of two-line hybrids
TMS5	Os02g0214300	LOC_Os02g12290	sterility	CRISPR/Cas9-Induced Mutagenesis of TMS5 Confers Thermosensitive Genic Male Sterility by Influencing Protein Expression in Rice (Oryza sativa L.).	CRISPR/Cas9-Induced Mutagenesis of TMS5 Confers Thermosensitive Genic Male Sterility by Influencing Protein Expression in Rice (Oryza sativa L.).
TMS5	Os02g0214300	LOC_Os02g12290	sterility	CRISPR/Cas9-Induced Mutagenesis of TMS5 Confers Thermosensitive Genic Male Sterility by Influencing Protein Expression in Rice (Oryza sativa L.).	 The present study results prove that it is feasible and efficient to generate an excellent mutant line with CRISPR/Cas9, which provides a novel molecular mechanism of male sterility caused by the mutation of tms5
TMS5	Os02g0214300	LOC_Os02g12290	grain quality	CRISPR/Cas9-Induced Mutagenesis of TMS5 Confers Thermosensitive Genic Male Sterility by Influencing Protein Expression in Rice (Oryza sativa L.).	 In the present study, a super grain quality line, GXU 47, was used to generate a new TGMS line with specific mutations in a major TGMS gene tms5 generated with CRISPR/Cas9-mediated genome editing in order to improve the rice quality of two-line hybrids
TMS5	Os02g0214300	LOC_Os02g12290	quality	CRISPR/Cas9-Induced Mutagenesis of TMS5 Confers Thermosensitive Genic Male Sterility by Influencing Protein Expression in Rice (Oryza sativa L.).	 In the present study, a super grain quality line, GXU 47, was used to generate a new TGMS line with specific mutations in a major TGMS gene tms5 generated with CRISPR/Cas9-mediated genome editing in order to improve the rice quality of two-line hybrids
TMS5	Os02g0214300	LOC_Os02g12290	male sterility	CRISPR/Cas9-Induced Mutagenesis of TMS5 Confers Thermosensitive Genic Male Sterility by Influencing Protein Expression in Rice (Oryza sativa L.).	CRISPR/Cas9-Induced Mutagenesis of TMS5 Confers Thermosensitive Genic Male Sterility by Influencing Protein Expression in Rice (Oryza sativa L.).
TMS5	Os02g0214300	LOC_Os02g12290	male sterility	CRISPR/Cas9-Induced Mutagenesis of TMS5 Confers Thermosensitive Genic Male Sterility by Influencing Protein Expression in Rice (Oryza sativa L.).	 The present study results prove that it is feasible and efficient to generate an excellent mutant line with CRISPR/Cas9, which provides a novel molecular mechanism of male sterility caused by the mutation of tms5
TN1	Os01g0610300	LOC_Os01g42460	tillering	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.	 Taken together, these results indicate that TN1 is a tillering regulatory factor whose alleles present apparent preferential utilization across geographical regions
TN1	Os01g0610300	LOC_Os01g42460	tiller	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.	 Natural variation in TN1 affects its interaction with TIF1 (TN1 interaction factor 1) to affect DWARF14 expression and negatively regulate tiller number in rice
TN1	Os01g0610300	LOC_Os01g42460	tiller number	Natural variation in Tiller Number 1 affects its interaction with TIF1 to regulate tillering in rice.	 Natural variation in TN1 affects its interaction with TIF1 (TN1 interaction factor 1) to affect DWARF14 expression and negatively regulate tiller number in rice
TOM1|OsZIFL4	Os11g0134900	LOC_Os11g04020	transporter	Phytosiderophore efflux transporters are crucial for iron acquisition in graminaceous plants	Xenopus laevis oocytes expressing TOM1 or HvTOM1 released (14)C-labeled deoxymugineic acid but not (14)C-labeled nicotianamine, a structural analog and biosynthetic precursor of deoxymugineic acid, indicating that the TOM1 and HvTOM1 proteins are the phytosiderophore efflux transporters
TOM1|OsZIFL4	Os11g0134900	LOC_Os11g04020	transporter	Phytosiderophore efflux transporters are crucial for iron acquisition in graminaceous plants	In rice roots, the efficiency of deoxymugineic acid secretion was enhanced by overexpression of TOM1 and decreased by its repression, providing further evidence that TOM1 encodes the efflux transporter of deoxymugineic acid
TOM1|OsZIFL4	Os11g0134900	LOC_Os11g04020	iron	Phytosiderophore efflux transporters are crucial for iron acquisition in graminaceous plants	Under conditions of iron deficiency, rice and barley roots express high levels of TOM1 and HvTOM1, respectively, and the overexpression of these genes increased tolerance to iron deficiency
TOM1|OsZIFL4	Os11g0134900	LOC_Os11g04020	root	Phytosiderophore efflux transporters are crucial for iron acquisition in graminaceous plants	Under conditions of iron deficiency, rice and barley roots express high levels of TOM1 and HvTOM1, respectively, and the overexpression of these genes increased tolerance to iron deficiency
TOM1|OsZIFL4	Os11g0134900	LOC_Os11g04020	root	Phytosiderophore efflux transporters are crucial for iron acquisition in graminaceous plants	In rice roots, the efficiency of deoxymugineic acid secretion was enhanced by overexpression of TOM1 and decreased by its repression, providing further evidence that TOM1 encodes the efflux transporter of deoxymugineic acid
TOM1|OsZIFL4	Os11g0134900	LOC_Os11g04020	root	ZINC-INDUCED FACILITATOR-LIKE family in plants: lineage-specific expansion in monocotyledons and conserved genomic and expression features among rice (Oryza sativa) paralogs	Transcripts of OsZIFL4, OsZIFL5, OsZIFL7, and OsZIFL12 accumulate in response to Zn-excess and Fe-deficiency in roots, two stresses with partially overlapping responses
TOM2	Os11g0135000	LOC_Os11g04030	root	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.	In onion epidermal and rice root cells, the TOM2-GFP fusion protein localized to the cell membrane, indicating that the TOM2 protein is a transporter for phytosiderophore efflux to the cell exterior
TOM2	Os11g0135000	LOC_Os11g04030	growth	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.	Transgenic rice in which TOM2 expression was repressed by RNA interference showed growth defects compared to non-transformants and TOM3-repressed rice
TOM2	Os11g0135000	LOC_Os11g04030	growth	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.	Our results indicate that TOM2 is involved in the internal transport of DMA, which is required for normal plant growth
TOM2	Os11g0135000	LOC_Os11g04030	seed	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.	Strong TOM2 expression was observed in developing tissues during seed maturation and germination, while TOM3 expression was weak during seed maturation
TOM2	Os11g0135000	LOC_Os11g04030	transporter	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.
TOM2	Os11g0135000	LOC_Os11g04030	transporter	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.	In the present study, we analyzed TOM2 and TOM3, rice homologs of transporter of mugineic acid family phytosiderophores 1 (TOM1), a crucial efflux transporter directly involved in phytosiderophore secretion into the soil
TOM2	Os11g0135000	LOC_Os11g04030	transporter	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.	In onion epidermal and rice root cells, the TOM2-GFP fusion protein localized to the cell membrane, indicating that the TOM2 protein is a transporter for phytosiderophore efflux to the cell exterior
TOM2	Os11g0135000	LOC_Os11g04030	plant growth	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.	Our results indicate that TOM2 is involved in the internal transport of DMA, which is required for normal plant growth
TOM3	Os11g0135900	LOC_Os11g04104	seed	The phytosiderophore efflux transporter TOM2 is involved in metal transport in rice.	Strong TOM2 expression was observed in developing tissues during seed maturation and germination, while TOM3 expression was weak during seed maturation
TOND1	Os12g0630100	LOC_Os12g43440	grain	TOND1 confers tolerance to nitrogen deficiency in rice.	The identification of TOND1 provides a molecular basis for breeding rice varieties with improved grain yield despite decreased input of N fertilizers
TOND1	Os12g0630100	LOC_Os12g43440	nitrogen	TOND1 confers tolerance to nitrogen deficiency in rice.	TOND1 confers tolerance to nitrogen deficiency in rice.
TOND1	Os12g0630100	LOC_Os12g43440	grain yield	TOND1 confers tolerance to nitrogen deficiency in rice.	The identification of TOND1 provides a molecular basis for breeding rice varieties with improved grain yield despite decreased input of N fertilizers
TOND1	Os12g0630100	LOC_Os12g43440	yield	TOND1 confers tolerance to nitrogen deficiency in rice.	The identification of TOND1 provides a molecular basis for breeding rice varieties with improved grain yield despite decreased input of N fertilizers
TOND1	Os12g0630100	LOC_Os12g43440	tolerance	TOND1 confers tolerance to nitrogen deficiency in rice.	TOND1 confers tolerance to nitrogen deficiency in rice.
TOND1	Os12g0630100	LOC_Os12g43440	tolerance	TOND1 confers tolerance to nitrogen deficiency in rice.	Over-expression of TOND1 increased the tolerance to N deficiency in the TOND1-deficient rice cultivars
TOND1	Os12g0630100	LOC_Os12g43440	breeding	TOND1 confers tolerance to nitrogen deficiency in rice.	The identification of TOND1 provides a molecular basis for breeding rice varieties with improved grain yield despite decreased input of N fertilizers
TOP6A2|OsTOP6A2|OsSPO11-2	Os08g0156900	LOC_Os08g06050	cytokinin	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	The expression of OsTOP6A2, OsTOP6A3 and OsTOP6B was differentially regulated by the plant hormones, auxin, cytokinin, and abscisic acid
TOP6A2|OsTOP6A2|OsSPO11-2	Os08g0156900	LOC_Os08g06050	auxin	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	The expression of OsTOP6A2, OsTOP6A3 and OsTOP6B was differentially regulated by the plant hormones, auxin, cytokinin, and abscisic acid
TOP6A2|OsTOP6A2|OsSPO11-2	Os08g0156900	LOC_Os08g06050	flower	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	The transcript abundance of OsTOP6A2, OsTOP6A3 and OsTOP6B was also higher in prepollinated flowers and callus
TOP6A2|OsTOP6A2|OsSPO11-2	Os08g0156900	LOC_Os08g06050	pollen	Assessment of the roles of OsSPO11-2 and OsSPO11-4 in rice meiosis using CRISPR/Cas9 mutagenesis	Similar to Osspo11-1, the pollen mother cells of Osspo11-2 T1 progeny plants, showed an absence of bivalent formation at metaphase I, aberrant segregation of homologous chromosomes and formation of nonviable tetrads
TOP6A2|OsTOP6A2|OsSPO11-2	Os08g0156900	LOC_Os08g06050	panicle	Assessment of the roles of OsSPO11-2 and OsSPO11-4 in rice meiosis using CRISPR/Cas9 mutagenesis	Similar to Osspo11-1, biallelic mutations in OsSPO11-2 first exon led to complete panicle sterility, and consequently, none of these primary transformants produced seeds
TOP6A2|OsTOP6A2|OsSPO11-2	Os08g0156900	LOC_Os08g06050	meiosis	Assessment of the roles of OsSPO11-2 and OsSPO11-4 in rice meiosis using CRISPR/Cas9 mutagenesis	Assessment of the roles of OsSPO11-2 and OsSPO11-4 in rice meiosis using CRISPR/Cas9 mutagenesis
TOP6A2|OsTOP6A2|OsSPO11-2	Os08g0156900	LOC_Os08g06050	meiosis	Assessment of the roles of OsSPO11-2 and OsSPO11-4 in rice meiosis using CRISPR/Cas9 mutagenesis	Altogether, this study demonstrates that whereas OsSPO11-1 and OsSPO11-2 are the likely orthologs of Arabidopsis AtSPO11-1 and AtSPO11-2, the additional OsSPO11-4 gene has no major role in wild-type rice meiosis
TOP6A2|OsTOP6A2|OsSPO11-2	Os08g0156900	LOC_Os08g06050	sterile	Assessment of the roles of OsSPO11-2 and OsSPO11-4 in rice meiosis using CRISPR/Cas9 mutagenesis	As expected, we observed very few DMC1 foci (19 on average) in the sterile Osspso11-1 mutant but surprisingly 85 foci in the sterile Osspo11-2 mutant, indicative of a divergent function between these two SPO11 genes in rice
TPI|OsTPI1.1	Os01g0147900	LOC_Os01g05490	culm	Cytosolic triosephosphate isomerase is a single gene in rice	A single TPI mRNA species of about 1100 nucleotides was detected by gel blot hybridization analysis of RNA isolated from root, culm, and leaf tissues, indicating that its expression is ubiquitous
TPI|OsTPI1.1	Os01g0147900	LOC_Os01g05490	root	Cytosolic triosephosphate isomerase is a single gene in rice	A single TPI mRNA species of about 1100 nucleotides was detected by gel blot hybridization analysis of RNA isolated from root, culm, and leaf tissues, indicating that its expression is ubiquitous
TPI|OsTPI1.1	Os01g0147900	LOC_Os01g05490	chloroplast	Cytosolic triosephosphate isomerase is a single gene in rice	Based on sequence comparison and molecular analysis, we propose that the chloroplast-located TPI may be encoded by divergent structural nuclear genes in rice
TPI|OsTPI1.1	Os01g0147900	LOC_Os01g05490	leaf	Cytosolic triosephosphate isomerase is a single gene in rice	A single TPI mRNA species of about 1100 nucleotides was detected by gel blot hybridization analysis of RNA isolated from root, culm, and leaf tissues, indicating that its expression is ubiquitous
TPS46|OsTPS31	Os08g0168000	LOC_Os08g07100	resistance	TPS46, a Rice Terpene Synthase Conferring Natural Resistance to Bird Cherry-Oat Aphid, Rhopalosiphum padi (Linnaeus).	Consequently, tps46 could be a potential target gene to be employed for improving the resistance of plants to aphids
TPS46|OsTPS31	Os08g0168000	LOC_Os08g07100	defense	TPS46, a Rice Terpene Synthase Conferring Natural Resistance to Bird Cherry-Oat Aphid, Rhopalosiphum padi (Linnaeus).	Our data suggested that the constitutive emissions of Eβf and limonene regulated by the constitutive expression of tps46 may play a crucial role in rice defense against R
TPS46|OsTPS31	Os08g0168000	LOC_Os08g07100	resistance	Cloning of the promoter of rice brown planthopper feeding-inducible gene OsTPS31 and identification of related cis-regulatory elements.	 CONCLUSION: The findings provide a new promoter and a new cis-regulatory sequence tool for the research on and application of rice BPH resistance genes, as well as a new perspective for functional analysis of the OsTPS31 gene
TPS46|OsTPS31	Os08g0168000	LOC_Os08g07100	brown planthopper	Cloning of the promoter of rice brown planthopper feeding-inducible gene OsTPS31 and identification of related cis-regulatory elements.	Cloning of the promoter of rice brown planthopper feeding-inducible gene OsTPS31 and identification of related cis-regulatory elements.
TRAB1|OsbZIP66	Os08g0471950|Os08g0472000	LOC_Os08g36790	dormancy	A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription	Results indicate that TRAB1 is a true trans-acting factor involved in ABA-regulated transcription and reveal a molecular mechanism for the VP1-dependent, ABA-inducible transcription that controls maturation and dormancy in plant embryos
TRAB1|OsbZIP66	Os08g0471950|Os08g0472000	LOC_Os08g36790	ABA	Abscisic Acid-Induced Transcription Is Mediated by Phosphorylation of an Abscisic Acid Response Element Binding Factor, TRAB1	The rice basic domain/Leu zipper factor TRAB1 binds to abscisic acid (ABA) response elements and mediates ABA signals to activate transcription
TRAB1|OsbZIP66	Os08g0471950|Os08g0472000	LOC_Os08g36790	ABA	Abscisic Acid-Induced Transcription Is Mediated by Phosphorylation of an Abscisic Acid Response Element Binding Factor, TRAB1	We had shown previously that a chimeric promoter containing GAL4 binding sites became ABA inducible when a GAL4 binding domain-TRAB1 fusion protein was present
TRAB1|OsbZIP66	Os08g0471950|Os08g0472000	LOC_Os08g36790	ABA	Abscisic Acid-Induced Transcription Is Mediated by Phosphorylation of an Abscisic Acid Response Element Binding Factor, TRAB1	This expression system allowed us to assay the ABA response function of TRAB1
TRAB1|OsbZIP66	Os08g0471950|Os08g0472000	LOC_Os08g36790	ABA	Abscisic Acid-Induced Transcription Is Mediated by Phosphorylation of an Abscisic Acid Response Element Binding Factor, TRAB1	Our results suggest that the terminal or nearly terminal event of the primary ABA signal transduction pathway is the phosphorylation in the nucleus of preexisting TRAB1
TRAB1|OsbZIP66	Os08g0471950|Os08g0472000	LOC_Os08g36790	transcription factor	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice	In vivo and in vitro assays showed that three bZIP transcription factors, OsbZIP23, OsbZIP66 and OsbZIP72, interacted with OsMFT2
TSCD11	Os11g0610900	LOC_Os11g39670	chloroplast	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice
TSCD11	Os11g0610900	LOC_Os11g39670	chloroplast	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	The TSCD11 gene encodes a seryl-tRNA synthetase localized to chloroplast
TSCD11	Os11g0610900	LOC_Os11g39670	chloroplast	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Compared with the wild type (WT), mutation in TSCD11 led to significant alteration in expression levels of genes associated with chlorophyll biosynthesis, photosynthesis and chloroplast development under high temperature
TSCD11	Os11g0610900	LOC_Os11g39670	temperature	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice
TSCD11	Os11g0610900	LOC_Os11g39670	temperature	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	The tscd11 mutant developed albino leaves at the 3-leaf stage under high temperature (35 C), but had normal green leaves under low temperature (25 C)
TSCD11	Os11g0610900	LOC_Os11g39670	temperature	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Compared with the wild type (WT), mutation in TSCD11 led to significant alteration in expression levels of genes associated with chlorophyll biosynthesis, photosynthesis and chloroplast development under high temperature
TSCD11	Os11g0610900	LOC_Os11g39670	development	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice
TSCD11	Os11g0610900	LOC_Os11g39670	development	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Compared with the wild type (WT), mutation in TSCD11 led to significant alteration in expression levels of genes associated with chlorophyll biosynthesis, photosynthesis and chloroplast development under high temperature
TSCD11	Os11g0610900	LOC_Os11g39670	photosynthesis	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Compared with the wild type (WT), mutation in TSCD11 led to significant alteration in expression levels of genes associated with chlorophyll biosynthesis, photosynthesis and chloroplast development under high temperature
TSCD11	Os11g0610900	LOC_Os11g39670	chloroplast development	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice
TSCD11	Os11g0610900	LOC_Os11g39670	chloroplast development	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Compared with the wild type (WT), mutation in TSCD11 led to significant alteration in expression levels of genes associated with chlorophyll biosynthesis, photosynthesis and chloroplast development under high temperature
TSCD11	Os11g0610900	LOC_Os11g39670	chlorophyll content	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice	Consistent with the albino phenotype, impaired chloroplasts, decreased chlorophyll content and increased ROS accumulation were found in the tscd11 mutant at 35 C
TSV3	Os03g0799700	LOC_Os03g58540	leaf	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
TSV3	Os03g0799700	LOC_Os03g58540	leaf	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	These observations suggest that the rice nuclear-encoded TSV3 plays important roles in chloroplast development at early leaf stage under cold stress
TSV3	Os03g0799700	LOC_Os03g58540	chloroplast	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
TSV3	Os03g0799700	LOC_Os03g58540	chloroplast	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Expression of TSV3 was high in leaves and weak or undetectable in other tissues, suggesting a tissue-specific expression of TSV3 In the tsv3 mutant, expression levels of genes associated with the biogenesis of the chloroplast ribosome 50S subunit were severely decreased at the 3-leaf-stage under cold stress (20 C), but could be recovered to normal levels at a higher temperature (32 C)
TSV3	Os03g0799700	LOC_Os03g58540	chloroplast	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	These observations suggest that the rice nuclear-encoded TSV3 plays important roles in chloroplast development at early leaf stage under cold stress
TSV3	Os03g0799700	LOC_Os03g58540	temperature	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Expression of TSV3 was high in leaves and weak or undetectable in other tissues, suggesting a tissue-specific expression of TSV3 In the tsv3 mutant, expression levels of genes associated with the biogenesis of the chloroplast ribosome 50S subunit were severely decreased at the 3-leaf-stage under cold stress (20 C), but could be recovered to normal levels at a higher temperature (32 C)
TSV3	Os03g0799700	LOC_Os03g58540	development	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
TSV3	Os03g0799700	LOC_Os03g58540	development	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	These observations suggest that the rice nuclear-encoded TSV3 plays important roles in chloroplast development at early leaf stage under cold stress
TSV3	Os03g0799700	LOC_Os03g58540	map-based cloning	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Map-based cloning and complementation experiments showed that TSV3 encoded a small GTP-binding protein
TSV3	Os03g0799700	LOC_Os03g58540	cold stress	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
TSV3	Os03g0799700	LOC_Os03g58540	cold stress	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Expression of TSV3 was high in leaves and weak or undetectable in other tissues, suggesting a tissue-specific expression of TSV3 In the tsv3 mutant, expression levels of genes associated with the biogenesis of the chloroplast ribosome 50S subunit were severely decreased at the 3-leaf-stage under cold stress (20 C), but could be recovered to normal levels at a higher temperature (32 C)
TSV3	Os03g0799700	LOC_Os03g58540	cold stress	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	These observations suggest that the rice nuclear-encoded TSV3 plays important roles in chloroplast development at early leaf stage under cold stress
TSV3	Os03g0799700	LOC_Os03g58540	stress	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Expression of TSV3 was high in leaves and weak or undetectable in other tissues, suggesting a tissue-specific expression of TSV3 In the tsv3 mutant, expression levels of genes associated with the biogenesis of the chloroplast ribosome 50S subunit were severely decreased at the 3-leaf-stage under cold stress (20 C), but could be recovered to normal levels at a higher temperature (32 C)
TSV3	Os03g0799700	LOC_Os03g58540	stress	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	These observations suggest that the rice nuclear-encoded TSV3 plays important roles in chloroplast development at early leaf stage under cold stress
TSV3	Os03g0799700	LOC_Os03g58540	chloroplast development	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
TSV3	Os03g0799700	LOC_Os03g58540	chloroplast development	Rice TSV3 Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	These observations suggest that the rice nuclear-encoded TSV3 plays important roles in chloroplast development at early leaf stage under cold stress
TT3.2	Os03g0707200|Os03g0707250	LOC_Os03g49940	thermotolerance	A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance	A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance
TT3.2	Os03g0707200|Os03g0707250	LOC_Os03g49940	chloroplast	A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance	A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	growth	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	brassinosteroid	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	dwarf	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	In this study, we report a D1 genetic interactor Taihu Dwarf1 (TUD1) that encodes a functional U-box E3 ubiquitin ligase
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	dwarf	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	Histological observations showed that the dwarf phenotype of tud1 is mainly due to decreased cell proliferation and disorganized cell files in aerial organs
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	 BR 	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice	Genetic, phenotypic, and physiological analyses have shown that tud1 is epistatic to d1 and is less sensitive to BR treatment
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	cell division	Dwarf and short grain 1, encoding a putative U-box protein regulates cell division and elongation in rice.	In the dsg1 mutant (an allelic mutant of tud1), the lengths of the roots, internodes, panicles, and seeds were shorter than that in the wild-type, which was due to defects in cell division and elongation
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	cell division	Dwarf and short grain 1, encoding a putative U-box protein regulates cell division and elongation in rice.	These results demonstrate that DSG1 positively regulates cell division and elongation and may be involved in multiple hormone pathways
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	salicylic acid	Dwarf and short grain 1, encoding a putative U-box protein regulates cell division and elongation in rice.	The dsg1 mutant is less sensitive to brassinosteroid treatment than the wild-type, and DSG1 expression is negatively regulated by brassinosteroids, ethylene, auxin, and salicylic acid
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	brassinosteroid	Dwarf and short grain 1, encoding a putative U-box protein regulates cell division and elongation in rice.	The dsg1 mutant is less sensitive to brassinosteroid treatment than the wild-type, and DSG1 expression is negatively regulated by brassinosteroids, ethylene, auxin, and salicylic acid
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Brassinosteroid	Dwarf and short grain 1, encoding a putative U-box protein regulates cell division and elongation in rice.	The dsg1 mutant is less sensitive to brassinosteroid treatment than the wild-type, and DSG1 expression is negatively regulated by brassinosteroids, ethylene, auxin, and salicylic acid
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	seedlings	Rice ERECT LEAF 1 acts in an alternative brassinosteroid signaling pathway independent of the receptor kinase OsBRI1.	 These results indicate that less than half of ELF1-regulated genes in rice seedlings are affected by OsBRI1, and suggest that ELF1 acts in a rice brassinosteroid signaling pathway different from that initiated by OsBRI1
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	jasmonic	Rice ERECT LEAF 1 acts in an alternative brassinosteroid signaling pathway independent of the receptor kinase OsBRI1.	 These results imply that ELF1 suppresses stress-induced signalling, and that jasmonic acid signaling is stimulated in elf1-1; therefore, ELF1 may be involved in the brassinosteroid-mediated suppression of jasmonic acid response in rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	jasmonic acid	Rice ERECT LEAF 1 acts in an alternative brassinosteroid signaling pathway independent of the receptor kinase OsBRI1.	 These results imply that ELF1 suppresses stress-induced signalling, and that jasmonic acid signaling is stimulated in elf1-1; therefore, ELF1 may be involved in the brassinosteroid-mediated suppression of jasmonic acid response in rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	brassinosteroid	Rice ERECT LEAF 1 acts in an alternative brassinosteroid signaling pathway independent of the receptor kinase OsBRI1.	 These results indicate that less than half of ELF1-regulated genes in rice seedlings are affected by OsBRI1, and suggest that ELF1 acts in a rice brassinosteroid signaling pathway different from that initiated by OsBRI1
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Brassinosteroid	Rice ERECT LEAF 1 acts in an alternative brassinosteroid signaling pathway independent of the receptor kinase OsBRI1.	 These results indicate that less than half of ELF1-regulated genes in rice seedlings are affected by OsBRI1, and suggest that ELF1 acts in a rice brassinosteroid signaling pathway different from that initiated by OsBRI1
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Brassinosteroid Signaling	Rice ERECT LEAF 1 acts in an alternative brassinosteroid signaling pathway independent of the receptor kinase OsBRI1.	 These results indicate that less than half of ELF1-regulated genes in rice seedlings are affected by OsBRI1, and suggest that ELF1 acts in a rice brassinosteroid signaling pathway different from that initiated by OsBRI1
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	brassinosteroid	An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.	 Physiological analyses suggested that elf1-1 is brassinosteroid-insensitive, so we hypothesized that ELF1 encodes a positive regulator of brassinosteroid signaling
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	brassinosteroid	An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.	 Similarities in the phenotypes of elf1 and d61 mutants (mutants of brassinosteroid receptor gene OsBRI1), and in the regulation of ELF1 and OsBRI1 expression, imply that ELF1 functions as a positive regulator of brassinosteroid signaling in rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Brassinosteroid	An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.	 Physiological analyses suggested that elf1-1 is brassinosteroid-insensitive, so we hypothesized that ELF1 encodes a positive regulator of brassinosteroid signaling
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Brassinosteroid	An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.	 Similarities in the phenotypes of elf1 and d61 mutants (mutants of brassinosteroid receptor gene OsBRI1), and in the regulation of ELF1 and OsBRI1 expression, imply that ELF1 functions as a positive regulator of brassinosteroid signaling in rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Brassinosteroid Signaling	An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.	 Physiological analyses suggested that elf1-1 is brassinosteroid-insensitive, so we hypothesized that ELF1 encodes a positive regulator of brassinosteroid signaling
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Brassinosteroid Signaling	An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.	 Similarities in the phenotypes of elf1 and d61 mutants (mutants of brassinosteroid receptor gene OsBRI1), and in the regulation of ELF1 and OsBRI1 expression, imply that ELF1 functions as a positive regulator of brassinosteroid signaling in rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Ubiquitin	An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.	 U-box proteins have been shown to function as E3 ubiquitin ligases; in fact, ELF1 possessed E3 ubiquitin ligase activity in vitro
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	transcription factor	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 Here, by conducting yeast two-hybrid assay and in vitro ubiquitination experiments, we demonstrate that ELF1 interacts with the OsWRKY4 transcription factor, a positive regulator of defense responses to rice sheath blight
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	growth	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 These results suggest that ELF1 indirectly controls the expression of PR1b and PR5 genes by regulating the OsWRKY4 protein level, and support a hypothesis that brassinosteroid and jasmonic acid cooperate to maintain the balance between growth and defense responses
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	sheath	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 Here, by conducting yeast two-hybrid assay and in vitro ubiquitination experiments, we demonstrate that ELF1 interacts with the OsWRKY4 transcription factor, a positive regulator of defense responses to rice sheath blight
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	defense	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 Here, by conducting yeast two-hybrid assay and in vitro ubiquitination experiments, we demonstrate that ELF1 interacts with the OsWRKY4 transcription factor, a positive regulator of defense responses to rice sheath blight
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	defense	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 These results suggest that ELF1 indirectly controls the expression of PR1b and PR5 genes by regulating the OsWRKY4 protein level, and support a hypothesis that brassinosteroid and jasmonic acid cooperate to maintain the balance between growth and defense responses
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	defense response	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 Here, by conducting yeast two-hybrid assay and in vitro ubiquitination experiments, we demonstrate that ELF1 interacts with the OsWRKY4 transcription factor, a positive regulator of defense responses to rice sheath blight
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	defense response	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 These results suggest that ELF1 indirectly controls the expression of PR1b and PR5 genes by regulating the OsWRKY4 protein level, and support a hypothesis that brassinosteroid and jasmonic acid cooperate to maintain the balance between growth and defense responses
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	jasmonic	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 ELF1 decreased the stability of OsWRKY4, whereas exogenous jasmonic acid treatment suppressed this effect of ELF1, resulting in OsWRKY4 accumulation in rice plants
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	jasmonic	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 These results suggest that ELF1 indirectly controls the expression of PR1b and PR5 genes by regulating the OsWRKY4 protein level, and support a hypothesis that brassinosteroid and jasmonic acid cooperate to maintain the balance between growth and defense responses
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	jasmonic	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 We conclude that ELF1 participates in the antagonistic interaction between these two phytohormones by suppressing the jasmonic acid response through the down-regulation of OsWRKY4 protein level in rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	jasmonic acid	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 ELF1 decreased the stability of OsWRKY4, whereas exogenous jasmonic acid treatment suppressed this effect of ELF1, resulting in OsWRKY4 accumulation in rice plants
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	jasmonic acid	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 These results suggest that ELF1 indirectly controls the expression of PR1b and PR5 genes by regulating the OsWRKY4 protein level, and support a hypothesis that brassinosteroid and jasmonic acid cooperate to maintain the balance between growth and defense responses
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	jasmonic acid	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 We conclude that ELF1 participates in the antagonistic interaction between these two phytohormones by suppressing the jasmonic acid response through the down-regulation of OsWRKY4 protein level in rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	brassinosteroid	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 These results suggest that ELF1 indirectly controls the expression of PR1b and PR5 genes by regulating the OsWRKY4 protein level, and support a hypothesis that brassinosteroid and jasmonic acid cooperate to maintain the balance between growth and defense responses
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Brassinosteroid	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 These results suggest that ELF1 indirectly controls the expression of PR1b and PR5 genes by regulating the OsWRKY4 protein level, and support a hypothesis that brassinosteroid and jasmonic acid cooperate to maintain the balance between growth and defense responses
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	blight	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	 Here, by conducting yeast two-hybrid assay and in vitro ubiquitination experiments, we demonstrate that ELF1 interacts with the OsWRKY4 transcription factor, a positive regulator of defense responses to rice sheath blight
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	BR	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In addition, inhibition of BR synthesis promotes GSK2 accumulation and suppresses TUD1 stability
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	BR	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 Furthermore, the GSK2 degradation process is largely impaired in tud1 in response to BR
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	BR	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In conclusion, our study demonstrates the role of TUD1 in BR-induced GSK2 degradation, thereby advancing our understanding of a critical step in the BR signaling pathway of rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	BR signaling	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In conclusion, our study demonstrates the role of TUD1 in BR-induced GSK2 degradation, thereby advancing our understanding of a critical step in the BR signaling pathway of rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	 BR 	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In addition, inhibition of BR synthesis promotes GSK2 accumulation and suppresses TUD1 stability
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	 BR 	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 In conclusion, our study demonstrates the role of TUD1 in BR-induced GSK2 degradation, thereby advancing our understanding of a critical step in the BR signaling pathway of rice
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Ubiquitin	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.
TUD1|DSG1|ELF1	Os03g0232600	LOC_Os03g13010	Ubiquitin	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	 Here, we identify the U-box ubiquitin ligase TUD1 as a GSK2-interacting protein by yeast two-hybrid screening
TWINKLE	Os06g0671700	LOC_Os06g45980	helicase	Defective mitochondrial function by mutation in THICK ALEURONE 1 encoding a mitochondrion-targeted single-stranded DNA-binding protein leads to increased aleurone cell layers and improved nutrition in rice.	 We found that TA1/OsmtSSB1 interacts with mitochondrial DNA recombinase RECA3 and DNA helicase TWINKLE, and downregulation of RECA3 or TWINKLE also leads to ta1-like phenotypes
TYDC	Os01g0770200	LOC_Os01g56380	growth	Characterization of rice tryptophan decarboxylases and their direct involvement in serotonin biosynthesis in transgenic rice	The overproduction of TYDC resulted in stunted growth and a lack of seed production due to tyramine accumulation, which increased as the plant aged
TYDC	Os01g0770200	LOC_Os01g56380	seed	Characterization of rice tryptophan decarboxylases and their direct involvement in serotonin biosynthesis in transgenic rice	The overproduction of TYDC resulted in stunted growth and a lack of seed production due to tyramine accumulation, which increased as the plant aged
UbL404	Os09g0483400	LOC_Os09g31031	male sterility	RNase Z(S1) processes UbL40 mRNAs and controls thermosensitive genic male sterility in rice	Among the UbL40 family members, UbL404 may have a major role in the regulation of thermosensitive genic male sterility since the expression level of UbL404 was much higher than that of UbL401 and UbL402, consistent with the RNA-seq data in NIL5 and NIL8, and RT CPCR data in AnS-1 (Figs 4a,b and 5d; Supplementary Figs 10, 12, 13 and 15)
UCIP2	Os01g0667700	LOC_Os01g47740	resistance	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae	The CRISPR/Cas9 mutants of UCIP2 also showed compromised resistance to M
Udt1	Os07g0549600	LOC_Os07g36460	anther	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Transcripts of UDT1, which functions in tapetum development during early meiosis, were reduced in dtm1 anthers, as were those of PAIR1, which is involved in chromosome pairing and synapsis during meiosis
Udt1	Os07g0549600	LOC_Os07g36460	anther	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Moreover, transcripts of DTM1 were reduced in msp1 mutant anthers, but not in udt1 and pair1 mutants
Udt1	Os07g0549600	LOC_Os07g36460	cell death	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	These results revealed that the expression of TDR (TAPETUM DEGENERATION RETARDATION), a tapetal cell death regulator, was downregulated in gamyb-4 and udt1 (undeveloped tapetum1)
Udt1	Os07g0549600	LOC_Os07g36460	anther development	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	While the GAMYB expression was not obviously changed in tdr and udt1-1, and no apparent expression fold change of UDT1 in tdr and gamyb-4, suggesting that TDR may act downstream of GAMYB and UDT1, and GAMYB and UDT1 work in parallel to regulate rice early anther development
Udt1	Os07g0549600	LOC_Os07g36460	meiosis	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Transcripts of UDT1, which functions in tapetum development during early meiosis, were reduced in dtm1 anthers, as were those of PAIR1, which is involved in chromosome pairing and synapsis during meiosis
Udt1	Os07g0549600	LOC_Os07g36460	tapetum	Rice Undeveloped Tapetum1 is a major regulator of early tapetum development	Here, we report the identification of rice (Oryza sativa) Undeveloped Tapetum1 (Udt1), which is required for the differentiation of secondary parietal cells to mature tapetal cells
Udt1	Os07g0549600	LOC_Os07g36460	tapetum	Rice Undeveloped Tapetum1 is a major regulator of early tapetum development	DNA microarray analysis identified 958 downregulated and 267 upregulated genes in the udt1-1 anthers, suggesting that Udt1 plays a major role in maintaining tapetum development, starting in early meiosis
Udt1	Os07g0549600	LOC_Os07g36460	transcription factor	Rice Undeveloped Tapetum1 is a major regulator of early tapetum development	This, together with its homology with other basic helix-loop-helix proteins, suggests that UDT1 is a transcription factor
Udt1	Os07g0549600	LOC_Os07g36460	anther	Rice Undeveloped Tapetum1 is a major regulator of early tapetum development	DNA microarray analysis identified 958 downregulated and 267 upregulated genes in the udt1-1 anthers, suggesting that Udt1 plays a major role in maintaining tapetum development, starting in early meiosis
Udt1	Os07g0549600	LOC_Os07g36460	anther	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	While the GAMYB expression was not obviously changed in tdr and udt1-1, and no apparent expression fold change of UDT1 in tdr and gamyb-4, suggesting that TDR may act downstream of GAMYB and UDT1, and GAMYB and UDT1 work in parallel to regulate rice early anther development
Udt1	Os07g0549600	LOC_Os07g36460	tapetum	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	Transcripts of UDT1, which functions in tapetum development during early meiosis, were reduced in dtm1 anthers, as were those of PAIR1, which is involved in chromosome pairing and synapsis during meiosis
Udt1	Os07g0549600	LOC_Os07g36460	tapetum	The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis	These results, together with their mutant phenotypes, suggest that DTM1 plays important roles in the ER membrane during early tapetum development, functioning after MSP1 and before UDT1, and also in meiocyte development, after MEL1 and before PAIR1
Udt1	Os07g0549600	LOC_Os07g36460	meiosis	Rice Undeveloped Tapetum1 is a major regulator of early tapetum development	DNA microarray analysis identified 958 downregulated and 267 upregulated genes in the udt1-1 anthers, suggesting that Udt1 plays a major role in maintaining tapetum development, starting in early meiosis
Udt1	Os07g0549600	LOC_Os07g36460	tapetum	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	These results revealed that the expression of TDR (TAPETUM DEGENERATION RETARDATION), a tapetal cell death regulator, was downregulated in gamyb-4 and udt1 (undeveloped tapetum1)
Udt1	Os07g0549600	LOC_Os07g36460	tapetal	Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development	These results revealed that the expression of TDR (TAPETUM DEGENERATION RETARDATION), a tapetal cell death regulator, was downregulated in gamyb-4 and udt1 (undeveloped tapetum1)
Udt1	Os07g0549600	LOC_Os07g36460	tapetal	Rice Undeveloped Tapetum1 is a major regulator of early tapetum development	Here, we report the identification of rice (Oryza sativa) Undeveloped Tapetum1 (Udt1), which is required for the differentiation of secondary parietal cells to mature tapetal cells
Udt1	Os07g0549600	LOC_Os07g36460	sterility	Rice Undeveloped Tapetum1 is a major regulator of early tapetum development	T-DNA or retrotransposon Tos17 insertions in the Udt1 gene caused male sterility
Udt1	Os07g0549600	LOC_Os07g36460	transcription factor	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
Udt1	Os07g0549600	LOC_Os07g36460	tapetum	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
Udt1	Os07g0549600	LOC_Os07g36460	tapetum degeneration	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
Udt1	Os07g0549600	LOC_Os07g36460	ga	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
Udt1	Os07g0549600	LOC_Os07g36460	GA	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
Udt1	Os07g0549600	LOC_Os07g36460	 ga 	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
Udt1	Os07g0549600	LOC_Os07g36460	male fertility	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	 In addition, we uncover a possible mechanism by which GA regulates male fertility: SLENDER RICE1 (SLR1) interacts with and sequesters two critical transcription factors for tapetum development, UNDEVELOPED TAPETUM1 (UDT1), and TAPETUM DEGENERATION RETARDATION (TDR), and GA alleviates the sequestration by SLR1, thus allowing UDT1 and TDR to activate transcription
UGT2	Os11g0444000	LOC_Os11g25720	transcription factor	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.
UGT2	Os11g0444000	LOC_Os11g25720	transcription factor	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 The transcription factor OsbZIP23 was demonstrated to regulate the UGT2 expression under stress conditions
UGT2	Os11g0444000	LOC_Os11g25720	transcription factor	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 Furthermore, the upstream regulatory mechanism of the UGT2 gene was identified and we found that a bZIP transcription factor, OsbZIP23, can bind to the UGT2 promoter and enhance the UGT2 transcription levels
UGT2	Os11g0444000	LOC_Os11g25720	seedlings	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 We found that seedlings overexpressing UGT2 exhibited better growth than wild type in shoot and root under hydroponic culture with salt stress treatments, while ugt2ko mutant lines suffered much more growth inhibition
UGT2	Os11g0444000	LOC_Os11g25720	root	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 We found that seedlings overexpressing UGT2 exhibited better growth than wild type in shoot and root under hydroponic culture with salt stress treatments, while ugt2ko mutant lines suffered much more growth inhibition
UGT2	Os11g0444000	LOC_Os11g25720	growth	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 We found that seedlings overexpressing UGT2 exhibited better growth than wild type in shoot and root under hydroponic culture with salt stress treatments, while ugt2ko mutant lines suffered much more growth inhibition
UGT2	Os11g0444000	LOC_Os11g25720	shoot	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 We found that seedlings overexpressing UGT2 exhibited better growth than wild type in shoot and root under hydroponic culture with salt stress treatments, while ugt2ko mutant lines suffered much more growth inhibition
UGT2	Os11g0444000	LOC_Os11g25720	stress	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.
UGT2	Os11g0444000	LOC_Os11g25720	stress	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 The transcription factor OsbZIP23 was demonstrated to regulate the UGT2 expression under stress conditions
UGT2	Os11g0444000	LOC_Os11g25720	stress	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 We found that seedlings overexpressing UGT2 exhibited better growth than wild type in shoot and root under hydroponic culture with salt stress treatments, while ugt2ko mutant lines suffered much more growth inhibition
UGT2	Os11g0444000	LOC_Os11g25720	salt	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.
UGT2	Os11g0444000	LOC_Os11g25720	salt	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 was identified to play a crucial role in salt tolerance
UGT2	Os11g0444000	LOC_Os11g25720	salt	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 We found that seedlings overexpressing UGT2 exhibited better growth than wild type in shoot and root under hydroponic culture with salt stress treatments, while ugt2ko mutant lines suffered much more growth inhibition
UGT2	Os11g0444000	LOC_Os11g25720	salt	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 When the soil-grown UGT2 transgenic plants were subjected to salt stress, we also found that ugt2ko mutant lines were severely withered and most of them died, while the overexpression lines grew well and had higher survival rate
UGT2	Os11g0444000	LOC_Os11g25720	tolerance	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.
UGT2	Os11g0444000	LOC_Os11g25720	tolerance	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 was identified to play a crucial role in salt tolerance
UGT2	Os11g0444000	LOC_Os11g25720	salt tolerance	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 was identified to play a crucial role in salt tolerance
UGT2	Os11g0444000	LOC_Os11g25720	salt stress	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.
UGT2	Os11g0444000	LOC_Os11g25720	salt stress	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 We found that seedlings overexpressing UGT2 exhibited better growth than wild type in shoot and root under hydroponic culture with salt stress treatments, while ugt2ko mutant lines suffered much more growth inhibition
UGT2	Os11g0444000	LOC_Os11g25720	salt stress	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 When the soil-grown UGT2 transgenic plants were subjected to salt stress, we also found that ugt2ko mutant lines were severely withered and most of them died, while the overexpression lines grew well and had higher survival rate
UGT2	Os11g0444000	LOC_Os11g25720	stress tolerance	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.
UGT2	Os11g0444000	LOC_Os11g25720	reactive oxygen species	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 Compared with wild-type plants, UGT2 overexpression greatly increased the expression levels of the reactive oxygen species scavenging genes and stress-responsive genes
UGT2	Os11g0444000	LOC_Os11g25720	ER stress	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	 The transcription factor OsbZIP23 was demonstrated to regulate the UGT2 expression under stress conditions
UGT2	Os11g0444000	LOC_Os11g25720	glycosyltransferase	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.
UGT2	Os11g0444000	LOC_Os11g25720	glycosyltransferase	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Rice glycosyltransferase gene UGT2 was identified to play a crucial role in salt tolerance
UGT74J1	Os04g0206700	LOC_Os04g12980	homeostasis	A Ubiquitously Expressed UDP-Glucosyltransferase, UGT74J1, Controls Basal Salicylic Acid Levels in Rice.	Mutants of UGT74J1 generated by genome editing accumulated high levels of SA under non-stressed conditions, indicating that UGT74J1 is a key enzyme for SA homeostasis in rice
UGT74J1	Os04g0206700	LOC_Os04g12980	sa	A Ubiquitously Expressed UDP-Glucosyltransferase, UGT74J1, Controls Basal Salicylic Acid Levels in Rice.	Mutants of UGT74J1 generated by genome editing accumulated high levels of SA under non-stressed conditions, indicating that UGT74J1 is a key enzyme for SA homeostasis in rice
UGT74J1	Os04g0206700	LOC_Os04g12980	SA	A Ubiquitously Expressed UDP-Glucosyltransferase, UGT74J1, Controls Basal Salicylic Acid Levels in Rice.	Mutants of UGT74J1 generated by genome editing accumulated high levels of SA under non-stressed conditions, indicating that UGT74J1 is a key enzyme for SA homeostasis in rice
UGT85E1	Os02g0755500	LOC_Os02g51900	oxidative stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Our findings suggest that UGT85E1 plays an important role in mediating plant response to drought and oxidative stresses
UGT85E1	Os02g0755500	LOC_Os02g51900	drought	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
UGT85E1	Os02g0755500	LOC_Os02g51900	drought	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 UGT85E1 gene is significantly upregulated by drought stress and abscisic acid (ABA) treatment
UGT85E1	Os02g0755500	LOC_Os02g51900	drought	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 The overexpression of UGT85E1 led to an enhanced tolerance in transgenic rice plants to drought stress, while the ugt85e1 mutants of rice showed a more sensitive phenotype to drought stress
UGT85E1	Os02g0755500	LOC_Os02g51900	drought	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Further studies indicated that UGT85E1 overexpression induced ABA accumulation, stomatal closure, enhanced reactive oxygen species (ROS) scavenging capacity, increased proline and sugar contents, and upregulated expression of stress-related genes under drought stress conditions
UGT85E1	Os02g0755500	LOC_Os02g51900	drought	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Moreover, when UGT85E1 was ectopically overexpressed in Arabidopsis, the transgenic plants showed increased tolerance to drought as well as in rice
UGT85E1	Os02g0755500	LOC_Os02g51900	drought	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Our findings suggest that UGT85E1 plays an important role in mediating plant response to drought and oxidative stresses
UGT85E1	Os02g0755500	LOC_Os02g51900	tolerance	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
UGT85E1	Os02g0755500	LOC_Os02g51900	tolerance	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 The overexpression of UGT85E1 led to an enhanced tolerance in transgenic rice plants to drought stress, while the ugt85e1 mutants of rice showed a more sensitive phenotype to drought stress
UGT85E1	Os02g0755500	LOC_Os02g51900	tolerance	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Moreover, when UGT85E1 was ectopically overexpressed in Arabidopsis, the transgenic plants showed increased tolerance to drought as well as in rice
UGT85E1	Os02g0755500	LOC_Os02g51900	oxidative	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Our findings suggest that UGT85E1 plays an important role in mediating plant response to drought and oxidative stresses
UGT85E1	Os02g0755500	LOC_Os02g51900	ABA	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Further studies indicated that UGT85E1 overexpression induced ABA accumulation, stomatal closure, enhanced reactive oxygen species (ROS) scavenging capacity, increased proline and sugar contents, and upregulated expression of stress-related genes under drought stress conditions
UGT85E1	Os02g0755500	LOC_Os02g51900	stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
UGT85E1	Os02g0755500	LOC_Os02g51900	stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 UGT85E1 gene is significantly upregulated by drought stress and abscisic acid (ABA) treatment
UGT85E1	Os02g0755500	LOC_Os02g51900	stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 The overexpression of UGT85E1 led to an enhanced tolerance in transgenic rice plants to drought stress, while the ugt85e1 mutants of rice showed a more sensitive phenotype to drought stress
UGT85E1	Os02g0755500	LOC_Os02g51900	stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Further studies indicated that UGT85E1 overexpression induced ABA accumulation, stomatal closure, enhanced reactive oxygen species (ROS) scavenging capacity, increased proline and sugar contents, and upregulated expression of stress-related genes under drought stress conditions
UGT85E1	Os02g0755500	LOC_Os02g51900	stomatal	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Further studies indicated that UGT85E1 overexpression induced ABA accumulation, stomatal closure, enhanced reactive oxygen species (ROS) scavenging capacity, increased proline and sugar contents, and upregulated expression of stress-related genes under drought stress conditions
UGT85E1	Os02g0755500	LOC_Os02g51900	abscisic acid	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
UGT85E1	Os02g0755500	LOC_Os02g51900	abscisic acid	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 UGT85E1 gene is significantly upregulated by drought stress and abscisic acid (ABA) treatment
UGT85E1	Os02g0755500	LOC_Os02g51900	sugar	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Further studies indicated that UGT85E1 overexpression induced ABA accumulation, stomatal closure, enhanced reactive oxygen species (ROS) scavenging capacity, increased proline and sugar contents, and upregulated expression of stress-related genes under drought stress conditions
UGT85E1	Os02g0755500	LOC_Os02g51900	drought stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
UGT85E1	Os02g0755500	LOC_Os02g51900	drought stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 UGT85E1 gene is significantly upregulated by drought stress and abscisic acid (ABA) treatment
UGT85E1	Os02g0755500	LOC_Os02g51900	drought stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 The overexpression of UGT85E1 led to an enhanced tolerance in transgenic rice plants to drought stress, while the ugt85e1 mutants of rice showed a more sensitive phenotype to drought stress
UGT85E1	Os02g0755500	LOC_Os02g51900	drought stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Further studies indicated that UGT85E1 overexpression induced ABA accumulation, stomatal closure, enhanced reactive oxygen species (ROS) scavenging capacity, increased proline and sugar contents, and upregulated expression of stress-related genes under drought stress conditions
UGT85E1	Os02g0755500	LOC_Os02g51900	reactive oxygen species	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Further studies indicated that UGT85E1 overexpression induced ABA accumulation, stomatal closure, enhanced reactive oxygen species (ROS) scavenging capacity, increased proline and sugar contents, and upregulated expression of stress-related genes under drought stress conditions
UGT85E1	Os02g0755500	LOC_Os02g51900	stress tolerance	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
UGT85E1	Os02g0755500	LOC_Os02g51900	drought stress 	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
UGT85E1	Os02g0755500	LOC_Os02g51900	drought stress 	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 UGT85E1 gene is significantly upregulated by drought stress and abscisic acid (ABA) treatment
UGT85E1	Os02g0755500	LOC_Os02g51900	drought stress 	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Further studies indicated that UGT85E1 overexpression induced ABA accumulation, stomatal closure, enhanced reactive oxygen species (ROS) scavenging capacity, increased proline and sugar contents, and upregulated expression of stress-related genes under drought stress conditions
UGT85E1	Os02g0755500	LOC_Os02g51900	 ABA 	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Further studies indicated that UGT85E1 overexpression induced ABA accumulation, stomatal closure, enhanced reactive oxygen species (ROS) scavenging capacity, increased proline and sugar contents, and upregulated expression of stress-related genes under drought stress conditions
UGT85E1	Os02g0755500	LOC_Os02g51900	glycosyltransferase	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
UGT85E1	Os02g0755500	LOC_Os02g51900	glycosyltransferase	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 In this study, we reported the characterization of a putative glycosyltransferase gene UGT85E1 in rice
UGT85E1	Os02g0755500	LOC_Os02g51900	drought and oxidative stress	Rice Glycosyltransferase Gene UGT85E1 Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	 Our findings suggest that UGT85E1 plays an important role in mediating plant response to drought and oxidative stresses
UTR319	Os07g0265100	LOC_Os07g16150	seed	Isolation of a novel UVB-tolerant rice mutant obtained by exposure to carbon-ion beams	Here, an ultraviolet-B (UVB)-tolerant rice mutant, utr319 (UV Tolerant Rice 319), was isolated from a mutagenized population derived from 2500 M1 seeds (of the UVB-resistant cultivar 'Sasanishiki') that were exposed to carbon ions
UTR319	Os07g0265100	LOC_Os07g16150	resistant	Isolation of a novel UVB-tolerant rice mutant obtained by exposure to carbon-ion beams	Here, an ultraviolet-B (UVB)-tolerant rice mutant, utr319 (UV Tolerant Rice 319), was isolated from a mutagenized population derived from 2500 M1 seeds (of the UVB-resistant cultivar 'Sasanishiki') that were exposed to carbon ions
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	seed	Cloning and expression of a UDP-glucuronic acid decarboxylase gene in rice	The uxs gene was expressed in mature, harvested rice seeds as well as in immature seeds 14 d post-anthesis, suggesting that the uxs gene is necessary at the beginning of the germination period
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	defense	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 These findings reveal OsUXS3 as a direct target of OsDMI3 and demonstrate its involvement in antioxidant defense
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	oxidative stress	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	oxidative stress	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Genetic and biochemical evidence demonstrated that OsUXS3 acts downstream of OsDMI3 to enhance the oxidative stress tolerance conferred by higher catalase (CAT) activity
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	oxidative stress	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Indeed, OsUXS3 interacted with CAT isozyme B (OsCATB), and this interaction was required to increase OsCATB protein abundance under oxidative stress conditions
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	oxidative stress	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Our results indicate that OsDMI3 promotes the association of OsUXS3 with OsCATB to enhance CAT activity under oxidative stress
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	tolerance	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	tolerance	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Genetic and biochemical evidence demonstrated that OsUXS3 acts downstream of OsDMI3 to enhance the oxidative stress tolerance conferred by higher catalase (CAT) activity
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	oxidative	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	oxidative	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Genetic and biochemical evidence demonstrated that OsUXS3 acts downstream of OsDMI3 to enhance the oxidative stress tolerance conferred by higher catalase (CAT) activity
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	oxidative	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Indeed, OsUXS3 interacted with CAT isozyme B (OsCATB), and this interaction was required to increase OsCATB protein abundance under oxidative stress conditions
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	oxidative	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Our results indicate that OsDMI3 promotes the association of OsUXS3 with OsCATB to enhance CAT activity under oxidative stress
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	stress	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	stress	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Genetic and biochemical evidence demonstrated that OsUXS3 acts downstream of OsDMI3 to enhance the oxidative stress tolerance conferred by higher catalase (CAT) activity
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	stress	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Indeed, OsUXS3 interacted with CAT isozyme B (OsCATB), and this interaction was required to increase OsCATB protein abundance under oxidative stress conditions
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	stress	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Our results indicate that OsDMI3 promotes the association of OsUXS3 with OsCATB to enhance CAT activity under oxidative stress
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	stress tolerance	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	stress tolerance	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	 Genetic and biochemical evidence demonstrated that OsUXS3 acts downstream of OsDMI3 to enhance the oxidative stress tolerance conferred by higher catalase (CAT) activity
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	seedlings	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	 The expression of OsUXS3 was significantly up-regulated under NaCl and NaHCO(3) treatments of rice seedlings
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	stress	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	stress	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	 Based on the results above, we can conclude that OsUXS3 might regulate CAT activity by interacting with OsCATs, which is not only characterized for the first time but also regulating Na(+)/K(+) homeostasis, positively regulating the Na(+) ion toxicity tolerance under salt stress in rice
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	salt	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	salt	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	 Based on the results above, we can conclude that OsUXS3 might regulate CAT activity by interacting with OsCATs, which is not only characterized for the first time but also regulating Na(+)/K(+) homeostasis, positively regulating the Na(+) ion toxicity tolerance under salt stress in rice
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	tolerance	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	tolerance	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	 Based on the results above, we can conclude that OsUXS3 might regulate CAT activity by interacting with OsCATs, which is not only characterized for the first time but also regulating Na(+)/K(+) homeostasis, positively regulating the Na(+) ion toxicity tolerance under salt stress in rice
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	salt stress	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	salt stress	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	 Based on the results above, we can conclude that OsUXS3 might regulate CAT activity by interacting with OsCATs, which is not only characterized for the first time but also regulating Na(+)/K(+) homeostasis, positively regulating the Na(+) ion toxicity tolerance under salt stress in rice
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	homeostasis	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	 Furthermore, knockout of OsUXS3 caused excessive accumulation of Na (+) ion and rapid loss of K(+) ion and disrupts Na(+)/K(+) homeostasis under NaCl and NaHCO(3) treatments
UXS|OsUXS3	Os03g0278000	LOC_Os03g16980	reactive oxygen species	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na(+) ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	 Meanwhile, by the genetic and biochemical evidence, knockout of OsUXS3 significantly increased reactive oxygen species (ROS) levels and decreased CAT activity under NaCl and NaHCO(3) treatments in tissue
V14	Os07g0583200	LOC_Os07g39430	leaf	A rice mTERF protein V14 sustains photosynthesis establishment and temperature acclimation in early seedling leaves	Subcellular localization and real-time PCR analyses indicated that V14 encodes a chloroplastic protein ubiquitously expressed in leaves while spiking in the second true leaf
V14	Os07g0583200	LOC_Os07g39430	temperature	A rice mTERF protein V14 sustains photosynthesis establishment and temperature acclimation in early seedling leaves	A rice mTERF protein V14 sustains photosynthesis establishment and temperature acclimation in early seedling leaves
V14	Os07g0583200	LOC_Os07g39430	seedling	A rice mTERF protein V14 sustains photosynthesis establishment and temperature acclimation in early seedling leaves	A rice mTERF protein V14 sustains photosynthesis establishment and temperature acclimation in early seedling leaves
V14	Os07g0583200	LOC_Os07g39430	photosynthesis	A rice mTERF protein V14 sustains photosynthesis establishment and temperature acclimation in early seedling leaves	A rice mTERF protein V14 sustains photosynthesis establishment and temperature acclimation in early seedling leaves
v2	Os03g0320900	LOC_Os03g20460	temperature	The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria	The v2 mutant is temperature-sensitive and develops chlorotic leaves at restrictive temperatures
v2	Os03g0320900	LOC_Os03g20460	leaf	The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria	The v2 mutation causes inhibition of chloroplast differentiation; in particular, it disrupts the chloroplast translation machinery during early leaf development [Sugimoto et al
v2	Os03g0320900	LOC_Os03g20460	mitochondria	The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria	Here we show that a novel gene, VIRESCENT 2 (V2), encodes a new type of GK (designated pt/mtGK) that is localized in plastids and mitochondria
v2	Os03g0320900	LOC_Os03g20460	leaf development	The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria	The v2 mutation causes inhibition of chloroplast differentiation; in particular, it disrupts the chloroplast translation machinery during early leaf development [Sugimoto et al
v2	Os03g0320900	LOC_Os03g20460	chloroplast	The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria	The v2 mutation causes inhibition of chloroplast differentiation; in particular, it disrupts the chloroplast translation machinery during early leaf development [Sugimoto et al
VAL1|GARS	Os08g0191200	LOC_Os08g09210	leaf	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	Our results demonstrate that VAL1 is a crucial enzyme in the de novo purine biosynthesis pathway and is involved in regulating chloroplast development, chlorophyll metabolism, and cell division during leaf development in rice
VAL1|GARS	Os08g0191200	LOC_Os08g09210	chloroplast	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	Subcellular localization analysis demonstrated that VAL1 was localized in the chloroplast
VAL1|GARS	Os08g0191200	LOC_Os08g09210	chloroplast	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	Our results demonstrate that VAL1 is a crucial enzyme in the de novo purine biosynthesis pathway and is involved in regulating chloroplast development, chlorophyll metabolism, and cell division during leaf development in rice
VAL1|GARS	Os08g0191200	LOC_Os08g09210	leaf development	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	Our results demonstrate that VAL1 is a crucial enzyme in the de novo purine biosynthesis pathway and is involved in regulating chloroplast development, chlorophyll metabolism, and cell division during leaf development in rice
VAL1|GARS	Os08g0191200	LOC_Os08g09210	development	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	Our results demonstrate that VAL1 is a crucial enzyme in the de novo purine biosynthesis pathway and is involved in regulating chloroplast development, chlorophyll metabolism, and cell division during leaf development in rice
VAL1|GARS	Os08g0191200	LOC_Os08g09210	map-based cloning	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	Map-based cloning revealed that VAL1 encodes a phosphoribosylamine-glycine ligase (PurD), the second enzyme in the de novo purine biosynthesis pathway
VAL1|GARS	Os08g0191200	LOC_Os08g09210	cell division	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	Our results demonstrate that VAL1 is a crucial enzyme in the de novo purine biosynthesis pathway and is involved in regulating chloroplast development, chlorophyll metabolism, and cell division during leaf development in rice
VAL1|GARS	Os08g0191200	LOC_Os08g09210	chloroplast development	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	Our results demonstrate that VAL1 is a crucial enzyme in the de novo purine biosynthesis pathway and is involved in regulating chloroplast development, chlorophyll metabolism, and cell division during leaf development in rice
VAL1|GARS	Os08g0191200	LOC_Os08g09210	leaf	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Our results indicated that GARS was involved in chloroplast development at early leaf development by affecting the expression of plastid-encoded genes
VAL1|GARS	Os08g0191200	LOC_Os08g09210	chloroplast	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).
VAL1|GARS	Os08g0191200	LOC_Os08g09210	chloroplast	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	GARS protein displayed a typical chloroplast location pattern in rice protoplasts
VAL1|GARS	Os08g0191200	LOC_Os08g09210	chloroplast	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Our results indicated that GARS was involved in chloroplast development at early leaf development by affecting the expression of plastid-encoded genes
VAL1|GARS	Os08g0191200	LOC_Os08g09210	leaf development	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Our results indicated that GARS was involved in chloroplast development at early leaf development by affecting the expression of plastid-encoded genes
VAL1|GARS	Os08g0191200	LOC_Os08g09210	seedling	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	In this research, we characterized a novel gars mutant with white striped leaves at the seedling stage
VAL1|GARS	Os08g0191200	LOC_Os08g09210	development	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).
VAL1|GARS	Os08g0191200	LOC_Os08g09210	development	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	GARS encodes an enzyme catalyzing the second step of purine nucleotide biosynthesis and plays an important role to maintain the development of chloroplasts in juvenile plants by affecting the expression of plastid-encoded genes
VAL1|GARS	Os08g0191200	LOC_Os08g09210	development	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Our results indicated that GARS was involved in chloroplast development at early leaf development by affecting the expression of plastid-encoded genes
VAL1|GARS	Os08g0191200	LOC_Os08g09210	chloroplast development	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).
VAL1|GARS	Os08g0191200	LOC_Os08g09210	chloroplast development	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Our results indicated that GARS was involved in chloroplast development at early leaf development by affecting the expression of plastid-encoded genes
VLN2	Os03g0356700	LOC_Os03g24220	gravitropic response	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	We show that vln2 mutant plants exhibit a hypersensitive gravitropic response, faster recycling of PIN2 (an auxin efflux carrier), and altered auxin distribution
VLN2	Os03g0356700	LOC_Os03g24220	auxin	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.
VLN2	Os03g0356700	LOC_Os03g24220	auxin	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	We show that vln2 mutant plants exhibit a hypersensitive gravitropic response, faster recycling of PIN2 (an auxin efflux carrier), and altered auxin distribution
VLN2	Os03g0356700	LOC_Os03g24220	auxin	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	Together, our results demonstrate that VLN2 plays an important role in regulating plant architecture by modulating MF dynamics, recycling of PIN2, and polar auxin transport
VLN2	Os03g0356700	LOC_Os03g24220	architecture	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.
VLN2	Os03g0356700	LOC_Os03g24220	architecture	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	Together, our results demonstrate that VLN2 plays an important role in regulating plant architecture by modulating MF dynamics, recycling of PIN2, and polar auxin transport
VLN2	Os03g0356700	LOC_Os03g24220	auxin transport	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.
VLN2	Os03g0356700	LOC_Os03g24220	auxin transport	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	Together, our results demonstrate that VLN2 plays an important role in regulating plant architecture by modulating MF dynamics, recycling of PIN2, and polar auxin transport
VLN2	Os03g0356700	LOC_Os03g24220	plant architecture	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.
VLN2	Os03g0356700	LOC_Os03g24220	plant architecture	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	Together, our results demonstrate that VLN2 plays an important role in regulating plant architecture by modulating MF dynamics, recycling of PIN2, and polar auxin transport
VQ8	Os02g0539500	LOC_Os02g33600	thermotolerance	The WRKY10-VQ8 module safely and effectively regulates rice thermotolerance	The WRKY10-VQ8 module safely and effectively regulates rice thermotolerance
VQ8	Os02g0539500	LOC_Os02g33600	heat stress	The WRKY10-VQ8 module safely and effectively regulates rice thermotolerance	The functional module of WRKY10-VQ8 provides safe and effective regulatory mechanisms in the heat stress response.
Vsl1	Os08g0290100	LOC_Os08g19320	senescence	Characterization and Fine Mapping of a Novel Vegetative Senescence Lethal Mutant Locus in Rice	Characterization and Fine Mapping of a Novel Vegetative Senescence Lethal Mutant Locus in Rice
VYL|NAL9	Os03g0411500	LOC_Os03g29810	leaf	A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants	In this work, we isolated a virescent yellow leaf (vyl) mutant in rice (Oryza sativa), which produces chlorotic leaves throughout the entire growth period
VYL|NAL9	Os03g0411500	LOC_Os03g29810	leaf	A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants	VYL expression is constitutive in most tissues examined but most abundant in leaf sections containing chloroplasts in early stages of development
VYL|NAL9	Os03g0411500	LOC_Os03g29810	growth	A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants	In this work, we isolated a virescent yellow leaf (vyl) mutant in rice (Oryza sativa), which produces chlorotic leaves throughout the entire growth period
VYL|NAL9	Os03g0411500	LOC_Os03g29810	chloroplast	A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants	Positional cloning revealed that the VYL gene encodes a protein homologous to the Arabidopsis ClpP6 subunit and that it is targeted to the chloroplast
VYL|NAL9	Os03g0411500	LOC_Os03g29810	chloroplast	A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants	VYL expression is constitutive in most tissues examined but most abundant in leaf sections containing chloroplasts in early stages of development
WAF1|OsHEN1	Os07g0164000	LOC_Os07g06970	floral	WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice	About half of the waf1 mutants showed seedling lethality due to defects in SAM maintenance, but the rest survived to the reproductive phase and exhibited pleiotropic phenotypes in leaf morphology and floral development
WAF1|OsHEN1	Os07g0164000	LOC_Os07g06970	leaf	WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice	The rice wavy leaf1 (waf1) mutant has been identified as an embryonic mutant resembling shoot organization1 (sho1) and sho2, homologs of a loss-of-function mutant of DICER-LIKE4 and a hypomorphic mutant of ARGONAUTE7, respectively, which both act in the ta-siRNA production pathway
WAF1|OsHEN1	Os07g0164000	LOC_Os07g06970	leaf	WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice	About half of the waf1 mutants showed seedling lethality due to defects in SAM maintenance, but the rest survived to the reproductive phase and exhibited pleiotropic phenotypes in leaf morphology and floral development
WAF1|OsHEN1	Os07g0164000	LOC_Os07g06970	leaf	WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice	Our results indicate that stabilization of small RNAs by WAF1 is indispensable for rice development, especially for SAM maintenance and leaf morphogenesis governed by the ta-siRNA pathway
WAF1|OsHEN1	Os07g0164000	LOC_Os07g06970	reproductive	WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice	About half of the waf1 mutants showed seedling lethality due to defects in SAM maintenance, but the rest survived to the reproductive phase and exhibited pleiotropic phenotypes in leaf morphology and floral development
WAF1|OsHEN1	Os07g0164000	LOC_Os07g06970	shoot	WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice	The rice wavy leaf1 (waf1) mutant has been identified as an embryonic mutant resembling shoot organization1 (sho1) and sho2, homologs of a loss-of-function mutant of DICER-LIKE4 and a hypomorphic mutant of ARGONAUTE7, respectively, which both act in the ta-siRNA production pathway
WAF1|OsHEN1	Os07g0164000	LOC_Os07g06970	seedling	WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice	About half of the waf1 mutants showed seedling lethality due to defects in SAM maintenance, but the rest survived to the reproductive phase and exhibited pleiotropic phenotypes in leaf morphology and floral development
WAK10	Os01g0689900	LOC_Os01g49529	stem	A receptor-like kinase controls the amplitude of secondary cell wall synthesis in rice.	 Mutation in the WAK10 gene exhibited increased cell wall thickening in stem sclerenchyma and reduced cell expansion in the stem
WAK10	Os01g0689900	LOC_Os01g49529	stem	A receptor-like kinase controls the amplitude of secondary cell wall synthesis in rice.	 The pectic oligosaccharide binding regulated WAK10 phosphorylation activity, the amplitude of secondary wall deposition, and ultimately, stem height
WAK10	Os01g0689900	LOC_Os01g49529	domestication	A receptor-like kinase controls the amplitude of secondary cell wall synthesis in rice.	 Rice population analyses revealed active enrichment of the short-stem WAK10 ectodomain alleles in japonica subspecies during domestication
WAK10	Os01g0689900	LOC_Os01g49529	cell wall	A receptor-like kinase controls the amplitude of secondary cell wall synthesis in rice.	 Mutation in the WAK10 gene exhibited increased cell wall thickening in stem sclerenchyma and reduced cell expansion in the stem
WAK10	Os01g0689900	LOC_Os01g49529	height	A receptor-like kinase controls the amplitude of secondary cell wall synthesis in rice.	 The pectic oligosaccharide binding regulated WAK10 phosphorylation activity, the amplitude of secondary wall deposition, and ultimately, stem height
WAK10	Os01g0689900	LOC_Os01g49529	cell expansion	A receptor-like kinase controls the amplitude of secondary cell wall synthesis in rice.	 Mutation in the WAK10 gene exhibited increased cell wall thickening in stem sclerenchyma and reduced cell expansion in the stem
WAL3	Os03g0644200	LOC_Os03g44210	leaf	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 In this study, we identified a new PLS-type protein, WAL3 (Whole Albino Leaf on Chromosome 3), playing important roles in plant chloroplast development
WAL3	Os03g0644200	LOC_Os03g44210	chloroplast	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.
WAL3	Os03g0644200	LOC_Os03g44210	chloroplast	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 In this study, we identified a new PLS-type protein, WAL3 (Whole Albino Leaf on Chromosome 3), playing important roles in plant chloroplast development
WAL3	Os03g0644200	LOC_Os03g44210	chloroplast	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 Knockout of WAL3 gene in Nipponbare variety caused abnormal chloroplast development and showed an albino lethal phenotype
WAL3	Os03g0644200	LOC_Os03g44210	chloroplast	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 In summary, our study revealed that WAL3 is essential for chloroplast development in rice
WAL3	Os03g0644200	LOC_Os03g44210	development	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.
WAL3	Os03g0644200	LOC_Os03g44210	development	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 In this study, we identified a new PLS-type protein, WAL3 (Whole Albino Leaf on Chromosome 3), playing important roles in plant chloroplast development
WAL3	Os03g0644200	LOC_Os03g44210	development	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 Knockout of WAL3 gene in Nipponbare variety caused abnormal chloroplast development and showed an albino lethal phenotype
WAL3	Os03g0644200	LOC_Os03g44210	development	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 In summary, our study revealed that WAL3 is essential for chloroplast development in rice
WAL3	Os03g0644200	LOC_Os03g44210	photosynthesis	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 The decreased abundance of photosynthesis-related proteins in wal3 mutants indicated WAL3 influence photosynthesis
WAL3	Os03g0644200	LOC_Os03g44210	R protein	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.
WAL3	Os03g0644200	LOC_Os03g44210	chloroplast development	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.
WAL3	Os03g0644200	LOC_Os03g44210	chloroplast development	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 In this study, we identified a new PLS-type protein, WAL3 (Whole Albino Leaf on Chromosome 3), playing important roles in plant chloroplast development
WAL3	Os03g0644200	LOC_Os03g44210	chloroplast development	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 Knockout of WAL3 gene in Nipponbare variety caused abnormal chloroplast development and showed an albino lethal phenotype
WAL3	Os03g0644200	LOC_Os03g44210	chloroplast development	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 In summary, our study revealed that WAL3 is essential for chloroplast development in rice
WAL3	Os03g0644200	LOC_Os03g44210	chlorophyll	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	 Transcriptome sequencing showed that WAL3 involved in multiple metabolic pathways including the chlorophyll synthesis and photosynthetic related metabolic pathways
WCR1	Os01g0921800	LOC_Os01g69270	cell death	Natural variation in WHITE-CORE RATE 1 regulates redox homeostasis in rice endosperm to affect grain quality.	 WCR1 positively affects the transcription of the metallothionein gene MT2b and interacts with MT2b to inhibit its 26S proteasome-mediated degradation, leading to decreased reactive oxygen species production and delayed programmed cell death in rice endosperm
WCR1	Os01g0921800	LOC_Os01g69270	endosperm	Natural variation in WHITE-CORE RATE 1 regulates redox homeostasis in rice endosperm to affect grain quality.	 WCR1 positively affects the transcription of the metallothionein gene MT2b and interacts with MT2b to inhibit its 26S proteasome-mediated degradation, leading to decreased reactive oxygen species production and delayed programmed cell death in rice endosperm
WCR1	Os01g0921800	LOC_Os01g69270	reactive oxygen species	Natural variation in WHITE-CORE RATE 1 regulates redox homeostasis in rice endosperm to affect grain quality.	 WCR1 positively affects the transcription of the metallothionein gene MT2b and interacts with MT2b to inhibit its 26S proteasome-mediated degradation, leading to decreased reactive oxygen species production and delayed programmed cell death in rice endosperm
WCR1	Os01g0921800	LOC_Os01g69270	programmed cell death	Natural variation in WHITE-CORE RATE 1 regulates redox homeostasis in rice endosperm to affect grain quality.	 WCR1 positively affects the transcription of the metallothionein gene MT2b and interacts with MT2b to inhibit its 26S proteasome-mediated degradation, leading to decreased reactive oxygen species production and delayed programmed cell death in rice endosperm
WDA1	Os10g0471100	LOC_Os10g33250	cuticle	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
WDA1	Os10g0471100	LOC_Os10g33250	tapetum	Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development	These biochemical and developmental defects in tapetum found in wda1 mutants are earlier events than those in other male-sterile mutants, which showed defects of lipidic molecules in exine
WDA1	Os10g0471100	LOC_Os10g33250	pollen	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
WDA1	Os10g0471100	LOC_Os10g33250	tapetal	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
WDA1	Os10g0471100	LOC_Os10g33250	sterile	Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development	These biochemical and developmental defects in tapetum found in wda1 mutants are earlier events than those in other male-sterile mutants, which showed defects of lipidic molecules in exine
WDA1	Os10g0471100	LOC_Os10g33250	anther	Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development	Here, we report the characterization of a T-DNA insertional mutant in the Wax-deficient anther1 (Wda1) gene of rice (Oryza sativa), which shows significant defects in the biosynthesis of very-long-chain fatty acids in both layers
WDA1	Os10g0471100	LOC_Os10g33250	anther	The ATP-binding cassette transporter OsABCG15 is required for anther development and pollen fertility in rice	Two genes CYP704B2 and WDA1, involved in the biosynthesis of very-long-chain fatty acids for the establishment of the anther cuticle and pollen exine, were downregulated in osabcg15 mutant, suggesting that OsABCG15 may play a key function in the processes related to sporopollenin biosynthesis or sporopollenin transfer from tapetal cells to anther locules
WDL1	Os11g0708400	LOC_Os11g48070	cuticle	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice	Here we report the identification of a cuticle membrane mutant, wilted dwarf and lethal 1 (wdl1), from a rice T-DNA insertional population
WDL1	Os11g0708400	LOC_Os11g48070	cuticle	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice
WDL1	Os11g0708400	LOC_Os11g48070	stomatal	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice	Stomatal cells and pavement cells are smaller in the mutant, suggesting that WDL1 affects epidermal cell differentiation
WDL1	Os11g0708400	LOC_Os11g48070	stomata	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice	Stomatal cells and pavement cells are smaller in the mutant, suggesting that WDL1 affects epidermal cell differentiation
WDL1	Os11g0708400	LOC_Os11g48070	cutin	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice	We propose that WDL1 is involved in cutin organization, affecting depolymerizable components
WDL1	Os11g0708400	LOC_Os11g48070	dwarf	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice	Here we report the identification of a cuticle membrane mutant, wilted dwarf and lethal 1 (wdl1), from a rice T-DNA insertional population
WDL1	Os11g0708400	LOC_Os11g48070	dwarf	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice
WED	Os11g0646300	LOC_Os11g42660	defense	Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.	Intriguingly, besides pattern-triggered immunity, effector-triggered immunity conferred by different R proteins, including Xa3/Xa26, Xa4, and Xa21, was also disturbed by wed to a certain extent, indicating the existence of shared regulatory mechanisms for various defense systems
WED	Os11g0646300	LOC_Os11g42660	salicylic acid	Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.	The unexpected accumulation of salicylic acid (SA), along with downregulation of NONEXPRESSOR OF PR1 (NPR1), in wed indicates the potential presence of a feedback regulation loop of SA biosynthesis in rice
WED	Os11g0646300	LOC_Os11g42660	R protein	Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.	Intriguingly, besides pattern-triggered immunity, effector-triggered immunity conferred by different R proteins, including Xa3/Xa26, Xa4, and Xa21, was also disturbed by wed to a certain extent, indicating the existence of shared regulatory mechanisms for various defense systems
WED	Os11g0646300	LOC_Os11g42660	immunity	Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.	Intriguingly, besides pattern-triggered immunity, effector-triggered immunity conferred by different R proteins, including Xa3/Xa26, Xa4, and Xa21, was also disturbed by wed to a certain extent, indicating the existence of shared regulatory mechanisms for various defense systems
WED	Os11g0646300	LOC_Os11g42660	sa	Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.	The unexpected accumulation of salicylic acid (SA), along with downregulation of NONEXPRESSOR OF PR1 (NPR1), in wed indicates the potential presence of a feedback regulation loop of SA biosynthesis in rice
WED	Os11g0646300	LOC_Os11g42660	sa	Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.	Epistasis analyses illustrated that SA accumulation and the NLR-associated components RAR1, OsRac1, and PhyB are indispensable for the wed phenotypes
WED	Os11g0646300	LOC_Os11g42660	SA	Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.	The unexpected accumulation of salicylic acid (SA), along with downregulation of NONEXPRESSOR OF PR1 (NPR1), in wed indicates the potential presence of a feedback regulation loop of SA biosynthesis in rice
WED	Os11g0646300	LOC_Os11g42660	SA	Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.	Epistasis analyses illustrated that SA accumulation and the NLR-associated components RAR1, OsRac1, and PhyB are indispensable for the wed phenotypes
WEG1	Os09g0509300	LOC_Os09g33510	root	WEG1, which encodes a cell wall hydroxyproline-rich glycoprotein, is essential for parental root elongation controlling lateral root formation in rice.	Consistent with this phenotype, was the expression of the WEG1 gene, which encodes a putative member of the hydroxyproline-rich glycoprotein family that regulates cell wall extensibility, in the root elongation zone
WEG1	Os09g0509300	LOC_Os09g33510	root	WEG1, which encodes a cell wall hydroxyproline-rich glycoprotein, is essential for parental root elongation controlling lateral root formation in rice.	These results suggest that the MNU-induced weg1 mutated gene regulates the auxin-independent parental root elongation that controls the number of likely auxin-induced L-type LRs, thus reflecting its importance in improving rice root architecture
WEG1	Os09g0509300	LOC_Os09g33510	root elongation	WEG1, which encodes a cell wall hydroxyproline-rich glycoprotein, is essential for parental root elongation controlling lateral root formation in rice.	Consistent with this phenotype, was the expression of the WEG1 gene, which encodes a putative member of the hydroxyproline-rich glycoprotein family that regulates cell wall extensibility, in the root elongation zone
WEG1	Os09g0509300	LOC_Os09g33510	root elongation	WEG1, which encodes a cell wall hydroxyproline-rich glycoprotein, is essential for parental root elongation controlling lateral root formation in rice.	These results suggest that the MNU-induced weg1 mutated gene regulates the auxin-independent parental root elongation that controls the number of likely auxin-induced L-type LRs, thus reflecting its importance in improving rice root architecture
WEG1	Os09g0509300	LOC_Os09g33510	architecture	WEG1, which encodes a cell wall hydroxyproline-rich glycoprotein, is essential for parental root elongation controlling lateral root formation in rice.	These results suggest that the MNU-induced weg1 mutated gene regulates the auxin-independent parental root elongation that controls the number of likely auxin-induced L-type LRs, thus reflecting its importance in improving rice root architecture
WEG1	Os09g0509300	LOC_Os09g33510	cell wall	WEG1, which encodes a cell wall hydroxyproline-rich glycoprotein, is essential for parental root elongation controlling lateral root formation in rice.	Consistent with this phenotype, was the expression of the WEG1 gene, which encodes a putative member of the hydroxyproline-rich glycoprotein family that regulates cell wall extensibility, in the root elongation zone
WEG1	Os09g0509300	LOC_Os09g33510	root architecture	WEG1, which encodes a cell wall hydroxyproline-rich glycoprotein, is essential for parental root elongation controlling lateral root formation in rice.	These results suggest that the MNU-induced weg1 mutated gene regulates the auxin-independent parental root elongation that controls the number of likely auxin-induced L-type LRs, thus reflecting its importance in improving rice root architecture
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 The wfsl1 displayed white fine stripe leaves since tillering stage and abnormal chloroplast structure
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 RNA-seq analysis revealed that chloroplast development and photosynthesis genes were significantly affected in wfsl1 plants
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Levels of WFSL1 and chloroplast encoded proteins were decreased in wfsl1 mutants via western blot analysis
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Compared with WT, wfsl1 exhibits lower Chl content and defective in biogenesis of chloroplast ribosomes, which resulted in reduced grain yield
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Taken together, our results show that WFSL1 is critical for chloroplast development, ribosome biogenesis, and light energy utilization, finally affects grain yield
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	tillering	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 The wfsl1 displayed white fine stripe leaves since tillering stage and abnormal chloroplast structure
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	grain	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Compared with WT, wfsl1 exhibits lower Chl content and defective in biogenesis of chloroplast ribosomes, which resulted in reduced grain yield
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	grain	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Taken together, our results show that WFSL1 is critical for chloroplast development, ribosome biogenesis, and light energy utilization, finally affects grain yield
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	development	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 RNA-seq analysis revealed that chloroplast development and photosynthesis genes were significantly affected in wfsl1 plants
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	map-based cloning	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Map-based cloning and Bioinformatic analysis indicated that WFSL1 on chromosome 1 contains an &quot;A&quot; to &quot;T&quot; substitution in protein coding region, and encodes a putative metal-dependent phosphohydrolase with HD domain at the N-terminus
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	photosynthesis	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 RNA-seq analysis revealed that chloroplast development and photosynthesis genes were significantly affected in wfsl1 plants
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	grain yield	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Compared with WT, wfsl1 exhibits lower Chl content and defective in biogenesis of chloroplast ribosomes, which resulted in reduced grain yield
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	grain yield	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Taken together, our results show that WFSL1 is critical for chloroplast development, ribosome biogenesis, and light energy utilization, finally affects grain yield
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	yield	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Compared with WT, wfsl1 exhibits lower Chl content and defective in biogenesis of chloroplast ribosomes, which resulted in reduced grain yield
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	yield	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Taken together, our results show that WFSL1 is critical for chloroplast development, ribosome biogenesis, and light energy utilization, finally affects grain yield
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast development	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 RNA-seq analysis revealed that chloroplast development and photosynthesis genes were significantly affected in wfsl1 plants
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast development	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	 Taken together, our results show that WFSL1 is critical for chloroplast development, ribosome biogenesis, and light energy utilization, finally affects grain yield
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast	STRIPE3, encoding a human dNTPase SAMHD1 homolog, regulates chloroplast development in rice.	 Here, we isolated and characterized the stripe3 (st3) mutant which exhibited white-striped leaves with reduced chlorophyll content and abnormal chloroplast development during the seedling stage, but gradually produced nearly normal green leaves as it developed
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	development	STRIPE3, encoding a human dNTPase SAMHD1 homolog, regulates chloroplast development in rice.	 Here, we isolated and characterized the stripe3 (st3) mutant which exhibited white-striped leaves with reduced chlorophyll content and abnormal chloroplast development during the seedling stage, but gradually produced nearly normal green leaves as it developed
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	seedling	STRIPE3, encoding a human dNTPase SAMHD1 homolog, regulates chloroplast development in rice.	 Here, we isolated and characterized the stripe3 (st3) mutant which exhibited white-striped leaves with reduced chlorophyll content and abnormal chloroplast development during the seedling stage, but gradually produced nearly normal green leaves as it developed
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast development	STRIPE3, encoding a human dNTPase SAMHD1 homolog, regulates chloroplast development in rice.	 Here, we isolated and characterized the stripe3 (st3) mutant which exhibited white-striped leaves with reduced chlorophyll content and abnormal chloroplast development during the seedling stage, but gradually produced nearly normal green leaves as it developed
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chlorophyll	STRIPE3, encoding a human dNTPase SAMHD1 homolog, regulates chloroplast development in rice.	 Here, we isolated and characterized the stripe3 (st3) mutant which exhibited white-striped leaves with reduced chlorophyll content and abnormal chloroplast development during the seedling stage, but gradually produced nearly normal green leaves as it developed
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chlorophyll content	STRIPE3, encoding a human dNTPase SAMHD1 homolog, regulates chloroplast development in rice.	 Here, we isolated and characterized the stripe3 (st3) mutant which exhibited white-striped leaves with reduced chlorophyll content and abnormal chloroplast development during the seedling stage, but gradually produced nearly normal green leaves as it developed
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	leaf	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 In addition, the ROS accumulation level was significantly elevated, and the ROS scavenging enzyme activity was significantly decreased in wsl214 leaf tissue
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	leaf	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 As a result of elevated ROS levels, wsl214 leaf cells underwent DNA damage and programmed cell death
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	leaf	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 The WSL214 encodes an HD domain phosphohydrolase and is widely expressed in various tissues of rice, especially at the highest level in leaf tissue
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	leaf	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 Further research showed that WSL214 promoted the homeostasis of rice leaf cellular ROS in two ways
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 Compared to WT, wsl214 exhibited white-striped leaves, defective chloroplast development, reduced net photosynthetic rate, and overexcitation of photosynthetically active reaction centers
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 Second, WSL214 promoted chloroplast development, kept photosynthesis working properly, and reduced ROS produced by photosynthesis
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	defense response	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	defense response	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 However, wsl214 defense response to exogenous pathogens was also enhanced by high ROS levels
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	defense	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	defense	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 However, wsl214 defense response to exogenous pathogens was also enhanced by high ROS levels
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	photosynthesis	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 Second, WSL214 promoted chloroplast development, kept photosynthesis working properly, and reduced ROS produced by photosynthesis
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	cell death	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 As a result of elevated ROS levels, wsl214 leaf cells underwent DNA damage and programmed cell death
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	pathogen	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	homeostasis	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	WSL214 plays an important role in promoting cellular ROS homeostasis by enhancing catalase activity and reducing photosynthetic ROS production
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	homeostasis	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 Further research showed that WSL214 promoted the homeostasis of rice leaf cellular ROS in two ways
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast development	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 Compared to WT, wsl214 exhibited white-striped leaves, defective chloroplast development, reduced net photosynthetic rate, and overexcitation of photosynthetically active reaction centers
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	chloroplast development	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 Second, WSL214 promoted chloroplast development, kept photosynthesis working properly, and reduced ROS produced by photosynthesis
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	programmed cell death	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 As a result of elevated ROS levels, wsl214 leaf cells underwent DNA damage and programmed cell death
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	catalase	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	WSL214 plays an important role in promoting cellular ROS homeostasis by enhancing catalase activity and reducing photosynthetic ROS production
WFSL1|STRIPE3|WSL214	Os01g0109300	LOC_Os01g01920	catalase	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	 First, WSL214 increased the expression of the catalase gene OsCATC, making the intracellular ROS scavenging enzyme more active
WGL2	Os03g0769100	LOC_Os03g55930	chloroplast	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	WGL2 encodes a conserved ribosomal protein, which localizes to the chloroplast
WGL2	Os03g0769100	LOC_Os03g55930	chloroplast	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	WGL2 is preferentially expressed in the leaf, and mutating WGL2 led to obvious changes in the expression of genes related to chlorophyll biosynthesis, photosynthesis, chloroplast development, and ribosome development compared with wild-type
WGL2	Os03g0769100	LOC_Os03g55930	chloroplast	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	WGL2 encodes a conserved ribosomal protein, which localizes to the chloroplast
WGL2	Os03g0769100	LOC_Os03g55930	chloroplast	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	WGL2 is essential for early chloroplast development in rice
WGL2	Os03g0769100	LOC_Os03g55930	development	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	WGL2 is preferentially expressed in the leaf, and mutating WGL2 led to obvious changes in the expression of genes related to chlorophyll biosynthesis, photosynthesis, chloroplast development, and ribosome development compared with wild-type
WGL2	Os03g0769100	LOC_Os03g55930	development	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	WGL2 is essential for early chloroplast development in rice
WGL2	Os03g0769100	LOC_Os03g55930	map-based cloning	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	Map-based cloning and DNA sequencing analyses of wgl2 revealed a single-nucleotide substitution (G to T) in the first exon of LOC_Os03g55930, which resulted in a substitution of glycine 92 to valine (G92<U+00A0>V)
WGL2	Os03g0769100	LOC_Os03g55930	chloroplast development	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	WGL2 is preferentially expressed in the leaf, and mutating WGL2 led to obvious changes in the expression of genes related to chlorophyll biosynthesis, photosynthesis, chloroplast development, and ribosome development compared with wild-type
WGL2	Os03g0769100	LOC_Os03g55930	chloroplast development	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	WGL2 is essential for early chloroplast development in rice
WIN1	Os03g0347700	LOC_Os03g22600	leaf	Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice.	However, upon ectopic expression, WIN1 appears on the longitudinal sides of leaf sheath cells, correlated with the appearance of a spiral phenotype in shoots
WIN1	Os03g0347700	LOC_Os03g22600	sheath	Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice.	However, upon ectopic expression, WIN1 appears on the longitudinal sides of leaf sheath cells, correlated with the appearance of a spiral phenotype in shoots
WIN1	Os03g0347700	LOC_Os03g22600	auxin	Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice.	Interestingly, ectopic expression of WIN1 does not cause either unequal auxin distribution or actin filament differences in roots, so a spiral phenotype is not observed in roots
WIN1	Os03g0347700	LOC_Os03g22600	auxin	Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice.	The action of WIN1 appears to be different from that of other proteins causing a spiral phenotype, and it is likely that WIN1 is involved in 1-N-naphthylphthalamic acid-insensitive plasmodesmata-mediated auxin transport
WIN1	Os03g0347700	LOC_Os03g22600	auxin transport	Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice.	The action of WIN1 appears to be different from that of other proteins causing a spiral phenotype, and it is likely that WIN1 is involved in 1-N-naphthylphthalamic acid-insensitive plasmodesmata-mediated auxin transport
WIN1	Os03g0347700	LOC_Os03g22600	R protein	Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice.	The action of WIN1 appears to be different from that of other proteins causing a spiral phenotype, and it is likely that WIN1 is involved in 1-N-naphthylphthalamic acid-insensitive plasmodesmata-mediated auxin transport
WIN1	Os03g0347700	LOC_Os03g22600	plasma membrane	Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice.	The WIN1 protein is predominantly localized to the plasma membrane, but is also co-localized to plasmodesmata, where it exhibits a punctate pattern
WLP1	Os01g0749200	LOC_Os01g54540	photosynthesis	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	The transcription pattern of a number of genes involved in plastidial transcription/translation and in photosynthesis was altered in the wlp1 mutants
WLP1	Os01g0749200	LOC_Os01g54540	chloroplast	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	The WLP1 protein localized to the chloroplast
WLP1	Os01g0749200	LOC_Os01g54540	chloroplast	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	These results reveal that WLP1 is required for normal chloroplast development, especially under low temperature conditions
WLP1	Os01g0749200	LOC_Os01g54540	chloroplast	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions
WLP1	Os01g0749200	LOC_Os01g54540	panicle	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	Here we describe a rice mutant named wlp1 (white leaf and panicles 1) selected from a population of tissue culture regenerants
WLP1	Os01g0749200	LOC_Os01g54540	leaf	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	Here we describe a rice mutant named wlp1 (white leaf and panicles 1) selected from a population of tissue culture regenerants
WLP1	Os01g0749200	LOC_Os01g54540	seedling	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	WLP1 was mainly transcribed in green tissues and particularly abundantly in the early seedling leaves
WLP1	Os01g0749200	LOC_Os01g54540	temperature	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	In addition, the expression level of WLP1 was induced by the low temperature
WLP1	Os01g0749200	LOC_Os01g54540	temperature	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	These results reveal that WLP1 is required for normal chloroplast development, especially under low temperature conditions
WLP1	Os01g0749200	LOC_Os01g54540	temperature	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	chloroplast	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Expression levels of PEP-encoded genes, chloroplast development genes and photosynthesis-related genes were compromised in wlp2 mutants, indicating that WLP2 is essential for normal chloroplast biogenesis
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	chloroplast	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Our results strongly indicate that WLP2 protects chloroplast development from heat stress via a TRX-FLN regulatory module in rice
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	development	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Expression levels of PEP-encoded genes, chloroplast development genes and photosynthesis-related genes were compromised in wlp2 mutants, indicating that WLP2 is essential for normal chloroplast biogenesis
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	development	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Our results strongly indicate that WLP2 protects chloroplast development from heat stress via a TRX-FLN regulatory module in rice
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	map-based cloning	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Map-based cloning suggested that WLP2 encodes a putative pfkB-type carbohydrate kinase family protein, which is homologous to fructokinase-like 1 (AtFLN1) in Arabidopsis
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	stress	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Moreover, WLP2 and its paralog OsFLN2 can physically interact with thioredoxin OsTRXz to form a TRX-FLN regulatory module, which not only regulates transcription of the PEP-encoded genes but also maintains the redox balance in chloroplasts under heat stress
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	stress	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Our results strongly indicate that WLP2 protects chloroplast development from heat stress via a TRX-FLN regulatory module in rice
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	Kinase	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Map-based cloning suggested that WLP2 encodes a putative pfkB-type carbohydrate kinase family protein, which is homologous to fructokinase-like 1 (AtFLN1) in Arabidopsis
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	chloroplast development	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Expression levels of PEP-encoded genes, chloroplast development genes and photosynthesis-related genes were compromised in wlp2 mutants, indicating that WLP2 is essential for normal chloroplast biogenesis
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	chloroplast development	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	Our results strongly indicate that WLP2 protects chloroplast development from heat stress via a TRX-FLN regulatory module in rice
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	chloroplast	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	Moreover, OsFLN1 localizes to the chloroplast
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	chloroplast	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	Yeast two-hybrid, pull-down and bimolecular fluorescence complementation experiments revealed that OsFLN1 and HSA1/OsFLN2 interact with THIOREDOXINZ (OsTRXz) to regulate chloroplast development
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	chloroplast	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	These results show that OsFLN1 and HSA1/OsFLN2 contribute to chloroplast biogenesis and plant growth
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	growth	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	These results show that OsFLN1 and HSA1/OsFLN2 contribute to chloroplast biogenesis and plant growth
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	development	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	Yeast two-hybrid, pull-down and bimolecular fluorescence complementation experiments revealed that OsFLN1 and HSA1/OsFLN2 interact with THIOREDOXINZ (OsTRXz) to regulate chloroplast development
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	chloroplast development	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	Yeast two-hybrid, pull-down and bimolecular fluorescence complementation experiments revealed that OsFLN1 and HSA1/OsFLN2 interact with THIOREDOXINZ (OsTRXz) to regulate chloroplast development
WLP2|OsFLN1	Os01g0851000	LOC_Os01g63220	plant growth	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	These results show that OsFLN1 and HSA1/OsFLN2 contribute to chloroplast biogenesis and plant growth
WLS5	None	LOC_Os05g04900	leaf	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.
WLS5	None	LOC_Os05g04900	leaf	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Knockout of LOC_Os05g04900 in Nipponbare plants caused leaf senescence, confirming this locus as the causal gene for WLS5
WLS5	None	LOC_Os05g04900	leaf	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Further molecular study of WLS5 will uncover the roles of this gene in plant growth and leaf senescence
WLS5	None	LOC_Os05g04900	leaf senescence	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.
WLS5	None	LOC_Os05g04900	leaf senescence	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Knockout of LOC_Os05g04900 in Nipponbare plants caused leaf senescence, confirming this locus as the causal gene for WLS5
WLS5	None	LOC_Os05g04900	leaf senescence	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Further molecular study of WLS5 will uncover the roles of this gene in plant growth and leaf senescence
WLS5	None	LOC_Os05g04900	early leaf senescence	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.
WLS5	None	LOC_Os05g04900	senescence	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.
WLS5	None	LOC_Os05g04900	senescence	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Further molecular study of WLS5 will uncover the roles of this gene in plant growth and leaf senescence
WLS5	None	LOC_Os05g04900	growth	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.
WLS5	None	LOC_Os05g04900	growth	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Histological analysis showed that the poor growth of wls5 plants involved a reduction in cell length and number
WLS5	None	LOC_Os05g04900	growth	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Further molecular study of WLS5 will uncover the roles of this gene in plant growth and leaf senescence
WLS5	None	LOC_Os05g04900	stomatal	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	The wls5 mutants also exhibited significantly higher stomatal density and altered phytohormone contents compared with wild-type plants
WLS5	None	LOC_Os05g04900	phytohormone	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	The wls5 mutants also exhibited significantly higher stomatal density and altered phytohormone contents compared with wild-type plants
WLS5	None	LOC_Os05g04900	reactive oxygen species	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Physiological analysis and transmission electron microscopy revealed that the wls5 cells had abnormal chloroplasts, and the mutants underwent chlorophyll degradation triggered by accumulation of reactive oxygen species
WLS5	None	LOC_Os05g04900	plant growth	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Further molecular study of WLS5 will uncover the roles of this gene in plant growth and leaf senescence
WOX11	Os07g0684900	LOC_Os07g48560	shoot	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	flower	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Quantitative polymerase chain reaction (PCR) results showed that expression levels of WUSCHEL-related Homeobox (WOX) gene, WOX11, and some flowering regulators were promoted in the OsMADS15 overexpression transgenic plants, indicating that OsMADS15 had a wide range of regulations
WOX11	Os07g0684900	LOC_Os07g48560	growth	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	In this work, we show that a WUSCHEL-related Homeobox (WOX) gene, WOX11, is involved in the activation of crown root emergence and growth
WOX11	Os07g0684900	LOC_Os07g48560	auxin	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The expressions of auxin- and cytokinin-responsive genes were affected in WOX11 overexpression and RNA interference transgenic plants
WOX11	Os07g0684900	LOC_Os07g48560	auxin	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The results suggest that WOX11 may be an integrator of auxin and cytokinin signaling that feeds into RR2 to regulate cell proliferation during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	In this work, we show that a WUSCHEL-related Homeobox (WOX) gene, WOX11, is involved in the activation of crown root emergence and growth
WOX11	Os07g0684900	LOC_Os07g48560	root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	WOX11 was found to be expressed in emerging crown roots and later in cell division regions of the root meristem
WOX11	Os07g0684900	LOC_Os07g48560	root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	Further analysis showed that WOX11 directly repressed RR2, a type-A cytokinin-responsive regulator gene that was found to be expressed in crown root primordia
WOX11	Os07g0684900	LOC_Os07g48560	root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The results suggest that WOX11 may be an integrator of auxin and cytokinin signaling that feeds into RR2 to regulate cell proliferation during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	crown	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	In this work, we show that a WUSCHEL-related Homeobox (WOX) gene, WOX11, is involved in the activation of crown root emergence and growth
WOX11	Os07g0684900	LOC_Os07g48560	crown	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	WOX11 was found to be expressed in emerging crown roots and later in cell division regions of the root meristem
WOX11	Os07g0684900	LOC_Os07g48560	crown	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	Further analysis showed that WOX11 directly repressed RR2, a type-A cytokinin-responsive regulator gene that was found to be expressed in crown root primordia
WOX11	Os07g0684900	LOC_Os07g48560	crown	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The results suggest that WOX11 may be an integrator of auxin and cytokinin signaling that feeds into RR2 to regulate cell proliferation during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	crown	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	cytokinin	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The expressions of auxin- and cytokinin-responsive genes were affected in WOX11 overexpression and RNA interference transgenic plants
WOX11	Os07g0684900	LOC_Os07g48560	cytokinin	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	Further analysis showed that WOX11 directly repressed RR2, a type-A cytokinin-responsive regulator gene that was found to be expressed in crown root primordia
WOX11	Os07g0684900	LOC_Os07g48560	cytokinin	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The results suggest that WOX11 may be an integrator of auxin and cytokinin signaling that feeds into RR2 to regulate cell proliferation during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	root development	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The results suggest that WOX11 may be an integrator of auxin and cytokinin signaling that feeds into RR2 to regulate cell proliferation during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	root development	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	In this work, we show that a WUSCHEL-related Homeobox (WOX) gene, WOX11, is involved in the activation of crown root emergence and growth
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	WOX11 was found to be expressed in emerging crown roots and later in cell division regions of the root meristem
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	Further analysis showed that WOX11 directly repressed RR2, a type-A cytokinin-responsive regulator gene that was found to be expressed in crown root primordia
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The results suggest that WOX11 may be an integrator of auxin and cytokinin signaling that feeds into RR2 to regulate cell proliferation during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	cell division	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	WOX11 was found to be expressed in emerging crown roots and later in cell division regions of the root meristem
WOX11	Os07g0684900	LOC_Os07g48560	meristem	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice	WOX11 was found to be expressed in emerging crown roots and later in cell division regions of the root meristem
WOX11	Os07g0684900	LOC_Os07g48560	root	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	Here, we report that ectopic expression of WOX11 gene driven by the promoter of OsHAK16 encoding a low-K-enhanced K transporter led to an extensive root system and adventitious roots and more effective tiller numbers in rice
WOX11	Os07g0684900	LOC_Os07g48560	root	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	The results suggest that enlarging root growth and development by the expression of WOX11 in roots could provide a useful option for increasing K acquisition efficiency and cereal crop productivity in low K soil
WOX11	Os07g0684900	LOC_Os07g48560	growth	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	The results suggest that enlarging root growth and development by the expression of WOX11 in roots could provide a useful option for increasing K acquisition efficiency and cereal crop productivity in low K soil
WOX11	Os07g0684900	LOC_Os07g48560	tiller	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	Here, we report that ectopic expression of WOX11 gene driven by the promoter of OsHAK16 encoding a low-K-enhanced K transporter led to an extensive root system and adventitious roots and more effective tiller numbers in rice
WOX11	Os07g0684900	LOC_Os07g48560	transporter	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	Here, we report that ectopic expression of WOX11 gene driven by the promoter of OsHAK16 encoding a low-K-enhanced K transporter led to an extensive root system and adventitious roots and more effective tiller numbers in rice
WOX11	Os07g0684900	LOC_Os07g48560	adventitious root	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	Here, we report that ectopic expression of WOX11 gene driven by the promoter of OsHAK16 encoding a low-K-enhanced K transporter led to an extensive root system and adventitious roots and more effective tiller numbers in rice
WOX11	Os07g0684900	LOC_Os07g48560	tiller number	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	Here, we report that ectopic expression of WOX11 gene driven by the promoter of OsHAK16 encoding a low-K-enhanced K transporter led to an extensive root system and adventitious roots and more effective tiller numbers in rice
WOX11	Os07g0684900	LOC_Os07g48560	development	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	The results suggest that enlarging root growth and development by the expression of WOX11 in roots could provide a useful option for increasing K acquisition efficiency and cereal crop productivity in low K soil
WOX11	Os07g0684900	LOC_Os07g48560	root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
WOX11	Os07g0684900	LOC_Os07g48560	root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	However, the nature of WOX11 function in crown root development has remained elusive
WOX11	Os07g0684900	LOC_Os07g48560	root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	Here, we identified a rice AP2/ERF protein, ERF3, which interacts with WOX11 and was expressed in crown root initials and during crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	Downregulation of ERF3 in wox11 mutants produced a more severe root phenotype
WOX11	Os07g0684900	LOC_Os07g48560	root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The expression of ERF3 and WOX11 only partially overlapped, underlining a spatio-temporal control of RR2 expression and crown root development
WOX11	Os07g0684900	LOC_Os07g48560	growth	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	Here, we identified a rice AP2/ERF protein, ERF3, which interacts with WOX11 and was expressed in crown root initials and during crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
WOX11	Os07g0684900	LOC_Os07g48560	development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	However, the nature of WOX11 function in crown root development has remained elusive
WOX11	Os07g0684900	LOC_Os07g48560	development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The expression of ERF3 and WOX11 only partially overlapped, underlining a spatio-temporal control of RR2 expression and crown root development
WOX11	Os07g0684900	LOC_Os07g48560	cytokinin	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
WOX11	Os07g0684900	LOC_Os07g48560	crown	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
WOX11	Os07g0684900	LOC_Os07g48560	crown	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	However, the nature of WOX11 function in crown root development has remained elusive
WOX11	Os07g0684900	LOC_Os07g48560	crown	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	Here, we identified a rice AP2/ERF protein, ERF3, which interacts with WOX11 and was expressed in crown root initials and during crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	crown	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The expression of ERF3 and WOX11 only partially overlapped, underlining a spatio-temporal control of RR2 expression and crown root development
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	However, the nature of WOX11 function in crown root development has remained elusive
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	Here, we identified a rice AP2/ERF protein, ERF3, which interacts with WOX11 and was expressed in crown root initials and during crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The expression of ERF3 and WOX11 only partially overlapped, underlining a spatio-temporal control of RR2 expression and crown root development
WOX11	Os07g0684900	LOC_Os07g48560	root development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
WOX11	Os07g0684900	LOC_Os07g48560	root development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	However, the nature of WOX11 function in crown root development has remained elusive
WOX11	Os07g0684900	LOC_Os07g48560	root development	The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	The expression of ERF3 and WOX11 only partially overlapped, underlining a spatio-temporal control of RR2 expression and crown root development
WOX11	Os07g0684900	LOC_Os07g48560	root	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.
WOX11	Os07g0684900	LOC_Os07g48560	root	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	In this study, we further analyzed the root phenotypes of WOX11 transgenic plants and revealed that WOX11 also actes in controlling root hair development and enhancing rice drought resistance, in addition to its roles in regulating crown root and lateral root development
WOX11	Os07g0684900	LOC_Os07g48560	root	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	Based on this new finding, we proposed the mechanism of that WOX11 is involved in drought resistance by modulating rice root system development
WOX11	Os07g0684900	LOC_Os07g48560	resistance	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.
WOX11	Os07g0684900	LOC_Os07g48560	resistance	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	Based on this new finding, we proposed the mechanism of that WOX11 is involved in drought resistance by modulating rice root system development
WOX11	Os07g0684900	LOC_Os07g48560	development	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	In this study, we further analyzed the root phenotypes of WOX11 transgenic plants and revealed that WOX11 also actes in controlling root hair development and enhancing rice drought resistance, in addition to its roles in regulating crown root and lateral root development
WOX11	Os07g0684900	LOC_Os07g48560	development	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	Based on this new finding, we proposed the mechanism of that WOX11 is involved in drought resistance by modulating rice root system development
WOX11	Os07g0684900	LOC_Os07g48560	drought	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.
WOX11	Os07g0684900	LOC_Os07g48560	drought	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	In this study, we further analyzed the root phenotypes of WOX11 transgenic plants and revealed that WOX11 also actes in controlling root hair development and enhancing rice drought resistance, in addition to its roles in regulating crown root and lateral root development
WOX11	Os07g0684900	LOC_Os07g48560	drought	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	Based on this new finding, we proposed the mechanism of that WOX11 is involved in drought resistance by modulating rice root system development
WOX11	Os07g0684900	LOC_Os07g48560	root development	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	In this study, we further analyzed the root phenotypes of WOX11 transgenic plants and revealed that WOX11 also actes in controlling root hair development and enhancing rice drought resistance, in addition to its roles in regulating crown root and lateral root development
WOX11	Os07g0684900	LOC_Os07g48560	lateral root	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	In this study, we further analyzed the root phenotypes of WOX11 transgenic plants and revealed that WOX11 also actes in controlling root hair development and enhancing rice drought resistance, in addition to its roles in regulating crown root and lateral root development
WOX11	Os07g0684900	LOC_Os07g48560	crown	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	In this study, we further analyzed the root phenotypes of WOX11 transgenic plants and revealed that WOX11 also actes in controlling root hair development and enhancing rice drought resistance, in addition to its roles in regulating crown root and lateral root development
WOX11	Os07g0684900	LOC_Os07g48560	crown root	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	In this study, we further analyzed the root phenotypes of WOX11 transgenic plants and revealed that WOX11 also actes in controlling root hair development and enhancing rice drought resistance, in addition to its roles in regulating crown root and lateral root development
WOX11	Os07g0684900	LOC_Os07g48560	drought resistance	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.
WOX11	Os07g0684900	LOC_Os07g48560	drought resistance	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	In this study, we further analyzed the root phenotypes of WOX11 transgenic plants and revealed that WOX11 also actes in controlling root hair development and enhancing rice drought resistance, in addition to its roles in regulating crown root and lateral root development
WOX11	Os07g0684900	LOC_Os07g48560	drought resistance	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	Based on this new finding, we proposed the mechanism of that WOX11 is involved in drought resistance by modulating rice root system development
WOX11	Os07g0684900	LOC_Os07g48560	root hair	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.
WOX11	Os07g0684900	LOC_Os07g48560	root hair	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	In this study, we further analyzed the root phenotypes of WOX11 transgenic plants and revealed that WOX11 also actes in controlling root hair development and enhancing rice drought resistance, in addition to its roles in regulating crown root and lateral root development
WOX11	Os07g0684900	LOC_Os07g48560	homeobox gene	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.
WOX11	Os07g0684900	LOC_Os07g48560	root	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.
WOX11	Os07g0684900	LOC_Os07g48560	root	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 Previous work has shown that the Wuschel-related homeobox gene WOX11 is necessary and sufficient to promote rice (Oryza sativa) crown root emergence and elongation
WOX11	Os07g0684900	LOC_Os07g48560	root	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 Here, we show that WOX11 recruits the ADA2-GCN5 histone acetyltransferase (HAT) module to activate downstream target genes in crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	root	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 WOX11 and ADA2-GCN5 commonly target and regulate a set of root-specific genes involved in energy metabolism, cell wall biosynthesis, and hormone response, some of which are known to be important for root development
WOX11	Os07g0684900	LOC_Os07g48560	root	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 The results indicate that the recruitment of ADA2-GCN5 by WOX11 establishes gene expression programs of crown root meristem cell division and suggest that permissive chromatin modification involving histone acetylation is a strategy for WOX11 to stimulate root meristem development
WOX11	Os07g0684900	LOC_Os07g48560	development	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 WOX11 and ADA2-GCN5 commonly target and regulate a set of root-specific genes involved in energy metabolism, cell wall biosynthesis, and hormone response, some of which are known to be important for root development
WOX11	Os07g0684900	LOC_Os07g48560	development	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 The results indicate that the recruitment of ADA2-GCN5 by WOX11 establishes gene expression programs of crown root meristem cell division and suggest that permissive chromatin modification involving histone acetylation is a strategy for WOX11 to stimulate root meristem development
WOX11	Os07g0684900	LOC_Os07g48560	cell division	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 The results indicate that the recruitment of ADA2-GCN5 by WOX11 establishes gene expression programs of crown root meristem cell division and suggest that permissive chromatin modification involving histone acetylation is a strategy for WOX11 to stimulate root meristem development
WOX11	Os07g0684900	LOC_Os07g48560	root development	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 WOX11 and ADA2-GCN5 commonly target and regulate a set of root-specific genes involved in energy metabolism, cell wall biosynthesis, and hormone response, some of which are known to be important for root development
WOX11	Os07g0684900	LOC_Os07g48560	meristem	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 Here, we show that WOX11 recruits the ADA2-GCN5 histone acetyltransferase (HAT) module to activate downstream target genes in crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	meristem	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 The results indicate that the recruitment of ADA2-GCN5 by WOX11 establishes gene expression programs of crown root meristem cell division and suggest that permissive chromatin modification involving histone acetylation is a strategy for WOX11 to stimulate root meristem development
WOX11	Os07g0684900	LOC_Os07g48560	cell wall	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 WOX11 and ADA2-GCN5 commonly target and regulate a set of root-specific genes involved in energy metabolism, cell wall biosynthesis, and hormone response, some of which are known to be important for root development
WOX11	Os07g0684900	LOC_Os07g48560	crown	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.
WOX11	Os07g0684900	LOC_Os07g48560	crown	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 Previous work has shown that the Wuschel-related homeobox gene WOX11 is necessary and sufficient to promote rice (Oryza sativa) crown root emergence and elongation
WOX11	Os07g0684900	LOC_Os07g48560	crown	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 Here, we show that WOX11 recruits the ADA2-GCN5 histone acetyltransferase (HAT) module to activate downstream target genes in crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	crown	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 The results indicate that the recruitment of ADA2-GCN5 by WOX11 establishes gene expression programs of crown root meristem cell division and suggest that permissive chromatin modification involving histone acetylation is a strategy for WOX11 to stimulate root meristem development
WOX11	Os07g0684900	LOC_Os07g48560	crown root	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.
WOX11	Os07g0684900	LOC_Os07g48560	crown root	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 Previous work has shown that the Wuschel-related homeobox gene WOX11 is necessary and sufficient to promote rice (Oryza sativa) crown root emergence and elongation
WOX11	Os07g0684900	LOC_Os07g48560	crown root	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 Here, we show that WOX11 recruits the ADA2-GCN5 histone acetyltransferase (HAT) module to activate downstream target genes in crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	crown root	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 The results indicate that the recruitment of ADA2-GCN5 by WOX11 establishes gene expression programs of crown root meristem cell division and suggest that permissive chromatin modification involving histone acetylation is a strategy for WOX11 to stimulate root meristem development
WOX11	Os07g0684900	LOC_Os07g48560	cell proliferation	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.
WOX11	Os07g0684900	LOC_Os07g48560	root meristem	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.
WOX11	Os07g0684900	LOC_Os07g48560	root meristem	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 Here, we show that WOX11 recruits the ADA2-GCN5 histone acetyltransferase (HAT) module to activate downstream target genes in crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	root meristem	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 The results indicate that the recruitment of ADA2-GCN5 by WOX11 establishes gene expression programs of crown root meristem cell division and suggest that permissive chromatin modification involving histone acetylation is a strategy for WOX11 to stimulate root meristem development
WOX11	Os07g0684900	LOC_Os07g48560	homeobox gene	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.	 Previous work has shown that the Wuschel-related homeobox gene WOX11 is necessary and sufficient to promote rice (Oryza sativa) crown root emergence and elongation
WOX11	Os07g0684900	LOC_Os07g48560	root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.
WOX11	Os07g0684900	LOC_Os07g48560	root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 Here, we studied the transcriptome of wox11 root tips by RNA-Seq and determined direct WOX11-binding targets by bioinformatic and biochemical analysis
WOX11	Os07g0684900	LOC_Os07g48560	root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 The analysis identified several genes that acted downstream of WOX11 in controlling crown root formation, cytokinin signaling, stress response, and redox metabolism
WOX11	Os07g0684900	LOC_Os07g48560	root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 This work built a hierarchical regulatory model of WOX11 in rice crown root development
WOX11	Os07g0684900	LOC_Os07g48560	development	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 This work built a hierarchical regulatory model of WOX11 in rice crown root development
WOX11	Os07g0684900	LOC_Os07g48560	abiotic stress	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	crown root development	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.
WOX11	Os07g0684900	LOC_Os07g48560	crown root development	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	crown root development	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 This work built a hierarchical regulatory model of WOX11 in rice crown root development
WOX11	Os07g0684900	LOC_Os07g48560	root development	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.
WOX11	Os07g0684900	LOC_Os07g48560	root development	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	root development	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 This work built a hierarchical regulatory model of WOX11 in rice crown root development
WOX11	Os07g0684900	LOC_Os07g48560	cytokinin	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.
WOX11	Os07g0684900	LOC_Os07g48560	cytokinin	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 The analysis identified several genes that acted downstream of WOX11 in controlling crown root formation, cytokinin signaling, stress response, and redox metabolism
WOX11	Os07g0684900	LOC_Os07g48560	root initiation	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	stress	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 The analysis identified several genes that acted downstream of WOX11 in controlling crown root formation, cytokinin signaling, stress response, and redox metabolism
WOX11	Os07g0684900	LOC_Os07g48560	crown	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.
WOX11	Os07g0684900	LOC_Os07g48560	crown	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	crown	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 The analysis identified several genes that acted downstream of WOX11 in controlling crown root formation, cytokinin signaling, stress response, and redox metabolism
WOX11	Os07g0684900	LOC_Os07g48560	crown	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 This work built a hierarchical regulatory model of WOX11 in rice crown root development
WOX11	Os07g0684900	LOC_Os07g48560	crown root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.
WOX11	Os07g0684900	LOC_Os07g48560	crown root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	crown root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 The analysis identified several genes that acted downstream of WOX11 in controlling crown root formation, cytokinin signaling, stress response, and redox metabolism
WOX11	Os07g0684900	LOC_Os07g48560	crown root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 This work built a hierarchical regulatory model of WOX11 in rice crown root development
WOX11	Os07g0684900	LOC_Os07g48560	lateral root	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	biotic stress	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	transcriptional regulator	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.
WOX11	Os07g0684900	LOC_Os07g48560	stress response	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 The analysis identified several genes that acted downstream of WOX11 in controlling crown root formation, cytokinin signaling, stress response, and redox metabolism
WOX11	Os07g0684900	LOC_Os07g48560	root hair	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	 In addition to specifically activating crown root development, WOX11 is also involved in lateral root initiation, root hair formation, and abiotic stresses
WOX11	Os07g0684900	LOC_Os07g48560	transcription factor	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 The results suggest that recruitment of JMJ705 to specific developmental pathway genes is promoted by DNA-binding transcription factors and that WOX11 functions to stimulate shoot growth through epigenetic reprogramming of genes involved in meristem development and energy-generating pathways
WOX11	Os07g0684900	LOC_Os07g48560	chloroplast	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 Genetic analysis indicates that WOX11 and JMJ705 cooperatively control shoot growth and commonly regulate the expression of a set of genes involved in meristem identity, chloroplast biogenesis, and energy metabolism in the shoot apex
WOX11	Os07g0684900	LOC_Os07g48560	growth	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 Genetic analysis indicates that WOX11 and JMJ705 cooperatively control shoot growth and commonly regulate the expression of a set of genes involved in meristem identity, chloroplast biogenesis, and energy metabolism in the shoot apex
WOX11	Os07g0684900	LOC_Os07g48560	growth	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 The results suggest that recruitment of JMJ705 to specific developmental pathway genes is promoted by DNA-binding transcription factors and that WOX11 functions to stimulate shoot growth through epigenetic reprogramming of genes involved in meristem development and energy-generating pathways
WOX11	Os07g0684900	LOC_Os07g48560	shoot	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.
WOX11	Os07g0684900	LOC_Os07g48560	shoot	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 Here, we show that WOX11 interacts with the H3K27me3 demethylase JMJ705 to activate gene expression during shoot development in rice
WOX11	Os07g0684900	LOC_Os07g48560	shoot	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 Genetic analysis indicates that WOX11 and JMJ705 cooperatively control shoot growth and commonly regulate the expression of a set of genes involved in meristem identity, chloroplast biogenesis, and energy metabolism in the shoot apex
WOX11	Os07g0684900	LOC_Os07g48560	shoot	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 The results suggest that recruitment of JMJ705 to specific developmental pathway genes is promoted by DNA-binding transcription factors and that WOX11 functions to stimulate shoot growth through epigenetic reprogramming of genes involved in meristem development and energy-generating pathways
WOX11	Os07g0684900	LOC_Os07g48560	development	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.
WOX11	Os07g0684900	LOC_Os07g48560	development	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 Here, we show that WOX11 interacts with the H3K27me3 demethylase JMJ705 to activate gene expression during shoot development in rice
WOX11	Os07g0684900	LOC_Os07g48560	development	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 The results suggest that recruitment of JMJ705 to specific developmental pathway genes is promoted by DNA-binding transcription factors and that WOX11 functions to stimulate shoot growth through epigenetic reprogramming of genes involved in meristem development and energy-generating pathways
WOX11	Os07g0684900	LOC_Os07g48560	meristem	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 Genetic analysis indicates that WOX11 and JMJ705 cooperatively control shoot growth and commonly regulate the expression of a set of genes involved in meristem identity, chloroplast biogenesis, and energy metabolism in the shoot apex
WOX11	Os07g0684900	LOC_Os07g48560	meristem	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	 The results suggest that recruitment of JMJ705 to specific developmental pathway genes is promoted by DNA-binding transcription factors and that WOX11 functions to stimulate shoot growth through epigenetic reprogramming of genes involved in meristem development and energy-generating pathways
WOX11	Os07g0684900	LOC_Os07g48560	transcription factor	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 We find that YUC overexpression-induced crown root proliferation requires the presence of the transcription factor WOX11
WOX11	Os07g0684900	LOC_Os07g48560	root	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 We find that YUC overexpression-induced crown root proliferation requires the presence of the transcription factor WOX11
WOX11	Os07g0684900	LOC_Os07g48560	root	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Auxin activates WOX11 transcription, which subsequently drives crown root initiation and development, establishing the YUC-Auxin-WOX11 module for crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	development	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Auxin activates WOX11 transcription, which subsequently drives crown root initiation and development, establishing the YUC-Auxin-WOX11 module for crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	crown root development	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Auxin activates WOX11 transcription, which subsequently drives crown root initiation and development, establishing the YUC-Auxin-WOX11 module for crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	root development	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Auxin activates WOX11 transcription, which subsequently drives crown root initiation and development, establishing the YUC-Auxin-WOX11 module for crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	auxin	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Auxin activates WOX11 transcription, which subsequently drives crown root initiation and development, establishing the YUC-Auxin-WOX11 module for crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	crown root initiation	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Auxin activates WOX11 transcription, which subsequently drives crown root initiation and development, establishing the YUC-Auxin-WOX11 module for crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	root initiation	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Auxin activates WOX11 transcription, which subsequently drives crown root initiation and development, establishing the YUC-Auxin-WOX11 module for crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	crown	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 We find that YUC overexpression-induced crown root proliferation requires the presence of the transcription factor WOX11
WOX11	Os07g0684900	LOC_Os07g48560	crown	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Moreover, the crown rootless phenotype of taa1 mutants was partially rescued by overexpression of WOX11
WOX11	Os07g0684900	LOC_Os07g48560	crown	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Auxin activates WOX11 transcription, which subsequently drives crown root initiation and development, establishing the YUC-Auxin-WOX11 module for crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 We find that YUC overexpression-induced crown root proliferation requires the presence of the transcription factor WOX11
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Moreover, the crown rootless phenotype of taa1 mutants was partially rescued by overexpression of WOX11
WOX11	Os07g0684900	LOC_Os07g48560	crown root	The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.	 Auxin activates WOX11 transcription, which subsequently drives crown root initiation and development, establishing the YUC-Auxin-WOX11 module for crown root development in rice
WOX11	Os07g0684900	LOC_Os07g48560	root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.
WOX11	Os07g0684900	LOC_Os07g48560	root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 As an important regulator of rice crown root development, WOX11 is essential for crown root formation and its transcript level is positively correlated with crown roots biomass
WOX11	Os07g0684900	LOC_Os07g48560	root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 However, how WOX11 is regulated during crown root primordium emergence and outgrowth still remains unknown
WOX11	Os07g0684900	LOC_Os07g48560	root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 Furthermore, pWOX11(ncMITE+):WOX11-FLAG in wox11 background could complement crown root number and length compared to those of wild type (WT), while pWOX11(ncMITE-):WOX11-FLAG could not
WOX11	Os07g0684900	LOC_Os07g48560	root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 This work provides novel insight into WOX11 expression regulation and reveals a promising target for genetic improvement of root architecture in rice
WOX11	Os07g0684900	LOC_Os07g48560	crown root development	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 As an important regulator of rice crown root development, WOX11 is essential for crown root formation and its transcript level is positively correlated with crown roots biomass
WOX11	Os07g0684900	LOC_Os07g48560	root development	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 As an important regulator of rice crown root development, WOX11 is essential for crown root formation and its transcript level is positively correlated with crown roots biomass
WOX11	Os07g0684900	LOC_Os07g48560	architecture	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 This work provides novel insight into WOX11 expression regulation and reveals a promising target for genetic improvement of root architecture in rice
WOX11	Os07g0684900	LOC_Os07g48560	biomass	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 As an important regulator of rice crown root development, WOX11 is essential for crown root formation and its transcript level is positively correlated with crown roots biomass
WOX11	Os07g0684900	LOC_Os07g48560	crown	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.
WOX11	Os07g0684900	LOC_Os07g48560	crown	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 As an important regulator of rice crown root development, WOX11 is essential for crown root formation and its transcript level is positively correlated with crown roots biomass
WOX11	Os07g0684900	LOC_Os07g48560	crown	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 However, how WOX11 is regulated during crown root primordium emergence and outgrowth still remains unknown
WOX11	Os07g0684900	LOC_Os07g48560	crown	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 Analysis of WOX11 promoter driven reporter gene GUS (β-glucuronidase) transgenic plants pWOX11(ncMITE+):GUS and pWOX11(ncMITE-):GUS uncovered higher GUS expression level in crown roots of pWOX11(ncMITE+):GUS plants
WOX11	Os07g0684900	LOC_Os07g48560	crown	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 Furthermore, pWOX11(ncMITE+):WOX11-FLAG in wox11 background could complement crown root number and length compared to those of wild type (WT), while pWOX11(ncMITE-):WOX11-FLAG could not
WOX11	Os07g0684900	LOC_Os07g48560	crown	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 These results suggested that the ncMITE was positively associated WOX11 transcripts in rice crown roots
WOX11	Os07g0684900	LOC_Os07g48560	crown root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.
WOX11	Os07g0684900	LOC_Os07g48560	crown root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 As an important regulator of rice crown root development, WOX11 is essential for crown root formation and its transcript level is positively correlated with crown roots biomass
WOX11	Os07g0684900	LOC_Os07g48560	crown root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 However, how WOX11 is regulated during crown root primordium emergence and outgrowth still remains unknown
WOX11	Os07g0684900	LOC_Os07g48560	crown root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 Analysis of WOX11 promoter driven reporter gene GUS (β-glucuronidase) transgenic plants pWOX11(ncMITE+):GUS and pWOX11(ncMITE-):GUS uncovered higher GUS expression level in crown roots of pWOX11(ncMITE+):GUS plants
WOX11	Os07g0684900	LOC_Os07g48560	crown root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 Furthermore, pWOX11(ncMITE+):WOX11-FLAG in wox11 background could complement crown root number and length compared to those of wild type (WT), while pWOX11(ncMITE-):WOX11-FLAG could not
WOX11	Os07g0684900	LOC_Os07g48560	crown root	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 These results suggested that the ncMITE was positively associated WOX11 transcripts in rice crown roots
WOX11	Os07g0684900	LOC_Os07g48560	root architecture	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 This work provides novel insight into WOX11 expression regulation and reveals a promising target for genetic improvement of root architecture in rice
WOX11	Os07g0684900	LOC_Os07g48560	root number	A Non-canonical MITE in WOX11 Promoter is Associated With Robust Crown Root in Rice.	 Furthermore, pWOX11(ncMITE+):WOX11-FLAG in wox11 background could complement crown root number and length compared to those of wild type (WT), while pWOX11(ncMITE-):WOX11-FLAG could not
WOX11	Os07g0684900	LOC_Os07g48560	root	ROS-stimulated protein lysine acetylation is required for crown root development in rice.	 RESULTS: We demonstrated that WOX11 was required to maintain ROS homeostasis by upregulating peroxidase genes in the crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	potassium	ROS-stimulated protein lysine acetylation is required for crown root development in rice.	 Finally, acetylproteomic analysis of wild type and wox11 roots treated with or without potassium iodide (KI) and hydrogen peroxide (H(2)O(2)) was used to study the effects of ROS on protein acetylation in rice CR cells
WOX11	Os07g0684900	LOC_Os07g48560	meristem	ROS-stimulated protein lysine acetylation is required for crown root development in rice.	 RESULTS: We demonstrated that WOX11 was required to maintain ROS homeostasis by upregulating peroxidase genes in the crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	homeostasis	ROS-stimulated protein lysine acetylation is required for crown root development in rice.	 RESULTS: We demonstrated that WOX11 was required to maintain ROS homeostasis by upregulating peroxidase genes in the crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	crown	ROS-stimulated protein lysine acetylation is required for crown root development in rice.	 RESULTS: We demonstrated that WOX11 was required to maintain ROS homeostasis by upregulating peroxidase genes in the crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	crown root	ROS-stimulated protein lysine acetylation is required for crown root development in rice.	 RESULTS: We demonstrated that WOX11 was required to maintain ROS homeostasis by upregulating peroxidase genes in the crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	root meristem	ROS-stimulated protein lysine acetylation is required for crown root development in rice.	 RESULTS: We demonstrated that WOX11 was required to maintain ROS homeostasis by upregulating peroxidase genes in the crown root meristem
WOX11	Os07g0684900	LOC_Os07g48560	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
WOX11	Os07g0684900	LOC_Os07g48560	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 CRL1 enhances OsCKX4 activation through direct interaction with WOX11 at root emergence and elongation stages
WOX11	Os07g0684900	LOC_Os07g48560	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Increased expression of OsCKX4 could partially complement the crown root phenotypes of both crl1 and wox11 mutants
WOX11	Os07g0684900	LOC_Os07g48560	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Furthermore, cytokinin can promote WOX11 protein accumulation in root meristem
WOX11	Os07g0684900	LOC_Os07g48560	root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Importantly, these results reveal an intrinsic link between WOX11 protein accumulation and cytokinin to maintain crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	growth	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Importantly, these results reveal an intrinsic link between WOX11 protein accumulation and cytokinin to maintain crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
WOX11	Os07g0684900	LOC_Os07g48560	development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	crown root development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
WOX11	Os07g0684900	LOC_Os07g48560	crown root development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	root development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
WOX11	Os07g0684900	LOC_Os07g48560	root development	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	cytokinin	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
WOX11	Os07g0684900	LOC_Os07g48560	cytokinin	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Furthermore, cytokinin can promote WOX11 protein accumulation in root meristem
WOX11	Os07g0684900	LOC_Os07g48560	cytokinin	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Importantly, these results reveal an intrinsic link between WOX11 protein accumulation and cytokinin to maintain crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	meristem	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Furthermore, cytokinin can promote WOX11 protein accumulation in root meristem
WOX11	Os07g0684900	LOC_Os07g48560	homeostasis	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
WOX11	Os07g0684900	LOC_Os07g48560	root growth	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Importantly, these results reveal an intrinsic link between WOX11 protein accumulation and cytokinin to maintain crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	crown	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
WOX11	Os07g0684900	LOC_Os07g48560	crown	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	crown	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Increased expression of OsCKX4 could partially complement the crown root phenotypes of both crl1 and wox11 mutants
WOX11	Os07g0684900	LOC_Os07g48560	crown	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Importantly, these results reveal an intrinsic link between WOX11 protein accumulation and cytokinin to maintain crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	crown root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.
WOX11	Os07g0684900	LOC_Os07g48560	crown root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Eletrophoretic mobility shift assays (EMSAs), transient expression and chromatin immunoprecipitation qPCR (ChIP-qPCR) suggested that WOX11 and CRL1 directly bind to OsCKX4 to regulate its expression during crown root development
WOX11	Os07g0684900	LOC_Os07g48560	crown root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Increased expression of OsCKX4 could partially complement the crown root phenotypes of both crl1 and wox11 mutants
WOX11	Os07g0684900	LOC_Os07g48560	crown root	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Importantly, these results reveal an intrinsic link between WOX11 protein accumulation and cytokinin to maintain crown root growth
WOX11	Os07g0684900	LOC_Os07g48560	root meristem	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	 Furthermore, cytokinin can promote WOX11 protein accumulation in root meristem
WOX11	Os07g0684900	LOC_Os07g48560	transcription factor	Transcription factor WOX11 regulates protein translation via ribosome protein acetylation in rice roots.	Transcription factor WOX11 regulates protein translation via ribosome protein acetylation in rice roots.
WOX11	Os07g0684900	LOC_Os07g48560	protein translation	Transcription factor WOX11 regulates protein translation via ribosome protein acetylation in rice roots.	Transcription factor WOX11 regulates protein translation via ribosome protein acetylation in rice roots.
WOX6	Os03g0325600	LOC_Os03g20910	tiller angle	A Core Regulatory Pathway Controlling Rice Tiller Angle Mediated by the LAZY1-Dependent Asymmetric Distribution of Auxin.	We also show that two functionally redundant transcription factor genes, WUSCHEL RELATED HOMEOBOX6 (WOX6) and WOX11, are expressed asymmetrically in response to auxin to connect gravitropism responses with the control of rice tiller angle.
WOX6	Os03g0325600	LOC_Os03g20910	auxin	A Core Regulatory Pathway Controlling Rice Tiller Angle Mediated by the LAZY1-Dependent Asymmetric Distribution of Auxin.	Subsequently, auxin induces the asymmetric expression of WUSCHEL RELATED HOMEOBOX6 (WOX6) and WOX11, two transcription factors that specify tiller angle.
WOX6	Os03g0325600	LOC_Os03g20910	tiller angle	A Core Regulatory Pathway Controlling Rice Tiller Angle Mediated by the LAZY1-Dependent Asymmetric Distribution of Auxin.	WOX6 and WOX11 Are Downstream Regulators of the LA1-Dependent Asymmetric Auxin Pathway to Control Tiller Angle
WOX6	Os03g0325600	LOC_Os03g20910	tiller angle	A Core Regulatory Pathway Controlling Rice Tiller Angle Mediated by the LAZY1-Dependent Asymmetric Distribution of Auxin.	These results show that WOX6 and WOX11 function downstream of auxin in responses to gravistimulation and act redundantly to control rice tiller angle.
WP1|OsValRS2	Os07g0163500	LOC_Os07g06940	chloroplast	WHITE PANICLE1, a Val-tRNA synthetase regulating chloroplast ribosome biogenesis in rice, is essential for early chloroplast development.	Chlorophyll autofluorescence observations and transmission electron microscopy analyses indicated that wp1 mutants are defective in early chloroplast development
WP1|OsValRS2	Os07g0163500	LOC_Os07g06940	chloroplast	WHITE PANICLE1, a Val-tRNA synthetase regulating chloroplast ribosome biogenesis in rice, is essential for early chloroplast development.	Western blot analyses of chloroplast-encoded proteins showed that wp1 mutants were defective in chloroplast protein synthesis, although transcription of some genes was higher in wp1 than in wild type
WP1|OsValRS2	Os07g0163500	LOC_Os07g06940	chloroplast	WHITE PANICLE1, a Val-tRNA synthetase regulating chloroplast ribosome biogenesis in rice, is essential for early chloroplast development.	We found that wp1 was impaired in chloroplast ribosome biogenesis
WP1|OsValRS2	Os07g0163500	LOC_Os07g06940	development	WHITE PANICLE1, a Val-tRNA synthetase regulating chloroplast ribosome biogenesis in rice, is essential for early chloroplast development.	Chlorophyll autofluorescence observations and transmission electron microscopy analyses indicated that wp1 mutants are defective in early chloroplast development
WP1|OsValRS2	Os07g0163500	LOC_Os07g06940	chloroplast development	WHITE PANICLE1, a Val-tRNA synthetase regulating chloroplast ribosome biogenesis in rice, is essential for early chloroplast development.	Chlorophyll autofluorescence observations and transmission electron microscopy analyses indicated that wp1 mutants are defective in early chloroplast development
WP3	Os01g0306650	LOC_Os01g20100	leaf	WHITE PANICLE3, a Novel Nucleus-Encoded Mitochondrial Protein, Is Essential for Proper Development and Maintenance of Chloroplasts and Mitochondria in Rice.	Interestingly, we demonstrate that the recessive white-panicle phenotype in the wp3 mutant is inherited in a typical Mendelian manner, while the white-striped leaf phenotype in wp3 is maternally inherited
WP3	Os01g0306650	LOC_Os01g20100	mitochondria	WHITE PANICLE3, a Novel Nucleus-Encoded Mitochondrial Protein, Is Essential for Proper Development and Maintenance of Chloroplasts and Mitochondria in Rice.	Further investigation showed that WP3 encodes a protein most likely targeted to mitochondria and is specifically expressed in rice panicles
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	growth	Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores.	In this study, we identify WRKY70 as a specific herbivore-induced, mitogen-activated protein kinase-regulated rice transcription factor that physically interacts with W-box motives and prioritizes defence over growth by positively regulating jasmonic acid (JA) and negatively regulating gibberellin (GA) biosynthesis upon attack by the chewing herbivore Chilo suppressalis
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	gibberellin	Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores.	In this study, we identify WRKY70 as a specific herbivore-induced, mitogen-activated protein kinase-regulated rice transcription factor that physically interacts with W-box motives and prioritizes defence over growth by positively regulating jasmonic acid (JA) and negatively regulating gibberellin (GA) biosynthesis upon attack by the chewing herbivore Chilo suppressalis
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	transcription factor	Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores.	In this study, we identify WRKY70 as a specific herbivore-induced, mitogen-activated protein kinase-regulated rice transcription factor that physically interacts with W-box motives and prioritizes defence over growth by positively regulating jasmonic acid (JA) and negatively regulating gibberellin (GA) biosynthesis upon attack by the chewing herbivore Chilo suppressalis
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	brown planthopper	Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores.	In contrast, WRKY70 induction increases plant susceptibility against the rice brown planthopper Nilaparvata lugens
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	jasmonic	Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores.	In this study, we identify WRKY70 as a specific herbivore-induced, mitogen-activated protein kinase-regulated rice transcription factor that physically interacts with W-box motives and prioritizes defence over growth by positively regulating jasmonic acid (JA) and negatively regulating gibberellin (GA) biosynthesis upon attack by the chewing herbivore Chilo suppressalis
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	jasmonic acid	Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores.	In this study, we identify WRKY70 as a specific herbivore-induced, mitogen-activated protein kinase-regulated rice transcription factor that physically interacts with W-box motives and prioritizes defence over growth by positively regulating jasmonic acid (JA) and negatively regulating gibberellin (GA) biosynthesis upon attack by the chewing herbivore Chilo suppressalis
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	defence	Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores.	In this study, we identify WRKY70 as a specific herbivore-induced, mitogen-activated protein kinase-regulated rice transcription factor that physically interacts with W-box motives and prioritizes defence over growth by positively regulating jasmonic acid (JA) and negatively regulating gibberellin (GA) biosynthesis upon attack by the chewing herbivore Chilo suppressalis
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	transcription factor	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	resistance	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 Using transgenic plants defective in early signaling, we show that OsMPK3 is required, and that OsMPK6 and OsWRKY70 contribute to indole-mediated defense priming of JA-dependent herbivore resistance
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	defense	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 Using transgenic plants defective in early signaling, we show that OsMPK3 is required, and that OsMPK6 and OsWRKY70 contribute to indole-mediated defense priming of JA-dependent herbivore resistance
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	jasmonate	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	jasmonic	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	jasmonic acid	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	Kinase	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	protein kinase	Molecular dissection of early defense signaling underlying volatile-mediated defense regulation and herbivore resistance in rice.	 primes) the transcription, accumulation and activation of the mitogen-activated protein kinase OsMPK3 as well as the expression of the downstream WRKY transcription factor OsWRKY70 and several jasmonate biosynthesis genes, resulting in a higher accumulation of jasmonic acid (JA)
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	leaf	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 In addition, OsWRKY70 overexpression lines displayed an enlarged leaf angle, reduced plant height, longer grains, and higher BR sensitivity, phenotypes similar to those of OsWRKY53 overexpression lines
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	OsWRKY24 functions redundantly with OsWRKY53, while OsWRKY70 functions differently from OsWRKY53 in regulating grain size
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 However, whether the OsWRKY53 homologs OsWRKY24 and OsWRKY70 also contribute to grain size which remains unknown
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Importantly, a systematic characterization of seed length in the oswrky70 single, the oswrky53 oswrky70 double and the oswrky24 oswrky53 oswrky70 triple mutant indicated that loss of OsWRKY70 also leads to increased seed length, suggesting that OsWRKY70 might play a role distinct from that of OsWRKY53 in regulating grain size
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Taken together, these findings suggest that OsWRKY24 and OsWRKY70 regulate rice grain size redundantly and independently from OsWRKY53
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	OsWRKY24 functions redundantly with OsWRKY53, while OsWRKY70 functions differently from OsWRKY53 in regulating grain size
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 However, whether the OsWRKY53 homologs OsWRKY24 and OsWRKY70 also contribute to grain size which remains unknown
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Importantly, a systematic characterization of seed length in the oswrky70 single, the oswrky53 oswrky70 double and the oswrky24 oswrky53 oswrky70 triple mutant indicated that loss of OsWRKY70 also leads to increased seed length, suggesting that OsWRKY70 might play a role distinct from that of OsWRKY53 in regulating grain size
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	grain size	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Taken together, these findings suggest that OsWRKY24 and OsWRKY70 regulate rice grain size redundantly and independently from OsWRKY53
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	BR	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 In addition, OsWRKY70 overexpression lines displayed an enlarged leaf angle, reduced plant height, longer grains, and higher BR sensitivity, phenotypes similar to those of OsWRKY53 overexpression lines
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	seed	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Importantly, a systematic characterization of seed length in the oswrky70 single, the oswrky53 oswrky70 double and the oswrky24 oswrky53 oswrky70 triple mutant indicated that loss of OsWRKY70 also leads to increased seed length, suggesting that OsWRKY70 might play a role distinct from that of OsWRKY53 in regulating grain size
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	plant height	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 In addition, OsWRKY70 overexpression lines displayed an enlarged leaf angle, reduced plant height, longer grains, and higher BR sensitivity, phenotypes similar to those of OsWRKY53 overexpression lines
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	leaf angle	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 In addition, OsWRKY70 overexpression lines displayed an enlarged leaf angle, reduced plant height, longer grains, and higher BR sensitivity, phenotypes similar to those of OsWRKY53 overexpression lines
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	 BR 	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 In addition, OsWRKY70 overexpression lines displayed an enlarged leaf angle, reduced plant height, longer grains, and higher BR sensitivity, phenotypes similar to those of OsWRKY53 overexpression lines
WRKY70|OsWRKY70	Os05g0474800	LOC_Os05g39720	seed length	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size in rice.	 Importantly, a systematic characterization of seed length in the oswrky70 single, the oswrky53 oswrky70 double and the oswrky24 oswrky53 oswrky70 triple mutant indicated that loss of OsWRKY70 also leads to increased seed length, suggesting that OsWRKY70 might play a role distinct from that of OsWRKY53 in regulating grain size
WSL	Os01g0559500|Os01g0559550	LOC_Os01g37870	chloroplast	A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice	Map-based cloning revealed that WSL encodes a newly identified rice PPR protein which targets the chloroplasts.
WSL	Os01g0559500|Os01g0559550	LOC_Os01g37870	ABA	A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice	The wsl shows enhanced sensitivity to ABA, salinity, and sugar, and it accumulates more H2O2 than wild-type.
WSL	Os01g0559500|Os01g0559550	LOC_Os01g37870	salinity	A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice	The wsl shows enhanced sensitivity to ABA, salinity, and sugar, and it accumulates more H2O2 than wild-type.
WSL	Os01g0559500|Os01g0559550	LOC_Os01g37870	sugar	A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice	The wsl shows enhanced sensitivity to ABA, salinity, and sugar, and it accumulates more H2O2 than wild-type.
WSL	Os01g0559500|Os01g0559550	LOC_Os01g37870	abiotic stress	A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice	A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice
WSL1	Os06g0598800	LOC_Os06g39750	sheath	Wax Crystal-Sparse Leaf1 encodes a beta-ketoacyl CoA synthase involved in biosynthesis of cuticular waxes on rice leaf	Qualitative and quantitative wax composition analyses by gas chromatography-mass spectrometry (GC-MS) demonstrated a marked reduction of total cuticular wax load on wsl1 leaf blades and sheaths, and VLCFA precursors of C20-C24 decreased in both
WSL1	Os06g0598800	LOC_Os06g39750	growth	Wax Crystal-Sparse Leaf1 encodes a beta-ketoacyl CoA synthase involved in biosynthesis of cuticular waxes on rice leaf	Moreover, ubiquitous expression of the WSL1 gene gave a hint that WSL1-catalyzed elongation of VLCFAs might participate in a wide range of rice growth and development processes beyond biosynthesis of cuticular waxes
WSL1	Os06g0598800	LOC_Os06g39750	leaf	Wax Crystal-Sparse Leaf1 encodes a beta-ketoacyl CoA synthase involved in biosynthesis of cuticular waxes on rice leaf	Further analysis indicated that T-DNA was inserted in the 5'-UTR intron of the affected gene, Wax Crystal-Sparse Leaf1 (WSL1), and abnormal transcript caused the loss-of-function of WSL1 gene
WSL1	Os06g0598800	LOC_Os06g39750	leaf	Wax Crystal-Sparse Leaf1 encodes a beta-ketoacyl CoA synthase involved in biosynthesis of cuticular waxes on rice leaf	Qualitative and quantitative wax composition analyses by gas chromatography-mass spectrometry (GC-MS) demonstrated a marked reduction of total cuticular wax load on wsl1 leaf blades and sheaths, and VLCFA precursors of C20-C24 decreased in both
WSL3	Os04g0483500	LOC_Os04g40730	leaf	Wax crystal-sparse leaf 3 encoding a beta-ketoacyl-CoA reductase is involved in cuticular wax biosynthesis in rice.	WSL3 encodes beta-ketoacyl-CoA reductase (KCR) in rice, in a similar way to YBR159w in yeast, and is essential for VLCFA biosynthesis and leaf wax accumulation
WSL4|CUT1L|HMS1	Os03g0220100	LOC_Os03g12030	pollen	HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).	HMS1 catalyzed the biosynthesis of the C26 and C28 VLCFAs, contributing to the formation of bacula and tryphine in the pollen wall, which protect the pollen from dehydration
WSL4|CUT1L|HMS1	Os03g0220100	LOC_Os03g12030	pollen	HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).	Under low-humidity, hms1 pollen showed poor adhesion and reduced germination on the stigmas, which could be rescued by increasing humidity
WSL4|CUT1L|HMS1	Os03g0220100	LOC_Os03g12030	sterility	HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).	HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).
WSL4|CUT1L|HMS1	Os03g0220100	LOC_Os03g12030	seed	HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).	The hms1 mutant displayed decreased seed setting at low-humidity, but normal seed setting at high-humidity
WSL4|CUT1L|HMS1	Os03g0220100	LOC_Os03g12030	breeding	HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).	Furthermore, both japonica and indica rice varieties with defective HMS1 exhibited HGMS, suggesting that hms1 could potentially be used in hybrid breeding
WSL4|CUT1L|HMS1	Os03g0220100	LOC_Os03g12030	male sterility	HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).	HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).
WSL4|CUT1L|HMS1	Os03g0220100	LOC_Os03g12030	pollen wall	HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).	HMS1 catalyzed the biosynthesis of the C26 and C28 VLCFAs, contributing to the formation of bacula and tryphine in the pollen wall, which protect the pollen from dehydration
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	chloroplast	WSL5, a Pentatricopeptide Repeat Protein, is Essential for Chloroplast Biogenesis in Rice Under Cold Stress.	wsl5 was impaired in chloroplast ribosome biogenesis under cold stress
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	chloroplast	WSL5, a Pentatricopeptide Repeat Protein, is Essential for Chloroplast Biogenesis in Rice Under Cold Stress.	We propose that the WSL5 allele is required for normal chloroplast development in maintaining retrograde signaling from plastids to the nucleus under cold stress
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	development	WSL5, a Pentatricopeptide Repeat Protein, is Essential for Chloroplast Biogenesis in Rice Under Cold Stress.	We propose that the WSL5 allele is required for normal chloroplast development in maintaining retrograde signaling from plastids to the nucleus under cold stress
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	cold stress	WSL5, a Pentatricopeptide Repeat Protein, is Essential for Chloroplast Biogenesis in Rice Under Cold Stress.	wsl5 was impaired in chloroplast ribosome biogenesis under cold stress
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	cold stress	WSL5, a Pentatricopeptide Repeat Protein, is Essential for Chloroplast Biogenesis in Rice Under Cold Stress.	We propose that the WSL5 allele is required for normal chloroplast development in maintaining retrograde signaling from plastids to the nucleus under cold stress
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	stress	WSL5, a Pentatricopeptide Repeat Protein, is Essential for Chloroplast Biogenesis in Rice Under Cold Stress.	wsl5 was impaired in chloroplast ribosome biogenesis under cold stress
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	stress	WSL5, a Pentatricopeptide Repeat Protein, is Essential for Chloroplast Biogenesis in Rice Under Cold Stress.	We propose that the WSL5 allele is required for normal chloroplast development in maintaining retrograde signaling from plastids to the nucleus under cold stress
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	nucleus	WSL5, a Pentatricopeptide Repeat Protein, is Essential for Chloroplast Biogenesis in Rice Under Cold Stress.	We propose that the WSL5 allele is required for normal chloroplast development in maintaining retrograde signaling from plastids to the nucleus under cold stress
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	chloroplast development	WSL5, a Pentatricopeptide Repeat Protein, is Essential for Chloroplast Biogenesis in Rice Under Cold Stress.	We propose that the WSL5 allele is required for normal chloroplast development in maintaining retrograde signaling from plastids to the nucleus under cold stress
WSL5|OsPPR4	Os04g0684500	LOC_Os04g58780	development	The coordinated action of PPR4 and EMB2654 on each intron half mediates trans-splicing of rps12 transcripts in plant chloroplasts.	Arabidopsis atppr4 and rice osppr4 mutants are embryo-lethal and seedling-lethal 3 weeks after germination, respectively, showing that PPR4 is essential in the development of both dicot and monocot plants
WSL6	Os05g0567300	LOC_Os05g49220	chloroplast	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.
WSL6	Os05g0567300	LOC_Os05g49220	chloroplast	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	Rice WSL6 is involved in chloroplast ribosome biogenesis and is essential for early chloroplast development
WSL6	Os05g0567300	LOC_Os05g49220	chloroplast	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	Transmission electron microscopy analysis showed that the wsl6 mutant was defective in early chloroplast development
WSL6	Os05g0567300	LOC_Os05g49220	chloroplast	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	Further research showed that WSL6 binds to the 16S ribosomal RNA (rRNA) subunit of chloroplast ribosome 30S
WSL6	Os05g0567300	LOC_Os05g49220	chloroplast	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	In summary, these results show that WSL6 is essential for chloroplast ribosome biogenesis during early chloroplast development in rice
WSL6	Os05g0567300	LOC_Os05g49220	development	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.
WSL6	Os05g0567300	LOC_Os05g49220	development	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	Rice WSL6 is involved in chloroplast ribosome biogenesis and is essential for early chloroplast development
WSL6	Os05g0567300	LOC_Os05g49220	development	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	Transmission electron microscopy analysis showed that the wsl6 mutant was defective in early chloroplast development
WSL6	Os05g0567300	LOC_Os05g49220	development	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	In summary, these results show that WSL6 is essential for chloroplast ribosome biogenesis during early chloroplast development in rice
WSL6	Os05g0567300	LOC_Os05g49220	map-based cloning	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	Map-based cloning revealed that WSL6 encodes an Era-type guanosine-5'-triphosphate (GTP)-binding protein located in chloroplasts
WSL6	Os05g0567300	LOC_Os05g49220	chloroplast development	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.
WSL6	Os05g0567300	LOC_Os05g49220	chloroplast development	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	Rice WSL6 is involved in chloroplast ribosome biogenesis and is essential for early chloroplast development
WSL6	Os05g0567300	LOC_Os05g49220	chloroplast development	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	Transmission electron microscopy analysis showed that the wsl6 mutant was defective in early chloroplast development
WSL6	Os05g0567300	LOC_Os05g49220	chloroplast development	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	In summary, these results show that WSL6 is essential for chloroplast ribosome biogenesis during early chloroplast development in rice
WSL8|OsdNK1	Os05g0430200	LOC_Os05g35520	chloroplast	WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.	WSL8 encoding a deoxyribonucleoside kinase (dNK) that catalyzes the first step in the salvage pathway of nucleotide synthesis plays an important role in early chloroplast development in rice
WSL8|OsdNK1	Os05g0430200	LOC_Os05g35520	chloroplast	WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.	A subcellular localization experiment showed the WSL8 protein was targeted in the chloroplast and its transcripts were expressed in various tissues, with more abundance in young leaves and nodes
WSL8|OsdNK1	Os05g0430200	LOC_Os05g35520	development	WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.	WSL8 encoding a deoxyribonucleoside kinase (dNK) that catalyzes the first step in the salvage pathway of nucleotide synthesis plays an important role in early chloroplast development in rice
WSL8|OsdNK1	Os05g0430200	LOC_Os05g35520	map-based cloning	WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.	Map-based cloning revealed that WSL8 encodes a dNK on chromosome 5
WSL8|OsdNK1	Os05g0430200	LOC_Os05g35520	Kinase	WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.	WSL8 encoding a deoxyribonucleoside kinase (dNK) that catalyzes the first step in the salvage pathway of nucleotide synthesis plays an important role in early chloroplast development in rice
WSL8|OsdNK1	Os05g0430200	LOC_Os05g35520	chloroplast development	WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.	WSL8 encoding a deoxyribonucleoside kinase (dNK) that catalyzes the first step in the salvage pathway of nucleotide synthesis plays an important role in early chloroplast development in rice
WSL9	Os03g0169800	LOC_Os03g07370	chloroplast	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice
WSL9	Os03g0169800	LOC_Os03g07370	chloroplast	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	Expression levels of plastid genome-encoded genes, which are transcribed by plastid-coded RNA polymerase (PEP), chloroplast development genes and photosynthesis-related genes were altered in the wsl9 mutant
WSL9	Os03g0169800	LOC_Os03g07370	chloroplast	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	Conclusion: WSL9 encodes an HNH endonuclease domain-containing protein that is essential for early chloroplast development
WSL9	Os03g0169800	LOC_Os03g07370	temperature	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	The wsl9 mutant was albinic when grown at low temperature
WSL9	Os03g0169800	LOC_Os03g07370	development	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice
WSL9	Os03g0169800	LOC_Os03g07370	development	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	Expression levels of plastid genome-encoded genes, which are transcribed by plastid-coded RNA polymerase (PEP), chloroplast development genes and photosynthesis-related genes were altered in the wsl9 mutant
WSL9	Os03g0169800	LOC_Os03g07370	development	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	Conclusion: WSL9 encodes an HNH endonuclease domain-containing protein that is essential for early chloroplast development
WSL9	Os03g0169800	LOC_Os03g07370	chloroplast development	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice
WSL9	Os03g0169800	LOC_Os03g07370	chloroplast development	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	Expression levels of plastid genome-encoded genes, which are transcribed by plastid-coded RNA polymerase (PEP), chloroplast development genes and photosynthesis-related genes were altered in the wsl9 mutant
WSL9	Os03g0169800	LOC_Os03g07370	chloroplast development	WSL9 Encodes an HNH Endonuclease Domain-Containing Protein that Is Essential for Early Chloroplast Development in Rice	Conclusion: WSL9 encodes an HNH endonuclease domain-containing protein that is essential for early chloroplast development
WSP1	Os04g0601800	LOC_Os04g51280	leaf	The RNA editing factor WSP1 is essential for chloroplast development in rice.	The ribosome biogenesis defect and plastid-encoded RNA polymerase complex activity impairment in wsp1 potentially account for the stripe leaf in the seedling and white panicle in the heading stage
WSP1	Os04g0601800	LOC_Os04g51280	panicle	The RNA editing factor WSP1 is essential for chloroplast development in rice.	The ribosome biogenesis defect and plastid-encoded RNA polymerase complex activity impairment in wsp1 potentially account for the stripe leaf in the seedling and white panicle in the heading stage
WSP1	Os04g0601800	LOC_Os04g51280	seedling	The RNA editing factor WSP1 is essential for chloroplast development in rice.	The ribosome biogenesis defect and plastid-encoded RNA polymerase complex activity impairment in wsp1 potentially account for the stripe leaf in the seedling and white panicle in the heading stage
WSP1	Os04g0601800	LOC_Os04g51280	chloroplast	The RNA editing factor WSP1 is essential for chloroplast development in rice.	The RNA editing factor WSP1 is essential for chloroplast development in rice.
WSP1	Os04g0601800	LOC_Os04g51280	chloroplast	The RNA editing factor WSP1 is essential for chloroplast development in rice.	Transmission electron microscopy and chlorophyll content measurements revealed a chloroplast developmental defect and a reduced and low rate of chlorophyll accumulation in wsp1
WSP1	Os04g0601800	LOC_Os04g51280	chloroplast	The RNA editing factor WSP1 is essential for chloroplast development in rice.	Owing to plastid RNA factor editing defect, chloroplast ribosome biogenesis and ndhA splicing were also impaired in wsp1
WSP1	Os04g0601800	LOC_Os04g51280	chloroplast	The RNA editing factor WSP1 is essential for chloroplast development in rice.	Together, this is the first study to demonstrate the importance of a rice WSP1 protein in chloroplast development and to broaden our knowledge about MORF family members (WSP1) in rice
WSP1	Os04g0601800	LOC_Os04g51280	development	The RNA editing factor WSP1 is essential for chloroplast development in rice.	The RNA editing factor WSP1 is essential for chloroplast development in rice.
WSP1	Os04g0601800	LOC_Os04g51280	development	The RNA editing factor WSP1 is essential for chloroplast development in rice.	Together, this is the first study to demonstrate the importance of a rice WSP1 protein in chloroplast development and to broaden our knowledge about MORF family members (WSP1) in rice
WSP1	Os04g0601800	LOC_Os04g51280	chloroplast developmental	The RNA editing factor WSP1 is essential for chloroplast development in rice.	Transmission electron microscopy and chlorophyll content measurements revealed a chloroplast developmental defect and a reduced and low rate of chlorophyll accumulation in wsp1
WSP1	Os04g0601800	LOC_Os04g51280	chloroplast development	The RNA editing factor WSP1 is essential for chloroplast development in rice.	The RNA editing factor WSP1 is essential for chloroplast development in rice.
WSP1	Os04g0601800	LOC_Os04g51280	chloroplast development	The RNA editing factor WSP1 is essential for chloroplast development in rice.	Transmission electron microscopy and chlorophyll content measurements revealed a chloroplast developmental defect and a reduced and low rate of chlorophyll accumulation in wsp1
WSP1	Os04g0601800	LOC_Os04g51280	chloroplast development	The RNA editing factor WSP1 is essential for chloroplast development in rice.	Together, this is the first study to demonstrate the importance of a rice WSP1 protein in chloroplast development and to broaden our knowledge about MORF family members (WSP1) in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	WTG1 determines grain size and shape mainly by influencing cell expansion
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	Overexpression of WTG1 results in narrow, thin and long grains due to narrow and long cells, further supporting the role of WTG1 in determining grain size and shape
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	Thus, our findings identify the otubain-like protease WTG1 as an important factor that determines grain size and shape, suggesting WTG1 has the potential to improve grain size and shape in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain size	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	WTG1 determines grain size and shape mainly by influencing cell expansion
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain size	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	Overexpression of WTG1 results in narrow, thin and long grains due to narrow and long cells, further supporting the role of WTG1 in determining grain size and shape
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain size	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	Thus, our findings identify the otubain-like protease WTG1 as an important factor that determines grain size and shape, suggesting WTG1 has the potential to improve grain size and shape in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	cytoplasm	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	WTG1 is expressed in developing grains and panicles, and the GFP-WTG1 fusion protein is present in the nucleus and the cytoplasm
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	nucleus	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	WTG1 is expressed in developing grains and panicles, and the GFP-WTG1 fusion protein is present in the nucleus and the cytoplasm
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	transcription factor	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	OsOTUB1 interacts with the E2 ubiquitin-conjugating protein OsUBC13 and the squamosa promoter-binding protein-like transcription factor OsSPL14
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Downregulation of OsOTUB1 enhances meristematic activity, resulting in reduced tiller number, increased grain number, enhanced grain weight and a consequent increase in grain yield in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	tiller	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Downregulation of OsOTUB1 enhances meristematic activity, resulting in reduced tiller number, increased grain number, enhanced grain weight and a consequent increase in grain yield in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain number	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Downregulation of OsOTUB1 enhances meristematic activity, resulting in reduced tiller number, increased grain number, enhanced grain weight and a consequent increase in grain yield in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain yield	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Downregulation of OsOTUB1 enhances meristematic activity, resulting in reduced tiller number, increased grain number, enhanced grain weight and a consequent increase in grain yield in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	yield	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Downregulation of OsOTUB1 enhances meristematic activity, resulting in reduced tiller number, increased grain number, enhanced grain weight and a consequent increase in grain yield in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	architecture	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Conversely, loss-of-function of OsOTUB1 is correlated with the accumulation of high levels of OsSPL14, resulting in the NPT architecture
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain weight	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Downregulation of OsOTUB1 enhances meristematic activity, resulting in reduced tiller number, increased grain number, enhanced grain weight and a consequent increase in grain yield in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	tiller number	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Downregulation of OsOTUB1 enhances meristematic activity, resulting in reduced tiller number, increased grain number, enhanced grain weight and a consequent increase in grain yield in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain	GWC1 is essential for high grain quality in rice	GWC1 is essential for high grain quality in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain	GWC1 is essential for high grain quality in rice	The gwc1 mutants had poor grain appearance quality consistent with the measured values for the percentage of grains with chalkiness, square of chalky endosperm, the total starch, amylose and sucrose contents
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain	GWC1 is essential for high grain quality in rice	Milling quality and grain size were also affected in the gwc1 mutants
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain	GWC1 is essential for high grain quality in rice	GWC1 is likely to regulate grain appearance quality through genes involved in sucrose metabolism and starch biosynthesis
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain	GWC1 is essential for high grain quality in rice	Overall, the present findings reveal that GWC1 is important for grain quality and yield due to its effects on grain chalkiness and size
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	starch	GWC1 is essential for high grain quality in rice	GWC1 is likely to regulate grain appearance quality through genes involved in sucrose metabolism and starch biosynthesis
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	yield	GWC1 is essential for high grain quality in rice	Overall, the present findings reveal that GWC1 is important for grain quality and yield due to its effects on grain chalkiness and size
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain size	GWC1 is essential for high grain quality in rice	Milling quality and grain size were also affected in the gwc1 mutants
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	cytoplasm	GWC1 is essential for high grain quality in rice	GWC1 transcripts accumulated to high levels in early endosperm after fertilization and developing inflorescences, and GWC1-green fluorescent protein (GFP) signal was detected in the nucleus and cytoplasm
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	nucleus	GWC1 is essential for high grain quality in rice	GWC1 transcripts accumulated to high levels in early endosperm after fertilization and developing inflorescences, and GWC1-green fluorescent protein (GFP) signal was detected in the nucleus and cytoplasm
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	endosperm	GWC1 is essential for high grain quality in rice	GWC1 transcripts accumulated to high levels in early endosperm after fertilization and developing inflorescences, and GWC1-green fluorescent protein (GFP) signal was detected in the nucleus and cytoplasm
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	chalkiness	GWC1 is essential for high grain quality in rice	Overall, the present findings reveal that GWC1 is important for grain quality and yield due to its effects on grain chalkiness and size
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	quality	GWC1 is essential for high grain quality in rice	GWC1 is essential for high grain quality in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	quality	GWC1 is essential for high grain quality in rice	The gwc1 mutants had poor grain appearance quality consistent with the measured values for the percentage of grains with chalkiness, square of chalky endosperm, the total starch, amylose and sucrose contents
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	quality	GWC1 is essential for high grain quality in rice	Milling quality and grain size were also affected in the gwc1 mutants
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	quality	GWC1 is essential for high grain quality in rice	GWC1 is likely to regulate grain appearance quality through genes involved in sucrose metabolism and starch biosynthesis
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	quality	GWC1 is essential for high grain quality in rice	Overall, the present findings reveal that GWC1 is important for grain quality and yield due to its effects on grain chalkiness and size
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	starch biosynthesis	GWC1 is essential for high grain quality in rice	GWC1 is likely to regulate grain appearance quality through genes involved in sucrose metabolism and starch biosynthesis
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	sucrose	GWC1 is essential for high grain quality in rice	The gwc1 mutants had poor grain appearance quality consistent with the measured values for the percentage of grains with chalkiness, square of chalky endosperm, the total starch, amylose and sucrose contents
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	sucrose	GWC1 is essential for high grain quality in rice	GWC1 is likely to regulate grain appearance quality through genes involved in sucrose metabolism and starch biosynthesis
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain quality	GWC1 is essential for high grain quality in rice	GWC1 is essential for high grain quality in rice
WTG1|OsOTUB1|GWC1	Os08g0537800	LOC_Os08g42540	grain quality	GWC1 is essential for high grain quality in rice	Overall, the present findings reveal that GWC1 is important for grain quality and yield due to its effects on grain chalkiness and size
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	Du1 specifically affects the splicing efficiency of Wx(b) and regulates starch biosynthesis by mediating the expression of starch biosynthesis genes
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	These results strongly suggest that Du1 may function as a regulator of the starch biosynthesis by affecting the splicing of Wx(b) and the expression of other genes involved in the rice starch biosynthetic pathways
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Differential regulation of waxy gene expression in rice endosperm	In order to examine the effects of different alleles on the gene expression at the waxy locus, the Wx gene product which controls the synthesis of amylose was isolated from endosperm starch of rice plants and analysed by electrophoretic techniques
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Differential regulation of waxy gene expression in rice endosperm	The major protein bound to starch granules was absent in most of waxy strains and increased with the number of Wx alleles in triploid endosperms, suggesting that the major protein is the Wx gene product
Wx|qFC6	Os06g0133000	LOC_Os06g04200	seed	A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice	The rice waxy (wx) locus has two functional alleles, Wxa and Wxb, which are defined by a large difference in the amount of the gene product, called Wx protein, that accumulates in mature seeds
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Altered tissue-specific expression at the Wx gene of the opaque mutants in rice	The level of the gene product bound to starch granules was slightly lower in the NILs with Wxop than that with Wxb, showing a positive correlation with amylose content in the endosperm
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice	Common non-waxy ( Wx) rice cultivars contain two different alleles at the waxy locus, designated Wx(a) and Wx(b), which encode different levels of granule-bound starch synthases and are hence involved in the control of endosperm amylose content
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice	Common non-waxy ( Wx) rice cultivars contain two different alleles at the waxy locus, designated Wx(a) and Wx(b), which encode different levels of granule-bound starch synthases and are hence involved in the control of endosperm amylose content
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Map-based cloning proves qGC-6, a major QTL for gel consistency of japonica/indica cross, responds by Waxy in rice (Oryza sativa L.)	Gene prediction analysis of the 11-kb DNA sequence containing qGC-6 identified only one putative ORF, which encodes granule-bound starch synthesis protein (Wx protein)
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Identification and characterization of a novel Waxy allele from a Yunnan rice landrace	Genetic analyses and transgenic experiments revealed that low AC in Haopi was controlled by a novel allele of the Wx locus, Wx(hp), encoding a granule-bound starch synthase (GBSSI)
Wx|qFC6	Os06g0133000	LOC_Os06g04200	domestication	Genetic studies of speciation in cultivated rice. 5. Inter- and intraspecific differentiation in the waxy gene expression of rice	sativa), suggesting that Wx b might have been selected for through the difference in grain quality during domestication
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	A novel wx mutation caused by insertion of a retrotransposon-like sequence in a glutinous cultivar of rice (Oryza sativa)	Most japonica-type glutinous rice was found to have a 23-bp duplication in the second exon, which causes loss of the function of granule-bound starch synthase (GBSS) encoded by the Wx gene
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm	Furthermore, OsbZIP58 was shown to bind directly to the promoters of six starch-synthesizing genes, OsAGPL3, Wx, OsSSIIa, SBE1, OsBEIIb, and ISA2, and to regulate their expression
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain	Genetic Polymorphism of Wx Gene and Its Correlation with Main Grain Quality Characteristics in Rice	Genetic Polymorphism of Wx Gene and Its Correlation with Main Grain Quality Characteristics in Rice
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain	Genetic studies of speciation in cultivated rice. 5. Inter- and intraspecific differentiation in the waxy gene expression of rice	sativa), suggesting that Wx b might have been selected for through the difference in grain quality during domestication
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	Differential regulation of waxy gene expression in rice endosperm	In order to examine the effects of different alleles on the gene expression at the waxy locus, the Wx gene product which controls the synthesis of amylose was isolated from endosperm starch of rice plants and analysed by electrophoretic techniques
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	Differential regulation of waxy gene expression in rice endosperm	The major protein bound to starch granules was absent in most of waxy strains and increased with the number of Wx alleles in triploid endosperms, suggesting that the major protein is the Wx gene product
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	Molecular Characterization of Wx-mq, a Novel Mutant Gene for Low-amylose Content in Endosperm of Rice (Oryza sativa L.)	Molecular Characterization of Wx-mq, a Novel Mutant Gene for Low-amylose Content in Endosperm of Rice (Oryza sativa L.)
Wx|qFC6	Os06g0133000	LOC_Os06g04200	seed	A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5' splice site of the first intron	It is of interest that the Wxb allele of rice carrying the G to T mutation of intron 1 has been conserved in the history of rice cultivation because there is a low amylose content of the seed caused by this mutation
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain	Map-based cloning proves qGC-6, a major QTL for gel consistency of japonica/indica cross, responds by Waxy in rice (Oryza sativa L.)	Genetic evidences revealed that Wx might contribute equally to the grain amylose content-controlling gene as well as gel consistency
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Granule-bound starch synthase I is responsible for biosynthesis of extra-long unit chains of amylopectin in rice	A rice Wx gene encoding a granule-bound starch synthase I (GBSSI) was introduced into the null-mutant waxy (wx) rice, and its effect on endosperm starches was examined
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	Altered tissue-specific expression at the Wx gene of the opaque mutants in rice	To elucidate the allelic diversity at the Waxy (Wx) gene which controls the amylose synthesis, two cultivated strains having opaque endosperms were studied
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	Altered tissue-specific expression at the Wx gene of the opaque mutants in rice	The genetic experiments revealed that an allele, Wxop, controls opaque endosperms which show chalky as wx endosperms in spite of the production of amylose
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	Altered tissue-specific expression at the Wx gene of the opaque mutants in rice	The level of the gene product bound to starch granules was slightly lower in the NILs with Wxop than that with Wxb, showing a positive correlation with amylose content in the endosperm
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain quality	Genetic studies of speciation in cultivated rice. 5. Inter- and intraspecific differentiation in the waxy gene expression of rice	sativa), suggesting that Wx b might have been selected for through the difference in grain quality during domestication
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	Genetic studies of speciation in cultivated rice. 5. Inter- and intraspecific differentiation in the waxy gene expression of rice	Wx a drastically enhanced the quantitative level of Wx protein as well as the amylose content in endosperm starch as compared with Wx b
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice	glaberrima have a normal sequence of GT at the 5' splice junction of the first intron, representing a high expression level of the Wx transcripts in the endosperm and a high beta-glucuronidase (GUS) activity in protoplasts
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch biosynthesis	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	Du1 specifically affects the splicing efficiency of Wx(b) and regulates starch biosynthesis by mediating the expression of starch biosynthesis genes
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch biosynthesis	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	These results strongly suggest that Du1 may function as a regulator of the starch biosynthesis by affecting the splicing of Wx(b) and the expression of other genes involved in the rice starch biosynthetic pathways
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch biosynthesis	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.)
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Genetic studies of speciation in cultivated rice. 5. Inter- and intraspecific differentiation in the waxy gene expression of rice	Wx a drastically enhanced the quantitative level of Wx protein as well as the amylose content in endosperm starch as compared with Wx b
Wx|qFC6	Os06g0133000	LOC_Os06g04200	anther	Altered tissue-specific expression at the Wx gene of the opaque mutants in rice	Extracts from mature anthers indicated that the gene product was markedly reduced in the NILs with Wxop as well as that with wx, showing an altered expression in the tissue specificity in the Wxop lines
Wx|qFC6	Os06g0133000	LOC_Os06g04200	endosperm	Granule-bound starch synthase I is responsible for biosynthesis of extra-long unit chains of amylopectin in rice	A rice Wx gene encoding a granule-bound starch synthase I (GBSSI) was introduced into the null-mutant waxy (wx) rice, and its effect on endosperm starches was examined
Wx|qFC6	Os06g0133000	LOC_Os06g04200	branching	Granule-bound starch synthase I is responsible for biosynthesis of extra-long unit chains of amylopectin in rice	Labelle (Wx(a)) in terms of a higher degree of branching and size distribution
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5' splice site of the first intron	In cultivated rice two wild-type alleles, Wxa and Wxb, predominate at the waxy locus, which encodes granule-bound starch synthase
Wx|qFC6	Os06g0133000	LOC_Os06g04200	domestication	A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice	rufipogon, its wild progenitor, by this mutation, and, therefore, a single base change that has altered the regulation of the Wx gene at the posttranscriptional level probably occurred during the domestication of rice
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain quality	Genetic Polymorphism of Wx Gene and Its Correlation with Main Grain Quality Characteristics in Rice	Genetic Polymorphism of Wx Gene and Its Correlation with Main Grain Quality Characteristics in Rice
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain	Effects of Wx and Its Interaction With SSIII-2 on Rice Eating and Cooking Qualities.	 To investigate the effects of Wx and its interaction with SSIII-2 on grain ECQs, a population from a hybrid combination was established as a research material
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Effects of Wx and Its Interaction With SSIII-2 on Rice Eating and Cooking Qualities.	The Wx gene encodes a granule-bound starch synthase (GBSS) and plays a key role in determining rice eating and cooking qualities (ECQs)
Wx|qFC6	Os06g0133000	LOC_Os06g04200	breeding	Effects of Wx and Its Interaction With SSIII-2 on Rice Eating and Cooking Qualities.	 The combined effects of different SNPs of Wx are very important for rice quality breeding
Wx|qFC6	Os06g0133000	LOC_Os06g04200	quality	Effects of Wx and Its Interaction With SSIII-2 on Rice Eating and Cooking Qualities.	 The results revealed various effects of SSIII-2 on rice quality under different backgrounds of Wx alleles
Wx|qFC6	Os06g0133000	LOC_Os06g04200	quality	Effects of Wx and Its Interaction With SSIII-2 on Rice Eating and Cooking Qualities.	 The combined effects of different SNPs of Wx are very important for rice quality breeding
Wx|qFC6	Os06g0133000	LOC_Os06g04200	quality	Wxlv, the ancestral allele of rice Waxy gene.	 The findings also shed light on the evolution of various Wx alleles, which have greatly contributed to improving the eating and cooking quality of rice
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain	Quantitative regulation of Waxy expression by CRISPR/Cas9-based promoter and 5'UTR-intron editing improves grain quality in rice.	), the varied activities of natural Wx alleles regulate different amylose contents (AC), gel consistency (GC), and pasting viscosity of grain starches; these factors together influence the grain appearance, cooking/eating quality, and starch physical characters (Zhang et al
Wx|qFC6	Os06g0133000	LOC_Os06g04200	starch	Quantitative regulation of Waxy expression by CRISPR/Cas9-based promoter and 5'UTR-intron editing improves grain quality in rice.	), the varied activities of natural Wx alleles regulate different amylose contents (AC), gel consistency (GC), and pasting viscosity of grain starches; these factors together influence the grain appearance, cooking/eating quality, and starch physical characters (Zhang et al
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain	A rare Waxy allele coordinately improves rice eating and cooking quality and grain transparency	 Here we identified a rare Wx allele, Wxmw , which combines a favorable AC, improved ECQ and grain transparency
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain	The origin of Wx la provides new insights into the improvement of grain quality in rice	The origin of Wx la provides new insights into the improvement of grain quality in rice
Wx|qFC6	Os06g0133000	LOC_Os06g04200	breeding	The origin of Wx la provides new insights into the improvement of grain quality in rice	 This study thus provides insights into the evolution of the Wx locus and facilitates molecular breeding for quality in rice
Wx|qFC6	Os06g0133000	LOC_Os06g04200	quality	The origin of Wx la provides new insights into the improvement of grain quality in rice	The origin of Wx la provides new insights into the improvement of grain quality in rice
Wx|qFC6	Os06g0133000	LOC_Os06g04200	quality	The origin of Wx la provides new insights into the improvement of grain quality in rice	 A genome-wide association study highlighted the Wx gene as the major factor underlying variation in taste and eating quality
Wx|qFC6	Os06g0133000	LOC_Os06g04200	quality	The origin of Wx la provides new insights into the improvement of grain quality in rice	 This study thus provides insights into the evolution of the Wx locus and facilitates molecular breeding for quality in rice
Wx|qFC6	Os06g0133000	LOC_Os06g04200	grain quality	The origin of Wx la provides new insights into the improvement of grain quality in rice	The origin of Wx la provides new insights into the improvement of grain quality in rice
Wx|qFC6	Os06g0133000	LOC_Os06g04200	quality	Genomic Regions Involved in Differences in Eating and Cooking Quality Other than Wx and Alk Genes between indica and japonica Rice Cultivars	Genomic Regions Involved in Differences in Eating and Cooking Quality Other than Wx and Alk Genes between indica and japonica Rice Cultivars
Xa1	None	LOC_Os04g53120	bacterial blight	Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation	Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation
Xa1	None	LOC_Os04g53120	blight	Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation	Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation
Xa1	None	LOC_Os04g53120	disease	Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation	The deduced amino acid sequence of the Xa1 gene product contains nucleotide binding sites (NBS) and a new type of leucine-rich repeats (LRR); thus, Xa1 is a member of the NBS-LRR class of plant disease-resistance genes, but quite different from Xa21, another BB-resistance gene isolated from rice
Xa1	None	LOC_Os04g53120	resistance	Interfering TAL effectors of Xanthomonas oryzae neutralize R-gene-mediated plant disease resistance.	However, the iTALEs present in many isolates interfere with the otherwise broad-spectrum resistance conferred by Xa1
Xa1	None	LOC_Os04g53120	resistance	Multiple Alleles Encoding Atypical NLRs with Unique Central Tandem Repeats in Rice Confer Resistance to Xanthomonas oryzae pv. oryzae	Although Xa1-2 and Xa14 conferred different resistance spectra, their performance could be attenuated by iTALEs, as has previously been reported for Xa1
Xa1	None	LOC_Os04g53120	blight	Multiple Alleles Encoding Atypical NLRs with Unique Central Tandem Repeats in Rice Confer Resistance to Xanthomonas oryzae pv. oryzae	Here, we report the isolation of three new bacterial blight R genes in rice, Xa1-2, Xa14, and Xa31(t), which were allelic to Xa1 and encoded atypical NLRs with unique central tandem repeats (CTRs)
Xa1	None	LOC_Os04g53120	bacterial blight	Multiple Alleles Encoding Atypical NLRs with Unique Central Tandem Repeats in Rice Confer Resistance to Xanthomonas oryzae pv. oryzae	Here, we report the isolation of three new bacterial blight R genes in rice, Xa1-2, Xa14, and Xa31(t), which were allelic to Xa1 and encoded atypical NLRs with unique central tandem repeats (CTRs)
Xa1	None	LOC_Os04g53120	resistance	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors
Xa1	None	LOC_Os04g53120	resistance	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors	One mechanism involves the nucleotide-binding leucine-rich repeat (NLR) resistance gene Xa1 and TALEs
Xa1	None	LOC_Os04g53120	resistance	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors	Reciprocally, Xoo has evolved TALE variants, C-terminally truncated versions (interfering TALEs or iTALEs), to overcome Xa1 resistance
Xa1	None	LOC_Os04g53120	resistance	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors	On the other hand, iTALEs could suppress the resistance mediated by Xa1 allelic R genes, and iTALE genes were prevalent (95%) in Asian, but not in African Xoo strains
Xa1	None	LOC_Os04g53120	blight	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors
Xa1	None	LOC_Os04g53120	defense	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors	Our findings demonstrate the prominence of a defense mechanism in which rice depends on Xa1 alleles and a counteracting mechanism in which Xoo relies on iTALEs for BB
Xa1	None	LOC_Os04g53120	xoo	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors	Reciprocally, Xoo has evolved TALE variants, C-terminally truncated versions (interfering TALEs or iTALEs), to overcome Xa1 resistance
Xa1	None	LOC_Os04g53120	xoo	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors	On the other hand, iTALEs could suppress the resistance mediated by Xa1 allelic R genes, and iTALE genes were prevalent (95%) in Asian, but not in African Xoo strains
Xa1	None	LOC_Os04g53120	xoo	Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors	Our findings demonstrate the prominence of a defense mechanism in which rice depends on Xa1 alleles and a counteracting mechanism in which Xoo relies on iTALEs for BB
XA10	Os11g0586701	LOC_Os11g37620	bacterial blight	The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum	Here, we report the cloning and characterization of Xa10, a transcription activator-like (TAL) effector-dependent R gene for resistance to bacterial blight in rice (Oryza sativa)
XA10	Os11g0586701	LOC_Os11g37620	cell death	The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum	Expression of Xa10 induces programmed cell death in rice, Nicotiana benthamiana, and mammalian HeLa cells
XA10	Os11g0586701	LOC_Os11g37620	cell death	The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum	XA10 variants that abolish programmed cell death and ER Ca(2+) depletion in N
XA10	Os11g0586701	LOC_Os11g37620	cell death	The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum	We propose that XA10 is an inducible, intrinsic terminator protein that triggers programmed cell death by a conserved mechanism involving disruption of the ER and cellular Ca(2+) homeostasis
XA10	Os11g0586701	LOC_Os11g37620	cell death	The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum	The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum
XA10	Os11g0586701	LOC_Os11g37620	homeostasis	The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum	We propose that XA10 is an inducible, intrinsic terminator protein that triggers programmed cell death by a conserved mechanism involving disruption of the ER and cellular Ca(2+) homeostasis
XA10	Os11g0586701	LOC_Os11g37620	blight	The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum	Here, we report the cloning and characterization of Xa10, a transcription activator-like (TAL) effector-dependent R gene for resistance to bacterial blight in rice (Oryza sativa)
XA10	Os11g0586701	LOC_Os11g37620	disease	Genetic engineering of the Xa10 promoter for broad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae.	The rice TAL effector-dependent disease resistance gene Xa10 confers narrow-spectrum race-specific resistance to Xanthomonas oryzae pv
XA10	Os11g0586701	LOC_Os11g37620	disease resistance	Genetic engineering of the Xa10 promoter for broad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae.	The rice TAL effector-dependent disease resistance gene Xa10 confers narrow-spectrum race-specific resistance to Xanthomonas oryzae pv
XA10	Os11g0586701	LOC_Os11g37620	resistance	Genetic engineering of the Xa10 promoter for broad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae.	Genetic engineering of the Xa10 promoter for broad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae.
XA10	Os11g0586701	LOC_Os11g37620	resistance	Genetic engineering of the Xa10 promoter for broad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae.	The rice TAL effector-dependent disease resistance gene Xa10 confers narrow-spectrum race-specific resistance to Xanthomonas oryzae pv
XA10	Os11g0586701	LOC_Os11g37620	resistance	Genetic engineering of the Xa10 promoter for broad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae.	To generate broad-spectrum and durable resistance to Xoo, we developed a modified Xa10 gene, designated as Xa10(E5)
XA10	Os11g0586701	LOC_Os11g37620	resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The rice disease resistance (R) genes Xa10 confers race-specific disease resistance to X
XA10	Os11g0586701	LOC_Os11g37620	resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Xa10 encodes an executor R protein that triggers hypersensitive response and activates disease resistance
XA10	Os11g0586701	LOC_Os11g37620	resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Transgenic rice plants containing Xa10-Ni and Xa23-Ni under the Xa10 promoter provided specific disease resistance to X
XA10	Os11g0586701	LOC_Os11g37620	disease	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The rice disease resistance (R) genes Xa10 confers race-specific disease resistance to X
XA10	Os11g0586701	LOC_Os11g37620	disease	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Xa10 encodes an executor R protein that triggers hypersensitive response and activates disease resistance
XA10	Os11g0586701	LOC_Os11g37620	disease	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Transgenic rice plants containing Xa10-Ni and Xa23-Ni under the Xa10 promoter provided specific disease resistance to X
XA10	Os11g0586701	LOC_Os11g37620	disease resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The rice disease resistance (R) genes Xa10 confers race-specific disease resistance to X
XA10	Os11g0586701	LOC_Os11g37620	disease resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Xa10 encodes an executor R protein that triggers hypersensitive response and activates disease resistance
XA10	Os11g0586701	LOC_Os11g37620	disease resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Transgenic rice plants containing Xa10-Ni and Xa23-Ni under the Xa10 promoter provided specific disease resistance to X
XA10	Os11g0586701	LOC_Os11g37620	cell death	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The 19-amino acid residues at the N-terminal regions of XA10 or XA10-Ni are dispensable for their function in inducing cell death in N
XA10	Os11g0586701	LOC_Os11g37620	R protein	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Xa10 encodes an executor R protein that triggers hypersensitive response and activates disease resistance
Xa10-Ni	Os11g0586400	LOC_Os11g37570	leaf	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Like XA10, both XA10-Ni and XA23-Ni locate to the endoplasmic reticulum (ER) membrane, show self-interaction and induce ER Ca2+ depletion in leaf cells of N
Xa10-Ni	Os11g0586400	LOC_Os11g37570	resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Here we designated the two Xa10-like genes as Xa10-Ni and Xa23-Ni and characterized their function for disease resistance to rice bacterial blight
Xa10-Ni	Os11g0586400	LOC_Os11g37570	resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Both Xa10-Ni and Xa23-Ni provided disease resistance to X
Xa10-Ni	Os11g0586400	LOC_Os11g37570	resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Transgenic rice plants containing Xa10-Ni and Xa23-Ni under the Xa10 promoter provided specific disease resistance to X
Xa10-Ni	Os11g0586400	LOC_Os11g37570	resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Xa10-Ni and Xa23-Ni knock-out mutants abolished dTALE-dependent disease resistance to X
Xa10-Ni	Os11g0586400	LOC_Os11g37570	resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The results indicate that Xa10-Ni and Xa23-Ni in Nipponbare encode functional executor R proteins, which induce cell death in both monocotyledonous and dicotyledonous plants and have potential of being engineered to provide broad-spectrum disease resistance to plant pathogenic Xanthomonas species
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Here we designated the two Xa10-like genes as Xa10-Ni and Xa23-Ni and characterized their function for disease resistance to rice bacterial blight
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Both Xa10-Ni and Xa23-Ni provided disease resistance to X
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Transgenic rice plants containing Xa10-Ni and Xa23-Ni under the Xa10 promoter provided specific disease resistance to X
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Xa10-Ni and Xa23-Ni knock-out mutants abolished dTALE-dependent disease resistance to X
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The results indicate that Xa10-Ni and Xa23-Ni in Nipponbare encode functional executor R proteins, which induce cell death in both monocotyledonous and dicotyledonous plants and have potential of being engineered to provide broad-spectrum disease resistance to plant pathogenic Xanthomonas species
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Here we designated the two Xa10-like genes as Xa10-Ni and Xa23-Ni and characterized their function for disease resistance to rice bacterial blight
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Both Xa10-Ni and Xa23-Ni provided disease resistance to X
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Transgenic rice plants containing Xa10-Ni and Xa23-Ni under the Xa10 promoter provided specific disease resistance to X
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Xa10-Ni and Xa23-Ni knock-out mutants abolished dTALE-dependent disease resistance to X
Xa10-Ni	Os11g0586400	LOC_Os11g37570	disease resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The results indicate that Xa10-Ni and Xa23-Ni in Nipponbare encode functional executor R proteins, which induce cell death in both monocotyledonous and dicotyledonous plants and have potential of being engineered to provide broad-spectrum disease resistance to plant pathogenic Xanthomonas species
Xa10-Ni	Os11g0586400	LOC_Os11g37570	cell death	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Heterologous expression of Xa10-Ni and Xa23-Ni in Nicotiana benthamiana triggered cell death
Xa10-Ni	Os11g0586400	LOC_Os11g37570	cell death	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The 19-amino acid residues at the N-terminal regions of XA10 or XA10-Ni are dispensable for their function in inducing cell death in N
Xa10-Ni	Os11g0586400	LOC_Os11g37570	cell death	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The results indicate that Xa10-Ni and Xa23-Ni in Nipponbare encode functional executor R proteins, which induce cell death in both monocotyledonous and dicotyledonous plants and have potential of being engineered to provide broad-spectrum disease resistance to plant pathogenic Xanthomonas species
Xa10-Ni	Os11g0586400	LOC_Os11g37570	R protein	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The results indicate that Xa10-Ni and Xa23-Ni in Nipponbare encode functional executor R proteins, which induce cell death in both monocotyledonous and dicotyledonous plants and have potential of being engineered to provide broad-spectrum disease resistance to plant pathogenic Xanthomonas species
Xa10-Ni	Os11g0586400	LOC_Os11g37570	blight	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Here we designated the two Xa10-like genes as Xa10-Ni and Xa23-Ni and characterized their function for disease resistance to rice bacterial blight
Xa10-Ni	Os11g0586400	LOC_Os11g37570	bacterial blight	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	Here we designated the two Xa10-like genes as Xa10-Ni and Xa23-Ni and characterized their function for disease resistance to rice bacterial blight
Xa10-Ni	Os11g0586400	LOC_Os11g37570	broad-spectrum disease resistance	Induction of Xa10-like genes in rice cultivar Nipponbare confers disease resistance to rice bacterial blight.	The results indicate that Xa10-Ni and Xa23-Ni in Nipponbare encode functional executor R proteins, which induce cell death in both monocotyledonous and dicotyledonous plants and have potential of being engineered to provide broad-spectrum disease resistance to plant pathogenic Xanthomonas species
xa21	Os11g0559200	LOC_Os11g35500	 xoo 	The endoplasmic reticulum-quality control component SDF2 is essential for XA21-mediated immunity in rice	Silencing of the SDF2 genes in the XA21 rice genetic background compromises resistance to Xoo but does not affect plant growth and development
xa21	Os11g0559200	LOC_Os11g35500	defense	Transcriptional characteristics of Xa21-mediated defense responses in rice	Interestingly, most signaling and transcriptional regulator genes were downregulated at 4 and 8 hpi, suggesting that negative regulation of cellular signaling may play a role in the Xa21-mediated defense response
xa21	Os11g0559200	LOC_Os11g35500	defense	Transcriptional characteristics of Xa21-mediated defense responses in rice	Comparison of expression profiles between Xa21- and other R gene-mediated defense systems revealed interesting common responses
xa21	Os11g0559200	LOC_Os11g35500	defense	Transcriptional characteristics of Xa21-mediated defense responses in rice	Transcriptional characteristics of Xa21-mediated defense responses in rice
xa21	Os11g0559200	LOC_Os11g35500	blight	Plasma membrane localization and potential endocytosis of constitutively expressed XA21 proteins in transgenic rice	The rice pattern recognition receptor (PRR) XA21 confers race-specific resistance in leaf infection by bacterial blight Xathomonas oryzae pv
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance
xa21	Os11g0559200	LOC_Os11g35500	defense response	Transcriptional characteristics of Xa21-mediated defense responses in rice	Interestingly, most signaling and transcriptional regulator genes were downregulated at 4 and 8 hpi, suggesting that negative regulation of cellular signaling may play a role in the Xa21-mediated defense response
xa21	Os11g0559200	LOC_Os11g35500	defense response	Transcriptional characteristics of Xa21-mediated defense responses in rice	Transcriptional characteristics of Xa21-mediated defense responses in rice
xa21	Os11g0559200	LOC_Os11g35500	defense	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice	Few components involved in transducing the Xa21-mediated defense response have yet been identified
xa21	Os11g0559200	LOC_Os11g35500	defense	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice	1 are compromised in basal defense and Xa21-mediated resistance to Xoo
xa21	Os11g0559200	LOC_Os11g35500	defense	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice
xa21	Os11g0559200	LOC_Os11g35500	 xoo 	Plasma membrane localization and potential endocytosis of constitutively expressed XA21 proteins in transgenic rice	The transgenic plants constitutively expressing the wild-type XA21 or its GFP fusion displayed race-specific resistance to Xoo at the adult and seedling stages
xa21	Os11g0559200	LOC_Os11g35500	 xoo 	Plasma membrane localization and potential endocytosis of constitutively expressed XA21 proteins in transgenic rice	We also established a root infection system and demonstrated that XA21 also mediated race-specific resistance responses to Xoo in the root
xa21	Os11g0559200	LOC_Os11g35500	leaf	Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae	Here we report that Xa21 is induced by Xoo infection and that ectopic expression of Xa21 confers resistance at three leaf stage (three-week-old), overcoming the developmental limitation of XA21-mediated resistance
xa21	Os11g0559200	LOC_Os11g35500	disease	A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21	Characterization of Xa21 should facilitate understanding of plant disease resistance and lead to engineered resistance in rice
xa21	Os11g0559200	LOC_Os11g35500	disease	A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21	A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21
xa21	Os11g0559200	LOC_Os11g35500	blight	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21
xa21	Os11g0559200	LOC_Os11g35500	blight	Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India	Representative pathotypes were used to evaluate seven near-isogenic lines carrying individual bacterial blight resistance genes (Xa3, Xa4, xa5, Xa7, Xa10, xa13, and Xa21) and gene pyramids
xa21	Os11g0559200	LOC_Os11g35500	bacterial blight	Plasma membrane localization and potential endocytosis of constitutively expressed XA21 proteins in transgenic rice	The rice pattern recognition receptor (PRR) XA21 confers race-specific resistance in leaf infection by bacterial blight Xathomonas oryzae pv
xa21	Os11g0559200	LOC_Os11g35500	transcription factor	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice	Here, we report that XA21 binds to a WRKY transcription factor, called OsWRKY62
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	Short communication: developmental control of Xa21-mediated disease resistance in rice	The molecular genetic mechanism controlling the integration of the Xa21-mediated disease resistance response with the developmental program in rice is under study in this model system
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	Short communication: developmental control of Xa21-mediated disease resistance in rice	Expression of the Xa21 gene transcript is not correlated with expression of Xa21 disease resistance indicating that the developmental regulation of Xa21-resistance is either controlled post-transcriptionally or by other factors
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	Short communication: developmental control of Xa21-mediated disease resistance in rice	Short communication: developmental control of Xa21-mediated disease resistance in rice
xa21	Os11g0559200	LOC_Os11g35500	bacterial blight	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance	XA21 is a receptor-like kinase protein in rice (Oryza sativa) that confers gene-for-gene resistance to specific races of the causal agent of bacterial blight disease, Xanthomonas oryzae pv oryzae
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	The downregulation of Xb25 results in reduced levels of XA21 and compromised XA21-mediated disease resistance at the adult stage
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	Taken together, these results indicate that XB25 is required for maintaining XA21-mediated disease resistance
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance
xa21	Os11g0559200	LOC_Os11g35500	bacterial blight	Identification of Resistance Genes Effective Against Rice Bacterial Blight Pathogen in Eastern India	Representative pathotypes were used to evaluate seven near-isogenic lines carrying individual bacterial blight resistance genes (Xa3, Xa4, xa5, Xa7, Xa10, xa13, and Xa21) and gene pyramids
xa21	Os11g0559200	LOC_Os11g35500	disease	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	The downregulation of Xb25 results in reduced levels of XA21 and compromised XA21-mediated disease resistance at the adult stage
xa21	Os11g0559200	LOC_Os11g35500	disease	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	Taken together, these results indicate that XB25 is required for maintaining XA21-mediated disease resistance
xa21	Os11g0559200	LOC_Os11g35500	disease	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance
xa21	Os11g0559200	LOC_Os11g35500	defense	Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae	Ectopic expression of Xa21 also up-regulates a larger set of defense-related genes as compared to Xa21 driven by the native promoter
xa21	Os11g0559200	LOC_Os11g35500	defense response	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice	Few components involved in transducing the Xa21-mediated defense response have yet been identified
xa21	Os11g0559200	LOC_Os11g35500	disease	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21
xa21	Os11g0559200	LOC_Os11g35500	 xoo 	Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae	Here we report that Xa21 is induced by Xoo infection and that ectopic expression of Xa21 confers resistance at three leaf stage (three-week-old), overcoming the developmental limitation of XA21-mediated resistance
xa21	Os11g0559200	LOC_Os11g35500	 xoo 	Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae	These results indicate that altered regulation of Xa21 expression is useful for developing enhanced resistance to Xoo at multiple developmental stages
xa21	Os11g0559200	LOC_Os11g35500	disease	Short communication: developmental control of Xa21-mediated disease resistance in rice	The molecular genetic mechanism controlling the integration of the Xa21-mediated disease resistance response with the developmental program in rice is under study in this model system
xa21	Os11g0559200	LOC_Os11g35500	disease	Short communication: developmental control of Xa21-mediated disease resistance in rice	Expression of the Xa21 gene transcript is not correlated with expression of Xa21 disease resistance indicating that the developmental regulation of Xa21-resistance is either controlled post-transcriptionally or by other factors
xa21	Os11g0559200	LOC_Os11g35500	disease	Short communication: developmental control of Xa21-mediated disease resistance in rice	Short communication: developmental control of Xa21-mediated disease resistance in rice
xa21	Os11g0559200	LOC_Os11g35500	blight	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance	XA21 is a receptor-like kinase protein in rice (Oryza sativa) that confers gene-for-gene resistance to specific races of the causal agent of bacterial blight disease, Xanthomonas oryzae pv oryzae
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21	Characterization of Xa21 should facilitate understanding of plant disease resistance and lead to engineered resistance in rice
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21	A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21
xa21	Os11g0559200	LOC_Os11g35500	leaf	Plasma membrane localization and potential endocytosis of constitutively expressed XA21 proteins in transgenic rice	The rice pattern recognition receptor (PRR) XA21 confers race-specific resistance in leaf infection by bacterial blight Xathomonas oryzae pv
xa21	Os11g0559200	LOC_Os11g35500	 xoo 	Transcriptional characteristics of Xa21-mediated defense responses in rice	The cloned rice gene Xa21 confers resistance to a broad spectrum of Xoo races
xa21	Os11g0559200	LOC_Os11g35500	root	Plasma membrane localization and potential endocytosis of constitutively expressed XA21 proteins in transgenic rice	We also established a root infection system and demonstrated that XA21 also mediated race-specific resistance responses to Xoo in the root
xa21	Os11g0559200	LOC_Os11g35500	root	Plasma membrane localization and potential endocytosis of constitutively expressed XA21 proteins in transgenic rice	Our current study provides an insight into the nature of the XA21-mediated resistance and a practical approach using the root cell system to further dissect the cellular signaling of the PRR during the rice-Xoo interaction
xa21	Os11g0559200	LOC_Os11g35500	bacterial blight	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21
xa21	Os11g0559200	LOC_Os11g35500	leaf	Short communication: developmental control of Xa21-mediated disease resistance in rice	Xa21-resistance progressively increases from the susceptible juvenile leaf 2 stage through later stages, with 100% resistance at the adult leaf 9/10 stage
xa21	Os11g0559200	LOC_Os11g35500	disease	Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21	The rice disease resistance gene, Xa21, encodes a receptor kinase-like protein consisting of leucine-rich repeats in the putative extracellular domain and a serine/threonine kinase in the putative intracellular domain
xa21	Os11g0559200	LOC_Os11g35500	disease	Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21	Finally, our data suggest that the region of XA21 kinase corresponding to the RD kinase activation domain is not phosphorylated, revealing a distinct mode of action compared with the tomato Pto serine/threonine kinase conferring disease resistance
xa21	Os11g0559200	LOC_Os11g35500	disease	Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21	Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21
xa21	Os11g0559200	LOC_Os11g35500	blight disease	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice	We identified 192 proteins in DRMs that included receptor-like kinases (RLKs) such as Xa21, nucleotide-binding leucine-rich repeat (NB-LRR)-type disease resistance proteins, a glycosylphosphatidylinositol (GPI)-anchored protein, syntaxin, NADPH oxidase, a WD-40 repeat family protein and various GTP-binding proteins
xa21	Os11g0559200	LOC_Os11g35500	blight disease	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance	XA21 is a receptor-like kinase protein in rice (Oryza sativa) that confers gene-for-gene resistance to specific races of the causal agent of bacterial blight disease, Xanthomonas oryzae pv oryzae
xa21	Os11g0559200	LOC_Os11g35500	growth	The endoplasmic reticulum-quality control component SDF2 is essential for XA21-mediated immunity in rice	Silencing of the SDF2 genes in the XA21 rice genetic background compromises resistance to Xoo but does not affect plant growth and development
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21
xa21	Os11g0559200	LOC_Os11g35500	disease	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance	XA21 is a receptor-like kinase protein in rice (Oryza sativa) that confers gene-for-gene resistance to specific races of the causal agent of bacterial blight disease, Xanthomonas oryzae pv oryzae
xa21	Os11g0559200	LOC_Os11g35500	disease	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21	The rice disease resistance gene, Xa21, encodes a receptor kinase-like protein consisting of leucine-rich repeats in the putative extracellular domain and a serine/threonine kinase in the putative intracellular domain
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21	Finally, our data suggest that the region of XA21 kinase corresponding to the RD kinase activation domain is not phosphorylated, revealing a distinct mode of action compared with the tomato Pto serine/threonine kinase conferring disease resistance
xa21	Os11g0559200	LOC_Os11g35500	disease resistance	Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21	Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21
xa21	Os11g0559200	LOC_Os11g35500	disease	Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice	We identified 192 proteins in DRMs that included receptor-like kinases (RLKs) such as Xa21, nucleotide-binding leucine-rich repeat (NB-LRR)-type disease resistance proteins, a glycosylphosphatidylinositol (GPI)-anchored protein, syntaxin, NADPH oxidase, a WD-40 repeat family protein and various GTP-binding proteins
xa21	Os11g0559200	LOC_Os11g35500	cell death	Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity	Xb15 mutants display a severe cell death phenotype, induction of pathogenesis-related genes, and enhanced XA21-mediated resistance
xa21	Os11g0559200	LOC_Os11g35500	cell death	Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity	Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity
xa21	Os11g0559200	LOC_Os11g35500	seedling	Plasma membrane localization and potential endocytosis of constitutively expressed XA21 proteins in transgenic rice	The transgenic plants constitutively expressing the wild-type XA21 or its GFP fusion displayed race-specific resistance to Xoo at the adult and seedling stages
xa21	Os11g0559200	LOC_Os11g35500	resistance	Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection.	The Xa21 gene confers a broad and persistent resistance against BB
xa21	Os11g0559200	LOC_Os11g35500	resistance	Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection.	These results suggested that Xa21 primed critically important genes and signaling pathways, enhancing its resistance against bacterial infection
xa21	Os11g0559200	LOC_Os11g35500	blight	Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection.	Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection.
xa21	Os11g0559200	LOC_Os11g35500	bacterial blight	Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection.	Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection.
xa21	Os11g0559200	LOC_Os11g35500	resistance	XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.	The rice XA21 receptor kinase confers robust resistance to the bacterial pathogen Xanthomonas oryzaepv
xa21	Os11g0559200	LOC_Os11g35500	 xoo 	XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.	From this analysis, we identified eight genes that are up-regulated in both in elf18 treated EFR:XA21:GFP rice leaves and Xoo infected XA21 rice leaves
xa21	Os11g0559200	LOC_Os11g35500	Kinase	XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.	The rice XA21 receptor kinase confers robust resistance to the bacterial pathogen Xanthomonas oryzaepv
xa21	Os11g0559200	LOC_Os11g35500	receptor kinase	XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.	The rice XA21 receptor kinase confers robust resistance to the bacterial pathogen Xanthomonas oryzaepv
xa21	Os11g0559200	LOC_Os11g35500	pathogen	XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.	The rice XA21 receptor kinase confers robust resistance to the bacterial pathogen Xanthomonas oryzaepv
xa21	Os11g0559200	LOC_Os11g35500	resistance	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.
xa21	Os11g0559200	LOC_Os11g35500	resistance	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	The rice receptor kinase XA21 confers robust resistance to the bacterial pathogen Xanthomonas oryzaepv
xa21	Os11g0559200	LOC_Os11g35500	nucleus	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	We previously reported that XA21 is cleaved in transgenic plants overexpressing XA21 with a GFP tag (Ubi-XA21-GFP) and that the released C-terminal domain is localized to the nucleus
xa21	Os11g0559200	LOC_Os11g35500	nucleus	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	XA21 carries a predicted nuclear localization sequence (NLS) that directs the C-terminal domain to the nucleus in transient assays, whereas alanine substitutions in the NLS disrupt the nuclear localization
xa21	Os11g0559200	LOC_Os11g35500	immunity	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	To determine if the predicted NLS is required for XA21-mediated immunity in planta, we generated transgenic plants overexpressing an XA21 variant carrying the NLS with the same alanine substitutions (Ubi-XA21nls-GFP)
xa21	Os11g0559200	LOC_Os11g35500	Kinase	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	The rice receptor kinase XA21 confers robust resistance to the bacterial pathogen Xanthomonas oryzaepv
xa21	Os11g0559200	LOC_Os11g35500	receptor kinase	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	The rice receptor kinase XA21 confers robust resistance to the bacterial pathogen Xanthomonas oryzaepv
xa21	Os11g0559200	LOC_Os11g35500	pathogen	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	The rice receptor kinase XA21 confers robust resistance to the bacterial pathogen Xanthomonas oryzaepv
xa21	Os11g0559200	LOC_Os11g35500	immunity	Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor.	The rice immune receptor XA21 is activated by the sulfated microbial peptide required for activation of XA21-mediated immunity X (RaxX) produced by Xanthomonas oryzae pv
xa21	Os11g0559200	LOC_Os11g35500	seedlings	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 Here we demonstrate that the rice immune sensor XA21 promotes survival of rice seedlings during dehydration stress
xa21	Os11g0559200	LOC_Os11g35500	xylem	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 XA21 expression increases deposition of lignin and cellulose in the xylem vessels and their surrounding cells
xa21	Os11g0559200	LOC_Os11g35500	xylem	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 Inhibition of aquaporin water channels by mercuric chloride eliminates XA21-mediated dehydration survival, suggesting that XA21 enables plant survival during drought, probably by protecting xylem functionality
xa21	Os11g0559200	LOC_Os11g35500	growth	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought
xa21	Os11g0559200	LOC_Os11g35500	growth	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 In contrast to prevailing observations of stress tolerance genes, XA21 is also capable of enhancing rice growth during moderate drought
xa21	Os11g0559200	LOC_Os11g35500	growth	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 Thus, XA21 acts as a mediator for stress protection and plant growth under water-limiting conditions
xa21	Os11g0559200	LOC_Os11g35500	drought	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought
xa21	Os11g0559200	LOC_Os11g35500	drought	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 In contrast to prevailing observations of stress tolerance genes, XA21 is also capable of enhancing rice growth during moderate drought
xa21	Os11g0559200	LOC_Os11g35500	tolerance	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 In contrast to prevailing observations of stress tolerance genes, XA21 is also capable of enhancing rice growth during moderate drought
xa21	Os11g0559200	LOC_Os11g35500	stress	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 Here we demonstrate that the rice immune sensor XA21 promotes survival of rice seedlings during dehydration stress
xa21	Os11g0559200	LOC_Os11g35500	stress	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 In contrast to prevailing observations of stress tolerance genes, XA21 is also capable of enhancing rice growth during moderate drought
xa21	Os11g0559200	LOC_Os11g35500	stress	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 Thus, XA21 acts as a mediator for stress protection and plant growth under water-limiting conditions
xa21	Os11g0559200	LOC_Os11g35500	plant growth	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought
xa21	Os11g0559200	LOC_Os11g35500	plant growth	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 Thus, XA21 acts as a mediator for stress protection and plant growth under water-limiting conditions
xa21	Os11g0559200	LOC_Os11g35500	cellulose	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 XA21 expression increases deposition of lignin and cellulose in the xylem vessels and their surrounding cells
xa21	Os11g0559200	LOC_Os11g35500	lignin	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 XA21 expression increases deposition of lignin and cellulose in the xylem vessels and their surrounding cells
xa21	Os11g0559200	LOC_Os11g35500	stress tolerance	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 In contrast to prevailing observations of stress tolerance genes, XA21 is also capable of enhancing rice growth during moderate drought
xa21	Os11g0559200	LOC_Os11g35500	aquaporin water channel	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought	 Inhibition of aquaporin water channels by mercuric chloride eliminates XA21-mediated dehydration survival, suggesting that XA21 enables plant survival during drought, probably by protecting xylem functionality
xa21	Os11g0559200	LOC_Os11g35500	resistance	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
xa21	Os11g0559200	LOC_Os11g35500	sheath	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
xa21	Os11g0559200	LOC_Os11g35500	blight	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
xa21	Os11g0559200	LOC_Os11g35500	bacterial blight	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice	 In BC3F3 generation, the improved pyramided lines carrying a total of seven genes/QTLs (xa5 + xa13 + Xa21 + Pi54 + qSBR7-1 + qSBR11-1 + qSBR11-2) were selected through molecular and phenotypic assay, and these were evaluated for resistance against bacterial blight, blast, and sheath blight pathogens under greenhouse conditions
xa21	Os11g0559200	LOC_Os11g35500	immunity	Plant immunity: Rice XA21-mediated resistance to bacterial infection.	 We focus on knowledge gained from studies of the rice XA21 immune receptor that recognizes RaxX (required for activation of XA21 mediated immunity X), a sulfated microbial peptide secreted by the gram-negative bacterium Xanthomonas oryzae pv
XA23	None	None	R protein	XA23 is an executor R protein and confers broad-spectrum disease resistance in rice	XA23 is an executor R protein and confers broad-spectrum disease resistance in rice
XA23	None	None	disease resistance	XA23 is an executor R protein and confers broad-spectrum disease resistance in rice	XA23 is an executor R protein and confers broad-spectrum disease resistance in rice
XA23	None	None	broad-spectrum disease resistance	XA23 is an executor R protein and confers broad-spectrum disease resistance in rice	XA23 is an executor R protein and confers broad-spectrum disease resistance in rice
XA23	None	None	disease	XA23 is an executor R protein and confers broad-spectrum disease resistance in rice	XA23 is an executor R protein and confers broad-spectrum disease resistance in rice
XA23	None	None	bacterial blight	XA23 is an executor R protein and confers broad-spectrum disease resistance in rice	We adopted a map-based cloning approach and TALE-based technology to isolate and characterize Xa23, a new executor R gene derived from the wild rice (Oryza rufipogon) that confers an extremely broad spectrum of resistance to bacterial blight caused by Xanthomonas oryzae pv. oryzae (Xoo).
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	resistant	A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice	Transformation of the dominant Xa25 into a resistant rice line carrying the recessive xa25 abolished its resistance to PXO339
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	blight	New gene for bacterial blight resistance in rice located on chromosome 12 identified from minghui 63, an elite restorer line	A new dominant gene for bacterial blight resistance in rice, Xa25(t), was identified from Minghui 63, a restorer line for a number of rice hybrids that are widely cultivated in China
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	growth	A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice	The xa25, localized in the centromeric region of chromosome 12, mediates race-specific resistance to Xoo strain PXO339 at both seedling and adult stages by inhibiting Xoo growth
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	bacterial blight	New gene for bacterial blight resistance in rice located on chromosome 12 identified from minghui 63, an elite restorer line	A new dominant gene for bacterial blight resistance in rice, Xa25(t), was identified from Minghui 63, a restorer line for a number of rice hybrids that are widely cultivated in China
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	seedling	A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice	The xa25, localized in the centromeric region of chromosome 12, mediates race-specific resistance to Xoo strain PXO339 at both seedling and adult stages by inhibiting Xoo growth
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	xoo	A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice	Here we report the characterization of another recessive resistance gene, xa25, for Xoo resistance
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	xoo	A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice	The xa25, localized in the centromeric region of chromosome 12, mediates race-specific resistance to Xoo strain PXO339 at both seedling and adult stages by inhibiting Xoo growth
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	xoo	A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice	The expression of dominant Xa25 but not recessive xa25 was rapidly induced by PXO339 but not other Xoo strain infections
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	resistance	Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae.	Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae.
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	resistance	Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae.	In this study, we identified candidate resistance alleles by mining a rice diversity panel for mutations in the promoter of OsSWEET13 and OsSWEET14, which are direct targets of three major TALEs PthXo2, PthXo3 and AvrXa7
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	transcription factor	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Transactivation analyses showed that an abscisic acid (ABA)-responsive transcription factor OsbZIP72 directly binds to the promoters of OsSWEET13 and OsSWEET15 and activates their expression
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	transcription factor	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Taken together, the results showed that the higher expressions of OsSWEET13 and OsSWEET15 genes, induced by binding of an ABA-responsive transcription factor OsbZIP72 to the promoters, potentially modulate sucrose transport and distribution in response to the abiotic stresses
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	drought	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	salt	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	abiotic stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Expression analyses of SWEET genes and histochemical analysis of glucuronidase-reporter transgenic plants suggested that OsSWEET13 and OsSWEET15 are major SWEET transporters regulating the sucrose transport and levels in response to the abiotic stresses
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	abiotic stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Taken together, the results showed that the higher expressions of OsSWEET13 and OsSWEET15 genes, induced by binding of an ABA-responsive transcription factor OsbZIP72 to the promoters, potentially modulate sucrose transport and distribution in response to the abiotic stresses
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	salt stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	biotic stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Expression analyses of SWEET genes and histochemical analysis of glucuronidase-reporter transgenic plants suggested that OsSWEET13 and OsSWEET15 are major SWEET transporters regulating the sucrose transport and levels in response to the abiotic stresses
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	biotic stress	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Taken together, the results showed that the higher expressions of OsSWEET13 and OsSWEET15 genes, induced by binding of an ABA-responsive transcription factor OsbZIP72 to the promoters, potentially modulate sucrose transport and distribution in response to the abiotic stresses
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	abscisic acid	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Transactivation analyses showed that an abscisic acid (ABA)-responsive transcription factor OsbZIP72 directly binds to the promoters of OsSWEET13 and OsSWEET15 and activates their expression
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	sucrose	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	sucrose	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Expression analyses of SWEET genes and histochemical analysis of glucuronidase-reporter transgenic plants suggested that OsSWEET13 and OsSWEET15 are major SWEET transporters regulating the sucrose transport and levels in response to the abiotic stresses
Xa25|OsSWEET13	Os12g0476200	LOC_Os12g29220	sucrose	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice	Taken together, the results showed that the higher expressions of OsSWEET13 and OsSWEET15 genes, induced by binding of an ABA-responsive transcription factor OsbZIP72 to the promoters, potentially modulate sucrose transport and distribution in response to the abiotic stresses
Xa26|Xa3	None	LOC_Os11g47210	disease resistance	Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice	Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice
Xa26|Xa3	None	LOC_Os11g47210	blight	Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice	The function of bacterial-blight resistance gene Xa3/Xa26 in rice is influenced by genetic background; the Oryza sativa L
Xa26|Xa3	None	LOC_Os11g47210	bacterial blight	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26	Xa3 is genetically tightly linked to Xa26, another gene for bacterial blight resistance
Xa26|Xa3	None	LOC_Os11g47210	bacterial blight	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26
Xa26|Xa3	None	LOC_Os11g47210	bacterial blight	Genetic and physical mapping of a new gene for bacterial blight resistance in rice	The Xa26( t) locus is tightly linked to another bacterial blight resistance gene locus, Xa4
Xa26|Xa3	None	LOC_Os11g47210	resistant	Xa26, a gene conferring resistance toXanthomonas oryzaepv.oryzaein rice, encodes an LRR receptor kinase-like protein	Sequence analysis revealed that IRBB3 and Zhachanglong lines that are resistant to a broad range of Xoo strains, also carry Xa26
Xa26|Xa3	None	LOC_Os11g47210	disease	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	BACKGROUND: Rice Xa3/Xa26 disease-resistance gene encodes a leucine-rich repeat (LRR) receptor kinase-type protein against Xanthomonas oryzae pv
Xa26|Xa3	None	LOC_Os11g47210	disease	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	The RKe-involved temperature-related pathway and Xa3/Xa26-mediated disease-resistance pathway may partially overlap
Xa26|Xa3	None	LOC_Os11g47210	disease	The expression pattern of a rice disease resistance gene xa3/xa26 is differentially regulated by the genetic backgrounds and developmental stages that influence its function	The expression pattern of a rice disease resistance gene xa3/xa26 is differentially regulated by the genetic backgrounds and developmental stages that influence its function
Xa26|Xa3	None	LOC_Os11g47210	temperature	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	The RKe-involved temperature-related pathway and Xa3/Xa26-mediated disease-resistance pathway may partially overlap
Xa26|Xa3	None	LOC_Os11g47210	disease resistance	The expression pattern of a rice disease resistance gene xa3/xa26 is differentially regulated by the genetic backgrounds and developmental stages that influence its function	The expression pattern of a rice disease resistance gene xa3/xa26 is differentially regulated by the genetic backgrounds and developmental stages that influence its function
Xa26|Xa3	None	LOC_Os11g47210	disease	Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice	Some F(2) individuals showed significantly increased Xa3/Xa26 transcripts, but the increased transcripts did not completely correlate with the reduced disease in this population
Xa26|Xa3	None	LOC_Os11g47210	disease	Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice	Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice
Xa26|Xa3	None	LOC_Os11g47210	disease	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26	Xa3-mediated resistance for rice bacterial blight, one of the most devastating rice diseases worldwide, is influenced by genetic background
Xa26|Xa3	None	LOC_Os11g47210	bacterial blight	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26	Xa3-mediated resistance for rice bacterial blight, one of the most devastating rice diseases worldwide, is influenced by genetic background
Xa26|Xa3	None	LOC_Os11g47210	disease resistance	Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice	The rice disease resistance (R) gene Xa3/Xa26 (having also been named Xa3 and Xa26) against Xanthomonas oryzae pv
Xa26|Xa3	None	LOC_Os11g47210	blight	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26	Xa3-mediated resistance for rice bacterial blight, one of the most devastating rice diseases worldwide, is influenced by genetic background
Xa26|Xa3	None	LOC_Os11g47210	blight	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26	Xa3 is genetically tightly linked to Xa26, another gene for bacterial blight resistance
Xa26|Xa3	None	LOC_Os11g47210	blight	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26
Xa26|Xa3	None	LOC_Os11g47210	xoo	Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice	Xa3/Xa26-2 and Xa3/Xa26-3 conferred resistance to 16 of the 18 Xoo strains examined
Xa26|Xa3	None	LOC_Os11g47210	xoo	Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice	Transgenic plants carrying a single copy of Xa3/Xa26, Xa3/Xa26-2, or Xa3/Xa26-3, in the same genetic background, showed a similar resistance spectrum to a set of Xoo strains, although plants carrying Xa3/Xa26-2 or Xa3/Xa26-3 showed lower resistance levels than the plants carrying Xa3/Xa26
Xa26|Xa3	None	LOC_Os11g47210	leaf	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26	Phenotypic comparison showed that all the rice lines carrying either Xa3 or Xa26 developed dark brown deposition at the border between the lesion caused by incompatible-pathogen infection and health leaf tissue, while other rice lines did not show this dark brown deposition in either incompatible or compatible interactions
Xa26|Xa3	None	LOC_Os11g47210	blight	Genetic and physical mapping of a new gene for bacterial blight resistance in rice	The Xa26( t) locus is tightly linked to another bacterial blight resistance gene locus, Xa4
Xa26|Xa3	None	LOC_Os11g47210	seedling	The expression pattern of a rice disease resistance gene xa3/xa26 is differentially regulated by the genetic backgrounds and developmental stages that influence its function	Xa3 expression gradually increases from early seedling stage to adult stage
Xa26|Xa3	None	LOC_Os11g47210	xoo	Xa26, a gene conferring resistance toXanthomonas oryzaepv.oryzaein rice, encodes an LRR receptor kinase-like protein	A rice gene, Xa26, conferring resistance against Xoo at both seedling and adult stages was isolated by map-based cloning strategies from the rice cultivar Minghui 63
Xa26|Xa3	None	LOC_Os11g47210	xoo	Xa26, a gene conferring resistance toXanthomonas oryzaepv.oryzaein rice, encodes an LRR receptor kinase-like protein	Sequence analysis revealed that IRBB3 and Zhachanglong lines that are resistant to a broad range of Xoo strains, also carry Xa26
Xa26|Xa3	None	LOC_Os11g47210	seedling	Genetic and physical mapping of a new gene for bacterial blight resistance in rice	A new dominant gene against a Chinese Xoo strain JL691 in both the seedling and adult stages was identified in Minghui 63 and designated as Xa26( t)
Xa26|Xa3	None	LOC_Os11g47210	growth	The expression pattern of a rice disease resistance gene xa3/xa26 is differentially regulated by the genetic backgrounds and developmental stages that influence its function	, further reduced lesion length), and whole-growth-stage resistance compared to the indica rice; this enhanced resistance was associated with an increased expression of Xa3 throughout the growth stages in the japonica plants, which resulted in enhanced expression of defense-responsive genes
Xa26|Xa3	None	LOC_Os11g47210	seedling	Xa26, a gene conferring resistance toXanthomonas oryzaepv.oryzaein rice, encodes an LRR receptor kinase-like protein	A rice gene, Xa26, conferring resistance against Xoo at both seedling and adult stages was isolated by map-based cloning strategies from the rice cultivar Minghui 63
Xa26|Xa3	None	LOC_Os11g47210	seedling	Xa26, a gene conferring resistance toXanthomonas oryzaepv.oryzaein rice, encodes an LRR receptor kinase-like protein	Moreover, transgenic plants carrying Xa26 showed enhanced resistance compared with the donor line of the gene in both seedling and adult stages
Xa26|Xa3	None	LOC_Os11g47210	xoo	Genetic and physical mapping of a new gene for bacterial blight resistance in rice	A new dominant gene against a Chinese Xoo strain JL691 in both the seedling and adult stages was identified in Minghui 63 and designated as Xa26( t)
Xa26|Xa3	None	LOC_Os11g47210	disease	Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice	The rice disease resistance (R) gene Xa3/Xa26 (having also been named Xa3 and Xa26) against Xanthomonas oryzae pv
Xa26|Xa3	None	LOC_Os11g47210	defense	The expression pattern of a rice disease resistance gene xa3/xa26 is differentially regulated by the genetic backgrounds and developmental stages that influence its function	, further reduced lesion length), and whole-growth-stage resistance compared to the indica rice; this enhanced resistance was associated with an increased expression of Xa3 throughout the growth stages in the japonica plants, which resulted in enhanced expression of defense-responsive genes
Xa26|Xa3	None	LOC_Os11g47210	resistance	The Rice Xa3 Gene Confers Resistance to Xanthomonas oryzae pv. oryzae in the Model Rice Kitaake Genetic Background.	The Rice Xa3 Gene Confers Resistance to Xanthomonas oryzae pv. oryzae in the Model Rice Kitaake Genetic Background.
Xa26|Xa3	None	LOC_Os11g47210	resistance	The Rice Xa3 Gene Confers Resistance to Xanthomonas oryzae pv. oryzae in the Model Rice Kitaake Genetic Background.	In this manuscript we demonstrate that Kitaake expressing Xa3 confers resistance to Xoo strain PXO79 and that the stress-related marker genes PR10b and KO5 are upregulated in Xoo-infected Xa3 rice leaves
Xa26|Xa3	None	LOC_Os11g47210	immunity	The Rice Xa3 Gene Confers Resistance to Xanthomonas oryzae pv. oryzae in the Model Rice Kitaake Genetic Background.	Furthermore, the presence of Kitaake rice carrying Xa3 will facilitate genetic research to study the XA3-mediated immunity
Xa26|Xa3	None	LOC_Os11g47210	xoo	The Rice Xa3 Gene Confers Resistance to Xanthomonas oryzae pv. oryzae in the Model Rice Kitaake Genetic Background.	In this manuscript we demonstrate that Kitaake expressing Xa3 confers resistance to Xoo strain PXO79 and that the stress-related marker genes PR10b and KO5 are upregulated in Xoo-infected Xa3 rice leaves
Xa26|Xa3	None	LOC_Os11g47210	receptor kinase	The Rice Xa3 Gene Confers Resistance to Xanthomonas oryzae pv. oryzae in the Model Rice Kitaake Genetic Background.	The rice XA21 and XA3 pattern receptor kinases, derived from Oryza longistaminata and an Oryza
Xa27	None	None	resistant	R gene expression induced by a type-III effector triggers disease resistance in rice	Resistant and susceptible alleles of Xa27 encode identical proteins
Xa27	None	None	resistant	R gene expression induced by a type-III effector triggers disease resistance in rice	However, expression of only the resistant allele occurs when a rice plant is challenged by bacteria harbouring avrXa27, whose product is a nuclear localized type-III effector
Xa27	None	None	cell wall	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	The localization of XA27-green fluorescent protein to the apoplast was verified by detection of the protein on cell walls of leaf sheath and root cells after plasmolysis
Xa27	None	None	cell wall	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	Similarly, XA27-FLAG localizes to xylem vessels and cell walls of xylem parenchyma cells, revealed by immunogold electron microscopy
Xa27	None	None	blight	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L
Xa27	None	None	leaf	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	The localization of XA27-green fluorescent protein to the apoplast was verified by detection of the protein on cell walls of leaf sheath and root cells after plasmolysis
Xa27	None	None	root	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	The localization of XA27-green fluorescent protein to the apoplast was verified by detection of the protein on cell walls of leaf sheath and root cells after plasmolysis
Xa27	None	None	blight disease	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives	Xa27 is one of the important R-genes, effective against bacterial blight disease of rice caused by Xanthomonas oryzae pv
Xa27	None	None	bacterial blight	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L
Xa27	None	None	blight disease	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	The rice (Oryza sativa) gene Xa27 confers resistance to Xanthomonas oryzae pv oryzae, the causal agent of bacterial blight disease in rice
Xa27	None	None	blight	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	The rice (Oryza sativa) gene Xa27 confers resistance to Xanthomonas oryzae pv oryzae, the causal agent of bacterial blight disease in rice
Xa27	None	None	blight	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	Initial studies showed that a functional XA27-green fluorescent protein fusion protein accumulated in vascular elements, the host sites where the bacterial blight pathogens multiply
Xa27	None	None	bacterial blight	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives	Xa27 is one of the important R-genes, effective against bacterial blight disease of rice caused by Xanthomonas oryzae pv
Xa27	None	None	bacterial blight	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives
Xa27	None	None	bacterial blight	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	The rice (Oryza sativa) gene Xa27 confers resistance to Xanthomonas oryzae pv oryzae, the causal agent of bacterial blight disease in rice
Xa27	None	None	bacterial blight	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	Initial studies showed that a functional XA27-green fluorescent protein fusion protein accumulated in vascular elements, the host sites where the bacterial blight pathogens multiply
Xa27	None	None	disease	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L	We performed disease evaluation with an Xa27(t) near-isogenic line, IRBB27, testing 35 Xoo strains collected from 11 countries
Xa27	None	None	sheath	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	The localization of XA27-green fluorescent protein to the apoplast was verified by detection of the protein on cell walls of leaf sheath and root cells after plasmolysis
Xa27	None	None	disease	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives	Xa27 is one of the important R-genes, effective against bacterial blight disease of rice caused by Xanthomonas oryzae pv
Xa27	None	None	blight	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives	Xa27 is one of the important R-genes, effective against bacterial blight disease of rice caused by Xanthomonas oryzae pv
Xa27	None	None	blight	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives
Xa27	None	None	disease	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	The rice (Oryza sativa) gene Xa27 confers resistance to Xanthomonas oryzae pv oryzae, the causal agent of bacterial blight disease in rice
Xa27	None	None	xylem	XA27 depends on an amino-terminal signal-anchor-like sequence to localize to the apoplast for resistance to Xanthomonas oryzae pv oryzae	Similarly, XA27-FLAG localizes to xylem vessels and cell walls of xylem parenchyma cells, revealed by immunogold electron microscopy
Xa27	None	None	xoo	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L	We performed disease evaluation with an Xa27(t) near-isogenic line, IRBB27, testing 35 Xoo strains collected from 11 countries
Xa4	None	None	resistance	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	The major disease resistance gene Xa4 confers race-specific durable resistance against Xanthomonas oryzae pv
Xa4	None	None	resistance	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	Although Xa4 has been one of the most widely exploited resistance genes in rice production worldwide, its molecular nature remains unknown
Xa4	None	None	resistance	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	Strengthening of the cell wall by Xa4 enhances resistance to bacterial infection, and also increases mechanical strength of the culm with slightly reduced plant height, which may improve lodging resistance of the rice plant
Xa4	None	None	disease	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	The major disease resistance gene Xa4 confers race-specific durable resistance against Xanthomonas oryzae pv
Xa4	None	None	disease resistance	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	The major disease resistance gene Xa4 confers race-specific durable resistance against Xanthomonas oryzae pv
Xa4	None	None	culm	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	Strengthening of the cell wall by Xa4 enhances resistance to bacterial infection, and also increases mechanical strength of the culm with slightly reduced plant height, which may improve lodging resistance of the rice plant
Xa4	None	None	cell wall	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	Strengthening of the cell wall by Xa4 enhances resistance to bacterial infection, and also increases mechanical strength of the culm with slightly reduced plant height, which may improve lodging resistance of the rice plant
Xa4	None	None	lodging	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	Strengthening of the cell wall by Xa4 enhances resistance to bacterial infection, and also increases mechanical strength of the culm with slightly reduced plant height, which may improve lodging resistance of the rice plant
Xa4	None	None	lodging resistance	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	Strengthening of the cell wall by Xa4 enhances resistance to bacterial infection, and also increases mechanical strength of the culm with slightly reduced plant height, which may improve lodging resistance of the rice plant
Xa4	None	None	breeding	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	The simultaneous improvement of multiple agronomic traits conferred by Xa4 may account for its widespread and lasting utilization in rice breeding programmes globally
Xa4	None	None	plant height	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	Strengthening of the cell wall by Xa4 enhances resistance to bacterial infection, and also increases mechanical strength of the culm with slightly reduced plant height, which may improve lodging resistance of the rice plant
Xa4	None	None	temperature	Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight.	The pyramided line IRBB67 showed no differences in lesion length between both temperature regimes, demonstrating that non-effectiveness of Xa4 at high temperature did not affect IRBB67 resistance
Xa4	None	None	temperature	Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight.	Moreover, Xa4 complements Xa7 resistance with no Xoo spread in planta beyond the symptomatic area under both temperature regimes in IRBB67
Xa4	None	None	resistance	Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight.	The pyramided line IRBB67 showed no differences in lesion length between both temperature regimes, demonstrating that non-effectiveness of Xa4 at high temperature did not affect IRBB67 resistance
Xa4	None	None	resistance	Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight.	Moreover, Xa4 complements Xa7 resistance with no Xoo spread in planta beyond the symptomatic area under both temperature regimes in IRBB67
Xa4	None	None	xoo	Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight.	Moreover, Xa4 complements Xa7 resistance with no Xoo spread in planta beyond the symptomatic area under both temperature regimes in IRBB67
Xa4	None	None	lesion	Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight.	The pyramided line IRBB67 showed no differences in lesion length between both temperature regimes, demonstrating that non-effectiveness of Xa4 at high temperature did not affect IRBB67 resistance
Xa46(t)	Os11g0586001|Os11g0586100	LOC_Os11g37540	Xoo pathotypes	Identification of the novel bacterial blight resistance gene Xa46(t) by mapping and expression analysis of the rice mutant H120	Therefore, it is plausible that Xa46(t) confers resistance to all Xoo pathotypes.
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	resistance	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	resistance	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 By contrast, overexpression of Xa47 in the susceptible rice material JG30 increased BB resistance
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	resistance	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 Consequently, Xa47 may have application potential in the genetic improvement of plant disease resistance
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	stress	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 The findings indicate that Xa47 positively regulates the Xoo stress response
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	disease	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	disease	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 Consequently, Xa47 may have application potential in the genetic improvement of plant disease resistance
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	disease resistance	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	disease resistance	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 Consequently, Xa47 may have application potential in the genetic improvement of plant disease resistance
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	blight	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	blight	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 In this study, Xa47, a new bacterial blight R gene encoding a typical NLR, was isolated from G252 rice material, and XA47 was localized in the nucleus and cytoplasm
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	bacterial blight	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	bacterial blight	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 In this study, Xa47, a new bacterial blight R gene encoding a typical NLR, was isolated from G252 rice material, and XA47 was localized in the nucleus and cytoplasm
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	nucleus	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 In this study, Xa47, a new bacterial blight R gene encoding a typical NLR, was isolated from G252 rice material, and XA47 was localized in the nucleus and cytoplasm
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	cytoplasm	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 In this study, Xa47, a new bacterial blight R gene encoding a typical NLR, was isolated from G252 rice material, and XA47 was localized in the nucleus and cytoplasm
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	xoo	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 Compared with the wild-type G252, the knockout mutants of Xa47 was more susceptible to Xoo
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	xoo	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 The findings indicate that Xa47 positively regulates the Xoo stress response
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	stress response	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 The findings indicate that Xa47 positively regulates the Xoo stress response
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	Xoo	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 Compared with the wild-type G252, the knockout mutants of Xa47 was more susceptible to Xoo
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	Xoo	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 The findings indicate that Xa47 positively regulates the Xoo stress response
Xa47	Os11g0688832|Os11g0689000	LOC_Os11g46200	 xoo 	A new NLR disease resistance gene Xa47 confers durable and broad-spectrum resistance to bacterial blight in rice.	 The findings indicate that Xa47 positively regulates the Xoo stress response
Xa5	Os05g0107700	LOC_Os05g01710	bacterial blight	Construction of a BAC contig containing the xa5 locus in rice	The recessive gene xa5 confers resistance to bacterial blight in rice
Xa5	Os05g0107700	LOC_Os05g01710	resistant	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5	Further, one allele of Xa5 is sufficient to promote disease in previously resistant plants; additional copies are not predictive of increased lesion length
Xa5	Os05g0107700	LOC_Os05g01710	bacterial blight	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1	The recessive gene xa5 for resistance to bacterial blight resistance of rice is located on chromosome 5, and evidence based on genetic recombination has been shown to encode a small subunit of the basal transcription factor IIA (Iyer and McCouch in MPMI 17(12):1348-1354, 2004)
Xa5	Os05g0107700	LOC_Os05g01710	bacterial blight	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1	The structural analysis indicates that xa5 and Xa5 potentially retain their basic transcription factor function, which, in turn, may mediate the novel pathway for bacterial blight resistance and susceptibility, respectively
Xa5	Os05g0107700	LOC_Os05g01710	bacterial blight	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1
Xa5	Os05g0107700	LOC_Os05g01710	disease resistance	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5
Xa5	Os05g0107700	LOC_Os05g01710	bacterial blight	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5	How xa5 functions in bacterial blight resistance is not well understood, and its recessive gene action is disputed
Xa5	Os05g0107700	LOC_Os05g01710	bacterial blight	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5
Xa5	Os05g0107700	LOC_Os05g01710	blight	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1	The recessive gene xa5 for resistance to bacterial blight resistance of rice is located on chromosome 5, and evidence based on genetic recombination has been shown to encode a small subunit of the basal transcription factor IIA (Iyer and McCouch in MPMI 17(12):1348-1354, 2004)
Xa5	Os05g0107700	LOC_Os05g01710	blight	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1	The structural analysis indicates that xa5 and Xa5 potentially retain their basic transcription factor function, which, in turn, may mediate the novel pathway for bacterial blight resistance and susceptibility, respectively
Xa5	Os05g0107700	LOC_Os05g01710	blight	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1
Xa5	Os05g0107700	LOC_Os05g01710	blight disease	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5
Xa5	Os05g0107700	LOC_Os05g01710	bacterial blight	High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.)	The xa5 resistance gene from rice provides recessive, race-specific resistance to bacterial blight of rice caused by the pathogen Xanthomonas oryzae pv oryzae
Xa5	Os05g0107700	LOC_Os05g01710	bacterial blight	High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.)	High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.)
Xa5	Os05g0107700	LOC_Os05g01710	blight	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5	How xa5 functions in bacterial blight resistance is not well understood, and its recessive gene action is disputed
Xa5	Os05g0107700	LOC_Os05g01710	blight	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5
Xa5	Os05g0107700	LOC_Os05g01710	blight	Construction of a BAC contig containing the xa5 locus in rice	The recessive gene xa5 confers resistance to bacterial blight in rice
Xa5	Os05g0107700	LOC_Os05g01710	transcription factor	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1	The recessive gene xa5 for resistance to bacterial blight resistance of rice is located on chromosome 5, and evidence based on genetic recombination has been shown to encode a small subunit of the basal transcription factor IIA (Iyer and McCouch in MPMI 17(12):1348-1354, 2004)
Xa5	Os05g0107700	LOC_Os05g01710	transcription factor	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1	The structural analysis indicates that xa5 and Xa5 potentially retain their basic transcription factor function, which, in turn, may mediate the novel pathway for bacterial blight resistance and susceptibility, respectively
Xa5	Os05g0107700	LOC_Os05g01710	blight	High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.)	The xa5 resistance gene from rice provides recessive, race-specific resistance to bacterial blight of rice caused by the pathogen Xanthomonas oryzae pv oryzae
Xa5	Os05g0107700	LOC_Os05g01710	blight	High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.)	High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.)
Xa5	Os05g0107700	LOC_Os05g01710	disease	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5	Further, one allele of Xa5 is sufficient to promote disease in previously resistant plants; additional copies are not predictive of increased lesion length
Xa5	Os05g0107700	LOC_Os05g01710	disease	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5	Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5
Xa5	Os05g0107700	LOC_Os05g01710	resistance	An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain	An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain
Xa5	Os05g0107700	LOC_Os05g01710	blight	An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain	An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain
Xa5	Os05g0107700	LOC_Os05g01710	bacterial blight	An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain	An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain
Xa5	Os05g0107700	LOC_Os05g01710	pathogen	An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain	An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain
XB15|PP2C	Os03g0821300	LOC_Os03g60650	cell death	Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity	Xb15 mutants display a severe cell death phenotype, induction of pathogenesis-related genes, and enhanced XA21-mediated resistance
XB15|PP2C	Os03g0821300	LOC_Os03g60650	cell death	Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity	Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity
XB21	Os12g0548200	LOC_Os12g36180	resistance	Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae.	Overexpression of XB21 in rice variety Kitaake and a Kitaake transgenic line expressing XA21 confers a necrotic lesion phenotype and enhances resistance to Xoo
XB21	Os12g0548200	LOC_Os12g36180	cell death	Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae.	These results indicate that XB21 plays a role in the plant immune response and in regulation of cell death
XB21	Os12g0548200	LOC_Os12g36180	immune response	Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae.	These results indicate that XB21 plays a role in the plant immune response and in regulation of cell death
XB21	Os12g0548200	LOC_Os12g36180	lesion	Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae.	Overexpression of XB21 in rice variety Kitaake and a Kitaake transgenic line expressing XA21 confers a necrotic lesion phenotype and enhances resistance to Xoo
XB24	Os01g0771200	LOC_Os01g56470	immunity	An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity	Rice lines silenced for Xb24 display enhanced XA21-mediated immunity, whereas rice lines overexpressing XB24 are compromised for immunity.
XB24	Os01g0771200	LOC_Os01g56470	resistance	An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity	Silencing of Xb24 Enhances Xa21-Mediated Resistance.
XB24	Os01g0771200	LOC_Os01g56470	resistance	An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity	Our initial results indicated that silencing of Xb24 enhanced resistance
XB24	Os01g0771200	LOC_Os01g56470	resistance	An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity	These results demonstrate that silencing of Xb24 expression enhances XA21-mediated disease resistance.
XB24	Os01g0771200	LOC_Os01g56470	disease resistance	An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity	These results demonstrate that silencing of Xb24 expression enhances XA21-mediated disease resistance.
XB24	Os01g0771200	LOC_Os01g56470	defense response	An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity	Thus, we conclude that the ATPase activity of XB24 is essential for XB24 to regulate XA21-mediated defense response.
Xb3	Os05g0112000	LOC_Os05g02130	disease resistance	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance
Xb3	Os05g0112000	LOC_Os05g02130	resistance	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance
Xb3	Os05g0112000	LOC_Os05g02130	resistance	Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance	These results indicate that Xb3 is necessary for full accumulation of the XA21 protein and for Xa21-mediated resistance.
XBOS252	Os08g0539600	LOC_Os08g42690	XA21 signaling	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance	In addition to XB25, both XBOS251 and XBOS252 interact with XA21KTM in yeast, suggesting a possibility that they might also be involved in XA21 signaling.
XIAO	Os04g0576900	LOC_Os04g48760	erect	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	Here we identified a rice T-DNA insertion mutant for organ size, referred to as xiao, that displays dwarfism and erect leaves, typical BR-related phenotypes, together with reduced seed setting
XIAO	Os04g0576900	LOC_Os04g48760	organ size	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	Here we identified a rice T-DNA insertion mutant for organ size, referred to as xiao, that displays dwarfism and erect leaves, typical BR-related phenotypes, together with reduced seed setting
XIAO	Os04g0576900	LOC_Os04g48760	organ size	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	The small stature of the xiao mutant resulted from reduced organ sizes due to decreased cell numbers resulting from reduced cell division rate, as supported by the observed co-expression of XIAO with a number of genes involved in cell cycling
XIAO	Os04g0576900	LOC_Os04g48760	organ size	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice
XIAO	Os04g0576900	LOC_Os04g48760	homeostasis	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice
XIAO	Os04g0576900	LOC_Os04g48760	BR	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	The xiao mutant displayed a tissue-specific enhanced BR response and greatly reduced BR contents at the whole-plant level
XIAO	Os04g0576900	LOC_Os04g48760	BR	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	These results indicated that XIAO is a regulator of BR signaling and cell division
XIAO	Os04g0576900	LOC_Os04g48760	BR signaling	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	These results indicated that XIAO is a regulator of BR signaling and cell division
XIAO	Os04g0576900	LOC_Os04g48760	brassinosteroid	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice
XIAO	Os04g0576900	LOC_Os04g48760	cell division	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	The small stature of the xiao mutant resulted from reduced organ sizes due to decreased cell numbers resulting from reduced cell division rate, as supported by the observed co-expression of XIAO with a number of genes involved in cell cycling
XIAO	Os04g0576900	LOC_Os04g48760	cell division	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	These results indicated that XIAO is a regulator of BR signaling and cell division
XIAO	Os04g0576900	LOC_Os04g48760	dwarf	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	Here we identified a rice T-DNA insertion mutant for organ size, referred to as xiao, that displays dwarfism and erect leaves, typical BR-related phenotypes, together with reduced seed setting
XIAO	Os04g0576900	LOC_Os04g48760	growth	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	Thus, XIAO may provide a possible connection between BRs and cell-cycle regulation in controlling organ growth
XIAO	Os04g0576900	LOC_Os04g48760	seed	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	Here we identified a rice T-DNA insertion mutant for organ size, referred to as xiao, that displays dwarfism and erect leaves, typical BR-related phenotypes, together with reduced seed setting
XIK1	Os02g0553000	LOC_Os02g34790	resistance	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	By using RNA interference (RNAi), we silenced the expression of XIK1 in rice with Xa21 and found that reduced expression of XIK1 compromised disease resistance mediated by XA21
XIK1	Os02g0553000	LOC_Os02g34790	resistance	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	Our study reveals that the LRR-RLK gene XIK1 is Xoo-responsive and positively regulates Xa21-mediated disease resistance
XIK1	Os02g0553000	LOC_Os02g34790	development	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	Expression pattern analysis reveals that XIK1 is preferentially expressed in reproductive leaves and panicles, and that expression is associated with plant development
XIK1	Os02g0553000	LOC_Os02g34790	disease	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	By using RNA interference (RNAi), we silenced the expression of XIK1 in rice with Xa21 and found that reduced expression of XIK1 compromised disease resistance mediated by XA21
XIK1	Os02g0553000	LOC_Os02g34790	disease	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	Our study reveals that the LRR-RLK gene XIK1 is Xoo-responsive and positively regulates Xa21-mediated disease resistance
XIK1	Os02g0553000	LOC_Os02g34790	disease resistance	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	By using RNA interference (RNAi), we silenced the expression of XIK1 in rice with Xa21 and found that reduced expression of XIK1 compromised disease resistance mediated by XA21
XIK1	Os02g0553000	LOC_Os02g34790	disease resistance	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	Our study reveals that the LRR-RLK gene XIK1 is Xoo-responsive and positively regulates Xa21-mediated disease resistance
XIK1	Os02g0553000	LOC_Os02g34790	reproductive	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	Expression pattern analysis reveals that XIK1 is preferentially expressed in reproductive leaves and panicles, and that expression is associated with plant development
XIK1	Os02g0553000	LOC_Os02g34790	immunity	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	In addition, we found that the expression of the downstream marker genes of pathogen associated molecular pattern (PAMP) triggered immunity (PTI) in rice was compromised in Xa21 plants silenced for XIK1
XIK1	Os02g0553000	LOC_Os02g34790	plant development	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	Expression pattern analysis reveals that XIK1 is preferentially expressed in reproductive leaves and panicles, and that expression is associated with plant development
XRCC3	Os02g0562100	LOC_Os02g35450	growth	XRCC3 is essential for proper double-strand break repair and homologous recombination in rice meiosis.	The rice xrcc3 mutant exhibited normal vegetative growth but complete male and female sterility
XRCC3	Os02g0562100	LOC_Os02g35450	sterility	XRCC3 is essential for proper double-strand break repair and homologous recombination in rice meiosis.	The rice xrcc3 mutant exhibited normal vegetative growth but complete male and female sterility
XRCC3	Os02g0562100	LOC_Os02g35450	vegetative	XRCC3 is essential for proper double-strand break repair and homologous recombination in rice meiosis.	The rice xrcc3 mutant exhibited normal vegetative growth but complete male and female sterility
XRCC3	Os02g0562100	LOC_Os02g35450	meiosis	XRCC3 is essential for proper double-strand break repair and homologous recombination in rice meiosis.	Taken together, the results suggest that XRCC3 plays critical roles in both DSB repair and homologous chromosome recombination during rice meiosis
XRCC3	Os02g0562100	LOC_Os02g35450	male sterility	XRCC3 is essential for proper double-strand break repair and homologous recombination in rice meiosis.	The rice xrcc3 mutant exhibited normal vegetative growth but complete male and female sterility
XYH	Os05g0298700	LOC_Os05g23350	seed	Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice	We validated the stage-specificity of regulatory regions of three panicle-specific genes, OsAGO3, OsSub42, and RTS, and an early seed-specific gene, XYH, in transgenic rice
XYH	Os05g0298700	LOC_Os05g23350	panicle	Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice	We validated the stage-specificity of regulatory regions of three panicle-specific genes, OsAGO3, OsSub42, and RTS, and an early seed-specific gene, XYH, in transgenic rice
XYXT1	Os06g0707000	LOC_Os06g49300	sugar	A novel rice xylosyltransferase catalyzes the addition of 2-O-xylosyl side chains onto the xylan backbone.	When expressed in the Arabidopsis gux1/2/3 triple mutant, in which xylan was completely devoid of sugar substitutions, XYXT1 was able to add xylosyl side chains onto xylan
YDA1|SMG2|OsMKKK10	Os04g0559800	LOC_Os04g47240	stomatal density	RNAi-directed downregulation of vacuolar H(+) -ATPase subunit a results in enhanced stomatal aperture and density in rice	Moreover, YDA1, encoding a member of MAPKs involved in the regulation of stomatal development [9], was also significantly down-regulated in all three OsVHA-A-RNAi lines (Figure 10D), suggesting that OsVHA might control the stomatal density via regulating YDA1 expression.
YGL1|OsCHLG	Os05g0349700	LOC_Os05g28200	seedling	A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis	Moreover, the expression of some nuclear genes associated with Chl biosynthesis or chloroplast development was also affected in ygl1 seedlings
YGL1|OsCHLG	Os05g0349700	LOC_Os05g28200	leaf	A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis	In this study, a rice (Oryza Sativa) Chl-deficient mutant, yellow-green leaf1 (ygl1), was isolated, which showed yellow-green leaves in young plants with decreased Chl synthesis, increased level of tetrapyrrole intermediates, and delayed chloroplast development
YGL1|OsCHLG	Os05g0349700	LOC_Os05g28200	chloroplast	A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis	In this study, a rice (Oryza Sativa) Chl-deficient mutant, yellow-green leaf1 (ygl1), was isolated, which showed yellow-green leaves in young plants with decreased Chl synthesis, increased level of tetrapyrrole intermediates, and delayed chloroplast development
YGL1|OsCHLG	Os05g0349700	LOC_Os05g28200	chloroplast	A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis	Moreover, the expression of some nuclear genes associated with Chl biosynthesis or chloroplast development was also affected in ygl1 seedlings
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	leaf	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	 The defective OscpSRP54a (LOC_Os11g05552) was responsible for the pale green leaf phenotype of the viable pale green leaf 14 (pgl14) mutant
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	chloroplast	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	  Conclusion: Our study demonstrated that both OscpSRP54a and OscpSRP54b were essential for normal chloroplast development by interacting with OscpSRP43 in rice
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	chloroplast	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	 OscpSRP54a and OscpSRP54b might play distinct roles in transporting different chloroplast proteins into thylakoids through cpSRP-mediated pathway
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	growth	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	 Both OscpSRP54a and OscpSRP54b were constitutively expressed mainly in shoots and leaves at the vegetative growth stage
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	development	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	  Conclusion: Our study demonstrated that both OscpSRP54a and OscpSRP54b were essential for normal chloroplast development by interacting with OscpSRP43 in rice
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	vegetative	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	 Both OscpSRP54a and OscpSRP54b were constitutively expressed mainly in shoots and leaves at the vegetative growth stage
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	chloroplast development	Chloroplast SRP54s are Essential for Chloroplast Development in Rice	  Conclusion: Our study demonstrated that both OscpSRP54a and OscpSRP54b were essential for normal chloroplast development by interacting with OscpSRP43 in rice
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	leaf	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 Here, we isolated and characterized a thermosensitive yellow-green leaf mutant named tsyl1 (thermosensitive yellow leaf 1) from an ethylmethylsulfone (EMS)-mutagenized pool of rice
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	chloroplast	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 Furthermore, and chloroplast development-related genes was influenced in tsyl1 at different temperatures
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	temperature	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 The expression of tsyl1 was induced by high temperature
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	temperature	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 These results indicated that the TSYL1 gene plays a key role in chlorophyll biosynthesis and is affected by temperature at the transcriptional level
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	panicle	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 At the mature stage of the tsyl1 mutant, the plant height, tiller number, number of spikelets per panicle and 1000 seed weight were decreased significantly compared to those of wild-type plants, but the seed setting rate and panicle length were not
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	tiller	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 At the mature stage of the tsyl1 mutant, the plant height, tiller number, number of spikelets per panicle and 1000 seed weight were decreased significantly compared to those of wild-type plants, but the seed setting rate and panicle length were not
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	seed	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 At the mature stage of the tsyl1 mutant, the plant height, tiller number, number of spikelets per panicle and 1000 seed weight were decreased significantly compared to those of wild-type plants, but the seed setting rate and panicle length were not
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	seed weight	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 At the mature stage of the tsyl1 mutant, the plant height, tiller number, number of spikelets per panicle and 1000 seed weight were decreased significantly compared to those of wild-type plants, but the seed setting rate and panicle length were not
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	plant height	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 At the mature stage of the tsyl1 mutant, the plant height, tiller number, number of spikelets per panicle and 1000 seed weight were decreased significantly compared to those of wild-type plants, but the seed setting rate and panicle length were not
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	chloroplast development	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 Furthermore, and chloroplast development-related genes was influenced in tsyl1 at different temperatures
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	chlorophyll	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 These results indicated that the TSYL1 gene plays a key role in chlorophyll biosynthesis and is affected by temperature at the transcriptional level
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	tiller number	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 At the mature stage of the tsyl1 mutant, the plant height, tiller number, number of spikelets per panicle and 1000 seed weight were decreased significantly compared to those of wild-type plants, but the seed setting rate and panicle length were not
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	panicle length	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 At the mature stage of the tsyl1 mutant, the plant height, tiller number, number of spikelets per panicle and 1000 seed weight were decreased significantly compared to those of wild-type plants, but the seed setting rate and panicle length were not
YGL138(t)|OscpSRP54a|TSYL1	Os11g0153600	LOC_Os11g05552	spikelets per panicle	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	 At the mature stage of the tsyl1 mutant, the plant height, tiller number, number of spikelets per panicle and 1000 seed weight were decreased significantly compared to those of wild-type plants, but the seed setting rate and panicle length were not
YGL18	Os06g0132400	LOC_Os06g04150	leaf	Impaired Magnesium Protoporphyrin IX Methyltransferase (ChlM) Impedes Chlorophyll Synthesis and Plant Growth in Rice.	YGL18 is expressed in green tissues, especially in leaf organs, where it functions in chloroplasts
YGL18	Os06g0132400	LOC_Os06g04150	growth	Impaired Magnesium Protoporphyrin IX Methyltransferase (ChlM) Impedes Chlorophyll Synthesis and Plant Growth in Rice.	The retarded growth of ygl18 mutant plants was caused by the high light intensity
YGL18	Os06g0132400	LOC_Os06g04150	growth	Impaired Magnesium Protoporphyrin IX Methyltransferase (ChlM) Impedes Chlorophyll Synthesis and Plant Growth in Rice.	Based on these results, it is suggested that YGL18 plays essential roles in light-related chlorophyll synthesis and light intensity-involved plant growth
YGL18	Os06g0132400	LOC_Os06g04150	map-based cloning	Impaired Magnesium Protoporphyrin IX Methyltransferase (ChlM) Impedes Chlorophyll Synthesis and Plant Growth in Rice.	Map-based cloning of this mutant identified the YGL18 gene LOC_Os06g04150
YGL18	Os06g0132400	LOC_Os06g04150	plant growth	Impaired Magnesium Protoporphyrin IX Methyltransferase (ChlM) Impedes Chlorophyll Synthesis and Plant Growth in Rice.	Based on these results, it is suggested that YGL18 plays essential roles in light-related chlorophyll synthesis and light intensity-involved plant growth
YGL8|YL2	Os01g0965400	LOC_Os01g73450	leaf	Map-based cloning and functional analysis of YGL8, which controls leaf colour in rice (Oryza sativa).	Map-based cloning results showed that Loc_Os01g73450, encoding a chloroplast-targeted UMP kinase, corresponded to Ygl8 and played an important role in regulating leaf colour in rice (Oryza sativa)
YGL8|YL2	Os01g0965400	LOC_Os01g73450	leaf	Map-based cloning and functional analysis of YGL8, which controls leaf colour in rice (Oryza sativa).	Analysis of the spatial and temporal expression of Ygl8 indicated that it was highly expressed in leaf blades and weakly expressed in other tissues
YGL8|YL2	Os01g0965400	LOC_Os01g73450	growth	Map-based cloning and functional analysis of YGL8, which controls leaf colour in rice (Oryza sativa).	The levels of Chl a, Chl b and total chlorophyll were significantly lower in ygl8 than those in the WT throughout the whole growth period, while no clear change was noted in the Chl a/b ratio
YGL8|YL2	Os01g0965400	LOC_Os01g73450	map-based cloning	Map-based cloning and functional analysis of YGL8, which controls leaf colour in rice (Oryza sativa).	Map-based cloning results showed that Loc_Os01g73450, encoding a chloroplast-targeted UMP kinase, corresponded to Ygl8 and played an important role in regulating leaf colour in rice (Oryza sativa)
YGL8|YL2	Os01g0965400	LOC_Os01g73450	Chl biosynthesis	Map-based cloning and functional analysis of YGL8, which controls leaf colour in rice (Oryza sativa).	Independent of Chl biosynthesis and photosystem, YGL8 may affect the structure and function of chloroplasts grana lamellae by regulating plastid genome encoded thylakoid membrane constitutive gene expression and indirectly influences Chl biosynthesis
YGL8|YL2	Os01g0965400	LOC_Os01g73450	chloroplast	UMP kinase activity is involved in proper chloroplast development in rice.	Chloroplast development was abnormal in the yl2 mutant, possibly due to reduced accumulation of thylakoid membranes and a lack of normal stroma lamellae
YGL8|YL2	Os01g0965400	LOC_Os01g73450	development	UMP kinase activity is involved in proper chloroplast development in rice.	Chloroplast development was abnormal in the yl2 mutant, possibly due to reduced accumulation of thylakoid membranes and a lack of normal stroma lamellae
YGL8|YL2	Os01g0965400	LOC_Os01g73450	Kinase	UMP kinase activity is involved in proper chloroplast development in rice.	Genetic analyses revealed that YL2 encodes a thylakoid membrane-localized protein with significant sequence similarity to UMP kinase proteins in prokaryotes and eukaryotes
YGL8|YL2	Os01g0965400	LOC_Os01g73450	Kinase	UMP kinase activity is involved in proper chloroplast development in rice.	Prokaryotic UMP kinase activity was subsequently confirmed, with YL2 deficiency causing a significant reduction in chlorophyll accumulation and photochemical efficiency
YGL8|YL2	Os01g0965400	LOC_Os01g73450	stroma	UMP kinase activity is involved in proper chloroplast development in rice.	Chloroplast development was abnormal in the yl2 mutant, possibly due to reduced accumulation of thylakoid membranes and a lack of normal stroma lamellae
YGL8|YL2	Os01g0965400	LOC_Os01g73450	chloroplast development	UMP kinase activity is involved in proper chloroplast development in rice.	Chloroplast development was abnormal in the yl2 mutant, possibly due to reduced accumulation of thylakoid membranes and a lack of normal stroma lamellae
YL1|YS83	Os02g0152900	LOC_Os02g05890	chloroplast	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.
YL1|YS83	Os02g0152900	LOC_Os02g05890	chloroplast	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.	The YL1 mutation showed reduced chlorophyll contents, abnormal chloroplast morphology, and decreased photochemical efficiency
YL1|YS83	Os02g0152900	LOC_Os02g05890	chloroplast	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.	Moreover, YL1 deficiency disrupts the expression of genes associated with chloroplast development and photosynthesis
YL1|YS83	Os02g0152900	LOC_Os02g05890	development	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.
YL1|YS83	Os02g0152900	LOC_Os02g05890	development	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.	Moreover, YL1 deficiency disrupts the expression of genes associated with chloroplast development and photosynthesis
YL1|YS83	Os02g0152900	LOC_Os02g05890	photosynthesis	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.	Moreover, YL1 deficiency disrupts the expression of genes associated with chloroplast development and photosynthesis
YL1|YS83	Os02g0152900	LOC_Os02g05890	chloroplast development	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.
YL1|YS83	Os02g0152900	LOC_Os02g05890	chloroplast development	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP Synthase in Rice.	Moreover, YL1 deficiency disrupts the expression of genes associated with chloroplast development and photosynthesis
YL1|YS83	Os02g0152900	LOC_Os02g05890	leaf	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)
YL1|YS83	Os02g0152900	LOC_Os02g05890	leaf	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)	Taken together, we successfully identified a novel yellow-green leaf gene YS83
YL1|YS83	Os02g0152900	LOC_Os02g05890	chloroplast	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)	Gene YS83 was expressed in a wide range of tissues, and its encoded protein was targeted to the chloroplast
YL1|YS83	Os02g0152900	LOC_Os02g05890	seed	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)	6%, respectively, meanwhile its seed setting rate and 1000-grain weight (seed size) were not significantly affected in the mutant, so leaf-color mutant gene ys83 could be used as a trait marker gene in commercial hybrid rice production
YL1|YS83	Os02g0152900	LOC_Os02g05890	map-based cloning	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)
YL1|YS83	Os02g0152900	LOC_Os02g05890	map-based cloning	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)	Map-based cloning and sequencing analysis suggested that the candidate gene was YS83 (LOC_Os02g05890) encoding a protein containing 165 amino acid residues
YL1|YS83	Os02g0152900	LOC_Os02g05890	seed size	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)	6%, respectively, meanwhile its seed setting rate and 1000-grain weight (seed size) were not significantly affected in the mutant, so leaf-color mutant gene ys83 could be used as a trait marker gene in commercial hybrid rice production
YL1|YS83	Os02g0152900	LOC_Os02g05890	grain weight	Map-based cloning and characterization of the novel yellow-green leaf gene ys83 in rice (Oryza sativa)	6%, respectively, meanwhile its seed setting rate and 1000-grain weight (seed size) were not significantly affected in the mutant, so leaf-color mutant gene ys83 could be used as a trait marker gene in commercial hybrid rice production
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	leaf development	Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice	These data suggested that the YLC1 protein may be involved in Chl and lutein accumulation and chloroplast development at early leaf development in rice
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	photosynthesis	Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice	Real-time PCR analyses showed that the expression levels of the genes associated with Chl biosynthesis and photosynthesis were affected in ylc1 mutant at different temperatures
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	leaf	Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice	In this study, we characterized a rice mutant named young leaf chlorosis 1 (ylc1) from a (6)(0)Co-irradiated population
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	leaf	Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice	The Young Leaf Chlorosis 1 (YLC1) gene was isolated via map-based cloning and identified to encode a protein of unknown function belonging to the DUF3353 superfamily
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	leaf	Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice	These data suggested that the YLC1 protein may be involved in Chl and lutein accumulation and chloroplast development at early leaf development in rice
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	chloroplast	Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice	In rice protoplasts, the YLC1 protein displayed a typical chloroplast location pattern
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	chloroplast	Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice	These data suggested that the YLC1 protein may be involved in Chl and lutein accumulation and chloroplast development at early leaf development in rice
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	temperature	Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice	Real-time PCR analyses showed that the expression levels of the genes associated with Chl biosynthesis and photosynthesis were affected in ylc1 mutant at different temperatures
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	seedlings	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Differential protein abundances of OsV5A and OsV5B in rice seedlings at different leaf developmental stages were also revealed
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	seedlings	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Deficiency of OsV5A and OsV5B occurred in pre-emerged and emerging leaves in osv5a seedlings at 22 °C, leading to reduced POR accumulation and chlorophyll content
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	leaf	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Differential protein abundances of OsV5A and OsV5B in rice seedlings at different leaf developmental stages were also revealed
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	leaf	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	OsV5A apparently developed a specialized role for regulating POR abundances at the leaf pre-emergence stage while the same function is performed by OsV5B during leaf emergence and expansion
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	leaf development	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Differential protein abundances of OsV5A and OsV5B in rice seedlings at different leaf developmental stages were also revealed
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	chloroplast	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Both OsV5A and OsV5B are localized in the chloroplast envelope and thylakoid membranes
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	oxidative stress	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	OsV5A and OsV5B interact with two rice PORs (OsPORA and OsPORB) inside chloroplasts and they stabilize OsPORB in vitro under oxidative stress
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	map-based cloning	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Map-based cloning revealed that OsV5A is a J-like protein with four transmembrane domains
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	oxidative	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	OsV5A and OsV5B interact with two rice PORs (OsPORA and OsPORB) inside chloroplasts and they stabilize OsPORB in vitro under oxidative stress
YLC1|OsV5A	Os09g0380200	LOC_Os09g21250	stress	Differential Regulation of Protochlorophyllide Oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	OsV5A and OsV5B interact with two rice PORs (OsPORA and OsPORB) inside chloroplasts and they stabilize OsPORB in vitro under oxidative stress
YLC3	Os02g0686400	LOC_Os02g46130	chloroplast	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.
YLC3	Os02g0686400	LOC_Os02g46130	chloroplast	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	 Moreover, uncharged tRNA-Asp accumulation and phosphorylation of the translation initiation factor eIF2α was detected in the mutant, suggesting that YLC3 regulates the homeostasis of amino acid metabolism and chloroplast thylakoid development through modulation of processes during protein synthesis
YLC3	Os02g0686400	LOC_Os02g46130	development	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.
YLC3	Os02g0686400	LOC_Os02g46130	development	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	 Moreover, uncharged tRNA-Asp accumulation and phosphorylation of the translation initiation factor eIF2α was detected in the mutant, suggesting that YLC3 regulates the homeostasis of amino acid metabolism and chloroplast thylakoid development through modulation of processes during protein synthesis
YLC3	Os02g0686400	LOC_Os02g46130	mitochondria	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	 Map-based cloning identified that YLC3 encodes an aspartyl-tRNA synthetase which is localized in cytosol and mitochondria
YLC3	Os02g0686400	LOC_Os02g46130	map-based cloning	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	 Map-based cloning identified that YLC3 encodes an aspartyl-tRNA synthetase which is localized in cytosol and mitochondria
YLC3	Os02g0686400	LOC_Os02g46130	homeostasis	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.
YLC3	Os02g0686400	LOC_Os02g46130	homeostasis	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	 Moreover, uncharged tRNA-Asp accumulation and phosphorylation of the translation initiation factor eIF2α was detected in the mutant, suggesting that YLC3 regulates the homeostasis of amino acid metabolism and chloroplast thylakoid development through modulation of processes during protein synthesis
YLC3	Os02g0686400	LOC_Os02g46130	chloroplast development	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.
YLC3	Os02g0686400	LOC_Os02g46130	cytosol	The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.	 Map-based cloning identified that YLC3 encodes an aspartyl-tRNA synthetase which is localized in cytosol and mitochondria
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	leaf	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	YPD1 was preferentially expressed in the leaf and encodes an LRR-Like1 (LRRL1) protein
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	leaf	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	These findings revealed that the novel rice LRRL1 protein YPD1 affects rice chloroplast development and leaf senescence
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	leaf senescence	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	These findings revealed that the novel rice LRRL1 protein YPD1 affects rice chloroplast development and leaf senescence
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	chloroplast	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	YPD1 localized on the chloroplast membrane
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	chloroplast	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	These findings revealed that the novel rice LRRL1 protein YPD1 affects rice chloroplast development and leaf senescence
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	senescence	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	The ypd1 mutants exhibited a yellow and dwarf phenotype from germination, and premature senescence starting at tillering
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	senescence	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	Moreover, the ypd1 mutants were sensitive to high light, which accelerated cell death and senescence
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	senescence	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	These findings revealed that the novel rice LRRL1 protein YPD1 affects rice chloroplast development and leaf senescence
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	tillering	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	The ypd1 mutants exhibited a yellow and dwarf phenotype from germination, and premature senescence starting at tillering
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	development	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	These findings revealed that the novel rice LRRL1 protein YPD1 affects rice chloroplast development and leaf senescence
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	cell death	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	Moreover, the ypd1 mutants were sensitive to high light, which accelerated cell death and senescence
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	cell death	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	Trypan blue staining, TUNEL experiments, NBT staining, and DAB staining demonstrated that the ypd1 mutants showed cell death and accumulated reactive oxygen species
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	dwarf	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	The ypd1 mutants exhibited a yellow and dwarf phenotype from germination, and premature senescence starting at tillering
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	chloroplast development	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	These findings revealed that the novel rice LRRL1 protein YPD1 affects rice chloroplast development and leaf senescence
YPD1	Os06g0237502|Os06g0237600	LOC_Os06g13050	reactive oxygen species	The Rice LRR-Like1 Protein YELLOW AND PREMATURE DWARF 1 is Involved in High Light-Induced Leaf Senescence	Trypan blue staining, TUNEL experiments, NBT staining, and DAB staining demonstrated that the ypd1 mutants showed cell death and accumulated reactive oxygen species
YSA	Os03g0597200	LOC_Os03g40020	fertility	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	We showed that the ysa mutation has no apparent negative effects on several important agronomic traits, such as fertility, stigma extrusion rate, selfed seed-setting rate, hybrid seed-setting rate, and yield heterosis under normal growth conditions
YSA	Os03g0597200	LOC_Os03g40020	seed	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	Here we report a rice (Oryza sativa) mutant named young seedling albino (ysa) derived from the rice thermo/photoperiod-sensitive genic male-sterile line Pei'ai64S, which is a leading male-sterile line for commercial two-line hybrid rice production
YSA	Os03g0597200	LOC_Os03g40020	seed	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	We showed that the ysa mutation has no apparent negative effects on several important agronomic traits, such as fertility, stigma extrusion rate, selfed seed-setting rate, hybrid seed-setting rate, and yield heterosis under normal growth conditions
YSA	Os03g0597200	LOC_Os03g40020	leaf	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	The ysa mutant develops albino leaves before the three-leaf stage, but the mutant gradually turns green and recovers to normal green at the six-leaf stage
YSA	Os03g0597200	LOC_Os03g40020	leaf	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	Further investigation showed that the change in leaf color in ysa mutant is associated with changes in chlorophyll content and chloroplast development
YSA	Os03g0597200	LOC_Os03g40020	sterile	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	Here we report a rice (Oryza sativa) mutant named young seedling albino (ysa) derived from the rice thermo/photoperiod-sensitive genic male-sterile line Pei'ai64S, which is a leading male-sterile line for commercial two-line hybrid rice production
YSA	Os03g0597200	LOC_Os03g40020	yield	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	We showed that the ysa mutation has no apparent negative effects on several important agronomic traits, such as fertility, stigma extrusion rate, selfed seed-setting rate, hybrid seed-setting rate, and yield heterosis under normal growth conditions
YSA	Os03g0597200	LOC_Os03g40020	yield	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	We further demonstrated that ysa can be used as an early marker for efficient identification and elimination of false hybrids in commercial hybrid rice production, resulting in yield increases by up to approximately 537 kg ha(-1)
YSA	Os03g0597200	LOC_Os03g40020	chloroplast	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	Further investigation showed that the change in leaf color in ysa mutant is associated with changes in chlorophyll content and chloroplast development
YSA	Os03g0597200	LOC_Os03g40020	seedling	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	Here we report a rice (Oryza sativa) mutant named young seedling albino (ysa) derived from the rice thermo/photoperiod-sensitive genic male-sterile line Pei'ai64S, which is a leading male-sterile line for commercial two-line hybrid rice production
YSA	Os03g0597200	LOC_Os03g40020	heterosis	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	We showed that the ysa mutation has no apparent negative effects on several important agronomic traits, such as fertility, stigma extrusion rate, selfed seed-setting rate, hybrid seed-setting rate, and yield heterosis under normal growth conditions
YSA	Os03g0597200	LOC_Os03g40020	growth	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	We showed that the ysa mutation has no apparent negative effects on several important agronomic traits, such as fertility, stigma extrusion rate, selfed seed-setting rate, hybrid seed-setting rate, and yield heterosis under normal growth conditions
YSA	Os03g0597200	LOC_Os03g40020	stem	Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	YSA is highly expressed in young leaves and stems, and its expression level is regulated by light
YSS1	Os04g0692200	LOC_Os04g59570	seedlings	Young Seedling Stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.	Furthermore, levels of chloroplast proteins are mostly reduced in yss1 seedlings
YSS1	Os04g0692200	LOC_Os04g59570	seedling	Young Seedling Stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.	Together, our findings identify YSS1 as a novel regulator of PEP activity essential for chloroplast development at rice seedling stage
YSS1	Os04g0692200	LOC_Os04g59570	chloroplast	Young Seedling Stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.	YSS1 encodes a chloroplast nucleoid-localized protein belonging to the DUF3727 superfamily
YSS1	Os04g0692200	LOC_Os04g59570	chloroplast	Young Seedling Stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.	Furthermore, levels of chloroplast proteins are mostly reduced in yss1 seedlings
YSS1	Os04g0692200	LOC_Os04g59570	chloroplast	Young Seedling Stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.	Together, our findings identify YSS1 as a novel regulator of PEP activity essential for chloroplast development at rice seedling stage
YSS1	Os04g0692200	LOC_Os04g59570	development	Young Seedling Stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.	Together, our findings identify YSS1 as a novel regulator of PEP activity essential for chloroplast development at rice seedling stage
YSS1	Os04g0692200	LOC_Os04g59570	chloroplast development	Young Seedling Stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.	Together, our findings identify YSS1 as a novel regulator of PEP activity essential for chloroplast development at rice seedling stage
YY1|OsLTPc2|LTPL45	Os09g0525500	LOC_Os09g35700	anther	Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.)	Two cDNAs (YY1 and YY2), representing genes that are specifically expressed in anthers at the uninucleate microspore stage, were isolated and characterized
YY1|OsLTPc2|LTPL45	Os09g0525500	LOC_Os09g35700	microspore	Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.)	Two cDNAs (YY1 and YY2), representing genes that are specifically expressed in anthers at the uninucleate microspore stage, were isolated and characterized
YY1|OsLTPc2|LTPL45	Os09g0525500	LOC_Os09g35700	tapetal	Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.)	The YY1 transcript was localized in the tapetal cells and the peripheral cells of the vascular bundle
YY1|OsLTPc2|LTPL45	Os09g0525500	LOC_Os09g35700	vascular bundle	Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.)	The YY1 transcript was localized in the tapetal cells and the peripheral cells of the vascular bundle
Z15	Os05g0218400	LOC_Os05g12680	temperature	Zebra leaf 15, a receptor-like protein kinase involved in moderate low temperature signaling pathway in rice.	The expression of Z15 is induced by moderate low temperature (18 C)
Z15	Os05g0218400	LOC_Os05g12680	temperature	Zebra leaf 15, a receptor-like protein kinase involved in moderate low temperature signaling pathway in rice.	The mutation of Z15 influenced the expression of two downstream genes, OsWRKY71 and OsMYB4, that were responsive to moderate low temperature
Z15	Os05g0218400	LOC_Os05g12680	temperature	Zebra leaf 15, a receptor-like protein kinase involved in moderate low temperature signaling pathway in rice.	The results show that Z15 plays a crucial role in the early stages of the response to moderate low temperature in rice
Z15	Os05g0218400	LOC_Os05g12680	temperature	Zebra leaf 15, a receptor-like protein kinase involved in moderate low temperature signaling pathway in rice.	Further study indiceted that Z15 plays a crucial role in the early stages of the response to moderate low temperature in rice
Z15	Os05g0218400	LOC_Os05g12680	plasma membrane	Zebra leaf 15, a receptor-like protein kinase involved in moderate low temperature signaling pathway in rice.	Subcellular localization analysis indicates that Z15 and z15 are localized on the plasma membrane
Z3	Os03g0147400	LOC_Os03g05390	leaf	The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves.	These results suggest that leaf variegation in the z3 mutant is caused by an unbalanced accumulation of citrate in a transverse pattern in the leaves
Z3	Os03g0147400	LOC_Os03g05390	leaf	The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves.	Taking these results together, we propose that Z3 plays an important role in citrate transport and distribution during leaf development and is a possible candidate for a CitMHS family member in plants
Z3	Os03g0147400	LOC_Os03g05390	leaf development	The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves.	Taking these results together, we propose that Z3 plays an important role in citrate transport and distribution during leaf development and is a possible candidate for a CitMHS family member in plants
Z3	Os03g0147400	LOC_Os03g05390	development	The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves.	Taking these results together, we propose that Z3 plays an important role in citrate transport and distribution during leaf development and is a possible candidate for a CitMHS family member in plants
Z3	Os03g0147400	LOC_Os03g05390	map-based cloning	The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves.	Map-based cloning revealed that the Z3 locus encodes a putative citrate transporter that belongs to the citrate-metal hydrogen symport (CitMHS) family
Z3	Os03g0147400	LOC_Os03g05390	transporter	The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves.	Map-based cloning revealed that the Z3 locus encodes a putative citrate transporter that belongs to the citrate-metal hydrogen symport (CitMHS) family
Z3	Os03g0147400	LOC_Os03g05390	transporter	The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves.	To investigate whether Z3 acts as a citrate transporter in rice, we measured citrate levels in wild-type leaves and in the dark-green and green sectors of the leaves of z3 mutants
ZBED	Os01g0547200	LOC_Os01g36670	resistance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought
ZBED	Os01g0547200	LOC_Os01g36670	resistance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	We have previously described the role of the rice ZBED protein containing three Zn-finger BED domains in disease resistance against the fungal pathogen Magnaporthe oryzae
ZBED	Os01g0547200	LOC_Os01g36670	resistance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	More importantly, the disease resistance response conferred by ZBED is not compromised by drought-induced stress
ZBED	Os01g0547200	LOC_Os01g36670	resistance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Conclusions: Together our data indicate that ZBED might represent a new type of transcriptional regulator playing simultaneously a positive role in both disease resistance and drought tolerance
ZBED	Os01g0547200	LOC_Os01g36670	disease	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought
ZBED	Os01g0547200	LOC_Os01g36670	disease	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	We have previously described the role of the rice ZBED protein containing three Zn-finger BED domains in disease resistance against the fungal pathogen Magnaporthe oryzae
ZBED	Os01g0547200	LOC_Os01g36670	disease	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	More importantly, the disease resistance response conferred by ZBED is not compromised by drought-induced stress
ZBED	Os01g0547200	LOC_Os01g36670	disease	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Conclusions: Together our data indicate that ZBED might represent a new type of transcriptional regulator playing simultaneously a positive role in both disease resistance and drought tolerance
ZBED	Os01g0547200	LOC_Os01g36670	disease resistance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought
ZBED	Os01g0547200	LOC_Os01g36670	disease resistance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	We have previously described the role of the rice ZBED protein containing three Zn-finger BED domains in disease resistance against the fungal pathogen Magnaporthe oryzae
ZBED	Os01g0547200	LOC_Os01g36670	disease resistance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	More importantly, the disease resistance response conferred by ZBED is not compromised by drought-induced stress
ZBED	Os01g0547200	LOC_Os01g36670	disease resistance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Conclusions: Together our data indicate that ZBED might represent a new type of transcriptional regulator playing simultaneously a positive role in both disease resistance and drought tolerance
ZBED	Os01g0547200	LOC_Os01g36670	drought	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought
ZBED	Os01g0547200	LOC_Os01g36670	drought	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Interestingly, ZBED overexpressor rice lines show increased drought tolerance
ZBED	Os01g0547200	LOC_Os01g36670	drought	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Conclusions: Together our data indicate that ZBED might represent a new type of transcriptional regulator playing simultaneously a positive role in both disease resistance and drought tolerance
ZBED	Os01g0547200	LOC_Os01g36670	tolerance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Interestingly, ZBED overexpressor rice lines show increased drought tolerance
ZBED	Os01g0547200	LOC_Os01g36670	tolerance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Conclusions: Together our data indicate that ZBED might represent a new type of transcriptional regulator playing simultaneously a positive role in both disease resistance and drought tolerance
ZBED	Os01g0547200	LOC_Os01g36670	drought tolerance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Interestingly, ZBED overexpressor rice lines show increased drought tolerance
ZBED	Os01g0547200	LOC_Os01g36670	drought tolerance	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Conclusions: Together our data indicate that ZBED might represent a new type of transcriptional regulator playing simultaneously a positive role in both disease resistance and drought tolerance
ZBED	Os01g0547200	LOC_Os01g36670	stress	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought
ZBED	Os01g0547200	LOC_Os01g36670	stress	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	More importantly, the disease resistance response conferred by ZBED is not compromised by drought-induced stress
ZBED	Os01g0547200	LOC_Os01g36670	magnaporthe oryzae	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	We have previously described the role of the rice ZBED protein containing three Zn-finger BED domains in disease resistance against the fungal pathogen Magnaporthe oryzae
ZBED	Os01g0547200	LOC_Os01g36670	immunity	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Results: Using Nicotiana benthamiana as a heterologous system, we show that ZBED localizes in the nucleus, binds DNA, and triggers basal immunity
ZBED	Os01g0547200	LOC_Os01g36670	pathogen	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	We have previously described the role of the rice ZBED protein containing three Zn-finger BED domains in disease resistance against the fungal pathogen Magnaporthe oryzae
ZBED	Os01g0547200	LOC_Os01g36670	transcriptional regulator	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought	Conclusions: Together our data indicate that ZBED might represent a new type of transcriptional regulator playing simultaneously a positive role in both disease resistance and drought tolerance
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	meiotic	OsAM1 is required for leptotene-zygotene transition in rice	In the absence of OsAM1, many other critical meiotic components, including PAIR2, ZEP1 and OsMER3, could not be correctly installed onto chromosomes
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	drought	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	The expression levels of the drought-responsive genes RD22, SODA1, bZIP46 and POD, as well as the ABA synthetic gene ZEP1 were up-regulated in the OsDIL-overexpression lines but the ABA degradation gene ABAOX3 was down-regulated
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	microspore	The central element protein ZEP1 of the synaptonemal complex regulates the number of crossovers during meiosis in rice	In addition, ZEP1 is reloaded onto chromosomes in early microspores as the chromosome decondense, suggesting that ZEP1 might have other biological functions during this process
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	meiosis	The central element protein ZEP1 of the synaptonemal complex regulates the number of crossovers during meiosis in rice	The central element protein ZEP1 of the synaptonemal complex regulates the number of crossovers during meiosis in rice
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	meiotic	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis	Finally, we found that the centromeric localization of OsSGO1 depends on OsAM1, not other meiotic proteins such as OsREC8, PAIR2, OsMER3, or ZEP1
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Several key meiotic proteins, including ZEP1 and OsMER3, were not loaded normally onto chromosomes in Oscom1 mutants, whereas the localization of OsREC8, PAIR2 and PAIR3 seemed to be normal
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	meiotic	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis	Moreover, OsCOM1 was loaded normally onto meiotic chromosomes in Osrec8, zep1 and Osmer3 mutants, but could not be properly loaded in Osam1, pair2 and OsSPO11-1(RNAi) plants
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	 ABA 	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages	The expression levels of the drought-responsive genes RD22, SODA1, bZIP46 and POD, as well as the ABA synthetic gene ZEP1 were up-regulated in the OsDIL-overexpression lines but the ABA degradation gene ABAOX3 was down-regulated
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	meiosis	OsAM1 is required for leptotene-zygotene transition in rice	In contrast, in pair2, Osmer3 and zep1 mutants, OsAM1 could be loaded normally, suggesting that OsAM1 plays a fundamental role in building the proper chromosome structure at the beginning of meiosis
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	stress	Cia Zeaxanthin Biosynthesis, OsZEP and OsVDE Regulate Striped Leaves Occurring in Response to Deep Transplanting of Rice.	 Carotenoids enter the xanthophyll cycle, and the metabolites that differentially accumulate in the striped leaves include zeaxanthin and its derivatives for photooxidative stress protection, driven by the upregulated expression of OsZEP
ZEP1|OsZEP	Os04g0452500	LOC_Os04g37960	oxidative stress	Cia Zeaxanthin Biosynthesis, OsZEP and OsVDE Regulate Striped Leaves Occurring in Response to Deep Transplanting of Rice.	 Carotenoids enter the xanthophyll cycle, and the metabolites that differentially accumulate in the striped leaves include zeaxanthin and its derivatives for photooxidative stress protection, driven by the upregulated expression of OsZEP
ZFP15	Os03g0820400	LOC_Os03g60570	abiotic stress	Rice ZFP15 gene encoding for a novel C2H2-type zinc finger protein lacking DLN box, is regulated by spike development but not by abiotic stresses	Rice ZFP15 gene encoding for a novel C2H2-type zinc finger protein lacking DLN box, is regulated by spike development but not by abiotic stresses
ZFP15	Os03g0820400	LOC_Os03g60570	flower	Rice ZFP15 gene encoding for a novel C2H2-type zinc finger protein lacking DLN box, is regulated by spike development but not by abiotic stresses	Besides, ZFP15 was shown to accumulate much more in flowering spike than in immature spike
ZFP177	Os07g0168800	LOC_Os07g07350	abiotic stress	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	These results suggested that ZFP177 might play crucial but differential roles in plant responses to various abiotic stresses
ZFP177	Os07g0168800	LOC_Os07g07350	drought	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	Through microarray analysis, it was found that four genes (ZFP177, ZFP181, ZFP176, ZFP173), two genes (ZFP181 and ZFP176) and one gene (ZFP157) were significantly induced by cold, drought and H(2)O(2) treatments, respectively
ZFP177	Os07g0168800	LOC_Os07g07350	drought	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	Overexpression of ZFP177 in tobacco conferred tolerance of transgenic plants to both low and high temperature stresses, but increased sensitivity to salt and drought stresses
ZFP177	Os07g0168800	LOC_Os07g07350	salt	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	Further expression analysis showed that ZFP177 was responsive to both cold and heat stresses, but down-regulated by salt
ZFP177	Os07g0168800	LOC_Os07g07350	salt	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	Overexpression of ZFP177 in tobacco conferred tolerance of transgenic plants to both low and high temperature stresses, but increased sensitivity to salt and drought stresses
ZFP177	Os07g0168800	LOC_Os07g07350	temperature	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	Overexpression of ZFP177 in tobacco conferred tolerance of transgenic plants to both low and high temperature stresses, but increased sensitivity to salt and drought stresses
ZFP177	Os07g0168800	LOC_Os07g07350	temperature	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance
ZFP177	Os07g0168800	LOC_Os07g07350	root	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	The subcellular localization assay indicated that ZFP177 was localized in cytoplasm in tobacco leaf and root cells
ZFP177	Os07g0168800	LOC_Os07g07350	leaf	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	The subcellular localization assay indicated that ZFP177 was localized in cytoplasm in tobacco leaf and root cells
ZFP179	Os01g0839100	LOC_Os01g62190	salt stress	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
ZFP179	Os01g0839100	LOC_Os01g62190	salt stress	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Our studies suggest that ZFP179 plays a crucial role in the plant response to salt stress, and is useful in developing transgenic crops with enhanced tolerance to salt stress
ZFP179	Os01g0839100	LOC_Os01g62190	ABA	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The real-time RT-PCR analysis showed that ZFP179 was highly expressed in immature spikes, and markedly induced in the seedlings by NaCl, PEG 6000, and ABA treatments
ZFP179	Os01g0839100	LOC_Os01g62190	seedling	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Through microarray analysis, a salt-responsive zinc finger protein gene ZFP179 was identified and subsequently cloned from rice seedlings
ZFP179	Os01g0839100	LOC_Os01g62190	seedling	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The real-time RT-PCR analysis showed that ZFP179 was highly expressed in immature spikes, and markedly induced in the seedlings by NaCl, PEG 6000, and ABA treatments
ZFP179	Os01g0839100	LOC_Os01g62190	seedling	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Overexpression of ZFP179 in rice increased salt tolerance and the transgenic seedlings showed hypersensitivity to exogenous ABA
ZFP179	Os01g0839100	LOC_Os01g62190	salt tolerance	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Overexpression of ZFP179 in rice increased salt tolerance and the transgenic seedlings showed hypersensitivity to exogenous ABA
ZFP179	Os01g0839100	LOC_Os01g62190	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Through microarray analysis, a salt-responsive zinc finger protein gene ZFP179 was identified and subsequently cloned from rice seedlings
ZFP179	Os01g0839100	LOC_Os01g62190	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Overexpression of ZFP179 in rice increased salt tolerance and the transgenic seedlings showed hypersensitivity to exogenous ABA
ZFP179	Os01g0839100	LOC_Os01g62190	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
ZFP179	Os01g0839100	LOC_Os01g62190	salt	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	Our studies suggest that ZFP179 plays a crucial role in the plant response to salt stress, and is useful in developing transgenic crops with enhanced tolerance to salt stress
ZFP179	Os01g0839100	LOC_Os01g62190	oxidative	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice	The ZFP179 transgenic rice exhibited significantly increased tolerance to oxidative stress, the reactive oxygen species (ROS)-scavenging ability, and expression levels of a number of stress-related genes, including OsDREB2A, OsP5CS OsProT, and OsLea3 under salt stress
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	abiotic stress	A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.)	Overexpression of ZFP182 significantly enhanced multiple abiotic stress tolerances, including salt, cold and drought tolerances in transgenic rice
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	drought tolerance	A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.)	Overexpression of ZFP182 significantly enhanced multiple abiotic stress tolerances, including salt, cold and drought tolerances in transgenic rice
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	drought	A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.)	Overexpression of ZFP182 significantly enhanced multiple abiotic stress tolerances, including salt, cold and drought tolerances in transgenic rice
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	root	A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance	The expression analysis showed that ZFP182 gene was constitutively expressed in leaves, culms, roots and spikes at the adult rice plants, and markedly induced in the seedlings by cold (4 degrees C), 150 mM NaCl and 0
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	culm	A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance	The expression analysis showed that ZFP182 gene was constitutively expressed in leaves, culms, roots and spikes at the adult rice plants, and markedly induced in the seedlings by cold (4 degrees C), 150 mM NaCl and 0
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	defense	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	Nipponbare) C(2) H(2) -type ZFP ZFP182 in ABA-induced antioxidant defense and the relationship between ZFP182 and two rice MAPKs, OsMPK1 and OsMPK5 in ABA signaling were investigated
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	defense	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	These results indicate that ZFP182 is required for ABA-induced antioxidant defense and the expression of ZFP182 is regulated by rice MAPKs in ABA signaling
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	defense	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	salt	A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance	Expression of ZFP182 in transgenic tobacco and overexpression in rice increased plant tolerance to salt stress
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	salt	A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance	These results demonstrated that ZFP182 might be involved in plant responses to salt stress
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	ABA	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	Nipponbare) C(2) H(2) -type ZFP ZFP182 in ABA-induced antioxidant defense and the relationship between ZFP182 and two rice MAPKs, OsMPK1 and OsMPK5 in ABA signaling were investigated
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	ABA	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	ABA treatment induced the increases in the expression of ZFP182, OsMPK1 and OsMPK5, and the activities of superoxide dismutase (SOD) and ascorbate peroxidase (APX) in rice leaves
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	ABA	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	Besides, OsMPK1 and OsMPK5 were shown to be required for the up-regulation in the expression of ZFP182 in ABA signaling, but ZFP182 did not mediate the ABA-induced up-regulation in the expression of OsMPK1 and OsMPK5
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	ABA	The C2H2-type zinc finger protein ZFP182 is involved in abscisic acid-induced antioxidant defense in rice	These results indicate that ZFP182 is required for ABA-induced antioxidant defense and the expression of ZFP182 is regulated by rice MAPKs in ABA signaling
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	salt	A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.)	Overexpression of ZFP182 significantly enhanced multiple abiotic stress tolerances, including salt, cold and drought tolerances in transgenic rice
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	salt stress	A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance	Expression of ZFP182 in transgenic tobacco and overexpression in rice increased plant tolerance to salt stress
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	salt stress	A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance	These results demonstrated that ZFP182 might be involved in plant responses to salt stress
ZFP182|ZOS3-21	Os03g0820300	LOC_Os03g60560	seedling	A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance	The expression analysis showed that ZFP182 gene was constitutively expressed in leaves, culms, roots and spikes at the adult rice plants, and markedly induced in the seedlings by cold (4 degrees C), 150 mM NaCl and 0
ZFP185	Os02g0195600	LOC_Os02g10200	growth	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Here we report a novel A20/AN1-type zinc finger protein ZFP185 involved in GA and ABA signaling in the regulation of growth and stress response
ZFP185	Os02g0195600	LOC_Os02g10200	growth	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Our study suggests that ZFP185 regulates plant growth and stress responses by affecting GA and ABA biosynthesis in rice
ZFP185	Os02g0195600	LOC_Os02g10200	salt	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Moreover, it was found that ZFP185, unlike previously known A20/AN1-type zinc finger genes, increases sensitivity to drought, cold, and salt stresses, implying the negative role of ZFP185 in stress tolerance
ZFP185	Os02g0195600	LOC_Os02g10200	tolerance	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Moreover, it was found that ZFP185, unlike previously known A20/AN1-type zinc finger genes, increases sensitivity to drought, cold, and salt stresses, implying the negative role of ZFP185 in stress tolerance
ZFP185	Os02g0195600	LOC_Os02g10200	ABA	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Here we report a novel A20/AN1-type zinc finger protein ZFP185 involved in GA and ABA signaling in the regulation of growth and stress response
ZFP185	Os02g0195600	LOC_Os02g10200	ABA	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Besides GA, overexpression of ZFP185 decreased ABA content and expression of several ABA biosynthesis-related genes
ZFP185	Os02g0195600	LOC_Os02g10200	ABA	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Our study suggests that ZFP185 regulates plant growth and stress responses by affecting GA and ABA biosynthesis in rice
ZFP185	Os02g0195600	LOC_Os02g10200	salt stress	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Moreover, it was found that ZFP185, unlike previously known A20/AN1-type zinc finger genes, increases sensitivity to drought, cold, and salt stresses, implying the negative role of ZFP185 in stress tolerance
ZFP185	Os02g0195600	LOC_Os02g10200	stress	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Here we report a novel A20/AN1-type zinc finger protein ZFP185 involved in GA and ABA signaling in the regulation of growth and stress response
ZFP185	Os02g0195600	LOC_Os02g10200	stress	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Moreover, it was found that ZFP185, unlike previously known A20/AN1-type zinc finger genes, increases sensitivity to drought, cold, and salt stresses, implying the negative role of ZFP185 in stress tolerance
ZFP185	Os02g0195600	LOC_Os02g10200	stress	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Our study suggests that ZFP185 regulates plant growth and stress responses by affecting GA and ABA biosynthesis in rice
ZFP185	Os02g0195600	LOC_Os02g10200	ga	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Here we report a novel A20/AN1-type zinc finger protein ZFP185 involved in GA and ABA signaling in the regulation of growth and stress response
ZFP185	Os02g0195600	LOC_Os02g10200	ga	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	The application of exogenous GA3 can fully rescue the semi-dwarfism phenotype of ZFP185 overexpressing plants, suggesting the negative role of ZFP185 in GA biosynthesis
ZFP185	Os02g0195600	LOC_Os02g10200	ga	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Our study suggests that ZFP185 regulates plant growth and stress responses by affecting GA and ABA biosynthesis in rice
ZFP185	Os02g0195600	LOC_Os02g10200	R protein	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Here we report a novel A20/AN1-type zinc finger protein ZFP185 involved in GA and ABA signaling in the regulation of growth and stress response
ZFP185	Os02g0195600	LOC_Os02g10200	GA	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Here we report a novel A20/AN1-type zinc finger protein ZFP185 involved in GA and ABA signaling in the regulation of growth and stress response
ZFP185	Os02g0195600	LOC_Os02g10200	GA	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	The application of exogenous GA3 can fully rescue the semi-dwarfism phenotype of ZFP185 overexpressing plants, suggesting the negative role of ZFP185 in GA biosynthesis
ZFP185	Os02g0195600	LOC_Os02g10200	GA	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Our study suggests that ZFP185 regulates plant growth and stress responses by affecting GA and ABA biosynthesis in rice
ZFP185	Os02g0195600	LOC_Os02g10200	cytoplasm	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	ZFP185 was localized in the cytoplasm and lacked transcriptional activation potential
ZFP185	Os02g0195600	LOC_Os02g10200	ABA	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Here we report a novel A20/AN1-type zinc finger protein ZFP185 involved in GA and ABA signaling in the regulation of growth and stress response
ZFP185	Os02g0195600	LOC_Os02g10200	ABA	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Besides GA, overexpression of ZFP185 decreased ABA content and expression of several ABA biosynthesis-related genes
ZFP185	Os02g0195600	LOC_Os02g10200	ABA	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Our study suggests that ZFP185 regulates plant growth and stress responses by affecting GA and ABA biosynthesis in rice
ZFP185	Os02g0195600	LOC_Os02g10200	stress tolerance	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Moreover, it was found that ZFP185, unlike previously known A20/AN1-type zinc finger genes, increases sensitivity to drought, cold, and salt stresses, implying the negative role of ZFP185 in stress tolerance
ZFP185	Os02g0195600	LOC_Os02g10200	stress response	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Here we report a novel A20/AN1-type zinc finger protein ZFP185 involved in GA and ABA signaling in the regulation of growth and stress response
ZFP185	Os02g0195600	LOC_Os02g10200	stress response	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Our study suggests that ZFP185 regulates plant growth and stress responses by affecting GA and ABA biosynthesis in rice
ZFP185	Os02g0195600	LOC_Os02g10200	zinc	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Here we report a novel A20/AN1-type zinc finger protein ZFP185 involved in GA and ABA signaling in the regulation of growth and stress response
ZFP185	Os02g0195600	LOC_Os02g10200	zinc	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Moreover, it was found that ZFP185, unlike previously known A20/AN1-type zinc finger genes, increases sensitivity to drought, cold, and salt stresses, implying the negative role of ZFP185 in stress tolerance
ZFP185	Os02g0195600	LOC_Os02g10200	plant growth	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	Our study suggests that ZFP185 regulates plant growth and stress responses by affecting GA and ABA biosynthesis in rice
ZFP185	Os02g0195600	LOC_Os02g10200	GA biosynthesis	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.).	The application of exogenous GA3 can fully rescue the semi-dwarfism phenotype of ZFP185 overexpressing plants, suggesting the negative role of ZFP185 in GA biosynthesis
ZFP245	Os07g0588700	LOC_Os07g39970	seedling	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245	Overproduction of ZFP245 enhanced the activities of reactive oxygen species-scavenging enzymes under stress conditions and increased the tolerance of rice seedlings to oxidative stress
ZFP245	Os07g0588700	LOC_Os07g39970	salt	Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid	However, ZFP245 was not regulated by high salt or abscisic acid treatment
ZFP245	Os07g0588700	LOC_Os07g39970	drought	Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid	The semi-quantitative-RT-PCR assay revealed ZFP245 was strongly induced after 6 h exposure to cold and drought stresses, and then reduced to the baseline
ZFP245	Os07g0588700	LOC_Os07g39970	drought	Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid	Taken together, ZFP245, as the first identified C2H2-type zinc finger protein involved in stress response in monocots probably plays a role as a transcription regulator in plant cold and drought responses through an ABA-independent pathway
ZFP245	Os07g0588700	LOC_Os07g39970	seedling	Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid	A C2H2-type zinc finger protein gene ZFP245 was cloned by RT-PCR approach from cold treated rice seedlings
ZFP245	Os07g0588700	LOC_Os07g39970	abiotic stress	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245	Our data suggest that ZFP245 may contribute to the tolerance of rice plants to cold and drought stresses by regulating proline levels and reactive oxygen species-scavenging activities, and therefore may be useful for developing transgenic crops with enhanced tolerance to abiotic stress
ZFP245	Os07g0588700	LOC_Os07g39970	transcription regulator	Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid	Taken together, ZFP245, as the first identified C2H2-type zinc finger protein involved in stress response in monocots probably plays a role as a transcription regulator in plant cold and drought responses through an ABA-independent pathway
ZFP245	Os07g0588700	LOC_Os07g39970	drought	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245	ZFP245 is a cold- and drought-responsive gene that encodes a zinc finger protein in rice
ZFP245	Os07g0588700	LOC_Os07g39970	drought	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245	Transgenic rice plants overexpressing ZFP245 were generated and found to display high tolerance to cold and drought stresses
ZFP245	Os07g0588700	LOC_Os07g39970	drought	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245	Our data suggest that ZFP245 may contribute to the tolerance of rice plants to cold and drought stresses by regulating proline levels and reactive oxygen species-scavenging activities, and therefore may be useful for developing transgenic crops with enhanced tolerance to abiotic stress
ZFP245	Os07g0588700	LOC_Os07g39970	drought	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245
ZFP245	Os07g0588700	LOC_Os07g39970	stem	Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid	Tissue expression analysis showed that ZFP245 was constitutively expressed in various rice tissues including roots, stems, leaves and spikes
ZFP245	Os07g0588700	LOC_Os07g39970	oxidative	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245	Overproduction of ZFP245 enhanced the activities of reactive oxygen species-scavenging enzymes under stress conditions and increased the tolerance of rice seedlings to oxidative stress
ZFP245	Os07g0588700	LOC_Os07g39970	oxidative	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245
ZFP245	Os07g0588700	LOC_Os07g39970	root	Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid	Tissue expression analysis showed that ZFP245 was constitutively expressed in various rice tissues including roots, stems, leaves and spikes
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	drought	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	We previously identified a salt and drought stress-responsive TFIIIA-type zinc finger protein gene ZFP252 from rice
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	drought	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	We found that overexpression of ZFP252 in rice increased the amount of free proline and soluble sugars, elevated the expression of stress defense genes and enhanced rice tolerance to salt and drought stresses, as compared with ZFP252 antisense and non-transgenic plants
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	drought	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	Our findings suggest that ZFP252 plays an important role in rice response to salt and drought stresses and is useful in engineering crop plants with enhanced tolerance to salt and drought stresses
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	drought	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	salt tolerance	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	salt	Cloning and characterization of RZF71 encoding a C2H2-type zinc	These results indicated that the RZF71 may play an important role in rice responses to salt and osmotic stresses as a transcription factor
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	salinity	Cloning and characterization of RZF71 encoding a C2H2-type zinc	The semi-quantitative RT-PCR assay showed RZF71 was strongly induced by high-salinity and 20% PEG6000 treatments, but not regulated by low temperature and ABA (abscisic acid) treatments
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	salt	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	We previously identified a salt and drought stress-responsive TFIIIA-type zinc finger protein gene ZFP252 from rice
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	salt	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	We found that overexpression of ZFP252 in rice increased the amount of free proline and soluble sugars, elevated the expression of stress defense genes and enhanced rice tolerance to salt and drought stresses, as compared with ZFP252 antisense and non-transgenic plants
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	salt	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	Our findings suggest that ZFP252 plays an important role in rice response to salt and drought stresses and is useful in engineering crop plants with enhanced tolerance to salt and drought stresses
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	salt	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	ABA	Cloning and characterization of RZF71 encoding a C2H2-type zinc	The semi-quantitative RT-PCR assay showed RZF71 was strongly induced by high-salinity and 20% PEG6000 treatments, but not regulated by low temperature and ABA (abscisic acid) treatments
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	temperature	Cloning and characterization of RZF71 encoding a C2H2-type zinc	The semi-quantitative RT-PCR assay showed RZF71 was strongly induced by high-salinity and 20% PEG6000 treatments, but not regulated by low temperature and ABA (abscisic acid) treatments
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	defense	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	We found that overexpression of ZFP252 in rice increased the amount of free proline and soluble sugars, elevated the expression of stress defense genes and enhanced rice tolerance to salt and drought stresses, as compared with ZFP252 antisense and non-transgenic plants
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	root	Cloning and characterization of RZF71 encoding a C2H2-type zinc	The expression profiling showed that RZF71 was constitutively expressed in roots, culms, leaves, and flowering spikes
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	culm	Cloning and characterization of RZF71 encoding a C2H2-type zinc	The expression profiling showed that RZF71 was constitutively expressed in roots, culms, leaves, and flowering spikes
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	transcription factor	Cloning and characterization of RZF71 encoding a C2H2-type zinc	A rice zinc-finger protein gene, RZF71, encoding the C2H2-type zinc-finger transcription factor was isolated from rice
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	transcription factor	Cloning and characterization of RZF71 encoding a C2H2-type zinc	These results indicated that the RZF71 may play an important role in rice responses to salt and osmotic stresses as a transcription factor
ZFP252|RZF71	Os12g0583700	LOC_Os12g39400	flower	Cloning and characterization of RZF71 encoding a C2H2-type zinc	The expression profiling showed that RZF71 was constitutively expressed in roots, culms, leaves, and flowering spikes
ZIP4|SPO22	Os01g0890900	LOC_Os01g66690	meiosis	ZIP4 in homologous chromosome synapsis and crossover formation in rice meiosis	ZIP4 in homologous chromosome synapsis and crossover formation in rice meiosis
ZIP4|SPO22	Os01g0890900	LOC_Os01g66690	meiotic	The role of OsMSH5 in crossover formation during rice meiosis	OsMSH5 can be loaded onto meiotic chromosomes in Oszip4, Osmer3, and hei10
ZL16	Os08g0225000	LOC_Os08g12840	leaf	Identification and Phenotypic Characterization of ZEBRA LEAF16 Encoding a Hydroxyacyl-ACP Dehydratase in Rice.	ZL16 was ubiquitously expressed in various plant organs, with a pronounced level in the young leaf
ZL16	Os08g0225000	LOC_Os08g12840	seedlings	Identification and Phenotypic Characterization of ZEBRA LEAF16 Encoding a Hydroxyacyl-ACP Dehydratase in Rice.	The zl16 mutant showed chlorotic abnormalities in the transverse sectors of the young leaves of seedlings
ZL16	Os08g0225000	LOC_Os08g12840	chloroplast	Identification and Phenotypic Characterization of ZEBRA LEAF16 Encoding a Hydroxyacyl-ACP Dehydratase in Rice.	The use of transmission electron microscopy (TEM) demonstrated that dramatic defects occurred in variegated zl16 leaves during the early development of a chloroplast
ZL16	Os08g0225000	LOC_Os08g12840	chloroplast	Identification and Phenotypic Characterization of ZEBRA LEAF16 Encoding a Hydroxyacyl-ACP Dehydratase in Rice.	A subcellular localization experiment indicated that ZL16 was targeted in the chloroplast
ZL16	Os08g0225000	LOC_Os08g12840	chloroplast	Identification and Phenotypic Characterization of ZEBRA LEAF16 Encoding a Hydroxyacyl-ACP Dehydratase in Rice.	Furthermore, we analyzed the expression of some nuclear genes involved in chloroplast development, and found they were altered in the zl16 mutant
ZL16	Os08g0225000	LOC_Os08g12840	development	Identification and Phenotypic Characterization of ZEBRA LEAF16 Encoding a Hydroxyacyl-ACP Dehydratase in Rice.	The use of transmission electron microscopy (TEM) demonstrated that dramatic defects occurred in variegated zl16 leaves during the early development of a chloroplast
ZL16	Os08g0225000	LOC_Os08g12840	map-based cloning	Identification and Phenotypic Characterization of ZEBRA LEAF16 Encoding a Hydroxyacyl-ACP Dehydratase in Rice.	Map-based cloning revealed that ZL16 encodes a hydroxyacyl-ACP dehydratase (HAD) involved in de novo fatty acid synthesis
ZL16	Os08g0225000	LOC_Os08g12840	chloroplast development	Identification and Phenotypic Characterization of ZEBRA LEAF16 Encoding a Hydroxyacyl-ACP Dehydratase in Rice.	Furthermore, we analyzed the expression of some nuclear genes involved in chloroplast development, and found they were altered in the zl16 mutant
ZN	Os06g0116400	LOC_Os06g02580	leaf development	ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development	Virus-induced gene silencing of a ZN homolog in Nicotiana benthamiana causes leaf variegation with sporadic green/yellow sectors, indicating that ZN is essential for chloroplast biogenesis during early leaf development
ZN	Os06g0116400	LOC_Os06g02580	chloroplast	ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development	Virus-induced gene silencing of a ZN homolog in Nicotiana benthamiana causes leaf variegation with sporadic green/yellow sectors, indicating that ZN is essential for chloroplast biogenesis during early leaf development
ZN	Os06g0116400	LOC_Os06g02580	chloroplast	ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development	Together, we propose that ZN is required for protecting developing chloroplasts, especially during the assembly of thylakoid protein complexes, from incidental light after darkness
ZN	Os06g0116400	LOC_Os06g02580	leaf	ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development	Virus-induced gene silencing of a ZN homolog in Nicotiana benthamiana causes leaf variegation with sporadic green/yellow sectors, indicating that ZN is essential for chloroplast biogenesis during early leaf development
ZYGO1	Os01g0219200	LOC_Os01g11990	meiosis	The F-box protein ZYGO1 mediates bouquet formation to promote homologous pairing, synapsis, and recombination in rice meiosis.	The suppressed telomere clustering in homologous pairing aberration in rice meiosis 1 (pair1) zygo1 and rice completion of meiotic recombination (Oscom1) zygo1 double mutants, together with the altered localization of OsSAD1 (a SUN protein associated with the nuclear envelope) in zygo1 showed that ZYGO1 has a significant function in bouquet formation
ZYGO1	Os01g0219200	LOC_Os01g11990	meiosis	The F-box protein ZYGO1 mediates bouquet formation to promote homologous pairing, synapsis, and recombination in rice meiosis.	Therefore, we propose that ZYGO1 mediates bouquet formation to efficiently promote homolog pairing, synapsis, and CO formation in rice meiosis
ZYGO1	Os01g0219200	LOC_Os01g11990	meiotic	The F-box protein ZYGO1 mediates bouquet formation to promote homologous pairing, synapsis, and recombination in rice meiosis.	The suppressed telomere clustering in homologous pairing aberration in rice meiosis 1 (pair1) zygo1 and rice completion of meiotic recombination (Oscom1) zygo1 double mutants, together with the altered localization of OsSAD1 (a SUN protein associated with the nuclear envelope) in zygo1 showed that ZYGO1 has a significant function in bouquet formation
ZYGO1	Os01g0219200	LOC_Os01g11990	crossover	The F-box protein ZYGO1 mediates bouquet formation to promote homologous pairing, synapsis, and recombination in rice meiosis.	Furthermore, crossover (CO) formation was disturbed, and foci of Human enhancer of invasion 10 (HEI10) were restricted to the partially-synapsed chromosome regions, indicating that CO reduction might be caused by the failure of full-length chromosome alignment in zygo1
ZYGO1	Os01g0219200	LOC_Os01g11990	meiotic recombination	The F-box protein ZYGO1 mediates bouquet formation to promote homologous pairing, synapsis, and recombination in rice meiosis.	The suppressed telomere clustering in homologous pairing aberration in rice meiosis 1 (pair1) zygo1 and rice completion of meiotic recombination (Oscom1) zygo1 double mutants, together with the altered localization of OsSAD1 (a SUN protein associated with the nuclear envelope) in zygo1 showed that ZYGO1 has a significant function in bouquet formation